BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028883
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1O4V|A Chain A, Crystal Structure Of The Catalytic Subunit Of A
Phosphoribosylaminoimidazole Mutase (Tm0446) From
Thermotoga Maritima At 1.77 A Resolution
Length = 183
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 64/144 (44%), Positives = 90/144 (62%), Gaps = 1/144 (0%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II
Sbjct: 14 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 73
Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNNAKNA 177
G G AHL G+ A+ + + VI VP+ + + D + SI +MP V VA+V NNAKNA
Sbjct: 74 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 133
Query: 178 ALYAVKVLGIADEDLLERIRKYVE 201
+ A +LGI ++ ++++Y E
Sbjct: 134 GILAASILGIKYPEIARKVKEYKE 157
>pdb|3LP6|A Chain A, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|B Chain B, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|C Chain C, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
pdb|3LP6|D Chain D, Crystal Structure Of Rv3275c-E60a From Mycobacterium
Tubercu 1.7a Resolution
Length = 174
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/142 (41%), Positives = 87/142 (61%), Gaps = 1/142 (0%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VG+IM SD D PVM DAA L++F +P E++++ H+ + SYA A RG+++II
Sbjct: 8 PRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARGLEVII 67
Query: 119 VGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMPSHVQVASVPRNNAKNA 177
G G AHL G+ AA + + VI VP+ L D +++ ++MP+ V VA+V A NA
Sbjct: 68 AGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIGGAGNA 127
Query: 178 ALYAVKVLGIADEDLLERIRKY 199
L AV++LG A+ L RI +
Sbjct: 128 GLLAVRMLGAANPQLRARIVAF 149
>pdb|1XMP|A Chain A, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|B Chain B, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|C Chain C, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|D Chain D, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|E Chain E, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|F Chain F, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|G Chain G, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
pdb|1XMP|H Chain H, Crystal Structure Of Pure (Ba0288) From Bacillus Anthracis
At 1.8 Resolution
Length = 170
Score = 88.2 bits (217), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 13 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 72
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 176
G G AHL G+ AA + + VI VP+ S+ + D +++ ++MP V VA+V + + N
Sbjct: 73 GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 132
Query: 177 AALYAVKVLGIADEDL---LERIRKYVEE 202
A L A ++LG +D+ LE R+ +E+
Sbjct: 133 AGLLAAQILGSFHDDIHDALELRREAIEK 161
>pdb|4B4K|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|E Chain E, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|F Chain F, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|G Chain G, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|H Chain H, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|I Chain I, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|J Chain J, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|K Chain K, Crystal Structure Of Bacillus Anthracis Pure
pdb|4B4K|L Chain L, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY3|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|A Chain A, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|B Chain B, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|C Chain C, Crystal Structure Of Bacillus Anthracis Pure
pdb|4AY4|D Chain D, Crystal Structure Of Bacillus Anthracis Pure
Length = 181
Score = 87.8 bits (216), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 86/149 (57%), Gaps = 6/149 (4%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 24 LVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVIIA 83
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVASVP--RNNAKN 176
G G AHL G+ AA + + VI VP+ S+ + D +++ ++MP V VA+V + + N
Sbjct: 84 GAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGSTN 143
Query: 177 AALYAVKVLGIADEDL---LERIRKYVEE 202
A L A ++LG +D+ LE R+ +E+
Sbjct: 144 AGLLAAQILGSFHDDIHDALELRREAIEK 172
>pdb|3OOW|A Chain A, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|B Chain B, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|C Chain C, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|D Chain D, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|E Chain E, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|F Chain F, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|G Chain G, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4.
pdb|3OOW|H Chain H, Octameric Structure Of The Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Francisella
Tularensis Subsp. Tularensis Schu S4
Length = 166
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 8 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 67
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPRNNAKNA 177
G AHL G AA + + V+ VP+ S +D +++ ++ P+ + VA+ + AKNA
Sbjct: 68 AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 127
Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
AL+A +L D ++ + + ++ E
Sbjct: 128 ALFAASILQHTDINIAKALAEFRAE 152
>pdb|3OPQ|A Chain A, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|B Chain B, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|C Chain C, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|D Chain D, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|E Chain E, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|F Chain F, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|G Chain G, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure.
