Query 028883
Match_columns 202
No_of_seqs 182 out of 1249
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 04:02:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028883.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028883hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0041 PurE Phosphoribosylcar 100.0 5.9E-63 1.3E-67 406.4 16.6 144 59-202 3-147 (162)
2 TIGR01162 purE phosphoribosyla 100.0 1.5E-60 3.3E-65 392.6 16.5 142 61-202 1-143 (156)
3 PF00731 AIRC: AIR carboxylase 100.0 3.8E-58 8.3E-63 376.2 13.8 144 59-202 1-145 (150)
4 PLN02948 phosphoribosylaminoim 100.0 4.6E-57 1E-61 430.6 18.6 182 14-202 373-555 (577)
5 COG1691 NCAIR mutase (PurE)-re 100.0 3.6E-35 7.8E-40 255.0 11.8 172 11-188 67-250 (254)
6 KOG2835 Phosphoribosylamidoimi 99.9 1.1E-28 2.4E-33 225.8 3.5 176 11-201 174-350 (373)
7 cd08170 GlyDH Glycerol dehydro 97.5 0.0007 1.5E-08 61.0 9.4 88 59-146 23-111 (351)
8 cd08550 GlyDH-like Glycerol_de 97.5 0.0007 1.5E-08 61.1 9.2 88 59-146 23-111 (349)
9 cd08171 GlyDH-like2 Glycerol d 97.2 0.0014 3.1E-08 59.1 8.4 88 59-146 23-112 (345)
10 PRK00843 egsA NAD(P)-dependent 97.2 0.0021 4.5E-08 58.4 9.4 86 59-146 35-121 (350)
11 cd08175 G1PDH Glycerol-1-phosp 97.2 0.0017 3.8E-08 58.5 8.8 87 59-146 24-114 (348)
12 PRK09423 gldA glycerol dehydro 97.2 0.0023 5E-08 58.2 9.5 88 59-146 30-118 (366)
13 cd08551 Fe-ADH iron-containing 97.2 0.002 4.3E-08 58.4 8.8 88 59-146 24-132 (370)
14 cd08195 DHQS Dehydroquinate sy 97.1 0.0037 8.1E-08 56.4 9.8 87 59-145 25-120 (345)
15 TIGR01357 aroB 3-dehydroquinat 97.1 0.0043 9.4E-08 55.8 9.9 87 59-145 21-116 (344)
16 cd08549 G1PDH_related Glycerol 97.0 0.0044 9.5E-08 55.9 9.2 87 59-146 25-114 (332)
17 cd08173 Gro1PDH Sn-glycerol-1- 97.0 0.0063 1.4E-07 54.7 9.9 87 59-147 26-113 (339)
18 cd07766 DHQ_Fe-ADH Dehydroquin 96.9 0.0062 1.3E-07 54.1 9.3 87 59-146 24-114 (332)
19 cd08185 Fe-ADH1 Iron-containin 96.9 0.0061 1.3E-07 55.7 9.3 88 59-146 26-140 (380)
20 cd08183 Fe-ADH2 Iron-containin 96.9 0.0065 1.4E-07 55.5 9.1 86 59-146 23-131 (374)
21 PRK00002 aroB 3-dehydroquinate 96.8 0.011 2.3E-07 53.9 9.9 87 59-145 32-127 (358)
22 cd08199 EEVS 2-epi-5-epi-valio 96.8 0.012 2.5E-07 54.1 10.0 87 59-145 27-123 (354)
23 cd08182 HEPD Hydroxyethylphosp 96.8 0.0088 1.9E-07 54.3 9.2 87 59-147 24-134 (367)
24 cd08197 DOIS 2-deoxy-scyllo-in 96.7 0.012 2.7E-07 54.0 10.0 87 59-145 24-119 (355)
25 cd08174 G1PDH-like Glycerol-1- 96.6 0.018 3.8E-07 51.6 10.1 83 59-147 26-110 (331)
26 cd08193 HVD 5-hydroxyvalerate 96.6 0.0049 1.1E-07 56.2 6.6 89 59-147 27-136 (376)
27 cd08194 Fe-ADH6 Iron-containin 96.6 0.012 2.6E-07 53.8 9.0 88 59-146 24-132 (375)
28 cd08186 Fe-ADH8 Iron-containin 96.5 0.01 2.3E-07 54.4 8.0 88 59-146 27-137 (383)
29 cd08176 LPO Lactadehyde:propan 96.5 0.012 2.5E-07 53.9 8.3 88 59-146 29-137 (377)
30 cd08187 BDH Butanol dehydrogen 96.5 0.014 3.1E-07 53.4 8.7 88 59-146 29-138 (382)
31 cd08189 Fe-ADH5 Iron-containin 96.4 0.015 3.3E-07 53.0 8.2 88 59-146 27-136 (374)
32 cd08181 PPD-like 1,3-propanedi 96.4 0.017 3.6E-07 52.6 8.3 88 59-146 26-134 (357)
33 TIGR02638 lactal_redase lactal 96.3 0.019 4.1E-07 52.7 8.5 89 59-147 30-141 (379)
34 cd08192 Fe-ADH7 Iron-containin 96.3 0.017 3.7E-07 52.5 8.1 89 59-147 25-138 (370)
35 PLN02834 3-dehydroquinate synt 96.3 0.032 7E-07 52.8 9.9 87 59-145 101-198 (433)
36 cd08178 AAD_C C-terminal alcoh 96.3 0.02 4.3E-07 52.8 8.3 74 59-132 22-98 (398)
37 PF00465 Fe-ADH: Iron-containi 96.3 0.013 2.9E-07 53.0 7.0 88 60-147 23-132 (366)
38 cd08172 GlyDH-like1 Glycerol d 96.2 0.013 2.7E-07 53.0 6.4 86 59-146 24-110 (347)
39 cd08177 MAR Maleylacetate redu 96.1 0.018 3.9E-07 51.9 7.0 87 59-146 24-111 (337)
40 cd08188 Fe-ADH4 Iron-containin 96.1 0.034 7.3E-07 50.9 8.7 88 59-146 29-137 (377)
41 PRK15454 ethanol dehydrogenase 96.1 0.025 5.5E-07 52.4 7.9 89 59-147 50-159 (395)
42 cd08179 NADPH_BDH NADPH-depend 96.0 0.045 9.9E-07 50.0 9.1 88 59-146 24-136 (375)
43 cd08169 DHQ-like Dehydroquinat 96.0 0.059 1.3E-06 49.1 9.7 85 59-145 24-118 (344)
44 cd08191 HHD 6-hydroxyhexanoate 95.9 0.047 1E-06 50.2 9.0 86 59-146 23-131 (386)
45 PRK10586 putative oxidoreducta 95.8 0.054 1.2E-06 49.8 8.9 86 59-147 35-121 (362)
46 PRK10624 L-1,2-propanediol oxi 95.8 0.052 1.1E-06 49.8 8.7 89 59-147 31-142 (382)
47 PRK09860 putative alcohol dehy 95.8 0.041 8.8E-07 50.7 8.0 88 59-146 32-140 (383)
48 cd08180 PDD 1,3-propanediol de 95.7 0.054 1.2E-06 48.7 8.3 87 59-146 23-119 (332)
49 cd08190 HOT Hydroxyacid-oxoaci 95.6 0.075 1.6E-06 49.5 8.9 68 59-126 24-93 (414)
50 PRK06203 aroB 3-dehydroquinate 95.3 0.13 2.9E-06 47.9 9.6 87 59-145 43-146 (389)
51 KOG2835 Phosphoribosylamidoimi 95.2 0.02 4.4E-07 53.7 3.8 103 4-146 219-322 (373)
52 PF13685 Fe-ADH_2: Iron-contai 95.2 0.042 9.1E-07 48.6 5.6 136 59-196 20-178 (250)
53 PRK14021 bifunctional shikimat 95.1 0.24 5.3E-06 47.9 10.9 85 60-145 211-304 (542)
54 cd08198 DHQS-like2 Dehydroquin 95.0 0.2 4.4E-06 46.6 9.8 87 59-145 31-134 (369)
55 PRK15138 aldehyde reductase; P 94.9 0.11 2.4E-06 48.0 7.8 66 59-126 30-98 (387)
56 cd08196 DHQS-like1 Dehydroquin 94.8 0.28 6.1E-06 45.1 10.2 83 59-145 20-111 (346)
57 PRK15424 propionate catabolism 94.8 0.66 1.4E-05 45.3 13.1 129 58-201 14-153 (538)
58 COG0371 GldA Glycerol dehydrog 94.5 0.14 3.1E-06 47.9 7.5 99 59-159 31-132 (360)
59 PRK13805 bifunctional acetalde 93.8 0.37 8.1E-06 49.0 9.5 86 59-146 481-602 (862)
60 cd08184 Fe-ADH3 Iron-containin 93.7 0.48 1E-05 43.5 9.2 84 60-146 27-133 (347)
61 COG1454 EutG Alcohol dehydroge 93.6 0.49 1.1E-05 44.5 9.1 88 59-146 30-138 (377)
62 COG2515 Acd 1-aminocyclopropan 93.2 0.4 8.7E-06 44.4 7.7 74 72-147 132-218 (323)
63 cd03028 GRX_PICOT_like Glutare 93.1 0.46 9.9E-06 35.0 6.6 74 59-159 8-85 (90)
64 PF04392 ABC_sub_bind: ABC tra 93.1 0.46 9.9E-06 41.5 7.7 83 60-144 1-89 (294)
65 PF06506 PrpR_N: Propionate ca 93.0 0.38 8.3E-06 39.5 6.7 81 98-187 18-101 (176)
66 PRK13055 putative lipid kinase 92.7 0.75 1.6E-05 41.5 8.8 77 66-145 14-94 (334)
67 PRK10653 D-ribose transporter 92.5 6 0.00013 33.7 14.1 87 55-143 23-114 (295)
68 cd06283 PBP1_RegR_EndR_KdgR_li 92.5 4.9 0.00011 32.8 12.6 78 61-142 2-84 (267)
69 TIGR03405 Phn_Fe-ADH phosphona 92.4 0.66 1.4E-05 42.3 8.0 87 59-147 24-137 (355)
70 cd03786 GT1_UDP-GlcNAc_2-Epime 92.1 1.3 2.8E-05 38.5 9.2 83 61-143 2-119 (363)
71 PF13407 Peripla_BP_4: Peripla 91.9 2.7 5.9E-05 34.5 10.5 81 61-142 1-86 (257)
72 TIGR03702 lip_kinase_YegS lipi 91.7 1.2 2.7E-05 39.1 8.7 81 62-146 4-90 (293)
73 TIGR02329 propionate_PrpR prop 91.7 2.7 6E-05 40.9 11.8 117 74-201 16-143 (526)
74 PRK01372 ddl D-alanine--D-alan 91.7 0.51 1.1E-05 41.0 6.2 77 59-144 5-90 (304)
75 cd01539 PBP1_GGBP Periplasmic 91.6 1.8 3.9E-05 37.3 9.5 83 60-142 1-88 (303)
76 PRK11914 diacylglycerol kinase 91.6 1.4 2.9E-05 38.9 8.8 84 59-146 9-98 (306)
77 cd01391 Periplasmic_Binding_Pr 91.4 1.8 3.9E-05 33.9 8.5 85 60-144 1-90 (269)
78 TIGR02417 fruct_sucro_rep D-fr 91.3 8.7 0.00019 33.0 14.6 112 57-186 59-175 (327)
79 TIGR00365 monothiol glutaredox 91.2 1.1 2.4E-05 33.6 6.9 74 59-159 12-89 (97)
80 cd06311 PBP1_ABC_sugar_binding 91.1 7.9 0.00017 32.1 12.8 83 61-143 2-92 (274)
81 TIGR00147 lipid kinase, YegS/R 91.0 1.2 2.6E-05 38.8 7.8 83 60-146 3-93 (293)
82 cd06280 PBP1_LacI_like_4 Ligan 90.5 8.8 0.00019 31.6 13.0 79 61-142 2-83 (263)
83 COG3199 Predicted inorganic po 90.2 2.5 5.4E-05 39.8 9.5 89 81-187 65-157 (355)
84 cd06275 PBP1_PurR Ligand-bindi 90.1 9.4 0.0002 31.3 12.3 82 61-144 2-87 (269)
85 cd01537 PBP1_Repressors_Sugar_ 89.8 5.9 0.00013 31.6 10.4 82 61-145 2-88 (264)
86 cd06318 PBP1_ABC_sugar_binding 89.5 4.3 9.2E-05 33.7 9.7 81 60-142 1-86 (282)
87 cd01575 PBP1_GntR Ligand-bindi 89.4 10 0.00022 30.9 12.7 78 61-142 2-84 (268)
88 PRK13337 putative lipid kinase 89.3 1.9 4E-05 38.2 7.8 75 66-144 13-90 (304)
89 PRK00861 putative lipid kinase 89.3 2.5 5.3E-05 37.2 8.5 76 66-146 14-91 (300)
90 cd06298 PBP1_CcpA_like Ligand- 89.3 11 0.00023 30.9 12.3 79 61-142 2-84 (268)
91 cd06305 PBP1_methylthioribose_ 89.3 3.9 8.4E-05 33.7 9.2 81 60-142 1-86 (273)
92 cd06273 PBP1_GntR_like_1 This 89.2 6.7 0.00014 32.2 10.5 78 61-142 2-84 (268)
93 cd06323 PBP1_ribose_binding Pe 89.1 11 0.00024 30.7 12.1 80 61-142 2-86 (268)
94 TIGR02189 GlrX-like_plant Glut 89.0 1.4 3.1E-05 33.2 5.9 74 60-159 9-83 (99)
95 cd06296 PBP1_CatR_like Ligand- 88.9 12 0.00025 30.8 12.7 78 61-142 2-84 (270)
96 cd01988 Na_H_Antiporter_C The 88.8 4 8.6E-05 30.0 8.1 53 72-127 56-108 (132)
97 cd06321 PBP1_ABC_sugar_binding 88.6 4.7 0.0001 33.3 9.3 82 61-142 2-88 (271)
98 COG0337 AroB 3-dehydroquinate 88.5 3.4 7.4E-05 38.9 9.1 135 60-199 35-202 (360)
99 TIGR03566 FMN_reduc_MsuE FMN r 88.4 12 0.00026 30.3 12.7 129 60-200 1-164 (174)
100 PRK13054 lipid kinase; Reviewe 88.4 3.2 7E-05 36.6 8.6 61 71-135 17-77 (300)
101 COG2984 ABC-type uncharacteriz 87.8 2.5 5.4E-05 39.3 7.7 80 60-141 32-114 (322)
102 cd01542 PBP1_TreR_like Ligand- 87.5 10 0.00022 30.9 10.5 78 61-142 2-84 (259)
103 cd06320 PBP1_allose_binding Pe 87.2 5.2 0.00011 33.2 8.7 84 60-143 1-89 (275)
104 PRK10481 hypothetical protein; 87.0 5.2 0.00011 35.2 9.0 80 59-141 130-211 (224)
105 cd06300 PBP1_ABC_sugar_binding 86.9 6.5 0.00014 32.5 9.1 84 60-143 1-92 (272)
106 cd06310 PBP1_ABC_sugar_binding 86.5 5.8 0.00013 32.7 8.6 81 60-142 1-88 (273)
107 TIGR02180 GRX_euk Glutaredoxin 86.2 2.8 6.1E-05 28.9 5.7 69 67-159 5-76 (84)
108 cd00578 L-fuc_L-ara-isomerases 86.1 13 0.00029 34.8 11.7 85 59-145 1-97 (452)
109 cd01538 PBP1_ABC_xylose_bindin 85.2 13 0.00027 31.6 10.3 80 61-142 2-86 (288)
110 cd06267 PBP1_LacI_sugar_bindin 85.0 16 0.00035 29.2 10.3 80 61-142 2-84 (264)
111 cd06292 PBP1_LacI_like_10 Liga 84.5 21 0.00046 29.4 12.0 80 61-142 2-89 (273)
112 PF00532 Peripla_BP_1: Peripla 84.4 27 0.00058 30.4 13.1 81 59-145 2-88 (279)
113 PRK10423 transcriptional repre 84.2 18 0.0004 30.9 10.9 84 57-142 55-142 (327)
114 cd01541 PBP1_AraR Ligand-bindi 83.9 23 0.0005 29.3 11.2 80 61-142 2-89 (273)
115 cd03419 GRX_GRXh_1_2_like Glut 83.5 6.6 0.00014 27.1 6.6 69 67-159 6-75 (82)
116 PF10096 DUF2334: Uncharacteri 83.5 4.3 9.3E-05 35.4 6.8 52 68-119 12-74 (243)
117 cd06293 PBP1_LacI_like_11 Liga 83.4 24 0.00052 29.1 10.9 78 61-142 2-84 (269)
118 cd06308 PBP1_sensor_kinase_lik 83.2 14 0.00031 30.5 9.5 81 60-142 1-87 (270)
119 TIGR02717 AcCoA-syn-alpha acet 83.1 8 0.00017 36.6 8.9 160 16-199 150-336 (447)
120 PRK11175 universal stress prot 83.0 9 0.00019 32.9 8.5 68 75-145 72-147 (305)
121 cd06301 PBP1_rhizopine_binding 82.8 17 0.00036 30.0 9.8 80 60-142 1-87 (272)
122 PRK09492 treR trehalose repres 82.8 29 0.00062 29.6 12.3 61 58-120 62-125 (315)
123 cd01540 PBP1_arabinose_binding 82.3 12 0.00026 31.2 8.9 80 60-142 1-85 (289)
124 PRK10703 DNA-binding transcrip 82.2 23 0.0005 30.6 10.8 80 59-142 60-145 (341)
125 PRK13059 putative lipid kinase 82.0 6.6 0.00014 34.7 7.5 76 66-146 13-92 (295)
126 cd06302 PBP1_LsrB_Quorum_Sensi 81.9 14 0.0003 31.6 9.3 81 60-142 1-87 (298)
127 cd06281 PBP1_LacI_like_5 Ligan 81.9 28 0.0006 28.8 11.7 79 61-142 2-85 (269)
128 TIGR02190 GlrX-dom Glutaredoxi 81.6 10 0.00022 26.9 7.1 72 57-158 6-78 (79)
129 cd01536 PBP1_ABC_sugar_binding 81.4 19 0.00042 29.0 9.5 81 60-142 1-86 (267)
130 PRK11303 DNA-binding transcrip 81.4 32 0.00069 29.5 11.3 83 57-142 60-147 (328)
131 PRK10076 pyruvate formate lyas 81.2 3.2 6.9E-05 35.7 5.1 59 59-118 132-211 (213)
132 PF06258 Mito_fiss_Elm1: Mitoc 81.2 35 0.00077 31.0 12.0 74 57-133 145-228 (311)
133 PRK14569 D-alanyl-alanine synt 80.9 3.8 8.2E-05 36.2 5.6 82 58-147 3-93 (296)
134 COG1597 LCB5 Sphingosine kinas 80.8 11 0.00023 34.0 8.4 76 66-145 14-92 (301)
135 TIGR02955 TMAO_TorT TMAO reduc 80.8 17 0.00037 31.0 9.4 81 60-142 1-87 (295)
136 PRK10727 DNA-binding transcrip 80.2 39 0.00084 29.4 12.4 64 57-122 58-124 (343)
137 PRK13057 putative lipid kinase 80.1 11 0.00023 33.0 8.1 70 72-146 13-84 (287)
138 cd06289 PBP1_MalI_like Ligand- 80.0 31 0.00067 28.1 12.3 80 61-142 2-85 (268)
139 cd06315 PBP1_ABC_sugar_binding 79.8 19 0.00042 30.3 9.3 81 60-142 2-87 (280)
140 TIGR01205 D_ala_D_alaTIGR D-al 79.7 7 0.00015 34.0 6.8 84 60-146 1-99 (315)
141 cd00860 ThrRS_anticodon ThrRS 79.7 12 0.00025 26.3 6.8 58 60-122 3-60 (91)
142 TIGR02634 xylF D-xylose ABC tr 79.6 12 0.00025 32.4 8.1 79 61-142 1-85 (302)
143 PRK10014 DNA-binding transcrip 79.6 40 0.00086 29.1 13.2 82 58-142 64-150 (342)
144 PF00763 THF_DHG_CYH: Tetrahyd 79.5 5.9 0.00013 30.9 5.6 54 59-112 31-85 (117)
145 KOG3857 Alcohol dehydrogenase, 79.5 7.6 0.00016 37.3 7.3 122 59-185 71-248 (465)
146 cd06322 PBP1_ABC_sugar_binding 79.4 20 0.00044 29.4 9.1 81 61-143 2-87 (267)
147 PRK02645 ppnK inorganic polyph 79.3 6 0.00013 35.8 6.4 82 59-144 4-89 (305)
148 PLN02958 diacylglycerol kinase 79.1 15 0.00032 35.3 9.3 103 17-135 82-189 (481)
149 cd06290 PBP1_LacI_like_9 Ligan 78.9 34 0.00074 28.0 12.6 78 61-142 2-83 (265)
150 COG0431 Predicted flavoprotein 78.9 36 0.00078 28.2 10.6 105 59-165 1-139 (184)
151 PF13528 Glyco_trans_1_3: Glyc 78.5 17 0.00037 31.2 8.7 77 57-146 191-280 (318)
152 PRK12361 hypothetical protein; 78.3 9.6 0.00021 36.7 7.8 77 66-147 254-332 (547)
153 TIGR02690 resist_ArsH arsenica 77.7 48 0.001 28.9 12.5 98 44-145 12-137 (219)
154 cd06317 PBP1_ABC_sugar_binding 77.2 30 0.00065 28.4 9.5 80 61-142 2-87 (275)
155 COG0695 GrxC Glutaredoxin and 77.0 10 0.00022 27.5 6.0 41 67-108 7-47 (80)
156 TIGR03590 PseG pseudaminic aci 76.7 15 0.00033 32.1 8.0 83 59-145 171-269 (279)
157 TIGR02181 GRX_bact Glutaredoxi 76.7 10 0.00022 26.4 5.7 65 68-159 6-71 (79)
158 cd06284 PBP1_LacI_like_6 Ligan 75.5 42 0.00091 27.2 12.3 79 61-142 2-83 (267)
159 TIGR01481 ccpA catabolite cont 75.3 52 0.0011 28.2 12.9 82 57-142 58-144 (329)
160 cd06312 PBP1_ABC_sugar_binding 75.3 20 0.00043 29.7 8.1 81 60-142 1-88 (271)
161 PRK10638 glutaredoxin 3; Provi 75.1 8.8 0.00019 27.3 5.1 64 68-158 9-73 (83)
162 PRK03708 ppnK inorganic polyph 75.1 5.4 0.00012 35.7 4.8 85 60-146 2-90 (277)
163 PRK10824 glutaredoxin-4; Provi 74.9 11 0.00024 29.8 6.1 74 59-159 15-92 (115)
164 cd04795 SIS SIS domain. SIS (S 74.9 25 0.00053 24.3 7.5 29 90-118 51-79 (87)
165 cd06274 PBP1_FruR Ligand bindi 74.8 46 0.00099 27.3 11.1 77 61-142 2-84 (264)
166 cd06309 PBP1_YtfQ_like Peripla 74.7 33 0.00071 28.4 9.2 80 61-142 2-86 (273)
167 cd06319 PBP1_ABC_sugar_binding 74.7 35 0.00075 28.1 9.3 80 61-142 2-86 (277)
168 PRK01966 ddl D-alanyl-alanine 74.7 4.9 0.00011 36.0 4.5 30 58-87 3-37 (333)
169 TIGR00236 wecB UDP-N-acetylglu 73.5 13 0.00028 32.9 6.8 78 59-142 30-116 (365)
170 cd03129 GAT1_Peptidase_E_like 73.4 51 0.0011 27.5 10.0 69 58-131 29-98 (210)
171 PF01177 Asp_Glu_race: Asp/Glu 73.4 12 0.00025 30.6 6.1 81 61-143 1-96 (216)
172 cd06324 PBP1_ABC_sugar_binding 73.4 39 0.00084 29.0 9.6 79 61-142 2-88 (305)
173 cd06316 PBP1_ABC_sugar_binding 73.4 29 0.00064 29.3 8.7 81 60-142 1-87 (294)
174 cd03029 GRX_hybridPRX5 Glutare 73.3 11 0.00024 25.8 5.1 30 65-94 5-34 (72)
175 cd01452 VWA_26S_proteasome_sub 73.1 43 0.00092 28.5 9.6 53 59-111 108-163 (187)
176 PRK11175 universal stress prot 72.9 14 0.00029 31.8 6.7 67 76-146 227-302 (305)
177 cd01574 PBP1_LacI Ligand-bindi 72.8 50 0.0011 26.9 10.6 81 61-142 2-85 (264)
178 PRK10936 TMAO reductase system 72.6 69 0.0015 28.4 13.8 89 52-142 40-134 (343)
179 PRK10116 universal stress prot 71.9 31 0.00067 26.0 7.8 62 82-146 74-141 (142)
180 PF01380 SIS: SIS domain SIS d 71.5 34 0.00073 25.3 7.8 83 60-147 6-109 (131)
181 cd04740 DHOD_1B_like Dihydroor 71.2 71 0.0015 28.0 11.3 36 59-96 91-127 (296)
182 COG1879 RbsB ABC-type sugar tr 71.1 50 0.0011 28.6 9.8 86 59-144 34-124 (322)
183 PRK14987 gluconate operon tran 71.1 68 0.0015 27.6 13.2 82 57-142 62-148 (331)
184 cd01545 PBP1_SalR Ligand-bindi 71.1 56 0.0012 26.7 12.3 81 61-143 2-87 (270)
185 cd06299 PBP1_LacI_like_13 Liga 70.7 57 0.0012 26.6 12.7 78 61-142 2-84 (265)
186 cd06306 PBP1_TorT-like TorT-li 70.5 49 0.0011 27.6 9.4 81 60-142 1-87 (268)
187 PRK00286 xseA exodeoxyribonucl 70.2 15 0.00032 34.4 6.7 123 16-141 88-229 (438)
188 cd07025 Peptidase_S66 LD-Carbo 69.9 16 0.00034 32.5 6.5 66 61-126 1-75 (282)
189 cd05212 NAD_bind_m-THF_DH_Cycl 69.9 9.9 0.00021 30.8 4.8 55 59-125 29-83 (140)
190 PTZ00062 glutaredoxin; Provisi 69.8 18 0.0004 31.1 6.7 74 59-159 113-190 (204)
191 cd03027 GRX_DEP Glutaredoxin ( 69.8 33 0.00072 23.5 7.6 68 61-157 3-71 (73)
192 PRK01231 ppnK inorganic polyph 69.7 9.8 0.00021 34.4 5.3 86 59-145 5-95 (295)
193 cd00763 Bacterial_PFK Phosphof 69.6 8.7 0.00019 35.2 5.0 48 98-146 77-125 (317)
194 PRK08862 short chain dehydroge 69.6 28 0.00062 29.1 7.7 26 59-86 5-30 (227)
195 PRK09526 lacI lac repressor; R 69.4 74 0.0016 27.4 12.7 84 57-142 62-150 (342)
196 cd06291 PBP1_Qymf_like Ligand 69.3 61 0.0013 26.5 10.1 77 61-142 2-81 (265)
197 PRK10355 xylF D-xylose transpo 69.2 52 0.0011 29.2 9.7 85 56-142 23-112 (330)
198 PLN02204 diacylglycerol kinase 69.2 21 0.00046 35.8 7.9 101 19-134 131-238 (601)
199 TIGR03568 NeuC_NnaA UDP-N-acet 69.0 35 0.00075 31.1 8.7 29 114-142 94-123 (365)
200 cd06313 PBP1_ABC_sugar_binding 68.9 35 0.00075 28.6 8.1 69 72-142 16-86 (272)
201 PRK15395 methyl-galactoside AB 68.6 60 0.0013 28.6 9.9 87 55-142 21-112 (330)
202 cd07943 DRE_TIM_HOA 4-hydroxy- 68.3 18 0.0004 31.4 6.5 67 64-131 104-172 (263)
203 PHA03050 glutaredoxin; Provisi 68.3 27 0.00059 26.9 6.8 74 59-159 13-91 (108)
204 cd00858 GlyRS_anticodon GlyRS 68.1 27 0.0006 26.7 6.8 58 59-122 27-86 (121)
205 PF02601 Exonuc_VII_L: Exonucl 68.1 58 0.0013 28.9 9.8 93 46-141 2-112 (319)
206 cd06286 PBP1_CcpB_like Ligand- 68.1 42 0.0009 27.4 8.3 59 61-121 2-63 (260)
207 cd05008 SIS_GlmS_GlmD_1 SIS (S 68.1 48 0.001 24.7 8.6 77 63-144 3-99 (126)
208 PRK05867 short chain dehydroge 67.6 36 0.00078 28.2 7.9 45 59-109 9-53 (253)
209 cd00859 HisRS_anticodon HisRS 67.6 34 0.00073 23.2 6.6 57 60-121 3-59 (91)
210 cd06278 PBP1_LacI_like_2 Ligan 67.4 66 0.0014 26.1 12.3 78 61-143 2-84 (266)
211 cd05014 SIS_Kpsf KpsF-like pro 67.3 50 0.0011 24.7 8.5 67 63-129 4-90 (128)
212 PRK05234 mgsA methylglyoxal sy 67.1 67 0.0014 26.1 11.7 124 59-200 4-137 (142)
213 PF01297 TroA: Periplasmic sol 67.1 34 0.00074 29.2 7.8 65 80-145 163-231 (256)
214 PRK12757 cell division protein 67.0 47 0.001 30.0 8.9 65 59-123 183-256 (256)
215 PF02954 HTH_8: Bacterial regu 66.9 3.5 7.6E-05 26.5 1.3 20 180-199 23-42 (42)
216 PRK09982 universal stress prot 66.9 28 0.00061 26.9 6.7 44 102-146 92-141 (142)
217 cd00861 ProRS_anticodon_short 66.9 16 0.00035 25.9 5.0 57 60-121 3-62 (94)
218 PRK03202 6-phosphofructokinase 66.7 8.8 0.00019 35.2 4.4 48 98-146 78-126 (320)
219 cd06314 PBP1_tmGBP Periplasmic 66.1 75 0.0016 26.3 12.7 80 61-142 2-85 (271)
220 PF02016 Peptidase_S66: LD-car 66.0 26 0.00056 31.2 7.1 81 61-142 1-97 (284)
221 PF03358 FMN_red: NADPH-depend 65.8 60 0.0013 25.0 8.5 50 60-111 2-70 (152)
222 COG0589 UspA Universal stress 65.3 53 0.0011 24.2 8.7 72 71-145 73-153 (154)
223 PRK13656 trans-2-enoyl-CoA red 65.2 34 0.00073 32.8 8.0 68 9-87 1-68 (398)
224 cd01989 STK_N The N-terminal d 65.0 44 0.00096 25.3 7.4 50 76-128 69-118 (146)
225 cd03418 GRX_GRXb_1_3_like Glut 64.7 37 0.0008 22.9 6.3 66 68-159 7-73 (75)
226 PF02882 THF_DHG_CYH_C: Tetrah 64.7 9 0.0002 31.9 3.7 63 73-145 48-110 (160)
227 TIGR00236 wecB UDP-N-acetylglu 64.6 36 0.00078 30.1 7.7 58 60-120 2-60 (365)
228 cd02911 arch_FMN Archeal FMN-b 64.5 51 0.0011 28.6 8.5 84 70-159 124-211 (233)
229 TIGR02482 PFKA_ATP 6-phosphofr 64.5 12 0.00026 34.1 4.7 48 98-146 76-125 (301)
230 cd06277 PBP1_LacI_like_1 Ligan 64.3 80 0.0017 25.9 12.3 68 70-142 17-86 (268)
231 cd03174 DRE_TIM_metallolyase D 64.2 36 0.00079 28.7 7.4 49 70-118 113-164 (265)
232 cd05564 PTS_IIB_chitobiose_lic 63.8 6.1 0.00013 29.7 2.3 83 61-153 2-89 (96)
233 PF00781 DAGK_cat: Diacylglyce 63.7 47 0.001 25.4 7.4 82 74-162 17-104 (130)
234 cd00764 Eukaryotic_PFK Phospho 63.4 34 0.00075 35.2 8.2 90 55-146 386-518 (762)
235 PF01761 DHQ_synthase: 3-dehyd 63.2 9.9 0.00021 33.9 3.9 51 95-145 8-64 (260)
236 cd00738 HGTP_anticodon HGTP an 63.1 31 0.00067 24.1 5.8 58 60-122 3-63 (94)
237 PRK14177 bifunctional 5,10-met 63.1 12 0.00026 34.1 4.5 67 73-145 142-233 (284)
238 PRK13951 bifunctional shikimat 62.8 12 0.00027 36.0 4.7 52 94-145 215-272 (488)
239 TIGR00853 pts-lac PTS system, 62.5 5.2 0.00011 30.3 1.7 78 59-146 4-85 (95)
240 PF03129 HGTP_anticodon: Antic 62.4 36 0.00078 24.3 6.1 55 61-120 2-59 (94)
241 cd06341 PBP1_ABC_ligand_bindin 62.2 86 0.0019 27.0 9.5 71 72-142 18-96 (341)
242 COG2984 ABC-type uncharacteriz 61.5 1.4E+02 0.0031 28.0 11.2 123 67-190 138-282 (322)
243 cd06282 PBP1_GntR_like_2 Ligan 61.5 86 0.0019 25.4 10.7 79 61-142 2-85 (266)
244 TIGR03567 FMN_reduc_SsuE FMN r 61.4 86 0.0019 25.3 11.5 97 60-160 1-129 (171)
245 PRK14180 bifunctional 5,10-met 61.3 12 0.00026 34.0 4.2 67 73-145 141-232 (282)
246 PRK09864 putative peptidase; P 61.3 1.2E+02 0.0027 28.2 10.9 98 64-201 255-354 (356)
247 PRK10310 PTS system galactitol 61.3 67 0.0014 24.0 7.9 71 60-146 4-77 (94)
248 PRK09701 D-allose transporter 61.1 1.1E+02 0.0024 26.5 13.5 85 58-142 24-113 (311)
249 cd03522 MoeA_like MoeA_like. T 60.9 49 0.0011 30.4 8.0 91 55-147 156-258 (312)
250 PRK14572 D-alanyl-alanine synt 60.9 10 0.00022 34.2 3.7 87 60-147 3-125 (347)
251 PRK14571 D-alanyl-alanine synt 60.5 36 0.00078 29.7 6.9 79 60-146 2-89 (299)
252 PF00462 Glutaredoxin: Glutare 60.2 32 0.0007 22.7 5.2 38 68-107 6-43 (60)
253 PRK15005 universal stress prot 59.9 72 0.0016 23.9 8.0 58 81-143 76-144 (144)
254 PRK08195 4-hyroxy-2-oxovalerat 59.6 60 0.0013 29.8 8.4 68 64-131 107-175 (337)
255 cd06353 PBP1_BmpA_Med_like Per 59.6 75 0.0016 27.4 8.7 86 56-146 118-210 (258)
256 PRK00061 ribH 6,7-dimethyl-8-r 59.5 30 0.00064 28.8 5.8 118 56-187 10-149 (154)
257 cd06295 PBP1_CelR Ligand bindi 58.9 1E+02 0.0022 25.4 12.8 80 59-144 4-95 (275)
258 PRK14187 bifunctional 5,10-met 58.7 15 0.00033 33.6 4.3 67 73-145 143-234 (294)
259 cd06270 PBP1_GalS_like Ligand 58.5 1E+02 0.0022 25.3 12.3 59 61-121 2-63 (268)
260 COG0205 PfkA 6-phosphofructoki 58.3 17 0.00037 34.0 4.7 48 98-145 79-127 (347)
261 PF01522 Polysacc_deac_1: Poly 58.2 32 0.0007 25.2 5.4 60 59-122 5-64 (123)
262 cd04509 PBP1_ABC_transporter_G 58.2 99 0.0021 25.0 9.6 72 73-144 22-99 (299)
263 PRK14168 bifunctional 5,10-met 57.5 17 0.00037 33.3 4.5 67 73-145 144-239 (297)
264 cd00363 PFK Phosphofructokinas 57.4 16 0.00035 33.6 4.4 46 100-145 79-130 (338)
265 cd06303 PBP1_LuxPQ_Quorum_Sens 57.2 1.2E+02 0.0025 25.5 10.0 63 60-122 1-69 (280)
266 PLN02616 tetrahydrofolate dehy 56.8 16 0.00034 34.6 4.2 67 73-145 214-305 (364)
267 PRK14190 bifunctional 5,10-met 56.7 38 0.00083 30.8 6.5 54 59-112 34-88 (284)
268 KOG1208 Dehydrogenases with di 56.6 30 0.00065 31.6 5.9 44 58-107 34-77 (314)
269 TIGR00736 nifR3_rel_arch TIM-b 56.5 93 0.002 27.4 8.8 93 70-166 119-219 (231)
270 COG0532 InfB Translation initi 56.4 39 0.00084 33.4 6.9 85 58-158 80-165 (509)
271 PRK06830 diphosphate--fructose 56.1 19 0.00041 34.8 4.7 55 91-146 150-211 (443)
272 TIGR02637 RhaS rhamnose ABC tr 56.1 1.3E+02 0.0027 25.6 9.4 80 62-142 2-87 (302)
273 PTZ00286 6-phospho-1-fructokin 56.0 21 0.00045 34.6 4.9 55 91-146 154-215 (459)
274 PF02006 DUF137: Protein of un 55.9 32 0.0007 29.7 5.6 72 74-147 20-100 (178)
275 TIGR02478 6PF1K_euk 6-phosphof 55.8 42 0.00091 34.4 7.3 86 59-146 390-518 (745)
276 cd07062 Peptidase_S66_mccF_lik 55.8 52 0.0011 29.5 7.2 67 60-126 2-79 (308)
277 TIGR01133 murG undecaprenyldip 55.6 81 0.0018 27.1 8.2 79 60-140 2-117 (348)
278 TIGR03217 4OH_2_O_val_ald 4-hy 55.5 69 0.0015 29.4 8.1 70 61-131 104-174 (333)
279 COG4126 Hydantoin racemase [Am 55.4 19 0.00042 32.1 4.3 52 89-141 145-202 (230)
280 cd06285 PBP1_LacI_like_7 Ligan 55.3 1.2E+02 0.0025 24.9 12.9 79 61-143 2-85 (265)
281 COG0381 WecB UDP-N-acetylgluco 55.3 86 0.0019 30.0 8.8 85 59-143 4-123 (383)
282 PHA03392 egt ecdysteroid UDP-g 55.2 1.7E+02 0.0037 28.3 11.1 134 59-201 297-444 (507)
283 cd00293 USP_Like Usp: Universa 55.1 71 0.0015 22.4 8.1 42 84-129 68-109 (130)
284 cd06354 PBP1_BmpA_PnrA_like Pe 55.1 1.1E+02 0.0024 25.7 8.8 80 60-142 1-87 (265)
285 PRK14172 bifunctional 5,10-met 55.0 19 0.00041 32.7 4.3 50 90-145 183-232 (278)
286 PLN02884 6-phosphofructokinase 54.8 20 0.00044 34.1 4.7 85 59-145 54-181 (411)
287 PF02608 Bmp: Basic membrane p 54.5 18 0.0004 32.0 4.1 91 58-148 126-225 (306)
288 PRK14186 bifunctional 5,10-met 54.4 19 0.00042 33.0 4.3 49 91-145 184-232 (297)
289 PLN02837 threonine-tRNA ligase 54.3 49 0.0011 32.8 7.4 58 59-122 517-574 (614)
290 TIGR02405 trehalos_R_Ecol treh 53.8 1.4E+02 0.0031 25.5 12.9 62 57-120 58-122 (311)
291 PRK11253 ldcA L,D-carboxypepti 53.7 59 0.0013 29.4 7.3 67 59-126 2-79 (305)
292 cd03045 GST_N_Delta_Epsilon GS 53.7 23 0.0005 23.9 3.7 35 72-106 10-44 (74)
293 PRK14182 bifunctional 5,10-met 53.6 21 0.00045 32.5 4.4 67 73-145 140-231 (282)
294 cd06325 PBP1_ABC_uncharacteriz 53.4 1.3E+02 0.0027 24.8 9.4 79 61-142 2-87 (281)
295 TIGR01037 pyrD_sub1_fam dihydr 53.0 96 0.0021 27.2 8.4 50 69-121 140-190 (300)
296 cd07937 DRE_TIM_PC_TC_5S Pyruv 52.7 71 0.0015 28.2 7.5 61 60-120 106-169 (275)
297 PRK14177 bifunctional 5,10-met 52.7 49 0.0011 30.2 6.6 61 59-119 35-97 (284)
298 PRK14071 6-phosphofructokinase 52.6 21 0.00045 33.3 4.3 47 99-146 93-141 (360)
299 cd05017 SIS_PGI_PMI_1 The memb 52.3 1E+02 0.0022 23.3 10.6 80 65-147 5-101 (119)
300 PRK05286 dihydroorotate dehydr 52.0 1.1E+02 0.0024 28.0 8.8 55 68-123 188-248 (344)
301 PRK13761 hypothetical protein; 51.8 36 0.00079 30.7 5.5 80 64-147 74-161 (248)
302 COG1609 PurR Transcriptional r 51.8 1.8E+02 0.0039 26.1 15.6 127 57-201 57-199 (333)
303 PRK10499 PTS system N,N'-diace 51.6 85 0.0018 24.1 6.9 85 60-153 5-91 (106)
304 PRK07109 short chain dehydroge 51.6 93 0.002 27.7 8.1 46 59-110 8-53 (334)
305 cd05567 PTS_IIB_mannitol PTS_I 51.4 86 0.0019 22.7 6.6 70 60-144 2-73 (87)
306 smart00854 PGA_cap Bacterial c 51.4 41 0.00089 28.6 5.6 47 70-119 158-211 (239)
307 PLN02516 methylenetetrahydrofo 51.3 22 0.00048 32.6 4.2 52 73-129 150-226 (299)
308 PF10137 TIR-like: Predicted n 51.3 99 0.0022 24.7 7.5 57 61-119 2-58 (125)
309 PRK14171 bifunctional 5,10-met 51.2 60 0.0013 29.7 6.9 54 59-112 34-88 (288)
310 PRK05447 1-deoxy-D-xylulose 5- 51.2 93 0.002 29.6 8.4 36 73-108 13-48 (385)
311 cd06294 PBP1_ycjW_transcriptio 51.1 1.3E+02 0.0029 24.4 12.8 67 72-142 21-89 (270)
312 cd03059 GST_N_SspA GST_N famil 51.0 32 0.0007 23.0 4.1 27 70-96 8-34 (73)
313 PRK14072 6-phosphofructokinase 50.9 25 0.00055 33.4 4.6 47 98-145 88-141 (416)
314 PRK15408 autoinducer 2-binding 50.8 1.9E+02 0.0041 26.0 13.7 85 57-143 22-112 (336)
315 cd04740 DHOD_1B_like Dihydroor 50.7 79 0.0017 27.7 7.4 49 69-120 137-186 (296)
316 PRK14188 bifunctional 5,10-met 50.6 61 0.0013 29.6 6.9 61 59-119 34-96 (296)
317 PF00148 Oxidored_nitro: Nitro 50.5 74 0.0016 28.9 7.4 93 53-153 139-232 (398)
318 PRK14186 bifunctional 5,10-met 50.5 55 0.0012 30.0 6.6 54 59-112 34-88 (297)
319 cd06300 PBP1_ABC_sugar_binding 50.4 1.4E+02 0.0031 24.5 10.2 120 58-185 125-251 (272)
320 PF11965 DUF3479: Domain of un 50.4 59 0.0013 27.4 6.3 83 61-145 3-94 (164)
321 PRK14166 bifunctional 5,10-met 50.3 25 0.00054 32.0 4.3 67 73-145 140-231 (282)
322 TIGR02667 moaB_proteo molybden 50.3 1.1E+02 0.0025 25.0 7.9 115 58-184 4-143 (163)
323 PF05036 SPOR: Sporulation rel 50.2 75 0.0016 21.2 6.3 59 59-118 3-74 (76)
324 TIGR02194 GlrX_NrdH Glutaredox 50.2 63 0.0014 22.2 5.5 33 71-105 9-41 (72)
325 PRK10017 colanic acid biosynth 50.1 2.3E+02 0.005 26.9 11.5 62 129-199 339-403 (426)
326 PRK14170 bifunctional 5,10-met 49.9 27 0.00058 31.8 4.5 52 73-129 140-216 (284)
327 PF06490 FleQ: Flagellar regul 49.9 1.1E+02 0.0025 23.3 7.9 89 61-162 2-95 (109)
328 smart00046 DAGKc Diacylglycero 49.5 1.2E+02 0.0026 23.3 8.1 77 80-163 19-101 (124)
329 COG1570 XseA Exonuclease VII, 49.4 1.2E+02 0.0026 29.5 9.0 113 45-161 122-250 (440)
330 PRK10329 glutaredoxin-like pro 49.4 97 0.0021 22.3 7.0 35 69-105 9-43 (81)
331 cd07944 DRE_TIM_HOA_like 4-hyd 49.3 1.2E+02 0.0026 26.8 8.3 56 65-120 102-158 (266)
332 cd01422 MGS Methylglyoxal synt 49.2 1.2E+02 0.0026 23.4 9.8 95 63-169 3-107 (115)
333 PF03853 YjeF_N: YjeF-related 49.0 1.3E+02 0.0028 24.5 8.0 60 56-115 23-83 (169)
334 cd01019 ZnuA Zinc binding prot 48.9 1E+02 0.0022 27.2 7.9 61 81-142 193-257 (286)
335 PF02350 Epimerase_2: UDP-N-ac 48.7 44 0.00096 30.4 5.7 82 59-143 10-98 (346)
336 PRK14179 bifunctional 5,10-met 48.5 67 0.0015 29.3 6.8 54 59-112 34-88 (284)
337 PRK14173 bifunctional 5,10-met 48.4 29 0.00062 31.7 4.4 49 91-145 181-229 (287)
338 PRK14180 bifunctional 5,10-met 48.4 59 0.0013 29.6 6.4 54 59-112 33-87 (282)
339 cd05565 PTS_IIB_lactose PTS_II 48.2 51 0.0011 25.3 5.2 80 65-153 8-92 (99)
340 TIGR02483 PFK_mixed phosphofru 48.1 30 0.00066 31.7 4.6 46 100-146 81-127 (324)
341 PRK14169 bifunctional 5,10-met 48.0 28 0.00062 31.6 4.3 49 91-145 182-230 (282)
342 cd03060 GST_N_Omega_like GST_N 47.9 43 0.00093 22.7 4.3 29 69-97 7-35 (71)
343 PRK07475 hypothetical protein; 47.5 60 0.0013 28.3 6.1 76 59-140 123-223 (245)
344 cd06353 PBP1_BmpA_Med_like Per 47.3 1.3E+02 0.0029 25.9 8.2 57 63-121 5-65 (258)
345 PF04028 DUF374: Domain of unk 47.3 74 0.0016 23.3 5.7 59 59-122 10-68 (74)
346 cd04739 DHOD_like Dihydroorota 46.8 1.9E+02 0.0042 26.1 9.5 35 84-121 162-196 (325)
347 PF00682 HMGL-like: HMGL-like 46.7 84 0.0018 26.4 6.8 104 60-165 82-208 (237)
348 PF00582 Usp: Universal stress 46.5 1E+02 0.0022 21.7 6.4 57 84-143 76-140 (140)
349 PRK08085 gluconate 5-dehydroge 46.3 1.2E+02 0.0026 25.0 7.5 45 59-109 9-53 (254)
350 COG3340 PepE Peptidase E [Amin 46.2 42 0.00091 29.9 4.9 61 57-123 31-94 (224)
351 cd05013 SIS_RpiR RpiR-like pro 46.1 1.2E+02 0.0025 22.3 8.4 67 62-128 16-102 (139)
352 PRK07063 short chain dehydroge 46.0 1.3E+02 0.0029 24.8 7.8 42 59-106 7-48 (260)
353 PRK02277 orotate phosphoribosy 45.9 55 0.0012 27.6 5.5 79 64-142 20-114 (200)
354 PRK14172 bifunctional 5,10-met 45.9 75 0.0016 28.9 6.6 54 59-112 34-88 (278)
355 PRK14189 bifunctional 5,10-met 45.9 30 0.00066 31.5 4.2 61 75-145 172-232 (285)
356 cd06288 PBP1_sucrose_transcrip 45.8 1.6E+02 0.0035 23.9 12.2 79 61-142 2-84 (269)
357 cd01987 USP_OKCHK USP domain i 45.7 1.1E+02 0.0023 22.4 6.5 58 72-134 49-106 (124)
358 PLN02251 pyrophosphate-depende 45.2 35 0.00076 34.0 4.8 48 98-145 175-228 (568)
359 PRK14190 bifunctional 5,10-met 45.0 38 0.00082 30.8 4.6 35 90-129 183-217 (284)
360 cd00758 MoCF_BD MoCF_BD: molyb 44.9 69 0.0015 24.9 5.6 99 75-183 22-126 (133)
361 PRK13394 3-hydroxybutyrate deh 44.9 1.4E+02 0.003 24.5 7.7 26 59-86 7-32 (262)
362 PRK14191 bifunctional 5,10-met 44.9 77 0.0017 28.9 6.6 61 59-119 33-95 (285)
363 cd02811 IDI-2_FMN Isopentenyl- 44.9 2.4E+02 0.0052 25.6 12.2 49 67-119 159-208 (326)
364 PRK14169 bifunctional 5,10-met 44.8 78 0.0017 28.8 6.6 54 59-112 32-86 (282)
365 cd03031 GRX_GRX_like Glutaredo 44.8 78 0.0017 25.9 6.1 27 70-96 15-41 (147)
366 PRK14192 bifunctional 5,10-met 44.8 1.3E+02 0.0028 27.1 7.9 54 59-112 35-89 (283)
367 COG0011 Uncharacterized conser 44.7 68 0.0015 25.1 5.4 47 63-111 12-62 (100)
368 PF03060 NMO: Nitronate monoox 44.4 1.1E+02 0.0025 27.6 7.6 99 59-172 114-224 (330)
369 PRK15456 universal stress prot 44.3 95 0.0021 23.6 6.2 40 103-143 95-142 (142)
370 PRK14174 bifunctional 5,10-met 44.3 78 0.0017 29.0 6.5 54 59-112 33-87 (295)
371 PRK14183 bifunctional 5,10-met 44.2 39 0.00084 30.8 4.6 52 73-129 140-216 (281)
372 PF07881 Fucose_iso_N1: L-fuco 44.1 98 0.0021 26.6 6.7 85 58-142 3-107 (171)
373 KOG0725 Reductases with broad 44.1 1.2E+02 0.0026 26.8 7.5 67 59-127 8-103 (270)
374 PRK10401 DNA-binding transcrip 43.9 2.2E+02 0.0047 24.7 13.1 63 57-121 58-123 (346)
375 PRK14176 bifunctional 5,10-met 43.8 93 0.002 28.5 6.9 61 59-119 40-102 (287)
376 cd06268 PBP1_ABC_transporter_L 43.8 1.3E+02 0.0029 24.2 7.3 59 84-142 37-96 (298)
377 COG2086 FixA Electron transfer 43.7 2.1E+02 0.0046 25.7 9.1 82 60-145 58-147 (260)
378 PRK06139 short chain dehydroge 43.4 1.2E+02 0.0025 27.3 7.5 25 99-123 68-94 (330)
379 cd05566 PTS_IIB_galactitol PTS 43.3 1.2E+02 0.0026 21.6 8.5 69 60-145 2-72 (89)
380 PF09587 PGA_cap: Bacterial ca 43.3 65 0.0014 27.6 5.6 45 75-119 171-222 (250)
381 PLN02564 6-phosphofructokinase 43.2 42 0.0009 32.9 4.9 54 91-145 154-214 (484)
382 PRK14168 bifunctional 5,10-met 43.2 84 0.0018 28.8 6.6 61 59-119 35-97 (297)
383 PRK14184 bifunctional 5,10-met 43.1 44 0.00096 30.5 4.8 50 90-145 186-235 (286)
384 COG4002 Predicted phosphotrans 43.1 76 0.0016 28.6 6.0 57 59-128 138-206 (256)
385 PRK02155 ppnK NAD(+)/NADH kina 43.1 58 0.0012 29.3 5.5 86 59-145 6-96 (291)
386 PF13380 CoA_binding_2: CoA bi 43.0 96 0.0021 23.8 6.1 63 60-122 2-88 (116)
387 cd02810 DHOD_DHPD_FMN Dihydroo 42.9 1.5E+02 0.0033 25.7 7.9 64 57-122 98-171 (289)
388 PRK14193 bifunctional 5,10-met 42.8 79 0.0017 28.8 6.3 54 59-112 34-88 (284)
389 PRK09230 cytosine deaminase; P 42.6 1.8E+02 0.004 27.1 8.9 100 71-174 194-315 (426)
390 PRK13527 glutamine amidotransf 42.6 1.4E+02 0.003 24.8 7.4 34 60-93 2-35 (200)
391 PRK02842 light-independent pro 42.6 1.8E+02 0.0039 27.3 8.9 84 58-153 166-249 (427)
392 PRK07259 dihydroorotate dehydr 42.4 1.8E+02 0.004 25.5 8.5 46 71-119 142-188 (301)
393 PRK14178 bifunctional 5,10-met 42.3 95 0.0021 28.2 6.7 54 59-112 28-82 (279)
394 PF01012 ETF: Electron transfe 42.2 73 0.0016 25.3 5.4 84 59-144 34-122 (164)
395 PRK14171 bifunctional 5,10-met 42.2 40 0.00087 30.8 4.3 50 90-145 184-233 (288)
396 PRK14184 bifunctional 5,10-met 42.2 93 0.002 28.4 6.7 54 59-112 33-87 (286)
397 COG3414 SgaB Phosphotransferas 42.1 60 0.0013 24.8 4.7 59 60-131 3-63 (93)
398 TIGR00676 fadh2 5,10-methylene 42.1 1.2E+02 0.0025 26.8 7.2 53 73-125 46-98 (272)
399 PRK14181 bifunctional 5,10-met 41.8 86 0.0019 28.7 6.4 54 59-112 28-82 (287)
400 cd00570 GST_N_family Glutathio 41.7 66 0.0014 20.1 4.3 30 71-100 9-38 (71)
401 PRK09739 hypothetical protein; 41.6 2E+02 0.0043 23.7 8.3 60 59-122 4-88 (199)
402 cd01840 SGNH_hydrolase_yrhL_li 41.6 80 0.0017 24.6 5.5 39 58-96 50-88 (150)
403 PRK10222 PTS system L-ascorbat 41.5 67 0.0014 23.8 4.8 42 75-127 5-48 (85)
404 cd01985 ETF The electron trans 41.4 1.9E+02 0.0041 23.3 8.5 79 59-141 37-120 (181)
405 PLN02897 tetrahydrofolate dehy 41.3 39 0.00085 31.8 4.2 52 73-129 197-273 (345)
406 PF13409 GST_N_2: Glutathione 41.3 59 0.0013 22.3 4.2 28 72-99 3-30 (70)
407 PRK10792 bifunctional 5,10-met 41.2 37 0.0008 31.0 3.9 49 91-145 185-233 (285)
408 cd07948 DRE_TIM_HCS Saccharomy 41.2 1.8E+02 0.0038 25.7 8.2 49 72-120 112-161 (262)
409 PRK07565 dihydroorotate dehydr 41.1 2.4E+02 0.0053 25.4 9.2 85 82-172 162-273 (334)
410 cd01965 Nitrogenase_MoFe_beta_ 41.1 1.5E+02 0.0032 27.6 8.0 94 56-153 153-261 (428)
411 PRK14173 bifunctional 5,10-met 41.1 93 0.002 28.4 6.5 61 59-119 31-93 (287)
412 TIGR02470 sucr_synth sucrose s 41.1 4.4E+02 0.0096 27.5 14.6 112 73-198 604-722 (784)
413 PRK14182 bifunctional 5,10-met 40.9 98 0.0021 28.2 6.6 54 59-112 32-86 (282)
414 TIGR03127 RuMP_HxlB 6-phospho 40.8 1.9E+02 0.0041 23.2 8.7 82 59-146 31-127 (179)
415 PRK13600 putative ribosomal pr 40.6 55 0.0012 24.7 4.2 31 61-91 31-61 (84)
416 PRK08277 D-mannonate oxidoredu 40.3 1.6E+02 0.0035 24.6 7.5 26 59-86 10-35 (278)
417 PRK15118 universal stress glob 40.2 1.6E+02 0.0035 22.2 7.8 61 82-146 75-141 (144)
418 PRK07478 short chain dehydroge 40.2 1.6E+02 0.0035 24.3 7.4 24 60-85 7-30 (254)
419 PRK03692 putative UDP-N-acetyl 40.0 1.4E+02 0.003 26.4 7.3 61 59-123 106-167 (243)
420 PRK10426 alpha-glucosidase; Pr 39.9 1.2E+02 0.0026 30.5 7.6 58 62-120 211-289 (635)
421 PRK14166 bifunctional 5,10-met 39.9 96 0.0021 28.3 6.4 61 59-119 32-94 (282)
422 PRK09627 oorA 2-oxoglutarate-a 39.9 59 0.0013 30.4 5.2 70 60-136 277-348 (375)
423 COG4026 Uncharacterized protei 39.9 1.5E+02 0.0032 27.1 7.4 57 59-119 7-64 (290)
424 cd06304 PBP1_BmpA_like Peripla 39.8 2.2E+02 0.0047 23.6 9.2 59 60-121 1-64 (260)
425 cd00537 MTHFR Methylenetetrahy 39.7 1.2E+02 0.0026 26.4 6.8 53 72-124 45-97 (274)
426 PRK11041 DNA-binding transcrip 39.6 1.2E+02 0.0027 25.5 6.7 119 58-185 152-279 (309)
427 PRK06940 short chain dehydroge 39.6 1.5E+02 0.0032 25.3 7.3 11 114-124 77-87 (275)
428 cd03145 GAT1_cyanophycinase Ty 39.5 2.2E+02 0.0047 24.2 8.2 66 58-129 29-99 (217)
429 cd06332 PBP1_aromatic_compound 39.4 2.4E+02 0.0051 23.9 9.2 70 72-142 18-95 (333)
430 PRK14189 bifunctional 5,10-met 39.3 1.1E+02 0.0023 28.0 6.6 61 59-119 34-96 (285)
431 PRK14453 chloramphenicol/florf 39.2 1.4E+02 0.003 27.7 7.5 64 60-123 252-329 (347)
432 PRK10927 essential cell divisi 39.2 2.7E+02 0.0058 26.2 9.2 66 58-123 245-319 (319)
433 cd03041 GST_N_2GST_N GST_N fam 39.1 94 0.002 21.5 5.0 23 72-94 11-33 (77)
434 TIGR00737 nifR3_yhdG putative 39.0 2.1E+02 0.0046 25.5 8.4 88 69-160 114-213 (319)
435 cd07304 Chorismate_synthase Ch 38.9 83 0.0018 29.6 6.0 87 76-179 132-250 (344)
436 PRK14187 bifunctional 5,10-met 38.8 1.2E+02 0.0026 27.8 6.9 54 59-112 34-88 (294)
437 PRK10792 bifunctional 5,10-met 38.8 98 0.0021 28.2 6.3 61 59-119 35-97 (285)
438 cd05710 SIS_1 A subgroup of th 38.7 1.7E+02 0.0037 22.1 8.8 66 63-128 3-89 (120)
439 PRK10415 tRNA-dihydrouridine s 38.7 2.3E+02 0.0049 25.7 8.7 104 69-175 116-232 (321)
440 TIGR02257 cobalto_cobN cobalto 38.7 1.8E+02 0.0038 31.6 9.0 85 59-145 25-117 (1122)
441 PRK06200 2,3-dihydroxy-2,3-dih 38.6 1.4E+02 0.003 24.9 6.8 41 59-105 6-46 (263)
442 smart00642 Aamy Alpha-amylase 38.6 1.3E+02 0.0028 24.7 6.5 50 69-118 16-88 (166)
443 PRK00311 panB 3-methyl-2-oxobu 38.5 1.8E+02 0.0039 26.1 7.8 67 74-143 119-203 (264)
444 cd06347 PBP1_ABC_ligand_bindin 38.5 1.9E+02 0.0041 24.5 7.7 65 59-124 136-202 (334)
445 cd01994 Alpha_ANH_like_IV This 38.4 1.7E+02 0.0037 24.6 7.4 56 60-120 89-144 (194)
446 PF14528 LAGLIDADG_3: LAGLIDAD 38.4 39 0.00084 23.5 3.0 26 67-92 27-52 (77)
447 PRK08265 short chain dehydroge 38.3 1.6E+02 0.0034 24.7 7.2 41 59-105 6-46 (261)
448 COG2901 Fis Factor for inversi 38.2 27 0.00058 27.4 2.2 20 180-199 76-95 (98)
449 PRK14175 bifunctional 5,10-met 38.1 1E+02 0.0022 28.1 6.2 61 59-119 34-96 (286)
450 cd07939 DRE_TIM_NifV Streptomy 38.0 1.1E+02 0.0023 26.6 6.2 69 61-129 85-168 (259)
451 cd04738 DHOD_2_like Dihydrooro 37.7 2.5E+02 0.0054 25.4 8.7 54 68-122 179-238 (327)
452 cd06602 GH31_MGAM_SI_GAA This 37.7 1.3E+02 0.0028 27.4 7.0 51 70-120 22-86 (339)
453 PRK14167 bifunctional 5,10-met 37.6 98 0.0021 28.4 6.1 54 59-112 33-87 (297)
454 cd03789 GT1_LPS_heptosyltransf 37.5 73 0.0016 27.2 5.1 29 114-146 199-227 (279)
455 PRK09432 metF 5,10-methylenete 37.4 1.2E+02 0.0026 27.3 6.7 51 73-123 70-120 (296)
456 PRK06555 pyrophosphate--fructo 37.4 49 0.0011 31.7 4.3 45 100-145 99-150 (403)
457 PRK00430 fis global DNA-bindin 37.2 28 0.0006 26.5 2.2 21 180-200 73-93 (95)
458 TIGR02477 PFKA_PPi diphosphate 37.2 51 0.0011 32.6 4.5 127 16-145 27-199 (539)
459 PRK06124 gluconate 5-dehydroge 37.1 1.8E+02 0.004 23.8 7.3 43 59-107 11-53 (256)
460 PRK00726 murG undecaprenyldiph 37.0 2.8E+02 0.0062 24.1 12.8 30 114-146 253-282 (357)
461 PRK07097 gluconate 5-dehydroge 36.9 1.8E+02 0.0038 24.3 7.2 26 59-86 10-35 (265)
462 cd02977 ArsC_family Arsenate R 36.8 87 0.0019 23.2 4.8 40 69-108 7-47 (105)
463 cd06350 PBP1_GPCR_family_C_lik 36.8 2.6E+02 0.0056 24.0 8.4 64 59-123 161-227 (348)
464 PRK09545 znuA high-affinity zi 36.7 2E+02 0.0044 25.9 8.0 68 76-144 211-283 (311)
465 cd06271 PBP1_AglR_RafR_like Li 36.6 2.3E+02 0.0049 22.9 9.9 78 61-142 2-88 (268)
466 PRK09417 mogA molybdenum cofac 36.6 2.6E+02 0.0057 23.8 8.3 122 59-183 4-144 (193)
467 PRK09389 (R)-citramalate synth 36.6 1.8E+02 0.004 28.1 8.1 72 61-132 89-175 (488)
468 PF02302 PTS_IIB: PTS system, 36.6 1.4E+02 0.0029 21.1 5.7 56 60-124 1-58 (90)
469 PRK14194 bifunctional 5,10-met 36.5 54 0.0012 30.1 4.3 54 73-131 142-220 (301)
470 PRK12759 bifunctional gluaredo 36.5 1.1E+02 0.0024 28.8 6.4 37 63-101 4-40 (410)
471 cd06386 PBP1_NPR_C_like Ligand 36.5 1.3E+02 0.0029 27.0 6.8 65 59-126 138-207 (387)
472 PRK11041 DNA-binding transcrip 36.3 2.6E+02 0.0056 23.5 13.5 62 57-120 34-98 (309)
473 PRK08643 acetoin reductase; Va 36.3 1.6E+02 0.0034 24.2 6.8 24 60-85 3-26 (256)
474 PRK07074 short chain dehydroge 36.3 2.2E+02 0.0047 23.5 7.6 25 60-86 3-27 (257)
475 PF04123 DUF373: Domain of unk 36.2 38 0.00082 31.7 3.3 48 40-87 42-100 (344)
476 cd03048 GST_N_Ure2p_like GST_N 36.1 84 0.0018 21.7 4.4 25 72-96 10-34 (81)
477 cd05005 SIS_PHI Hexulose-6-pho 36.1 2.3E+02 0.005 22.8 9.1 83 59-147 34-131 (179)
478 PRK13523 NADPH dehydrogenase N 36.0 1.9E+02 0.004 26.6 7.7 51 73-123 194-250 (337)
479 PF02514 CobN-Mg_chel: CobN/Ma 35.9 2.3E+02 0.005 30.6 9.3 90 56-145 69-168 (1098)
480 PRK14191 bifunctional 5,10-met 35.9 75 0.0016 29.0 5.1 47 73-128 169-215 (285)
481 cd00765 Pyrophosphate_PFK Phos 35.9 58 0.0013 32.4 4.7 48 98-145 151-204 (550)
482 KOG1752 Glutaredoxin and relat 35.8 1.4E+02 0.003 23.3 5.9 73 61-159 16-89 (104)
483 PRK08177 short chain dehydroge 35.7 2.4E+02 0.0052 22.9 7.8 26 99-124 57-82 (225)
484 PF06506 PrpR_N: Propionate ca 35.7 96 0.0021 25.3 5.3 75 58-146 77-151 (176)
485 cd03056 GST_N_4 GST_N family, 35.7 76 0.0016 21.0 4.0 24 72-95 10-33 (73)
486 PRK05876 short chain dehydroge 35.5 2.2E+02 0.0048 24.3 7.7 26 59-86 6-31 (275)
487 PRK05437 isopentenyl pyrophosp 35.5 2.8E+02 0.006 25.6 8.8 50 66-119 166-216 (352)
488 PRK14467 ribosomal RNA large s 35.5 2.1E+02 0.0044 26.7 8.0 61 60-120 256-325 (348)
489 PRK08213 gluconate 5-dehydroge 35.5 2.1E+02 0.0045 23.6 7.4 40 59-104 12-51 (259)
490 TIGR02990 ectoine_eutA ectoine 35.3 1.4E+02 0.003 26.2 6.5 93 59-160 121-223 (239)
491 COG1744 Med Uncharacterized AB 35.2 1E+02 0.0022 28.5 5.9 89 58-147 161-254 (345)
492 cd07381 MPP_CapA CapA and rela 35.2 85 0.0019 26.5 5.1 45 72-119 162-213 (239)
493 TIGR00442 hisS histidyl-tRNA s 35.2 1.2E+02 0.0026 27.6 6.4 60 57-121 321-380 (397)
494 cd01715 ETF_alpha The electron 35.2 2.4E+02 0.0051 22.6 8.3 78 59-141 30-112 (168)
495 PLN03028 pyrophosphate--fructo 35.1 55 0.0012 33.0 4.4 49 98-146 158-212 (610)
496 TIGR00677 fadh2_euk methylenet 35.0 1.6E+02 0.0034 26.4 7.0 66 60-125 32-99 (281)
497 PF13727 CoA_binding_3: CoA-bi 35.0 91 0.002 23.9 4.8 45 74-119 130-174 (175)
498 cd01017 AdcA Metal binding pro 35.0 1.1E+02 0.0023 26.8 5.8 65 81-146 185-253 (282)
499 PRK00865 glutamate racemase; P 35.0 51 0.0011 28.9 3.7 81 59-142 6-97 (261)
500 PF09752 DUF2048: Uncharacteri 35.0 52 0.0011 31.0 4.0 87 59-146 92-207 (348)
No 1
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.9e-63 Score=406.42 Aligned_cols=144 Identities=43% Similarity=0.694 Sum_probs=141.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL 138 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P 138 (202)
++|+|||||+|||++|++|+++|++|||+||++|+||||||+++.+|+++++++|++|||++||++||||||+|++|++|
T Consensus 3 ~~V~IIMGS~SD~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lP 82 (162)
T COG0041 3 PKVGIIMGSKSDWDTMKKAAEILEEFGVPYEVRVVSAHRTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLP 82 (162)
T ss_pred ceEEEEecCcchHHHHHHHHHHHHHcCCCeEEEEEeccCCHHHHHHHHHHHHHCCCeEEEecCcchhhcchhhhhcCCCC
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883 139 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202 (202)
Q Consensus 139 VIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~ 202 (202)
|||||+++..|+|+| |+|++|||+|+|||||+|++++|||++|+|||++.|++|++||++||++
T Consensus 83 ViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a~NAallAa~ILa~~d~~l~~kl~~~r~~ 147 (162)
T COG0041 83 VIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNAANAALLAAQILAIKDPELAEKLAEFREA 147 (162)
T ss_pred eEeccCccccccchHHHHHHhcCCCCCeeEEEeecchhhHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999973
No 2
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=100.00 E-value=1.5e-60 Score=392.64 Aligned_cols=142 Identities=48% Similarity=0.748 Sum_probs=139.8
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEE
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI 140 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVI 140 (202)
|+|||||+||+++|+|+.++|++|||+||++|+|+||+|+++.+|+++++++|++|||++|||+||||||+|++|++|||
T Consensus 1 V~IimGS~SD~~~~~~a~~~L~~~gi~~dv~V~SaHRtp~~~~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t~~PVI 80 (156)
T TIGR01162 1 VGIIMGSDSDLPTMKKAADILEEFGIPYELRVVSAHRTPELMLEYAKEAEERGIKVIIAGAGGAAHLPGMVAALTPLPVI 80 (156)
T ss_pred CEEEECcHhhHHHHHHHHHHHHHcCCCeEEEEECcccCHHHHHHHHHHHHHCCCeEEEEeCCccchhHHHHHhccCCCEE
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883 141 RVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202 (202)
Q Consensus 141 gVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~ 202 (202)
|||++++.++|+| ||||+|||+|+||+||+|||++|||++|+|||+++|++||+||++||++
T Consensus 81 gvP~~~~~l~G~daLlS~vqmP~gvpvatv~I~~~~nAa~~AaqIl~~~d~~l~~kl~~~r~~ 143 (156)
T TIGR01162 81 GVPVPSKALSGLDSLLSIVQMPSGVPVATVAIGNAGNAALLAAQILGIKDPELAEKLKEYREN 143 (156)
T ss_pred EecCCccCCCCHHHHHHHhcCCCCCeeEEEEcCChhHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999988899999 9999999999999999999999999999999999999999999999973
No 3
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=100.00 E-value=3.8e-58 Score=376.20 Aligned_cols=144 Identities=40% Similarity=0.633 Sum_probs=128.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL 138 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P 138 (202)
|+|+|||||+||+++++|+.++|++||++||++|+|+||+|+++.+|+++++++|++|||++||++|||||++||+|++|
T Consensus 1 p~V~Ii~gs~SD~~~~~~a~~~L~~~gi~~~~~V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t~~P 80 (150)
T PF00731_consen 1 PKVAIIMGSTSDLPIAEEAAKTLEEFGIPYEVRVASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLTTLP 80 (150)
T ss_dssp -EEEEEESSGGGHHHHHHHHHHHHHTT-EEEEEE--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHSSS-
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHHHcCCCEEEEEEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheeccCCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883 139 VIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202 (202)
Q Consensus 139 VIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~ 202 (202)
|||||+++++++|+| |+|++|||+|+||+||+|||++|||++|+|||+++|+++|+||++||++
T Consensus 81 VIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~~d~~l~~kl~~~~~~ 145 (150)
T PF00731_consen 81 VIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILALKDPELREKLRAYREK 145 (150)
T ss_dssp EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred EEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999999999999974
No 4
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=100.00 E-value=4.6e-57 Score=430.64 Aligned_cols=182 Identities=40% Similarity=0.644 Sum_probs=169.0
Q ss_pred eecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE
Q 028883 14 VSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL 93 (202)
Q Consensus 14 ~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~ 93 (202)
+.+|||++++.|.++++++++.+++.-+ .. ....+...++|+|||||+||+++|++|+++|++|||+|+++|+
T Consensus 373 rkmGhV~~~g~~~~e~~~~~~~~~~~~~------~~-~~~~~~~~~~v~i~~gs~sd~~~~~~~~~~l~~~g~~~~~~v~ 445 (577)
T PLN02948 373 RKMGHITVVGPSAAEVEARLDQLLAEES------AD-PDALPKGTPLVGIIMGSDSDLPTMKDAAEILDSFGVPYEVTIV 445 (577)
T ss_pred CeeEEEEEecCCHHHHHHHHHHHHhhhc------cC-CCCCCCCCCeEEEEECchhhHHHHHHHHHHHHHcCCCeEEEEE
Confidence 7899999999999999999999872111 11 2333445689999999999999999999999999999999999
Q ss_pred ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecC
Q 028883 94 PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRN 172 (202)
Q Consensus 94 SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~ 172 (202)
||||+|+++.+|+++++++|++|||++|||+||||||+||+|++||||||++++.++|+| ||||||||+|+||+||+||
T Consensus 446 sahr~~~~~~~~~~~~~~~~~~v~i~~ag~~~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~ 525 (577)
T PLN02948 446 SAHRTPERMFSYARSAHSRGLQVIIAGAGGAAHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIG 525 (577)
T ss_pred CCccCHHHHHHHHHHHHHCCCCEEEEEcCccccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecC
Confidence 999999999999999999999999999999999999999999999999999988999999 9999999999999999999
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHhC
Q 028883 173 NAKNAALYAVKVLGIADEDLLERIRKYVEE 202 (202)
Q Consensus 173 n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~~ 202 (202)
|++|||++|+|||+++|++||+||++||++
T Consensus 526 ~~~~aa~~a~~i~~~~~~~~~~~~~~~~~~ 555 (577)
T PLN02948 526 NATNAGLLAVRMLGASDPDLLDKMEAYQED 555 (577)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999973
No 5
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=100.00 E-value=3.6e-35 Score=255.03 Aligned_cols=172 Identities=21% Similarity=0.248 Sum_probs=144.8
Q ss_pred eeeeecCceeEecCChhhhhhcc-ccCcCCCCCCcc-ccccC-CCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCC
Q 028883 11 VRTVSRGTIPVLASSNGSATSRR-KDDSSVREPSTV-FEEEN-PNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVP 87 (202)
Q Consensus 11 ~~~~~~ghi~v~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~-~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~ 87 (202)
-+.+.++|+++.++-..|..+-+ +.+.+++|+.++ +.... .++.+...++|+|+++++||+|+++||+.+++.+|++
T Consensus 67 ~~~~~~~~~~l~tR~~~e~~~~l~~~~~d~~y~e~ar~~~i~~~~~~~~~~g~vgvlsAGTSDlPvAeEa~~tae~lG~e 146 (254)
T COG1691 67 EVLLEKNGIALATRVSPELLEALKDRFADVEYNEAARTLAIKDPNYEPKKGGKVGVLSAGTSDLPVAEEAAVTAEELGVE 146 (254)
T ss_pred HHHHHcCCeeeeecCCHHHHHHhhccccceEEcccCcEEEecCCCCCcccCceEEEEecCCCCcchHHHHHHHHHHhCce
Confidence 45677899999998755555555 666777777776 44443 4456666689999999999999999999999999998
Q ss_pred ----eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCC---CCChhh-HHHhhc
Q 028883 88 ----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE---DWSEDD-VINSIR 159 (202)
Q Consensus 88 ----~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~---~l~G~D-LlS~vq 159 (202)
||++|++.||....+.+... ++.+++|++|||+++||+++||+++.||||||++.+ .++|+. ||+|||
T Consensus 147 v~~~~DvGVAGiHRLl~~l~r~~~----~~~~~lIVvAGMEGaLPsvvagLvD~PVIavPTsVGYG~g~gGiaaLltMLq 222 (254)
T COG1691 147 VQKVYDVGVAGIHRLLSALKRLKI----EDADVLIVVAGMEGALPSVVAGLVDVPVIAVPTSVGYGAGGGGIAALLTMLQ 222 (254)
T ss_pred EEEEEeeccchHHhhhhHHHHHHh----hCCCeEEEEcccccchHHHHHhccCCCeEecccccccCcCCccHHHHHHHHH
Confidence 89999999999987766543 568999999999999999999999999999999975 467899 999999
Q ss_pred C-CCCCeeeEEecCChhhHHHHHHHHHccC
Q 028883 160 M-PSHVQVASVPRNNAKNAALYAVKVLGIA 188 (202)
Q Consensus 160 M-P~GvpVatV~I~n~~NAAl~Aa~IL~~~ 188 (202)
+ .|| +++|||||+++||.+|+||+...