pdb|3OPQ|H Chain H, Phosphoribosylaminoimidazole Carboxylase With
Fructose-6-Phosphate Bound To The Central Channel Of The
Octameric Protein Structure
Length = 163
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 80/145 (55%), Gaps = 3/145 (2%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
VG+I S D + L + G+ YE +++ H+ + YA +AKERG+K+II G
Sbjct: 5 VGVIXGSKSDWSTXKECCDILDNLGIGYECEVVSAHRTPDKXFDYAETAKERGLKVIIAG 64
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPRNNAKNA 177
G AHL G AA + + V+ VP+ S +D +++ ++ P+ + VA+ + AKNA
Sbjct: 65 AGGAAHLPGXVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQXPAGIPVATFAIGXAGAKNA 124
Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
AL+A +L D ++ + + ++ E
Sbjct: 125 ALFAASILQHTDINIAKALAEFRAE 149
>pdb|4GRD|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|B Chain B, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|C Chain C, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
pdb|4GRD|D Chain D, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Burkholderia
Cenocepacia J2315
Length = 173
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 70/121 (57%), Gaps = 1/121 (0%)
Query: 49 ENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108
E + AP+VG++M S D VM A L +FGVPYE K++ H+ E YA
Sbjct: 3 EIQTAHTHSAPLVGVLMGSSSDWDVMKHAVAILQEFGVPYEAKVVSAHRMPDEMFDYAEK 62
Query: 109 AKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVA 167
A+ERG++ II G G AHL G+ AA + + V+ VP+ S+ D ++SI +MP V VA
Sbjct: 63 ARERGLRAIIAGAGGAAHLPGMLAAKTTVPVLGVPVASKYLKGVDSLHSIVQMPKGVPVA 122
Query: 168 S 168
+
Sbjct: 123 T 123
>pdb|1U11|A Chain A, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
pdb|1U11|B Chain B, Pure (N5-Carboxyaminoimidazole Ribonucleotide Mutase) From
The Acidophile Acetobacter Aceti
Length = 182
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 18 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 77
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 78 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 137
Query: 172 NNAKN 176
+ AKN
Sbjct: 138 SGAKN 142
>pdb|2FW1|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FW1|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8.5
pdb|2FWJ|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
pdb|2FWJ|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With Air (5-Aminoimidazole
Ribonucleotide)
Length = 183
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FWA|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
pdb|2FWA|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H89n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 7
Length = 183
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G A+L G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAANLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FW6|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW6|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) Mutant H59n From The Acidophilic Bacterium
Acetobacter Aceti, At Ph 5.4
pdb|2FW7|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW7|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWP|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
pdb|2FWP|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H59n From The Acidophilic Bacterium Acetobacter
Aceti, Bound To Isocair
Length = 183
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ ++ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSANRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FWB|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FWB|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G A L G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAFLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FW9|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW9|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59f From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAFRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2FWI|A Chain A, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
pdb|2FWI|B Chain B, Structure Of Pure (n5-carboxyaminoimidazole Ribonucleotide
Mutase) H59d, From The Acidophilic Bacterium Acetobacter
Aceti, Complexed With 5-aminoimidazole Ribonucleotide
(air)
Length = 183
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ + YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSADRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G AHL G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2YWX|A Chain A, Crystal Structure Of Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Methanocaldococcus
Jannaschii
Length = 157
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 3/143 (2%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
++ IIM S+ DL + A L +FGV +E+++ H+ + ++K + I
Sbjct: 1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 179
G+ AHL GV A+ + VI VP+ ++ D +++S++MP + VA+V + +NAA+
Sbjct: 58 IAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAI 117
Query: 180 YAVKVLGIADEDLLERIRKYVEE 202
A+++L + DE++ +++ +Y E+