T Consensus 223 SCspG--v~VVNIdNGfGAa~~A~~I~r~~ 250 (254)
T COG1691 223 SCSPG--VGVVNIDNGFGAAVLAVQILRRI 250 (254)
T ss_pred hcCCC--eEEEEccCchHHHHHHHHHHHHH
Confidence 6 444 58899999999999999999864
No 6
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.1e-28 Score=225.76 Aligned_cols=176 Identities=25% Similarity=0.223 Sum_probs=162.8
Q ss_pred eeeeecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Q 028883 11 VRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEI 90 (202)
Q Consensus 11 ~~~~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev 90 (202)
-+.+-+||++..++++.|.+.+.+....+ . ...-.+.+.++|++++|.++|..++..++.+++++|.
T Consensus 174 ~k~~~~~h~~~I~d~~ie~gv~~~~~~~~---------~----a~~v~~~~~~r~~~~~d~~im~D~~~~~d~~~vt~e~ 240 (373)
T KOG2835|consen 174 LKAAWAGHNCAISDMKIEFGVDVTLGEIV---------L----ASDVIDNDSWRMWPDGDGRIMKDKKVYFDLDEVTNEG 240 (373)
T ss_pred hhhhhcCCccccccchhhhccchhhhhhh---------h----hhcccchhheEEcccCCcceeeeeeEEeccccCCccc
Confidence 35677899999999999999998776411 1 1123367999999999999999999999999999999
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEE
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASV 169 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV 169 (202)
.+.++||+|..+..|+..+.+||++++|++||.++|+|+++++.++.| |||+....++|.| +||+||||.|+||+||
T Consensus 241 ~ilv~~~~t~~msr~a~~a~~~~~~~~iaga~~~~~~p~~v~a~f~~~--gvp~~~~~~dg~~~~l~~V~~~~~~~~~~v 318 (373)
T KOG2835|consen 241 LILVDENTTPVMSRYATSAKSRGVVLWIAGAYKAGHEPLMVDAEFERP--GVPVVFVAVDGRDNLLSIVQMPNGVPVATV 318 (373)
T ss_pred eEEEeecCchhHhhhhhhcccCceEEEEeccCCCCCChhhHHhhcccc--CcceeeeecccccccccceeccCCcccccc
Confidence 999999999999999999999999999999999999999999999999 9999999999999 9999999999999999
Q ss_pred ecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 028883 170 PRNNAKNAALYAVKVLGIADEDLLERIRKYVE 201 (202)
Q Consensus 170 ~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~ 201 (202)
+|+|++|||++|+|||+..|+.||.|++.|+.
T Consensus 319 ~v~~p~~aa~~aar~l~~~~~~i~gk~~~~~l 350 (373)
T KOG2835|consen 319 AVNNPENAALLAARILGLSNEMITGKMRSYQL 350 (373)
T ss_pred ccCCHHHHHHHHHHHHHhhhhHHHHHHHHhcc
Confidence 99999999999999999999999999999874
No 7
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=97.49 E-value=0.0007 Score=60.98 Aligned_cols=88 Identities=17% Similarity=0.123 Sum_probs=74.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~ 137 (202)
.++.||+|+.+--...++..+.|++.|+.+.+.....+-+.+.+.+.++.+++.++++||++-|++. -.+-.+|....+
T Consensus 23 ~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~~~ 102 (351)
T cd08170 23 KRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGGKTLDTAKAVADYLGA 102 (351)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCchhhHHHHHHHHHcCC
Confidence 4789999876665889999999999999876666777888899999999998888999999999965 466677777889
Q ss_pred cEEEecCCC
Q 028883 138 LVIRVPLLS 146 (202)
Q Consensus 138 PVIgVP~~~ 146 (202)
|+|.||+..
T Consensus 103 P~iaIPTTa 111 (351)
T cd08170 103 PVVIVPTIA 111 (351)
T ss_pred CEEEeCCcc
Confidence 999999974
No 8
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=97.47 E-value=0.0007 Score=61.11 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=73.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~ 137 (202)
.++.||++..+-....++..+.|++-|+.+++.+.+-+-+.+.+.+.++.+++.++++||++-|++ --++..+|....+
T Consensus 23 ~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~ia~~~~~ 102 (349)
T cd08550 23 SKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGGKTLDTAKAVADRLDK 102 (349)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 468889987665577889999999989887776667777888999999999888899999998885 4577788888899
Q ss_pred cEEEecCCC
Q 028883 138 LVIRVPLLS 146 (202)
Q Consensus 138 PVIgVP~~~ 146 (202)
|+|.||+..
T Consensus 103 p~i~VPTta 111 (349)
T cd08550 103 PIVIVPTIA 111 (349)
T ss_pred CEEEeCCcc
Confidence 999999964
No 9
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=97.23 E-value=0.0014 Score=59.09 Aligned_cols=88 Identities=11% Similarity=0.033 Sum_probs=72.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQ 136 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~ 136 (202)
.++.||+|..+-....++..+.|++-|+.+.+ .....+-+-+.+.+..+.+++.++++||++-|++ --++..+|....
T Consensus 23 ~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGGs~~D~aK~ia~~~~ 102 (345)
T cd08171 23 KKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGGKAIDTVKVLADKLG 102 (345)
T ss_pred CEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHHHHHcC
Confidence 57999999877667788889999998997653 3456677888888998888888899999998885 457778888888
Q ss_pred CcEEEecCCC
Q 028883 137 ILVIRVPLLS 146 (202)
Q Consensus 137 ~PVIgVP~~~ 146 (202)
+|+|.||+..
T Consensus 103 ~p~i~VPTt~ 112 (345)
T cd08171 103 KPVFTFPTIA 112 (345)
T ss_pred CCEEEecCcc
Confidence 9999999964
No 10
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=97.23 E-value=0.0021 Score=58.36 Aligned_cols=86 Identities=19% Similarity=0.128 Sum_probs=73.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~~ 137 (202)
.++.||++..+--...++..+.|++.| .+.+. ...|.+.+.+.+.++.+.+.+.++||++.|+ ..-+++.+|-+...
T Consensus 35 ~~~livtd~~~~~~~~~~l~~~l~~~~-~~~~~-~~~~~t~~~v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~vA~~rgi 112 (350)
T PRK00843 35 GRALIVTGPTTKKIAGDRVEENLEDAG-DVEVV-IVDEATMEEVEKVEEKAKDVNAGFLIGVGGGKVIDVAKLAAYRLGI 112 (350)
T ss_pred CeEEEEECCcHHHHHHHHHHHHHHhcC-CeeEE-eCCCCCHHHHHHHHHHhhccCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 479999998887667788888999888 77654 5679999999999999988889999999887 45599999988899
Q ss_pred cEEEecCCC
Q 028883 138 LVIRVPLLS 146 (202)
Q Consensus 138 PVIgVP~~~ 146 (202)
|+|.||+..
T Consensus 113 p~I~IPTT~ 121 (350)
T PRK00843 113 PFISVPTAA 121 (350)
T ss_pred CEEEeCCCc
Confidence 999999974
No 11
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=97.22 E-value=0.0017 Score=58.46 Aligned_cols=87 Identities=15% Similarity=0.117 Sum_probs=68.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccC---CCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhhhc
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAAN 134 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH---Rtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~ 134 (202)
.++.||++..+--...++..+.|++.|+.+++...... .+.+.+.+.++.+.+ ++++||++.|++ --.+..+|.+
T Consensus 24 ~~~livtd~~~~~~~~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~-~~d~IIaIGGGs~~D~aK~vA~~ 102 (348)
T cd08175 24 KKALIVADENTYAAAGKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELER-DTDLIIAVGSGTINDITKYVSYK 102 (348)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhc-cCCEEEEECCcHHHHHHHHHHHh
Confidence 36889988755444478899999999998765543333 888888898888866 789999999885 4678888888
Q ss_pred cCCcEEEecCCC
Q 028883 135 SQILVIRVPLLS 146 (202)
Q Consensus 135 T~~PVIgVP~~~ 146 (202)
..+|+|.||+..
T Consensus 103 ~~~p~i~IPTTa 114 (348)
T cd08175 103 TGIPYISVPTAP 114 (348)
T ss_pred cCCCEEEecCcc
Confidence 899999999974
No 12
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=97.21 E-value=0.0023 Score=58.22 Aligned_cols=88 Identities=16% Similarity=0.126 Sum_probs=72.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~ 137 (202)
.++.||++..+--...++..+.|++.|+.+.+.....+-+-+.+.+.++.+.+.++++||++.|++ --++..+|....+
T Consensus 30 ~~~livtd~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~ 109 (366)
T PRK09423 30 KRALVIADEFVLGIVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGGKTLDTAKAVADYLGV 109 (366)
T ss_pred CEEEEEEChhHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHcCC
Confidence 478899987665557888888999999987555567788888889999988888899999999885 5678888888899
Q ss_pred cEEEecCCC
Q 028883 138 LVIRVPLLS 146 (202)
Q Consensus 138 PVIgVP~~~ 146 (202)
|+|.||+..
T Consensus 110 p~i~IPTta 118 (366)
T PRK09423 110 PVVIVPTIA 118 (366)
T ss_pred CEEEeCCcc
Confidence 999999964
No 13
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=97.19 E-value=0.002 Score=58.36 Aligned_cols=88 Identities=16% Similarity=0.180 Sum_probs=70.8
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhcc
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANS 135 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T 135 (202)
.+|.||+|..+-. ...++..+.|++-|+.+.+. -...|-+.+.+.+.++.++..++++||++-|++. -++..+|...
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~ 103 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLA 103 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4799999987755 78889999999988876532 3557899999999999998888999999988754 4566666654
Q ss_pred ------------------CCcEEEecCCC
Q 028883 136 ------------------QILVIRVPLLS 146 (202)
Q Consensus 136 ------------------~~PVIgVP~~~ 146 (202)
.+|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~p~i~VPTt~ 132 (370)
T cd08551 104 TNPGDIWDYEGGKPVIKPALPLIAIPTTA 132 (370)
T ss_pred hCCCcHHHHhCcccccCCCCCEEEecCCC
Confidence 78999999975
No 14
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=97.12 E-value=0.0037 Score=56.44 Aligned_cols=87 Identities=20% Similarity=0.270 Sum_probs=73.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA 131 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv 131 (202)
.++.||++....-.+.++..+.|+..|+.+++-+... +.+.+.+.+..+.+.+.++ ++||++.|+ ..-+++++
T Consensus 25 ~~~livtd~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~v 104 (345)
T cd08195 25 SKILIVTDENVAPLYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFV 104 (345)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHH
Confidence 4789999887776889999999999999887666553 7888999999988888777 899999888 56688898
Q ss_pred hh--ccCCcEEEecCC
Q 028883 132 AA--NSQILVIRVPLL 145 (202)
Q Consensus 132 A~--~T~~PVIgVP~~ 145 (202)
|+ ....|+|.||+.
T Consensus 105 A~~~~rgip~i~VPTT 120 (345)
T cd08195 105 AATYMRGIDFIQIPTT 120 (345)
T ss_pred HHHHhcCCCeEEcchh
Confidence 84 678999999996
No 15
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=97.08 E-value=0.0043 Score=55.82 Aligned_cols=87 Identities=21% Similarity=0.193 Sum_probs=68.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhcCc---eEEEEecCCcC-chhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGI---KIIIVGDGVEA-HLSGVA 131 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~g~---~ViIa~AG~aa-~Lpgvv 131 (202)
.+|.||++...--...++..+.|++.|+++.+.+... +.+.+.+.+.++.+.+.++ ++||++.|++. -+++.+
T Consensus 21 ~~~livtd~~~~~~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 100 (344)
T TIGR01357 21 SKLVIITDETVADLYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGGVVGDLAGFV 100 (344)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcChHHHHHHHHH
Confidence 5789999877665688889999999999887655542 5566788888888877665 89999988854 478888
Q ss_pred hh--ccCCcEEEecCC
Q 028883 132 AA--NSQILVIRVPLL 145 (202)
Q Consensus 132 A~--~T~~PVIgVP~~ 145 (202)
|+ ...+|+|.||+.
T Consensus 101 A~~~~~~~p~i~VPTT 116 (344)
T TIGR01357 101 AATYMRGIRFIQVPTT 116 (344)
T ss_pred HHHHccCCCEEEecCc
Confidence 74 457899999995
No 16
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=97.01 E-value=0.0044 Score=55.89 Aligned_cols=87 Identities=9% Similarity=-0.037 Sum_probs=68.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhcc
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANS 135 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T 135 (202)
.+|.||+++..-....++..+.|++-|+.+++.... .+-+.+.+.+..+.+.. ++++||++-|+ ..-+++++|...
T Consensus 25 ~kvlivtd~~~~~~~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~~~~~~~~~-~~d~IIaiGGGsv~D~aK~iA~~~ 103 (332)
T cd08549 25 SKIMIVCGNNTYKVAGKEIIERLESNNFTKEVLERDSLLIPDEYELGEVLIKLDK-DTEFLLGIGSGTIIDLVKFVSFKV 103 (332)
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHHHhhc-CCCEEEEECCcHHHHHHHHHHHHc
Confidence 379999997775556788999999988876653222 33356778888888776 78999999887 567889999888
Q ss_pred CCcEEEecCCC
Q 028883 136 QILVIRVPLLS 146 (202)
Q Consensus 136 ~~PVIgVP~~~ 146 (202)
.+|+|.||+..
T Consensus 104 gip~I~VPTT~ 114 (332)
T cd08549 104 GKPFISVPTAP 114 (332)
T ss_pred CCCEEEeCCCc
Confidence 99999999974
No 17
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=96.98 E-value=0.0063 Score=54.75 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=71.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~~ 137 (202)
.++.||++...-....++..+.|++.| .+.+.+ ..+=+.+.+.+..+.+.+.++++||++.|+ ..-+++.+|.+..+
T Consensus 26 ~~~liv~d~~~~~~~~~~v~~~l~~~~-~~~~~~-~~~~~~~~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~a~~~~~ 103 (339)
T cd08173 26 GRVLVVTGPTTKSIAGKKVEALLEDEG-EVDVVI-VEDATYEEVEKVESSARDIGADFVIGVGGGRVIDVAKVAAYKLGI 103 (339)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcC-CeEEEE-eCCCCHHHHHHHHHHhhhcCCCEEEEeCCchHHHHHHHHHHhcCC
Confidence 478899988776678889999999988 776654 356678888899988888889999998887 55688888888899
Q ss_pred cEEEecCCCC
Q 028883 138 LVIRVPLLSE 147 (202)
Q Consensus 138 PVIgVP~~~~ 147 (202)
|+|.||+..+
T Consensus 104 p~i~iPTT~~ 113 (339)
T cd08173 104 PFISVPTAAS 113 (339)
T ss_pred CEEEecCccc
Confidence 9999999743
No 18
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=96.93 E-value=0.0062 Score=54.08 Aligned_cols=87 Identities=16% Similarity=0.148 Sum_probs=69.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhhhhcc-
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANS- 135 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T- 135 (202)
.++.||++...--...++..+.|++. +.+.+. ....+.+.+.+.+.++.+.+.++++||++.|++ --++..+|...
T Consensus 24 ~~~liv~~~~~~~~~~~~v~~~l~~~-~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~ia~~~~ 102 (332)
T cd07766 24 DRALVVSDEGVVKGVGEKVADSLKKL-IAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGGSTLDTAKAVAALLN 102 (332)
T ss_pred CeEEEEeCCchhhhHHHHHHHHHHhc-CcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCchHHHHHHHHHHHhc
Confidence 36888887765448888999999887 766543 345678888999999998888899999988874 56777888877
Q ss_pred -CCcEEEecCCC
Q 028883 136 -QILVIRVPLLS 146 (202)
Q Consensus 136 -~~PVIgVP~~~ 146 (202)
.+|+|.||+..
T Consensus 103 ~~~p~i~iPTt~ 114 (332)
T cd07766 103 RGLPIIIVPTTA 114 (332)
T ss_pred CCCCEEEEeCCC
Confidence 89999999975
No 19
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=96.91 E-value=0.0061 Score=55.70 Aligned_cols=88 Identities=14% Similarity=0.145 Sum_probs=68.7
Q ss_pred CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhhc
Q 028883 59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAAN 134 (202)
Q Consensus 59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~~ 134 (202)
.+|.||+|..+ .....++..+.|++.|+.+.+ .-...+-+.+.+.+.++.+++.++++||++-|++..=.+ .++..
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~iD~aK~ia~~ 105 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSMDTAKAIAFM 105 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 48999999877 667889999999999998764 234567888999999988888889999999998754222 33221
Q ss_pred -----------------------cCCcEEEecCCC
Q 028883 135 -----------------------SQILVIRVPLLS 146 (202)
Q Consensus 135 -----------------------T~~PVIgVP~~~ 146 (202)
..+|+|.||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 140 (380)
T cd08185 106 AANEGDYWDYIFGGTGKGKPPPEKALPIIAITTTA 140 (380)
T ss_pred hhCCCCHHHHhcccccccccCCCCCCCEEEEcCCC
Confidence 258999999964
No 20
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=96.87 E-value=0.0065 Score=55.48 Aligned_cols=86 Identities=13% Similarity=0.081 Sum_probs=65.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc---
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN--- 134 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~--- 134 (202)
.++.||++..+= ..++....|++.|+.+.+.-....-+.+.+.+.++.+++.++++||++-|++.. .+..+|..
T Consensus 23 ~r~livtd~~~~--~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ia~~~~~ 100 (374)
T cd08183 23 RRVLLVTGASSL--RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGGSVIDAGKAIAALLPN 100 (374)
T ss_pred CcEEEEECCchH--HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHHcC
Confidence 479999987653 888899999999998765433446666788889888888899999999999654 33344432
Q ss_pred -------------------cCCcEEEecCCC
Q 028883 135 -------------------SQILVIRVPLLS 146 (202)
Q Consensus 135 -------------------T~~PVIgVP~~~ 146 (202)
..+|+|.||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 131 (374)
T cd08183 101 PGSVLDYLEGVGRGLPLDGPPLPFIAIPTTA 131 (374)
T ss_pred CCCHHHHHhccCccccCCCCCCCEEEecCCC
Confidence 368999999974
No 21
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=96.79 E-value=0.011 Score=53.86 Aligned_cols=87 Identities=22% Similarity=0.268 Sum_probs=70.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA 131 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv 131 (202)
.++.||++....-...++..+.|+..|+.+.+.+.+ .+.+.+.+.+..+.+.+.++ ++||++.|+ ..-+++++
T Consensus 32 ~~~livtd~~~~~~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~i 111 (358)
T PRK00002 32 KKVAIVTDETVAPLYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGGVIGDLAGFA 111 (358)
T ss_pred CeEEEEECCchHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHH
Confidence 479999998876678899999999999988765433 36677888898888877666 899998887 55678888
Q ss_pred hh--ccCCcEEEecCC
Q 028883 132 AA--NSQILVIRVPLL 145 (202)
Q Consensus 132 A~--~T~~PVIgVP~~ 145 (202)
|+ ....|+|.||+.
T Consensus 112 A~~~~~gip~i~IPTT 127 (358)
T PRK00002 112 AATYMRGIRFIQVPTT 127 (358)
T ss_pred HHHhcCCCCEEEcCch
Confidence 84 567899999996
No 22
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=96.77 E-value=0.012 Score=54.05 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=71.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc----eEEEEecCC-cCchhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI----KIIIVGDGV-EAHLSGV 130 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~----~ViIa~AG~-aa~Lpgv 130 (202)
.++.||++....--+.++..+.|+..|++++.-+.. .+.+.+.+.+..+.+.+.++ ++||++.|+ ..-++++
T Consensus 27 ~~~lvVtd~~v~~~~~~~v~~~l~~~g~~~~~~v~~~~e~~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~ 106 (354)
T cd08199 27 GRRFVVVDQNVDKLYGKKLREYFAHHNIPLTILVLRAGEAAKTMDTVLKIVDALDAFGISRRREPVLAIGGGVLTDVAGL 106 (354)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHH
Confidence 578999977665557788899999999988765554 58889999999988887777 999988886 7789999
Q ss_pred hhh--ccCCcEEEecCC
Q 028883 131 AAA--NSQILVIRVPLL 145 (202)
Q Consensus 131 vA~--~T~~PVIgVP~~ 145 (202)
+|+ ....|.|.||+.
T Consensus 107 ~A~~~~rg~p~i~VPTT 123 (354)
T cd08199 107 AASLYRRGTPYVRIPTT 123 (354)
T ss_pred HHHHhcCCCCEEEEcCc
Confidence 994 678999999995
No 23
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=96.77 E-value=0.0088 Score=54.30 Aligned_cols=87 Identities=13% Similarity=0.142 Sum_probs=66.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhc--
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAAN-- 134 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~-- 134 (202)
.++.||+++.+- ..++..+.|++.|+.+.+ .-...|-+.+.+.+.++.+++.++++||++-|++. -++.++|..
T Consensus 24 ~~~livtd~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~~D~aK~ia~~~~ 101 (367)
T cd08182 24 KRVLLVTGPRSA--IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGGSVLDTAKALAALLG 101 (367)
T ss_pred CeEEEEeCchHH--HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCcHHHHHHHHHHHHHh
Confidence 479999987774 667888899999976543 23456888899999999998889999999999854 344455543
Q ss_pred --------------------cCCcEEEecCCCC
Q 028883 135 --------------------SQILVIRVPLLSE 147 (202)
Q Consensus 135 --------------------T~~PVIgVP~~~~ 147 (202)
..+|+|.||+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 134 (367)
T cd08182 102 APREALEDLRIRNKERENRERALPLIAIPTTAG 134 (367)
T ss_pred CCCcHHHHHHHhccCCCCCCCCCCEEEeCCCCC
Confidence 3589999999753
No 24
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=96.74 E-value=0.012 Score=53.96 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=70.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCce---EEEEecCC-cCchhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSGVA 131 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~~---ViIa~AG~-aa~Lpgvv 131 (202)
.+|.||+++.......++..+.|++.|+++++.+.. .+.+.+.+.+..+.+.+.+++ +||++.|+ ..-+++++
T Consensus 24 ~rvlvVtd~~v~~~~~~~l~~~L~~~g~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~ 103 (355)
T cd08197 24 DKYLLVTDSNVEDLYGHRLLEYLREAGAPVELLSVPSGEEHKTLSTLSDLVERALALGATRRSVIVALGGGVVGNIAGLL 103 (355)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHH
Confidence 478899987655557888999999999988776654 467778899998888888887 99988887 56788888
Q ss_pred hhc--cCCcEEEecCC
Q 028883 132 AAN--SQILVIRVPLL 145 (202)
Q Consensus 132 A~~--T~~PVIgVP~~ 145 (202)
|+. ...|+|.||+.
T Consensus 104 A~~~~rgip~I~IPTT 119 (355)
T cd08197 104 AALLFRGIRLVHIPTT 119 (355)
T ss_pred HHHhccCCCEEEecCc
Confidence 864 57899999995
No 25
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=96.65 E-value=0.018 Score=51.63 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=58.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEEecCC-cCchhhhhhhccC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGV-EAHLSGVAAANSQ 136 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~-aa~LpgvvA~~T~ 136 (202)
.++.||++... .++..+.|++.++ .++.+.. ..+-..+.+..+.++.. +.++||++.|+ ..-+++++|.+..
T Consensus 26 ~r~livtd~~~----~~~~~~~L~~~~~-~~~~~~~-~~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~~~~ 99 (331)
T cd08174 26 GRVAVVSGPGV----GEQVAESLKTSFS-AEVEAVE-EVSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAFLRG 99 (331)
T ss_pred CceEEEECCcH----HHHHHHHHHhccC-ceEEEec-CCCccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHhhcC
Confidence 47999998776 7788888888777 3333332 23334444444444333 47999988887 6678999999999
Q ss_pred CcEEEecCCCC
Q 028883 137 ILVIRVPLLSE 147 (202)
Q Consensus 137 ~PVIgVP~~~~ 147 (202)
+|+|.||+..+
T Consensus 100 ~p~i~vPTt~~ 110 (331)
T cd08174 100 IPLSVPTTNLN 110 (331)
T ss_pred CCEEEecCccc
Confidence 99999999753
No 26
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=96.64 E-value=0.0049 Score=56.21 Aligned_cols=89 Identities=12% Similarity=0.135 Sum_probs=68.7
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc-
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN- 134 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~- 134 (202)
.+|.||+|..- +....++....|++-|+.+.+ .-.-.|-+.+.+.+.++.+++.++++||++-|++.. .+..+|..
T Consensus 27 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK~ia~~~ 106 (376)
T cd08193 27 KRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGGSSMDVAKLVAVLA 106 (376)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 47888888642 455788999999999987653 223478889999999999988889999999999764 44465553
Q ss_pred -----------------cCCcEEEecCCCC
Q 028883 135 -----------------SQILVIRVPLLSE 147 (202)
Q Consensus 135 -----------------T~~PVIgVP~~~~ 147 (202)
..+|+|.||+..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~p~i~IPTTag 136 (376)
T cd08193 107 GSDQPLADMYGVDLVAGPRLPLILVPTTAG 136 (376)
T ss_pred HCCCCHHHHhCCCccCCCCCCEEEeCCCCc
Confidence 3689999999753
No 27
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=96.63 E-value=0.012 Score=53.77 Aligned_cols=88 Identities=17% Similarity=0.146 Sum_probs=68.1
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh--
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-- 133 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~-- 133 (202)
.++.||+|..+- ....++..+.|++.|+.+.+- -...|-+.+.+.+.++.++..++++||++-|++.. .+-++|.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~AKaia~~~ 103 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGGSPIDTAKAIAVLA 103 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 479999987654 347889999999999976542 35678888889999999988899999999998654 3334442
Q ss_pred ----------------ccCCcEEEecCCC
Q 028883 134 ----------------NSQILVIRVPLLS 146 (202)
Q Consensus 134 ----------------~T~~PVIgVP~~~ 146 (202)
...+|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta 132 (375)
T cd08194 104 TNGGSIRDYKGPRIVDKPGLPLIAIPTTA 132 (375)
T ss_pred hCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 2468999999964
No 28
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=96.53 E-value=0.01 Score=54.37 Aligned_cols=88 Identities=16% Similarity=0.183 Sum_probs=66.2
Q ss_pred CeEEEEecCCC-C-HHHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc
Q 028883 59 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN 134 (202)
Q Consensus 59 ~~V~IimGS~S-D-~~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~ 134 (202)
.++.||++..+ + ....++..+.|++.|+.+.+.- ...+.+.+.+.+.++.+++.++++||++.|++.. .+..+|..
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 106 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPIDSAKSAAIL 106 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHHHHHHHHHHH
Confidence 47999998664 3 5567899999999999765432 3466788999999999988899999999998643 34344432
Q ss_pred -------------------cCCcEEEecCCC
Q 028883 135 -------------------SQILVIRVPLLS 146 (202)
Q Consensus 135 -------------------T~~PVIgVP~~~ 146 (202)
..+|+|.||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 137 (383)
T cd08186 107 LEHPGKTARDLYEFKFTPEKALPLIAINLTH 137 (383)
T ss_pred HhCCCCcHHHHhCCCcccCCCCCEEEEeCCC
Confidence 257999999964
No 29
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=96.53 E-value=0.012 Score=53.87 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=66.0
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch-hhhhh---
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL-SGVAA--- 132 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L-pgvvA--- 132 (202)
.++.||+|..... ...+++.+.|++.|+.+.+- =+..|-+-+.+++.++.+++.++++||++.|++..= +=.+|
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGS~iD~aK~ia~~~ 108 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGGSPHDCAKAIGIVA 108 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHH
Confidence 3788998876554 68889999999999976542 134588888999999999888999999999987621 11111
Q ss_pred ---------------hccCCcEEEecCCC
Q 028883 133 ---------------ANSQILVIRVPLLS 146 (202)
Q Consensus 133 ---------------~~T~~PVIgVP~~~ 146 (202)
-...+|+|.||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~P~i~IPTta 137 (377)
T cd08176 109 TNGGDIRDYEGVAKSKKPAVPIVAINTTA 137 (377)
T ss_pred hCCCCHHHHhCcCccCCCCCCEEEeCCCC
Confidence 12568999999964
No 30
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=96.51 E-value=0.014 Score=53.39 Aligned_cols=88 Identities=16% Similarity=0.074 Sum_probs=66.2
Q ss_pred CeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhhc
Q 028883 59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAAN 134 (202)
Q Consensus 59 ~~V~IimGS~SD--~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~~ 134 (202)
.++.||+|..+- ....++..+.|++.|+.+.+ .-..+|-+.+.+.+.++.++..++++||++.|++..=.+ .++..
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~ 108 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEEKVDFILAVGGGSVIDSAKAIAAG 108 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhH
Confidence 479999986554 35678899999999986543 223467778899999988888899999999998764333 44442
Q ss_pred ------------------cCCcEEEecCCC
Q 028883 135 ------------------SQILVIRVPLLS 146 (202)
Q Consensus 135 ------------------T~~PVIgVP~~~ 146 (202)
..+|+|.||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~P~iaIPTTa 138 (382)
T cd08187 109 APYDGDVWDFFTGKAKIEKALPVGTVLTLA 138 (382)
T ss_pred hhCCCCHHHHhcccCCCCCCCCEEEEeCCC
Confidence 368999999964
No 31
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=96.40 E-value=0.015 Score=53.03 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=65.3
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhcc
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANS 135 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~T 135 (202)
.+|.|++|.... ....++..+.|++.|+.+.+. -.-.|-+.+.+.+.++.+.+.++++||++.|++.. .+-.+|...
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGS~~D~aK~ia~~~ 106 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGGSVIDCAKAIAARA 106 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHH
Confidence 479999987643 236788999999999976532 23467888889999999988899999999998653 333444332
Q ss_pred -------------------CCcEEEecCCC
Q 028883 136 -------------------QILVIRVPLLS 146 (202)
Q Consensus 136 -------------------~~PVIgVP~~~ 146 (202)
.+|+|.||+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~p~i~VPTta 136 (374)
T cd08189 107 ANPKKSLRKLTGLLKVKKPLPPLFAIPTTA 136 (374)
T ss_pred hCCCCCHHHHhCccccCCCCCCEEEEECCC
Confidence 27999999974
No 32
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=96.38 E-value=0.017 Score=52.56 Aligned_cols=88 Identities=16% Similarity=0.186 Sum_probs=67.5
Q ss_pred CeEEEEecCCC-C-HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhh-
Q 028883 59 PIVGIIMESDL-D-LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA- 133 (202)
Q Consensus 59 ~~V~IimGS~S-D-~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~- 133 (202)
.++.||+|..+ . ....++..+.|++.|+.+.+. -...+-+-+.+.+.++.+++.++++||++.|++..=.+ .+|.
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~aK~ia~~ 105 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLDAAKAIAVL 105 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHH
Confidence 47999998776 3 446788999999999976542 24468888899999999999999999999999764332 4432
Q ss_pred ----------------ccCCcEEEecCCC
Q 028883 134 ----------------NSQILVIRVPLLS 146 (202)
Q Consensus 134 ----------------~T~~PVIgVP~~~ 146 (202)
...+|+|.||+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~P~i~VPTta 134 (357)
T cd08181 106 IKNPDLKVELYFRSKYLKALPVVAIPTTA 134 (357)
T ss_pred HhCCCcHHHHhcccccCCCCCEEEEeCCC
Confidence 2368999999975
No 33
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=96.34 E-value=0.019 Score=52.66 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=65.9
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh--
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-- 133 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~-- 133 (202)
.+|.||+|..... ...++..+.|++.|+.+++. =...+.+.+.+.+.++.+.+.++++||++.|++.. .+=.+|.
T Consensus 30 ~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGGSviD~aKaia~~~ 109 (379)
T TIGR02638 30 KKALVVTDKDLIKFGVADKVTDLLDEAGIAYELFDEVKPNPTITVVKAGVAAFKASGADYLIAIGGGSPIDTAKAIGIIS 109 (379)
T ss_pred CEEEEEcCcchhhccchHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence 4789999865433 37889999999999976542 13467888999999999988899999999998754 2212221
Q ss_pred ------------------ccCCcEEEecCCCC
Q 028883 134 ------------------NSQILVIRVPLLSE 147 (202)
Q Consensus 134 ------------------~T~~PVIgVP~~~~ 147 (202)
...+|+|.||+..+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~P~i~IPTTag 141 (379)
T TIGR02638 110 NNPEFADVRSLEGVAPTKKPGVPIIAIPTTAG 141 (379)
T ss_pred hCCCCCCHHHhhCCCccCCCCCCEEEECCCCc
Confidence 13479999999753
No 34
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=96.32 E-value=0.017 Score=52.49 Aligned_cols=89 Identities=18% Similarity=0.162 Sum_probs=66.5
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc-
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN- 134 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~- 134 (202)
.++.||+|... +....++..+.|++-|+++.+- -...|-+-+.+.+.++.+++.++++||++-|++.. ++..+|..
T Consensus 25 ~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGSviD~aK~ia~~~ 104 (370)
T cd08192 25 KRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGGSALDLAKAVALMA 104 (370)
T ss_pred CeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 37888887544 3447899999999999976542 24578888889999999988889999999998643 33344443
Q ss_pred ---------------------cCCcEEEecCCCC
Q 028883 135 ---------------------SQILVIRVPLLSE 147 (202)
Q Consensus 135 ---------------------T~~PVIgVP~~~~ 147 (202)
..+|+|.||+..+
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTtag 138 (370)
T cd08192 105 GHPGPLWDYEDIEGGWPRITDAIPPLIAIPTTAG 138 (370)
T ss_pred hCCCCHHHHhcccccccccCCCCCCEEEecCCCc
Confidence 2489999999753
No 35
>PLN02834 3-dehydroquinate synthase
Probab=96.29 E-value=0.032 Score=52.77 Aligned_cols=87 Identities=16% Similarity=0.226 Sum_probs=69.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE--EEEc---cCCCchHHHHHHHHHhhcCce---EEEEecCC-cCchhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILP---PHQNCKEALSYALSAKERGIK---IIIVGDGV-EAHLSG 129 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev--~V~S---aHRtp~~l~~~~~~~~~~g~~---ViIa~AG~-aa~Lpg 129 (202)
.+|.||++....--+.++..+.|+.-|+++++ .+.. .+++.+.+.+.++.+.+.+++ +||++.|+ ..-+++
T Consensus 101 ~rvlIVtD~~v~~~~~~~v~~~L~~~g~~~~v~~~v~~~gE~~ksl~~v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak 180 (433)
T PLN02834 101 KRVLVVTNETVAPLYLEKVVEALTAKGPELTVESVILPDGEKYKDMETLMKVFDKALESRLDRRCTFVALGGGVIGDMCG 180 (433)
T ss_pred CEEEEEECccHHHHHHHHHHHHHHhcCCceEEEEEEecCCcCCCCHHHHHHHHHHHHhcCCCcCcEEEEECChHHHHHHH
Confidence 57999998876666888999999999987665 3433 467888888888888877776 99999887 667888
Q ss_pred hhhh--ccCCcEEEecCC
Q 028883 130 VAAA--NSQILVIRVPLL 145 (202)
Q Consensus 130 vvA~--~T~~PVIgVP~~ 145 (202)
++|+ +-..|+|.||+.
T Consensus 181 ~~A~~y~rgiplI~VPTT 198 (433)
T PLN02834 181 FAAASYQRGVNFVQIPTT 198 (433)
T ss_pred HHHHHhcCCCCEEEECCc
Confidence 8875 457899999995
No 36
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=96.28 E-value=0.02 Score=52.83 Aligned_cols=74 Identities=14% Similarity=0.033 Sum_probs=55.5
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhh
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA 132 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA 132 (202)
.+|.||++... +....++..+.|++.|+.+.+. =...+-+.+.+.+.++.+.+.++++||++.|++.. ++..+|
T Consensus 22 ~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~AK~iA 98 (398)
T cd08178 22 KRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGGSPMDAAKIMW 98 (398)
T ss_pred CeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHH
Confidence 47889987543 4458889999999999876532 24467888899999999988899999999998643 333444
No 37
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=96.27 E-value=0.013 Score=52.97 Aligned_cols=88 Identities=16% Similarity=0.193 Sum_probs=66.3
Q ss_pred eEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhcc-
Q 028883 60 IVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAANS- 135 (202)
Q Consensus 60 ~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~T- 135 (202)
+|.||++..-.. +..++....|++-|+.+.+.- ...|=+.+.+.+.++.+++.++++||++-|++.- .+=+++...
T Consensus 23 r~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~va~~~~ 102 (366)
T PF00465_consen 23 RVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGGSVMDAAKAVALLLA 102 (366)
T ss_dssp EEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESHHHHHHHHHHHHHHT
T ss_pred CEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCCCcCcHHHHHHhhcc
Confidence 899999883222 268899999999999875533 6899999999999999999999999999999642 222222222
Q ss_pred ------------------CCcEEEecCCCC
Q 028883 136 ------------------QILVIRVPLLSE 147 (202)
Q Consensus 136 ------------------~~PVIgVP~~~~ 147 (202)
.+|+|.||+..+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 103 NPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp SSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred CCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 289999999754
No 38
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=96.18 E-value=0.013 Score=53.01 Aligned_cols=86 Identities=19% Similarity=0.024 Sum_probs=64.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc-CchhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a-a~LpgvvA~~T~~ 137 (202)
.++.||++..+=....++..+.|+..++.+.+ .... .+-+.+++.++.+.+.++++||++-|++ --++..+|....+
T Consensus 24 ~~~liv~d~~~~~~~~~~l~~~L~~~~~~~~~-~~~~-p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~ 101 (347)
T cd08172 24 KRPLIVTGPRSWAAAKPYLPESLAAGEAFVLR-YDGE-CSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGV 101 (347)
T ss_pred CeEEEEECHHHHHHHHHHHHHHHhcCeEEEEE-eCCC-CCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCC
Confidence 47899998766344555666666555664321 1123 7888899999999888999999998884 5688889888899
Q ss_pred cEEEecCCC
Q 028883 138 LVIRVPLLS 146 (202)
Q Consensus 138 PVIgVP~~~ 146 (202)
|+|.||+..
T Consensus 102 p~i~VPTT~ 110 (347)
T cd08172 102 PVITVPTLA 110 (347)
T ss_pred CEEEecCcc
Confidence 999999974
No 39
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=96.10 E-value=0.018 Score=51.89 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=66.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~ 137 (202)
.++.||+|...--...++..+.|++.++. .+.-...|-+.+.+.+.++.+.+.++++||++.|++. -++.++|....+
T Consensus 24 ~~~livt~~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~ia~~~~~ 102 (337)
T cd08177 24 SRALVLTTPSLATKLAERVASALGDRVAG-TFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGGSTIDLAKAIALRTGL 102 (337)
T ss_pred CeEEEEcChHHHHHHHHHHHHHhccCCcE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhcC
Confidence 37889998765444777888888876432 1222335777888888888888888999999998854 577788888899
Q ss_pred cEEEecCCC
Q 028883 138 LVIRVPLLS 146 (202)
Q Consensus 138 PVIgVP~~~ 146 (202)
|+|.||+..
T Consensus 103 p~i~IPTta 111 (337)
T cd08177 103 PIIAIPTTL 111 (337)
T ss_pred CEEEEcCCc
Confidence 999999964
No 40
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=96.06 E-value=0.034 Score=50.94 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=62.4
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh----hhhh
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA 132 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp----gvvA 132 (202)
.+|.||+|.... ....++..+.|++.|+.+.+.- ...+-+.+.+.+.++.+...++++||++.|++..=. ++++
T Consensus 29 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGGsviD~AK~ia~~~ 108 (377)
T cd08188 29 KKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVVFSDVSPNPRDEEVMAGAELYLENGCDVIIAVGGGSPIDCAKGIGIVA 108 (377)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 478999986543 3467889999999998765421 234566777888888888888999999999864322 2222
Q ss_pred hc---------------cCCcEEEecCCC
Q 028883 133 AN---------------SQILVIRVPLLS 146 (202)
Q Consensus 133 ~~---------------T~~PVIgVP~~~ 146 (202)
.+ ..+|+|.||+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~p~i~IPTT~ 137 (377)
T cd08188 109 SNGGHILDFEGVDKITRPLPPLICIPTTA 137 (377)
T ss_pred HCCCCHHHHhCcccccCCCCCEEEECCCC
Confidence 21 147999999975
No 41
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=96.05 E-value=0.025 Score=52.44 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=63.3
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh----hhh
Q 028883 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG----VAA 132 (202)
Q Consensus 59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg----vvA 132 (202)
.++.|+++.. ......++..+.|++-|+.+.+. -...+=+.+.+.+.++.+++.++++||++-|++.-=.+ ++.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~~~D~IiavGGGS~iD~AKaia~~~ 129 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRESGCDGVIAFGGGSVLDAAKAVALLV 129 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCcCEEEEeCChHHHHHHHHHHHHH
Confidence 3566666532 34566899999999999977643 33456666889999999988999999999999753222 221
Q ss_pred hc---------------cCCcEEEecCCCC
Q 028883 133 AN---------------SQILVIRVPLLSE 147 (202)
Q Consensus 133 ~~---------------T~~PVIgVP~~~~ 147 (202)
.+ ..+|+|.||+..+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~P~iaIPTtaG 159 (395)
T PRK15454 130 TNPDSTLAEMSETSVLQPRLPLIAIPTTAG 159 (395)
T ss_pred hCCCccHHHHhcccccCCCCCEEEECCCCc
Confidence 11 3579999999753
No 42
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=95.98 E-value=0.045 Score=50.00 Aligned_cols=88 Identities=15% Similarity=0.105 Sum_probs=65.3
Q ss_pred CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhh-
Q 028883 59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA- 133 (202)
Q Consensus 59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~- 133 (202)
.++.||+|..+ .....++..+.|++.|+++.+. =...|-+.+.+.+.++.+.+.++++||++-|++.-=.+ .+|.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD~AK~ia~~ 103 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPIDAAKAMWIF 103 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHH
Confidence 47899998654 3467789999999999976532 13468888999999999988899999999999653222 2221
Q ss_pred --------------------ccCCcEEEecCCC
Q 028883 134 --------------------NSQILVIRVPLLS 146 (202)
Q Consensus 134 --------------------~T~~PVIgVP~~~ 146 (202)
...+|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~p~iaIPTta 136 (375)
T cd08179 104 YEYPELTFEDIVKPFTLPELRNKARFCAIPSTS 136 (375)
T ss_pred HhCCCcCHHHHhccccccccCCCCCEEEeCCCC
Confidence 1247999999964
No 43
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=95.96 E-value=0.059 Score=49.12 Aligned_cols=85 Identities=20% Similarity=0.158 Sum_probs=66.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEc---cCCCchHHHHHHHHHhhcC---ceEEEEecCC-cCchhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILP---PHQNCKEALSYALSAKERG---IKIIIVGDGV-EAHLSGV 130 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~-~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g---~~ViIa~AG~-aa~Lpgv 130 (202)
.++.||++..-.-...++..+.|+. .++.+ .+.+ .+++.+.+.+..+.+.+.+ .++||++.|+ ..-++++
T Consensus 24 ~k~livtd~~v~~~~~~~v~~~L~~~~~~~~--~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~ 101 (344)
T cd08169 24 DQYFFISDSGVADLIAHYIAEYLSKILPVHI--LVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGGATGDVAGF 101 (344)
T ss_pred CeEEEEECccHHHHHHHHHHHHHHhhcCceE--EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHH
Confidence 4789999887766788999999987 66643 4444 4778888888887777555 7899998887 5568999
Q ss_pred hhh--ccCCcEEEecCC
Q 028883 131 AAA--NSQILVIRVPLL 145 (202)
Q Consensus 131 vA~--~T~~PVIgVP~~ 145 (202)
+|+ +-..|.|.||+.
T Consensus 102 vA~~~~rgip~i~VPTT 118 (344)
T cd08169 102 VASTLFRGIAFIRVPTT 118 (344)
T ss_pred HHHHhccCCcEEEecCC
Confidence 987 458899999995
No 44
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=95.93 E-value=0.047 Score=50.18 Aligned_cols=86 Identities=22% Similarity=0.245 Sum_probs=62.1
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA 133 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~ 133 (202)
.+|.||++...- ....++..+.|++-|+.+++ .+- +-+.+.+.+.++.+.+.++++||++.|++.. .+-.+|.
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~--f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~ 100 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEV--FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGGSCIDLAKIAGL 100 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEE--ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHH
Confidence 478999986654 47888999999999987653 332 3345556667777777789999999998653 3335544
Q ss_pred cc------------------CCcEEEecCCC
Q 028883 134 NS------------------QILVIRVPLLS 146 (202)
Q Consensus 134 ~T------------------~~PVIgVP~~~ 146 (202)
.. .+|+|.||+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~p~i~IPTta 131 (386)
T cd08191 101 LLAHGGDVRDYYGEFKVPGPVLPLIAVPTTA 131 (386)
T ss_pred HHhCCCCHHHHhCccccCCCCCCEEEEeCCC
Confidence 33 68999999974
No 45
>PRK10586 putative oxidoreductase; Provisional
Probab=95.81 E-value=0.054 Score=49.83 Aligned_cols=86 Identities=9% Similarity=0.016 Sum_probs=64.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~~T~~ 137 (202)
.++.||+|..+=........+.|++-|+.+ .+.+-+-+.+.+.++.+..+ .++++||++-|++..=.+ .+|....+
T Consensus 35 ~~~lvv~g~~~~~~~~~~~~~~l~~~~~~~--~~~~g~~~~~~v~~l~~~~~-~~~d~iiavGGGs~iD~aK~~a~~~~~ 111 (362)
T PRK10586 35 SRAVWIYGERAIAAAQPYLPPAFELPGAKH--ILFRGHCSESDVAQLAAASG-DDRQVVIGVGGGALLDTAKALARRLGL 111 (362)
T ss_pred CeEEEEEChHHHHHHHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHHhc-cCCCEEEEecCcHHHHHHHHHHhhcCC
Confidence 368899998876666677788899888754 34555566777887776654 468999999998664333 66777889
Q ss_pred cEEEecCCCC
Q 028883 138 LVIRVPLLSE 147 (202)
Q Consensus 138 PVIgVP~~~~ 147 (202)
|+|.||+..+
T Consensus 112 p~i~vPT~a~ 121 (362)
T PRK10586 112 PFVAIPTIAA 121 (362)
T ss_pred CEEEEeCCcc
Confidence 9999999753
No 46
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=95.80 E-value=0.052 Score=49.81 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=64.4
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhh---
Q 028883 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAA--- 132 (202)
Q Consensus 59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA--- 132 (202)
.+|.||++.. .+.+..++..+.|++.|+.+.+. =...+.+.+.+.+.++.+.+.++++||++-|++..=.+ .+|
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~iD~aK~ia~~~ 110 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKASGADYLIAIGGGSPQDTCKAIGIIS 110 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCChHHHHHHHHHHHHH
Confidence 3788888764 34458899999999999976542 12356677888888888888899999999998653222 222
Q ss_pred h-----------------ccCCcEEEecCCCC
Q 028883 133 A-----------------NSQILVIRVPLLSE 147 (202)
Q Consensus 133 ~-----------------~T~~PVIgVP~~~~ 147 (202)
. ...+|+|.||+..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~p~i~VPTTag 142 (382)
T PRK10624 111 NNPEFADVRSLEGVAPTKKPSVPIIAIPTTAG 142 (382)
T ss_pred HCCCCCCHHHHhCcCcccCCCCCEEEECCCCc
Confidence 1 12479999999753
No 47
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=95.79 E-value=0.041 Score=50.74 Aligned_cols=88 Identities=16% Similarity=0.115 Sum_probs=64.9
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhhh--
Q 028883 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAAA-- 133 (202)
Q Consensus 59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA~-- 133 (202)
.+|.|++|.. ......++..+.|++.|+.+.+ .=+..+=+-+.+++.++.+++.++++||++-|++.-=.+ +++.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ia~~~ 111 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKENNCDSVISLGGGSPHDCAKGIALVA 111 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHH
Confidence 4788898864 3466888999999999997532 223347777889999999988899999999998753222 2221
Q ss_pred ----------------ccCCcEEEecCCC
Q 028883 134 ----------------NSQILVIRVPLLS 146 (202)
Q Consensus 134 ----------------~T~~PVIgVP~~~ 146 (202)
...+|+|.||+..