Sbjct: 118 LALEILALKDENIAKKLIEYREK 140
>pdb|3ORS|A Chain A, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|B Chain B, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|C Chain C, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|D Chain D, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|E Chain E, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|F Chain F, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|G Chain G, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
pdb|3ORS|H Chain H, Crystal Structure Of N5-Carboxyaminoimidazole
Ribonucleotide Mutase From Staphylococcus Aureus
Length = 163
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 85/147 (57%), Gaps = 3/147 (2%)
Query: 56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
++A V +IM S D +M ++ L F +PYE +++ H+ K + +A A+ERGI
Sbjct: 1 SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 116 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQV--ASVPRN 172
III G G AHL G+ A+ + + VI VP+ ++ D +++ ++MP + V ++
Sbjct: 61 IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120
Query: 173 NAKNAALYAVKVLGIADEDLLERIRKY 199
AKNA + A ++L I + L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147
>pdb|2FW8|A Chain A, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
pdb|2FW8|B Chain B, Structure Of Pure (N5-Carboxyaminoimidazole Ribonucleotide
Mutase) H89g From The Acidophilic Bacterium Acetobacter
Aceti, At Ph 8
Length = 183
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 3/125 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+
Sbjct: 19 AASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDW-SEDDVINSIRMPSHVQVAS--VPR 171
+II G G A L G+ AA +++ V+ VP+ S D +++ ++MP V V + +
Sbjct: 79 NVIIAGAGGAAGLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGA 138
Query: 172 NNAKN 176
+ AKN
Sbjct: 139 SGAKN 143
>pdb|2NSH|A Chain A, E. Coli Pure H45q Mutant Complexed With Nitro-Air
pdb|2NSJ|A Chain A, E. Coli Pure H45q Mutant Complexed With Cair
Length = 169
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 1/110 (0%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+M S D M AA VP+ ++++ + + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAQRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 169
G AHL G+ AA + + V+ VP+ S S D + SI +MP + V ++
Sbjct: 70 AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119
>pdb|2NSL|A Chain A, E. Coli Pure H45n Mutant Complexed With Cair
Length = 169
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+M S D M AA VP+ ++++ ++ + S+A SA+E G ++II G
Sbjct: 10 VAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSANRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASV 169
G AHL G+ AA + + V+ VP+ S S D + SI +MP + V ++
Sbjct: 70 AGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTL 119
>pdb|2H31|A Chain A, Crystal Structure Of Human Paics, A Bifunctional
Carboxylase And Synthetase In Purine Biosynthesis
Length = 425
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 66/136 (48%), Gaps = 3/136 (2%)
Query: 63 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG-D 121
++ S DL + +FG+P E+++ H+ E L + GI + V
Sbjct: 270 VLXGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVA 329
Query: 122 GVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYA 181
G L V + N+ VI P L+ DW DV +S+R+PS + ++V + + +A +A
Sbjct: 330 GRSNGLGPVXSGNTAYPVISCPPLTPDWGVQDVWSSLRLPSGLGCSTVL--SPEGSAQFA 387
Query: 182 VKVLGIADEDLLERIR 197
++ G+++ + ++R
Sbjct: 388 AQIFGLSNHLVWSKLR 403
>pdb|3RGG|A Chain A, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|B Chain B, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|C Chain C, Crystal Structure Of Treponema Denticola Pure Bound To Air
pdb|3RGG|D Chain D, Crystal Structure Of Treponema Denticola Pure Bound To Air
Length = 159
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA--LSAKERGIKI 116
P+V I+M S D+ A L FG+ Y I+I H+ + +S A +R K+
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 176
I G LSG + I P S+ ++ D+ +S+RMPS + A V KN
Sbjct: 62 YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 177 AALYAVKVLGIADEDLLERIRKYVE 201
AAL A ++ + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144
>pdb|3RG8|A Chain A, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|B Chain B, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|C Chain C, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|D Chain D, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|E Chain E, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|F Chain F, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|G Chain G, Crystal Structure Of Treponema Denticola Pure
pdb|3RG8|H Chain H, Crystal Structure Of Treponema Denticola Pure
Length = 159
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 5/145 (3%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA--LSAKERGIKI 116
P+V I+M S D+ A L FG+ Y I+I H+ + +S A +R K+
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRP-KL 61
Query: 117 IIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKN 176