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~p~iaIPTTa 140 (383)
T PRK09860 112 ANGGDIRDYEGVDRSAKPQLPMIAINTTA 140 (383)
T ss_pred HCCCCHHHHhCcCccCCCCCCEEEEeCCC
Confidence 2468999999865
No 48
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=95.73 E-value=0.054 Score=48.66 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=61.2
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhhc-
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAAN- 134 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~~- 134 (202)
.++.||++.... ....++..+.|++- +.+.+ .-...+.+.+.+.+.++.+.+.++++||++.|++.. .+..++..
T Consensus 23 ~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~aKa~a~~~ 101 (332)
T cd08180 23 KRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGGSAIDAAKAIIYFA 101 (332)
T ss_pred CeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCchHHHHHHHHHHHH
Confidence 478888876433 23667777788765 55432 223467788888899988888889999999998765 44344332
Q ss_pred ------cCCcEEEecCCC
Q 028883 135 ------SQILVIRVPLLS 146 (202)
Q Consensus 135 ------T~~PVIgVP~~~ 146 (202)
..+|+|.||+..
T Consensus 102 ~~~~~~~~~p~i~VPTta 119 (332)
T cd08180 102 KKLGKKKKPLFIAIPTTS 119 (332)
T ss_pred hCCCCCCCCCEEEeCCCC
Confidence 247999999964
No 49
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=95.56 E-value=0.075 Score=49.48 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=53.8
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~ 126 (202)
.+|.||++... .....++..+.|++.|+.+.+. -+..+-+.+.+.+.++.+.+.++++||++-|++..
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEVYDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGGSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 47888887653 3346788999999999987642 34468888899999999988899999999999754
No 50
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=95.31 E-value=0.13 Score=47.87 Aligned_cols=87 Identities=15% Similarity=0.190 Sum_probs=61.5
Q ss_pred CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEE--E---E---ccCCCchHHHHHHHHHhhcCce---EEEEecCC-
Q 028883 59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIK--I---L---PPHQNCKEALSYALSAKERGIK---IIIVGDGV- 123 (202)
Q Consensus 59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~--V---~---SaHRtp~~l~~~~~~~~~~g~~---ViIa~AG~- 123 (202)
.++.||+.+.-. .+..++..+.|++-|+++++. + - ..+-+++.+.++.+.+.+.+++ +||++.|+
T Consensus 43 ~r~liVtD~~v~~~~~~l~~~v~~~L~~~g~~~~~~~~~~~~~~ge~~k~~~~~v~~i~~~~~~~~~dr~d~IIaiGGGs 122 (389)
T PRK06203 43 KKVLVVIDSGVLRAHPDLLEQITAYFAAHADVLELVAEPLVVPGGEAAKNDPALVEALHAAINRHGIDRHSYVLAIGGGA 122 (389)
T ss_pred CeEEEEECchHHHhhhhHHHHHHHHHHhcCCceeeeeeEEEccCCccCCCcHHHHHHHHHHHHHcCCCCCceEEEeCCcH
Confidence 578999865443 245678888888888876432 2 1 2333346677777777776665 99999888
Q ss_pred cCchhhhhhhc--cCCcEEEecCC
Q 028883 124 EAHLSGVAAAN--SQILVIRVPLL 145 (202)
Q Consensus 124 aa~LpgvvA~~--T~~PVIgVP~~ 145 (202)
..-+++.+|+. -..|.|.||+.
T Consensus 123 v~D~ak~iA~~~~rgip~I~IPTT 146 (389)
T PRK06203 123 VLDMVGYAAATAHRGVRLIRIPTT 146 (389)
T ss_pred HHHHHHHHHHHhcCCCCEEEEcCC
Confidence 56788888863 35899999996
No 51
>KOG2835 consensus Phosphoribosylamidoimidazole-succinocarboxamide synthase [Nucleotide transport and metabolism]
Probab=95.19 E-value=0.02 Score=53.71 Aligned_cols=103 Identities=16% Similarity=0.032 Sum_probs=77.9
Q ss_pred CCCCCceeeeeecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHH
Q 028883 4 NSKRPNSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSD 83 (202)
Q Consensus 4 ~~~~~~~~~~~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~ 83 (202)
+.+|.|.++++|+|.-.++-...--..+|..|.+ +.+. ...-|..
T Consensus 219 ~d~~im~D~~~~~d~~~vt~e~~ilv~~~~t~~m---------sr~a------------~~a~~~~-------------- 263 (373)
T KOG2835|consen 219 GDGRIMKDKKVYFDLDEVTNEGLILVDENTTPVM---------SRYA------------TSAKSRG-------------- 263 (373)
T ss_pred CCcceeeeeeEEeccccCCccceEEEeecCchhH---------hhhh------------hhcccCc--------------
Confidence 4578889999998887777655555666666665 3321 1111111
Q ss_pred hCCCeEEEEEccCCCchHHHHHHHHHhhcCc-eEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883 84 FGVPYEIKILPPHQNCKEALSYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 84 ~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~-~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
+.+.|+|+|..++.-..+.++++..|. .++++++|+++.|+-|.++++ .||=-++++.
T Consensus 264 ----~~~~iaga~~~~~~p~~v~a~f~~~gvp~~~~~~dg~~~~l~~V~~~~~-~~~~~v~v~~ 322 (373)
T KOG2835|consen 264 ----VVLWIAGAYKAGHEPLMVDAEFERPGVPVVFVAVDGRDNLLSIVQMPNG-VPVATVAVNN 322 (373)
T ss_pred ----eEEEEeccCCCCCChhhHHhhccccCcceeeeecccccccccceeccCC-ccccccccCC
Confidence 799999999999999999999999898 599999999999999999999 5555555543
No 52
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=95.18 E-value=0.042 Score=48.64 Aligned_cols=136 Identities=15% Similarity=0.136 Sum_probs=84.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ 136 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~ 136 (202)
.++.||++...--...++..+.|+..|+++.+-. ...+=+-+.+.++.+.+...+.++||++-|+ ..-+.=++|....
T Consensus 20 ~~~lvv~d~~t~~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG~i~D~~K~~A~~~~ 99 (250)
T PF13685_consen 20 KKVLVVTDENTYKAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGGTIIDIAKYAAFELG 99 (250)
T ss_dssp SEEEEEEETTHHHHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESHHHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCcHHHHHHHHHHHhcC
Confidence 4899999999877778899999999999876322 1222355567777777766678888887776 6779999999999
Q ss_pred CcEEEecCCCCCCChhh-HHHhhcC---------CCCCeeeEEecC-----------ChhhHHHHHHHHHccCCHHHHHH
Q 028883 137 ILVIRVPLLSEDWSEDD-VINSIRM---------PSHVQVASVPRN-----------NAKNAALYAVKVLGIADEDLLER 195 (202)
Q Consensus 137 ~PVIgVP~~~~~l~G~D-LlS~vqM---------P~GvpVatV~I~-----------n~~NAAl~Aa~IL~~~d~~l~~k 195 (202)
+|.|.||+..+ .+|+. =.+.+.. |.-.|.+++ +| ..-+.+=+..++-++.||.|..+
T Consensus 100 ~p~isVPTa~S-~DG~aS~~Asl~~~~g~k~s~~~a~~P~aIi-aD~dIi~~AP~~l~~aG~GDli~k~tA~~DW~La~~ 177 (250)
T PF13685_consen 100 IPFISVPTAAS-HDGFASPVASLTVDDGFKVSYGPAKAPIAII-ADTDIIANAPRRLIAAGFGDLISKYTALADWKLAHE 177 (250)
T ss_dssp --EEEEES--S-SGGGTSSEEEEEET-TEEEEE-E----SEEE-EEHHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeccccc-cccccCCCeeEEecCCCceeecCCCCCeEEE-EeHHHHHhCCHHHHHhhHHHHHHhhhhHHHHHHHHH
Confidence 99999999864 56653 2222211 344455555 23 23455556778888888877665
Q ss_pred H
Q 028883 196 I 196 (202)
Q Consensus 196 l 196 (202)
+
T Consensus 178 ~ 178 (250)
T PF13685_consen 178 Y 178 (250)
T ss_dssp T
T ss_pred h
Confidence 4
No 53
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.06 E-value=0.24 Score=47.92 Aligned_cols=85 Identities=18% Similarity=0.126 Sum_probs=61.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHHhhc---CceEEEEecCC-cCchhhhhh
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSAKER---GIKIIIVGDGV-EAHLSGVAA 132 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~~~~---g~~ViIa~AG~-aa~LpgvvA 132 (202)
++.||+..... ...++..+.|+..|+.+...+... +++.+.+.+..+.+.+. ..++||++.|+ ..-+++++|
T Consensus 211 k~~iV~d~~v~-~~~~~l~~~L~~~g~~v~~~v~p~~E~~ksl~~v~~~~~~l~~~~~~r~D~IIAIGGGsv~D~AKfvA 289 (542)
T PRK14021 211 KVALIHTQPVQ-RHSDRARTLLRQGGYEVSDIVIPDAEAGKTIEVANGIWQRLGNEGFTRSDAIVGLGGGAATDLAGFVA 289 (542)
T ss_pred eEEEEECccHH-HHHHHHHHHHHhCCCceEEEEeCCCcccCCHHHHHHHHHHHHhcCCCCCcEEEEEcChHHHHHHHHHH
Confidence 56777755543 467888889999888755445443 34566666666555554 47899988886 677999999
Q ss_pred h--ccCCcEEEecCC
Q 028883 133 A--NSQILVIRVPLL 145 (202)
Q Consensus 133 ~--~T~~PVIgVP~~ 145 (202)
+ +-..|+|.||+.
T Consensus 290 ~~y~rGi~~i~vPTT 304 (542)
T PRK14021 290 ATWMRGIRYVNCPTS 304 (542)
T ss_pred HHHHcCCCEEEeCCh
Confidence 7 689999999994
No 54
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=94.98 E-value=0.2 Score=46.64 Aligned_cols=87 Identities=20% Similarity=0.266 Sum_probs=62.8
Q ss_pred CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEE--EE--Ec---cCCC-chHHHHHHHHHhhcCce---EEEEecCC-
Q 028883 59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEI--KI--LP---PHQN-CKEALSYALSAKERGIK---IIIVGDGV- 123 (202)
Q Consensus 59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev--~V--~S---aHRt-p~~l~~~~~~~~~~g~~---ViIa~AG~- 123 (202)
.++.||+...-.- +..++....|+.-|+++++ .+ .. .+++ ++.+.++.+.+.+.+++ +||++.|+
T Consensus 31 ~r~lvVtD~~v~~~~~~~~~~l~~~L~~~g~~~~v~~~~~~~~~ge~~k~~~~~v~~i~~~l~~~~~~r~~~IIalGGG~ 110 (369)
T cd08198 31 PKVLVVIDSGVAQANPQLASDIQAYAAAHADALRLVAPPHIVPGGEACKNDPDLVEALHAAINRHGIDRHSYVIAIGGGA 110 (369)
T ss_pred CeEEEEECcchHHhhhhHHHHHHHHHHhcCCceeeeeeeEecCCCccCCChHHHHHHHHHHHHHcCCCcCcEEEEECChH
Confidence 5788998876554 4457777788877876552 22 11 3455 36677788877777776 99999888
Q ss_pred cCchhhhhhh--ccCCcEEEecCC
Q 028883 124 EAHLSGVAAA--NSQILVIRVPLL 145 (202)
Q Consensus 124 aa~LpgvvA~--~T~~PVIgVP~~ 145 (202)
..-++|++|+ +--.|.|.||+.
T Consensus 111 v~D~ag~vA~~~~rGip~I~IPTT 134 (369)
T cd08198 111 VLDAVGYAAATAHRGVRLIRIPTT 134 (369)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC
Confidence 5679999997 446899999997
No 55
>PRK15138 aldehyde reductase; Provisional
Probab=94.88 E-value=0.11 Score=47.98 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=48.1
Q ss_pred CeEEEEecCCCC--HHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883 59 PIVGIIMESDLD--LPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (202)
Q Consensus 59 ~~V~IimGS~SD--~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~ 126 (202)
.++.||+|+.|- ....++..+.|+ |+.+.+. -...|-+.+.+++.++.+++.++++||++-|++.-
T Consensus 30 ~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 98 (387)
T PRK15138 30 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPTYETLMKAVKLVREEKITFLLAVGGGSVL 98 (387)
T ss_pred CeEEEECCCchHHhcCcHHHHHHHhc--CCeEEEECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCChHHH
Confidence 479999986552 345677777775 6544332 23467777899999999988899999999998653
No 56
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=94.84 E-value=0.28 Score=45.09 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=63.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVA 131 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~Lpgvv 131 (202)
.++.||+...-.-.+.+...+.|+ ++ ++.+.+ .+++.+.+.+..+.+.+.++ ++||++.|+ ..-+++++
T Consensus 20 ~r~lIVtD~~v~~l~~~~l~~~L~--~~--~~~~~~~~e~~k~l~~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~v 95 (346)
T cd08196 20 ENDVFIVDANVAELYRDRLDLPLD--AA--PVIAIDATEENKSLEAVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFV 95 (346)
T ss_pred CeEEEEECccHHHHHHHHHHHHhc--CC--eEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHH
Confidence 468888877654446666666665 44 344444 59999999999999988888 799999888 56799999
Q ss_pred hh--ccCCcEEEecCC
Q 028883 132 AA--NSQILVIRVPLL 145 (202)
Q Consensus 132 A~--~T~~PVIgVP~~ 145 (202)
|+ +-..|.|.+|+.
T Consensus 96 A~~~~rgi~~i~iPTT 111 (346)
T cd08196 96 ASIYMRGVSWSFVPTT 111 (346)
T ss_pred HHHHHcCCCeEEeccc
Confidence 95 557899999984
No 57
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=94.80 E-value=0.66 Score=45.34 Aligned_cols=129 Identities=15% Similarity=0.152 Sum_probs=89.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQ 136 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~-~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~ 136 (202)
.|.|..+ |.|. ..+-+..++.+|+-..++++. ....+...+++ +.++..+++|||+-.|.++ ++-..++
T Consensus 14 ~p~~~~~--~~~~--l~~~~~~i~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~dviIsrG~ta~----~i~~~~~ 83 (538)
T PRK15424 14 KPVIWTV--SVSR--LFELFRDISLEFDHLANITPI--QLGFEKAVTYIRKRLATERCDAIIAAGSNGA----YLKSRLS 83 (538)
T ss_pred CCeEEEe--eHHH--HHHHHHHHHHhcCCCceEEeh--hhhHHHHHHHHHHHHhhCCCcEEEECchHHH----HHHhhCC
Confidence 4555544 4444 567788888899876666544 46677777777 5566778999999655554 5566789
Q ss_pred CcEEEecCCCCCCChhhHHHhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 028883 137 ILVIRVPLLSEDWSEDDVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE 201 (202)
Q Consensus 137 ~PVIgVP~~~~~l~G~DLlS~vqMP~Gv--pVatV~I~n~~NAAl~Aa~IL~~~--------d~~l~~kl~~~~~ 201 (202)
+|||-++++ |.|++..+.-.... .+++|+-.+-...+-.-.++|++. .++++..+++.++
T Consensus 84 iPVv~i~~s-----~~Dil~al~~a~~~~~~iavv~~~~~~~~~~~~~~~l~~~i~~~~~~~~~e~~~~v~~lk~ 153 (538)
T PRK15424 84 VPVILIKPS-----GFDVMQALARARKLTSSIGVVTYQETIPALVAFQKTFNLRIEQRSYVTEEDARGQINELKA 153 (538)
T ss_pred CCEEEecCC-----HhHHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 999998865 56744444332332 378898888888888888888863 3467777776654
No 58
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=94.51 E-value=0.14 Score=47.88 Aligned_cols=99 Identities=17% Similarity=0.135 Sum_probs=78.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQI 137 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~ 137 (202)
.++.|++|-..---..++..+.|+..|+ ...-+..-+=+-++++++.+.+...+.+++|++.|+.. -.+=++|-...+
T Consensus 31 ~~~lvv~g~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~a~~~ev~~~~~~~~~~~~d~vIGVGGGk~iD~aK~~A~~~~~ 109 (360)
T COG0371 31 SRALVVTGENTYAIAGEKVEKSLKDEGL-VVHVVFVGEASEEEVERLAAEAGEDGADVVIGVGGGKTIDTAKAAAYRLGL 109 (360)
T ss_pred CceEEEEChhHHHHHHHHHHHHhcccCc-ceeeeecCccCHHHHHHHHHHhcccCCCEEEEecCcHHHHHHHHHHHHcCC
Confidence 5799999999988888899999999998 45556667778899999988877667899999988854 477788889999
Q ss_pred cEEEecCCCCCCChhh--HHHhhc
Q 028883 138 LVIRVPLLSEDWSEDD--VINSIR 159 (202)
Q Consensus 138 PVIgVP~~~~~l~G~D--LlS~vq 159 (202)
|+|.||+..+ -+|.. .+|...
T Consensus 110 pfIsvPT~AS-~Da~~Sp~aSv~~ 132 (360)
T COG0371 110 PFISVPTIAS-TDAITSPVASVIY 132 (360)
T ss_pred CEEEecCccc-cccccCCceeeEE
Confidence 9999999875 34433 344444
No 59
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=93.83 E-value=0.37 Score=48.98 Aligned_cols=86 Identities=15% Similarity=0.178 Sum_probs=62.9
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHH--HhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhh
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLS--DFGVPYEIKILP---PHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVA 131 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~--~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-Lpgvv 131 (202)
.+|.||++... +....++..+.|+ ..|+.+ .+.+ .+-+.+.+.+.++.+.+.++++||++.|++.. .+.++
T Consensus 481 ~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~--~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGGSviD~AK~i 558 (862)
T PRK13805 481 KRAFIVTDRFMVELGYVDKVTDVLKKRENGVEY--EVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGGSPMDAAKIM 558 (862)
T ss_pred CEEEEEECcchhhcchHHHHHHHHhcccCCCeE--EEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHH
Confidence 57899987544 3347788889998 666654 4443 57777999999999988899999999998543 33344
Q ss_pred hh-----------------------------ccCCcEEEecCCC
Q 028883 132 AA-----------------------------NSQILVIRVPLLS 146 (202)
Q Consensus 132 A~-----------------------------~T~~PVIgVP~~~ 146 (202)
|. ...+|+|.||+..
T Consensus 559 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTa 602 (862)
T PRK13805 559 WLFYEHPETDFEDLAQKFMDIRKRIYKFPKLGKKAKLVAIPTTS 602 (862)
T ss_pred HHHHhCCCCCHHHHHHHhcccccccccccccCCCCcEEEeeCCC
Confidence 32 1357999999974
No 60
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=93.70 E-value=0.48 Score=43.46 Aligned_cols=84 Identities=13% Similarity=-0.005 Sum_probs=55.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhc---CceEEEEecCCcCchhh-hhhh-
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER---GIKIIIVGDGVEAHLSG-VAAA- 133 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~---g~~ViIa~AG~aa~Lpg-vvA~- 133 (202)
++.|+++..- .. ++..+.|++.|+.+.+. -+...=+.+.+++.++.+++. ++++||++-|++.-=.+ .+|.
T Consensus 27 ~~lvvtd~~~-~~--~~v~~~L~~~g~~~~~f~~v~~nPt~~~v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~AKaia~~ 103 (347)
T cd08184 27 PAVFFVDDVF-QG--KDLISRLPVESEDMIIWVDATEEPKTDQIDALTAQVKSFDGKLPCAIVGIGGGSTLDVAKAVSNM 103 (347)
T ss_pred eEEEEECcch-hh--hHHHHHHHhcCCcEEEEcCCCCCcCHHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHH
Confidence 4666675333 32 56777788888876653 234566667788888888766 89999999998643222 2221
Q ss_pred -----------------ccCCcEEEecCCC
Q 028883 134 -----------------NSQILVIRVPLLS 146 (202)
Q Consensus 134 -----------------~T~~PVIgVP~~~ 146 (202)
...+|+|.||+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~PlIaVPTTa 133 (347)
T cd08184 104 LTNPGSAEDYQGWDLVKNPAVYKIGIPTLS 133 (347)
T ss_pred HhCCCCHHHhcccccccCCCCcEEEEeCCC
Confidence 1247899999964
No 61
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=93.56 E-value=0.49 Score=44.50 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=69.1
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc----hhhhhh
Q 028883 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSGVAA 132 (202)
Q Consensus 59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~----LpgvvA 132 (202)
.++.||++.. .....+++..+.|+.-||+|.+ .=...+-+-+.+.+-++.+++.+++.||++-|+|.. +-.+++
T Consensus 30 ~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~i~~~~ 109 (377)
T COG1454 30 KRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGGSVIDAAKAIALLA 109 (377)
T ss_pred CceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCccHHHHHHHHHHHh
Confidence 4788888875 6678999999999999988775 334577778888888899999999999999999853 333444
Q ss_pred hcc---------------CCcEEEecCCC
Q 028883 133 ANS---------------QILVIRVPLLS 146 (202)
Q Consensus 133 ~~T---------------~~PVIgVP~~~ 146 (202)
.+. ..|+|.+|+..
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~plIaIPTTa 138 (377)
T COG1454 110 ENPGSVLDYEGIGKVKKPKAPLIAIPTTA 138 (377)
T ss_pred hCCchhhhhcccccccCCCCCEEEecCCC
Confidence 432 17999999975
No 62
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=93.18 E-value=0.4 Score=44.41 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHH-hCCCeEEEEEccCCCc-------hHHHHHHHHHhh-cCceEEEEecCCcCchhhhhhhcc----CCc
Q 028883 72 PVMNDAARTLSD-FGVPYEIKILPPHQNC-------KEALSYALSAKE-RGIKIIIVGDGVEAHLSGVAAANS----QIL 138 (202)
Q Consensus 72 ~v~~~a~~~L~~-~gi~~ev~V~SaHRtp-------~~l~~~~~~~~~-~g~~ViIa~AG~aa~LpgvvA~~T----~~P 138 (202)
+..++.++-+++ .+=||-+-.-+ ++| +-..|+.++.+. -.++-++++.|..+..+|++++.. ..+
T Consensus 132 ~~~~~~~e~~~~~g~kpyvIp~GG--~~~~g~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ 209 (323)
T COG2515 132 ASAEELAEEVRKQGGKPYVIPEGG--SSPLGALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVE 209 (323)
T ss_pred hhhHHHHHHHHhcCCCCcEeccCC--cCccccccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCc
Confidence 566667766665 55555543333 444 445666666654 557999999999999999999987 889
Q ss_pred EEEecCCCC
Q 028883 139 VIRVPLLSE 147 (202)
Q Consensus 139 VIgVP~~~~ 147 (202)
|||||++..
T Consensus 210 ViG~~v~~~ 218 (323)
T COG2515 210 VIGIDVSAD 218 (323)
T ss_pred eEEEeecCC
Confidence 999999874
No 63
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.09 E-value=0.46 Score=34.96 Aligned_cols=74 Identities=12% Similarity=0.000 Sum_probs=49.6
Q ss_pred CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
..|.|+|-|++|. |.+.++.+.|+++|++|+..=+..+ ++ ..+.+. + ..+..
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~--~~-~~~~l~---~-------------------~~g~~ 62 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILED--EE-VRQGLK---E-------------------YSNWP 62 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCC--HH-HHHHHH---H-------------------HhCCC
Confidence 4688888877655 5778999999999999887655443 33 222222 1 23567
Q ss_pred CCcEEEecCCCCCCChhh-HHHhhc
Q 028883 136 QILVIRVPLLSEDWSEDD-VINSIR 159 (202)
Q Consensus 136 ~~PVIgVP~~~~~l~G~D-LlS~vq 159 (202)
+.|+|= +.+..++|.| |..+-+
T Consensus 63 tvP~vf--i~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 63 TFPQLY--VNGELVGGCDIVKEMHE 85 (90)
T ss_pred CCCEEE--ECCEEEeCHHHHHHHHH
Confidence 788874 3455678888 887654
No 64
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=93.08 E-value=0.46 Score=41.51 Aligned_cols=83 Identities=18% Similarity=0.114 Sum_probs=56.6
Q ss_pred eEEEEecCCCC--HHHHHHHHHHHHHhCCCe---EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883 60 IVGIIMESDLD--LPVMNDAARTLSDFGVPY---EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134 (202)
Q Consensus 60 ~V~IimGS~SD--~~v~~~a~~~L~~~gi~~---ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 134 (202)
+|+|+--...| .+..+...+.|++.|+.- ++.+-.+.+.++++.++++++.....++||++...++ .. +....
T Consensus 1 ~v~i~~~~~~~~~~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~l~~~~~DlIi~~gt~aa-~~-~~~~~ 78 (294)
T PF04392_consen 1 KVGILQFISHPALDDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARKLKAQKPDLIIAIGTPAA-QA-LAKHL 78 (294)
T ss_dssp EEEEEESS--HHHHHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHHHCCTS-SEEEEESHHHH-HH-HHHH-
T ss_pred CeEEEEEeccHHHHHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeCcHHH-HH-HHHhc
Confidence 46666655555 566777888999999875 7888999999999999999998888999998855443 32 33444
Q ss_pred cC-CcEEEecC
Q 028883 135 SQ-ILVIRVPL 144 (202)
Q Consensus 135 T~-~PVIgVP~ 144 (202)
.. .||+-+-+
T Consensus 79 ~~~iPVVf~~V 89 (294)
T PF04392_consen 79 KDDIPVVFCGV 89 (294)
T ss_dssp SS-S-EEEECE
T ss_pred CCCcEEEEEec
Confidence 55 89998887
No 65
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=92.95 E-value=0.38 Score=39.52 Aligned_cols=81 Identities=20% Similarity=0.222 Sum_probs=50.9
Q ss_pred CchHHHHHHHHH-hhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCC-eeeEEecCCh
Q 028883 98 NCKEALSYALSA-KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHV-QVASVPRNNA 174 (202)
Q Consensus 98 tp~~l~~~~~~~-~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~Gv-pVatV~I~n~ 174 (202)
+.++..+.++++ ...|++|||+-.|.+ -.+-.+++.|||-+|++ |.| |.+..+-...- .++.|+-.|-
T Consensus 18 ~~e~~v~~a~~~~~~~g~dViIsRG~ta----~~lr~~~~iPVV~I~~s-----~~Dil~al~~a~~~~~~Iavv~~~~~ 88 (176)
T PF06506_consen 18 SLEEAVEEARQLLESEGADVIISRGGTA----ELLRKHVSIPVVEIPIS-----GFDILRALAKAKKYGPKIAVVGYPNI 88 (176)
T ss_dssp -HHHHHHHHHHHHTTTT-SEEEEEHHHH----HHHHCC-SS-EEEE--------HHHHHHHHHHCCCCTSEEEEEEESS-
T ss_pred cHHHHHHHHHHhhHhcCCeEEEECCHHH----HHHHHhCCCCEEEECCC-----HhHHHHHHHHHHhcCCcEEEEecccc
Confidence 457788888888 788999999966544 45667789999999975 567 33333332222 3788887877
Q ss_pred hhHHHHHHHHHcc
Q 028883 175 KNAALYAVKVLGI 187 (202)
Q Consensus 175 ~NAAl~Aa~IL~~ 187 (202)
..-.-...++|++
T Consensus 89 ~~~~~~~~~ll~~ 101 (176)
T PF06506_consen 89 IPGLESIEELLGV 101 (176)
T ss_dssp SCCHHHHHHHHT-
T ss_pred cHHHHHHHHHhCC
Confidence 7666666778876
No 66
>PRK13055 putative lipid kinase; Reviewed
Probab=92.74 E-value=0.75 Score=41.48 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=53.3
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc---CCcEEE-
Q 028883 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIR- 141 (202)
Q Consensus 66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T---~~PVIg- 141 (202)
|+.......+++...|++.|+.+++....-+ +....++++++...++++|| ++|+.+.|--++.++- ..|.+|
T Consensus 14 G~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~--~~~a~~~~~~~~~~~~d~vv-v~GGDGTl~evvngl~~~~~~~~Lgi 90 (334)
T PRK13055 14 GQEIMKKNVADILDILEQAGYETSAFQTTPE--PNSAKNEAKRAAEAGFDLII-AAGGDGTINEVVNGIAPLEKRPKMAI 90 (334)
T ss_pred CchhHHHHHHHHHHHHHHcCCeEEEEEeecC--CccHHHHHHHHhhcCCCEEE-EECCCCHHHHHHHHHhhcCCCCcEEE
Confidence 5555566778889999999998776655433 34556667766666778666 6699999998888864 235566
Q ss_pred ecCC
Q 028883 142 VPLL 145 (202)
Q Consensus 142 VP~~ 145 (202)
+|.-
T Consensus 91 iP~G 94 (334)
T PRK13055 91 IPAG 94 (334)
T ss_pred ECCC
Confidence 4543
No 67
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=92.55 E-value=6 Score=33.68 Aligned_cols=87 Identities=14% Similarity=0.256 Sum_probs=56.9
Q ss_pred CCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883 55 STDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 55 ~~~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv 131 (202)
..+...|+++..+.+| ..+.+.+.+.++++|+.. .+...+..+++..++++.+..++.+.+|........+...+
T Consensus 23 ~~~~~~I~vi~~~~~~~f~~~~~~~i~~~~~~~G~~~--~~~~~~~d~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l 100 (295)
T PRK10653 23 AMAKDTIALVVSTLNNPFFVSLKDGAQKEADKLGYNL--VVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAV 100 (295)
T ss_pred cccCCeEEEEecCCCChHHHHHHHHHHHHHHHcCCeE--EEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHH
Confidence 3345689999977665 334556667778898654 44556778888888888888888887777654433332222
Q ss_pred hh--ccCCcEEEec
Q 028883 132 AA--NSQILVIRVP 143 (202)
Q Consensus 132 A~--~T~~PVIgVP 143 (202)
.- ....|||.+-
T Consensus 101 ~~~~~~~ipvV~~~ 114 (295)
T PRK10653 101 KMANQANIPVITLD 114 (295)
T ss_pred HHHHHCCCCEEEEc
Confidence 22 2457888763
No 68
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=92.53 E-value=4.9 Score=32.79 Aligned_cols=78 Identities=14% Similarity=0.148 Sum_probs=50.2
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|++|..+.+| ....+.+.+.++++|+ ++.+......++...++++.+..++++.||......... .+. -..
T Consensus 2 igvi~~~~~~~~~~~~~~~i~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~--~l~~~~~~ 77 (267)
T cd06283 2 IGVIVADITNPFSSLVLKGIEDVCRAHGY--QVLVCNSDNDPEKEKEYLESLLAYQVDGLIVNPTGNNKE--LYQRLAKN 77 (267)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCcCEEEEeCCCCChH--HHHHHhcC
Confidence 6777766555 5566778888889985 445555555677777888888888888666655432221 121 224
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 78 ~ipvV~~ 84 (267)
T cd06283 78 GKPVVLV 84 (267)
T ss_pred CCCEEEE
Confidence 5688876
No 69
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=92.38 E-value=0.66 Score=42.27 Aligned_cols=87 Identities=10% Similarity=0.087 Sum_probs=57.8
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhhcC--ceEEEEecCCcCc-hhhhhhh
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKERG--IKIIIVGDGVEAH-LSGVAAA 133 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~~g--~~ViIa~AG~aa~-LpgvvA~ 133 (202)
.+|.||++... +....++..+.|++. .+.+ .=.-.+-+.+.+.+..+.+.+.+ +++||++.|++.. .+..+|.
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~--~~~~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGGSviD~aK~ia~ 101 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR--LAALIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGGSVIDTAKVLAV 101 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC--cEEEeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCccHHHHHHHHHH
Confidence 47899997643 245667777777543 2222 11336777788888888877766 8999999999754 2223333
Q ss_pred c----------------------cCCcEEEecCCCC
Q 028883 134 N----------------------SQILVIRVPLLSE 147 (202)
Q Consensus 134 ~----------------------T~~PVIgVP~~~~ 147 (202)
. ..+|+|.||+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~P~IaVPTTag 137 (355)
T TIGR03405 102 GLRRGEFDLLLQLLRNGRDFAPTARLPLVAIPTTAG 137 (355)
T ss_pred HHhCCCcccHHHHHhcCCccCCCCCCCEEEEcCCCc
Confidence 2 2479999999653
No 70
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=92.08 E-value=1.3 Score=38.51 Aligned_cols=83 Identities=14% Similarity=0.150 Sum_probs=48.9
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHh-CCCeEEEEEccCCCchH---------------------------------HHHHH
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDF-GVPYEIKILPPHQNCKE---------------------------------ALSYA 106 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~-gi~~ev~V~SaHRtp~~---------------------------------l~~~~ 106 (202)
|++++|.-+|+-.+....+.|++. ++++.+-+.+-|+.+.. ..++.
T Consensus 2 i~~~~gtr~~~~~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 81 (363)
T cd03786 2 ILVVTGTRPEYIKLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLE 81 (363)
T ss_pred EEEEEecCHHHHHHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHH
Confidence 556666666666666666666554 55555555555554432 22333
Q ss_pred HHHhhcCceEEEEecCCcCchhhhhhh-ccCCcEEEec
Q 028883 107 LSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVP 143 (202)
Q Consensus 107 ~~~~~~g~~ViIa~AG~aa~LpgvvA~-~T~~PVIgVP 143 (202)
+...+...+++++-......+++.+++ ....||+.+.
T Consensus 82 ~~l~~~~pDvV~~~g~~~~~~~~~~aa~~~~iPvv~~~ 119 (363)
T cd03786 82 AVLLEEKPDLVLVLGDTNETLAAALAAFKLGIPVAHVE 119 (363)
T ss_pred HHHHHhCCCEEEEeCCchHHHHHHHHHHHcCCCEEEEe
Confidence 333444578888874455667666555 5788999864
No 71
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=91.91 E-value=2.7 Score=34.55 Aligned_cols=81 Identities=22% Similarity=0.265 Sum_probs=63.8
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc--
Q 028883 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS-- 135 (202)
Q Consensus 61 V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T-- 135 (202)
|+||+.+.++- .+.+.+.+.++++|+.+++. ....-.+++..+.++++.+++++.||...--...+...+.-..
T Consensus 1 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~-~~~~~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~~~~~l~~~~~~ 79 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQQVIKGAKAAAKELGYEVEIV-FDAQNDPEEQIEQIEQAISQGVDGIIVSPVDPDSLAPFLEKAKAA 79 (257)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHHHTCEEEEE-EESTTTHHHHHHHHHHHHHTTESEEEEESSSTTTTHHHHHHHHHT
T ss_pred cEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEe-CCCCCCHHHHHHHHHHHHHhcCCEEEecCCCHHHHHHHHHHHhhc
Confidence 68888888884 34456777788899865555 6889999999999999999999999988777777777765543
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 80 gIpvv~~ 86 (257)
T PF13407_consen 80 GIPVVTV 86 (257)
T ss_dssp TSEEEEE
T ss_pred CceEEEE
Confidence 5799985
No 72
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=91.71 E-value=1.2 Score=39.10 Aligned_cols=81 Identities=23% Similarity=0.272 Sum_probs=54.6
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC-----
Q 028883 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ----- 136 (202)
Q Consensus 62 ~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~----- 136 (202)
.|+=|..+.....++..+.|++.|+.|++... +.+....++++++...+.++|| ++|+.+.+--|+.++..
T Consensus 4 ~I~N~~~~~~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-~~GGDGTi~ev~ngl~~~~~~~ 79 (293)
T TIGR03702 4 LILNGKQADNEDVREAVGDLRDEGIQLHVRVT---WEKGDAQRYVAEALALGVSTVI-AGGGDGTLREVATALAQIRDDA 79 (293)
T ss_pred EEEeCCccchhHHHHHHHHHHHCCCeEEEEEe---cCCCCHHHHHHHHHHcCCCEEE-EEcCChHHHHHHHHHHhhCCCC
Confidence 34444444555677788889999998877733 3355566777777666777655 78999999888888742
Q ss_pred -CcEEEecCCC
Q 028883 137 -ILVIRVPLLS 146 (202)
Q Consensus 137 -~PVIgVP~~~ 146 (202)
.|.--+|.-+
T Consensus 80 ~~~lgiiP~GT 90 (293)
T TIGR03702 80 APALGLLPLGT 90 (293)
T ss_pred CCcEEEEcCCc
Confidence 2454466554
No 73
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.68 E-value=2.7 Score=40.89 Aligned_cols=117 Identities=10% Similarity=0.130 Sum_probs=76.7
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCCCCChh
Q 028883 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSED 152 (202)
Q Consensus 74 ~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~-~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~ 152 (202)
.+-+.++..++.-..++.|. -...+...+++ +.+...|++|||+-.|.+ .++-..+++|||-++++ |.
T Consensus 16 ~~~~~~i~~~~~~~~~~~v~--~~~~~~~~~~a~~~~~~~~~dviIsrG~ta----~~i~~~~~iPVv~i~~s-----~~ 84 (526)
T TIGR02329 16 FDLFRDIAPEFDHRANITPI--QLGFEDAVREIRQRLGAERCDVVVAGGSNG----AYLKSRLSLPVIVIKPT-----GF 84 (526)
T ss_pred HHHHHHHHHhCCCCceEEEE--eccHHHHHHHHHHHHHhCCCcEEEECchHH----HHHHHhCCCCEEEecCC-----hh
Confidence 44455666666643344443 23456666666 446677899999965544 35667789999998875 46
Q ss_pred hHHHhhcCCCCC--eeeEEecCChhhHHHHHHHHHccC--------CHHHHHHHHHHHh
Q 028883 153 DVINSIRMPSHV--QVASVPRNNAKNAALYAVKVLGIA--------DEDLLERIRKYVE 201 (202)
Q Consensus 153 DLlS~vqMP~Gv--pVatV~I~n~~NAAl~Aa~IL~~~--------d~~l~~kl~~~~~ 201 (202)
|++..++-..+. .+++|+-.+-.+.+-.-..+|+.. .++++..+++.++
T Consensus 85 Dil~al~~a~~~~~~ia~vg~~~~~~~~~~~~~ll~~~i~~~~~~~~~e~~~~~~~l~~ 143 (526)
T TIGR02329 85 DVMQALARARRIASSIGVVTHQDTPPALRRFQAAFNLDIVQRSYVTEEDARSCVNDLRA 143 (526)
T ss_pred hHHHHHHHHHhcCCcEEEEecCcccHHHHHHHHHhCCceEEEEecCHHHHHHHHHHHHH
Confidence 744444332332 379998889888888888888763 2467777766654
No 74
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=91.65 E-value=0.51 Score=40.97 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=50.1
Q ss_pred CeEEEEecCCCCHHHH-----HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe----cCCcCchhh
Q 028883 59 PIVGIIMESDLDLPVM-----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG----DGVEAHLSG 129 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~-----~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~----AG~aa~Lpg 129 (202)
.+|+|++|+.|+.... ..+.+.|++.|+.+++- .... .+.+.+ ...++++++.. -|...++++
T Consensus 5 ~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i--~~~~---~~~~~~---~~~~~D~v~~~~~g~~~~~~~~~~ 76 (304)
T PRK01372 5 GKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPI--DPGE---DIAAQL---KELGFDRVFNALHGRGGEDGTIQG 76 (304)
T ss_pred cEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEE--ecCc---chHHHh---ccCCCCEEEEecCCCCCCccHHHH
Confidence 4799999999976655 89999999999975543 2221 222222 23457766654 345667787
Q ss_pred hhhhccCCcEEEecC
Q 028883 130 VAAANSQILVIRVPL 144 (202)
Q Consensus 130 vvA~~T~~PVIgVP~ 144 (202)
++..+ .+|++|-+.
T Consensus 77 ~le~~-gi~~~g~~~ 90 (304)
T PRK01372 77 LLELL-GIPYTGSGV 90 (304)
T ss_pred HHHHc-CCCccCCCH
Confidence 76544 777777543
No 75
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=91.62 E-value=1.8 Score=37.30 Aligned_cols=83 Identities=16% Similarity=0.095 Sum_probs=58.6
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc--
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-- 134 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~-- 134 (202)
+|+||..+.+| ..+.+.+.+.++++|..|++.+...+..+++-.++++++..++++.||..+.....+..++...
T Consensus 1 ~Igviv~~~~~~~~~~~~~gi~~~a~~~~~g~~~~~~~~~~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 80 (303)
T cd01539 1 KIGVFLYKFDDTFISLVRKNLEDIQKENGGKVEFTFYDAKNNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQ 80 (303)
T ss_pred CeEEEeeCCCChHHHHHHHHHHHHHHhhCCCeeEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHH
Confidence 46777765544 2334567777778666678888889999999999999888888987777654444455555443
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
-..|||.+
T Consensus 81 ~giPvV~~ 88 (303)
T cd01539 81 KNIPVIFF 88 (303)
T ss_pred CCCCEEEe
Confidence 36798875
No 76
>PRK11914 diacylglycerol kinase; Reviewed
Probab=91.55 E-value=1.4 Score=38.94 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=58.2
Q ss_pred CeEEEEe----cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883 59 PIVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134 (202)
Q Consensus 59 ~~V~Iim----GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 134 (202)
.++.||. |+.......+++.+.|++.|+.+++.... + +....++++++..++.++|| ++|+.+.+--++-++
T Consensus 9 ~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~--~-~~~~~~~a~~~~~~~~d~vv-v~GGDGTi~evv~~l 84 (306)
T PRK11914 9 GKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGT--D-AHDARHLVAAALAKGTDALV-VVGGDGVISNALQVL 84 (306)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeC--C-HHHHHHHHHHHHhcCCCEEE-EECCchHHHHHhHHh
Confidence 3455543 55556677888999999999877664332 2 67888888888777788655 789999988888775
Q ss_pred --cCCcEEEecCCC
Q 028883 135 --SQILVIRVPLLS 146 (202)
Q Consensus 135 --T~~PVIgVP~~~ 146 (202)
+..|+--+|.-+
T Consensus 85 ~~~~~~lgiiP~GT 98 (306)
T PRK11914 85 AGTDIPLGIIPAGT 98 (306)
T ss_pred ccCCCcEEEEeCCC
Confidence 345544445433
No 77
>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily. Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con
Probab=91.38 E-value=1.8 Score=33.94 Aligned_cols=85 Identities=15% Similarity=0.185 Sum_probs=55.8
Q ss_pred eEEEEecCC-CC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh-hhhhhc
Q 028883 60 IVGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAAN 134 (202)
Q Consensus 60 ~V~IimGS~-SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-gvvA~~ 134 (202)
+|+++..+. ++ ....+.+...++++|..+++.+......++...+.++++..++++.+|.......... .-.+..
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~~~~~~~ 80 (269)
T cd01391 1 KIGVLLPLSGSAPFGAQLLAGIELAAEEIGRGLEVILADSQSDPERALEALRDLIQQGVDGIIGPPSSSSALAVVELAAA 80 (269)
T ss_pred CceEEeecCCCcHHHHHHHHHHHHHHHHhCCceEEEEecCCCCHHHHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHH
Confidence 366666443 12 3334455566777677788888888999988888888888888888877655433321 122335
Q ss_pred cCCcEEEecC
Q 028883 135 SQILVIRVPL 144 (202)
Q Consensus 135 T~~PVIgVP~ 144 (202)
...|+|.+-.
T Consensus 81 ~~ip~v~~~~ 90 (269)
T cd01391 81 AGIPVVSLDA 90 (269)
T ss_pred cCCcEEEecC
Confidence 6789987643
No 78
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=91.33 E-value=8.7 Score=33.02 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=66.9
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA 133 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~ 133 (202)
+...|+++....+| ....+.+.+.+++.|. .+.+......+++..++++.+..++++-+|........- ..+.-
T Consensus 59 ~~~~Igvi~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-~~~~~ 135 (327)
T TIGR02417 59 RSRTIGLVIPDLENYSYARIAKELEQQCREAGY--QLLIACSDDNPDQEKVVIENLLARQVDALIVASCMPPED-AYYQK 135 (327)
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCh-HHHHH
Confidence 34689999875444 3345566667777775 556666777888888888888888888766654332111 22222
Q ss_pred --ccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHc
Q 028883 134 --NSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLG 186 (202)
Q Consensus 134 --~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~ 186 (202)
....||+-+=... ++.++..|..||-..+.+++-.++.
T Consensus 136 l~~~~iPvV~~~~~~---------------~~~~~~~V~~dn~~~~~~~~~~L~~ 175 (327)
T TIGR02417 136 LQNEGLPVVALDRSL---------------DDEHFCSVISDDVDAAAELIERLLS 175 (327)
T ss_pred HHhcCCCEEEEcccc---------------CCCCCCEEEeCcHHHHHHHHHHHHH
Confidence 2457887542211 0112345777887776666555553
No 79
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=91.23 E-value=1.1 Score=33.65 Aligned_cols=74 Identities=14% Similarity=0.087 Sum_probs=48.9
Q ss_pred CeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 59 PIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 59 ~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
..|.|.|-|++|+ |++.++.+.|+++|++|+.. -....++...+ +++ +.+..
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~--di~~~~~~~~~-l~~----------------------~tg~~ 66 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYV--NVLEDPEIRQG-IKE----------------------YSNWP 66 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEE--ECCCCHHHHHH-HHH----------------------HhCCC
Confidence 4799999887555 77789999999999998743 22233433222 221 23456
Q ss_pred CCcEEEecCCCCCCChhh-HHHhhc
Q 028883 136 QILVIRVPLLSEDWSEDD-VINSIR 159 (202)
Q Consensus 136 ~~PVIgVP~~~~~l~G~D-LlS~vq 159 (202)
+.|.|= +.+...+|.| |..+.+
T Consensus 67 tvP~vf--i~g~~iGG~ddl~~l~~ 89 (97)
T TIGR00365 67 TIPQLY--VKGEFVGGCDIIMEMYQ 89 (97)
T ss_pred CCCEEE--ECCEEEeChHHHHHHHH
Confidence 778774 4455578888 877665
No 80
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=91.11 E-value=7.9 Score=32.13 Aligned_cols=83 Identities=13% Similarity=0.133 Sum_probs=56.0
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhC---CCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFG---VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-- 132 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~g---i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-- 132 (202)
|+++..+.++ ..+.+.+.+.++++| ..|++.+......++...++.+.+..++++.||....-...+...+.
T Consensus 2 Ig~i~~~~~~~f~~~~~~gi~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~ 81 (274)
T cd06311 2 IGVSIPAADHGWTAGIVWHAQAAAKKLEAAYPDVEFILVTASNDTEQQNAQQDLLINRKIDALVILPFESAPLTQPVAKA 81 (274)
T ss_pred eeeeccCCCCcHHHHHHHHHHHHHHHhhhhCCCeEEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 5666655554 344556666677764 67888888887778888888888888888988877554444444432
Q ss_pred hccCCcEEEec
Q 028883 133 ANSQILVIRVP 143 (202)
Q Consensus 133 ~~T~~PVIgVP 143 (202)
.....|||.+-
T Consensus 82 ~~~gIpvV~~d 92 (274)
T cd06311 82 KKAGIFVVVVD 92 (274)
T ss_pred HHCCCeEEEEc
Confidence 24568998763
No 81
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=90.99 E-value=1.2 Score=38.83 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=54.3
Q ss_pred eEEEEe----cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 60 IVGIIM----ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 60 ~V~Iim----GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
++.||. |+.......+++.+.|++.|+.+++.... ++ ....++++.+...+.+++| ++|+.+.+-.++-++-
T Consensus 3 ~~~ii~Np~sg~~~~~~~~~~i~~~l~~~~~~~~~~~t~-~~--~~~~~~~~~~~~~~~d~iv-v~GGDGTl~~v~~~l~ 78 (293)
T TIGR00147 3 EAPAILNPTAGKSNDNKPLREVIMLLREEGMEIHVRVTW-EK--GDAARYVEEARKFGVDTVI-AGGGDGTINEVVNALI 78 (293)
T ss_pred eEEEEECCCccchhhHHHHHHHHHHHHHCCCEEEEEEec-Cc--ccHHHHHHHHHhcCCCEEE-EECCCChHHHHHHHHh
Confidence 455543 54455677888999999999987764432 22 1223445444455667655 5899999998887753
Q ss_pred ---CCcEEE-ecCCC
Q 028883 136 ---QILVIR-VPLLS 146 (202)
Q Consensus 136 ---~~PVIg-VP~~~ 146 (202)
..|.|| +|.-+
T Consensus 79 ~~~~~~~lgiiP~Gt 93 (293)
T TIGR00147 79 QLDDIPALGILPLGT 93 (293)
T ss_pred cCCCCCcEEEEcCcC
Confidence 457888 77654
No 82
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=90.49 E-value=8.8 Score=31.64 Aligned_cols=79 Identities=15% Similarity=0.180 Sum_probs=49.7
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
|+++....+| ....+.+.+.++++|. ++-+...+..++...++++....++++.+|...-. ....-.-.-....
T Consensus 2 Ig~i~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~-~~~~~~~~~~~~i 78 (263)
T cd06280 2 VGLIVADIRNPFFTAVSRAVEDAAYRAGL--RVILCNTDEDPEKEAMYLELMEEERVTGVIFAPTR-ATLRRLAELRLSF 78 (263)
T ss_pred EEEEecccccccHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-CCchHHHHHhcCC
Confidence 5666655443 3345666777888884 56667778888888888888888888866665422 2222111112356
Q ss_pred cEEEe
Q 028883 138 LVIRV 142 (202)
Q Consensus 138 PVIgV 142 (202)
|||.+
T Consensus 79 PvV~~ 83 (263)
T cd06280 79 PVVLI 83 (263)
T ss_pred CEEEE
Confidence 88876
No 83
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=90.15 E-value=2.5 Score=39.77 Aligned_cols=89 Identities=20% Similarity=0.260 Sum_probs=62.8
Q ss_pred HHHhCCCeEEEEEccC---CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-ccCCcEEEecCCCCCCChhhHHH
Q 028883 81 LSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQILVIRVPLLSEDWSEDDVIN 156 (202)
Q Consensus 81 L~~~gi~~ev~V~SaH---Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-~T~~PVIgVP~~~~~l~G~DLlS 156 (202)
++.++.+|++.-.-.| -|-+.+...++++.++|.++ |+.||+.+..--+..+ --..||+|+|.-....
T Consensus 65 ~~~~~~~~~v~~~~~~~~~tTa~DT~~~~r~~~~~gVdl-IvfaGGDGTarDVa~av~~~vPvLGipaGvk~~------- 136 (355)
T COG3199 65 AEASGFKYRVIRFQESTPRTTAEDTINAVRRMVERGVDL-IVFAGGDGTARDVAEAVGADVPVLGIPAGVKNY------- 136 (355)
T ss_pred HHhhcCcceEEeecccCCCccHHHHHHHHHHHHhcCceE-EEEeCCCccHHHHHhhccCCCceEeecccccee-------
Confidence 3445556665531111 34466777888888888775 6678999998888888 7899999999866532
Q ss_pred hhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 028883 157 SIRMPSHVQVASVPRNNAKNAALYAVKVLGI 187 (202)
Q Consensus 157 ~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~ 187 (202)
+||+ - ..+.-||.++.+.+.-
T Consensus 137 -----Sgvf--A---~~P~~aa~l~~~~lkg 157 (355)
T COG3199 137 -----SGVF--A---LSPEDAARLLGAFLKG 157 (355)
T ss_pred -----cccc--c---cChHHHHHHHHHHhcc
Confidence 4432 1 4888999999988876
No 84
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=90.08 E-value=9.4 Score=31.31 Aligned_cols=82 Identities=9% Similarity=0.112 Sum_probs=50.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh-hhhhhccC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQ 136 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-gvvA~~T~ 136 (202)
|+|+..+.++ ....+.+.+.++++|+ ++.+......+++..++++.+..++++.||.......... -.+.....
T Consensus 2 igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ 79 (269)
T cd06275 2 IGMLVTTSTNPFFAEVVRGVEQYCYRQGY--NLILCNTEGDPERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRH 79 (269)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCC
Confidence 6777765443 2334566677788885 5556666778888888888888888886666443222211 22222346
Q ss_pred CcEEEecC
Q 028883 137 ILVIRVPL 144 (202)
Q Consensus 137 ~PVIgVP~ 144 (202)
.||+-+-.
T Consensus 80 ipvV~i~~ 87 (269)
T cd06275 80 IPMVVMDW 87 (269)
T ss_pred CCEEEEec
Confidence 78886643
No 85
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=89.80 E-value=5.9 Score=31.63 Aligned_cols=82 Identities=15% Similarity=0.194 Sum_probs=54.2
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T 135 (202)
|+++.-..++ ....+.+...++++|+ ++.+...+..++...+.++++..++++.+|+.......+. .+.- ..
T Consensus 2 ig~v~~~~~~~~~~~~~~g~~~~~~~~g~--~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~-~~~~l~~~ 78 (264)
T cd01537 2 IGVLVPDLDNPFFAQVLKGIEEAAKAAGY--QVLLANSQNDAEKQLSALENLIARGVDGIIIAPSDLTAPT-IVKLARKA 78 (264)
T ss_pred eEEEEcCCCChHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCcchh-HHHHhhhc
Confidence 5666644322 3344555566777886 5666667778888888888888888998888766655554 3333 35
Q ss_pred CCcEEEecCC
Q 028883 136 QILVIRVPLL 145 (202)
Q Consensus 136 ~~PVIgVP~~ 145 (202)
..|||.+-..
T Consensus 79 ~ip~v~~~~~ 88 (264)
T cd01537 79 GIPVVLVDRD 88 (264)
T ss_pred CCCEEEeccC
Confidence 6899987543
No 86
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=89.53 E-value=4.3 Score=33.71 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=52.4
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 134 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~ 134 (202)
+|++++...++ ...++.+.+.+++.|+ ++.+......++.-.++++.+..++++.||..+.-...+.-.+.- .
T Consensus 1 ~igv~~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~ 78 (282)
T cd06318 1 KIGFSQYTLNSPFFAALTEAAKAHAKALGY--ELISTDAQGDLTKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKA 78 (282)
T ss_pred CeeEEeccccCHHHHHHHHHHHHHHHHcCC--EEEEEcCCCCHHHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHH
Confidence 47778776665 2234455667777875 566667777888888889989888998777765443333333322 2
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
-..|||-+
T Consensus 79 ~~iPvV~~ 86 (282)
T cd06318 79 AGVPVVVV 86 (282)
T ss_pred CCCCEEEe
Confidence 45677754
No 87
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=89.43 E-value=10 Score=30.87 Aligned_cols=78 Identities=12% Similarity=0.079 Sum_probs=51.0
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|++|.-+.++ ....+.+.+.++++|+ ++.+......+++..++++.+..++++.||....... ...+. -..
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~~~~~~ 77 (268)
T cd01575 2 VAVLVPSLSNSVFADVLQGISDVLEAAGY--QLLLGNTGYSPEREEELLRTLLSRRPAGLILTGLEHT--ERTRQLLRAA 77 (268)
T ss_pred EEEEeCCCcchhHHHHHHHHHHHHHHcCC--EEEEecCCCCchhHHHHHHHHHHcCCCEEEEeCCCCC--HHHHHHHHhc
Confidence 5566644333 3344566777888885 5666667778888888888888888887777654432 22332 234
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 78 ~ipvv~~ 84 (268)
T cd01575 78 GIPVVEI 84 (268)
T ss_pred CCCEEEE
Confidence 6799986
No 88
>PRK13337 putative lipid kinase; Reviewed
Probab=89.34 E-value=1.9 Score=38.17 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=51.9
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc---CCcEEEe
Q 028883 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS---QILVIRV 142 (202)
Q Consensus 66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T---~~PVIgV 142 (202)
|+.......++....|++.|++|++.... .+....++++++..++.++ |+++|+.+.|-.++.++. ..|.+|+
T Consensus 13 G~~~~~~~~~~~~~~l~~~~~~~~~~~t~---~~~~a~~~a~~~~~~~~d~-vvv~GGDGTl~~vv~gl~~~~~~~~lgi 88 (304)
T PRK13337 13 GRELFKKNLPDVLQKLEQAGYETSAHATT---GPGDATLAAERAVERKFDL-VIAAGGDGTLNEVVNGIAEKENRPKLGI 88 (304)
T ss_pred cchhHHHHHHHHHHHHHHcCCEEEEEEec---CCCCHHHHHHHHHhcCCCE-EEEEcCCCHHHHHHHHHhhCCCCCcEEE
Confidence 44343456677888899999988887665 3466667777776677776 457799999999998754 2244555
Q ss_pred cC
Q 028883 143 PL 144 (202)
Q Consensus 143 P~ 144 (202)
=+
T Consensus 89 iP 90 (304)
T PRK13337 89 IP 90 (304)
T ss_pred EC
Confidence 33
No 89
>PRK00861 putative lipid kinase; Reviewed
Probab=89.33 E-value=2.5 Score=37.20 Aligned_cols=76 Identities=25% Similarity=0.195 Sum_probs=52.0
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC--CcEEEec
Q 028883 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ--ILVIRVP 143 (202)
Q Consensus 66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~--~PVIgVP 143 (202)
|+.+.....+++...|++ +++|++..+... ....++++++...+.++|| ++|+.+.|-.++.++.. .|+--+|
T Consensus 14 G~~~~~~~~~~i~~~l~~-~~~~~~~~t~~~---~~a~~~a~~~~~~~~d~vv-~~GGDGTl~evv~~l~~~~~~lgviP 88 (300)
T PRK00861 14 GQGNPEVDLALIRAILEP-EMDLDIYLTTPE---IGADQLAQEAIERGAELII-ASGGDGTLSAVAGALIGTDIPLGIIP 88 (300)
T ss_pred CCCchhhhHHHHHHHHHh-cCceEEEEccCC---CCHHHHHHHHHhcCCCEEE-EECChHHHHHHHHHHhcCCCcEEEEc
Confidence 555555567788888887 578888877654 3456667777667778766 58999999999998743 3433355
Q ss_pred CCC
Q 028883 144 LLS 146 (202)
Q Consensus 144 ~~~ 146 (202)
.-+
T Consensus 89 ~GT 91 (300)
T PRK00861 89 RGT 91 (300)
T ss_pred CCc
Confidence 443
No 90
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=89.30 E-value=11 Score=30.87 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=49.5
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQ 136 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~ 136 (202)
|+++..+..| ..+.+.+.+.+++.|. ++.+...+..++...++++.+...+++.+|..... ....-..+ ....
T Consensus 2 i~vi~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l-~~~~ 78 (268)
T cd06298 2 VGVIIPDITNSYFAELARGIDDIATMYKY--NIILSNSDNDKEKELKVLNNLLAKQVDGIIFMGGKISEEHREEF-KRSP 78 (268)
T ss_pred EEEEECCCcchHHHHHHHHHHHHHHHcCC--eEEEEeCCCCHHHHHHHHHHHHHhcCCEEEEeCCCCcHHHHHHH-hcCC
Confidence 6777765444 3344566677778875 55566678889988888888877788877765432 21111111 2346
Q ss_pred CcEEEe
Q 028883 137 ILVIRV 142 (202)
Q Consensus 137 ~PVIgV 142 (202)
.|||.+
T Consensus 79 ipvV~~ 84 (268)
T cd06298 79 TPVVLA 84 (268)
T ss_pred CCEEEE
Confidence 788876
No 91
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=89.28 E-value=3.9 Score=33.68 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=54.4
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 134 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~ 134 (202)
+|+++..+.+| ....+.+.+.++++|+.+.+ ...=..|+...++++.+..++++.||...+........+.- .
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~ 78 (273)
T cd06305 1 RIAVVRYGGSGDFDQAYLAGTKAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALD 78 (273)
T ss_pred CeEEEeecCCCcHHHHHHHHHHHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHH
Confidence 47888876666 23456667778889876554 44445777777888887777899888887655444444432 3
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
-..|||.+
T Consensus 79 ~~ipvV~~ 86 (273)
T cd06305 79 AGIPVVAF 86 (273)
T ss_pred cCCCEEEe
Confidence 45788876
No 92
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=89.22 E-value=6.7 Score=32.19 Aligned_cols=78 Identities=14% Similarity=0.139 Sum_probs=51.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|+|+.-+.+| ....+.+.+.++++|+ .+-+.+....+++..++++...+++++.+|...... .+-++. -..
T Consensus 2 i~vv~p~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~--~~~~~~~l~~~ 77 (268)
T cd06273 2 IGAIVPTLDNAIFARVIQAFQETLAAHGY--TLLVASSGYDLDREYAQARKLLERGVDGLALIGLDH--SPALLDLLARR 77 (268)
T ss_pred eEEEeCCCCCchHHHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC--CHHHHHHHHhC
Confidence 6777765554 3445677788888985 555567778888888888888887888777653321 122222 235
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..||+.+
T Consensus 78 ~iPvv~~ 84 (268)
T cd06273 78 GVPYVAT 84 (268)
T ss_pred CCCEEEE
Confidence 6898876
No 93
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=89.13 E-value=11 Score=30.73 Aligned_cols=80 Identities=16% Similarity=0.306 Sum_probs=51.0
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T 135 (202)
|++|..+-+| ....+.+.+.++++|+ ++.+......+++..++++++..++++.+|...-........+.- .-
T Consensus 2 I~vv~~~~~~~~~~~~~~~i~~~~~~~g~--~v~~~~~~~~~~~~~~~~~~~~~~~~dgii~~~~~~~~~~~~l~~l~~~ 79 (268)
T cd06323 2 IGLSVSTLNNPFFVTLKDGAQKEAKELGY--ELTVLDAQNDAAKQLNDIEDLITRGVDAIIINPTDSDAVVPAVKAANEA 79 (268)
T ss_pred eeEecccccCHHHHHHHHHHHHHHHHcCc--eEEecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHC
Confidence 6677766555 4455677788888875 555666566888888888888777788766654332222233332 23
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 80 ~ipvv~~ 86 (268)
T cd06323 80 GIPVFTI 86 (268)
T ss_pred CCcEEEE
Confidence 5688766
No 94
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=89.00 E-value=1.4 Score=33.19 Aligned_cols=74 Identities=9% Similarity=-0.027 Sum_probs=49.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcE
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILV 139 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PV 139 (202)
.|.|.+ .+.=|.+.++.+.|+++|++|++.-+.-+ |+. .++.+.+.+ ..+..+.|+
T Consensus 9 ~Vvvys--k~~Cp~C~~ak~~L~~~~i~~~~vdid~~--~~~-~~~~~~l~~-------------------~tg~~tvP~ 64 (99)
T TIGR02189 9 AVVIFS--RSSCCMCHVVKRLLLTLGVNPAVHEIDKE--PAG-KDIENALSR-------------------LGCSPAVPA 64 (99)
T ss_pred CEEEEE--CCCCHHHHHHHHHHHHcCCCCEEEEcCCC--ccH-HHHHHHHHH-------------------hcCCCCcCe
Confidence 355544 46789999999999999999886555433 332 222222111 236788899
Q ss_pred EEecCCCCCCChhh-HHHhhc
Q 028883 140 IRVPLLSEDWSEDD-VINSIR 159 (202)
Q Consensus 140 IgVP~~~~~l~G~D-LlS~vq 159 (202)
|= +.+..++|.| |..+.+
T Consensus 65 Vf--i~g~~iGG~ddl~~l~~ 83 (99)
T TIGR02189 65 VF--VGGKLVGGLENVMALHI 83 (99)
T ss_pred EE--ECCEEEcCHHHHHHHHH
Confidence 85 4456789999 888876
No 95
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=88.89 E-value=12 Score=30.77 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=52.2
Q ss_pred EEEEecCCC---CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~S---D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|+|+.-+.+ .....+.+.+.++++| |++.+......++...++++.+..++++.+|........ ..+- ..-
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~ 77 (270)
T cd06296 2 IGLVFPDLDSPWASEVLRGVEEAAAAAG--YDVVLSESGRRTSPERQWVERLSARRTDGVILVTPELTS--AQRAALRRT 77 (270)
T ss_pred eEEEECCCCCccHHHHHHHHHHHHHHcC--CeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecCCCCh--HHHHHHhcC
Confidence 566765433 3556667778888887 467777888888888888888888888877776544221 1222 234
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 78 ~ipvV~i 84 (270)
T cd06296 78 GIPFVVV 84 (270)
T ss_pred CCCEEEE
Confidence 5688775
No 96
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=88.78 E-value=4 Score=30.00 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
...+++.+.++++|++++..+...+...+.+.+++ ++.++++||.+......+
T Consensus 56 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~~~a---~~~~~dlIV~G~~~~~~~ 108 (132)
T cd01988 56 KLLRQAERIAASLGVPVHTIIRIDHDIASGILRTA---KERQADLIIMGWHGSTSL 108 (132)
T ss_pred HHHHHHHHHhhhcCCceEEEEEecCCHHHHHHHHH---HhcCCCEEEEecCCCCCc
Confidence 44455666666789998877765554445555554 456789999888876654
No 97
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=88.64 E-value=4.7 Score=33.34 Aligned_cols=82 Identities=9% Similarity=0.153 Sum_probs=55.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T 135 (202)
|+++....+| ..+.+.+.+.++++|..|++.+......+++..++++.+...+++-||..........-.+.- ..
T Consensus 2 Ig~v~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~ 81 (271)
T cd06321 2 IGVSVGDLGNPFFVALAKGAEAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAA 81 (271)
T ss_pred eEEEecccCCHHHHHHHHHHHHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHC
Confidence 6777765555 234455667778888888888887788898888998888888888777665433222333332 24
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 82 ~ipvv~~ 88 (271)
T cd06321 82 GIVVVAV 88 (271)
T ss_pred CCeEEEe
Confidence 5799887
No 98
>COG0337 AroB 3-dehydroquinate synthetase [Amino acid transport and metabolism]
Probab=88.48 E-value=3.4 Score=38.91 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=95.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhhh
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAA 132 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~LpgvvA 132 (202)
++.||+=.+-.--+.++....|+..|+..+..++. .+++.+.+.++.+.+.+.++ +.+|+..|+ -+-|+|++|
T Consensus 35 k~~ivtd~~v~~~y~~~~~~~l~~~g~~v~~~~lp~GE~~Ksl~~~~~i~~~ll~~~~~R~s~iialGGGvigDlaGF~A 114 (360)
T COG0337 35 KVAIVTDETVAPLYLEKLLATLEAAGVEVDSIVLPDGEEYKSLETLEKIYDALLEAGLDRKSTLIALGGGVIGDLAGFAA 114 (360)
T ss_pred eEEEEECchhHHHHHHHHHHHHHhcCCeeeEEEeCCCcccccHHHHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHH
Confidence 78888877777778999999999999988766665 68888888887777766555 578887777 688999999
Q ss_pred h--ccCCcEEEecCCC-----CCCCh---------hhHHHhhcCCCCCeeeEEecC---------ChhhHHHH-HHHHHc
Q 028883 133 A--NSQILVIRVPLLS-----EDWSE---------DDVINSIRMPSHVQVASVPRN---------NAKNAALY-AVKVLG 186 (202)
Q Consensus 133 ~--~T~~PVIgVP~~~-----~~l~G---------~DLlS~vqMP~GvpVatV~I~---------n~~NAAl~-Aa~IL~ 186 (202)
| +--.+.|.||+.- ++.+| -+|....-.|..| . || .-+.+++. +++.--
T Consensus 115 aty~RGv~fiqiPTTLLAqVDSSVGGKtgIN~~~gKNmIGaF~qP~aV----i-~D~~~L~TLp~re~~~G~AEvIK~g~ 189 (360)
T COG0337 115 ATYMRGVRFIQIPTTLLAQVDSSVGGKTGINHPLGKNLIGAFYQPKAV----L-IDTDFLKTLPPRELRAGMAEVIKYGL 189 (360)
T ss_pred HHHHcCCCeEeccchHHHHhhcccccccccCCCCCcceeecccCCcEE----E-EchHHhccCCHHHHHHhHHHHHHHhh
Confidence 9 5789999999961 12222 2234444445532 2 33 33445543 345555
Q ss_pred cCCHHHHHHHHHH
Q 028883 187 IADEDLLERIRKY 199 (202)
Q Consensus 187 ~~d~~l~~kl~~~ 199 (202)
+.|+++++.|++.
T Consensus 190 I~D~~~f~~Le~~ 202 (360)
T COG0337 190 IADPEFFDWLEEN 202 (360)
T ss_pred hcCHHHHHHHHHH
Confidence 6788888888775
No 99
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=88.43 E-value=12 Score=30.33 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=69.2
Q ss_pred eEEEEecCCCC----HHHHHHHHHHHH-HhCCCeEEEEEccCC-------------CchHHHHHHHHHhhcCceEEEEec
Q 028883 60 IVGIIMESDLD----LPVMNDAARTLS-DFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 60 ~V~IimGS~SD----~~v~~~a~~~L~-~~gi~~ev~V~SaHR-------------tp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
+|.+|.||.+. ...++.+.+.++ +.|..++ +...+. .|+.+.++.+...+ ++.||.+.
T Consensus 1 kIl~i~GS~r~~s~t~~l~~~~~~~l~~~~g~ev~--~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--AD~iIi~t 76 (174)
T TIGR03566 1 KVVGVSGSLTRPSRTLALVEALVAELAARLGISPR--TIDLADLAPSLGGALWRSQLPPDAERILQAIES--ADLLVVGS 76 (174)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEE--EEEhhhcChhhccccccCCCCHHHHHHHHHHHH--CCEEEEEC
Confidence 58899999976 556666666664 4565433 333222 46778888887766 66666654
Q ss_pred C-----CcCchhhhh-----hhccCCcEEEecCCCCCCCh------hh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHH
Q 028883 122 G-----VEAHLSGVA-----AANSQILVIRVPLLSEDWSE------DD-VINSIRMPSHVQVASVPRNNAKNAALYAVKV 184 (202)
Q Consensus 122 G-----~aa~Lpgvv-----A~~T~~PVIgVP~~~~~l~G------~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~I 184 (202)
= .++.|=..+ ..+..+||+-+-+.++..+| +. ++..+.+.. +|..+...+..+. -
T Consensus 77 P~Y~~s~~~~LKn~lD~~~~~~l~~K~~~~v~~~g~~~~~~~~~~~l~~~~~~l~~~~-~~~~~~~~~~~~~-------~ 148 (174)
T TIGR03566 77 PVYRGSYTGLFKHLFDLVDPNALIGKPVLLAATGGSERHALMVEHQLRPLFGFFQALT-LPTGVYASDADFA-------D 148 (174)
T ss_pred CcCcCcCcHHHHHHHHhcCHhHhCCCEEEEEEecCCccchHHHHHHHHHHHHHhCccc-ccceEEEEhhhhc-------c
Confidence 3 333333333 23567888777555443333 33 444555411 1221111111111 1
Q ss_pred HccCCHHHHHHHHHHH
Q 028883 185 LGIADEDLLERIRKYV 200 (202)
Q Consensus 185 L~~~d~~l~~kl~~~~ 200 (202)
-.+.|++++++|+..-
T Consensus 149 g~l~d~~~~~~l~~~~ 164 (174)
T TIGR03566 149 YRLASEALRARIALAV 164 (174)
T ss_pred ccccCHHHHHHHHHHH
Confidence 2246888888887653
No 100
>PRK13054 lipid kinase; Reviewed
Probab=88.41 E-value=3.2 Score=36.60 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 71 ~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
.....+....|++-|+.|++... +.+....++++++...+.+++| ++|+.+.|-.|+.++.
T Consensus 17 ~~~~~~~~~~l~~~g~~~~v~~t---~~~~~a~~~a~~~~~~~~d~vv-v~GGDGTl~evv~~l~ 77 (300)
T PRK13054 17 NEELREAVGLLREEGHTLHVRVT---WEKGDAARYVEEALALGVATVI-AGGGDGTINEVATALA 77 (300)
T ss_pred hHHHHHHHHHHHHcCCEEEEEEe---cCCCcHHHHHHHHHHcCCCEEE-EECCccHHHHHHHHHH
Confidence 45666777789999988777443 3355567778777667777655 7899999999998864
No 101
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=87.82 E-value=2.5 Score=39.28 Aligned_cols=80 Identities=18% Similarity=0.101 Sum_probs=65.0
Q ss_pred eEEEEe--cCCCCHHHHHHHHHHHHHhCC-CeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883 60 IVGIIM--ESDLDLPVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 136 (202)
Q Consensus 60 ~V~Iim--GS~SD~~v~~~a~~~L~~~gi-~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~ 136 (202)
+|+|.. --.+=....+-+.+.|+++|. ..++.+-++|-.+....++++++..++.+|||++++-+|- .+++.-.+
T Consensus 32 ~VaI~~~veHpaLd~~~~G~~~aLk~~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq--~~~s~~~~ 109 (322)
T COG2984 32 TVAITQFVEHPALDAAREGVKEALKDAGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ--ALVSATKT 109 (322)
T ss_pred eEEEEEeecchhHHHHHHHHHHHHHhcCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHH--HHHHhcCC
Confidence 466643 344445677888899999999 7889999999999999999999999999999999887654 36666677
Q ss_pred CcEEE
Q 028883 137 ILVIR 141 (202)
Q Consensus 137 ~PVIg 141 (202)
+||+-
T Consensus 110 iPVV~ 114 (322)
T COG2984 110 IPVVF 114 (322)
T ss_pred CCEEE
Confidence 89984
No 102
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=87.47 E-value=10 Score=30.93 Aligned_cols=78 Identities=12% Similarity=0.106 Sum_probs=50.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T 135 (202)
|+|+....++ ....+...+.++++|+ ++.+...++.+++..++++++.+.+++.+|...... . +..+.. ..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~~dgii~~~~~~-~-~~~~~~~~~~ 77 (259)
T cd01542 2 IGVIVPRLDSFSTSRTVKGILAALYENGY--QMLLMNTNFSIEKEIEALELLARQKVDGIILLATTI-T-DEHREAIKKL 77 (259)
T ss_pred eEEEecCCccchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC-C-HHHHHHHhcC
Confidence 6777754443 2345566667777885 555666778899988999988888898777764321 1 122222 23
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 78 ~ipvv~~ 84 (259)
T cd01542 78 NVPVVVV 84 (259)
T ss_pred CCCEEEE
Confidence 5788876
No 103
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=87.23 E-value=5.2 Score=33.17 Aligned_cols=84 Identities=17% Similarity=0.242 Sum_probs=52.5
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 134 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~ 134 (202)
+|+||.-+.+| ..+.+.+.+.+++.|+...+......+.++.-.+.++++..++++.+|.....+..+...+.. .
T Consensus 1 ~igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (275)
T cd06320 1 KYGVVLKTLSNEFWRSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKK 80 (275)
T ss_pred CeeEEEecCCCHHHHHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHH
Confidence 46777766555 233456667778888755544444457787777888888788888777665433333333332 3
Q ss_pred cCCcEEEec
Q 028883 135 SQILVIRVP 143 (202)
Q Consensus 135 T~~PVIgVP 143 (202)
-..|||.+-
T Consensus 81 ~~iPvV~~~ 89 (275)
T cd06320 81 KGIPVVNVN 89 (275)
T ss_pred CCCeEEEEC
Confidence 467998774
No 104
>PRK10481 hypothetical protein; Provisional
Probab=87.04 E-value=5.2 Score=35.15 Aligned_cols=80 Identities=15% Similarity=0.222 Sum_probs=58.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc-CCCchHHHHHHHHHhhcCce-EEEEecCCcCchhhhhhhccC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIK-IIIVGDGVEAHLSGVAAANSQ 136 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa-HRtp~~l~~~~~~~~~~g~~-ViIa~AG~aa~LpgvvA~~T~ 136 (202)
.+++|++=.... ..+..+-..++|++..+...|. +-+++.+.+.+++....|++ +++.|+|++......+.-.+.
T Consensus 130 ~riGVitP~~~q---i~~~~~kw~~~G~~v~~~~aspy~~~~~~l~~aa~~L~~~gaD~Ivl~C~G~~~~~~~~le~~lg 206 (224)
T PRK10481 130 HQVGVIVPVEEQ---LAQQAQKWQVLQKPPVFALASPYHGSEEELIDAGKELLDQGADVIVLDCLGYHQRHRDLLQKALD 206 (224)
T ss_pred CeEEEEEeCHHH---HHHHHHHHHhcCCceeEeecCCCCCCHHHHHHHHHHhhcCCCCEEEEeCCCcCHHHHHHHHHHHC
Confidence 589999855333 3333333444588877777775 45555888888888778886 788999999777999999999
Q ss_pred CcEEE
Q 028883 137 ILVIR 141 (202)
Q Consensus 137 ~PVIg 141 (202)
+|||-
T Consensus 207 ~PVI~ 211 (224)
T PRK10481 207 VPVLL 211 (224)
T ss_pred cCEEc
Confidence 99983
No 105
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=86.90 E-value=6.5 Score=32.51 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=57.5
Q ss_pred eEEEEecCCCCH---HHHHHHHHHHHHh---CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883 60 IVGIIMESDLDL---PVMNDAARTLSDF---GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA- 132 (202)
Q Consensus 60 ~V~IimGS~SD~---~v~~~a~~~L~~~---gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA- 132 (202)
+|+++....+|. ...+.+.+.++++ |..+++.+....-.++...+.++++..++++.||........+...+.
T Consensus 1 ~Ig~i~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~ 80 (272)
T cd06300 1 KIGLSNSYAGNTWRAQMLDEFKAQAKELKKAGLISEFIVTSADGDVAQQIADIRNLIAQGVDAIIINPASPTALNPVIEE 80 (272)
T ss_pred CeEEeccccCChHHHHHHHHHHHHHHhhhccCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 467777555542 3455666777788 877788888776688888888888888889888887755443443332
Q ss_pred -hccCCcEEEec
Q 028883 133 -ANSQILVIRVP 143 (202)
Q Consensus 133 -~~T~~PVIgVP 143 (202)
..-..|||.+-
T Consensus 81 ~~~~~iPvv~~~ 92 (272)
T cd06300 81 ACEAGIPVVSFD 92 (272)
T ss_pred HHHCCCeEEEEe
Confidence 23467999874
No 106
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=86.49 E-value=5.8 Score=32.75 Aligned_cols=81 Identities=14% Similarity=0.195 Sum_probs=50.7
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEc--cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP--PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 133 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~S--aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~- 133 (202)
+|+||...-+| ....+.+.+.+++.|. .+.+.. ....+++..++++++...+++-+|........+...+..
T Consensus 1 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~ 78 (273)
T cd06310 1 KIALVPKGTTSDFWQAVKAGAEAAAKELGV--KVTFQGPASETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEA 78 (273)
T ss_pred CeEEEecCCCcHHHHHHHHHHHHHHHHcCC--EEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHH
Confidence 57888765444 2334555566777875 455543 357888888888888777788777654433323344443
Q ss_pred -ccCCcEEEe
Q 028883 134 -NSQILVIRV 142 (202)
Q Consensus 134 -~T~~PVIgV 142 (202)
....|||.+
T Consensus 79 ~~~~ipvV~~ 88 (273)
T cd06310 79 KDAGIPVVLI 88 (273)
T ss_pred HHCCCCEEEe
Confidence 345688876
No 107
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=86.18 E-value=2.8 Score=28.95 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCC--eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecC
Q 028883 67 SDLDLPVMNDAARTLSDFGVP--YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 144 (202)
Q Consensus 67 S~SD~~v~~~a~~~L~~~gi~--~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~ 144 (202)
+.+.=|.++++...|++++++ |++.-+......+.+.+++.+. .+....|+|= +
T Consensus 5 ~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~----------------------~g~~~vP~v~--i 60 (84)
T TIGR02180 5 SKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEI----------------------TGQRTVPNIF--I 60 (84)
T ss_pred ECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHH----------------------hCCCCCCeEE--E
Confidence 456678999999999999998 7766666666666666554321 2345677763 4
Q ss_pred CCCCCChhh-HHHhhc
Q 028883 145 LSEDWSEDD-VINSIR 159 (202)
Q Consensus 145 ~~~~l~G~D-LlS~vq 159 (202)
.+..++|.| +..+.+
T Consensus 61 ~g~~igg~~~~~~~~~ 76 (84)
T TIGR02180 61 NGKFIGGCSDLLALYK 76 (84)
T ss_pred CCEEEcCHHHHHHHHH
Confidence 455678888 888876
No 108
>cd00578 L-fuc_L-ara-isomerases L-fucose isomerase (FucIase) and L-arabinose isomerase (AI) family; composed of FucIase, AI and similar proteins. FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose in glycolysis). L-fucose (or 6-deoxy-L-galactose) is found in various oligo- and polysaccharides in mammals, bacteria and plants. AI catalyzes the isomerization of L-arabinose to L-ribulose, the first reaction in its conversion to D-xylulose-5-phosphate, an intermediate in the pentose phosphate pathway, which allows L-arabinose to be used as a carbon source. AI can also convert D-galactose to D-tagatose at elevated temperatures in the presence of divalent metal ions. D-tagatose, rarely found in nature, is of commercial interest as a low-calorie sugar substitute.
Probab=86.09 E-value=13 Score=34.79 Aligned_cols=85 Identities=18% Similarity=0.090 Sum_probs=54.8
Q ss_pred CeEEEEecCCC---CHH------HHHHHHHHHHHhCCCeEEEEEccC-CCchHHHHHHHHHhhcCceEEEE--ecCCcCc
Q 028883 59 PIVGIIMESDL---DLP------VMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIV--GDGVEAH 126 (202)
Q Consensus 59 ~~V~IimGS~S---D~~------v~~~a~~~L~~~gi~~ev~V~SaH-Rtp~~l~~~~~~~~~~g~~ViIa--~AG~aa~ 126 (202)
++|+++.+|.. ..+ ..++..+.|++.+ +++...+.= .+++...+..+.+++.+++.+|+ ..+...+
T Consensus 1 ~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~vv~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~tf~~~~ 78 (452)
T cd00578 1 PKIGFVTGSQHLYGEELLEQVEEYAREVADLLNELP--VEVVDKPEVTGTPDEARKAAEEFNEANCDGLIVWMHTFGPAK 78 (452)
T ss_pred CEEEEEEecccccChhHHHHHHHHHHHHHHHHhcCC--ceEEecCcccCCHHHHHHHHHHHhhcCCcEEEEcccccccHH
Confidence 47899999988 332 3344455555554 455444433 48889999999998888887766 4555555
Q ss_pred hhhhhhhccCCcEEEecCC
Q 028883 127 LSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 127 LpgvvA~~T~~PVIgVP~~ 145 (202)
+-.-.+....+||+-.-+.
T Consensus 79 ~~~~~~~~~~~Pvll~a~~ 97 (452)
T cd00578 79 MWIAGLSELRKPVLLLATQ 97 (452)
T ss_pred HHHHHHHhcCCCEEEEeCC
Confidence 4444445678898765443
No 109
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=85.23 E-value=13 Score=31.56 Aligned_cols=80 Identities=14% Similarity=0.277 Sum_probs=53.2
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|+|+....+| ....+.+.+.++++|+ ++.+......+++..++++++..++.+.||..+.-...+...+. ..-
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~ 79 (288)
T cd01538 2 IGLSLPTKTEERWIRDRPNFEAALKELGA--EVIVQNANGDPAKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADA 79 (288)
T ss_pred eEEEEeCCCcHHHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHC
Confidence 6778866555 2334566677778876 55566677788888889888888889988877643332333332 234
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 80 ~ipvV~~ 86 (288)
T cd01538 80 GIPVIAY 86 (288)
T ss_pred CCCEEEE
Confidence 6788876
No 110
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=84.95 E-value=16 Score=29.17 Aligned_cols=80 Identities=13% Similarity=0.082 Sum_probs=53.6
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
|+++.-+.++ ....+.+.+.++++|+. +.+......+++..+.++.+..++++.||........+.--.+.....
T Consensus 2 i~~v~~~~~~~~~~~~~~g~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~iii~~~~~~~~~~~~~~~~~i 79 (264)
T cd06267 2 IGVIVPDISNPFFAELLRGIEEAAREAGYS--VLLCNSDEDPEKEREALELLLSRRVDGIILAPSRLDDELLEELAALGI 79 (264)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHcCCE--EEEEcCCCCHHHHHHHHHHHHHcCcCEEEEecCCcchHHHHHHHHcCC
Confidence 5566654322 23334556666777764 455566677888888888888889999998887777665112345678
Q ss_pred cEEEe
Q 028883 138 LVIRV 142 (202)
Q Consensus 138 PVIgV 142 (202)
|||.+
T Consensus 80 pvv~~ 84 (264)
T cd06267 80 PVVLV 84 (264)
T ss_pred CEEEe
Confidence 99987
No 111
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=84.51 E-value=21 Score=29.36 Aligned_cols=80 Identities=11% Similarity=0.172 Sum_probs=52.4
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC---cCchhhhhhh-
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV---EAHLSGVAAA- 133 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~---aa~LpgvvA~- 133 (202)
|+||+.+..+ ....+.+.+.++++|. ++-+......+++..++++.+..++++-+|..... ...++..+..
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~ 79 (273)
T cd06292 2 VGLLVPELSNPIFPAFAEAIEAALAQYGY--TVLLCNTYRGGVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERL 79 (273)
T ss_pred EEEEeCCCcCchHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHH
Confidence 6777755433 2344567777788884 56677777888888899999888889877665322 1233344433
Q ss_pred -ccCCcEEEe
Q 028883 134 -NSQILVIRV 142 (202)
Q Consensus 134 -~T~~PVIgV 142 (202)
....|||-+
T Consensus 80 ~~~~ipvV~i 89 (273)
T cd06292 80 AERGLPVVLV 89 (273)
T ss_pred HhCCCCEEEE
Confidence 346788876
No 112
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=84.40 E-value=27 Score=30.37 Aligned_cols=81 Identities=14% Similarity=0.213 Sum_probs=56.0
Q ss_pred CeEEEEecCCCCHH---HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC---chhhhhh
Q 028883 59 PIVGIIMESDLDLP---VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA---HLSGVAA 132 (202)
Q Consensus 59 ~~V~IimGS~SD~~---v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa---~LpgvvA 132 (202)
..||||.-..++-- +++.+.+.+++.|. .+-++.....++.- ++++.+.++.++=||.. +... +|--...
T Consensus 2 ~~IGvivp~~~npff~~ii~gIe~~a~~~Gy--~l~l~~t~~~~~~e-~~i~~l~~~~vDGiI~~-s~~~~~~~l~~~~~ 77 (279)
T PF00532_consen 2 KTIGVIVPDISNPFFAEIIRGIEQEAREHGY--QLLLCNTGDDEEKE-EYIELLLQRRVDGIILA-SSENDDEELRRLIK 77 (279)
T ss_dssp CEEEEEESSSTSHHHHHHHHHHHHHHHHTTC--EEEEEEETTTHHHH-HHHHHHHHTTSSEEEEE-SSSCTCHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHHcCC--EEEEecCCCchHHH-HHHHHHHhcCCCEEEEe-cccCChHHHHHHHH
Confidence 47899999998864 44556666677765 77778888888888 99999988888744444 4433 3444443
Q ss_pred hccCCcEEEecCC
Q 028883 133 ANSQILVIRVPLL 145 (202)
Q Consensus 133 ~~T~~PVIgVP~~ 145 (202)
. ..||+-+=-.
T Consensus 78 ~--~iPvV~~~~~ 88 (279)
T PF00532_consen 78 S--GIPVVLIDRY 88 (279)
T ss_dssp T--TSEEEEESS-
T ss_pred c--CCCEEEEEec
Confidence 3 6898876544
No 113
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=84.16 E-value=18 Score=30.86 Aligned_cols=84 Identities=4% Similarity=0.077 Sum_probs=53.4
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhh
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAA 132 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA 132 (202)
+...|++++...++ ....+.+.+.+++.|. ++.+......+++..++++.+..++++-+|....... ...-.+.
T Consensus 55 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~ 132 (327)
T PRK10423 55 QTRTIGMLITASTNPFYSELVRGVERSCFERGY--SLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQ 132 (327)
T ss_pred CCCeEEEEeCCCCCCcHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHH
Confidence 34679999865443 3445667777888884 5666666677888888888887888886666543322 2222333
Q ss_pred hccCCcEEEe
Q 028883 133 ANSQILVIRV 142 (202)
Q Consensus 133 ~~T~~PVIgV 142 (202)
.....||+-+
T Consensus 133 ~~~~iPvV~i 142 (327)
T PRK10423 133 RYPSVPTVMM 142 (327)
T ss_pred hcCCCCEEEE
Confidence 2235788766
No 114
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=83.95 E-value=23 Score=29.26 Aligned_cols=80 Identities=14% Similarity=0.156 Sum_probs=52.2
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh---hhhh--
Q 028883 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS---GVAA-- 132 (202)
Q Consensus 61 V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp---gvvA-- 132 (202)
|+|+..+..|. .+.+.+.+.++++|+.. .+...-..+++-.+.++++..++++.||.....+.... ..+.
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ 79 (273)
T cd01541 2 IGVITTYISDYIFPSIIRGIESVLSEKGYSL--LLASTNNDPERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKL 79 (273)
T ss_pred eEEEeCCccchhHHHHHHHHHHHHHHcCCEE--EEEeCCCCHHHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHH
Confidence 67777654443 56667788888888654 45555677888888888888888998887655432211 2222
Q ss_pred hccCCcEEEe
Q 028883 133 ANSQILVIRV 142 (202)
Q Consensus 133 ~~T~~PVIgV 142 (202)
-....|||.+
T Consensus 80 ~~~~ipvV~~ 89 (273)
T cd01541 80 EKLGIPYVFI 89 (273)
T ss_pred HHCCCCEEEE
Confidence 2345788876
No 115
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=83.50 E-value=6.6 Score=27.06 Aligned_cols=69 Identities=16% Similarity=0.151 Sum_probs=48.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883 67 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 67 S~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
+..+=|.++++...|++++++|+..-...+.....+.+.+++ +.+....|++- +.+
T Consensus 6 ~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~----------------------~~g~~~~P~v~--~~g 61 (82)
T cd03419 6 SKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQE----------------------LTGQRTVPNVF--IGG 61 (82)
T ss_pred EcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHH----------------------HhCCCCCCeEE--ECC
Confidence 356779999999999999999887666666655555444432 23557788864 345
Q ss_pred CCCChhh-HHHhhc
Q 028883 147 EDWSEDD-VINSIR 159 (202)
Q Consensus 147 ~~l~G~D-LlS~vq 159 (202)
..++|.+ +..+.+
T Consensus 62 ~~igg~~~~~~~~~ 75 (82)
T cd03419 62 KFIGGCDDLMALHK 75 (82)
T ss_pred EEEcCHHHHHHHHH
Confidence 5678888 877766
No 116
>PF10096 DUF2334: Uncharacterized protein conserved in bacteria (DUF2334); InterPro: IPR018763 This group of proteins has no known function.
Probab=83.47 E-value=4.3 Score=35.41 Aligned_cols=52 Identities=21% Similarity=0.412 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchH-----------HHHHHHHHhhcCceEEEE
Q 028883 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE-----------ALSYALSAKERGIKIIIV 119 (202)
Q Consensus 68 ~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~-----------l~~~~~~~~~~g~~ViIa 119 (202)
.+|++.+++.++.|.+.|||+-+.|+.-|..|.. +.++++.++.+|..|+.=
T Consensus 12 ~~~~~~l~~i~d~l~~~~ipf~v~vIP~~~d~~~~~~~~l~~~~~f~~~L~~~~~~Gg~I~lH 74 (243)
T PF10096_consen 12 FSDLEKLKEIADYLYKYGIPFSVAVIPVYVDPNGGITVNLSDNPEFVEYLRYLQARGGEIVLH 74 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEecccCCCCcccccchhhHHHHHHHHHHHhcCCEEEEE
Confidence 6999999999999999999999999999887766 344566777888777653
No 117
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=83.36 E-value=24 Score=29.09 Aligned_cols=78 Identities=10% Similarity=0.159 Sum_probs=49.6
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC--cCchhhhhhhcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV--EAHLSGVAAANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~--aa~LpgvvA~~T 135 (202)
|+++..+.++ ....+.+.+.++++|+ ++.+..-...++...++++.+..++++-||...-. ...+.-... .
T Consensus 2 Ig~i~~~~~~~~~~~~~~gi~~~~~~~gy--~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~--~ 77 (269)
T cd06293 2 IGLVVPDIANPFFAELADAVEEEADARGL--SLVLCATRNRPERELTYLRWLDTNHVDGLIFVTNRPDDGALAKLIN--S 77 (269)
T ss_pred EEEEeCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHh--c
Confidence 6777765443 3566777888888985 44555444578888888888888889877665321 122323332 3
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||-+
T Consensus 78 ~~pvV~i 84 (269)
T cd06293 78 YGNIVLV 84 (269)
T ss_pred CCCEEEE
Confidence 4677765
No 118
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=83.15 E-value=14 Score=30.51 Aligned_cols=81 Identities=19% Similarity=0.282 Sum_probs=53.4
Q ss_pred eEEEEecCCCCH---HHHHHHHHHHHHh-CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883 60 IVGIIMESDLDL---PVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-- 133 (202)
Q Consensus 60 ~V~IimGS~SD~---~v~~~a~~~L~~~-gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-- 133 (202)
+|+++..+-+|. ...+.+.+.+++. |+ ++.+......++...++++++..++++.||....-...+...+..
T Consensus 1 ~ig~~~~~~~~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~ 78 (270)
T cd06308 1 VIGFSQCNLADPWRAAMNDEIQREASNYPDV--ELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAY 78 (270)
T ss_pred CEEEEeeCCCCHHHHHHHHHHHHHHHhcCCc--EEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHH
Confidence 478888877772 3455566666665 54 555666677888888888888888899887765443333333322
Q ss_pred ccCCcEEEe
Q 028883 134 NSQILVIRV 142 (202)
Q Consensus 134 ~T~~PVIgV 142 (202)
....||+.+
T Consensus 79 ~~~ipvV~~ 87 (270)
T cd06308 79 RAGIPVILL 87 (270)
T ss_pred HCCCCEEEe
Confidence 346788876
No 119
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=83.11 E-value=8 Score=36.61 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=93.9
Q ss_pred cCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc
Q 028883 16 RGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP 95 (202)
Q Consensus 16 ~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa 95 (202)
.|+|-+++.|-.-+...+.|.. .... .-.-.|=+|...|... .+.|++|.=.-+.+++-.
T Consensus 150 ~G~valvsqSG~~~~~~~~~~~-------------~~g~---g~s~~vs~Gn~~d~~~----~d~l~~l~~D~~t~~I~l 209 (447)
T TIGR02717 150 KGGIAFISQSGALLTALLDWAE-------------KNGV---GFSYFVSLGNKADIDE----SDLLEYLADDPDTKVILL 209 (447)
T ss_pred CCCEEEEechHHHHHHHHHHHH-------------hcCC---CcceEEECCchhhCCH----HHHHHHHhhCCCCCEEEE
Confidence 6999999999666655555543 1110 1235677888888654 466777665555555554
Q ss_pred C----CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEE------------EecCCCCCCCh-hh---HH
Q 028883 96 H----QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI------------RVPLLSEDWSE-DD---VI 155 (202)
Q Consensus 96 H----Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVI------------gVP~~~~~l~G-~D---Ll 155 (202)
| |.+.++.+.++.+.. +-.||+.-+|++.+=.-...++|--..= |+..-. +++- +| +|
T Consensus 210 y~E~~~~~~~f~~aa~~a~~-~KPVv~~k~Grs~~g~~aa~sHtgalag~~~~~~a~~~~~Gv~~~~-~~~el~~~~~~l 287 (447)
T TIGR02717 210 YLEGIKDGRKFLKTAREISK-KKPIVVLKSGTSEAGAKAASSHTGALAGSDEAYDAAFKQAGVIRAD-SIEELFDLARLL 287 (447)
T ss_pred EecCCCCHHHHHHHHHHHcC-CCCEEEEecCCChhhhhhhhhccccccChHHHHHHHHHHCCeEEeC-CHHHHHHHHHHH
Confidence 4 778888888877743 6689999999986433334455533220 111111 1111 22 33
Q ss_pred HhhcCCCCCeeeEEecCChhhHHHHHHHHHcc-------CCHHHHHHHHHH
Q 028883 156 NSIRMPSHVQVASVPRNNAKNAALYAVKVLGI-------ADEDLLERIRKY 199 (202)
Q Consensus 156 S~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~-------~d~~l~~kl~~~ 199 (202)
+....|+|=.+++| .|+-+.+.+++-.+.. ..++.+++|+++
T Consensus 288 ~~~~~~~g~rvaiv--s~sGG~g~l~aD~~~~~Gl~lp~ls~~t~~~L~~~ 336 (447)
T TIGR02717 288 SNQPLPKGNRVAII--TNAGGPGVIATDACEENGLELAELSEATKNKLRNI 336 (447)
T ss_pred hcCCCCCCCeEEEE--ECCchHHHHHHHHHHHcCCCcCCCCHHHHHHHHHh
Confidence 33334677778888 5666666666655433 345667777764
No 120
>PRK11175 universal stress protein UspE; Provisional
Probab=82.96 E-value=9 Score=32.93 Aligned_cols=68 Identities=18% Similarity=0.216 Sum_probs=43.1
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEecCC
Q 028883 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLL 145 (202)
Q Consensus 75 ~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP~~ 145 (202)
+++...++..|++++..+.--++..+.+.++ +++.+++.||.++-+...+.+. +.-+++.||+-||..
T Consensus 72 ~~~~~~~~~~~~~~~~~v~~~g~~~~~i~~~---a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 72 REQAKPYLDAGIPIEIKVVWHNRPFEAIIQE---VIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHHHHhhcCCceEEEEecCCCcHHHHHHH---HHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 3333444456777777665323333334444 4567899999988666666654 446789999999974
No 121
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=82.81 E-value=17 Score=29.98 Aligned_cols=80 Identities=19% Similarity=0.167 Sum_probs=53.3
Q ss_pred eEEEEecCCCCHHHHH----HHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-
Q 028883 60 IVGIIMESDLDLPVMN----DAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA- 133 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~----~a~~~L~~-~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~- 133 (202)
+|++|.-+.+| +... .+.+.+++ .| |++.+...-..++...+.++++.+++.+.||.........+-.+.-
T Consensus 1 ~igvi~~~~~~-~~~~~~~~gi~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l 77 (272)
T cd06301 1 KIGVSMANFDD-NFLTLLRNAMKEHAKVLGG--VELQFEDAKNDVATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAA 77 (272)
T ss_pred CeeEeecccCC-HHHHHHHHHHHHHHHHcCC--cEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHH
Confidence 47788766555 4444 45555666 55 5666666667888888888888788888777765554445555554
Q ss_pred -ccCCcEEEe
Q 028883 134 -NSQILVIRV 142 (202)
Q Consensus 134 -~T~~PVIgV 142 (202)
....|||.+
T Consensus 78 ~~~~iPvv~~ 87 (272)
T cd06301 78 NAAGIPLVYV 87 (272)
T ss_pred HHCCCeEEEe
Confidence 456799876
No 122
>PRK09492 treR trehalose repressor; Provisional
Probab=82.79 E-value=29 Score=29.56 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=43.8
Q ss_pred CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883 58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
...|+++....++ ...++.+.+.+++.|. ++-+......+++..++++.+..++++-+|..
T Consensus 62 ~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~ 125 (315)
T PRK09492 62 DKVVGIIVSRLDSLSENQAVRTMLPAFYEQGY--DPIIMESQFSPEKVNEHLGVLKRRNVDGVILF 125 (315)
T ss_pred CCeEEEEecCCcCcccHHHHHHHHHHHHHcCC--eEEEEecCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 3579999864333 3456777788888885 56666667788888888888877778866654
No 123
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=82.33 E-value=12 Score=31.18 Aligned_cols=80 Identities=14% Similarity=0.108 Sum_probs=50.9
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 134 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~ 134 (202)
+|++|..+.+| ....+.+.+.++++|+ ++.+.... .+++..+.++++..++++.||..+......+-.+-. .
T Consensus 1 ~Ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~-~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~~~~~~~ 77 (289)
T cd01540 1 KIGFIVKQPEEPWFQTEWKFAKKAAKEKGF--TVVKIDVP-DGEKVLSAIDNLGAQGAKGFVICVPDVKLGPAIVAKAKA 77 (289)
T ss_pred CeeeecCCCCCcHHHHHHHHHHHHHHHcCC--EEEEccCC-CHHHHHHHHHHHHHcCCCEEEEccCchhhhHHHHHHHHh
Confidence 47777766555 2234456777888885 55566665 677777788888788888777765433233433332 3
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
...|||.+
T Consensus 78 ~~iPvV~~ 85 (289)
T cd01540 78 YNMKVVAV 85 (289)
T ss_pred CCCeEEEe
Confidence 56799876
No 124
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=82.23 E-value=23 Score=30.61 Aligned_cols=80 Identities=11% Similarity=0.185 Sum_probs=53.1
Q ss_pred CeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883 59 PIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-- 133 (202)
Q Consensus 59 ~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-- 133 (202)
..|+++..+.+| ..+.+.+.+.++++| |++.+...+..+++..++++.+..++.+.||...+... +..+.-
T Consensus 60 ~~i~vi~~~~~~~~~~~~~~gi~~~~~~~g--~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~--~~~~~~l~ 135 (341)
T PRK10703 60 KSIGLLATSSEAPYFAEIIEAVEKNCYQKG--YTLILCNAWNNLEKQRAYLSMLAQKRVDGLLVMCSEYP--EPLLAMLE 135 (341)
T ss_pred CeEEEEeCCCCCchHHHHHHHHHHHHHHCC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCC--HHHHHHHH
Confidence 578988865444 233456667777888 56777778888998888888888888887776654311 122222
Q ss_pred c-cCCcEEEe
Q 028883 134 N-SQILVIRV 142 (202)
Q Consensus 134 ~-T~~PVIgV 142 (202)
. ...|||-+
T Consensus 136 ~~~~iPvV~~ 145 (341)
T PRK10703 136 EYRHIPMVVM 145 (341)
T ss_pred hcCCCCEEEE
Confidence 1 46788765
No 125
>PRK13059 putative lipid kinase; Reviewed
Probab=82.03 E-value=6.6 Score=34.68 Aligned_cols=76 Identities=12% Similarity=0.109 Sum_probs=48.4
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc----CCcEEE
Q 028883 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS----QILVIR 141 (202)
Q Consensus 66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T----~~PVIg 141 (202)
|+..+....+++.+.|++-|+.+++....-+... +.+.++...+.++|| ++|+.+.+--|+.++. ..|+--
T Consensus 13 G~g~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi-~~GGDGTv~evv~gl~~~~~~~~lgv 87 (295)
T PRK13059 13 GENAIISELDKVIRIHQEKGYLVVPYRISLEYDL----KNAFKDIDESYKYIL-IAGGDGTVDNVVNAMKKLNIDLPIGI 87 (295)
T ss_pred cchhHHHHHHHHHHHHHHCCcEEEEEEccCcchH----HHHHHHhhcCCCEEE-EECCccHHHHHHHHHHhcCCCCcEEE
Confidence 5555566778888999999987765444433222 233444455677554 7899999998887774 345444
Q ss_pred ecCCC
Q 028883 142 VPLLS 146 (202)
Q Consensus 142 VP~~~ 146 (202)
+|.-+
T Consensus 88 iP~GT 92 (295)
T PRK13059 88 LPVGT 92 (295)
T ss_pred ECCCC
Confidence 56543
No 126
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=81.88 E-value=14 Score=31.63 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=52.4
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A 133 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~ 133 (202)
+|+++..+.+| ..+.+.+.+.++++|+ ++.+. .....++...++++++.+++.+-||..+.....+...+. -
T Consensus 1 ~I~vi~~~~~~~f~~~i~~gi~~~a~~~g~--~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~ 78 (298)
T cd06302 1 TIAFVPKVTGIPYFNRMEEGAKEAAKELGV--DAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAR 78 (298)
T ss_pred CEEEEEcCCCChHHHHHHHHHHHHHHHhCC--eEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHH
Confidence 36777776666 2344566777788885 55554 455788888889888878788877776543332233322 2
Q ss_pred ccCCcEEEe
Q 028883 134 NSQILVIRV 142 (202)
Q Consensus 134 ~T~~PVIgV 142 (202)
....|||-+
T Consensus 79 ~~~iPvV~v 87 (298)
T cd06302 79 EAGIKVVTH 87 (298)
T ss_pred HCCCeEEEE
Confidence 346788865
No 127
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=81.86 E-value=28 Score=28.75 Aligned_cols=79 Identities=18% Similarity=0.256 Sum_probs=50.9
Q ss_pred EEEEecC---CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMES---DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS---~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|+||... .......+.+.+.++++|+. +-+......+++..+.++.+...+++-+|...+.... +..+. ..-
T Consensus 2 Igvv~~~~~~~~~~~~~~~i~~~a~~~g~~--~~~~~~~~~~~~~~~~i~~l~~~~vdgii~~~~~~~~-~~~~~~~~~~ 78 (269)
T cd06281 2 IGCLVSDITNPLLAQLFSGAEDRLRAAGYS--LLIANSLNDPERELEILRSFEQRRMDGIIIAPGDERD-PELVDALASL 78 (269)
T ss_pred EEEEecCCccccHHHHHHHHHHHHHHcCCE--EEEEeCCCChHHHHHHHHHHHHcCCCEEEEecCCCCc-HHHHHHHHhC
Confidence 5666644 33455666777888888864 5555566788888888888888888877776543222 33322 223
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||-+
T Consensus 79 ~ipvV~i 85 (269)
T cd06281 79 DLPIVLL 85 (269)
T ss_pred CCCEEEE
Confidence 5788766
No 128
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=81.60 E-value=10 Score=26.86 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=45.1
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 136 (202)
Q Consensus 57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~ 136 (202)
++..|-|.+. +.=+.+.++.+.|+++|++|+..-+. ..++ ..++. ...+...
T Consensus 6 ~~~~V~ly~~--~~Cp~C~~ak~~L~~~gi~y~~idi~--~~~~-~~~~~-----------------------~~~g~~~ 57 (79)
T TIGR02190 6 KPESVVVFTK--PGCPFCAKAKATLKEKGYDFEEIPLG--NDAR-GRSLR-----------------------AVTGATT 57 (79)
T ss_pred CCCCEEEEEC--CCCHhHHHHHHHHHHcCCCcEEEECC--CChH-HHHHH-----------------------HHHCCCC
Confidence 3345666554 66799999999999999999875443 2222 12221 1235577
Q ss_pred CcEEEecCCCCCCChhh-HHHhh
Q 028883 137 ILVIRVPLLSEDWSEDD-VINSI 158 (202)
Q Consensus 137 ~PVIgVP~~~~~l~G~D-LlS~v 158 (202)
.|+|-+ .+..++|.| |...|
T Consensus 58 vP~i~i--~g~~igG~~~l~~~l 78 (79)
T TIGR02190 58 VPQVFI--GGKLIGGSDELEAYL 78 (79)
T ss_pred cCeEEE--CCEEEcCHHHHHHHh
Confidence 888853 444567777 66544
No 129
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=81.36 E-value=19 Score=29.00 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=50.7
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 134 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~ 134 (202)
+|++|....++ ....+.+.+.+++.|+ ++.+......+++..++++++..++++.+|........+..++.- .
T Consensus 1 ~ig~i~p~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~~~~~~~~~~~~l~~ 78 (267)
T cd01536 1 KIGLVVPSLNNPFWQAMNKGAEAAAKELGV--ELIVLDAQNDVSKQIQQIEDLIAQGVDGIIISPVDSAALTPALKKANA 78 (267)
T ss_pred CEEEEeccccCHHHHHHHHHHHHHHHhcCc--eEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCCchhHHHHHHHHHH
Confidence 36777754333 2345555666777775 555566666888888888888777888888765443333223322 2
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
...|+|.+
T Consensus 79 ~~ip~V~~ 86 (267)
T cd01536 79 AGIPVVTV 86 (267)
T ss_pred CCCcEEEe
Confidence 45788875
No 130
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=81.36 E-value=32 Score=29.48 Aligned_cols=83 Identities=13% Similarity=0.178 Sum_probs=50.6
Q ss_pred CCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883 57 DAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA- 132 (202)
Q Consensus 57 ~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA- 132 (202)
+...|++++...++. .+.+.+.+.+++.|+ ++.+...+..++...++++.+...+++-||........- ..+.
T Consensus 60 ~~~~Igvv~~~~~~~~~~~l~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~-~~~~~ 136 (328)
T PRK11303 60 RTRSIGLIIPDLENTSYARIAKYLERQARQRGY--QLLIACSDDQPDNEMRCAEHLLQRQVDALIVSTSLPPEH-PFYQR 136 (328)
T ss_pred CCceEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCh-HHHHH
Confidence 346899998654442 233455666677775 555566677788777888888777888777654322111 1222
Q ss_pred -hccCCcEEEe
Q 028883 133 -ANSQILVIRV 142 (202)
Q Consensus 133 -~~T~~PVIgV 142 (202)
.....||+-+
T Consensus 137 l~~~~iPvV~v 147 (328)
T PRK11303 137 LQNDGLPIIAL 147 (328)
T ss_pred HHhcCCCEEEE
Confidence 2245788765
No 131
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=81.23 E-value=3.2 Score=35.73 Aligned_cols=59 Identities=24% Similarity=0.383 Sum_probs=46.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC---------------------CchHHHHHHHHHhhcCceEE
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ---------------------NCKEALSYALSAKERGIKII 117 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR---------------------tp~~l~~~~~~~~~~g~~Vi 117 (202)
-++-+|-|-..|.+..++.++.+..+++. .+.+...|+ +++.+.++.+-+++.|.+++
T Consensus 132 iR~~vIPg~nd~~e~i~~ia~~l~~l~~~-~~~llpyh~~g~~Ky~~lg~~y~~~~~~~~~~~~l~~~~~~~~~~gl~~~ 210 (213)
T PRK10076 132 PRLPLIPGFTLSRENMQQALDVLIPLGIK-QIHLLPFHQYGEPKYRLLGKTWSMKEVPAPSSADVATMREMAERAGFQVT 210 (213)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHcCCc-eEEEecCCccchhHHHHcCCcCccCCCCCcCHHHHHHHHHHHHHcCCeEE
Confidence 36788888888889999999999999876 788888887 33455566666777788887
Q ss_pred E
Q 028883 118 I 118 (202)
Q Consensus 118 I 118 (202)
|
T Consensus 211 i 211 (213)
T PRK10076 211 V 211 (213)
T ss_pred e
Confidence 6
No 132
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=81.20 E-value=35 Score=30.99 Aligned_cols=74 Identities=20% Similarity=0.251 Sum_probs=52.6
Q ss_pred CCCeEEEEecCCC-----CHH----HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceE-EEEecCCcCc
Q 028883 57 DAPIVGIIMESDL-----DLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKI-IIVGDGVEAH 126 (202)
Q Consensus 57 ~~~~V~IimGS~S-----D~~----v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~V-iIa~AG~aa~ 126 (202)
..++++|+.|++| |.. .+++....++..| ..+.|+.-.|||+++.+.+++.-+....+ |.-..| .|=
T Consensus 145 ~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~-~nP 221 (311)
T PF06258_consen 145 PRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG--GSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTG-ENP 221 (311)
T ss_pred CCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC--CeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCC-CCc
Confidence 4589999999988 333 4456666666777 47999999999999999988876544455 443333 666
Q ss_pred hhhhhhh
Q 028883 127 LSGVAAA 133 (202)
Q Consensus 127 LpgvvA~ 133 (202)
..++++.
T Consensus 222 y~~~La~ 228 (311)
T PF06258_consen 222 YLGFLAA 228 (311)
T ss_pred HHHHHHh
Confidence 6676643
No 133
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=80.94 E-value=3.8 Score=36.16 Aligned_cols=82 Identities=11% Similarity=0.014 Sum_probs=50.9
Q ss_pred CCeEEEEecCCCC-----HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCce-EEEEecCC---cCchh
Q 028883 58 APIVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGV---EAHLS 128 (202)
Q Consensus 58 ~~~V~IimGS~SD-----~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~-ViIa~AG~---aa~Lp 128 (202)
+.+|+|++|+.|- +.-++.+.+.|++.|.... .+-.+. .+ +.........+ ||++.-|. .+.++
T Consensus 3 ~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~--~~~~~~-~~----~~~~l~~~~~d~vf~~lhG~~ge~~~i~ 75 (296)
T PRK14569 3 NEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAV--GVDASG-KE----LVAKLLELKPDKCFVALHGEDGENGRVS 75 (296)
T ss_pred CcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEE--EEcCCc-hh----HHHHhhccCCCEEEEeCCCCCCCChHHH
Confidence 3589999999998 4567788888888887643 233332 11 12222233454 66766544 45577
Q ss_pred hhhhhccCCcEEEecCCCC
Q 028883 129 GVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 129 gvvA~~T~~PVIgVP~~~~ 147 (202)
+++..+ .+|++|+.+.+.
T Consensus 76 ~~le~~-gip~~Gs~~~a~ 93 (296)
T PRK14569 76 ALLEML-EIKHTSSSMKSS 93 (296)
T ss_pred HHHHHc-CCCeeCCCHHHH
Confidence 766444 688888776543
No 134
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=80.82 E-value=11 Score=34.03 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=58.6
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc--cCCcEEE-e
Q 028883 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIR-V 142 (202)
Q Consensus 66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~--T~~PVIg-V 142 (202)
|-..-....+++.+.|++.|..+++++.... ....++++++...+++.||+ +|+.+-+.-|+.++ +..|.+| +
T Consensus 14 G~~~~~~~~~~~~~~l~~~g~~~~~~~t~~~---g~a~~~a~~a~~~~~D~via-~GGDGTv~evingl~~~~~~~Lgil 89 (301)
T COG1597 14 GKGKAKKLLREVEELLEEAGHELSVRVTEEA---GDAIEIAREAAVEGYDTVIA-AGGDGTVNEVANGLAGTDDPPLGIL 89 (301)
T ss_pred cccchhhHHHHHHHHHHhcCCeEEEEEeecC---ccHHHHHHHHHhcCCCEEEE-ecCcchHHHHHHHHhcCCCCceEEe
Confidence 3344566788999999999999999888765 77888999988888888776 58899999898887 5555344 4
Q ss_pred cCC
Q 028883 143 PLL 145 (202)
Q Consensus 143 P~~ 145 (202)
|.-
T Consensus 90 P~G 92 (301)
T COG1597 90 PGG 92 (301)
T ss_pred cCC
Confidence 443
No 135
>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT. Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.
Probab=80.75 E-value=17 Score=31.01 Aligned_cols=81 Identities=21% Similarity=0.234 Sum_probs=48.4
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEcc--CCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-h
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-A 133 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~Sa--HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-~ 133 (202)
+++++.-..+| ....+.+.+.+++.|+ ++.+.+. +..+++..++++.+..++++.||..+.....+...+. .
T Consensus 1 ~igvvvp~~~n~f~~~~~~gi~~~a~~~g~--~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~ 78 (295)
T TIGR02955 1 KLCALYPHLKDSYWLSINYGMVEQAKHLGV--ELKVLEAGGYPNLDKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL 78 (295)
T ss_pred CeeEEecCCCcHHHHHHHHHHHHHHHHhCC--EEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH
Confidence 36677765555 2333455666777876 4444544 3467777788888888889877776543333223332 2
Q ss_pred ccCCcEEEe
Q 028883 134 NSQILVIRV 142 (202)
Q Consensus 134 ~T~~PVIgV 142 (202)
....||+-+
T Consensus 79 ~~~iPvV~~ 87 (295)
T TIGR02955 79 TKSIPVFAL 87 (295)
T ss_pred hcCCCEEEE
Confidence 236788753
No 136
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=80.24 E-value=39 Score=29.37 Aligned_cols=64 Identities=11% Similarity=0.040 Sum_probs=44.7
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
+...|+++..+-+| ....+.+.+.+++.|. .+-+...+..+++..++++.+..++++-+|....
T Consensus 58 ~~~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 124 (343)
T PRK10727 58 STETVGLVVGDVSDPFFGAMVKAVEQVAYHTGN--FLLIGNGYHNEQKERQAIEQLIRHRCAALVVHAK 124 (343)
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 34679999876544 2345566677778885 5666667777887778888887788887776543
No 137
>PRK13057 putative lipid kinase; Reviewed
Probab=80.13 E-value=11 Score=33.03 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc--cCCcEEEecCCC
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN--SQILVIRVPLLS 146 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~--T~~PVIgVP~~~ 146 (202)
...+++.+.|++.|+.+++... +.+....+++++. .++.+.|| ++|+.+.+--++.++ +..|+--+|.-+
T Consensus 13 ~~~~~i~~~l~~~g~~~~~~~t---~~~~~a~~~~~~~-~~~~d~ii-v~GGDGTv~~v~~~l~~~~~~lgiiP~GT 84 (287)
T PRK13057 13 AALAAARAALEAAGLELVEPPA---EDPDDLSEVIEAY-ADGVDLVI-VGGGDGTLNAAAPALVETGLPLGILPLGT 84 (287)
T ss_pred hhHHHHHHHHHHcCCeEEEEec---CCHHHHHHHHHHH-HcCCCEEE-EECchHHHHHHHHHHhcCCCcEEEECCCC
Confidence 3567888999999998766544 4566667777653 45567554 679999999888775 455655566544
No 138
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=79.98 E-value=31 Score=28.06 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=51.8
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh-hhccC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA-AANSQ 136 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv-A~~T~ 136 (202)
|+++....+| ..+.+.+.+.++++|+ .+.+......+++..++++++..++++.+|..+.....+..+- +-.-.
T Consensus 2 I~vi~~~~~~~~~~~~~~g~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ 79 (268)
T cd06289 2 IGLVINDLTNPFFAELAAGLEEVLEEAGY--TVFLANSGEDVERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESG 79 (268)
T ss_pred EEEEecCCCcchHHHHHHHHHHHHHHcCC--eEEEecCCCChHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcC
Confidence 5666654333 3344566677888886 4555566667888888888888888887777765444444221 22346
Q ss_pred CcEEEe
Q 028883 137 ILVIRV 142 (202)
Q Consensus 137 ~PVIgV 142 (202)
.|||.+
T Consensus 80 ipvV~~ 85 (268)
T cd06289 80 IPVVLV 85 (268)
T ss_pred CCEEEE
Confidence 788876
No 139
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.84 E-value=19 Score=30.32 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=52.5
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhh-hc
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAA-AN 134 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA-~~ 134 (202)
+|+++..+.++ ..+.+.+.+.++++| |++-+......+++..++++.+..++.+.||........ -+.+-. ..
T Consensus 2 ~ig~i~~~~~~~~~~~~~~gi~~~a~~~g--y~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~ 79 (280)
T cd06315 2 NIIFVASDLKNGGILGVGEGVREAAKAIG--WNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGVDAAELQAELELAQK 79 (280)
T ss_pred eEEEEecccCCcHHHHHHHHHHHHHHHcC--cEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 57888776554 234455667777787 566666666788888889999888888877776433222 233222 23
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
-..|||-+
T Consensus 80 ~~iPvV~~ 87 (280)
T cd06315 80 AGIPVVGW 87 (280)
T ss_pred CCCCEEEe
Confidence 46788765
No 140
>TIGR01205 D_ala_D_alaTIGR D-alanine--D-alanine ligase. but a number of antibiotic resistance proteins score above the trusted cutoff of this model.
Probab=79.71 E-value=7 Score=34.00 Aligned_cols=84 Identities=15% Similarity=0.163 Sum_probs=49.6
Q ss_pred eEEEEecCCCCHH-----HHHHHHHHHHHhCCCeEEEEEccCCC----chHHHHHHHH--HhhcCceEEEEec----CCc
Q 028883 60 IVGIIMESDLDLP-----VMNDAARTLSDFGVPYEIKILPPHQN----CKEALSYALS--AKERGIKIIIVGD----GVE 124 (202)
Q Consensus 60 ~V~IimGS~SD~~-----v~~~a~~~L~~~gi~~ev~V~SaHRt----p~~l~~~~~~--~~~~g~~ViIa~A----G~a 124 (202)
+|+|++|+.|+.- .+..+.+.|++.|... .++...+. ...+.+.+.. .....+++++-.. |..
T Consensus 1 ~~~~~~gg~s~e~~~s~~s~~~i~~al~~~g~~v--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~g~~~~~ 78 (315)
T TIGR01205 1 RVAVLFGGKSAEHEISLVSAAAVLKALRDLGYDV--YPVDIDKMGSWTYKDLPQLILELGALLEGIDVVFPVLHGRYGED 78 (315)
T ss_pred CEEEEeCCCCCCeeeeHHHHHHHHHHHhhcCCEE--EEEeecCCccccccchHHHHhhccccCCCCCEEEEecCCCCCCC
Confidence 5899999999754 5677888999988753 33333331 1122222211 1113467777654 335
Q ss_pred CchhhhhhhccCCcEEEecCCC
Q 028883 125 AHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 125 a~LpgvvA~~T~~PVIgVP~~~ 146 (202)
+++++++.. ..+|++|.+...
T Consensus 79 ~~~~~~le~-~gip~~g~~~~~ 99 (315)
T TIGR01205 79 GTIQGLLEL-MGIPYTGSGVLA 99 (315)
T ss_pred cHHHHHHHH-cCCCccCCCHHH
Confidence 677776653 468888865443
No 141
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=79.68 E-value=12 Score=26.25 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=42.8
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
.|.|+.-+..+.+.+.+.+..|+.-|+.+++-.. .+.+.+-.+++ ++.|+..+|.+..
T Consensus 3 ~v~ii~~~~~~~~~a~~~~~~Lr~~g~~v~~d~~--~~~~~~~~~~a---~~~g~~~~iiig~ 60 (91)
T cd00860 3 QVVVIPVTDEHLDYAKEVAKKLSDAGIRVEVDLR--NEKLGKKIREA---QLQKIPYILVVGD 60 (91)
T ss_pred EEEEEeeCchHHHHHHHHHHHHHHCCCEEEEECC--CCCHHHHHHHH---HHcCCCEEEEECc
Confidence 5778887888899999999999999998777542 46666666554 4678876666553
No 142
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=79.62 E-value=12 Score=32.40 Aligned_cols=79 Identities=15% Similarity=0.256 Sum_probs=51.6
Q ss_pred EEEEecCCCCHHHHHHH----HHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883 61 VGIIMESDLDLPVMNDA----ARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 134 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a----~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~ 134 (202)
|++++.+ .+-+...+. .+.++++| |++.+.+..-.+++..++++.+..++++.||........+...+.- .