I G LSG + I P S+ ++ D+ +S+RMPS + A V KN
Sbjct: 62 YITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKN 119
Query: 177 AALYAVKVLGIADEDLLERIRKYVE 201
AAL A ++ + D+++ + ++ Y+E
Sbjct: 120 AALLAARIFSLYDKEIADSVKSYME 144
>pdb|2ATE|A Chain A, Structure Of The Complex Of Pure With Nitroair
Length = 169
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
G AHL G AA + + V+ VP+ S S D + SI
Sbjct: 70 AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107
>pdb|1QCZ|A Chain A, Crystal Structure Of E. Coli Pure, An Unusual Mutase That
Catalyzes The Conversion Of N5-carboxyaminoimidazole
Ribonucleotide (n5-cair) To 4-carboxyaminoimidazole
Ribonucleotide (cair) In The Purine Biosynthetic Pathway
Length = 169
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 10 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 69
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
G AHL G AA + + V+ VP+ S S D + SI
Sbjct: 70 AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 107
>pdb|3KUU|A Chain A, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|B Chain B, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|C Chain C, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
pdb|3KUU|D Chain D, Structure Of The Pure Phosphoribosylaminoimidazole
Carboxylase Catalytic Subunit From Yersinia Pestis
Length = 174
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
+ I+ S D AA L+ VP+ ++++ H+ S+A A+ G+ +II G
Sbjct: 15 IAIVXGSKSDWATXQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAG 74
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
+G AHL G AA + + V+ VP+ S S D + SI
Sbjct: 75 NGGAAHLPGXLAAKTLVPVLGVPVQSAALSGVDSLYSI 112
>pdb|1D7A|A Chain A, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|B Chain B, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|C Chain C, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|D Chain D, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|L Chain L, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|M Chain M, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|N Chain N, Crystal Structure Of E. Coli Pure-Mononucleotide Complex.
pdb|1D7A|O Chain O, Crystal Structure Of E. Coli Pure-Mononucleotide Complex
Length = 161
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%)
Query: 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120
V I+ S D AA VP+ ++++ H+ + S+A SA+E G ++II G
Sbjct: 4 VAIVXGSKSDWATXQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVIIAG 63
Query: 121 DGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI 158
G AHL G AA + + V+ VP+ S S D + SI
Sbjct: 64 AGGAAHLPGXIAAKTLVPVLGVPVQSAALSGVDSLYSI 101
>pdb|3TRH|A Chain A, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|B Chain B, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|C Chain C, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|D Chain D, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|E Chain E, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|F Chain F, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|G Chain G, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|H Chain H, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|I Chain I, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|J Chain J, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|K Chain K, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|L Chain L, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|M Chain M, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|N Chain N, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|O Chain O, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
pdb|3TRH|P Chain P, Structure Of A Phosphoribosylaminoimidazole Carboxylase
Catalytic Subunit (Pure) From Coxiella Burnetii
Length = 169
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 3/140 (2%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
V I+ SD DL A L G+P+E IL H+ KE + + +A RG + I
Sbjct: 8 FVAILXGSDSDLSTXETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGCAVFIA 67
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSE-DDVINSIRMPSHVQVA--SVPRNNAKN 176
G+ AHL+G AA++ VI VP D ++++++ P V VA ++ + AKN
Sbjct: 68 AAGLAAHLAGTIAAHTLKPVIGVPXAGGSLGGLDALLSTVQXPGGVPVACTAIGKAGAKN 127
Query: 177 AALYAVKVLGIADEDLLERI 196
AA+ A +++ + D+ + +++
Sbjct: 128 AAILAAQIIALQDKSIAQKL 147
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 28.1 bits (61), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 77 AARTLSDFGVPYEIKILPPH 96
AAR S+FGV I +LPPH
Sbjct: 522 AARIQSEFGVTAAIDLLPPH 541
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 83 DFGVPYE---------IKILPPHQNCKEALSYALSAKERGIKI 116
DFG YE + I P KE S L A+ER +KI
Sbjct: 218 DFGATYENYCADITRVVSIGEPSDEVKEVHSIVLEAQERALKI 260
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,623,663
Number of Sequences: 62578
Number of extensions: 216240
Number of successful extensions: 442
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 39
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)