T Consensus 1 ig~~~~~-~~~~~~~~~~~~i~~~a~~~g--~~v~~~~~~~~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~ 77 (302)
T TIGR02634 1 IGVSIDD-LRLERWQKDRDIFVAAAESLG--AKVFVQSANGNEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKD 77 (302)
T ss_pred CeeecCc-cchhhHHHHHHHHHHHHHhcC--CEEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHH
Confidence 3556654 355555444 44555666 5777788888888888999999888899888765444434444432 2
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
...|||.+
T Consensus 78 ~~iPvV~~ 85 (302)
T TIGR02634 78 EGIKVVAY 85 (302)
T ss_pred CCCeEEEe
Confidence 45688876
No 143
>PRK10014 DNA-binding transcriptional repressor MalI; Provisional
Probab=79.57 E-value=40 Score=29.08 Aligned_cols=82 Identities=10% Similarity=0.167 Sum_probs=53.7
Q ss_pred CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--
Q 028883 58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-- 132 (202)
Q Consensus 58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-- 132 (202)
...|+++..+.++ ..+.+.+.+.+++.| |.+.+......++...++++.+...+++.||....... ....+.
T Consensus 64 ~~~Igvv~~~~~~~~~~~i~~gi~~~a~~~g--~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~~l 140 (342)
T PRK10014 64 SGVIGLIVRDLSAPFYAELTAGLTEALEAQG--RMVFLLQGGKDGEQLAQRFSTLLNQGVDGVVIAGAAGS-SDDLREMA 140 (342)
T ss_pred CCEEEEEeCCCccchHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC-cHHHHHHH
Confidence 3579999876444 234455667777787 46666667778888888888888888887777654332 222322
Q ss_pred hccCCcEEEe
Q 028883 133 ANSQILVIRV 142 (202)
Q Consensus 133 ~~T~~PVIgV 142 (202)
.....|||-+
T Consensus 141 ~~~~iPvV~~ 150 (342)
T PRK10014 141 EEKGIPVVFA 150 (342)
T ss_pred hhcCCCEEEE
Confidence 2345788876
No 144
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=79.50 E-value=5.9 Score=30.89 Aligned_cols=54 Identities=17% Similarity=0.293 Sum_probs=41.6
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+ .-+.+-..+.++++||.|++...+..-+.+++.+.++++.++
T Consensus 31 ~Laii~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~D 85 (117)
T PF00763_consen 31 KLAIILVGDDPASISYVRSKQKAAEKLGIEFELIELPEDISEEELLELIEKLNED 85 (117)
T ss_dssp EEEEEEES--HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSSHHHHHHHHHHHHH-
T ss_pred EEEEEecCCChhHHHHHHHHHHHHHHcCCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 467777786655 556777888999999999999999999999999999988664
No 145
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=79.49 E-value=7.6 Score=37.25 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=75.6
Q ss_pred CeEEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEE-EccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh----hhh-
Q 028883 59 PIVGIIME-SDLDLPVMNDAARTLSDFGVPYEIKI-LPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVA- 131 (202)
Q Consensus 59 ~~V~IimG-S~SD~~v~~~a~~~L~~~gi~~ev~V-~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp----gvv- 131 (202)
.++.+++- .-+-++-.+.+.+.|++-||+|++.= .-.--|-..+.+-++-+++..++.+|++.|+++|=- ...
T Consensus 71 Kk~llvTDkni~~~~~~~~a~~~L~~~~I~~~vyD~v~~ePtv~s~~~alefak~~~fDs~vaiGGGSa~DtaKaaaL~A 150 (465)
T KOG3857|consen 71 KKTLLVTDKNIAKLGLVKVAQDSLEENGINVEVYDKVQPEPTVGSVTAALEFAKKKNFDSFVAIGGGSAHDTAKAAALLA 150 (465)
T ss_pred cceEEeeCCChhhcccHHHHHHHHHHcCCceEEecCccCCCchhhHHHHHHHHHhcccceEEEEcCcchhhhHHHHHHhh
Confidence 35666653 34566778899999999999988620 011222233444444455677899999999998732 222
Q ss_pred --------------------hhccCCcEEEecCCCCC-----------------------------CChhhHHHhhcCCC
Q 028883 132 --------------------AANSQILVIRVPLLSED-----------------------------WSEDDVINSIRMPS 162 (202)
Q Consensus 132 --------------------A~~T~~PVIgVP~~~~~-----------------------------l~G~DLlS~vqMP~ 162 (202)
.+.-.+|.|++|+..+. +.=.|=+.|+.||+
T Consensus 151 sn~~~eflDyvg~pigk~~~~s~p~lPLiAipTTaGTgSEtT~~AI~d~e~~k~K~gI~~k~ikP~lav~DPl~~~~~P~ 230 (465)
T KOG3857|consen 151 SNGEGEFLDYVGPPIGKVKQSSKPLLPLIAIPTTAGTGSETTRFAIIDYEELKIKMGIIDKNIKPTLAVNDPLTMLGLPP 230 (465)
T ss_pred cCCCccchhccCCcccccccccccccceEecccCCCccccceeeEEecchhhheeeeeecccccceeeecChHHhccCCh
Confidence 23446899999997531 11134566777777
Q ss_pred CCeeeEEecCChhhHHHHHHHHH
Q 028883 163 HVQVASVPRNNAKNAALYAVKVL 185 (202)
Q Consensus 163 GvpVatV~I~n~~NAAl~Aa~IL 185 (202)
-+ .+..|+-+=+.|.+-.
T Consensus 231 ~v-----~a~tGfDvlcHalEsy 248 (465)
T KOG3857|consen 231 RV-----TAATGFDVLCHALESY 248 (465)
T ss_pred HH-----hhhcchHHHHHHHHHH
Confidence 43 2356666666665543
No 146
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=79.38 E-value=20 Score=29.38 Aligned_cols=81 Identities=15% Similarity=0.155 Sum_probs=51.1
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T 135 (202)
|+|++=+.+| ..+.+.+.+.+++.|+. +.+......+++-.++++++..++++.+|...-........+.- ..
T Consensus 2 i~~~~~~~~~~~~~~~~~~i~~~~~~~g~~--~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ 79 (267)
T cd06322 2 IGASLLTQQHPFYIELANAMKEEAKKQKVN--LIVSIANQDLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKA 79 (267)
T ss_pred eeEeecCcccHHHHHHHHHHHHHHHhcCCE--EEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHC
Confidence 6777766555 23446666777788864 44445556788888888888888888777754333323333322 24
Q ss_pred CCcEEEec
Q 028883 136 QILVIRVP 143 (202)
Q Consensus 136 ~~PVIgVP 143 (202)
..|||.+-
T Consensus 80 ~ipvV~~~ 87 (267)
T cd06322 80 GIPVITVD 87 (267)
T ss_pred CCCEEEEc
Confidence 57898874
No 147
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=79.29 E-value=6 Score=35.75 Aligned_cols=82 Identities=18% Similarity=0.136 Sum_probs=50.6
Q ss_pred CeEEEEe--cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc--
Q 028883 59 PIVGIIM--ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN-- 134 (202)
Q Consensus 59 ~~V~Iim--GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~-- 134 (202)
.+|++|. |++...+.++++.+.|++.|+.+.+.....+..+ ...+. ....+.++++|++ |+.+.+-.++-..
T Consensus 4 kkv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~--~~~~~-~~~~~~~d~vi~~-GGDGT~l~~~~~~~~ 79 (305)
T PRK02645 4 KQVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNP--YPVFL-ASASELIDLAIVL-GGDGTVLAAARHLAP 79 (305)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhcc--ccchh-hccccCcCEEEEE-CCcHHHHHHHHHhcc
Confidence 4677774 4444447788888889999987666544333222 11221 1222346777665 7777776666543
Q ss_pred cCCcEEEecC
Q 028883 135 SQILVIRVPL 144 (202)
Q Consensus 135 T~~PVIgVP~ 144 (202)
...||+|+.+
T Consensus 80 ~~~pv~gin~ 89 (305)
T PRK02645 80 HDIPILSVNV 89 (305)
T ss_pred CCCCEEEEec
Confidence 5889999988
No 148
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=79.11 E-value=15 Score=35.35 Aligned_cols=103 Identities=9% Similarity=-0.094 Sum_probs=67.0
Q ss_pred CceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEE----ecCCCCHHHHH-HHHHHHHHhCCCeEEE
Q 028883 17 GTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGII----MESDLDLPVMN-DAARTLSDFGVPYEIK 91 (202)
Q Consensus 17 ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Ii----mGS~SD~~v~~-~a~~~L~~~gi~~ev~ 91 (202)
.-.++-..|.+.|+.-.+.+. +.++.. ..+.++.|| +|..+.....+ ++...|++.|+.+++.
T Consensus 82 ~~~~~~~~~~~~~~~w~~~~~---------~~~~~~---~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~gi~~~v~ 149 (481)
T PLN02958 82 KDFVFEPLSDESRRLWCQKLR---------DYLDSL---GRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDADIQLTIQ 149 (481)
T ss_pred eeEEEeCCCHHHHHHHHHHHH---------HHHhhc---cCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcCCeEEEE
Confidence 345666667777766665554 222111 122356665 46666666654 5777999999998877
Q ss_pred EEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 92 ILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 92 V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
+.- .+....++++++...+++.||+ .|+.+-|--++-|+-
T Consensus 150 ~T~---~~ghA~~la~~~~~~~~D~VV~-vGGDGTlnEVvNGL~ 189 (481)
T PLN02958 150 ETK---YQLHAKEVVRTMDLSKYDGIVC-VSGDGILVEVVNGLL 189 (481)
T ss_pred ecc---CccHHHHHHHHhhhcCCCEEEE-EcCCCHHHHHHHHHh
Confidence 654 3366677887776667786664 688888888887774
No 149
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=78.95 E-value=34 Score=27.99 Aligned_cols=78 Identities=21% Similarity=0.201 Sum_probs=49.5
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-ccC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQ 136 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-~T~ 136 (202)
|+|+.-+.+| ....+.+.+.++++|+ .+-+...+-.+++..++++.+..++++-+|........ ..+.. ...
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~--~~~~~~~~~ 77 (265)
T cd06290 2 IGVLTQDFASPFYGRILKGMERGLNGSGY--SPIIATGHWNQSRELEALELLKSRRVDALILLGGDLPE--EEILALAEE 77 (265)
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCh--HHHHHHhcC
Confidence 6666654343 2344566677888884 55666667888888899999988888877766543111 11211 235
Q ss_pred CcEEEe
Q 028883 137 ILVIRV 142 (202)
Q Consensus 137 ~PVIgV 142 (202)
.|||-+
T Consensus 78 iPvV~i 83 (265)
T cd06290 78 IPVLAV 83 (265)
T ss_pred CCEEEE
Confidence 788765
No 150
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=78.87 E-value=36 Score=28.20 Aligned_cols=105 Identities=11% Similarity=-0.097 Sum_probs=66.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHH----HhCCCeEEEE--------EccC--CCchHHHHHHHHHhhcCceEEEEec-CC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLS----DFGVPYEIKI--------LPPH--QNCKEALSYALSAKERGIKIIIVGD-GV 123 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~----~~gi~~ev~V--------~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~A-G~ 123 (202)
.+|.+|+||.+.-.+-...++.+. ..+......+ --.+ ..|+.+.++.+.... ++.+|.+. =-
T Consensus 1 ~kil~i~GS~r~~S~~~~la~~~~~~l~~~~~~~~~~~~~~lP~~~~d~~~~~~p~~v~~~~~~i~~--aD~li~~tPeY 78 (184)
T COG0431 1 MKILIISGSLRRGSFNRALAEAAAKLLPAGGEVEVEFDDLDLPLYNEDLEADGLPPAVQALREAIAA--ADGLIIATPEY 78 (184)
T ss_pred CeEEEEeccCcccchHHHHHHHHHHhhcccCceEEEecccccCCCCcchhhccCCHHHHHHHHHHHh--CCEEEEECCcc
Confidence 379999999999887766665554 3332211110 1133 588889888887655 66555554 34
Q ss_pred cCchhhhh---------hhccCCcEEEecCCCCCCChh------h-HHHhhcC---CCCCe
Q 028883 124 EAHLSGVA---------AANSQILVIRVPLLSEDWSED------D-VINSIRM---PSHVQ 165 (202)
Q Consensus 124 aa~Lpgvv---------A~~T~~PVIgVP~~~~~l~G~------D-LlS~vqM---P~Gvp 165 (202)
.++.||++ ..+..+||.-+=.+++..+|+ - +++.++| |.+++
T Consensus 79 n~s~pg~lKnaiD~l~~~~~~~Kpv~~~~~s~g~~~~~~a~~~Lr~vl~~~~~~~~~~~v~ 139 (184)
T COG0431 79 NGSYPGALKNAIDWLSREALGGKPVLLLGTSGGGAGGLRAQNQLRPVLSFLGARVIPAGVF 139 (184)
T ss_pred CCCCCHHHHHHHHhCCHhHhCCCcEEEEecCCCchhHHHHHHHHHHHHHhcCceecccchh
Confidence 66777765 246688977777777665553 3 6666665 55533
No 151
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=78.46 E-value=17 Score=31.15 Aligned_cols=77 Identities=13% Similarity=0.173 Sum_probs=51.2
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC-------------CchHHHHHHHHHhhcCceEEEEecCC
Q 028883 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ-------------NCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR-------------tp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
..+.|.|.+|+...- +..+.|+++. .+.+.|.+.+. +...+.+++. . ++++|+-+|-
T Consensus 191 ~~~~iLv~~gg~~~~----~~~~~l~~~~-~~~~~v~g~~~~~~~~~ni~~~~~~~~~~~~~m~---~--ad~vIs~~G~ 260 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG----DLIEALKALP-DYQFIVFGPNAADPRPGNIHVRPFSTPDFAELMA---A--ADLVISKGGY 260 (318)
T ss_pred CCCEEEEEeCCCcHH----HHHHHHHhCC-CCeEEEEcCCcccccCCCEEEeecChHHHHHHHH---h--CCEEEECCCH
Confidence 446788888877555 6667777766 56777776665 2244555543 2 7999988776
Q ss_pred cCchhhhhhhccCCcEEEecCCC
Q 028883 124 EAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 124 aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
+.- +=+....+|+|-+|..+
T Consensus 261 ~t~---~Ea~~~g~P~l~ip~~~ 280 (318)
T PF13528_consen 261 TTI---SEALALGKPALVIPRPG 280 (318)
T ss_pred HHH---HHHHHcCCCEEEEeCCC
Confidence 532 33345788999999975
No 152
>PRK12361 hypothetical protein; Provisional
Probab=78.29 E-value=9.6 Score=36.69 Aligned_cols=77 Identities=21% Similarity=0.233 Sum_probs=51.8
Q ss_pred cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc--CCcEEEec
Q 028883 66 ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS--QILVIRVP 143 (202)
Q Consensus 66 GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T--~~PVIgVP 143 (202)
|+.......+++.+.|++. +++++..+.. .....++++++.+++.++|| ++|+.+.|..|+.++. ..|+--+|
T Consensus 254 G~g~~~~~~~~i~~~L~~~-~~~~v~~t~~---~~~a~~la~~~~~~~~d~Vi-v~GGDGTl~ev~~~l~~~~~~lgiiP 328 (547)
T PRK12361 254 GGGKWQEYGEQIQRELKAY-FDLTVKLTTP---EISAEALAKQARKAGADIVI-ACGGDGTVTEVASELVNTDITLGIIP 328 (547)
T ss_pred CCCcHHHHHHHHHHHHhcC-CceEEEECCC---CccHHHHHHHHHhcCCCEEE-EECCCcHHHHHHHHHhcCCCCEEEec
Confidence 5555667888898889874 5555554432 34467777777667777765 5799999999998874 44444455
Q ss_pred CCCC
Q 028883 144 LLSE 147 (202)
Q Consensus 144 ~~~~ 147 (202)
.-++
T Consensus 329 ~GTg 332 (547)
T PRK12361 329 LGTA 332 (547)
T ss_pred CCch
Confidence 5443
No 153
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=77.67 E-value=48 Score=28.95 Aligned_cols=98 Identities=11% Similarity=0.034 Sum_probs=55.3
Q ss_pred ccccccCCCCCCCCCCeEEEEecCCCCHHHHHH----HHHHHHHhCCCeEEEEEccCCCc---------hHHHHHHHHHh
Q 028883 44 TVFEEENPNGDSTDAPIVGIIMESDLDLPVMND----AARTLSDFGVPYEIKILPPHQNC---------KEALSYALSAK 110 (202)
Q Consensus 44 ~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~----a~~~L~~~gi~~ev~V~SaHRtp---------~~l~~~~~~~~ 110 (202)
++|.............+|.+|.||.+--..-.+ +.+.+..-|+ ++.+......| ..+.++.+..+
T Consensus 12 ~~~~~~~~~~~~~~~~kI~~I~GSlR~~S~n~~la~~~~~~~~~~g~--~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~ 89 (219)
T TIGR02690 12 PALRPLFSATHKPHIPRILLLYGSLRERSYSRLLAEEAARLLGCEGR--ETRIFDPPGLPLPDAAHADHPKVRELRQLSE 89 (219)
T ss_pred cchhhccCCCCCCCCCEEEEEECCCCCcchHHHHHHHHHHHHhhcCC--EEEEeCcccCCCCCcCcccCHHHHHHHHHHH
Confidence 345555455566666899999999987655554 4444443344 55555443322 25555555443
Q ss_pred hcCce-EEEEecCCcCchhhhhh--------------hccCCcEEEecCC
Q 028883 111 ERGIK-IIIVGDGVEAHLSGVAA--------------ANSQILVIRVPLL 145 (202)
Q Consensus 111 ~~g~~-ViIa~AG~aa~LpgvvA--------------~~T~~PVIgVP~~ 145 (202)
. ++ +||+--.=...+||++= .++.+||--|-.+
T Consensus 90 ~--ADgvii~TPEYn~sipg~LKNaiDwls~~~~~~~~~~~KpvaivgaS 137 (219)
T TIGR02690 90 W--SEGQVWCSPERHGAITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQVS 137 (219)
T ss_pred h--CCEEEEeCCccccCcCHHHHHHHHhcccCcccccccCCCcEEEEEeC
Confidence 3 44 55555555666666541 3456777655444
No 154
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=77.24 E-value=30 Score=28.36 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=49.2
Q ss_pred EEEEecCC-CC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hc
Q 028883 61 VGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--AN 134 (202)
Q Consensus 61 V~IimGS~-SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~ 134 (202)
|++|+-.. ++ ....+.+.+.++++|+ ++.+......+++..++++.+..++.+.||..+.-.......+. -.
T Consensus 2 i~vi~p~~~~~~~~~~~~~g~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~ 79 (275)
T cd06317 2 IGYTQNNVGSHSYQTTYNKAFQAAAEEDGV--EVIVLDANGDVARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQ 79 (275)
T ss_pred eEEEecccCCCHHHHHHHHHHHHHHHhcCC--EEEEEcCCcCHHHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHH
Confidence 56666443 33 2333466666778885 55566667788888888888878888877776544322222322 23
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
...|||.+
T Consensus 80 ~~iPvV~~ 87 (275)
T cd06317 80 AGIPVVIT 87 (275)
T ss_pred CCCcEEEe
Confidence 56788765
No 155
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=77.04 E-value=10 Score=27.51 Aligned_cols=41 Identities=24% Similarity=0.223 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH
Q 028883 67 SDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108 (202)
Q Consensus 67 S~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~ 108 (202)
+.++=|++.++.+.|++.|++|+......|.. ++..++++.
T Consensus 7 t~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~-~~~~~~~~~ 47 (80)
T COG0695 7 TKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEP-EEAREMVKR 47 (80)
T ss_pred ECCCCchHHHHHHHHHHcCCCcEEEEecCCcH-HHHHHHHHH
Confidence 45568999999999999999999988887766 666666653
No 156
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=76.72 E-value=15 Score=32.13 Aligned_cols=83 Identities=12% Similarity=0.042 Sum_probs=41.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE-EEc-cCCCchHHHHHHHH------------Hhh--cCceEEEEecC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK-ILP-PHQNCKEALSYALS------------AKE--RGIKIIIVGDG 122 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~-V~S-aHRtp~~l~~~~~~------------~~~--~g~~ViIa~AG 122 (202)
+.|.|.+|+.--.....+..+.|.++.-++++. |++ .....+++.++.+. +.+ ..++++|+.+|
T Consensus 171 ~~iLi~~GG~d~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm~~aDl~Is~~G 250 (279)
T TIGR03590 171 RRVLVSFGGADPDNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELMNEADLAIGAAG 250 (279)
T ss_pred CeEEEEeCCcCCcCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHHHHCCEEEECCc
Confidence 568777775444355677778887755444433 333 22333333333221 000 12577777544
Q ss_pred CcCchhhhhhhccCCcEEEecCC
Q 028883 123 VEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 123 ~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
. .+ .=+....+|+|.+|+.
T Consensus 251 ~--T~--~E~~a~g~P~i~i~~~ 269 (279)
T TIGR03590 251 S--TS--WERCCLGLPSLAICLA 269 (279)
T ss_pred h--HH--HHHHHcCCCEEEEEec
Confidence 1 12 2233455777777764
No 157
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=76.71 E-value=10 Score=26.38 Aligned_cols=65 Identities=14% Similarity=-0.013 Sum_probs=44.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCC
Q 028883 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 68 ~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~ 147 (202)
.+.=|.+.+|...|++.|++|+..=+. ..++...++.+ ..+....|+|- +.+.
T Consensus 6 ~~~Cp~C~~a~~~L~~~~i~~~~~di~--~~~~~~~~~~~-----------------------~~g~~~vP~i~--i~g~ 58 (79)
T TIGR02181 6 KPYCPYCTRAKALLSSKGVTFTEIRVD--GDPALRDEMMQ-----------------------RSGRRTVPQIF--IGDV 58 (79)
T ss_pred cCCChhHHHHHHHHHHcCCCcEEEEec--CCHHHHHHHHH-----------------------HhCCCCcCEEE--ECCE
Confidence 456689999999999999998876443 44555555432 12356777774 3455
Q ss_pred CCChhh-HHHhhc
Q 028883 148 DWSEDD-VINSIR 159 (202)
Q Consensus 148 ~l~G~D-LlS~vq 159 (202)
.++|.+ |.++.+
T Consensus 59 ~igg~~~~~~~~~ 71 (79)
T TIGR02181 59 HVGGCDDLYALDR 71 (79)
T ss_pred EEcChHHHHHHHH
Confidence 678888 887765
No 158
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=75.54 E-value=42 Score=27.25 Aligned_cols=79 Identities=9% Similarity=0.101 Sum_probs=48.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
|+++.-..+| ....+.+.+.++++|+. +.+...-..++...++++.+..++++.+|......... -.-+-....
T Consensus 2 i~~v~~~~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~~~~~~~~i 78 (267)
T cd06284 2 ILVLVPDIANPFFSEILKGIEDEAREAGYG--VLLGDTRSDPEREQEYLDLLRRKQADGIILLDGSLPPT-ALTALAKLP 78 (267)
T ss_pred EEEEECCCCCccHHHHHHHHHHHHHHcCCe--EEEecCCCChHHHHHHHHHHHHcCCCEEEEecCCCCHH-HHHHHhcCC
Confidence 4555544333 34556777788888864 44455556677777888888888888777655432211 111223367
Q ss_pred cEEEe
Q 028883 138 LVIRV 142 (202)
Q Consensus 138 PVIgV 142 (202)
|||.+
T Consensus 79 pvv~~ 83 (267)
T cd06284 79 PIVQA 83 (267)
T ss_pred CEEEE
Confidence 99876
No 159
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=75.33 E-value=52 Score=28.19 Aligned_cols=82 Identities=13% Similarity=0.170 Sum_probs=50.8
Q ss_pred CCCeEEEEecCCCCHHHH----HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhh
Q 028883 57 DAPIVGIIMESDLDLPVM----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVA 131 (202)
Q Consensus 57 ~~~~V~IimGS~SD~~v~----~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~Lpgvv 131 (202)
+...|++++...++ ++. +.+.+.+++.| |++.+...+..+++..++++.+..++++-||..... ...+--.+
T Consensus 58 ~~~~Igvv~~~~~~-~f~~~l~~~i~~~~~~~g--~~~~i~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l 134 (329)
T TIGR01481 58 RTTTVGVIIPDISN-IYYAELARGIEDIATMYK--YNIILSNSDEDPEKEVQVLNTLLSKQVDGIIFMGGTITEKLREEF 134 (329)
T ss_pred CCCEEEEEeCCCCc-hhHHHHHHHHHHHHHHcC--CEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHH
Confidence 34689999976555 333 34455566666 567777777888888888887777788766654321 21121122
Q ss_pred hhccCCcEEEe
Q 028883 132 AANSQILVIRV 142 (202)
Q Consensus 132 A~~T~~PVIgV 142 (202)
.....||+-+
T Consensus 135 -~~~~iPvV~~ 144 (329)
T TIGR01481 135 -SRSPVPVVLA 144 (329)
T ss_pred -HhcCCCEEEE
Confidence 2346788865
No 160
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.31 E-value=20 Score=29.73 Aligned_cols=81 Identities=19% Similarity=0.125 Sum_probs=50.2
Q ss_pred eEEEEecCC-CCH---HHHHHHHHHHHHhCCCeEEEEEccCC-CchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883 60 IVGIIMESD-LDL---PVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134 (202)
Q Consensus 60 ~V~IimGS~-SD~---~v~~~a~~~L~~~gi~~ev~V~SaHR-tp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 134 (202)
+|++|+.+. +|- ...+.+.+.+++.|+.+ .+...-. .++...+.++++..++++.+|........+...+...
T Consensus 1 ~i~~i~~~~~~~~~~~~~~~g~~~~~~~~g~~v--~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~ 78 (271)
T cd06312 1 KIAFVTHGPAGDPFWTVVKNGAEDAAKDLGVDV--EYRGPETFDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRA 78 (271)
T ss_pred CEEEecCCCCCCcHHHHHHHHHHHHHHHhCCEE--EEECCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHH
Confidence 477888765 442 34456666777788654 4444334 7888888888888888887777654333333344332
Q ss_pred --cCCcEEEe
Q 028883 135 --SQILVIRV 142 (202)
Q Consensus 135 --T~~PVIgV 142 (202)
-..||+.+
T Consensus 79 ~~~~ipvV~~ 88 (271)
T cd06312 79 VAAGIPVISF 88 (271)
T ss_pred HHCCCeEEEe
Confidence 24688776
No 161
>PRK10638 glutaredoxin 3; Provisional
Probab=75.10 E-value=8.8 Score=27.32 Aligned_cols=64 Identities=11% Similarity=0.081 Sum_probs=42.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCC
Q 028883 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 68 ~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~ 147 (202)
.+.=|.+.++...|++.|++|++.=+. ..++...++.+ ..+....|+|=+ .+.
T Consensus 9 ~~~Cp~C~~a~~~L~~~gi~y~~~dv~--~~~~~~~~l~~-----------------------~~g~~~vP~i~~--~g~ 61 (83)
T PRK10638 9 KATCPFCHRAKALLNSKGVSFQEIPID--GDAAKREEMIK-----------------------RSGRTTVPQIFI--DAQ 61 (83)
T ss_pred CCCChhHHHHHHHHHHcCCCcEEEECC--CCHHHHHHHHH-----------------------HhCCCCcCEEEE--CCE
Confidence 445589999999999999999875443 23333333332 224677888854 355
Q ss_pred CCChhh-HHHhh
Q 028883 148 DWSEDD-VINSI 158 (202)
Q Consensus 148 ~l~G~D-LlS~v 158 (202)
.++|.| |...-
T Consensus 62 ~igG~~~~~~~~ 73 (83)
T PRK10638 62 HIGGCDDLYALD 73 (83)
T ss_pred EEeCHHHHHHHH
Confidence 678888 76654
No 162
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=75.06 E-value=5.4 Score=35.66 Aligned_cols=85 Identities=13% Similarity=0.135 Sum_probs=46.0
Q ss_pred eEEEE--ecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH-HHHhhcCceEEEEecCCcCchhhhh-hhcc
Q 028883 60 IVGII--MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA-LSAKERGIKIIIVGDGVEAHLSGVA-AANS 135 (202)
Q Consensus 60 ~V~Ii--mGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~-~~~~~~g~~ViIa~AG~aa~Lpgvv-A~~T 135 (202)
+|+|+ .+...-.+..+++.+.|++.|+.+.+.-......++ ...+. ....+.+++++|++.| .+.+=.++ ....
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~d~vi~iGG-DGTlL~a~~~~~~ 79 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPE-FSEEDVLPLEEMDVDFIIAIGG-DGTILRIEHKTKK 79 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCc-ccccccccccccCCCEEEEEeC-cHHHHHHHHhcCC
Confidence 47777 445556677888888888888866653211111110 00011 1222235677776644 44443333 2335
Q ss_pred CCcEEEecCCC
Q 028883 136 QILVIRVPLLS 146 (202)
Q Consensus 136 ~~PVIgVP~~~ 146 (202)
..||+|+|.-.
T Consensus 80 ~~pi~gIn~G~ 90 (277)
T PRK03708 80 DIPILGINMGT 90 (277)
T ss_pred CCeEEEEeCCC
Confidence 78999999843
No 163
>PRK10824 glutaredoxin-4; Provisional
Probab=74.95 E-value=11 Score=29.76 Aligned_cols=74 Identities=16% Similarity=0.030 Sum_probs=48.9
Q ss_pred CeEEEEecCCC---CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 59 PIVGIIMESDL---DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 59 ~~V~IimGS~S---D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
..|.|+|=|+- ==|++.+|.++|+.+|++|+..-.- ..++ +.+.+++ .++..
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~--~d~~-~~~~l~~----------------------~sg~~ 69 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDIL--QNPD-IRAELPK----------------------YANWP 69 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEec--CCHH-HHHHHHH----------------------HhCCC
Confidence 45777877654 4578999999999999998643322 2333 3333332 23567
Q ss_pred CCcEEEecCCCCCCChhh-HHHhhc
Q 028883 136 QILVIRVPLLSEDWSEDD-VINSIR 159 (202)
Q Consensus 136 ~~PVIgVP~~~~~l~G~D-LlS~vq 159 (202)
+.|-|= +.+...+|.| |..+.+
T Consensus 70 TVPQIF--I~G~~IGG~ddl~~l~~ 92 (115)
T PRK10824 70 TFPQLW--VDGELVGGCDIVIEMYQ 92 (115)
T ss_pred CCCeEE--ECCEEEcChHHHHHHHH
Confidence 777765 4566678888 888765
No 164
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=74.91 E-value=25 Score=24.26 Aligned_cols=29 Identities=31% Similarity=0.279 Sum_probs=20.8
Q ss_pred EEEEccCCCchHHHHHHHHHhhcCceEEE
Q 028883 90 IKILPPHQNCKEALSYALSAKERGIKIII 118 (202)
Q Consensus 90 v~V~SaHRtp~~l~~~~~~~~~~g~~ViI 118 (202)
+-+.|..+..+++.+.++.++++|.++|.
T Consensus 51 ~i~iS~sg~t~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 51 VIALSYSGRTEELLAALEIAKELGIPVIA 79 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHHcCCeEEE
Confidence 56667777777788888888777776443
No 165
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=74.80 E-value=46 Score=27.31 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=48.3
Q ss_pred EEEEecCCCCHHHH----HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc--hhhhhhhc
Q 028883 61 VGIIMESDLDLPVM----NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH--LSGVAAAN 134 (202)
Q Consensus 61 V~IimGS~SD~~v~----~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~--LpgvvA~~ 134 (202)
|+|++.+.+| +.. +.+.+.+++.|. ++.+......+++..++++....++++.+|..+..... +--.. .
T Consensus 2 igvi~~~~~~-~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~--~ 76 (264)
T cd06274 2 IGLIIPDLEN-RSFARIAKRLEALARERGY--QLLIACSDDDPETERETVETLIARQVDALIVAGSLPPDDPYYLCQ--K 76 (264)
T ss_pred EEEEeccccC-chHHHHHHHHHHHHHHCCC--EEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCchHHHHHHH--h
Confidence 6777766554 333 344455667775 55555556678888888888888889988877654322 22222 2
Q ss_pred cCCcEEEe
Q 028883 135 SQILVIRV 142 (202)
Q Consensus 135 T~~PVIgV 142 (202)
-..||+.+
T Consensus 77 ~~ipvV~~ 84 (264)
T cd06274 77 AGLPVVAL 84 (264)
T ss_pred cCCCEEEe
Confidence 34677765
No 166
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=74.74 E-value=33 Score=28.40 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=51.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T 135 (202)
||+|.=+.+| ..+.+.+.+.++++|+ ++.+......++...++++.+..++++-||........+...+.- ..
T Consensus 2 ~g~~~~~~~~~~~~~~~~~~~~~a~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~ 79 (273)
T cd06309 2 VGFSQVGAESPWRTAETKSIKDAAEKRGF--DLKFADAQQKQENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAA 79 (273)
T ss_pred eeeccCCCCCHHHHHHHHHHHHHHHhcCC--EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHC
Confidence 3444444555 4566777888888886 555566666788888888888888888777755443332233322 34
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 80 ~iPvV~~ 86 (273)
T cd06309 80 GIPVILV 86 (273)
T ss_pred CCCEEEE
Confidence 6788876
No 167
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=74.68 E-value=35 Score=28.08 Aligned_cols=80 Identities=15% Similarity=0.152 Sum_probs=48.6
Q ss_pred EEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|+||.-+.+|. .+.+.+.+.++++|+ ++.+...-..+++..+.++++..++++.||..+..+.....++. ...
T Consensus 2 i~vi~~~~~~~~~~~~~~~i~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~ 79 (277)
T cd06319 2 IAYIVSDLRIPFWQIMGRGVKSKAKALGY--DAVELSAENSAKKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQA 79 (277)
T ss_pred eEEEeCCCCchHHHHHHHHHHHHHHhcCC--eEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHC
Confidence 56666554442 233455566777885 55555656677777787777777788877765543333333432 234
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 80 ~ipvV~~ 86 (277)
T cd06319 80 KIPVVIA 86 (277)
T ss_pred CCCEEEE
Confidence 6788865
No 168
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=74.65 E-value=4.9 Score=36.04 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=23.4
Q ss_pred CCeEEEEecCCCC-----HHHHHHHHHHHHHhCCC
Q 028883 58 APIVGIIMESDLD-----LPVMNDAARTLSDFGVP 87 (202)
Q Consensus 58 ~~~V~IimGS~SD-----~~v~~~a~~~L~~~gi~ 87 (202)
+.+|+|++||.|+ +.-++.+.+.|++.|..
T Consensus 3 ~~~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~ 37 (333)
T PRK01966 3 KMRVALLFGGRSAEHEVSLVSAKSVLKALDKEKYE 37 (333)
T ss_pred CcEEEEEeCCCCCcchhhHHHHHHHHHHhcccCCE
Confidence 3589999999999 45566777888777764
No 169
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=73.46 E-value=13 Score=32.85 Aligned_cols=78 Identities=21% Similarity=0.151 Sum_probs=50.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE--EEEccCC------CchHHHHHHHHHhhcCceEEEEecCCcCchhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--KILPPHQ------NCKEALSYALSAKERGIKIIIVGDGVEAHLSGV 130 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev--~V~SaHR------tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv 130 (202)
....|++|..- +...++++.|||+.++ .+-+ |- +...+.++.+-.++...+++++-.-....|+|.
T Consensus 30 ~~~~~~tg~h~-----~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~la~a 103 (365)
T TIGR00236 30 DSYVIVTAQHR-----EMLDQVLDLFHLPPDYDLNIMS-PGQTLGEITSNMLEGLEELLLEEKPDIVLVQGDTTTTLAGA 103 (365)
T ss_pred CEEEEEeCCCH-----HHHHHHHHhcCCCCCeeeecCC-CCCCHHHHHHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHH
Confidence 46788888863 4566777779998554 4433 32 222334454545556679888885567778777
Q ss_pred hhhc-cCCcEEEe
Q 028883 131 AAAN-SQILVIRV 142 (202)
Q Consensus 131 vA~~-T~~PVIgV 142 (202)
+++. ...||+.+
T Consensus 104 ~aa~~~~ipv~h~ 116 (365)
T TIGR00236 104 LAAFYLQIPVGHV 116 (365)
T ss_pred HHHHHhCCCEEEE
Confidence 7654 78899865
No 170
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=73.39 E-value=51 Score=27.50 Aligned_cols=69 Identities=20% Similarity=0.132 Sum_probs=43.2
Q ss_pred CCeEEEE-ecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883 58 APIVGII-MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 58 ~~~V~Ii-mGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv 131 (202)
.++|++| ++|..+....++..+.++++|+........-.-..+...+.+. .+++|+..-|-...+--.+
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~-----~ad~I~~~GG~~~~~~~~l 98 (210)
T cd03129 29 GARVLFIPTASGDRDEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLL-----EADGIFVGGGNQLRLLSVL 98 (210)
T ss_pred CCeEEEEeCCCCChHHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHh-----hCCEEEEcCCcHHHHHHHH
Confidence 4667766 7776677888999999999998744322211123344444443 2677777767766665554
No 171
>PF01177 Asp_Glu_race: Asp/Glu/Hydantoin racemase; InterPro: IPR015942 This entry represents a group of related proteins that includes aspartate racemase, glutamate racemase, hydantoin racemase and arylmalonate decarboxylase. Aspartate racemase (5.1.1.13 from EC) and glutamate racemase (5.1.1.3 from EC) are two evolutionary related bacterial enzymes that do not seem to require a cofactor for their activity []. Glutamate racemase, which interconverts L-glutamate into D-glutamate, is required for the biosynthesis of peptidoglycan and some peptide-based antibiotics such as gramicidin S. In addition to characterised aspartate and glutamate racemases, this family also includes a hypothetical protein from Erwinia carotovora and one from Escherichia coli (ygeA). Two conserved cysteines are present in the sequence of these enzymes. They are expected to play a role in catalytic activity by acting as bases in proton abstraction from the substrate.; PDB: 3S7Z_A 3S81_C 3OUT_A 3EIS_B 3IXL_A 3IP8_A 2VLB_D 3DTV_A 3IXM_A 3DG9_A ....
Probab=73.39 E-value=12 Score=30.60 Aligned_cols=81 Identities=16% Similarity=0.224 Sum_probs=51.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCc----hH----------HHHHHHHHhhcCceEEEEecCCc-C
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNC----KE----------ALSYALSAKERGIKIIIVGDGVE-A 125 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp----~~----------l~~~~~~~~~~g~~ViIa~AG~a-a 125 (202)
++++ +..++..+.++..+.+....-+ ++.+.+..+.| +. +.+.++.+++.|+++|+..-... .
T Consensus 1 Ig~i-~p~~~~~~~~~l~~~~~~~~~~-~v~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~g~d~i~i~C~s~~~ 78 (216)
T PF01177_consen 1 IGVI-SPNSNLTVERELRRMLPAREGQ-EVYFHDTRGFPDRIKEEDAGMSAILDRLIEAAEKLEKAGVDAIVIACNSAHP 78 (216)
T ss_dssp EEEE-SSSTTHHHHHHHHHHSTTSCCT-EEEEEETTTSCTSHHHHHHHHHHHHHHHHHHHHHHHHTTESEEEESSHHHHH
T ss_pred CEEE-EchHHHHHHHHHHHHhccccCC-EEEEEeCCCCCCccHHHhcchHHHHHHHHHHHHHHHhCCCCEEEEcCCchhh
Confidence 4566 8999999999999888775544 66666665333 33 22333555667888655543333 3
Q ss_pred chhhhhhhccCCcEEEec
Q 028883 126 HLSGVAAANSQILVIRVP 143 (202)
Q Consensus 126 ~LpgvvA~~T~~PVIgVP 143 (202)
.+.+.-......||++..
T Consensus 79 ~~~~~~~~~~~iPv~~~~ 96 (216)
T PF01177_consen 79 FVDELRKERVGIPVVGIV 96 (216)
T ss_dssp HHHHHHHHHHSSEEEESH
T ss_pred hHHHHhhhcCceEEEecc
Confidence 344443366799999943
No 172
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.37 E-value=39 Score=29.00 Aligned_cols=79 Identities=14% Similarity=0.127 Sum_probs=50.9
Q ss_pred EEEEecCC-CC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc--CceEEEEecCCcCchhhhhhh-
Q 028883 61 VGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEAHLSGVAAA- 133 (202)
Q Consensus 61 V~IimGS~-SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~--g~~ViIa~AG~aa~LpgvvA~- 133 (202)
|+|+.... +| ....+.+.+.++++|+ ++.+...+..+++..++++.+.++ +++.||..... .....++--
T Consensus 2 Igvi~~~~~~~~~~~~~~~gi~~~~~~~g~--~v~~~~~~~~~~~~~~~i~~~~~~~~~vdgiIi~~~~-~~~~~~~~~~ 78 (305)
T cd06324 2 VVFLNPGKSDEPFWNSVARFMQAAADDLGI--ELEVLYAERDRFLMLQQARTILQRPDKPDALIFTNEK-SVAPELLRLA 78 (305)
T ss_pred eEEecCCCCCCcHHHHHHHHHHHHHHhcCC--eEEEEeCCCCHHHHHHHHHHHHHhccCCCEEEEcCCc-cchHHHHHHH
Confidence 67777554 44 2334556677777876 455566778888888898888888 89877775432 234433322
Q ss_pred -ccCCcEEEe
Q 028883 134 -NSQILVIRV 142 (202)
Q Consensus 134 -~T~~PVIgV 142 (202)
.-..|||-+
T Consensus 79 ~~~giPvV~~ 88 (305)
T cd06324 79 EGAGVKLFLV 88 (305)
T ss_pred HhCCCeEEEE
Confidence 345688865
No 173
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=73.36 E-value=29 Score=29.27 Aligned_cols=81 Identities=10% Similarity=0.059 Sum_probs=48.3
Q ss_pred eEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883 60 IVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-- 133 (202)
Q Consensus 60 ~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~S-aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-- 133 (202)
+|++|..+.++ ..+.+.+.+.++++|+.+. +.. .--.++...++++.+..++++.||..+.....+..++.-
T Consensus 1 ~i~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~--~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~ 78 (294)
T cd06316 1 KAAIVMHTSGSDWSNAQVRGAKDEFAKLGIEVV--ATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVA 78 (294)
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHHHcCCEEE--EecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHH
Confidence 46777755433 3456667788888987554 322 223566666777777677788777654333333444433
Q ss_pred ccCCcEEEe
Q 028883 134 NSQILVIRV 142 (202)
Q Consensus 134 ~T~~PVIgV 142 (202)
....|||.+
T Consensus 79 ~~~iPvV~~ 87 (294)
T cd06316 79 EAGIKLVFM 87 (294)
T ss_pred HcCCcEEEe
Confidence 345688765
No 174
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=73.32 E-value=11 Score=25.83 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=23.8
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 028883 65 MESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (202)
Q Consensus 65 mGS~SD~~v~~~a~~~L~~~gi~~ev~V~S 94 (202)
+=|.+.=|.+.+|.+.|++.|++|+..=..
T Consensus 5 lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~ 34 (72)
T cd03029 5 LFTKPGCPFCARAKAALQENGISYEEIPLG 34 (72)
T ss_pred EEECCCCHHHHHHHHHHHHcCCCcEEEECC
Confidence 334567799999999999999999765444
No 175
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=73.15 E-value=43 Score=28.51 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=41.8
Q ss_pred CeEEEEecCC--CCHHHHHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHhh
Q 028883 59 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAKE 111 (202)
Q Consensus 59 ~~V~IimGS~--SD~~v~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~~ 111 (202)
.+|.|+.||. .|-.-+.++++.|++-||.+++ .+-..+-+.++++.|.+...+
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~~~ 163 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAVNG 163 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHhcC
Confidence 4777777776 4556777899999999999775 555589999999999987754
No 176
>PRK11175 universal stress protein UspE; Provisional
Probab=72.94 E-value=14 Score=31.81 Aligned_cols=67 Identities=12% Similarity=0.070 Sum_probs=42.1
Q ss_pred HHHHHHHHhCCCeE-EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEecCCC
Q 028883 76 DAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVPLLS 146 (202)
Q Consensus 76 ~a~~~L~~~gi~~e-v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP~~~ 146 (202)
...+.++++|++.+ ..+ .+..|. ..+.+.+++.+++.||.++-+-..+..+ +.-..++||+-||+.+
T Consensus 227 ~l~~~~~~~~~~~~~~~v--~~G~~~--~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHV--EEGLPE--EVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHHHhCCChhheee--ccCCHH--HHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 34455567888754 332 344454 3455556667899999988554444443 3567889999998643
No 177
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=72.85 E-value=50 Score=26.90 Aligned_cols=81 Identities=12% Similarity=0.157 Sum_probs=48.6
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
|+||.-+.++ ..+.+.+.+.++++|+...+.-.. .-.+++-.++++.+.++.++-+|..........-.-.-.-..
T Consensus 2 i~vi~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~i 80 (264)
T cd01574 2 IGVVTTDLALHGPSSTLAAIESAAREAGYAVTLSMLA-EADEEALRAAVRRLLAQRVDGVIVNAPLDDADAALAAAPADV 80 (264)
T ss_pred EEEEeCCCCcccHHHHHHHHHHHHHHCCCeEEEEeCC-CCchHHHHHHHHHHHhcCCCEEEEeCCCCChHHHHHHHhcCC
Confidence 5666654444 556778888889988765544322 222466777777777777887776554444332111122346
Q ss_pred cEEEe
Q 028883 138 LVIRV 142 (202)
Q Consensus 138 PVIgV 142 (202)
|||.+
T Consensus 81 pvv~~ 85 (264)
T cd01574 81 PVVFV 85 (264)
T ss_pred CEEEE
Confidence 88875
No 178
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=72.60 E-value=69 Score=28.36 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCCCCCCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEcc--CCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883 52 NGDSTDAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPP--HQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (202)
Q Consensus 52 ~~~~~~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~Sa--HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~ 126 (202)
+....+...|+++.-+..+- ...+.+.+.++++|+ ++.+... .-..++..+.++.+..++++.||........
T Consensus 40 n~~Ar~t~~Igvv~p~~~~~f~~~~~~gi~~aa~~~G~--~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~~~ 117 (343)
T PRK10936 40 LLKAKKAWKLCALYPHLKDSYWLSVNYGMVEEAKRLGV--DLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTPDG 117 (343)
T ss_pred ccccCCCeEEEEEecCCCchHHHHHHHHHHHHHHHhCC--EEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCChHH
Confidence 33334456899988654432 233456667778886 4544433 2345667778888888889877766543333
Q ss_pred hhhhh-hhccCCcEEEe
Q 028883 127 LSGVA-AANSQILVIRV 142 (202)
Q Consensus 127 Lpgvv-A~~T~~PVIgV 142 (202)
+-..+ +-.-..||+.+
T Consensus 118 ~~~~l~~~~~giPvV~~ 134 (343)
T PRK10936 118 LNPDLELQAANIPVIAL 134 (343)
T ss_pred hHHHHHHHHCCCCEEEe
Confidence 32333 23346798865
No 179
>PRK10116 universal stress protein UspC; Provisional
Probab=71.94 E-value=31 Score=25.98 Aligned_cols=62 Identities=19% Similarity=0.278 Sum_probs=38.9
Q ss_pred HHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh------hhccCCcEEEecCCC
Q 028883 82 SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA------AANSQILVIRVPLLS 146 (202)
Q Consensus 82 ~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv------A~~T~~PVIgVP~~~ 146 (202)
+..|++.+..+. .+..|. +.+.+.+++.+++.||.+.-+..+|.... .-.++.||+-||..+
T Consensus 74 ~~~~~~~~~~~~-~~G~~~--~~I~~~a~~~~~DLiV~g~~~~~~~~~~~s~a~~v~~~~~~pVLvv~~~~ 141 (142)
T PRK10116 74 QDADYPIEKTFI-AYGELS--EHILEVCRKHHFDLVICGNHNHSFFSRASCSAKRVIASSEVDVLLVPLTG 141 (142)
T ss_pred HhcCCCeEEEEE-ecCCHH--HHHHHHHHHhCCCEEEEcCCcchHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence 346666542222 233333 45666666778898888776655565543 336899999999754
No 180
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=71.55 E-value=34 Score=25.33 Aligned_cols=83 Identities=27% Similarity=0.257 Sum_probs=60.3
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCe---------------------EEEEEccCCCchHHHHHHHHHhhcCceEEE
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPY---------------------EIKILPPHQNCKEALSYALSAKERGIKIII 118 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~---------------------ev~V~SaHRtp~~l~~~~~~~~~~g~~ViI 118 (202)
+=.++.|.-+.+..++.+...|.++|... -+-+.|..+...++.+.++.++++|+++|.
T Consensus 6 ~~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~ 85 (131)
T PF01380_consen 6 KRIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGETRELIELLRFAKERGAPVIL 85 (131)
T ss_dssp SEEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeeccccchhhhhhhHHHHhcCCeEEE
Confidence 35678888889999999999998877641 167888999999999999999999998844
Q ss_pred EecCCcCchhhhhhhccCCcEEEecCCCC
Q 028883 119 VGDGVEAHLSGVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 119 a~AG~aa~LpgvvA~~T~~PVIgVP~~~~ 147 (202)
..+....-| +.+++. +|-+|....
T Consensus 86 iT~~~~~~l----~~~ad~-~l~~~~~~~ 109 (131)
T PF01380_consen 86 ITSNSESPL----ARLADI-VLYIPTGEE 109 (131)
T ss_dssp EESSTTSHH----HHHSSE-EEEEESSCG
T ss_pred EeCCCCCch----hhhCCE-EEEecCCCc
Confidence 443444433 334443 666776553
No 181
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=71.22 E-value=71 Score=27.95 Aligned_cols=36 Identities=28% Similarity=0.457 Sum_probs=17.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEccC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH 96 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~-~ev~V~SaH 96 (202)
|.++-|+|+ |.+-..++++.+++.|+. .|+.+.|.|
T Consensus 91 p~ivsi~g~--~~~~~~~~a~~~~~~G~d~iElN~~cP~ 127 (296)
T cd04740 91 PVIASIAGS--TVEEFVEVAEKLADAGADAIELNISCPN 127 (296)
T ss_pred cEEEEEecC--CHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 445555543 234445555555555554 345444433
No 182
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=71.14 E-value=50 Score=28.62 Aligned_cols=86 Identities=14% Similarity=0.220 Sum_probs=67.4
Q ss_pred CeEEEEecCCCC--HHHHHH-HHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc-
Q 028883 59 PIVGIIMESDLD--LPVMND-AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN- 134 (202)
Q Consensus 59 ~~V~IimGS~SD--~~v~~~-a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~- 134 (202)
.++++++...+| +..+.+ +.+..+++|+...+.....+..+..-.+.++++-.++.+.||....-+..+...+.--
T Consensus 34 ~~i~~~~~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~~~~~d~~~Q~~~i~~~ia~~~daIiv~~~d~~~~~~~v~~a~ 113 (322)
T COG1879 34 KTIGVVVPTLGNPFFQAVRKGAEAAAKKLGVVVAVVIADAQNDVAKQIAQIEDLIAQGVDAIIINPVDPDALTPAVKKAK 113 (322)
T ss_pred ceEEEEeccCCChHHHHHHHHHHHHHHHcCCcEEEEecccccChHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHH
Confidence 579999998888 333443 5667788998778888888888888878788888889999999999999998888654
Q ss_pred -cCCcEEEecC
Q 028883 135 -SQILVIRVPL 144 (202)
Q Consensus 135 -T~~PVIgVP~ 144 (202)
.-.|||.+=.
T Consensus 114 ~aGIpVv~~d~ 124 (322)
T COG1879 114 AAGIPVVTVDS 124 (322)
T ss_pred HCCCcEEEEec
Confidence 3469987543
No 183
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=71.08 E-value=68 Score=27.64 Aligned_cols=82 Identities=12% Similarity=0.106 Sum_probs=51.6
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA- 132 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA- 132 (202)
+...|+++....++ ..+.+.+.+.+++.|+ ++-+......++...++++.+..++++-||... .. ..+..+.
T Consensus 62 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~vdgiI~~~-~~-~~~~~~~~ 137 (331)
T PRK14987 62 TSRAIGVLLPSLTNQVFAEVLRGIESVTDAHGY--QTMLAHYGYKPEMEQERLESMLSWNIDGLILTE-RT-HTPRTLKM 137 (331)
T ss_pred CCCEEEEEeCCCcchhHHHHHHHHHHHHHHCCC--EEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC-CC-CCHHHHHH
Confidence 33579999865544 3445567777778884 566666666777777777777777888777643 22 1223332
Q ss_pred -hccCCcEEEe
Q 028883 133 -ANSQILVIRV 142 (202)
Q Consensus 133 -~~T~~PVIgV 142 (202)
.....|||-+
T Consensus 138 l~~~~iPvV~~ 148 (331)
T PRK14987 138 IEVAGIPVVEL 148 (331)
T ss_pred HHhCCCCEEEE
Confidence 2346788864
No 184
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=71.05 E-value=56 Score=26.66 Aligned_cols=81 Identities=11% Similarity=0.117 Sum_probs=46.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCc-hHHHHHHHHHhhcCceEEEEecCCcCchhhh-hhhcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKIIIVGDGVEAHLSGV-AAANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp-~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv-vA~~T 135 (202)
|+|++.+.++ ....+.+.+.++++|+.+. +....... +...++.+....++++.+|...+......-+ .+..-
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~ 79 (270)
T cd01545 2 IGLLYDNPSPGYVSEIQLGALDACRDTGYQLV--IEPCDSGSPDLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEA 79 (270)
T ss_pred EEEEEcCCCcccHHHHHHHHHHHHHhCCCeEE--EEeCCCCchHHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhc
Confidence 6777765443 3445566777788886554 44444333 3555666666677788777765543332211 12335
Q ss_pred CCcEEEec
Q 028883 136 QILVIRVP 143 (202)
Q Consensus 136 ~~PVIgVP 143 (202)
..||+.+=
T Consensus 80 ~ipvv~i~ 87 (270)
T cd01545 80 GVPYVRIA 87 (270)
T ss_pred CCCEEEEe
Confidence 67888763
No 185
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=70.72 E-value=57 Score=26.61 Aligned_cols=78 Identities=17% Similarity=0.113 Sum_probs=48.0
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--cc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T 135 (202)
|+++..+.+| ....+.+.+.++++|+ ++.+...-..++...++++.+..++++-||........ ..+.- ..
T Consensus 2 igvv~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--~~~~~l~~~ 77 (265)
T cd06299 2 IGVIVPDIRNPYFASLATAIQDAASAAGY--STIIGNSDENPETENRYLDNLLSQRVDGIIVVPHEQSA--EQLEDLLKR 77 (265)
T ss_pred EEEEecCCCCccHHHHHHHHHHHHHHcCC--EEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCh--HHHHHHHhC
Confidence 6777754433 3445566677788886 55555555678888888888888888866665433221 12222 24
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||-+
T Consensus 78 ~ipvV~~ 84 (265)
T cd06299 78 GIPVVFV 84 (265)
T ss_pred CCCEEEE
Confidence 5687654
No 186
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=70.51 E-value=49 Score=27.56 Aligned_cols=81 Identities=17% Similarity=0.221 Sum_probs=47.5
Q ss_pred eEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccC--CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-h
Q 028883 60 IVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-A 133 (202)
Q Consensus 60 ~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-~ 133 (202)
+|+|++.+.++. .+.+.+.+.++++|+. +-+.... ..++...++++++..++++.||..+.....+--+.. -
T Consensus 1 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~--~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~ 78 (268)
T cd06306 1 KLCVLYPHLKDAYWLSVNYGMVEEAKRLGVS--LKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQV 78 (268)
T ss_pred CeEEEcCCCCCHHHHHHHHHHHHHHHHcCCE--EEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHH
Confidence 477888765442 2334555667778864 4444433 235666678888888889888876544333221112 2
Q ss_pred ccCCcEEEe
Q 028883 134 NSQILVIRV 142 (202)
Q Consensus 134 ~T~~PVIgV 142 (202)
....|||-+
T Consensus 79 ~~giPvV~~ 87 (268)
T cd06306 79 AASIPVIAL 87 (268)
T ss_pred HCCCCEEEe
Confidence 345788865
No 187
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=70.24 E-value=15 Score=34.43 Aligned_cols=123 Identities=19% Similarity=0.198 Sum_probs=71.9
Q ss_pred cCceeEecCCh-----hhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE
Q 028883 16 RGTIPVLASSN-----GSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEI 90 (202)
Q Consensus 16 ~ghi~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev 90 (202)
+|...+...++ ++...++..+..-.+..-.|+.....+.|.-+.+|||||+.++.- .+....+++.-.-.+++
T Consensus 88 ~g~~ql~v~~i~~~g~G~l~~~~~~lk~~L~~eGlfd~~~k~~lP~~p~~I~viTs~~gAa--~~D~~~~~~~r~p~~~~ 165 (438)
T PRK00286 88 RGDYQLIVEEIEPAGIGALAAAFEQLKEKLAAEGLFDPERKKPLPFFPKRIGVITSPTGAA--IRDILTVLRRRFPLVEV 165 (438)
T ss_pred CCCEEEEEEEeeeCCccHHHHHHHHHHHHHHHCCCCChhhcCCCCCCCCEEEEEeCCccHH--HHHHHHHHHhcCCCCeE
Confidence 45555555553 355555555533333444566665556666667999999998864 67777777653222455
Q ss_pred EEEccCC----CchHHHHHHHHHhhcCceEEEEecCCcC--c--------hhhhhhhccCCcEEE
Q 028883 91 KILPPHQ----NCKEALSYALSAKERGIKIIIVGDGVEA--H--------LSGVAAANSQILVIR 141 (202)
Q Consensus 91 ~V~SaHR----tp~~l~~~~~~~~~~g~~ViIa~AG~aa--~--------LpgvvA~~T~~PVIg 141 (202)
.+..+-= .+..+.+-++.+...++||||.+=|+-+ - |.=.| ..++.|||.
T Consensus 166 ~~~~~~vQG~~A~~~i~~al~~~~~~~~Dviii~RGGGS~eDL~~Fn~e~v~~ai-~~~~~Pvis 229 (438)
T PRK00286 166 IIYPTLVQGEGAAASIVAAIERANARGEDVLIVARGGGSLEDLWAFNDEAVARAI-AASRIPVIS 229 (438)
T ss_pred EEecCcCcCccHHHHHHHHHHHhcCCCCCEEEEecCCCCHHHhhccCcHHHHHHH-HcCCCCEEE
Confidence 4444322 3445555445555555788888777643 2 23333 356888883
No 188
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=69.93 E-value=16 Score=32.47 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=45.0
Q ss_pred EEEEecCC-CCH-HHHHHHHHHHHHhCCCeEEEEEc-------cCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883 61 VGIIMESD-LDL-PVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (202)
Q Consensus 61 V~IimGS~-SD~-~v~~~a~~~L~~~gi~~ev~V~S-------aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~ 126 (202)
|+||+=|. -+. +..+++.+.|+++|....+.=.. +.---+|..++.+-+.+..++.|++.-|+.++
T Consensus 1 I~iiapSs~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~a~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~ga 75 (282)
T cd07025 1 IGIVAPSSPIDEEERLERAIARLESLGLEVVVGPHVLARDGYLAGTDEERAADLNAAFADPEIKAIWCARGGYGA 75 (282)
T ss_pred CEEEeCCCCCCcHHHHHHHHHHHHhCCCEEEeccchhhhcCccCCCHHHHHHHHHHHhhCCCCCEEEEcCCcCCH
Confidence 34554443 244 89999999999999865442111 22234567777777777779999999999764
No 189
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=69.90 E-value=9.9 Score=30.84 Aligned_cols=55 Identities=15% Similarity=0.049 Sum_probs=38.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa 125 (202)
..|.|+=-|. .+.+..+..|.+-| ..|...|+....+.++++ .+|++|++.|...
T Consensus 29 k~v~VvGrs~---~vG~pla~lL~~~g----atV~~~~~~t~~l~~~v~-----~ADIVvsAtg~~~ 83 (140)
T cd05212 29 KKVLVVGRSG---IVGAPLQCLLQRDG----ATVYSCDWKTIQLQSKVH-----DADVVVVGSPKPE 83 (140)
T ss_pred CEEEEECCCc---hHHHHHHHHHHHCC----CEEEEeCCCCcCHHHHHh-----hCCEEEEecCCCC
Confidence 4566665553 46777777787665 455566876666777664 3799999999884
No 190
>PTZ00062 glutaredoxin; Provisional
Probab=69.76 E-value=18 Score=31.12 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=49.1
Q ss_pred CeEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 59 PIVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 59 ~~V~IimGS~---SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
..|.|+|=|+ +.=+.++++.+.|++.||+|+..=+. ..+ +..+.+++ ..+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~--~d~-~~~~~l~~----------------------~sg~~ 167 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIF--EDP-DLREELKV----------------------YSNWP 167 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcC--CCH-HHHHHHHH----------------------HhCCC
Confidence 4577888765 46788889999999999998743332 222 33333332 23557
Q ss_pred CCcEEEecCCCCCCChhh-HHHhhc
Q 028883 136 QILVIRVPLLSEDWSEDD-VINSIR 159 (202)
Q Consensus 136 ~~PVIgVP~~~~~l~G~D-LlS~vq 159 (202)
+.|.|= +.+...+|.| |..+.+
T Consensus 168 TvPqVf--I~G~~IGG~d~l~~l~~ 190 (204)
T PTZ00062 168 TYPQLY--VNGELIGGHDIIKELYE 190 (204)
T ss_pred CCCeEE--ECCEEEcChHHHHHHHH
Confidence 778776 4466678999 888765
No 191
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=69.76 E-value=33 Score=23.54 Aligned_cols=68 Identities=12% Similarity=-0.038 Sum_probs=42.5
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEE
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI 140 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVI 140 (202)
|-|.+-+ .=|.+++|.+.|++.||+|+..=+. ..++...++.+. .+....|+|
T Consensus 3 v~ly~~~--~C~~C~ka~~~L~~~gi~~~~~di~--~~~~~~~el~~~-----------------------~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRL--GCEDCTAVRLFLREKGLPYVEINID--IFPERKAELEER-----------------------TGSSVVPQI 55 (73)
T ss_pred EEEEecC--CChhHHHHHHHHHHCCCceEEEECC--CCHHHHHHHHHH-----------------------hCCCCcCEE
Confidence 4444443 3488999999999999999876443 334444444321 133566777
Q ss_pred EecCCCCCCChhh-HHHh
Q 028883 141 RVPLLSEDWSEDD-VINS 157 (202)
Q Consensus 141 gVP~~~~~l~G~D-LlS~ 157 (202)
=+- +...+|.| |.++
T Consensus 56 ~i~--~~~iGg~~~~~~~ 71 (73)
T cd03027 56 FFN--EKLVGGLTDLKSL 71 (73)
T ss_pred EEC--CEEEeCHHHHHhh
Confidence 433 44567888 7765
No 192
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=69.72 E-value=9.8 Score=34.36 Aligned_cols=86 Identities=17% Similarity=0.138 Sum_probs=48.7
Q ss_pred CeEEEE--ecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHH-HHhhcCceEEEEecCCcCchhhhhhh--
Q 028883 59 PIVGII--MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL-SAKERGIKIIIVGDGVEAHLSGVAAA-- 133 (202)
Q Consensus 59 ~~V~Ii--mGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~-~~~~~g~~ViIa~AG~aa~LpgvvA~-- 133 (202)
.+|+|+ .+.....+.++++.+.|++.|+.+.+.-......+..-..+.. +...++++++|++ |+.+-+-.++..
T Consensus 5 ~~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~-GGDGt~l~~~~~~~ 83 (295)
T PRK01231 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVV-GGDGSLLGAARALA 83 (295)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEE-eCcHHHHHHHHHhc
Confidence 468888 4555556678888888988898765532221111110001100 1112356766665 666655555543
Q ss_pred ccCCcEEEecCC
Q 028883 134 NSQILVIRVPLL 145 (202)
Q Consensus 134 ~T~~PVIgVP~~ 145 (202)
....||+||.+-
T Consensus 84 ~~~~Pvlgin~G 95 (295)
T PRK01231 84 RHNVPVLGINRG 95 (295)
T ss_pred CCCCCEEEEeCC
Confidence 468899999873
No 193
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=69.62 E-value=8.7 Score=35.17 Aligned_cols=48 Identities=15% Similarity=0.198 Sum_probs=32.3
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-hccCCcEEEecCCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA-ANSQILVIRVPLLS 146 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-~~T~~PVIgVP~~~ 146 (202)
.++...+.++..++.+++.+|++-| .+.+-+.-. +...+||||+|-.-
T Consensus 77 ~~~~~~~~~~~l~~~~Id~Li~IGG-dgs~~~a~~L~e~~i~vigiPkTI 125 (317)
T cd00763 77 DEEGQAKAIEQLKKHGIDALVVIGG-DGSYMGAMRLTEHGFPCVGLPGTI 125 (317)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECC-chHHHHHHHHHHcCCCEEEecccc
Confidence 3456677777888888888887766 444444322 33469999999763
No 194
>PRK08862 short chain dehydrogenase; Provisional
Probab=69.59 E-value=28 Score=29.10 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=14.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi 86 (202)
+++++|+|.++.+ ....+..|.+-|.
T Consensus 5 ~k~~lVtGas~GI--G~aia~~la~~G~ 30 (227)
T PRK08862 5 SSIILITSAGSVL--GRTISCHFARLGA 30 (227)
T ss_pred CeEEEEECCccHH--HHHHHHHHHHCCC
Confidence 3567777776643 4444444444443
No 195
>PRK09526 lacI lac repressor; Reviewed
Probab=69.44 E-value=74 Score=27.41 Aligned_cols=84 Identities=8% Similarity=0.067 Sum_probs=49.1
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccC-CCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhh
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPH-QNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVA 131 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaH-Rtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~Lpgvv 131 (202)
+...|+++..+.++ ....+.+.+.++++|+.+ .+.... ..++...++++.+..++++-||..... ...+.-+.
T Consensus 62 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~--~i~~~~~~~~~~~~~~l~~l~~~~vdGiii~~~~~~~~~~~~~ 139 (342)
T PRK09526 62 QSLTIGLATTSLALHAPSQIAAAIKSRADQLGYSV--VISMVERSGVEACQAAVNELLAQRVSGVIINVPLEDADAEKIV 139 (342)
T ss_pred CCceEEEEeCCCCcccHHHHHHHHHHHHHHCCCEE--EEEeCCCChHHHHHHHHHHHHhcCCCEEEEecCCCcchHHHHH
Confidence 34679999986544 235566777788888654 444333 345666677777777888866654222 22222222
Q ss_pred hhccCCcEEEe
Q 028883 132 AANSQILVIRV 142 (202)
Q Consensus 132 A~~T~~PVIgV 142 (202)
.-....||+-+
T Consensus 140 ~~~~~iPvV~~ 150 (342)
T PRK09526 140 ADCADVPCLFL 150 (342)
T ss_pred hhcCCCCEEEE
Confidence 22235787755
No 196
>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription
Probab=69.34 E-value=61 Score=26.48 Aligned_cols=77 Identities=12% Similarity=0.201 Sum_probs=47.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
|+|+.-+.++ ..+.+.+.+.++++|..+ .+...-..++...++++.+..++++.+|.... ...+- -+-....
T Consensus 2 I~vi~~~~~~~~~~~~~~gi~~~~~~~g~~~--~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~-~~~~~--~~~~~gi 76 (265)
T cd06291 2 IGLIVPTISNPFFSELARAVEKELYKKGYKL--ILCNSDNDPEKEREYLEMLRQNQVDGIIAGTH-NLGIE--EYENIDL 76 (265)
T ss_pred EEEEECCCCChhHHHHHHHHHHHHHHCCCeE--EEecCCccHHHHHHHHHHHHHcCCCEEEEecC-CcCHH--HHhcCCC
Confidence 6777765443 344556677888888654 44444456777778888888888887777543 22332 1123456
Q ss_pred cEEEe
Q 028883 138 LVIRV 142 (202)
Q Consensus 138 PVIgV 142 (202)
|||.+
T Consensus 77 pvv~~ 81 (265)
T cd06291 77 PIVSF 81 (265)
T ss_pred CEEEE
Confidence 77765
No 197
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=69.23 E-value=52 Score=29.18 Aligned_cols=85 Identities=13% Similarity=0.128 Sum_probs=55.8
Q ss_pred CCCCeEEEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883 56 TDAPIVGIIMESDLDL---PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA 132 (202)
Q Consensus 56 ~~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA 132 (202)
.+..+|++++.+..+- .+.+.+.+.++++| |++.+++....++...++++++..++++.||........+.-.+.
T Consensus 23 ~~~~~Ig~i~~~~~~~f~~~~~~gi~~~a~~~g--~~l~i~~~~~~~~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~ 100 (330)
T PRK10355 23 AKEVKIGMAIDDLRLERWQKDRDIFVKKAESLG--AKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVIK 100 (330)
T ss_pred CCCceEEEEecCCCchHHHHHHHHHHHHHHHcC--CEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHH
Confidence 3567899999654433 22334455666777 567778888889989999999988889877776543332222221
Q ss_pred --hccCCcEEEe
Q 028883 133 --ANSQILVIRV 142 (202)
Q Consensus 133 --~~T~~PVIgV 142 (202)
.....|||-+
T Consensus 101 ~~~~~~iPvV~i 112 (330)
T PRK10355 101 EAKQEGIKVLAY 112 (330)
T ss_pred HHHHCCCeEEEE
Confidence 2345788877
No 198
>PLN02204 diacylglycerol kinase
Probab=69.21 E-value=21 Score=35.81 Aligned_cols=101 Identities=7% Similarity=-0.029 Sum_probs=61.6
Q ss_pred eeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEE----ecCCCCHHHHHHHHHHHHHhCCCeEEEEEc
Q 028883 19 IPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGII----MESDLDLPVMNDAARTLSDFGVPYEIKILP 94 (202)
Q Consensus 19 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~Ii----mGS~SD~~v~~~a~~~L~~~gi~~ev~V~S 94 (202)
.|+-.++...|+.-++.|. ..+... ...+.++.|| .|........++++..|+..|+.+++.+.-
T Consensus 131 ~~f~~~d~~~~~~w~~~l~---------~~l~~~--~~r~k~llVivNP~sGkg~~~~~~~~V~p~f~~a~i~~~v~~T~ 199 (601)
T PLN02204 131 YTFGHKDLQTCQSWVDRLN---------ASLNKE--VGRPKNLLVFVHPLSGKGSGSRTWETVSPIFIRAKVKTKVIVTE 199 (601)
T ss_pred EeecCCCHHHHHHHHHHHH---------HHHhhc--cCCCceEEEEECCCCCCcchHHHHHHHHHHHHHcCCeEEEEEec
Confidence 4565666666666555554 222111 1222344454 466777788889999999999998888775
Q ss_pred cCCCchHHHHHHHHH---hhcCceEEEEecCCcCchhhhhhhc
Q 028883 95 PHQNCKEALSYALSA---KERGIKIIIVGDGVEAHLSGVAAAN 134 (202)
Q Consensus 95 aHRtp~~l~~~~~~~---~~~g~~ViIa~AG~aa~LpgvvA~~ 134 (202)
.. ....++++++ +..+++.|||+ |+.+-+--++-|+
T Consensus 200 ~a---ghA~d~~~~~~~~~l~~~D~VVaV-GGDGt~nEVlNGL 238 (601)
T PLN02204 200 RA---GHAFDVMASISNKELKSYDGVIAV-GGDGFFNEILNGY 238 (601)
T ss_pred Cc---chHHHHHHHHhhhhccCCCEEEEE-cCccHHHHHHHHH
Confidence 43 3334444433 34567877764 6677666666555
No 199
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=69.03 E-value=35 Score=31.15 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=18.9
Q ss_pred ceEEEEecCCcCchhhhhhh-ccCCcEEEe
Q 028883 114 IKIIIVGDGVEAHLSGVAAA-NSQILVIRV 142 (202)
Q Consensus 114 ~~ViIa~AG~aa~LpgvvA~-~T~~PVIgV 142 (202)
.+++++..=....|++.+|| ...+||+.+
T Consensus 94 Pd~vlv~GD~~~~la~alaA~~~~IPv~Hv 123 (365)
T TIGR03568 94 PDLVVVLGDRFEMLAAAIAAALLNIPIAHI 123 (365)
T ss_pred CCEEEEeCCchHHHHHHHHHHHhCCcEEEE
Confidence 46555554466677765555 588899964
No 200
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=68.93 E-value=35 Score=28.63 Aligned_cols=69 Identities=13% Similarity=0.061 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--ccCCcEEEe
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 142 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T~~PVIgV 142 (202)
...+.+.+.++++| |++.+......+++..++++++..++++.||..+.......-.+.. ....|||-+
T Consensus 16 ~~~~gi~~~~~~~G--~~~~~~~~~~d~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~ 86 (272)
T cd06313 16 QGKQAADEAGKLLG--VDVTWYGGALDAVKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDM 86 (272)
T ss_pred HHHHHHHHHHHHcC--CEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEe
Confidence 34455666677787 5666777777999999999999888888777765433333333322 246788875
No 201
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=68.65 E-value=60 Score=28.57 Aligned_cols=87 Identities=9% Similarity=0.042 Sum_probs=52.3
Q ss_pred CCCCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883 55 STDAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 55 ~~~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv 131 (202)
..+...|+++....++ ...++.+.+.++++| .+++.+......++...++++.+..++++-||..+......+..+
T Consensus 21 ~~~~~~Igvv~~~~~~~f~~~~~~gi~~~a~~~g-~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l 99 (330)
T PRK15395 21 AAADTRIGVTIYKYDDNFMSVVRKAIEKDAKAAP-DVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAPTVI 99 (330)
T ss_pred hcCCceEEEEEecCcchHHHHHHHHHHHHHHhcC-CeEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeccCHHHHHHHH
Confidence 3445679988866554 233445556677776 245555333345666667777777788887777654434445444
Q ss_pred hh--ccCCcEEEe
Q 028883 132 AA--NSQILVIRV 142 (202)
Q Consensus 132 A~--~T~~PVIgV 142 (202)
.- .-..|||-+
T Consensus 100 ~~l~~~giPvV~v 112 (330)
T PRK15395 100 EKARGQDVPVVFF 112 (330)
T ss_pred HHHHHCCCcEEEE
Confidence 33 235688776
No 202
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=68.34 E-value=18 Score=31.41 Aligned_cols=67 Identities=12% Similarity=0.043 Sum_probs=50.3
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC-CchHHHHHHHHHhhcCceEEEEecCCc-Cchhhhh
Q 028883 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDGVE-AHLSGVA 131 (202)
Q Consensus 64 imGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR-tp~~l~~~~~~~~~~g~~ViIa~AG~a-a~Lpgvv 131 (202)
+.-+.||...++++.+..++.|....+.+.-++| +|+.+.++++.+.+-|++.| ..+=.. ...|--+
T Consensus 104 i~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i-~l~DT~G~~~P~~v 172 (263)
T cd07943 104 VATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCV-YVTDSAGAMLPDDV 172 (263)
T ss_pred EEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEE-EEcCCCCCcCHHHH
Confidence 3458889999999999999999988888866666 48888999999988888865 444333 3344433
No 203
>PHA03050 glutaredoxin; Provisional
Probab=68.34 E-value=27 Score=26.86 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=46.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC---CeEEEEEcc-CCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGV---PYEIKILPP-HQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi---~~ev~V~Sa-HRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 134 (202)
..|.|.+ .+.=|++.+|.+.|+++|+ +|++.=+.. |..++...++ + + +.+.
T Consensus 13 ~~V~vys--~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l-~---~-------------------~tG~ 67 (108)
T PHA03050 13 NKVTIFV--KFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYF-E---Q-------------------ITGG 67 (108)
T ss_pred CCEEEEE--CCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHH-H---H-------------------HcCC
Confidence 3555554 5558999999999999999 564433332 2233322222 2 1 2356
Q ss_pred cCCcEEEecCCCCCCChhh-HHHhhc
Q 028883 135 SQILVIRVPLLSEDWSEDD-VINSIR 159 (202)
Q Consensus 135 T~~PVIgVP~~~~~l~G~D-LlS~vq 159 (202)
++.|.|=+- +...+|.| |..+-|
T Consensus 68 ~tVP~IfI~--g~~iGG~ddl~~l~~ 91 (108)
T PHA03050 68 RTVPRIFFG--KTSIGGYSDLLEIDN 91 (108)
T ss_pred CCcCEEEEC--CEEEeChHHHHHHHH
Confidence 788988544 55578888 877655
No 204
>cd00858 GlyRS_anticodon GlyRS Glycyl-anticodon binding domain. GlyRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=68.14 E-value=27 Score=26.70 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=39.2
Q ss_pred CeEEEEecC--CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 59 PIVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 59 ~~V~IimGS--~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
..|.|+.-+ ......+.+.+..|+..|+.+++... |.+.+-. +.+++.|++.+|.+..
T Consensus 27 ~~v~Ii~~~~~~~~~~~a~~la~~LR~~gi~v~~d~~---~sl~kql---k~A~k~g~~~~iiiG~ 86 (121)
T cd00858 27 IKVAVLPLVKRDELVEIAKEISEELRELGFSVKYDDS---GSIGRRY---ARQDEIGTPFCVTVDF 86 (121)
T ss_pred cEEEEEecCCcHHHHHHHHHHHHHHHHCCCEEEEeCC---CCHHHHH---HHhHhcCCCEEEEECc
Confidence 467777777 56677888888888888998877642 5555444 4455678875555543
No 205
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=68.14 E-value=58 Score=28.93 Aligned_cols=93 Identities=24% Similarity=0.245 Sum_probs=59.2
Q ss_pred ccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccC----CCchHHHHHHHHHhhcC----ceEE
Q 028883 46 FEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH----QNCKEALSYALSAKERG----IKII 117 (202)
Q Consensus 46 ~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH----Rtp~~l~~~~~~~~~~g----~~Vi 117 (202)
|+.....+.|.-+.+||||++.++ ...+....+++.-+-.+++.+..+- -.+..+.+-++.+...+ ++||
T Consensus 2 fd~~~k~~lP~~p~~I~vITs~~g--Aa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dvi 79 (319)
T PF02601_consen 2 FDPNRKKPLPKFPKRIAVITSPTG--AAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVI 79 (319)
T ss_pred CCcccCCCCCCCCCEEEEEeCCch--HHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEE
Confidence 455444555666679999998765 4567888888875555666665544 35666666666666544 7888
Q ss_pred EEecCCcC--ch--------hhhhhhccCCcEEE
Q 028883 118 IVGDGVEA--HL--------SGVAAANSQILVIR 141 (202)
Q Consensus 118 Ia~AG~aa--~L--------pgvvA~~T~~PVIg 141 (202)
|.+=||-+ -| .=.| +.++.|||.
T Consensus 80 ii~RGGGs~eDL~~FN~e~varai-~~~~~Pvis 112 (319)
T PF02601_consen 80 IIIRGGGSIEDLWAFNDEEVARAI-AASPIPVIS 112 (319)
T ss_pred EEecCCCChHHhcccChHHHHHHH-HhCCCCEEE
Confidence 88776643 22 2222 356778873
No 206
>cd06286 PBP1_CcpB_like Ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. This group includes the ligand-binding domain of a novel transcription factor implicated in catabolite repression in Bacillus and Clostridium species. CcpB is 30% identical in sequence to CcpA which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. Like CcpA, the DNA-binding protein CcpB exerts its catabolite-repressing effect by a mechanism dependent on the presence of HPr(Ser-P), the small phosphocarrier proteins of the phosphoenolpyruvate-sugar phosphotransferase system, but with a less significant degree.
Probab=68.13 E-value=42 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.254 Sum_probs=42.1
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
|++++-+.++ ....+.+.+.++++|+ ++.+...+..+++..+.++.+..++++.||...
T Consensus 2 i~~i~~~~~~~~~~~i~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~ 63 (260)
T cd06286 2 IGVVLPYINHPYFSQLVDGIEKAALKHGY--KVVLLQTNYDKEKELEYLELLKTKQVDGLILCS 63 (260)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEeC
Confidence 5666655443 4555677888888885 555666688898888888888888888666643
No 207
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=68.05 E-value=48 Score=24.69 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=52.3
Q ss_pred EEecCCCCHHHHHHHHHHHHHhC-CCeE-------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 63 IIMESDLDLPVMNDAARTLSDFG-VPYE-------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 63 IimGS~SD~~v~~~a~~~L~~~g-i~~e-------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
.+.|.-+-...++.+...|.++| +++. +-++|.....+++.+.++.++++|+++|.....
T Consensus 3 ~i~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 3 LIVGCGTSYHAALVAKYLLERLAGIPVEVEAASEFRYRRPLLDEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred EEEEccHHHHHHHHHHHHHHHhcCCceEEEehhHhhhcCCCCCCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 45566677778888888888876 5532 466777778888888888888888876655555
Q ss_pred CcCchhhhhhhccCCcEEEecC
Q 028883 123 VEAHLSGVAAANSQILVIRVPL 144 (202)
Q Consensus 123 ~aa~LpgvvA~~T~~PVIgVP~ 144 (202)
..+.|.. ..+. +|-+|.
T Consensus 83 ~~s~la~----~ad~-~l~~~~ 99 (126)
T cd05008 83 VGSTLAR----EADY-VLYLRA 99 (126)
T ss_pred CCChHHH----hCCE-EEEecC
Confidence 5555443 3333 445554
No 208
>PRK05867 short chain dehydrogenase; Provisional
Probab=67.65 E-value=36 Score=28.21 Aligned_cols=45 Identities=9% Similarity=0.018 Sum_probs=30.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~ 109 (202)
.++++|+|+++ .+...+++.|-+-|. + |+-..|.+++++++.++.
T Consensus 9 ~k~vlVtGas~--gIG~~ia~~l~~~G~--~--V~~~~r~~~~~~~~~~~l 53 (253)
T PRK05867 9 GKRALITGAST--GIGKRVALAYVEAGA--Q--VAIAARHLDALEKLADEI 53 (253)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCC--E--EEEEcCCHHHHHHHHHHH
Confidence 57899999988 456777777777775 2 333456666666555443
No 209
>cd00859 HisRS_anticodon HisRS Histidyl-anticodon binding domain. HisRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=67.59 E-value=34 Score=23.23 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=39.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
.|.|+.-+..+.+.+.+.+..|.+-|+.+++.... +.+++. .+.+...|+..++.+.
T Consensus 3 ~v~i~~~~~~~~~~a~~i~~~Lr~~g~~v~~~~~~--~~~~~~---~~~a~~~~~~~~i~i~ 59 (91)
T cd00859 3 DVYVVPLGEGALSEALELAEQLRDAGIKAEIDYGG--RKLKKQ---FKYADRSGARFAVILG 59 (91)
T ss_pred cEEEEEcChHHHHHHHHHHHHHHHCCCEEEEecCC--CCHHHH---HHHHHHcCCCEEEEEc
Confidence 57788888888888999999999999977765433 334444 4445567776555443
No 210
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=67.44 E-value=66 Score=26.09 Aligned_cols=78 Identities=13% Similarity=0.171 Sum_probs=46.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hhcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~~T 135 (202)
|+++..+.+| ..+.+.+.+.++++|+.+. +....... ...+.++++..++++.||..+..... ..+ +...
T Consensus 2 I~~i~~~~~~~~~~~~~~~i~~~~~~~g~~~~--~~~~~~~~-~~~~~i~~~~~~~vdgiii~~~~~~~--~~~~~~~~~ 76 (266)
T cd06278 2 IGVVVADLDNPFYSELLEALSRALQARGYQPL--LINTDDDE-DLDAALRQLLQYRVDGVIVTSGTLSS--ELAEECRRN 76 (266)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHHHHCCCeEE--EEcCCCCH-HHHHHHHHHHHcCCCEEEEecCCCCH--HHHHHHhhc
Confidence 6777765554 2344566677888987654 44443333 55667777777888877776543222 222 2234
Q ss_pred CCcEEEec
Q 028883 136 QILVIRVP 143 (202)
Q Consensus 136 ~~PVIgVP 143 (202)
..|||.+=
T Consensus 77 ~ipvV~~~ 84 (266)
T cd06278 77 GIPVVLIN 84 (266)
T ss_pred CCCEEEEC
Confidence 67888873
No 211
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=67.31 E-value=50 Score=24.65 Aligned_cols=67 Identities=21% Similarity=0.240 Sum_probs=46.1
Q ss_pred EEecCCCCHHHHHHHHHHHHHhCCCeE--------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 63 IIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 63 IimGS~SD~~v~~~a~~~L~~~gi~~e--------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
.+.|.-+=...++.....|..+|.+.. +-+.|..+..+++.+.++.++++|++||.....
T Consensus 4 ~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~ 83 (128)
T cd05014 4 VVTGVGKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGN 83 (128)
T ss_pred EEEeCcHhHHHHHHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 445555556777777777777776532 456677777788888888888888777666666
Q ss_pred CcCchhh
Q 028883 123 VEAHLSG 129 (202)
Q Consensus 123 ~aa~Lpg 129 (202)
..+-|..
T Consensus 84 ~~s~la~ 90 (128)
T cd05014 84 PNSTLAK 90 (128)
T ss_pred CCCchhh
Confidence 6665555
No 212
>PRK05234 mgsA methylglyoxal synthase; Validated
Probab=67.11 E-value=67 Score=26.06 Aligned_cols=124 Identities=13% Similarity=0.124 Sum_probs=75.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHh--CCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEEecC---CcCchhhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDF--GVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDG---VEAHLSGVAA 132 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~--gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG---~aa~LpgvvA 132 (202)
.+...++-+++|.+.+.+.++-|.++ |.. +--. .-+.++++ +. |+.|-.+..| +..++..++.
T Consensus 4 ~~~v~lsv~d~dK~~l~~~a~~l~~ll~Gf~--l~AT------~gTa~~L~---~~~Gi~v~~vi~~~~gg~~~i~~~I~ 72 (142)
T PRK05234 4 RKRIALIAHDHKKDDLVAWVKAHKDLLEQHE--LYAT------GTTGGLIQ---EATGLDVTRLLSGPLGGDQQIGALIA 72 (142)
T ss_pred CcEEEEEEeccchHHHHHHHHHHHHHhcCCE--EEEe------ChHHHHHH---hccCCeeEEEEcCCCCCchhHHHHHH
Confidence 34567778999999999999999999 854 3211 23444444 24 6765444555 5566777777
Q ss_pred hccCCcEEEec--CCCC--CCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 028883 133 ANSQILVIRVP--LLSE--DWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYV 200 (202)
Q Consensus 133 ~~T~~PVIgVP--~~~~--~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~ 200 (202)
..-.-=||..| .... .-+|..|...... -+||+.|= ...|...++-+.. |.++++-.-+|.
T Consensus 73 ~g~i~lVInt~dp~~~~~~~~D~~~IRR~Av~-~~IP~~T~-----l~tA~a~~~al~~-~~~~~~~~~~~~ 137 (142)
T PRK05234 73 EGKIDMLIFFRDPLTAQPHDPDVKALLRLADV-WNIPVATN-----RATADFLISSLLF-DDEVEILIPDYQ 137 (142)
T ss_pred cCceeEEEEecCCCCCCcccchHHHHHHHHHH-cCCCEEcC-----HHHHHHHHHHHhc-ccchhhcccchh
Confidence 66666699998 4221 2256664333322 68998773 2333334444545 777766554443
No 213
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=67.10 E-value=34 Score=29.17 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=48.1
Q ss_pred HHHHhCCCeEEEEEccC----CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 80 TLSDFGVPYEIKILPPH----QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 80 ~L~~~gi~~ev~V~SaH----Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
.+++||+... .+.+.. =+|+++.++.+..++.++++|+.=.+.+..+.-.+|-.+..||+-+...
T Consensus 163 ~~~~~gl~~~-~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~i~~e~~~~~~~~~~la~~~g~~vv~ld~l 231 (256)
T PF01297_consen 163 FAKRYGLKVI-GVIEISPGEEPSPKDLAELIKLIKENKVKCIFTEPQFSSKLAEALAKETGVKVVYLDPL 231 (256)
T ss_dssp HHHHTT-EEE-EEESSSSSSSS-HHHHHHHHHHHHHTT-SEEEEETTS-THHHHHHHHCCT-EEEESSTT
T ss_pred HHHhcCCcee-eeeccccccCCCHHHHHHHHHHhhhcCCcEEEecCCCChHHHHHHHHHcCCcEEEeCCC
Confidence 3467888733 333222 4788999999999999999999999999999999999999999877766
No 214
>PRK12757 cell division protein FtsN; Provisional
Probab=66.96 E-value=47 Score=30.01 Aligned_cols=65 Identities=17% Similarity=0.052 Sum_probs=53.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE-------EE-EccCCCchHHHHHHHHHhhcCc-eEEEEecCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI-------KI-LPPHQNCKEALSYALSAKERGI-KIIIVGDGV 123 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev-------~V-~SaHRtp~~l~~~~~~~~~~g~-~ViIa~AG~ 123 (202)
....|=.||.+|..-++....-|...|++..+ || ++...+.+...++.+.+...|+ .+||..+|+
T Consensus 183 ~~~~VQVGAF~~~~nAe~L~arL~~~G~~a~I~~~gg~yRVrVGPf~sr~~A~~~~~rLk~~G~~~~iiva~gg 256 (256)
T PRK12757 183 QRWMVQCGSFKGTEQAESVRAQLAFAGIESRITTGGGWNRVVLGPYNSKAAADKMLQRLKGAGHSGCIPLAAGG 256 (256)
T ss_pred ccEEEEEeeCCCHHHHHHHHHHHHhcCCceEEeecCCEEEEEeCCCCCHHHHHHHHHHHHHcCCCCeEEeccCC
Confidence 45778899999999999999999998886443 22 5677788999999999998888 788888875
No 215
>PF02954 HTH_8: Bacterial regulatory protein, Fis family; InterPro: IPR002197 The Factor for Inversion Stimulation (FIS) protein is a regulator of bacterial functions, and binds specifically to weakly related DNA sequences [,]. It activates ribosomal RNA transcription, and is involved in upstream activation of rRNA promoters. The protein has been shown to play a role in the regulation of virulence factors in both Salmonella typhimurium and Escherichia coli []. Some of its functions include inhibition of the initiation of DNA replication from the OriC site, and promotion of Hin-mediated DNA inversion. In its C-terminal extremity, FIS encodes a helix-turn-helix (HTH) DNA- binding motif, which shares a high degree of similarity with other HTH motifs of more primitive bacterial transcriptional regulators, such as the nitrogen assimilation regulatory proteins (NtrC) from species like Azobacter, Rhodobacter and Rhizobium. This has led to speculation that both evolved from a single common ancestor []. The 3-dimensional structure of the E. coli FIS DNA-binding protein has been determined by means of X-ray diffraction to 2.0A resolution [,]. FIS is composed of four alpha-helices tightly intertwined to form a globular dimer with two protruding HTH motifs. The 24 N-terminal amino acids are poorly defined, indicating that they might act as `feelers' suitable for DNA or protein (invertase) recognition []. Other proteins belonging to this subfamily include: E. coli: atoC, hydG, ntrC, fhlA, tyrR, Rhizobium spp.: ntrC, nifA, dctD ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NTC_A 3JRH_A 3JRB_A 3IV5_A 3JRI_A 1ETQ_A 1ETW_B 1ETY_A 3JRF_A 3JRA_A ....
Probab=66.94 E-value=3.5 Score=26.55 Aligned_cols=20 Identities=35% Similarity=0.738 Sum_probs=17.3
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 028883 180 YAVKVLGIADEDLLERIRKY 199 (202)
Q Consensus 180 ~Aa~IL~~~d~~l~~kl~~~ 199 (202)
.||+.|++....|+.||++|
T Consensus 23 ~aA~~Lgisr~tL~~klkk~ 42 (42)
T PF02954_consen 23 KAARLLGISRRTLYRKLKKY 42 (42)
T ss_dssp HHHHHHTS-HHHHHHHHHHC
T ss_pred HHHHHHCCCHHHHHHHHHhC
Confidence 57899999999999999986
No 216
>PRK09982 universal stress protein UspD; Provisional
Probab=66.93 E-value=28 Score=26.89 Aligned_cols=44 Identities=7% Similarity=0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHhhcCceEEEEecCCcCchhhhh------hhccCCcEEEecCCC
Q 028883 102 ALSYALSAKERGIKIIIVGDGVEAHLSGVA------AANSQILVIRVPLLS 146 (202)
Q Consensus 102 l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv------A~~T~~PVIgVP~~~ 146 (202)
.+.+++.+++.+++.||.+.+. ..+..++ .-++..||+-||+.+
T Consensus 92 ~~~I~~~A~~~~aDLIVmG~~~-~~~~~~~~va~~V~~~s~~pVLvv~~~~ 141 (142)
T PRK09982 92 PETLLEIMQKEQCDLLVCGHHH-SFINRLMPAYRGMINKMSADLLIVPFID 141 (142)
T ss_pred HHHHHHHHHHcCCCEEEEeCCh-hHHHHHHHHHHHHHhcCCCCEEEecCCC
Confidence 4445556677889999999884 4454443 236889999999754
No 217
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=66.88 E-value=16 Score=25.90 Aligned_cols=57 Identities=19% Similarity=0.023 Sum_probs=37.9
Q ss_pred eEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 60 ~V~IimGS~---SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
.|+|+.-+. .+.+.+.+.+..|+..|+.+++... -+.+.+- .+.++..|+..+|.+.
T Consensus 3 qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~--~~~l~k~---i~~a~~~g~~~~iiiG 62 (94)
T cd00861 3 DVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR--NERPGVK---FADADLIGIPYRIVVG 62 (94)
T ss_pred EEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC--CCCcccc---hhHHHhcCCCEEEEEC
Confidence 578888776 4677788888888888988776432 2344444 4445578887655554
No 218
>PRK03202 6-phosphofructokinase; Provisional
Probab=66.69 E-value=8.8 Score=35.20 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCCcCchhhh-hhhccCCcEEEecCCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGV-AAANSQILVIRVPLLS 146 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv-vA~~T~~PVIgVP~~~ 146 (202)
+++...+.+++.++.+++.+|++-|-. .+.++ .=+...+||||+|-.-
T Consensus 78 ~~~~~~~~~~~l~~~~Id~Li~IGGd~-s~~~a~~L~e~~i~vigiPkTI 126 (320)
T PRK03202 78 DEEGRAKAIENLKKLGIDALVVIGGDG-SYMGAKRLTEHGIPVIGLPGTI 126 (320)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCChH-HHHHHHHHHhcCCcEEEecccc
Confidence 456788888888888888888875543 33332 2234589999999863
No 219
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=66.06 E-value=75 Score=26.27 Aligned_cols=80 Identities=9% Similarity=0.081 Sum_probs=46.9
Q ss_pred EEEEecCCC--CHHHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh-ccC
Q 028883 61 VGIIMESDL--DLPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-NSQ 136 (202)
Q Consensus 61 V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev~V~S-aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-~T~ 136 (202)
|++|....+ -..+.+.+.+.++++|+ .+.+.. -...+++..++++.+..++++.+|............+.- ...
T Consensus 2 i~~v~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~ 79 (271)
T cd06314 2 IAVVTNGASPFWKIAEAGVKAAGKELGV--DVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAAG 79 (271)
T ss_pred eEEEcCCCcHHHHHHHHHHHHHHHHcCC--eEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhcC
Confidence 566653222 12334455566777775 555554 334778888888888888898777765433222223221 127
Q ss_pred CcEEEe
Q 028883 137 ILVIRV 142 (202)
Q Consensus 137 ~PVIgV 142 (202)
.|||.+
T Consensus 80 ipvV~~ 85 (271)
T cd06314 80 IKLITT 85 (271)
T ss_pred CCEEEe
Confidence 788876
No 220
>PF02016 Peptidase_S66: LD-carboxypeptidase; InterPro: IPR003507 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This signature is found in the Escherichia coli microcin C7 self-immunity protein mccF and in muramoyltetrapeptide carboxypeptidase (3.4.17.13 from EC, LD-carboxypeptidase A). LD-carboxypeptidase A belongs to MEROPS peptidase family S66 (clan SS). The entry also contains uncharacterised proteins including hypothetical proteins from various bacteria archaea.; PDB: 1ZRS_A 1ZL0_B 2AUM_B 2AUN_B 3TLG_A 3TLC_A 3TLZ_B 3TLY_B 3TLE_A 3TLB_B ....
Probab=65.97 E-value=26 Score=31.21 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=49.8
Q ss_pred EEEEecC--CCCHHHHHHHHHHHHHhCCCeEEEEEc--cCC----Cc-hHHHHHHHHHhhcCceEEEEecCCcCch---h
Q 028883 61 VGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILP--PHQ----NC-KEALSYALSAKERGIKIIIVGDGVEAHL---S 128 (202)
Q Consensus 61 V~IimGS--~SD~~v~~~a~~~L~~~gi~~ev~V~S--aHR----tp-~~l~~~~~~~~~~g~~ViIa~AG~aa~L---p 128 (202)
|+||+=| ..|.+..+++.+.|+++|....+.=.. .|. ++ +|..++.+-+++..++.|++.-|+.+.. |
T Consensus 1 I~ivaPS~~~~~~~~l~~~~~~L~~~G~~v~~~~~~~~~~~~~ags~~~Ra~dL~~a~~d~~i~aI~~~rGGyg~~rlL~ 80 (284)
T PF02016_consen 1 IGIVAPSLSPIDPERLERGIKRLESWGFKVVVGPHVFKRDGYLAGSDEERAEDLNEAFADPEIDAIWCARGGYGANRLLP 80 (284)
T ss_dssp EEEE-SSHHHHCHHHHHHHHHHHHHTTEEEEE-TTTTS-BTTBSS-HHHHHHHHHHHHHSTTEEEEEES--SS-GGGGGG
T ss_pred CEEEeCCCCccCHHHHHHHHHHHHhCCCEEEECCcccccCCCcCCCHHHHHHHHHHHhcCCCCCEEEEeeccccHHHHHh
Confidence 5677666 568899999999999999865542111 111 22 4566676666777789999999996652 2
Q ss_pred ----hhhhhccCCcEEEe
Q 028883 129 ----GVAAANSQILVIRV 142 (202)
Q Consensus 129 ----gvvA~~T~~PVIgV 142 (202)
..+..+ ++++||.
T Consensus 81 ~ld~~~i~~~-pK~~iGy 97 (284)
T PF02016_consen 81 YLDYDAIRKN-PKIFIGY 97 (284)
T ss_dssp GCHHHHHHHS-G-EEEE-
T ss_pred cccccccccC-CCEEEEe
Confidence 234444 8888884
No 221
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=65.79 E-value=60 Score=25.04 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=32.4
Q ss_pred eEEEEecCCC-C---HHHHHHHHHHHHHhCCCeEEEEEccCC---------------CchHHHHHHHHHhh
Q 028883 60 IVGIIMESDL-D---LPVMNDAARTLSDFGVPYEIKILPPHQ---------------NCKEALSYALSAKE 111 (202)
Q Consensus 60 ~V~IimGS~S-D---~~v~~~a~~~L~~~gi~~ev~V~SaHR---------------tp~~l~~~~~~~~~ 111 (202)
+|.||.||.. + ...++.+.+.|++.| +|+.+...+. .++.+.++.+...+
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g--~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~ 70 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAG--AEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKE 70 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTT--EEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHH
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcC--CEEEEEeccccchhhcccccccccCCcHHHHHHHhceec
Confidence 6899999985 3 334555555566665 5667777665 35666677766655
No 222
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=65.32 E-value=53 Score=24.21 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCe-EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh--------hhhhhccCCcEEE
Q 028883 71 LPVMNDAARTLSDFGVPY-EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS--------GVAAANSQILVIR 141 (202)
Q Consensus 71 ~~v~~~a~~~L~~~gi~~-ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------gvvA~~T~~PVIg 141 (202)
....+++.+.++..|++. +..+..-.-.++.+.+++.+ .+++.|+.++-+-..|- .-+...+++||+=
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~---~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlv 149 (154)
T COG0589 73 EELLAEAKALAEAAGVPVVETEVVEGSPSAEEILELAEE---EDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLV 149 (154)
T ss_pred HHHHHHHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHH---hCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEE
Confidence 566777788888899985 66655554445777666654 46888888885443333 3345578889988
Q ss_pred ecCC
Q 028883 142 VPLL 145 (202)
Q Consensus 142 VP~~ 145 (202)
||..
T Consensus 150 v~~~ 153 (154)
T COG0589 150 VRSE 153 (154)
T ss_pred EccC
Confidence 8753
No 223
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=65.19 E-value=34 Score=32.77 Aligned_cols=68 Identities=15% Similarity=0.174 Sum_probs=43.5
Q ss_pred ceeeeeecCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCC
Q 028883 9 NSVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVP 87 (202)
Q Consensus 9 ~~~~~~~~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~ 87 (202)
|..+.+-||-|-.++.= .-|++....-+ +.....+.....+++++|+|+.+.+-.+-.++..| ..|..
T Consensus 1 mii~p~~rg~i~~~~hp-~gc~~~v~~qi---------~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~ 68 (398)
T PRK13656 1 MIIKPKIRGFICTTAHP-VGCEANVKEQI---------EYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGAD 68 (398)
T ss_pred CeecccccceeECCCCC-HHHHHHHHHHH---------HHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCe
Confidence 45667777877666544 33333333222 22213334445578999999999999998888888 77763
No 224
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=65.01 E-value=44 Score=25.26 Aligned_cols=50 Identities=22% Similarity=0.262 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh
Q 028883 76 DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (202)
Q Consensus 76 ~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp 128 (202)
++.+.++..|++++..+.-- ..| -..+++.+++.+++.||.++-+-..|.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~g-~~~--~~~I~~~a~~~~~dlIV~Gs~g~~~l~ 118 (146)
T cd01989 69 PYRCFCSRKGVQCEDVVLED-DDV--AKAIVEYVADHGITKLVMGASSDNHFS 118 (146)
T ss_pred HHHHHHhhcCCeEEEEEEeC-CcH--HHHHHHHHHHcCCCEEEEeccCCCcee
Confidence 34444455677777666521 122 334555556667887777776555443
No 225
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=64.74 E-value=37 Score=22.94 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCCC
Q 028883 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 68 ~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~~ 147 (202)
.++=|.+.++...|++.|++|+..=+. ..++...++.+.. ......|+|- +.+.
T Consensus 7 ~~~Cp~C~~ak~~L~~~~i~~~~i~i~--~~~~~~~~~~~~~----------------------~~~~~vP~v~--i~g~ 60 (75)
T cd03418 7 KPNCPYCVRAKALLDKKGVDYEEIDVD--GDPALREEMINRS----------------------GGRRTVPQIF--IGDV 60 (75)
T ss_pred CCCChHHHHHHHHHHHCCCcEEEEECC--CCHHHHHHHHHHh----------------------CCCCccCEEE--ECCE
Confidence 345599999999999999998865443 4455555554321 1222667764 3344
Q ss_pred CCChhh-HHHhhc
Q 028883 148 DWSEDD-VINSIR 159 (202)
Q Consensus 148 ~l~G~D-LlS~vq 159 (202)
.++|.| +..+-+
T Consensus 61 ~igg~~~~~~~~~ 73 (75)
T cd03418 61 HIGGCDDLYALER 73 (75)
T ss_pred EEeChHHHHHHHh
Confidence 567777 766544
No 226
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=64.71 E-value=9 Score=31.86 Aligned_cols=63 Identities=17% Similarity=0.110 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
+-+..+..|.+-| ..|...|...+.+.++.+ .+|++|+++|..+-+++-.= .-..-||-|-+.
T Consensus 48 VG~Pla~lL~~~~----atVt~~h~~T~~l~~~~~-----~ADIVVsa~G~~~~i~~~~i-k~gavVIDvG~~ 110 (160)
T PF02882_consen 48 VGKPLAMLLLNKG----ATVTICHSKTKNLQEITR-----RADIVVSAVGKPNLIKADWI-KPGAVVIDVGIN 110 (160)
T ss_dssp THHHHHHHHHHTT-----EEEEE-TTSSSHHHHHT-----TSSEEEE-SSSTT-B-GGGS--TTEEEEE--CE
T ss_pred CChHHHHHHHhCC----CeEEeccCCCCcccceee-----eccEEeeeeccccccccccc-cCCcEEEecCCc
Confidence 4556666776664 356667888888888874 47999999999887765421 122347766554
No 227
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=64.58 E-value=36 Score=30.07 Aligned_cols=58 Identities=10% Similarity=-0.046 Sum_probs=44.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~-~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
+|+|++|.-.|+-.+....+.|++ -++++++-+++-|. +...++.+.+.-. .++.+.+
T Consensus 2 ~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~--~~~~~~~~~~~i~-~~~~~~~ 60 (365)
T TIGR00236 2 KVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHR--EMLDQVLDLFHLP-PDYDLNI 60 (365)
T ss_pred eEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCH--HHHHHHHHhcCCC-CCeeeec
Confidence 699999999999999999999987 58899999999997 4555565544322 3454444
No 228
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=64.51 E-value=51 Score=28.57 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC---chhhhhhhc-cCCcEEEecCC
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA---HLSGVAAAN-SQILVIRVPLL 145 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa---~LpgvvA~~-T~~PVIgVP~~ 145 (202)
|.+.+.++.+.+++.++|..+++-.-+- +...++++.+++.|++.|-+-++..+ .+ -.+.-. +.+||||.
T Consensus 124 ~p~~l~eiv~avr~~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~-~~I~~i~~~ipVIgn--- 197 (233)
T cd02911 124 DPERLSEFIKALKETGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVDAMDPGNHADL-KKIRDISTELFIIGN--- 197 (233)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEECcCCCCCCCcH-HHHHHhcCCCEEEEE---
Confidence 6777888888888888998888765442 56778888888889987655443322 11 112222 56788872
Q ss_pred CCCCChhhHHHhhc
Q 028883 146 SEDWSEDDVINSIR 159 (202)
Q Consensus 146 ~~~l~G~DLlS~vq 159 (202)
++-.+.-|..-++.
T Consensus 198 GgI~s~eda~~~l~ 211 (233)
T cd02911 198 NSVTTIESAKEMFS 211 (233)
T ss_pred CCcCCHHHHHHHHH
Confidence 22233344444554
No 229
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=64.45 E-value=12 Score=34.13 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=31.3
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hhccCCcEEEecCCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRVPLLS 146 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~~T~~PVIgVP~~~ 146 (202)
.++...+.++++++.+++.+|++-|- ..+.+.. +-....||||+|-.-
T Consensus 76 ~~~~~~~~~~~l~~~~Id~Li~IGGd-gs~~~a~~L~e~~~i~vigiPkTI 125 (301)
T TIGR02482 76 TEEGRQKAVENLKKLGIEGLVVIGGD-GSYTGAQKLYEEGGIPVIGLPGTI 125 (301)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHhhCCCEEeecccc
Confidence 34566777777777778877776554 4443332 222579999999763
No 230
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=64.32 E-value=80 Score=25.93 Aligned_cols=68 Identities=12% Similarity=0.150 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--ccCCcEEEe
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--NSQILVIRV 142 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~T~~PVIgV 142 (202)
-....+.+.+.++++|+.+.+.... ...+...++.+.+.+++++.||....... ..+-- .-..|||.+
T Consensus 17 ~~~~~~~i~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~l~~~~vdgiii~~~~~~---~~~~~l~~~~ipvV~~ 86 (268)
T cd06277 17 YSEIYRAIEEEAKKYGYNLILKFVS--DEDEEEFELPSFLEDGKVDGIILLGGIST---EYIKEIKELGIPFVLV 86 (268)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCC--CChHHHHHHHHHHHHCCCCEEEEeCCCCh---HHHHHHhhcCCCEEEE
Confidence 3455667788888999765555443 44455566666666777887776553322 22222 235688865
No 231
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=64.23 E-value=36 Score=28.67 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCC---CchHHHHHHHHHhhcCceEEE
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPHQ---NCKEALSYALSAKERGIKIII 118 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaHR---tp~~l~~~~~~~~~~g~~ViI 118 (202)
+++.+.++.+.+++.|+++.+.+..++| +|+.+.++++.+.+-|++.|.
T Consensus 113 ~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~ 164 (265)
T cd03174 113 DLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEIS 164 (265)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 6788889999999999999999987775 788889999999888876444
No 232
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=63.83 E-value=6.1 Score=29.68 Aligned_cols=83 Identities=16% Similarity=0.296 Sum_probs=56.9
Q ss_pred EEEEecC--CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hhccC
Q 028883 61 VGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQ 136 (202)
Q Consensus 61 V~IimGS--~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~~T~ 136 (202)
|.+++|+ +|.+ .++++.+.+++.|+++++.-++.-. +.++. ..+++|+..--..-.+.-+- +....
T Consensus 2 Il~~Cg~G~sTS~-~~~ki~~~~~~~~~~~~v~~~~~~~----~~~~~-----~~~Diil~~Pqv~~~~~~i~~~~~~~~ 71 (96)
T cd05564 2 ILLVCSAGMSTSI-LVKKMKKAAEKRGIDAEIEAVPESE----LEEYI-----DDADVVLLGPQVRYMLDEVKKKAAEYG 71 (96)
T ss_pred EEEEcCCCchHHH-HHHHHHHHHHHCCCceEEEEecHHH----HHHhc-----CCCCEEEEChhHHHHHHHHHHHhccCC
Confidence 4455543 3334 6899999999999999988776532 33221 34788888777777777776 45678
Q ss_pred CcEEEecCCC-CCCChhh
Q 028883 137 ILVIRVPLLS-EDWSEDD 153 (202)
Q Consensus 137 ~PVIgVP~~~-~~l~G~D 153 (202)
.||...|+.. +.++|-.
T Consensus 72 ~pv~~I~~~~Y~~~dg~~ 89 (96)
T cd05564 72 IPVAVIDMMDYGMMNGEK 89 (96)
T ss_pred CcEEEcChHhcccCCHHH
Confidence 8999998874 3455544
No 233
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=63.67 E-value=47 Score=25.38 Aligned_cols=82 Identities=20% Similarity=0.165 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC------cEEEecCCCC
Q 028883 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI------LVIRVPLLSE 147 (202)
Q Consensus 74 ~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~------PVIgVP~~~~ 147 (202)
.++....|+..+..+++..... .+...++.+..+.+...-.|++.|+.+.|--++.++-.. |+--+|.-+
T Consensus 17 ~~~v~~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~~~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT- 92 (130)
T PF00781_consen 17 WKKVEPALRAAGIDYEVIETES---AGHAEALARILALDDYPDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGT- 92 (130)
T ss_dssp HHHHHHHHHHTTCEEEEEEESS---TTHHHHHHHHHHHTTS-SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SS-
T ss_pred HHHHHHHHHHcCCceEEEEEec---cchHHHHHHHHhhccCccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCC-
Confidence 3788899999999888877755 334444443222233324556668888888888876433 444455322
Q ss_pred CCChhhHHHhhcCCC
Q 028883 148 DWSEDDVINSIRMPS 162 (202)
Q Consensus 148 ~l~G~DLlS~vqMP~ 162 (202)
|-|+--.+..|.
T Consensus 93 ---~N~~ar~lg~~~ 104 (130)
T PF00781_consen 93 ---GNDFARSLGIPS 104 (130)
T ss_dssp ---S-HHHHHTT--S
T ss_pred ---hhHHHHHcCCCC
Confidence 234445554443
No 234
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=63.44 E-value=34 Score=35.24 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=57.0
Q ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE---------------------------------EEccCCC--c
Q 028883 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIK---------------------------------ILPPHQN--C 99 (202)
Q Consensus 55 ~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~---------------------------------V~SaHRt--p 99 (202)
+.+..+|+|++++ -|-|-|..+....-.+++....+ +.+--|. +
T Consensus 386 ~~~~~~IaIltsG-G~apGmNaairavv~~a~~~g~~v~gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LGT~R~~~~ 464 (762)
T cd00764 386 EKTNLNIAIVNVG-APAAGMNAAVRSAVRYGLAHGHRPYAIYDGFEGLAKGQIVELGWIDVGGWTGRGGSELGTKRTLPK 464 (762)
T ss_pred cccccEEEEEecC-CCchhHHHHHHHHHHHHHHCCCEEEEEecCHHHhcCCCcccCCHHHHHHHHhCCcccccccCCCcH
Confidence 3344689998866 58898888776554433321111 2233344 3
Q ss_pred hHHHHHHHHHhhcCceEEEEecCCcCchhhh--hhh------ccCCcEEEecCCC
Q 028883 100 KEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAA------NSQILVIRVPLLS 146 (202)
Q Consensus 100 ~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--vA~------~T~~PVIgVP~~~ 146 (202)
+.+.+.++.+++.+++.+|++-|-.+ +-+. ++- ...+||||+|-.-
T Consensus 465 ~~~~~i~~~l~~~~Id~LivIGGdgs-~~~a~~L~~~~~~y~~~~i~vVgIPkTI 518 (762)
T cd00764 465 KDLETIAYNFQKYGIDGLIIVGGFEA-YKGLLQLREAREQYEEFCIPMVLIPATV 518 (762)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhH-HHHHHHHHHHHhhCCCCCccEEEecccc
Confidence 57778888899999998888866544 3333 221 1459999999763
No 235
>PF01761 DHQ_synthase: 3-dehydroquinate synthase; PDB: 3OKF_A 1NVA_B 1NUA_A 1NVE_D 1NVB_B 1SG6_A 1NR5_A 1NRX_B 1NVD_A 1NVF_C ....
Probab=63.25 E-value=9.9 Score=33.88 Aligned_cols=51 Identities=25% Similarity=0.289 Sum_probs=37.6
Q ss_pred cCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhhhhc--cCCcEEEecCC
Q 028883 95 PHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAAN--SQILVIRVPLL 145 (202)
Q Consensus 95 aHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~LpgvvA~~--T~~PVIgVP~~ 145 (202)
-+|+.+.+.++.+.+.+.++ +++|++.|+ -.-|.|++|+. --.|.|-||+.
T Consensus 8 ~~Ksl~~~~~i~~~l~~~~~~R~~~iiaiGGGvv~Dl~GFaAs~y~RGi~~i~vPTT 64 (260)
T PF01761_consen 8 ESKSLETVEKIYDALLEAGLDRDDLIIAIGGGVVGDLAGFAASTYMRGIPFIQVPTT 64 (260)
T ss_dssp GGSSHHHHHHHHHHHHHTT--TTEEEEEEESHHHHHHHHHHHHHBTT--EEEEEE-S
T ss_pred ccCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHccCCceEecccc
Confidence 46788888888887766665 577777776 78899999996 48899999986
No 236
>cd00738 HGTP_anticodon HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl tRNA synthetases, which are classified as a group of class II aminoacyl-tRNA synthetases (aaRS). In aaRSs, the anticodon binding domain is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only. This domain is also found in the accessory subunit of mitochondrial polymerase gamma (Pol gamma b).
Probab=63.13 E-value=31 Score=24.11 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=37.9
Q ss_pred eEEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 60 IVGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 60 ~V~IimGS~---SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
.|.|+.-+. .+++.+.+.+..|...|+.+++... .+.+.+- .+.+++.|+..+|.+..
T Consensus 3 ~v~ii~~~~~~~~~~~~a~~~~~~Lr~~g~~v~~~~~--~~~~~k~---~~~a~~~g~~~~iiig~ 63 (94)
T cd00738 3 DVAIVPLTDPRVEAREYAQKLLNALLANGIRVLYDDR--ERKIGKK---FREADLRGVPFAVVVGE 63 (94)
T ss_pred EEEEEECCCCcHHHHHHHHHHHHHHHHCCCEEEecCC--CcCHhHH---HHHHHhCCCCEEEEECC
Confidence 467777666 6788888888899999986665332 2444444 44455678775555543
No 237
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=63.10 E-value=12 Score=34.05 Aligned_cols=67 Identities=10% Similarity=0.116 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCe-------------------------EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~-------------------------ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+...+.++|+++|+++ ...|...|...+.+.++.++ ++++|++.|...-+
T Consensus 142 Tp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~~l~~~~~~-----ADIvIsAvGk~~~i 216 (284)
T PRK14177 142 TPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQNLPSIVRQ-----ADIIVGAVGKPEFI 216 (284)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEeCCCcCcc
Confidence 4566777788888764 24777889766778877653 79999999998876
Q ss_pred hhhhhhccCCcEEEecCC
Q 028883 128 SGVAAANSQILVIRVPLL 145 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~ 145 (202)
.+=.--.-. =||-|=+.
T Consensus 217 ~~~~ik~ga-vVIDvGin 233 (284)
T PRK14177 217 KADWISEGA-VLLDAGYN 233 (284)
T ss_pred CHHHcCCCC-EEEEecCc
Confidence 543322222 27777664
No 238
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=62.78 E-value=12 Score=36.02 Aligned_cols=52 Identities=12% Similarity=0.021 Sum_probs=46.1
Q ss_pred ccCCCchHHHHHHHHHhhcCc---eEEEEecCC-cCchhhhhhhc--cCCcEEEecCC
Q 028883 94 PPHQNCKEALSYALSAKERGI---KIIIVGDGV-EAHLSGVAAAN--SQILVIRVPLL 145 (202)
Q Consensus 94 SaHRtp~~l~~~~~~~~~~g~---~ViIa~AG~-aa~LpgvvA~~--T~~PVIgVP~~ 145 (202)
-.|++.+.+.++.+.+.+.++ +++|++.|+ ..-++|++|+. --.|.|.||+.
T Consensus 215 e~~k~l~~v~~~~~~l~~~~~~R~d~viaiGGG~v~D~agf~A~~y~RGi~~i~vPTT 272 (488)
T PRK13951 215 EEVKTLEHVSRAYYELVRMDFPRGKTIAGVGGGALTDFTGFVASTFKRGVGLSFYPTT 272 (488)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCCeEEEECChHHHHHHHHHHHHHhcCCCeEecCcc
Confidence 379999999999999988888 899998888 57899999984 78899999986
No 239
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=62.55 E-value=5.2 Score=30.26 Aligned_cols=78 Identities=14% Similarity=0.175 Sum_probs=53.3
Q ss_pred CeEEEEecC--CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--c
Q 028883 59 PIVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA--N 134 (202)
Q Consensus 59 ~~V~IimGS--~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~--~ 134 (202)
.+|.+++|+ +|-+ .+++..+.+++.|+++++.=++... +.++. ..+++|+...-..-.+.-+-.- .
T Consensus 4 ~~ILl~C~~G~sSS~-l~~k~~~~~~~~gi~~~v~a~~~~~----~~~~~-----~~~Dvill~pqi~~~~~~i~~~~~~ 73 (95)
T TIGR00853 4 TNILLLCAAGMSTSL-LVNKMNKAAEEYGVPVKIAAGSYGA----AGEKL-----DDADVVLLAPQVAYMLPDLKKETDK 73 (95)
T ss_pred cEEEEECCCchhHHH-HHHHHHHHHHHCCCcEEEEEecHHH----HHhhc-----CCCCEEEECchHHHHHHHHHHHhhh
Confidence 357777664 3345 7799999999999999988776644 33332 2368888877776666666543 3
Q ss_pred cCCcEEEecCCC
Q 028883 135 SQILVIRVPLLS 146 (202)
Q Consensus 135 T~~PVIgVP~~~ 146 (202)
...||.-+|+..
T Consensus 74 ~~ipv~~I~~~~ 85 (95)
T TIGR00853 74 KGIPVEVINGAQ 85 (95)
T ss_pred cCCCEEEeChhh
Confidence 446888887753
No 240
>PF03129 HGTP_anticodon: Anticodon binding domain; InterPro: IPR004154 tRNA synthetases, or tRNA ligases are involved in protein synthesis. This domain is found in histidyl, glycyl, threonyl and prolyl tRNA synthetases [] it is probably the anticodon binding domain [].; GO: 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding; PDB: 1KOG_B 1EVL_D 1EVK_B 1QF6_A 1FYF_B 2I4O_A 2I4M_A 2I4N_A 2I4L_A 1HC7_D ....
Probab=62.36 E-value=36 Score=24.27 Aligned_cols=55 Identities=22% Similarity=0.222 Sum_probs=37.4
Q ss_pred EEEEecCC---CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883 61 VGIIMESD---LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 61 V~IimGS~---SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
|+|+.=++ .-.+.+.+....|...|+.+++.- -++++.+-. +++...|+..+|.+
T Consensus 2 v~Ii~~~~~~~~~~~~a~~l~~~L~~~gi~v~~d~--~~~~~~k~~---~~a~~~g~p~~iii 59 (94)
T PF03129_consen 2 VVIIPVGKKDEEIIEYAQELANKLRKAGIRVELDD--SDKSLGKQI---KYADKLGIPFIIII 59 (94)
T ss_dssp EEEEESSCSHHHHHHHHHHHHHHHHHTTSEEEEES--SSSTHHHHH---HHHHHTTESEEEEE
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHCCCEEEEEC--CCCchhHHH---HHHhhcCCeEEEEE
Confidence 66777666 567888999999999998666654 455554443 44556788755554
No 241
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=62.17 E-value=86 Score=27.04 Aligned_cols=71 Identities=17% Similarity=0.029 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHh-------CCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEEecCCcCchhhhhhhccCCcEEEe
Q 028883 72 PVMNDAARTLSDF-------GVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAHLSGVAAANSQILVIRV 142 (202)
Q Consensus 72 ~v~~~a~~~L~~~-------gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~aa~LpgvvA~~T~~PVIgV 142 (202)
+..+-+...+++. |.++++.+..-+-.|++..+.++++..+ ++.+||...+......--+......|+|.+
T Consensus 18 ~~~~g~~~a~~~~N~~Ggi~G~~i~lv~~D~~~~~~~~~~~~~~li~~~~V~~iig~~~s~~~~~~~~~~~~~ip~v~~ 96 (341)
T cd06341 18 GARAGADAAAGYANAAGGIAGRPIEYVWCDDQGDPASAAACARDLVEDDKVVAVVGGSSGAGGSALPYLAGAGIPVIGG 96 (341)
T ss_pred HHHHHHHHHHHHHHhcCCcCCceEEEEEecCCCChhHHHHHHHHHHHhcCceEEEecccccchhHHHHHhhcCCceecC
Confidence 4444555556666 5578888888888999999988888776 788777765433222212334566787754
No 242
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=61.55 E-value=1.4e+02 Score=27.96 Aligned_cols=123 Identities=14% Similarity=0.078 Sum_probs=76.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-eEE-EEEccCC-C-chHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC-cEEE
Q 028883 67 SDLDLPVMNDAARTLSDFGVP-YEI-KILPPHQ-N-CKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI-LVIR 141 (202)
Q Consensus 67 S~SD~~v~~~a~~~L~~~gi~-~ev-~V~SaHR-t-p~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~-PVIg 141 (202)
+.||+.-+++..+..+++==. =.+ -+.+.+- . -..++++.+.+++.|++|+=..+=..+-.+..+..+... -||=
T Consensus 138 GvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~ 217 (322)
T COG2984 138 GVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIY 217 (322)
T ss_pred ecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEE
Confidence 468888777776666553111 122 2233333 2 233556667777888888888888888888888877443 3888
Q ss_pred ecCCCCCCChhh-HH-HhhcC------------CCCCeeeEEecC---ChhhHHHHHHHHHccCCH
Q 028883 142 VPLLSEDWSEDD-VI-NSIRM------------PSHVQVASVPRN---NAKNAALYAVKVLGIADE 190 (202)
Q Consensus 142 VP~~~~~l~G~D-Ll-S~vqM------------P~GvpVatV~I~---n~~NAAl~Aa~IL~~~d~ 190 (202)
+|++.---.+.. |+ ...+- -.|- +|.+++| -|..+|..+.+||.-.+|
T Consensus 218 ~p~dn~i~s~~~~l~~~a~~~kiPli~sd~~~V~~Ga-~aA~gvdy~~~G~qtg~~v~~ILkG~~p 282 (322)
T COG2984 218 IPTDNLIVSAIESLLQVANKAKIPLIASDTSSVKEGA-LAALGVDYKDLGKQTGEMVVKILKGKKP 282 (322)
T ss_pred EecchHHHHHHHHHHHHHHHhCCCeecCCHHHHhcCc-ceeeccCHHHHHHHHHHHHHHHHcCCCc
Confidence 888753333444 22 22220 1342 4778888 589999999999985444
No 243
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=61.48 E-value=86 Score=25.39 Aligned_cols=79 Identities=8% Similarity=0.075 Sum_probs=48.9
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|+|+..+.+| ....+.+.+.++++|+.+. +...-..+++..+.++.+..++++.+|...+.....+ ++. -.-
T Consensus 2 igvv~~~~~~~~~~~~~~~i~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~ 78 (266)
T cd06282 2 VGVVLPSLANPVFAECVQGIQEEARAAGYSLL--LATTDYDAEREADAVETLLRQRVDGLILTVADAATSP-ALDLLDAE 78 (266)
T ss_pred eEEEeCCCCcchHHHHHHHHHHHHHHCCCEEE--EeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCchH-HHHHHhhC
Confidence 6777755555 3455667777888886544 4444456777778888877777888877655432222 222 234
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..||+.+
T Consensus 79 ~ipvV~~ 85 (266)
T cd06282 79 RVPYVLA 85 (266)
T ss_pred CCCEEEE
Confidence 5787765
No 244
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=61.37 E-value=86 Score=25.34 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=57.8
Q ss_pred eEEEEecCCCC----HHHHHHHHHHHHHhCCCeEEEEEcc-----------CCCchHHHHHHHHHhhcCceEEEEec---
Q 028883 60 IVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPP-----------HQNCKEALSYALSAKERGIKIIIVGD--- 121 (202)
Q Consensus 60 ~V~IimGS~SD----~~v~~~a~~~L~~~gi~~ev~V~Sa-----------HRtp~~l~~~~~~~~~~g~~ViIa~A--- 121 (202)
+|.+|.||... ...++.+.+.+++-|..++ +... ...++.+.++.+...+ ++.||.++
T Consensus 1 kil~I~gS~r~~S~t~~l~~~~~~~l~~~~~~~~--~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~--AD~iI~~sP~Y 76 (171)
T TIGR03567 1 RVLTLSGSPSTPSRSSALLRHVREALQEQGVEVD--HLSVRDLPAEDLLFARFDSPAIKAATAQVAQ--ADGVVVATPVY 76 (171)
T ss_pred CEEEEECCCCCCChHHHHHHHHHHHHHHCCCeEE--EEEecCCChHHhhhcCCCCHHHHHHHHHHHH--CCEEEEECCcc
Confidence 47889999765 5566677777777666433 2221 1235677888877766 66666654
Q ss_pred --CCcCchhhhh-----hhccCCcEEEecCCCCCC------Chhh-HHHhhcC
Q 028883 122 --GVEAHLSGVA-----AANSQILVIRVPLLSEDW------SEDD-VINSIRM 160 (202)
Q Consensus 122 --G~aa~Lpgvv-----A~~T~~PVIgVP~~~~~l------~G~D-LlS~vqM 160 (202)
++++.|=..+ ..+..+||.-+.+.+..- ..+. +++.++|
T Consensus 77 ~~sip~~LK~~iD~~~~~~l~~K~v~~~~~gg~~~~~~~~~~~l~~~l~~l~~ 129 (171)
T TIGR03567 77 KASYSGVLKALLDLLPQRALRGKVVLPIATGGSIAHLLAIDYALKPVLSALGA 129 (171)
T ss_pred cCCCCHHHHHHHHhCChhhhCCCEEEEEEcCCchhHHHHHHHHHHHHHHHcCC
Confidence 4455444444 235567887555543211 1356 7788887
No 245
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=61.30 E-value=12 Score=33.99 Aligned_cols=67 Identities=18% Similarity=0.235 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+.+.+.++|+++|++++ .+|...|+..+.+.++.++ ++++|++.|...-+
T Consensus 141 Tp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~dl~~~~k~-----ADIvIsAvGkp~~i 215 (282)
T PRK14180 141 TPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTTDLKSHTTK-----ADILIVAVGKPNFI 215 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCCCHHHHhhh-----cCEEEEccCCcCcC
Confidence 56677777888877632 3778889888888887653 79999999999887
Q ss_pred hhhhhhccCCcEEEecCC
Q 028883 128 SGVAAANSQILVIRVPLL 145 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~ 145 (202)
.+=.--.- .=||-|=+.
T Consensus 216 ~~~~vk~g-avVIDvGin 232 (282)
T PRK14180 216 TADMVKEG-AVVIDVGIN 232 (282)
T ss_pred CHHHcCCC-cEEEEeccc
Confidence 65322221 227766554
No 246
>PRK09864 putative peptidase; Provisional
Probab=61.30 E-value=1.2e+02 Score=28.24 Aligned_cols=98 Identities=6% Similarity=0.123 Sum_probs=68.1
Q ss_pred Ee--cCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEE
Q 028883 64 IM--ESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIR 141 (202)
Q Consensus 64 im--GS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIg 141 (202)
++ |.-.+-...+...++.++.||||...+.+.= ..+ ...+- ....| .+.=+|+
T Consensus 255 ~~D~~~i~~~~l~~~l~~~A~~~~Ip~Q~~~~~~g-gTD-a~~i~--~~~~G---------------------vpt~~is 309 (356)
T PRK09864 255 LFDKRYFPNQKLVAALKSCAAHNDLPLQFSTMKTG-ATD-GGRYN--VMGGG---------------------RPVVALC 309 (356)
T ss_pred EccCCccCCHHHHHHHHHHHHHcCCCceEEEcCCC-Cch-HHHHH--HhCCC---------------------CcEEEEe
Confidence 66 8888999999999999999999888766431 111 11110 00111 2223678
Q ss_pred ecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 028883 142 VPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 201 (202)
Q Consensus 142 VP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d~~l~~kl~~~~~ 201 (202)
+|+.-. ..|+.++.+..-+|+.-+...++...+++.++.+.+||+
T Consensus 310 iP~RY~---------------Hs~~e~~~~~D~e~~~~Ll~~~~~~l~~~~~~~~~~~~~ 354 (356)
T PRK09864 310 LPTRYL---------------HANSGMISKADYDALLTLIRDFLTTLTAEKVNAFSQFRQ 354 (356)
T ss_pred eccCcC---------------CCcceEeEHHHHHHHHHHHHHHHHhcchhhHHHHhhhhc
Confidence 887543 236788989999999999999888888877788888875
No 247
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=61.30 E-value=67 Score=24.03 Aligned_cols=71 Identities=17% Similarity=0.250 Sum_probs=44.6
Q ss_pred eEEEEecCCCCHHHH--HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 60 IVGIIMESDLDLPVM--NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 60 ~V~IimGS~SD~~v~--~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
+|.+++|+--=-..+ ++..+.|++.|+++++.=++. ..+..++ ..+|+||+..-. +. .....
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~----~e~~~~~-----~~~D~iv~t~~~----~~---~~~~i 67 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRV----NEIETYM-----DGVHLICTTARV----DR---SFGDI 67 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecH----HHHhhhc-----CCCCEEEECCcc----cc---ccCCC
Confidence 688888887655555 888999999999988764443 3343332 347888875532 22 12257
Q ss_pred c-EEEecCCC
Q 028883 138 L-VIRVPLLS 146 (202)
Q Consensus 138 P-VIgVP~~~ 146 (202)
| +.++|..+
T Consensus 68 p~~~~~~llt 77 (94)
T PRK10310 68 PLVHGMPFVS 77 (94)
T ss_pred CEEEEeeccc
Confidence 7 44555544
No 248
>PRK09701 D-allose transporter subunit; Provisional
Probab=61.10 E-value=1.1e+02 Score=26.47 Aligned_cols=85 Identities=13% Similarity=0.145 Sum_probs=51.8
Q ss_pred CCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--h
Q 028883 58 APIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--A 132 (202)
Q Consensus 58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A 132 (202)
...|+++.-..+| ....+.+.+.+++.|+...+.....-..+++..++++++..++++.||..+.........+ +
T Consensus 24 ~~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~ 103 (311)
T PRK09701 24 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 103 (311)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 3589999977666 2334566677778886555432222235566677777787788887777665433222222 2
Q ss_pred hccCCcEEEe
Q 028883 133 ANSQILVIRV 142 (202)
Q Consensus 133 ~~T~~PVIgV 142 (202)
-....||+.+
T Consensus 104 ~~~giPvV~~ 113 (311)
T PRK09701 104 WKKGIYLVNL 113 (311)
T ss_pred HHCCCcEEEe
Confidence 2355788876
No 249
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=60.90 E-value=49 Score=30.36 Aligned_cols=91 Identities=18% Similarity=0.224 Sum_probs=51.0
Q ss_pred CCCCCeEEEEecCCC-------CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC--
Q 028883 55 STDAPIVGIIMESDL-------DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-- 125 (202)
Q Consensus 55 ~~~~~~V~IimGS~S-------D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-- 125 (202)
+-.+++|+||+-++- |.. ..-....|+++|+.......-.| .++.+.+.++++.++|+++||+..|++.
T Consensus 156 v~r~~rv~II~TG~Ev~~G~i~D~~-~~~l~~~L~~~G~~v~~~~iv~D-d~~~I~~ai~~~~~~g~DlIItTGGtsvg~ 233 (312)
T cd03522 156 PFRPLRVGLIVTGSEVYGGRIEDKF-GPVLRARLAALGVELVEQVIVPH-DEAAIAAAIAEALEAGAELLILTGGASVDP 233 (312)
T ss_pred ecCCCEEEEEEcCCcCCCCcEEEhH-HHHHHHHHHHCCCEEEEEEEcCC-CHHHHHHHHHHHhcCCCCEEEEeCCcccCC
Confidence 334578999974331 221 22345568889986443333333 3455666666666667899999888753
Q ss_pred --chhhhhhhcc-CCcEEEecCCCC
Q 028883 126 --HLSGVAAANS-QILVIRVPLLSE 147 (202)
Q Consensus 126 --~LpgvvA~~T-~~PVIgVP~~~~ 147 (202)
..|..+...- ..=.-|+|+..+
T Consensus 234 ~D~tp~Ai~~~G~ei~~~Gv~v~PG 258 (312)
T cd03522 234 DDVTPAAIRAAGGEVIRYGMPVDPG 258 (312)
T ss_pred cchHHHHHHhcCceEEEeeecccCC
Confidence 3455544432 111335665443
No 250
>PRK14572 D-alanyl-alanine synthetase A; Provisional
Probab=60.89 E-value=10 Score=34.24 Aligned_cols=87 Identities=10% Similarity=0.057 Sum_probs=48.4
Q ss_pred eEEEEecCCCCHH-----HHHHHHHHHHHhCCCeE-EEEEcc--CCCchHH----------------HHHHH--------
Q 028883 60 IVGIIMESDLDLP-----VMNDAARTLSDFGVPYE-IKILPP--HQNCKEA----------------LSYAL-------- 107 (202)
Q Consensus 60 ~V~IimGS~SD~~-----v~~~a~~~L~~~gi~~e-v~V~Sa--HRtp~~l----------------~~~~~-------- 107 (202)
+|+|++|+.|-.- -++.+.+.|++.|..+. +.+..- +..|+.. .++.+
T Consensus 3 ~i~vl~GG~S~E~~vSl~s~~~v~~~l~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (347)
T PRK14572 3 KIAVFFGGSSTEHSISIRTGCFICATLHTMGHSVKPILLTPDGGWVVPTVYRPSIPDESGNSEDLFLEEFQKANGVSEPA 82 (347)
T ss_pred EEEEEECCCCcchHHHHHhHHHHHHHHhhcCCEEEEEEECCCCCEeeccccccccccccccccccccccccccccccccc
Confidence 7999999999754 34455666666675433 222221 1222211 00100
Q ss_pred HHhhcCce-EEEEe---cCCcCchhhhhhhccCCcEEEecCCCC
Q 028883 108 SAKERGIK-IIIVG---DGVEAHLSGVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 108 ~~~~~g~~-ViIa~---AG~aa~LpgvvA~~T~~PVIgVP~~~~ 147 (202)
.......+ ||++. -|-.++++|++. ...+|++|+++.+.
T Consensus 83 ~~~~~~~d~~f~~~hg~~gEdg~iq~~le-~~gipy~Gs~~~a~ 125 (347)
T PRK14572 83 DISQLDADIAFLGLHGGAGEDGRIQGFLD-TLGIPYTGSGVLAS 125 (347)
T ss_pred cccccCcCEEEEecCCCCCCCcHHHHHHH-HcCcCcCCCCHHHH
Confidence 00112344 66666 345778999998 45689998877654
No 251
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=60.47 E-value=36 Score=29.71 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=49.1
Q ss_pred eEEEEecCCCC-----HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCce-EEEEecCC---cCchhhh
Q 028883 60 IVGIIMESDLD-----LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIVGDGV---EAHLSGV 130 (202)
Q Consensus 60 ~V~IimGS~SD-----~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~-ViIa~AG~---aa~Lpgv 130 (202)
+|+|++|+.|= +..++.+.+.|+++|..+++ .-..+. ..+..++. ..++ ||+.+-|. .++++++
T Consensus 2 ~v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~--i~~~~~---~~~~~~~~--~~~D~v~~~~~g~~ge~~~~~~~ 74 (299)
T PRK14571 2 RVALLMGGVSREREISLRSGERVKKALEKLGYEVTV--FDVDED---FLKKVDQL--KSFDVVFNVLHGTFGEDGTLQAI 74 (299)
T ss_pred eEEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEE--EccCch---HHHHhhhc--cCCCEEEEeCCCCCCCccHHHHH
Confidence 69999999884 45678888999999886443 223321 11111111 2355 45554443 6888887
Q ss_pred hhhccCCcEEEecCCC
Q 028883 131 AAANSQILVIRVPLLS 146 (202)
Q Consensus 131 vA~~T~~PVIgVP~~~ 146 (202)
+.. ..+|++|.++.+
T Consensus 75 le~-~gip~~G~~~~a 89 (299)
T PRK14571 75 LDF-LGIRYTGSDAFS 89 (299)
T ss_pred HHH-cCCCccCCCHHH
Confidence 764 568888876553
No 252
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=60.20 E-value=32 Score=22.67 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHH
Q 028883 68 DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107 (202)
Q Consensus 68 ~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~ 107 (202)
...=|.++++.+.|++.|++|+..=++-+. +..+++.+
T Consensus 6 ~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~--~~~~~l~~ 43 (60)
T PF00462_consen 6 KPGCPYCKKAKEFLDEKGIPYEEVDVDEDE--EAREELKE 43 (60)
T ss_dssp STTSHHHHHHHHHHHHTTBEEEEEEGGGSH--HHHHHHHH
T ss_pred cCCCcCHHHHHHHHHHcCCeeeEcccccch--hHHHHHHH
Confidence 355689999999999999998776665553 44444444
No 253
>PRK15005 universal stress protein F; Provisional
Probab=59.92 E-value=72 Score=23.95 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHHhCCC---eEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEec
Q 028883 81 LSDFGVP---YEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVP 143 (202)
Q Consensus 81 L~~~gi~---~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP 143 (202)
+++++.+ ++..+. +-.|. ..+.+.+++.+++.||.++.+. .+... +.-+++.||.-||
T Consensus 76 ~~~~~~~~~~~~~~v~--~G~p~--~~I~~~a~~~~~DLIV~Gs~~~-~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 76 IKKFKLPTDRVHVHVE--EGSPK--DRILELAKKIPADMIIIASHRP-DITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHhCCCCCceEEEEe--CCCHH--HHHHHHHHHcCCCEEEEeCCCC-CchheeecchHHHHHHhCCCCEEEeC
Confidence 3445543 444443 44443 4566666677889888876643 33332 2235677777654
No 254
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=59.60 E-value=60 Score=29.81 Aligned_cols=68 Identities=13% Similarity=0.065 Sum_probs=52.7
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 64 imGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRt-p~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv 131 (202)
|.-+.+|.....+..+..++.|....+.+.-+||. |+.+.++++.+++-|++.|-.+-=.-..+|--+
T Consensus 107 i~~~~~e~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 175 (337)
T PRK08195 107 VATHCTEADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDV 175 (337)
T ss_pred EEEecchHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHH
Confidence 33478888999999999999999999999999987 688899999998888876544443344455444
No 255
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=59.56 E-value=75 Score=27.39 Aligned_cols=86 Identities=13% Similarity=0.099 Sum_probs=56.5
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHH----HHh--CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh
Q 028883 56 TDAPIVGIIMESDLDLPVMNDAARTL----SDF--GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (202)
Q Consensus 56 ~~~~~V~IimGS~SD~~v~~~a~~~L----~~~--gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg 129 (202)
++..+|++|.|-.. |.+.+-..-. +.. ++.+....++-.-.|++-.+.++.+..+|++||.+.+ ..++.
T Consensus 118 t~t~kVG~I~g~~~--~~~~~~~~gF~~G~~~~~p~~~v~~~~~g~~~D~~~a~~~a~~l~~~G~DvI~~~~---~~~g~ 192 (258)
T cd06353 118 TKTNKVGYVAAFPI--PEVVRGINAFALGARSVNPDATVKVIWTGSWFDPAKEKEAALALIDQGADVIYQHT---DSPGV 192 (258)
T ss_pred hcCCcEEEEcCccc--HHHHHHHHHHHHHHHHHCCCcEEEEEEecCCCCcHHHHHHHHHHHHCCCcEEEecC---CChHH
Confidence 34578999988754 4444333222 222 2234556677788899999999999899999999988 33433
Q ss_pred hhhh-ccCCcEEEecCCC
Q 028883 130 VAAA-NSQILVIRVPLLS 146 (202)
Q Consensus 130 vvA~-~T~~PVIgVP~~~ 146 (202)
+-|+ ....++||+-..-
T Consensus 193 ~~aa~~~g~~~IG~d~dq 210 (258)
T cd06353 193 IQAAEEKGVYAIGYVSDM 210 (258)
T ss_pred HHHHHHhCCEEEeeccch
Confidence 3233 3568999986543
No 256
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=59.51 E-value=30 Score=28.75 Aligned_cols=118 Identities=19% Similarity=0.189 Sum_probs=74.9
Q ss_pred CCCCeEEEEecCCCCH---HHHHHHHHHHHHhCCC----eEEEEEccCCCchHHHHHHHHHhhcCceEEEEec----CCc
Q 028883 56 TDAPIVGIIMESDLDL---PVMNDAARTLSDFGVP----YEIKILPPHQNCKEALSYALSAKERGIKIIIVGD----GVE 124 (202)
Q Consensus 56 ~~~~~V~IimGS~SD~---~v~~~a~~~L~~~gi~----~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A----G~a 124 (202)
.+..+|+||.+.-.+. .-.+.|.+.|+++|++ ..+.|-++.=.|-....++++ +.++.+|+.. |..
T Consensus 10 ~~~~riaIV~s~~n~~i~~~l~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~---~~~DavIalG~VIrG~T 86 (154)
T PRK00061 10 AKGLRIGIVVARFNDFITDALLEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAES---GKYDAVIALGAVIRGET 86 (154)
T ss_pred CCCCEEEEEEecCcHHHHHHHHHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHc---CCCCEEEEEeeEEcCCC
Confidence 3447999999999988 7788999999999975 235678888777777777643 4578777654 555
Q ss_pred Cchhhh----------hhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHcc
Q 028883 125 AHLSGV----------AAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI 187 (202)
Q Consensus 125 a~Lpgv----------vA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~ 187 (202)
-|--=+ ++=.+.+||+.-=....+ ++ -+.=. | .=..|.|..||..|.+++.+
T Consensus 87 ~H~e~V~~~v~~gl~~v~l~~~~PV~~GVLt~~~---~eQa~~R~----~----~~~~nkG~eaa~aal~m~~l 149 (154)
T PRK00061 87 PHFDYVANEVAKGLADVSLETGVPVGFGVLTTDT---IEQAIERA----G----TKAGNKGAEAALAALEMANL 149 (154)
T ss_pred chHHHHHHHHHHHHHHHHhccCCCEEEEecCCCC---HHHHHHHh----C----ccccccHHHHHHHHHHHHHH
Confidence 552211 112377777754333221 11 22111 1 01126888899999888854
No 257
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=58.93 E-value=1e+02 Score=25.40 Aligned_cols=80 Identities=9% Similarity=0.073 Sum_probs=44.4
Q ss_pred CeEEEEecC-------CCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh
Q 028883 59 PIVGIIMES-------DLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (202)
Q Consensus 59 ~~V~IimGS-------~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp 128 (202)
..|+||+-+ .+| ....+.+.+.++++|+...+....-+ ...++.+....++.+.||....... .
T Consensus 4 ~~i~vi~p~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~v~~~~~~----~~~~~~~~l~~~~~dgiii~~~~~~--~ 77 (275)
T cd06295 4 DTIALVVPEPHERDQSFSDPFFLSLLGGIADALAERGYDLLLSFVSSP----DRDWLARYLASGRADGVILIGQHDQ--D 77 (275)
T ss_pred eEEEEEecCccccccccCCchHHHHHHHHHHHHHHcCCEEEEEeCCch----hHHHHHHHHHhCCCCEEEEeCCCCC--h
Confidence 578999864 222 23455678888889876655432212 2334444444566887776543222 1
Q ss_pred hhhhh--ccCCcEEEecC
Q 028883 129 GVAAA--NSQILVIRVPL 144 (202)
Q Consensus 129 gvvA~--~T~~PVIgVP~ 144 (202)
..+.- ....||+.+-.
T Consensus 78 ~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 78 PLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHHhCCCCEEEECC
Confidence 22222 24689987654
No 258
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=58.67 E-value=15 Score=33.60 Aligned_cols=67 Identities=10% Similarity=0.151 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhCCCe-------------------------EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPY-------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~-------------------------ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+.+.+.++|+++|+++ ..+|...|.....+.++.++ ++++|+++|...-+
T Consensus 143 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T~~l~~~~~~-----ADIvVsAvGkp~~i 217 (294)
T PRK14187 143 TPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSATRDLADYCSK-----ADILVAAVGIPNFV 217 (294)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCcc
Confidence 5667788888888874 24788889888888888754 79999999998876
Q ss_pred hhhhhhccCCcEEEecCC
Q 028883 128 SGVAAANSQILVIRVPLL 145 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~ 145 (202)
.+=.--.- .=||-|=+.
T Consensus 218 ~~~~ik~g-aiVIDVGin 234 (294)
T PRK14187 218 KYSWIKKG-AIVIDVGIN 234 (294)
T ss_pred CHHHcCCC-CEEEEeccc
Confidence 65332222 227776443
No 259
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=58.51 E-value=1e+02 Score=25.28 Aligned_cols=59 Identities=14% Similarity=0.164 Sum_probs=40.8
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
|+||.-+.+| ..+.+.+.+.++++|+.+.+ ...+..++.-.++++.+..++++.||..+
T Consensus 2 igvi~p~~~~~~~~~~~~g~~~~a~~~g~~~~~--~~~~~~~~~~~~~i~~~~~~~vdgii~~~ 63 (268)
T cd06270 2 IGLVVSDLDGPFFGPLLSGVESVARKAGKHLII--TAGHHSAEKEREAIEFLLERRCDALILHS 63 (268)
T ss_pred EEEEEccccCcchHHHHHHHHHHHHHCCCEEEE--EeCCCchHHHHHHHHHHHHcCCCEEEEec
Confidence 5666655444 24556677778889876554 44455677777888888888899888764
No 260
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=58.28 E-value=17 Score=34.03 Aligned_cols=48 Identities=23% Similarity=0.178 Sum_probs=35.7
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhhhccCCcEEEecCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
+++-....++++++.|++.+|++-|- |.+=+-.++-.-.+||||+|=.
T Consensus 79 ~~e~~~~~~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkT 127 (347)
T COG0205 79 TEEGRKVAAENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKT 127 (347)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCC
Confidence 45556677788889999877777553 5555566777777999999965
No 261
>PF01522 Polysacc_deac_1: Polysaccharide deacetylase; InterPro: IPR002509 This domain is found in polysaccharide deacetylase. This family of polysaccharide deacetylases includes NodB (nodulation protein B from Rhizobium) which is a chitooligosaccharide deacetylase []. It also includes chitin deacetylase from yeast [], and endoxylanases which hydrolyses glucosidic bonds in xylan [].; GO: 0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, 0005975 carbohydrate metabolic process; PDB: 2IW0_A 2CC0_B 2VYO_A 2J13_A 2C71_A 2C79_A 1W1A_1 1W1B_1 1W17_A 1NY1_B ....
Probab=58.22 E-value=32 Score=25.20 Aligned_cols=60 Identities=12% Similarity=0.063 Sum_probs=40.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
+...+++=-+-.......+..+|+++|++..+.|++-+ .++-.+.++++.++|.+ |+.=|
T Consensus 5 ~~~v~ltfDdg~~~~~~~~~~~l~~~~i~at~fv~~~~--~~~~~~~l~~l~~~G~e--i~~H~ 64 (123)
T PF01522_consen 5 KKSVALTFDDGYRDNYDRLLPLLKKYGIPATFFVIGSW--VERYPDQLRELAAAGHE--IGNHG 64 (123)
T ss_dssp SSEEEEEEESHCHTHHHHHHHHHHHTT--EEEEE-HHH--HHHHHHHHHHHHHTT-E--EEEE-
T ss_pred CCEEEEEEecCchhhHHHHHHHHHhcccceeeeecccc--cccccccchhHHHHHHH--HHhcC
Confidence 34555665666678889999999999999999999875 56666777777788844 34444
No 262
>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th
Probab=58.16 E-value=99 Score=24.99 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=45.7
Q ss_pred HHHHHHHHHHH----hCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEEecCCcCch-hhhhhhccCCcEEEecC
Q 028883 73 VMNDAARTLSD----FGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEAHL-SGVAAANSQILVIRVPL 144 (202)
Q Consensus 73 v~~~a~~~L~~----~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~aa~L-pgvvA~~T~~PVIgVP~ 144 (202)
.++-+.+.+++ .|.++++.+....-.|++..+.++++..+ ++++||......... -.-++.....|+|..-.
T Consensus 22 ~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~~~~~~~~~~~~~~iP~i~~~~ 99 (299)
T cd04509 22 GAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSGVALAVAPVAEALKIPLISPGA 99 (299)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcHHHHHHHHHHhhCCceEEeccC
Confidence 34444444443 35667888888877888988888888776 788877654432222 11133446789998644
No 263
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=57.47 E-value=17 Score=33.27 Aligned_cols=67 Identities=19% Similarity=0.133 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCe-----------------------------EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 73 VMNDAARTLSDFGVPY-----------------------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~-----------------------------ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
+...+.++|+.+|+++ .-+|...|+....+.++.++ ++++|+++|.
T Consensus 144 Tp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T~~l~~~~~~-----ADIvVsAvGk 218 (297)
T PRK14168 144 TPAGIQEMLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRSKNLARHCQR-----ADILIVAAGV 218 (297)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCCcCHHHHHhh-----CCEEEEecCC
Confidence 4566777778887763 24677789877778887754 7999999999
Q ss_pred cCchhhhhhhccCCcEEEecCC
Q 028883 124 EAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 124 aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
..-+.+=.=-.-. =||-|=+.
T Consensus 219 p~~i~~~~ik~ga-vVIDvGin 239 (297)
T PRK14168 219 PNLVKPEWIKPGA-TVIDVGVN 239 (297)
T ss_pred cCccCHHHcCCCC-EEEecCCC
Confidence 8876543222111 27776443
No 264
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=57.43 E-value=16 Score=33.55 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhhcCceEEEEecCCcCchhh-hhh-----hccCCcEEEecCC
Q 028883 100 KEALSYALSAKERGIKIIIVGDGVEAHLSG-VAA-----ANSQILVIRVPLL 145 (202)
Q Consensus 100 ~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA-----~~T~~PVIgVP~~ 145 (202)
+...+.++..++.+++.+|++-|-...-.. .++ -....||||+|-.
T Consensus 79 ~~~~~~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkT 130 (338)
T cd00363 79 EGRAKAAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGT 130 (338)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeec
Confidence 344555555555556555555443222221 111 1247999999975
No 265
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=57.18 E-value=1.2e+02 Score=25.50 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=40.5
Q ss_pred eEEEEecCCCCHHH----HHHHHHHHHHhCCCeEEEEEccCC--CchHHHHHHHHHhhcCceEEEEecC
Q 028883 60 IVGIIMESDLDLPV----MNDAARTLSDFGVPYEIKILPPHQ--NCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 60 ~V~IimGS~SD~~v----~~~a~~~L~~~gi~~ev~V~SaHR--tp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
+|+||....++-++ .+.+.+.|+++|+.+.+.....+. .+++-.++++++..++++.||....
T Consensus 1 ~Igvi~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIv~~~ 69 (280)
T cd06303 1 KIAVIYPGQQISDYWVRNIASFTARLEELNIPYELTQFSSRPGIDHRLQSQQLNEALQSKPDYLIFTLD 69 (280)
T ss_pred CeeEEecCccHHHHHHHHHHHHHHHHHHcCCcEEEEEeccCcccCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 36777765322233 345566677888766665444333 5677778888888888998887654
No 266
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=56.80 E-value=16 Score=34.58 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+.+.+.++|+.+|++++ -+|...|.....+.++.++ +||+|+++|...-+
T Consensus 214 Tp~avielL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~nl~~~~r~-----ADIVIsAvGkp~~i 288 (364)
T PLN02616 214 TPKGCIELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTKNPEEITRE-----ADIIISAVGQPNMV 288 (364)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcC
Confidence 45667888888888743 4677789888888888754 79999999998876
Q ss_pred hhhhhhccCCcEEEecCC
Q 028883 128 SGVAAANSQILVIRVPLL 145 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~ 145 (202)
.+=.--.- .=||-|=+.
T Consensus 289 ~~d~vK~G-AvVIDVGIn 305 (364)
T PLN02616 289 RGSWIKPG-AVVIDVGIN 305 (364)
T ss_pred CHHHcCCC-CEEEecccc
Confidence 54322211 126666554
No 267
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=56.74 E-value=38 Score=30.82 Aligned_cols=54 Identities=13% Similarity=0.145 Sum_probs=43.7
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.|-. +.+...+.++++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (284)
T PRK14190 34 GLAVILVGDDPASHSYVRGKKKAAEKVGIYSELYEFPADITEEELLALIDRLNAD 88 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46777778776554 4555688889999999999999999999999999988654
No 268
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=56.56 E-value=30 Score=31.60 Aligned_cols=44 Identities=14% Similarity=0.102 Sum_probs=31.4
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHH
Q 028883 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~ 107 (202)
.++++||+|++| .+..++++.|..-|. +|.=++|+.++.++..+
T Consensus 34 ~~~~~vVTGans--GIG~eta~~La~~Ga----~Vv~~~R~~~~~~~~~~ 77 (314)
T KOG1208|consen 34 SGKVALVTGATS--GIGFETARELALRGA----HVVLACRNEERGEEAKE 77 (314)
T ss_pred CCcEEEEECCCC--chHHHHHHHHHhCCC----EEEEEeCCHHHHHHHHH
Confidence 358999999999 888889998888884 34445566544444433
No 269
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=56.50 E-value=93 Score=27.36 Aligned_cols=93 Identities=13% Similarity=0.120 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc----hhh--hhhhcc-CCcEEEe
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH----LSG--VAAANS-QILVIRV 142 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~----Lpg--vvA~~T-~~PVIgV 142 (202)
|.+.+.+..+.+.+.++|..+++-- +-......++++.+++.|++.|.+=.+..+. +-- -+.-.+ .+||||.
T Consensus 119 dp~~l~~iv~av~~~~~PVsvKiR~-~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN 197 (231)
T TIGR00736 119 NKELLKEFLTKMKELNKPIFVKIRG-NCIPLDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN 197 (231)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEeCC-CCCcchHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE
Confidence 8888999998888889998877653 3345577789998999999866554444322 111 122233 4888882
Q ss_pred cCCCCCCChhhHHHhhcC-CCCCee
Q 028883 143 PLLSEDWSEDDVINSIRM-PSHVQV 166 (202)
Q Consensus 143 P~~~~~l~G~DLlS~vqM-P~GvpV 166 (202)
++-.+.-|..-|+.. ..||-+
T Consensus 198 ---GgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 198 ---NSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred ---CCcCCHHHHHHHHHhCCCeEEE
Confidence 333344446666653 344433
No 270
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=56.43 E-value=39 Score=33.42 Aligned_cols=85 Identities=18% Similarity=0.127 Sum_probs=64.5
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
.--|.||.+-+.=+|--.||...++.+|+|+.+-+-=.-|..........+..+.| +.+-...-
T Consensus 80 DIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~g----------------l~~E~~gg 143 (509)
T COG0532 80 DIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYG----------------LVPEEWGG 143 (509)
T ss_pred cEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHHHHHHHHcC----------------CCHhhcCC
Confidence 34588889999999999999999999999999988877777766666666555532 22222222
Q ss_pred cEEEecCCCCCCChhh-HHHhh
Q 028883 138 LVIRVPLLSEDWSEDD-VINSI 158 (202)
Q Consensus 138 PVIgVP~~~~~l~G~D-LlS~v 158 (202)
=|+-||+|...-.|+| ||-++
T Consensus 144 ~v~~VpvSA~tg~Gi~eLL~~i 165 (509)
T COG0532 144 DVIFVPVSAKTGEGIDELLELI 165 (509)
T ss_pred ceEEEEeeccCCCCHHHHHHHH
Confidence 2899999988788998 87765
No 271
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=56.11 E-value=19 Score=34.76 Aligned_cols=55 Identities=24% Similarity=0.317 Sum_probs=40.4
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--h-----ccCCcEEEecCCC
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--A-----NSQILVIRVPLLS 146 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~-----~T~~PVIgVP~~~ 146 (202)
.+.+--|.++...+.++.+++.+++.+|++-| .+.+-|... - ...+||||+|-.-
T Consensus 150 TiLGTsR~~~~~~~iv~~L~~~~I~~L~vIGG-dgT~~gA~~l~ee~~~~g~~I~VIGIPKTI 211 (443)
T PRK06830 150 TILGSSRGPQDPEEIVDTLERMNINILFVIGG-DGTLRGASAIAEEIERRGLKISVIGIPKTI 211 (443)
T ss_pred ccccCCCCchhHHHHHHHHHHcCCCEEEEeCC-chHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 45666788999999999999999998888855 444444322 1 2458999999763
No 272
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=56.09 E-value=1.3e+02 Score=25.58 Aligned_cols=80 Identities=14% Similarity=0.109 Sum_probs=46.7
Q ss_pred EEEecCCCCH---HHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hhcc
Q 028883 62 GIIMESDLDL---PVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANS 135 (202)
Q Consensus 62 ~IimGS~SD~---~v~~~a~~~L~~~gi~~ev~V~S-aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~~T 135 (202)
++|..+.+|. .+.+.+.+.++++|. +.+.+.. ..-.+++..++++.+.+++++.||...-....+-..+ +...
T Consensus 2 gvi~~~~~~~f~~~~~~gi~~~a~~~g~-~~~i~~~~~~~d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~ 80 (302)
T TIGR02637 2 GLVVKSLGNPFFEAANKGAEEAAKELGS-VYIIYTGPTGTTAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKR 80 (302)
T ss_pred EEEeccCCCHHHHHHHHHHHHHHHHhCC-eeEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHC
Confidence 4555444441 123455566777884 3343333 3346788888888888888987777654333333333 2234
Q ss_pred CCcEEEe
Q 028883 136 QILVIRV 142 (202)
Q Consensus 136 ~~PVIgV 142 (202)
..|||.+
T Consensus 81 giPvV~~ 87 (302)
T TIGR02637 81 GIKVVTW 87 (302)
T ss_pred CCEEEEe
Confidence 6798876
No 273
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=55.96 E-value=21 Score=34.62 Aligned_cols=55 Identities=18% Similarity=0.185 Sum_probs=40.0
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hh-----ccCCcEEEecCCC
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AA-----NSQILVIRVPLLS 146 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~-----~T~~PVIgVP~~~ 146 (202)
.+.+--|.+....++++..++.+++.+|++-|- +.+-|.. +- .-.+||||+|-.-
T Consensus 154 TiLGTSR~~~~~~~iv~~L~~~~I~~L~vIGGd-gT~~~A~~L~ee~~~~g~~I~VIGIPKTI 215 (459)
T PTZ00286 154 TILGSSRGGFDPKVMVDTLIRHGINILFTLGGD-GTHRGALAIYKELRRRKLNISVVGIPKTI 215 (459)
T ss_pred ceeccCCChhhHHHHHHHHHHcCCCEEEEeCCc-hHHHHHHHHHHHHHHhCCCceEEEecccc
Confidence 456667888899999999999999988888554 4443332 22 1469999999763
No 274
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=55.91 E-value=32 Score=29.66 Aligned_cols=72 Identities=14% Similarity=0.100 Sum_probs=51.5
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhh--------hccCCcEEEecC
Q 028883 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAA--------ANSQILVIRVPL 144 (202)
Q Consensus 74 ~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA--------~~T~~PVIgVP~ 144 (202)
.+|..+.-+..|.+.|+. =+|||.+|.+.+.+.+++.|++.+.....- +..+||.=. |.-.--|+=||.
T Consensus 20 p~eiveLa~~~~A~iEVN--LFyRT~eR~~~I~~~L~~~Ga~~vlG~~~d~~~~ip~L~~~R~~v~~~GIy~ADVVLVPL 97 (178)
T PF02006_consen 20 PEEIVELAKATGAKIEVN--LFYRTEERVEKIAELLREHGAEEVLGVNPDASERIPGLDHERAKVSKEGIYSADVVLVPL 97 (178)
T ss_pred hHHHHHHHHHhCCCEEEE--cccCCHHHHHHHHHHHHHcCCCEeeccCCcccccCCCCCCccceECcccceeccEEEecc
Confidence 467777778888876655 489999999999999999998755544221 346776543 234456888998
Q ss_pred CCC
Q 028883 145 LSE 147 (202)
Q Consensus 145 ~~~ 147 (202)
..+
T Consensus 98 EDG 100 (178)
T PF02006_consen 98 EDG 100 (178)
T ss_pred CCC
Confidence 754
No 275
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=55.84 E-value=42 Score=34.42 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=55.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE---------------------------------EEEccCCCc--hHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI---------------------------------KILPPHQNC--KEAL 103 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev---------------------------------~V~SaHRtp--~~l~ 103 (202)
.+|+|++++- |-|-|..+...+-++.+.+.. .+.+--|.+ +.+.
T Consensus 390 ~rIaIltsGG-~apGmNaair~vv~~a~~~g~~V~Gi~~G~~GL~~~~~~~l~~~~v~~~~~~GGt~LgtsR~~~~~~~~ 468 (745)
T TIGR02478 390 LRIAIIHVGA-PAGGMNAATRSAVRYAIARGHTVIAIHNGFSGLARGDVRELTWSDVEGWVGEGGSELGTNRELPGKDLG 468 (745)
T ss_pred eEEEEEecCC-CchhHHHHHHHHHHHHHhCCCEEEEEecChhhhccCCeecCCHHHHHHHHhcCCcccccCCCCchhHHH
Confidence 5799888765 789998877655433221110 234445653 5678
Q ss_pred HHHHHHhhcCceEEEEecCCcCchhhhh--hh------ccCCcEEEecCCC
Q 028883 104 SYALSAKERGIKIIIVGDGVEAHLSGVA--AA------NSQILVIRVPLLS 146 (202)
Q Consensus 104 ~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~------~T~~PVIgVP~~~ 146 (202)
+.++..++.+++.+|++-|-. .+-+.. +- ....||||||-.-
T Consensus 469 ~i~~~l~~~~Id~LivIGGdg-s~~~a~~L~~~~~~~~~~~i~vvgIPkTI 518 (745)
T TIGR02478 469 MIAYYFQKHKIDGLLIIGGFE-AFEALLQLEQAREKYPAFRIPMVVIPATI 518 (745)
T ss_pred HHHHHHHHcCCCEEEEeCChH-HHHHHHHHHHHHhhCCCCCccEEEecccc
Confidence 888999999999888886655 333332 21 1469999999763
No 276
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=55.76 E-value=52 Score=29.54 Aligned_cols=67 Identities=15% Similarity=0.081 Sum_probs=47.4
Q ss_pred eEEEEecCCC----CHHHHHHHHHHHHHhCCCeEEEEEc-------cCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883 60 IVGIIMESDL----DLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (202)
Q Consensus 60 ~V~IimGS~S----D~~v~~~a~~~L~~~gi~~ev~V~S-------aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~ 126 (202)
+|+||+=|.. +.+..+.+.+.|+.+|....+.=.. +.---+|..++.+-+.+..++.|+++-|+.++
T Consensus 2 ~I~ivAPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~g~ 79 (308)
T cd07062 2 TIAVVSPSSGIPGELPHRLERAKKRLENLGFEVVEGPNALKGDKYLSASPEERAEELMAAFADPSIKAIIPTIGGDDS 79 (308)
T ss_pred eEEEEeCCCCCcccCHHHHHHHHHHHHhCCCEEEEecccccccccccCCHHHHHHHHHHHhcCCCCCEEEECCcccCH
Confidence 5777776653 2678899999999999865442111 11234577778777777788999999999654
No 277
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=55.65 E-value=81 Score=27.07 Aligned_cols=79 Identities=18% Similarity=-0.029 Sum_probs=0.0
Q ss_pred eEEEEecCCCCHHHHH-HHHHHHHHhCCCeEEEEEc----------------cCCCc--------------------hHH
Q 028883 60 IVGIIMESDLDLPVMN-DAARTLSDFGVPYEIKILP----------------PHQNC--------------------KEA 102 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~-~a~~~L~~~gi~~ev~V~S----------------aHRtp--------------------~~l 102 (202)
++.|++|+.+---+.- ..++.|.+.| +|+.|++ .|+.+ ..+
T Consensus 2 ~i~~~~g~~~g~~~~~~~La~~L~~~g--~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 79 (348)
T TIGR01133 2 KVVLAAGGTGGHIFPALAVAEELIKRG--VEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLLKAV 79 (348)
T ss_pred eEEEEeCccHHHHhHHHHHHHHHHhCC--CEEEEEeCCCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEE
Q 028883 103 LSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI 140 (202)
Q Consensus 103 ~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVI 140 (202)
.++.+-.++...+++|+..+..+.++...+-.+..|+|
T Consensus 80 ~~l~~~i~~~~pDvVi~~~~~~~~~~~~~~~~~~~p~v 117 (348)
T TIGR01133 80 FQARRILKKFKPDAVIGFGGYVSGPAGLAAKLLGIPLF 117 (348)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccHHHHHHHHHcCCCEE
No 278
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=55.50 E-value=69 Score=29.42 Aligned_cols=70 Identities=13% Similarity=0.079 Sum_probs=52.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRt-p~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv 131 (202)
|-|.+ +.+|.+..++..+..+++|....+.+.-+||. |+++.++++.+++-|++.|-.+-=.-..+|--+
T Consensus 104 iri~~-~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v 174 (333)
T TIGR03217 104 VRVAT-HCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDV 174 (333)
T ss_pred EEEEe-ccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHH
Confidence 44444 67788899999999999999888888888876 478888999998888876544443344455443
No 279
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=55.37 E-value=19 Score=32.13 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=33.7
Q ss_pred EEEEEccCCCchHHHHHH-----HHHhhcCce-EEEEecCCcCchhhhhhhccCCcEEE
Q 028883 89 EIKILPPHQNCKEALSYA-----LSAKERGIK-IIIVGDGVEAHLSGVAAANSQILVIR 141 (202)
Q Consensus 89 ev~V~SaHRtp~~l~~~~-----~~~~~~g~~-ViIa~AG~aa~LpgvvA~~T~~PVIg 141 (202)
++.|...|..|++.+..+ +..++.|.+ |++.+|||+ +|.-.+.-.+..|||.
T Consensus 145 dl~vL~l~~~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms-~la~~Lq~~~gvPVID 202 (230)
T COG4126 145 DLPVLALEGPPEEAEALLVIEAAEALKEDGAEAIILGCAGMS-DLADQLQKAFGVPVID 202 (230)
T ss_pred CCCcccccCChHHHHHHHHHHHHHHhhhcCCCEEEEcCccHH-HHHHHHHHHhCCCccc
Confidence 345777788777766533 444567776 555666665 4577777777777773
No 280
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=55.28 E-value=1.2e+02 Score=24.91 Aligned_cols=79 Identities=11% Similarity=0.140 Sum_probs=48.2
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hcc
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANS 135 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T 135 (202)
|+|++-..++ ....+.+.+.++++|.. +.+......+++..++++.+.+.+++-||...-.... + .+. -..
T Consensus 2 igvi~p~~~~~~~~~~~~gi~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~~~~~-~-~~~~~~~~ 77 (265)
T cd06285 2 IGVLVPRLTDTVMATMYEGIEEAAAERGYS--TFVANTGDNPDAQRRAIEMLLDRRVDGLILGDARSDD-H-FLDELTRR 77 (265)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCh-H-HHHHHHHc
Confidence 6777754333 23445667777888865 4556667788888888888888888866654322221 1 222 224
Q ss_pred CCcEEEec
Q 028883 136 QILVIRVP 143 (202)
Q Consensus 136 ~~PVIgVP 143 (202)
..||+-+=
T Consensus 78 ~iPvv~~~ 85 (265)
T cd06285 78 GVPFVLVL 85 (265)
T ss_pred CCCEEEEc
Confidence 56887653
No 281
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=55.26 E-value=86 Score=29.98 Aligned_cols=85 Identities=16% Similarity=0.048 Sum_probs=57.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhC-CCeEEEEEccCCCchHHHHHHHHHhhc-------------------------
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFG-VPYEIKILPPHQNCKEALSYALSAKER------------------------- 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~g-i~~ev~V~SaHRtp~~l~~~~~~~~~~------------------------- 112 (202)
-+|.+|.|---|+--|......|++-+ +++-+-+.+-||..+-+..|.+.++-+
T Consensus 4 ~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~i~~pdy~L~i~~~~~tl~~~t~~~i~~ 83 (383)
T COG0381 4 LKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFGIRKPDYDLNIMKPGQTLGEITGNIIEG 83 (383)
T ss_pred eEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhCCCCCCcchhccccCCCHHHHHHHHHHH
Confidence 467888888888877777777777776 777777788888655555555444332
Q ss_pred --------CceEEEEecCCcCchhhh-hhhccCCcEEEec
Q 028883 113 --------GIKIIIVGDGVEAHLSGV-AAANSQILVIRVP 143 (202)
Q Consensus 113 --------g~~ViIa~AG~aa~Lpgv-vA~~T~~PVIgVP 143 (202)
..+++++=.=....|+|. +|.....||-.|=
T Consensus 84 ~~~vl~~~kPD~VlVhGDT~t~lA~alaa~~~~IpV~HvE 123 (383)
T COG0381 84 LSKVLEEEKPDLVLVHGDTNTTLAGALAAFYLKIPVGHVE 123 (383)
T ss_pred HHHHHHhhCCCEEEEeCCcchHHHHHHHHHHhCCceEEEe
Confidence 235556555567778844 4456888988764
No 282
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=55.21 E-value=1.7e+02 Score=28.26 Aligned_cols=134 Identities=11% Similarity=0.187 Sum_probs=75.4
Q ss_pred CeEEEEecCCC-----CHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHH--HHHHH---HhhcCceEEEEecCCcC
Q 028883 59 PIVGIIMESDL-----DLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEAL--SYALS---AKERGIKIIIVGDGVEA 125 (202)
Q Consensus 59 ~~V~IimGS~S-----D~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~--~~~~~---~~~~g~~ViIa~AG~aa 125 (202)
+.|.|-+||.. +.+..+.+.+.++.++..+-.....- +..|+.+. +++-+ .....+++||.=+|...
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s 376 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHKNVKAFVTQGGVQS 376 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCCCCCEEEecCCccc
Confidence 67888899853 45688889999999887543333321 13344443 22211 11234789999877655
Q ss_pred chhhhhhhccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHcc-CCHHHHHHHHHHHh
Q 028883 126 HLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI-ADEDLLERIRKYVE 201 (202)
Q Consensus 126 ~LpgvvA~~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~-~d~~l~~kl~~~~~ 201 (202)
-.-++ ..-+|+|++|.......- ..-+.+ .|+.+. +.. +..++..+...|-.+ .|+.++++.++.++
T Consensus 377 ~~Eal---~~GvP~v~iP~~~DQ~~N--a~rv~~--~G~G~~-l~~-~~~t~~~l~~ai~~vl~~~~y~~~a~~ls~ 444 (507)
T PHA03392 377 TDEAI---DALVPMVGLPMMGDQFYN--TNKYVE--LGIGRA-LDT-VTVSAAQLVLAIVDVIENPKYRKNLKELRH 444 (507)
T ss_pred HHHHH---HcCCCEEECCCCccHHHH--HHHHHH--cCcEEE-ecc-CCcCHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44433 467899999997642211 222233 576532 222 233444444433333 56888887766543
No 283
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=55.11 E-value=71 Score=22.42 Aligned_cols=42 Identities=26% Similarity=0.300 Sum_probs=26.4
Q ss_pred hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh
Q 028883 84 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (202)
Q Consensus 84 ~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg 129 (202)
.|+++...+.. ..+ ...+.+..++.+++++|.++.....+..
T Consensus 68 ~~~~~~~~~~~--~~~--~~~i~~~~~~~~~dlvvig~~~~~~~~~ 109 (130)
T cd00293 68 AGVKVETVVLE--GDP--AEAILEAAEELGADLIVMGSRGRSGLRR 109 (130)
T ss_pred CCCceEEEEec--CCC--HHHHHHHHHHcCCCEEEEcCCCCCccce
Confidence 46766655543 223 4555555666778999988877666533
No 284
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=55.10 E-value=1.1e+02 Score=25.65 Aligned_cols=80 Identities=13% Similarity=0.123 Sum_probs=46.5
Q ss_pred eEEEEecCC--CCHH----HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchhhhhh
Q 028883 60 IVGIIMESD--LDLP----VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLSGVAA 132 (202)
Q Consensus 60 ~V~IimGS~--SD~~----v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~LpgvvA 132 (202)
+|++++-+. .|-| +.+.+.+.++++|+. +.+.... .++...++++++..++++.||..... +..+-..+.
T Consensus 1 ~I~~i~~~~~~~~~~f~~~~~~gi~~~~~~~gy~--~~i~~~~-~~~~~~~~i~~l~~~~vdgiI~~~~~~~~~~~~~~~ 77 (265)
T cd06354 1 KVALVTDVGGLGDKSFNQSAWEGLERAAKELGIE--YKYVESK-SDADYEPNLEQLADAGYDLIVGVGFLLADALKEVAK 77 (265)
T ss_pred CEEEEeCCCCcCchhHHHHHHHHHHHHHHHcCCe--EEEEecC-CHHHHHHHHHHHHhCCCCEEEEcCcchHHHHHHHHH
Confidence 467777431 3444 444556777888864 5555544 46667788888888888877776422 322323332
Q ss_pred hccCCcEEEe
Q 028883 133 ANSQILVIRV 142 (202)
Q Consensus 133 ~~T~~PVIgV 142 (202)
.....|++-+
T Consensus 78 ~~~~~PiV~i 87 (265)
T cd06354 78 QYPDQKFAII 87 (265)
T ss_pred HCCCCEEEEE
Confidence 2224566654
No 285
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.96 E-value=19 Score=32.67 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=33.1
Q ss_pred EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 90 v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
.+|...|+....+.++.++ ++++|+++|...-+.+=.--. ..=||-|=++
T Consensus 183 AtVt~chs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~~~ik~-gavVIDvGin 232 (278)
T PRK14172 183 ATVTICHSKTKNLKEVCKK-----ADILVVAIGRPKFIDEEYVKE-GAIVIDVGTS 232 (278)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCccCHHHcCC-CcEEEEeecc
Confidence 3677788777778887754 799999999988765422111 1226666444
No 286
>PLN02884 6-phosphofructokinase
Probab=54.83 E-value=20 Score=34.14 Aligned_cols=85 Identities=26% Similarity=0.355 Sum_probs=55.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHH----HHhCCC--------e---------EE---------------EEEccCCCchHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTL----SDFGVP--------Y---------EI---------------KILPPHQNCKEA 102 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L----~~~gi~--------~---------ev---------------~V~SaHRtp~~l 102 (202)
-+|+|++++ -|-|=|..+...+ ...|+. | ++ .+.+--|.....
T Consensus 54 ~rIaIltsG-GdaPGmNa~Iravv~~a~~~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LGtsR~~~~~ 132 (411)
T PLN02884 54 VKAAIVTCG-GLCPGLNDVIRQIVFTLEIYGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLGVSRGGAKT 132 (411)
T ss_pred eEEEEEcCC-CCCccHhHHHHHHHHHHHHcCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceeccCCCCccH
Confidence 579999866 4777777555433 445652 0 11 234445666678
Q ss_pred HHHHHHHhhcCceEEEEecCCcCchhhhhh-hc------cCCcEEEecCC
Q 028883 103 LSYALSAKERGIKIIIVGDGVEAHLSGVAA-AN------SQILVIRVPLL 145 (202)
Q Consensus 103 ~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA-~~------T~~PVIgVP~~ 145 (202)
.+.++.+++.+++.+|++-|- +.+-+.-. +. ..+||||||-.
T Consensus 133 ~~i~~~L~~~~Id~LivIGGd-gS~~~a~~L~~~~~~~g~~i~vIGIPkT 181 (411)
T PLN02884 133 SDIVDSIEARGINMLFVLGGN-GTHAGANAIHNECRKRKMKVSVVGVPKT 181 (411)
T ss_pred HHHHHHHHHcCCCEEEEECCc-hHHHHHHHHHHHHHHcCCCceEEecccc
Confidence 889999999999988888554 44433322 11 45999999976
No 287
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=54.47 E-value=18 Score=31.97 Aligned_cols=91 Identities=15% Similarity=0.033 Sum_probs=54.3
Q ss_pred CCeEEEEe---cCCCCHHHHH--HHHHHHHHhC--CCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh
Q 028883 58 APIVGIIM---ESDLDLPVMN--DAARTLSDFG--VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV 130 (202)
Q Consensus 58 ~~~V~Iim---GS~SD~~v~~--~a~~~L~~~g--i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv 130 (202)
..+|+.+. |-+...-.-. -=..-.+..+ +.+.+..++-+-.|++-.+.++.+-++|++||..+||.++.=.-=
T Consensus 126 t~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~np~i~v~~~~~gs~~D~~~~~~~a~~li~~GaDvI~~~ag~~~~gv~~ 205 (306)
T PF02608_consen 126 TGKVGFIGDIGGMDIPPVNRFINGFIAGAKYVNPDIKVNVSYTGSFNDPAKAKEAAEALIDQGADVIFPVAGGSGQGVIQ 205 (306)
T ss_dssp STEEEEEEEEES--SCTTHHHHHHHHHHHHHTTTT-EEEEEE-SSSS-HHHHHHHHHHHHHTT-SEEEEE-CCCHHHHHH
T ss_pred cCcccccccccCCCcHhHHHHHHHHHHHHHHhCcCceEEEEEcCCcCchHHHHHHHHHHhhcCCeEEEECCCCCchHHHH
Confidence 47899998 7765533211 1112223333 335566677888999999999999999999999999965543222
Q ss_pred hhhccCCc--EEEecCCCCC
Q 028883 131 AAANSQIL--VIRVPLLSED 148 (202)
Q Consensus 131 vA~~T~~P--VIgVP~~~~~ 148 (202)
.|...... +||+...-..
T Consensus 206 aa~e~g~~~~~IG~d~dq~~ 225 (306)
T PF02608_consen 206 AAKEAGVYGYVIGVDSDQSY 225 (306)
T ss_dssp HHHHHTHETEEEEEES--CC
T ss_pred HHHHcCCceEEEEecccccc
Confidence 34456667 9999887543
No 288
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.44 E-value=19 Score=32.95 Aligned_cols=49 Identities=12% Similarity=0.207 Sum_probs=33.5
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
+|...|.....+.++.++ ++++|++.|...-+.+=.--.-. =||-|=+.
T Consensus 184 tVtv~hs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~~~ik~ga-vVIDvGin 232 (297)
T PRK14186 184 TVTIAHSRTQDLASITRE-----ADILVAAAGRPNLIGAEMVKPGA-VVVDVGIH 232 (297)
T ss_pred EEEEeCCCCCCHHHHHhh-----CCEEEEccCCcCccCHHHcCCCC-EEEEeccc
Confidence 667778888888888754 79999999998776542222111 27766554
No 289
>PLN02837 threonine-tRNA ligase
Probab=54.26 E-value=49 Score=32.82 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=42.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
..|.||.-++.+.+.+.+.++.|++-|+.+++ .. . + ++.+-++.++..|+..+|.+.-
T Consensus 517 ~qV~IIpi~~~~~~~A~~Ia~~Lr~~GirVev-~~-~-~---slgkkir~A~~~gip~~IiIG~ 574 (614)
T PLN02837 517 VQARVLPVTDNELEYCKEVVAKLKAKGIRAEV-CH-G-E---RLPKLIRNAETQKIPLMAVVGP 574 (614)
T ss_pred ccEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-eC-C-C---CHHHHHHHHHHcCCCEEEEEcc
Confidence 45777777788889999999999999998887 32 2 3 3444455566788876665543
No 290
>TIGR02405 trehalos_R_Ecol trehalose operon repressor, proteobacterial. This family consists of repressors of the LacI family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gammaproteobacteria and does not include the GntR family TreR of Bacillus subtilis
Probab=53.78 E-value=1.4e+02 Score=25.51 Aligned_cols=62 Identities=10% Similarity=0.036 Sum_probs=44.0
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
+...|+++...-++ ...++.+.+.+++.|. ++-++..+..+++..++++....+.++-+|..
T Consensus 58 ~~~~Ig~i~~~~~~~~~~~~~~~i~~~~~~~gy--~~~i~~~~~~~~~~~~~~~~l~~~~vdGvIi~ 122 (311)
T TIGR02405 58 SDKVVAVIVSRLDSPSENLAVSGMLPVFYTAGY--DPIIMESQFSPQLTNEHLSVLQKRNVDGVILF 122 (311)
T ss_pred CCCEEEEEeCCcccccHHHHHHHHHHHHHHCCC--eEEEecCCCChHHHHHHHHHHHhcCCCEEEEe
Confidence 34579999864333 3356677777888874 56677778889888888887777778766654
No 291
>PRK11253 ldcA L,D-carboxypeptidase A; Provisional
Probab=53.71 E-value=59 Score=29.44 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=45.0
Q ss_pred CeEEEEecCC-C-CHHHHHHHHHHHHHhCCCeEEEEEc-------cCCCchHHHHHHHHH--hhcCceEEEEecCCcCc
Q 028883 59 PIVGIIMESD-L-DLPVMNDAARTLSDFGVPYEIKILP-------PHQNCKEALSYALSA--KERGIKIIIVGDGVEAH 126 (202)
Q Consensus 59 ~~V~IimGS~-S-D~~v~~~a~~~L~~~gi~~ev~V~S-------aHRtp~~l~~~~~~~--~~~g~~ViIa~AG~aa~ 126 (202)
.+|+||+=|. - +.+..+.+.+.|+++|....+.=.. +.-.-+|..++.+-+ .+. +++|+++-|+.+.
T Consensus 2 ~~I~viAPSs~~~~~~~~~~~i~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~a~~dp-i~aI~~~rGGyg~ 79 (305)
T PRK11253 2 SLFHLIAPSGYPIDQAAALRGVQRLTDAGHQVENVEVIARRYQRFAGTDGERLADLNSLADLTTP-NTIVLAVRGGYGA 79 (305)
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHhCCCEEeeccccccccCccCCCHHHHHHHHHHHHhcCCC-ccEEEEecccCCH
Confidence 3689998885 2 7788999999999999864331111 111224566665544 445 8999999998654
No 292
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=53.65 E-value=23 Score=23.86 Aligned_cols=35 Identities=11% Similarity=0.118 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~ 106 (202)
+.++++...|++.|++|+...+......+...+|.
T Consensus 10 ~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~ 44 (74)
T cd03045 10 PPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFL 44 (74)
T ss_pred CcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHH
Confidence 56788999999999999988776544433334444
No 293
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.63 E-value=21 Score=32.51 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+...+.++|+++|++++ -+|...|...+.+.++.++ ++++|+++|...-+
T Consensus 140 Tp~avi~ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~nl~~~~~~-----ADIvI~AvGk~~~i 214 (282)
T PRK14182 140 TPAGVMRMLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTADLAGEVGR-----ADILVAAIGKAELV 214 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCcc
Confidence 45667777788877541 3677779888888887753 79999999986655
Q ss_pred hhhhhhccCCcEEEecCC
Q 028883 128 SGVAAANSQILVIRVPLL 145 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~ 145 (202)
.+=.--.- .=||-|=+.
T Consensus 215 ~~~~ik~g-aiVIDvGin 231 (282)
T PRK14182 215 KGAWVKEG-AVVIDVGMN 231 (282)
T ss_pred CHHHcCCC-CEEEEeece
Confidence 44221111 227776654
No 294
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=53.39 E-value=1.3e+02 Score=24.79 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=49.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHHHHhCC----CeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh
Q 028883 61 VGIIMESDLD---LPVMNDAARTLSDFGV----PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA 133 (202)
Q Consensus 61 V~IimGS~SD---~~v~~~a~~~L~~~gi----~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~ 133 (202)
|+|+.. -++ ..+.+.+.+.+++.|. +.++-+......++...++++++.+++.+.||... ..+.... ...
T Consensus 2 igv~~~-~~~~~~~~~~~gi~~~~~~~g~~~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vd~iI~~~-~~~~~~~-~~~ 78 (281)
T cd06325 2 VGILQL-VEHPALDAARKGFKDGLKEAGYKEGKNVKIDYQNAQGDQSNLPTIARKFVADKPDLIVAIA-TPAAQAA-ANA 78 (281)
T ss_pred eEEecC-CCCcchHHHHHHHHHHHHHhCccCCceEEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcC-cHHHHHH-HHc
Confidence 555553 333 2345667777777775 45666666666788888888888877888777753 3222221 233
Q ss_pred ccCCcEEEe
Q 028883 134 NSQILVIRV 142 (202)
Q Consensus 134 ~T~~PVIgV 142 (202)
....|||.+
T Consensus 79 ~~~iPvV~~ 87 (281)
T cd06325 79 TKDIPIVFT 87 (281)
T ss_pred CCCCCEEEE
Confidence 456788876
No 295
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=52.97 E-value=96 Score=27.25 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 69 LDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 69 SD~~v~~~a~~~L~~-~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
.|.+...+..+.+++ .++|.-+++.. +.+...++++.+++.|++.|++..
T Consensus 140 ~~~~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G~d~i~v~n 190 (300)
T TIGR01037 140 QDPELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAGADGLTLIN 190 (300)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcCCCEEEEEc
Confidence 366677777777765 58888888752 446778888888888888877653
No 296
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=52.67 E-value=71 Score=28.19 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=46.5
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE--ccCC-CchHHHHHHHHHhhcCceEEEEe
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL--PPHQ-NCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~--SaHR-tp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
.+.-|.-..||++.++++.+..++.|..+.+.+. ...| +|+.+.++++++.+.|++.|-.+
T Consensus 106 ~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (275)
T cd07937 106 DIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK 169 (275)
T ss_pred CEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 3444566889999999999999999987776563 2344 47888999999999888754433
No 297
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.67 E-value=49 Score=30.20 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=46.6
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEE
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa 119 (202)
.++.|..|.+. +.-+++-..+.++++||.+++.-....-+.+++.+.++++.++ ..+=||.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlv 97 (284)
T PRK14177 35 KLATILVGNNPASETYVSMKVKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILL 97 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 57777788774 4556666788999999999999998888999999999988653 3343443
No 298
>PRK14071 6-phosphofructokinase; Provisional
Probab=52.55 E-value=21 Score=33.26 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=31.2
Q ss_pred chHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hhccCCcEEEecCCC
Q 028883 99 CKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AANSQILVIRVPLLS 146 (202)
Q Consensus 99 p~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~~T~~PVIgVP~~~ 146 (202)
++...+.++.+++.+++.+|++-|-.. +.+.- +-...+||||+|-.-
T Consensus 93 ~~~~~~~~~~l~~~~Id~Li~IGGdgS-~~~a~~L~~~~~i~vIgiPkTI 141 (360)
T PRK14071 93 RDRSQEIIDGYHSLGLDALIGIGGDGS-LAILRRLAQQGGINLVGIPKTI 141 (360)
T ss_pred hHHHHHHHHHHHHcCCCEEEEECChhH-HHHHHHHHHhcCCcEEEecccc
Confidence 345677788888888888888766533 33321 111379999999763
No 299
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=52.28 E-value=1e+02 Score=23.30 Aligned_cols=80 Identities=25% Similarity=0.206 Sum_probs=53.0
Q ss_pred ecCCCCHHHHHHHHHHHHHh-CCCe----------------EEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 65 MESDLDLPVMNDAARTLSDF-GVPY----------------EIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 65 mGS~SD~~v~~~a~~~L~~~-gi~~----------------ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
.|.-+-...++.....+... |++. -+-++|-.....++.+.++.++++|+++|..... ..|
T Consensus 5 ~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~~--~~l 82 (119)
T cd05017 5 LGMGGSGIGGDLLESLLLDEAKIPVYVVKDYTLPAFVDRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITSG--GKL 82 (119)
T ss_pred EEcCHHHHHHHHHHHHHHhccCCCEEEecCccCcCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeCC--chH
Confidence 34334444556666666652 5542 2567788888889999999999999876544432 247
Q ss_pred hhhhhhccCCcEEEecCCCC
Q 028883 128 SGVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~~~ 147 (202)
..+.-.. ..|+|-||....
T Consensus 83 ~~~~~~~-~~~~~~~p~~~~ 101 (119)
T cd05017 83 LEMAREH-GVPVIIIPKGLQ 101 (119)
T ss_pred HHHHHHc-CCcEEECCCCCC
Confidence 7765444 789999987653
No 300
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=51.98 E-value=1.1e+02 Score=27.98 Aligned_cols=55 Identities=24% Similarity=0.197 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHH-hC-----CCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 68 DLDLPVMNDAARTLSD-FG-----VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 68 ~SD~~v~~~a~~~L~~-~g-----i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
..|...++++.+.+++ .+ +|.-+++. .+-+.+++.++++.+++.|++-|++..+.
T Consensus 188 ~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKls-p~~~~~~~~~ia~~l~~~Gadgi~~~nt~ 248 (344)
T PRK05286 188 LQYGEALDELLAALKEAQAELHGYVPLLVKIA-PDLSDEELDDIADLALEHGIDGVIATNTT 248 (344)
T ss_pred ccCHHHHHHHHHHHHHHHhccccCCceEEEeC-CCCCHHHHHHHHHHHHHhCCcEEEEeCCc
Confidence 5566667776666654 56 89888887 55566678899999988899888877654
No 301
>PRK13761 hypothetical protein; Provisional
Probab=51.79 E-value=36 Score=30.68 Aligned_cols=80 Identities=16% Similarity=0.158 Sum_probs=55.3
Q ss_pred EecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--------hcc
Q 028883 64 IMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--------ANS 135 (202)
Q Consensus 64 imGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--------~~T 135 (202)
|=|-+.=+ +.++..+.-+..|.+.||. =.|||.+|+..+.+.+++.|++.+... +-...+||.=. |.-
T Consensus 74 VNGN~AAL-~p~eiveLa~~~~A~iEVN--LF~RT~eR~~~I~~~l~~~Ga~~vlG~-~~~~~ip~L~~~R~~v~~~GIy 149 (248)
T PRK13761 74 VNGNTAAL-VPEEIVELAEALNAKLEVN--LFYRTEERVEKIAEVLREHGAKEVLGT-DEDARIPGLDHERAKVSEDGIY 149 (248)
T ss_pred EcchHHhh-ChHHHHHHHHHhCCCEEEE--eccCCHHHHHHHHHHHHHcCCceeeCC-CCcCcCCCCCCccceECcccce
Confidence 34444332 3467777778888876655 489999999999999999998854443 33677776543 234
Q ss_pred CCcEEEecCCCC
Q 028883 136 QILVIRVPLLSE 147 (202)
Q Consensus 136 ~~PVIgVP~~~~ 147 (202)
.--|+=||...+
T Consensus 150 ~ADVVLVPLEDG 161 (248)
T PRK13761 150 SADVVLVPLEDG 161 (248)
T ss_pred eccEEEecCCCC
Confidence 456888998754
No 302
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=51.76 E-value=1.8e+02 Score=26.09 Aligned_cols=127 Identities=14% Similarity=0.175 Sum_probs=79.3
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec-CCcCchhhhhh
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD-GVEAHLSGVAA 132 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A-G~aa~LpgvvA 132 (202)
+...|++++-.-++ .++++.+.+.|++.|. .+-++..+..+++..++.+....++++=||... .....+.-.+.
T Consensus 57 ~s~~Ig~i~p~~~~~~~~~i~~gi~~~~~~~gy--~~~l~~~~~~~~~e~~~~~~l~~~~vdGiIi~~~~~~~~~~~~l~ 134 (333)
T COG1609 57 RTKTIGLVVPDITNPFFAEILKGIEEAAREAGY--SLLLANTDDDPEKEREYLETLLQKRVDGLILLGERPNDSLLELLA 134 (333)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCC--EEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHH
Confidence 44689999987666 3344555555666664 788888888999999999999888887555444 44444444554
Q ss_pred hccCCcEEEecCCCCCCChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHHHHccCC------------HHHHHHHHHHH
Q 028883 133 ANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIAD------------EDLLERIRKYV 200 (202)
Q Consensus 133 ~~T~~PVIgVP~~~~~l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~~d------------~~l~~kl~~~~ 200 (202)
.. ..|++-+=-... ..++ ..|.+||-.++-.++-.++.... ..-.+|++.|+
T Consensus 135 ~~-~~P~V~i~~~~~-------------~~~~--~~V~~Dn~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~ 198 (333)
T COG1609 135 AA-GIPVVVIDRSPP-------------GLGV--PSVGIDNFAGAYLATEHLIELGHRRIAFIGGPLDSSASRERLEGYR 198 (333)
T ss_pred hc-CCCEEEEeCCCc-------------cCCC--CEEEEChHHHHHHHHHHHHHCCCceEEEEeCCCccccHhHHHHHHH
Confidence 44 677765433221 1233 44777877666555555555422 23366677665
Q ss_pred h
Q 028883 201 E 201 (202)
Q Consensus 201 ~ 201 (202)
+
T Consensus 199 ~ 199 (333)
T COG1609 199 A 199 (333)
T ss_pred H
Confidence 4
No 303
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=51.60 E-value=85 Score=24.11 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=54.2
Q ss_pred eEEEEecCCCCHHHHH-HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCc
Q 028883 60 IVGIIMESDLDLPVMN-DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQIL 138 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~-~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~P 138 (202)
+|.+++|+-.=-..+- +.....++.|+++++.-.|. +...+. ...+++|+.+--..-.+..+-......|
T Consensus 5 kIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~----~~~~~~-----~~~~DviLl~Pqi~~~~~~i~~~~~~~p 75 (106)
T PRK10499 5 HIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPE----TLAGEK-----GQNADVVLLGPQIAYMLPEIQRLLPNKP 75 (106)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeec----chhhcc-----ccCCCEEEECHHHHHHHHHHHhhcCCCC
Confidence 5677766554444444 88888899999999864431 222221 2347999987666666766644444579
Q ss_pred EEEecCCC-CCCChhh
Q 028883 139 VIRVPLLS-EDWSEDD 153 (202)
Q Consensus 139 VIgVP~~~-~~l~G~D 153 (202)
|+.++... +.++|-.
T Consensus 76 V~~I~~~~Yg~~dg~~ 91 (106)
T PRK10499 76 VEVIDSLLYGKVDGLG 91 (106)
T ss_pred EEEEChHhhhcCCHHH
Confidence 99988764 3466654
No 304
>PRK07109 short chain dehydrogenase; Provisional
Probab=51.57 E-value=93 Score=27.73 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=27.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAK 110 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~ 110 (202)
.++.+|+|+++ .+...+++.|-+-|. ++.++ -|.++++.++.++.+
T Consensus 8 ~k~vlITGas~--gIG~~la~~la~~G~--~Vvl~--~R~~~~l~~~~~~l~ 53 (334)
T PRK07109 8 RQVVVITGASA--GVGRATARAFARRGA--KVVLL--ARGEEGLEALAAEIR 53 (334)
T ss_pred CCEEEEECCCC--HHHHHHHHHHHHCCC--EEEEE--ECCHHHHHHHHHHHH
Confidence 45788888877 455666666666664 33333 366666665554443
No 305
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=51.43 E-value=86 Score=22.66 Aligned_cols=70 Identities=7% Similarity=0.084 Sum_probs=45.0
Q ss_pred eEEEEecCCCCHHHH--HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 60 IVGIIMESDLDLPVM--NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 60 ~V~IimGS~SD~~v~--~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
+|.+++|+---...+ .+..+.+++.++..++.-.+.... . +.+++||+-.-...-|+ ......
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~-----------~-~~~Dliitt~~l~~~~~---~~~~~~ 66 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDEL-----------P-SDADLVVTHASLTDRAK---KKAPQA 66 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhC-----------C-CCCCEEEEChHHHHHHH---hcCCCC
Confidence 588999887666664 678899999999888775544221 1 34688888543332222 123468
Q ss_pred cEEEecC
Q 028883 138 LVIRVPL 144 (202)
Q Consensus 138 PVIgVP~ 144 (202)
|||.+=.
T Consensus 67 ~vi~v~~ 73 (87)
T cd05567 67 QHLSVDN 73 (87)
T ss_pred eEEEEec
Confidence 8988643
No 306
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=51.36 E-value=41 Score=28.61 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccCCCc-------hHHHHHHHHHhhcCceEEEE
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPHQNC-------KEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp-------~~l~~~~~~~~~~g~~ViIa 119 (202)
|.+.+++..+.|++ .+|+-|++.|=.. ++..+++++....|+++||.
T Consensus 158 ~~~~i~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~~A~~l~~~G~DvIiG 211 (239)
T smart00854 158 DREKILADIARARK---KADVVIVSLHWGVEYQYEPTDEQRELAHALIDAGADVVIG 211 (239)
T ss_pred CHHHHHHHHHHHhc---cCCEEEEEecCccccCCCCCHHHHHHHHHHHHcCCCEEEc
Confidence 45555555555554 4799999999653 34467877776778999884
No 307
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=51.31 E-value=22 Score=32.61 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+...+.++|+++|++++ .+|...|.....+.++.++ ++++|+++|...-+
T Consensus 150 Tp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~nl~~~~~~-----ADIvv~AvGk~~~i 224 (299)
T PLN02516 150 TPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTPDPESIVRE-----ADIVIAAAGQAMMI 224 (299)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcc
Q ss_pred hh
Q 028883 128 SG 129 (202)
Q Consensus 128 pg 129 (202)
.+
T Consensus 225 ~~ 226 (299)
T PLN02516 225 KG 226 (299)
T ss_pred CH
No 308
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=51.29 E-value=99 Score=24.73 Aligned_cols=57 Identities=19% Similarity=0.154 Sum_probs=33.2
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEE
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa 119 (202)
|=|+.| -|....++....|+++|++..+=--.+.....-++++.+.+.+.++-|++.
T Consensus 2 VFIvhg--~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~ 58 (125)
T PF10137_consen 2 VFIVHG--RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLF 58 (125)
T ss_pred EEEEeC--CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEE
Confidence 445555 888999999999999998755433333333333444444443333344443
No 309
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.24 E-value=60 Score=29.69 Aligned_cols=54 Identities=6% Similarity=0.074 Sum_probs=43.7
Q ss_pred CeEEEEecCCCCHHHH-HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDLPVM-NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~-~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+-... +...+.++++||.+++.-.+..-+.+++.+.++++.++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D 88 (288)
T PRK14171 34 KLAIVLVGDNPASIIYVKNKIKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLD 88 (288)
T ss_pred eEEEEEeCCCccHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4677778877665554 45688899999999999999999999999999988554
No 310
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=51.16 E-value=93 Score=29.65 Aligned_cols=36 Identities=8% Similarity=0.035 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHH
Q 028883 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALS 108 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~ 108 (202)
+...+.+++.++-=.|++...++|+..+++.+.+++
T Consensus 13 IG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~ 48 (385)
T PRK05447 13 IGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQARE 48 (385)
T ss_pred HHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHH
Confidence 444555666655445677777777777777776654
No 311
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.09 E-value=1.3e+02 Score=24.40 Aligned_cols=67 Identities=7% Similarity=0.070 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hccCCcEEEe
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 142 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T~~PVIgV 142 (202)
...+.+.+.++++|+. +.+.......+...++.+...+.+++.||..+.... ...+. .....|||.+
T Consensus 21 ~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~dgiii~~~~~~--~~~~~~~~~~~ipvV~~ 89 (270)
T cd06294 21 EVLRGISAVANENGYD--ISLATGKNEEELLEEVKKMIQQKRVDGFILLYSRED--DPIIDYLKEEKFPFVVI 89 (270)
T ss_pred HHHHHHHHHHHHCCCE--EEEecCCCcHHHHHHHHHHHHHcCcCEEEEecCcCC--cHHHHHHHhcCCCEEEE
Confidence 4566777888889865 445555543333333333334455787777654322 12232 2345788876
No 312
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=51.00 E-value=32 Score=22.96 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccC
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPH 96 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaH 96 (202)
.-+.++++...|++.|++|+.......
T Consensus 8 ~~~~~~~v~~~l~~~gi~~~~~~v~~~ 34 (73)
T cd03059 8 DDVYSHRVRIVLAEKGVSVEIIDVDPD 34 (73)
T ss_pred CChhHHHHHHHHHHcCCccEEEEcCCC
Confidence 456889999999999999998766643
No 313
>PRK14072 6-phosphofructokinase; Provisional
Probab=50.93 E-value=25 Score=33.37 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCCcCchhhhh--hh-----ccCCcEEEecCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA--AA-----NSQILVIRVPLL 145 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv--A~-----~T~~PVIgVP~~ 145 (202)
+++...+.++.+++.+++.+|++-| .+.+-+.- +- ...+||||||-.
T Consensus 88 ~~~~~~~~~~~l~~~~Id~LivIGG-dgS~~~a~~L~e~~~~~g~~i~vIgIPkT 141 (416)
T PRK14072 88 DRAEYERLLEVFKAHDIGYFFYNGG-NDSMDTALKVSQLAKKMGYPIRCIGIPKT 141 (416)
T ss_pred ChHHHHHHHHHHHHcCCCEEEEECC-hHHHHHHHHHHHHHHHhCCCceEEEeeec
Confidence 3567788888888888888888754 44443332 21 235899999976
No 314
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=50.80 E-value=1.9e+02 Score=26.01 Aligned_cols=85 Identities=14% Similarity=0.088 Sum_probs=54.9
Q ss_pred CCCeEEEEecCCCCHHHHH----HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883 57 DAPIVGIIMESDLDLPVMN----DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA 132 (202)
Q Consensus 57 ~~~~V~IimGS~SD~~v~~----~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA 132 (202)
...++++++-+..+ |+.. .+.+.++++|+...+. ...+-.+++-.++++++..++++.||...--..+|..++-
T Consensus 22 ~~~~i~~v~k~~~~-pf~~~~~~Gi~~aa~~~G~~v~~~-~~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~ 99 (336)
T PRK15408 22 AAERIAFIPKLVGV-GFFTSGGNGAKEAGKELGVDVTYD-GPTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALK 99 (336)
T ss_pred CCcEEEEEECCCCC-HHHHHHHHHHHHHHHHhCCEEEEE-CCCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHH
Confidence 33478888855443 4443 4556667888655432 3344455666678888888999988887666666666664
Q ss_pred h--ccCCcEEEec
Q 028883 133 A--NSQILVIRVP 143 (202)
Q Consensus 133 ~--~T~~PVIgVP 143 (202)
- ....|||.+=
T Consensus 100 ~a~~~gIpVV~~d 112 (336)
T PRK15408 100 RAMQRGVKVLTWD 112 (336)
T ss_pred HHHHCCCeEEEeC
Confidence 3 3467998863
No 315
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=50.73 E-value=79 Score=27.67 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHHh-CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883 69 LDLPVMNDAARTLSDF-GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 69 SD~~v~~~a~~~L~~~-gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
.|...+.+..+.+++. ++|.-+++.. ..+...++++.+++.|++.|++.
T Consensus 137 ~~~~~~~eiv~~vr~~~~~Pv~vKl~~---~~~~~~~~a~~~~~~G~d~i~~~ 186 (296)
T cd04740 137 TDPEAVAEIVKAVKKATDVPVIVKLTP---NVTDIVEIARAAEEAGADGLTLI 186 (296)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCC---CchhHHHHHHHHHHcCCCEEEEE
Confidence 4667777777777664 8999999742 23467788888888888877654
No 316
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.63 E-value=61 Score=29.57 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=46.5
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEE
Q 028883 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa 119 (202)
.++.|..|.+.+-. +.+...+.++++||.+++.-.+..-+.+++.+.++++.++ ..+=||.
T Consensus 34 ~La~i~vg~~~~s~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlv 96 (296)
T PRK14188 34 GLAVVLVGEDPASQVYVRSKGKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILV 96 (296)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEE
Confidence 46777777665544 5556788899999999999999999999999999988654 2344444
No 317
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=50.55 E-value=74 Score=28.85 Aligned_cols=93 Identities=16% Similarity=0.078 Sum_probs=61.5
Q ss_pred CCCCCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhh
Q 028883 53 GDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVA 131 (202)
Q Consensus 53 ~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~-Lpgvv 131 (202)
....+++.|-|+-.+.-+..-.++..+.|+++|+++.... ..-.+.+++.+.-+ +.+-|+.-.-... ++-.+
T Consensus 139 ~~~~~~~~VNiiG~~~~~~~d~~el~~lL~~~Gi~v~~~~-~~~~t~~e~~~~~~------A~lniv~~~~~~~~~a~~L 211 (398)
T PF00148_consen 139 PEEKKPRSVNIIGGSPLGPGDLEELKRLLEELGIEVNAVF-PGGTTLEEIRKAPE------AALNIVLCPEGGPYAAEWL 211 (398)
T ss_dssp TTTTSSSEEEEEEESTBTHHHHHHHHHHHHHTTEEEEEEE-ETTBCHHHHHHGGG------SSEEEESSCCHHHHHHHHH
T ss_pred cccCCCCceEEecCcCCCcccHHHHHHHHHHCCCceEEEe-CCCCCHHHHHhCCc------CcEEEEeccchhhHHHHHH
Confidence 4455557899986665555888999999999999543333 24445566655422 5677776666555 66777
Q ss_pred hhccCCcEEEecCCCCCCChhh
Q 028883 132 AANSQILVIRVPLLSEDWSEDD 153 (202)
Q Consensus 132 A~~T~~PVIgVP~~~~~l~G~D 153 (202)
.-....|.+.+|.+-+ +.|.+
T Consensus 212 ~e~~giP~~~~~~p~G-~~~t~ 232 (398)
T PF00148_consen 212 EERFGIPYLYFPSPYG-IEGTD 232 (398)
T ss_dssp HHHHT-EEEEEC-SBS-HHHHH
T ss_pred HHHhCCCeeecccccc-HHHHH
Confidence 7778999999887654 55655
No 318
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.51 E-value=55 Score=30.04 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=44.1
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+. +.-+.+-..+.++++||.++..-.+..-+.+++.+.++++.++
T Consensus 34 ~LaiI~vgdd~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 88 (297)
T PRK14186 34 GLAVLRVGDDPASAVYVRNKEKACARVGIASFGKHLPADTSQAEVEALIAQLNQD 88 (297)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46777777664 5566677788899999999999999999999999999988654
No 319
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=50.41 E-value=1.4e+02 Score=24.49 Aligned_cols=120 Identities=12% Similarity=0.043 Sum_probs=56.5
Q ss_pred CCeEEEEecCCCC---HHHHHHHHHHHHHhC-CCeEEEEEccCCCchHHHHHHHHHhhc--CceEEEEecCCcCchhhhh
Q 028883 58 APIVGIIMESDLD---LPVMNDAARTLSDFG-VPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 58 ~~~V~IimGS~SD---~~v~~~a~~~L~~~g-i~~ev~V~SaHRtp~~l~~~~~~~~~~--g~~ViIa~AG~aa~Lpgvv 131 (202)
..+++++.|.... ..-.+...+.+++.| ++....+ ......+...+.++++-.+ ..++|++.... + .|++
T Consensus 125 ~~~i~~i~~~~~~~~~~~R~~g~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~d~-A--~g~~ 200 (272)
T cd06300 125 KGNVLVVRGLAGHPVDEDRYAGAKEVLKEYPGIKIVGEV-YGDWDQAVAQKAVADFLASNPDVDGIWTQGGD-A--VGAV 200 (272)
T ss_pred CceEEEEECCCCCcchHHHHHHHHHHHHHCCCcEEEeec-CCCCCHHHHHHHHHHHHHhCCCcCEEEecCCC-c--HHHH
Confidence 3579998875322 234455677777777 7654322 2334445555555555333 24666666555 2 2333
Q ss_pred hhccCCcEEEecCCCCCCChhhHHH-hhcCCCCCeeeEEecCChhhHHHHHHHHH
Q 028883 132 AANSQILVIRVPLLSEDWSEDDVIN-SIRMPSHVQVASVPRNNAKNAALYAVKVL 185 (202)
Q Consensus 132 A~~T~~PVIgVP~~~~~l~G~DLlS-~vqMP~GvpVatV~I~n~~NAAl~Aa~IL 185 (202)
.++...=. .+|.-. .+++.+... .....++ +.|+.+.....-|..|+++|
T Consensus 201 ~al~~~g~-~~p~v~-g~d~~~~~~~~~~~~~~--ltti~~~~~~~~g~~a~~~l 251 (272)
T cd06300 201 QAFEQAGR-DIPPVT-GEDENGFLRWRLWKDKG--LKGIAISNPPGQSAAALRAA 251 (272)
T ss_pred HHHHHcCC-CCcEEE-eeCCcHHHHHHhhhccC--ceeEEEeCChHHHHHHHHHH
Confidence 33322111 333111 122223222 0011233 46776644555566666655
No 320
>PF11965 DUF3479: Domain of unknown function (DUF3479); InterPro: IPR022571 This functionally uncharacterised domain, found N-terminal to PF02514 from PFAM, occurs in magnesium chelatase subunit H, which is involved in chlorophyll biosynthesis. It is found in bacteria, green plants and archaea. It is around 160 amino acids in length.; GO: 0016851 magnesium chelatase activity
Probab=50.40 E-value=59 Score=27.43 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=47.2
Q ss_pred EEEEec-CCCCHHHHHHHHHHHHHhCCCeEEEEEccC---CCchHHHHHHHHHhhcCceEEEEecC-CcCch----hhhh
Q 028883 61 VGIIME-SDLDLPVMNDAARTLSDFGVPYEIKILPPH---QNCKEALSYALSAKERGIKIIIVGDG-VEAHL----SGVA 131 (202)
Q Consensus 61 V~IimG-S~SD~~v~~~a~~~L~~~gi~~ev~V~SaH---Rtp~~l~~~~~~~~~~g~~ViIa~AG-~aa~L----pgvv 131 (202)
|.+|++ +.-..+..+.+.....+.....++.+-++. +.|+.++++.+..+. +++||+.== ++-|. |-+-
T Consensus 3 ~V~vtld~~~~~al~~aa~~l~~~~~p~l~l~~~~~~el~~~~~~~~~~~~aia~--ADii~~smlF~ed~v~~l~~~L~ 80 (164)
T PF11965_consen 3 FVIVTLDEHYNSALYRAAARLNRDHCPGLELSVFAAAELERDPEALEECEAAIAR--ADIIFGSMLFIEDHVRPLLPALE 80 (164)
T ss_pred EEEEeCchhhhHHHHHHHHHHhhccCCCeEEEEEeHHHhhcChHHHHHHHHHHHh--CCEEEeehhhhHHHHHHHHHHHH
Confidence 444554 444455555555555565666777777654 999888888776654 688876311 12222 2222
Q ss_pred hhccCCcEEEecCC
Q 028883 132 AANSQILVIRVPLL 145 (202)
Q Consensus 132 A~~T~~PVIgVP~~ 145 (202)
+....+|+.-|-.+
T Consensus 81 ~~r~~~~a~i~~~s 94 (164)
T PF11965_consen 81 ARRDHCPAMIIFES 94 (164)
T ss_pred HHHccCCEEEEEcC
Confidence 23236676655554
No 321
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.34 E-value=25 Score=31.98 Aligned_cols=67 Identities=18% Similarity=0.241 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+.+.+.++|+++|++++ ..|...|+....+.++.++ ++++|+++|...-+
T Consensus 140 Tp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T~nl~~~~~~-----ADIvIsAvGkp~~i 214 (282)
T PRK14166 140 TPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQ-----ADLIIVAAGCVNLL 214 (282)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEcCCCcCcc
Confidence 45666777777777532 3777889888888887754 79999999998876
Q ss_pred hhhhhhccCCcEEEecCC
Q 028883 128 SGVAAANSQILVIRVPLL 145 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~ 145 (202)
.+=.--.- .=||-|=+.
T Consensus 215 ~~~~vk~G-avVIDvGin 231 (282)
T PRK14166 215 RSDMVKEG-VIVVDVGIN 231 (282)
T ss_pred CHHHcCCC-CEEEEeccc
Confidence 54322222 227766654
No 322
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=50.29 E-value=1.1e+02 Score=24.96 Aligned_cols=115 Identities=9% Similarity=-0.015 Sum_probs=62.9
Q ss_pred CCeEEEEecCCCCHHH----HHHHHHHHHHhCCCeEE-EEEccCCCchHHHHHHHHHh-hcCceEEEEecCCc----Cch
Q 028883 58 APIVGIIMESDLDLPV----MNDAARTLSDFGVPYEI-KILPPHQNCKEALSYALSAK-ERGIKIIIVGDGVE----AHL 127 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v----~~~a~~~L~~~gi~~ev-~V~SaHRtp~~l~~~~~~~~-~~g~~ViIa~AG~a----a~L 127 (202)
+++|+||+-|++-... ..-.+..|+++|++... ++ ..-.++.+.+.++++. .++++++|...|.+ ...
T Consensus 4 ~~rv~vit~~d~~~~~~d~n~~~l~~~L~~~G~~v~~~~i--v~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~g~~D~t 81 (163)
T TIGR02667 4 PLRIAILTVSDTRTEEDDTSGQYLVERLTEAGHRLADRAI--VKDDIYQIRAQVSAWIADPDVQVILITGGTGFTGRDVT 81 (163)
T ss_pred ccEEEEEEEeCcCCccCCCcHHHHHHHHHHCCCeEEEEEE--cCCCHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCc
Confidence 4689998766642221 22345568889986432 23 3456666666666653 34689888875543 345
Q ss_pred hhhhhhccCCcEEEecCCCCCCChhh-HHHhhcC-CCCCee-------------eEEecCChhhHHHHHHHH
Q 028883 128 SGVAAANSQILVIRVPLLSEDWSEDD-VINSIRM-PSHVQV-------------ASVPRNNAKNAALYAVKV 184 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqM-P~GvpV-------------atV~I~n~~NAAl~Aa~I 184 (202)
+-+++.+.... +.|.. ++-.+.| |.|-|. -+++.-+.-.|+..+.+.
T Consensus 82 ~eal~~l~~~~----------l~G~~~~~~~i~~~p~G~~~~lsr~~~g~~~~~~v~~LPG~P~aa~~~~~~ 143 (163)
T TIGR02667 82 PEALEPLFDKT----------VEGFGELFRQLSYEEIGTSTIQSRALAGLANGTFVFCLPGSTGACRTAWDK 143 (163)
T ss_pred HHHHHHHHCCc----------CCcHHHHHHHHhhcccCHHHHHhhhhheeeCCeEEEECCCCHHHHHHHHHH
Confidence 55555544433 33333 4444444 445441 235555666777666543
No 323
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=50.23 E-value=75 Score=21.23 Aligned_cols=59 Identities=14% Similarity=0.041 Sum_probs=41.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCe------------EEEEEccCCCchHHHHHHHHHh-hcCceEEE
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPY------------EIKILPPHQNCKEALSYALSAK-ERGIKIII 118 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~------------ev~V~SaHRtp~~l~~~~~~~~-~~g~~ViI 118 (202)
+.-.|..|+-++.+-+++...-|+..|.+. -|.+ +...+-++..+..++.. ..+.+.+|
T Consensus 3 ~~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~-G~f~~~~~A~~~~~~l~~~~~~~~~v 74 (76)
T PF05036_consen 3 SGYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRV-GPFSSREEAEAALRKLKKAAGPDAFV 74 (76)
T ss_dssp -EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEE-CCECTCCHHHHHHHHHHHHHTS--EE
T ss_pred CcEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEE-CCCCCHHHHHHHHHHHhHhhCCCCEE
Confidence 346788999999999999999999888762 2333 57788888888888887 66666555
No 324
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=50.16 E-value=63 Score=22.16 Aligned_cols=33 Identities=9% Similarity=0.097 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHH
Q 028883 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 105 (202)
Q Consensus 71 ~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~ 105 (202)
=|.+.++.+.|++.|++|+..=+ .+.++...++
T Consensus 9 Cp~C~~ak~~L~~~~i~~~~~di--~~~~~~~~~~ 41 (72)
T TIGR02194 9 CVQCKMTKKALEEHGIAFEEINI--DEQPEAIDYV 41 (72)
T ss_pred CHHHHHHHHHHHHCCCceEEEEC--CCCHHHHHHH
Confidence 38999999999999999876433 3445444444
No 325
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=50.15 E-value=2.3e+02 Score=26.90 Aligned_cols=62 Identities=11% Similarity=0.162 Sum_probs=35.8
Q ss_pred hhhhhccCCcEEEecCCCCCCChhh-HHHhhcCCCCCeeeEEecCChhhHHHHHHHHHcc--CCHHHHHHHHHH
Q 028883 129 GVAAANSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQVASVPRNNAKNAALYAVKVLGI--ADEDLLERIRKY 199 (202)
Q Consensus 129 gvvA~~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL~~--~d~~l~~kl~~~ 199 (202)
.+.|..+-.|+|+++-+. -++ ++..+.+|.. ++.+.+-....+. .++..+ +.+++++++++.
T Consensus 339 ~I~a~~~gvP~i~i~Y~~----K~~~~~~~lg~~~~----~~~~~~l~~~~Li-~~v~~~~~~r~~~~~~l~~~ 403 (426)
T PRK10017 339 AIISMNFGTPAIAINYEH----KSAGIMQQLGLPEM----AIDIRHLLDGSLQ-AMVADTLGQLPALNARLAEA 403 (426)
T ss_pred HHHHHHcCCCEEEeeehH----HHHHHHHHcCCccE----EechhhCCHHHHH-HHHHHHHhCHHHHHHHHHHH
Confidence 466778899999998753 245 6788777653 3444544443333 222222 335666666544
No 326
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.87 E-value=27 Score=31.85 Aligned_cols=52 Identities=15% Similarity=0.222 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+...+.++|+.+|++++ .+|...|.....+.++.++ ++++|+++|...-+
T Consensus 140 Tp~avi~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~~l~~~~~~-----ADIvI~AvG~~~~i 214 (284)
T PRK14170 140 TPAGIIELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKE-----ADILVVATGLAKFV 214 (284)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCcc
Q ss_pred hh
Q 028883 128 SG 129 (202)
Q Consensus 128 pg 129 (202)
.+
T Consensus 215 ~~ 216 (284)
T PRK14170 215 KK 216 (284)
T ss_pred CH
No 327
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=49.85 E-value=1.1e+02 Score=23.26 Aligned_cols=89 Identities=16% Similarity=0.045 Sum_probs=53.0
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC----chhhhhhhccC
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA----HLSGVAAANSQ 136 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa----~LpgvvA~~T~ 136 (202)
|.|| ++|..-.+....+|+.+|-.++.. +. +..... ..+......+.+.|-.. .|-..+.....
T Consensus 2 ILvI---ddd~~R~~~L~~ILeFlGe~~~~~--~~----~~~~~~---~~~~~~~~~~v~~g~~~~~~~~l~~l~~~~~~ 69 (109)
T PF06490_consen 2 ILVI---DDDAERRQRLSTILEFLGEQCEAV--SS----SDWSQA---DWSSPWEACAVILGSCSKLAELLKELLKWAPH 69 (109)
T ss_pred EEEE---CCcHHHHHhhhhhhhhcCCCeEEe--cH----HHHHHh---hhhcCCcEEEEEecCchhHHHHHHHHHhhCCC
Confidence 4555 788899999999999999876643 21 222222 22233444444444444 66666677788
Q ss_pred CcEEEecCCCCCCChhh-HHHhhcCCC
Q 028883 137 ILVIRVPLLSEDWSEDD-VINSIRMPS 162 (202)
Q Consensus 137 ~PVIgVP~~~~~l~G~D-LlS~vqMP~ 162 (202)
.||+-+--.... .+.. .++.|.+|.
T Consensus 70 ~Pvlllg~~~~~-~~~~nvvg~Le~Pl 95 (109)
T PF06490_consen 70 IPVLLLGEHDSP-EELPNVVGELEEPL 95 (109)
T ss_pred CCEEEECCCCcc-ccccCeeEecCCCC
Confidence 999977655443 2333 444455443
No 328
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=49.49 E-value=1.2e+02 Score=23.34 Aligned_cols=77 Identities=14% Similarity=0.043 Sum_probs=41.6
Q ss_pred HHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC------cEEEecCCCCCCChhh
Q 028883 80 TLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI------LVIRVPLLSEDWSEDD 153 (202)
Q Consensus 80 ~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~------PVIgVP~~~~~l~G~D 153 (202)
.+.++..++++.... ++..+...++.+++. ..+ .|+++|+.+.+.-++.++-.. |.||+=+.+. |-|
T Consensus 19 ~~~~~l~~~~v~~t~-~~~~~~~~~~~~~~~--~~d-~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT---gNd 91 (124)
T smart00046 19 KFRLLLNPAQVFDLT-KKGPAAALVIFRDLP--KFD-RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT---GND 91 (124)
T ss_pred HHHHHcCCceEEEEe-cCChHHHHHHHhhcC--cCC-EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC---hhH
Confidence 344444555655554 344444445544432 234 555789999999998887421 3444433332 344
Q ss_pred HHHhhcCCCC
Q 028883 154 VINSIRMPSH 163 (202)
Q Consensus 154 LlS~vqMP~G 163 (202)
+--.+.+|..
T Consensus 92 far~lgi~~~ 101 (124)
T smart00046 92 LARSLGWGGG 101 (124)
T ss_pred HHHHcCCCCC
Confidence 4455555554
No 329
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=49.42 E-value=1.2e+02 Score=29.53 Aligned_cols=113 Identities=24% Similarity=0.355 Sum_probs=68.2
Q ss_pred cccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEcc----CCCchHHHHHHHHHhhcC-ceEEE
Q 028883 45 VFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPP----HQNCKEALSYALSAKERG-IKIII 118 (202)
Q Consensus 45 ~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L~~-~gi~~ev~V~Sa----HRtp~~l~~~~~~~~~~g-~~ViI 118 (202)
.|++....+.|.-+.+|||||+.++ .....+..+++. |- .+++-|... --.++++.+-++.+..++ +||+|
T Consensus 122 lFd~~~KkpLP~~p~~IGVITS~tg--AairDIl~~~~rR~P-~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlI 198 (440)
T COG1570 122 LFDPERKKPLPFFPKKIGVITSPTG--AALRDILHTLSRRFP-SVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLI 198 (440)
T ss_pred CcChhhcCCCCCCCCeEEEEcCCch--HHHHHHHHHHHhhCC-CCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEE
Confidence 3666656777777789999999876 667778888865 43 234433321 123556666667777776 89999
Q ss_pred EecCCcC----------chhhhhhhccCCcEEEecCCCCCCChhhHHHhhcCC
Q 028883 119 VGDGVEA----------HLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMP 161 (202)
Q Consensus 119 a~AG~aa----------~LpgvvA~~T~~PVIgVP~~~~~l~G~DLlS~vqMP 161 (202)
++=|+-. .|.=.+ .....|||.===-..++-=.|+-+=+..|
T Consensus 199 VaRGGGSiEDLW~FNdE~vaRAi-~~s~iPvISAVGHEtD~tL~DfVAD~RAp 250 (440)
T COG1570 199 VARGGGSIEDLWAFNDEIVARAI-AASRIPVISAVGHETDFTLADFVADLRAP 250 (440)
T ss_pred EecCcchHHHHhccChHHHHHHH-HhCCCCeEeecccCCCccHHHhhhhccCC
Confidence 9887632 122222 45778888521111233334566666654
No 330
>PRK10329 glutaredoxin-like protein; Provisional
Probab=49.42 E-value=97 Score=22.33 Aligned_cols=35 Identities=14% Similarity=0.151 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHH
Q 028883 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 105 (202)
Q Consensus 69 SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~ 105 (202)
++=+.++.+.+.|++.||+|+..=+ .+.|+...++
T Consensus 9 ~~Cp~C~~ak~~L~~~gI~~~~idi--~~~~~~~~~~ 43 (81)
T PRK10329 9 NDCVQCHATKRAMESRGFDFEMINV--DRVPEAAETL 43 (81)
T ss_pred CCCHhHHHHHHHHHHCCCceEEEEC--CCCHHHHHHH
Confidence 3349999999999999999875533 3445444443
No 331
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=49.29 E-value=1.2e+02 Score=26.77 Aligned_cols=56 Identities=7% Similarity=-0.008 Sum_probs=46.1
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHHhhcCceEEEEe
Q 028883 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 65 mGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRt-p~~l~~~~~~~~~~g~~ViIa~ 120 (202)
.-..+|++.+.++.+..++.|....+.+..++|. ++.+.++++.+.+-|++.|..+
T Consensus 102 ~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~ 158 (266)
T cd07944 102 AFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV 158 (266)
T ss_pred ecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 3366899999999999999999888888888877 5888899999988888754443
No 332
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=49.23 E-value=1.2e+02 Score=23.39 Aligned_cols=95 Identities=8% Similarity=-0.015 Sum_probs=61.7
Q ss_pred EEecCCCCHHHHHHHHHHHHHh--CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEE-Ee--cCCcCchhhhhhhccCC
Q 028883 63 IIMESDLDLPVMNDAARTLSDF--GVPYEIKILPPHQNCKEALSYALSAKERGIKIII-VG--DGVEAHLSGVAAANSQI 137 (202)
Q Consensus 63 IimGS~SD~~v~~~a~~~L~~~--gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViI-a~--AG~aa~LpgvvA~~T~~ 137 (202)
.++++++|.+.+.+.++.|.++ |....- ++.+.+++++. .|+.|-. -+ .|+..++-.++-....-
T Consensus 3 ~l~a~d~dK~~~~~~a~~~~~ll~Gf~i~A--------T~gTa~~L~~~--~Gi~v~~vk~~~~~g~~~i~~~i~~g~i~ 72 (115)
T cd01422 3 ALIAHDNKKEDLVEFVKQHQELLSRHRLVA--------TGTTGLLIQEA--TGLTVNRMKSGPLGGDQQIGALIAEGEID 72 (115)
T ss_pred eEEecccchHHHHHHHHHHHHHhcCCEEEE--------echHHHHHHHh--hCCcEEEEecCCCCchhHHHHHHHcCcee
Confidence 4678999999999999999998 875322 23355555432 3554322 34 56667777777777777
Q ss_pred cEEEecCC-CC---CCChhhH-HHhhcCCCCCeeeEE
Q 028883 138 LVIRVPLL-SE---DWSEDDV-INSIRMPSHVQVASV 169 (202)
Q Consensus 138 PVIgVP~~-~~---~l~G~DL-lS~vqMP~GvpVatV 169 (202)
=||..|-+ +. .-+|..| -..++ -++|+.|-
T Consensus 73 ~VInt~~~~~~~~~~~dg~~iRr~a~~--~~Ip~~Tt 107 (115)
T cd01422 73 AVIFFRDPLTAQPHEPDVKALLRLCDV--YNIPLATN 107 (115)
T ss_pred EEEEcCCCCCCCcccccHHHHHHHHHH--cCCCEEEc
Confidence 79999875 32 3356663 33333 68998773
No 333
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=48.98 E-value=1.3e+02 Score=24.53 Aligned_cols=60 Identities=23% Similarity=0.176 Sum_probs=40.3
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc-CCCchHHHHHHHHHhhcCce
Q 028883 56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP-HQNCKEALSYALSAKERGIK 115 (202)
Q Consensus 56 ~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa-HRtp~~l~~~~~~~~~~g~~ 115 (202)
.+.++|.|++|+-.-=.-.--+++.|...|+++++.+..- .+..+......+.+++-|.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIK 83 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-E
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCc
Confidence 3457999999999888888889999999999877755543 34444455555555554433
No 334
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=48.90 E-value=1e+02 Score=27.21 Aligned_cols=61 Identities=11% Similarity=0.164 Sum_probs=49.0
Q ss_pred HHHhCCCeEEEEEc----cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEe
Q 028883 81 LSDFGVPYEIKILP----PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRV 142 (202)
Q Consensus 81 L~~~gi~~ev~V~S----aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgV 142 (202)
+++||+... .+.+ .=-+|..+.++++..++.++++|++-...+.-+.-.++..+..+|+-+
T Consensus 193 ~~~~gl~~~-~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v~~l 257 (286)
T cd01019 193 EKRYGLTQA-GVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQFHPKIAETLAEGTGAKVGEL 257 (286)
T ss_pred HHHcCCcee-eeecCCCCCCCCHHHHHHHHHHHHHcCCcEEEecCCCChHHHHHHHHhcCceEEEe
Confidence 367999743 2222 224688899999999999999999999999999999999998888766
No 335
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=48.73 E-value=44 Score=30.43 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=51.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC-CeEEEEEccC-----CCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGV-PYEIKILPPH-----QNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA 132 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi-~~ev~V~SaH-----Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA 132 (202)
..+.|++|...|-.......+ .|++ ..++.+-+-- .+..-+.++.+.++....+++|+..=....|++.+|
T Consensus 10 ~~~li~tG~H~~~~~g~~~~~---~f~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Pd~Vlv~GD~~~~la~ala 86 (346)
T PF02350_consen 10 ELILIVTGQHLDPEMGDTFFE---GFGIPKPDYLLDSDSQSMAKSTGLAIIELADVLEREKPDAVLVLGDRNEALAAALA 86 (346)
T ss_dssp EEEEEEECSS--CHHHHHHHH---HTT--SEEEE--STTS-HHHHHHHHHHHHHHHHHHHT-SEEEEETTSHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHh---hCCCCCCCcccccccchHHHHHHHHHHHHHHHHHhcCCCEEEEEcCCchHHHHHHH
Confidence 368899999999888877555 8998 4555554222 222233444455555667999988888888987776
Q ss_pred h-ccCCcEEEec
Q 028883 133 A-NSQILVIRVP 143 (202)
Q Consensus 133 ~-~T~~PVIgVP 143 (202)
+ ....||+.+=
T Consensus 87 A~~~~ipv~Hie 98 (346)
T PF02350_consen 87 AFYLNIPVAHIE 98 (346)
T ss_dssp HHHTT-EEEEES
T ss_pred HHHhCCCEEEec
Confidence 6 5899999864
No 336
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.47 E-value=67 Score=29.25 Aligned_cols=54 Identities=19% Similarity=0.203 Sum_probs=43.5
Q ss_pred CeEEEEecCCCCHHH-HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDLPV-MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~v-~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+-.. ++...+.++++|+.++..-.+..-+.+++.+.++++.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 88 (284)
T PRK14179 34 GLVVILVGDNPASQVYVRNKERSALAAGFKSEVVRLPETISQEELLDLIERYNQD 88 (284)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467777887766554 445678899999999999999888899999999988654
No 337
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.40 E-value=29 Score=31.69 Aligned_cols=49 Identities=10% Similarity=0.158 Sum_probs=32.4
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
+|...|+....+.++.++ ++++|++.|..+-+.+=.--. -.=||-|=+.
T Consensus 181 TVtichs~T~~l~~~~~~-----ADIvIsAvGkp~~i~~~~vk~-GavVIDVGin 229 (287)
T PRK14173 181 TVTLAHSKTQDLPAVTRR-----ADVLVVAVGRPHLITPEMVRP-GAVVVDVGIN 229 (287)
T ss_pred EEEEeCCCCCCHHHHHhh-----CCEEEEecCCcCccCHHHcCC-CCEEEEccCc
Confidence 566668777788877654 799999999998775422211 1226666554
No 338
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.37 E-value=59 Score=29.59 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=43.6
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+ .-+.+...+.++++||.++..-.+..-+.+++.+.++++.++
T Consensus 33 ~La~I~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (282)
T PRK14180 33 KLVAIIVGNDPASKTYVASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNND 87 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 577888886654 445556678889999999999999999999999999988654
No 339
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=48.20 E-value=51 Score=25.34 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=52.9
Q ss_pred ecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh--hccCCcEEEe
Q 028883 65 MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA--ANSQILVIRV 142 (202)
Q Consensus 65 mGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA--~~T~~PVIgV 142 (202)
.|+-|=--.+++..+.+++-|+++++.-++.- ++.++. +++++|+.+.-..-.+.-+-. .....||.-+
T Consensus 8 ~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~----e~~~~~-----~~~Dvill~PQv~~~~~~i~~~~~~~~ipv~~I 78 (99)
T cd05565 8 AGGGTSGLLANALNKGAKERGVPLEAAAGAYG----SHYDMI-----PDYDLVILAPQMASYYDELKKDTDRLGIKLVTT 78 (99)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHH----HHHHhc-----cCCCEEEEcChHHHHHHHHHHHhhhcCCCEEEe
Confidence 44556666789999999999999998766652 233322 347888887777777776653 3345688777
Q ss_pred cCCC-C--CCChhh
Q 028883 143 PLLS-E--DWSEDD 153 (202)
Q Consensus 143 P~~~-~--~l~G~D 153 (202)
|... + .++|--
T Consensus 79 ~~~~Yg~~~~dg~~ 92 (99)
T cd05565 79 TGKQYIELTRDPDG 92 (99)
T ss_pred CHHHHhHHhCCHHH
Confidence 7643 2 345544
No 340
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=48.13 E-value=30 Score=31.73 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=28.2
Q ss_pred hHHHHHHHHHhhcCceEEEEecCCcCchhhh-hhhccCCcEEEecCCC
Q 028883 100 KEALSYALSAKERGIKIIIVGDGVEAHLSGV-AAANSQILVIRVPLLS 146 (202)
Q Consensus 100 ~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv-vA~~T~~PVIgVP~~~ 146 (202)
+...+.++..++.+++.+|++-|-.. +-+. .=+...+||||||-.-
T Consensus 81 ~~~~~~~~~l~~~~Id~LivIGGdgS-~~~a~~L~~~gi~vigiPkTI 127 (324)
T TIGR02483 81 DGDDKIVANLKELGLDALIAIGGDGT-LGIARRLADKGLPVVGVPKTI 127 (324)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCchH-HHHHHHHHhcCCCEEeecccc
Confidence 45666777777777776766644433 3222 1122359999999874
No 341
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=48.02 E-value=28 Score=31.63 Aligned_cols=49 Identities=18% Similarity=0.257 Sum_probs=31.8
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
+|...|.....+.++.++ ++++|++.|...-+.+=.--.- .=||-|=+.
T Consensus 182 tVtichs~T~~l~~~~~~-----ADIvI~AvG~p~~i~~~~vk~G-avVIDvGin 230 (282)
T PRK14169 182 TVTIAHSKTRNLKQLTKE-----ADILVVAVGVPHFIGADAVKPG-AVVIDVGIS 230 (282)
T ss_pred EEEEECCCCCCHHHHHhh-----CCEEEEccCCcCccCHHHcCCC-cEEEEeecc
Confidence 666778666778777654 7999999999887654221111 126666554
No 342
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=47.88 E-value=43 Score=22.69 Aligned_cols=29 Identities=17% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEccCC
Q 028883 69 LDLPVMNDAARTLSDFGVPYEIKILPPHQ 97 (202)
Q Consensus 69 SD~~v~~~a~~~L~~~gi~~ev~V~SaHR 97 (202)
..-+.+.++...|++.|++||..-...+.
T Consensus 7 ~~~p~~~rv~~~L~~~gl~~e~~~v~~~~ 35 (71)
T cd03060 7 RRCPYAMRARMALLLAGITVELREVELKN 35 (71)
T ss_pred CCCcHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 34468899999999999999986665543
No 343
>PRK07475 hypothetical protein; Provisional
Probab=47.53 E-value=60 Score=28.27 Aligned_cols=76 Identities=21% Similarity=0.257 Sum_probs=0.0
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE---EEEccCC---------------C----chHHHHHHHHHhhc--Cc
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEI---KILPPHQ---------------N----CKEALSYALSAKER--GI 114 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev---~V~SaHR---------------t----p~~l~~~~~~~~~~--g~ 114 (202)
.+|+|++-...++. .+.|+..|++.++ .+.+.-. . .+.+.+.++++.++ ++
T Consensus 123 ~kIGILtt~~t~l~-----~~~l~~~Gi~~~~~~~~~~g~e~~~~~~~~I~~~~~~~d~~~~~~~l~~~~~~l~~~~~~~ 197 (245)
T PRK07475 123 QKVGILTADASSLT-----PAHLLAVGVPPDTSSLPIAGLEEGGEFRRNILENRGELDNEAAEQEVVAAARALLERHPDI 197 (245)
T ss_pred CeEEEEeCCchhhh-----HHHHHhCCCCCCCccccccCcccchHHHHHHhcccccccHHHHHHHHHHHHHHHHhhCCCC
Q ss_pred e-EEEEecCCcCchhhhhhhccCCcEE
Q 028883 115 K-IIIVGDGVEAHLSGVAAANSQILVI 140 (202)
Q Consensus 115 ~-ViIa~AG~aa~LpgvvA~~T~~PVI 140 (202)
+ ||+.|..+.-.++ -+...+.+|||
T Consensus 198 daIvL~CTeLp~~~~-~le~~~glPVi 223 (245)
T PRK07475 198 GAIVLECTNMPPYAA-AIQRATGLPVF 223 (245)
T ss_pred CEEEEcCcChHHHHH-HHHHhcCCCEE
No 344
>cd06353 PBP1_BmpA_Med_like Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Periplasmic binding domain of the basic membrane lipoprotein Med in Bacillus and its close homologs from other bacteria and Archaea. Med, a cell-surface localized protein, which regulates the competence transcription factor gene comK in Bacillus subtilis, lacks the DNA binding domain when compared with structures of transcription regulators from the LacI family. Nevertheless, Med has significant overall sequence homology to various periplasmic substrate-binding proteins. Moreover, the structure of Med shows a striking similarity to PnrA, a periplasmic nucleoside binding protein of an ATP-binding cassette transport system. Members of this group contain the type I periplasmic sugar-binding protein-like fold.
Probab=47.28 E-value=1.3e+02 Score=25.86 Aligned_cols=57 Identities=11% Similarity=0.014 Sum_probs=37.0
Q ss_pred EEecCCCCHHHHH---HHHHHH-HHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 63 IIMESDLDLPVMN---DAARTL-SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 63 IimGS~SD~~v~~---~a~~~L-~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
++.|+..|...-+ +..+-+ +++|+++++.-.. ..++...+.++++.++|+++||+..
T Consensus 5 l~~g~~~D~~~n~~~~~G~~~~~~~~gv~~~~~e~~--~~~~~~~~~i~~~~~~g~dlIi~~g 65 (258)
T cd06353 5 VYVGPIGDQGWNYAHDEGRKAAEKALGVEVTYVENV--PEGADAERVLRELAAQGYDLIFGTS 65 (258)
T ss_pred EEeCCCCccchhHHHHHHHHHHHHhcCCeEEEEecC--CchHhHHHHHHHHHHcCCCEEEECc
Confidence 4457777754433 333333 4588865554322 2678888888888888999888843
No 345
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=47.26 E-value=74 Score=23.29 Aligned_cols=59 Identities=22% Similarity=0.288 Sum_probs=43.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
..+.++....-|=+. ++.+++.||+. .++-.|-+...+.+.++++..+ +|..+.|+.-|
T Consensus 10 ~~~~~lvS~s~DGe~---ia~~~~~~G~~-~iRGSs~rgg~~Alr~~~~~lk-~G~~~~itpDG 68 (74)
T PF04028_consen 10 RKIAALVSRSRDGEL---IARVLERFGFR-TIRGSSSRGGARALREMLRALK-EGYSIAITPDG 68 (74)
T ss_pred CCEEEEEccCcCHHH---HHHHHHHcCCC-eEEeCCCCcHHHHHHHHHHHHH-CCCeEEEeCCC
Confidence 356666666667555 56778999986 5677777777788888887776 67889888766
No 346
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=46.79 E-value=1.9e+02 Score=26.13 Aligned_cols=35 Identities=14% Similarity=0.243 Sum_probs=19.7
Q ss_pred hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 84 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 84 ~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
..+|.-+++.. + ...+.++++.+++.|++-|++..
T Consensus 162 ~~iPv~vKl~p-~--~~~~~~~a~~l~~~Gadgi~~~n 196 (325)
T cd04739 162 VTIPVAVKLSP-F--FSALAHMAKQLDAAGADGLVLFN 196 (325)
T ss_pred cCCCEEEEcCC-C--ccCHHHHHHHHHHcCCCeEEEEc
Confidence 45666666532 1 22455666666666777665544
No 347
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=46.72 E-value=84 Score=26.38 Aligned_cols=104 Identities=15% Similarity=0.095 Sum_probs=64.5
Q ss_pred eEEEEecCCCC--------------HHHHHHHHHHHHHhCCCeEEEEEc-cCCCchHHHHHHHHHhhcCceEEEEecCCc
Q 028883 60 IVGIIMESDLD--------------LPVMNDAARTLSDFGVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (202)
Q Consensus 60 ~V~IimGS~SD--------------~~v~~~a~~~L~~~gi~~ev~V~S-aHRtp~~l~~~~~~~~~~g~~ViIa~AG~a 124 (202)
.+.-+.-+.|| ++.++++.+..+++|....+.... ..-+|+++.++++.+.+-|.+.|..+--.-
T Consensus 82 ~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G 161 (237)
T PF00682_consen 82 DIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVG 161 (237)
T ss_dssp SEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS
T ss_pred CEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccC
Confidence 35566678899 888899999999999988777644 455788899999998887887665554444
Q ss_pred Cchhhhhhh-------ccCCcEEEecCCCCCCChhh-HHHhhcCCCCCe
Q 028883 125 AHLSGVAAA-------NSQILVIRVPLLSEDWSEDD-VINSIRMPSHVQ 165 (202)
Q Consensus 125 a~LpgvvA~-------~T~~PVIgVP~~~~~l~G~D-LlS~vqMP~Gvp 165 (202)
...|--+.. ..+.-.|++=.-....-++. .+.-++ .|+-
T Consensus 162 ~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~--aGa~ 208 (237)
T PF00682_consen 162 IMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALE--AGAD 208 (237)
T ss_dssp -S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHH--TT-S
T ss_pred CcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHH--cCCC
Confidence 444443322 22223555544433223444 566666 4543
No 348
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=46.54 E-value=1e+02 Score=21.74 Aligned_cols=57 Identities=16% Similarity=0.206 Sum_probs=34.2
Q ss_pred hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh--------hhhhhccCCcEEEec
Q 028883 84 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS--------GVAAANSQILVIRVP 143 (202)
Q Consensus 84 ~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp--------gvvA~~T~~PVIgVP 143 (202)
.+..........-...+.+.+++ ++.+++.||.++-..+.+. --+.-+++.||+-||
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~---~~~~~dliv~G~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 140 (140)
T PF00582_consen 76 EGGIVIEVVIESGDVADAIIEFA---EEHNADLIVMGSRGRSGLERLLFGSVAEKLLRHAPCPVLVVP 140 (140)
T ss_dssp HTTSEEEEEEEESSHHHHHHHHH---HHTTCSEEEEESSSTTSTTTSSSHHHHHHHHHHTSSEEEEEE
T ss_pred hccceeEEEEEeeccchhhhhcc---ccccceeEEEeccCCCCccCCCcCCHHHHHHHcCCCCEEEeC
Confidence 45555555555445455555554 4567887777766633333 234457889998886
No 349
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=46.32 E-value=1.2e+02 Score=25.05 Aligned_cols=45 Identities=18% Similarity=0.053 Sum_probs=27.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~ 109 (202)
+++++|+|+++ .+...+++.|-+-|. + |+...|.++++.+..++.
T Consensus 9 ~k~~lItGas~--giG~~ia~~L~~~G~--~--vvl~~r~~~~~~~~~~~l 53 (254)
T PRK08085 9 GKNILITGSAQ--GIGFLLATGLAEYGA--E--IIINDITAERAELAVAKL 53 (254)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHcCC--E--EEEEcCCHHHHHHHHHHH
Confidence 46888999887 445666666666664 2 333456666655554433
No 350
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=46.24 E-value=42 Score=29.92 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=39.9
Q ss_pred CCCeEEEE---ecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 57 DAPIVGII---MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 57 ~~~~V~Ii---mGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
+.++|+.| .+...|-+.+++.++.|+++|+. |.+.|+.-.-+..+.+...+ .++|.++.|.
T Consensus 31 ~~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~lg~~----v~~L~l~~~~~~~Ie~~l~~--~d~IyVgGGN 94 (224)
T COG3340 31 KRKTIAFIPTASVDSEDDFYVEKVRNALAKLGLE----VSELHLSKPPLAAIENKLMK--ADIIYVGGGN 94 (224)
T ss_pred CCceEEEEecCccccchHHHHHHHHHHHHHcCCe----eeeeeccCCCHHHHHHhhhh--ccEEEECCch
Confidence 34567766 56667788999999999999985 44555555555555443333 4666655553
No 351
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=46.15 E-value=1.2e+02 Score=22.27 Aligned_cols=67 Identities=27% Similarity=0.250 Sum_probs=42.5
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeE--------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 62 GIIMESDLDLPVMNDAARTLSDFGVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 62 ~IimGS~SD~~v~~~a~~~L~~~gi~~e--------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
.++.|+..=...+++.+..|+.+|.+.. +-++|..+....+.+.++.+..+|++++....
T Consensus 16 i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 16 IYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITD 95 (139)
T ss_pred EEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 3455555556788999999998887532 34566666666677777777777766544443
Q ss_pred CCcCchh
Q 028883 122 GVEAHLS 128 (202)
Q Consensus 122 G~aa~Lp 128 (202)
-..+.|.
T Consensus 96 ~~~~~l~ 102 (139)
T cd05013 96 SANSPLA 102 (139)
T ss_pred CCCChhH
Confidence 3444333
No 352
>PRK07063 short chain dehydrogenase; Provisional
Probab=45.99 E-value=1.3e+02 Score=24.81 Aligned_cols=42 Identities=14% Similarity=0.094 Sum_probs=24.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYA 106 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~ 106 (202)
+++++|+|+++ .+...+++.|-+-|. + |+-..|.++++.+..
T Consensus 7 ~k~vlVtGas~--gIG~~~a~~l~~~G~--~--vv~~~r~~~~~~~~~ 48 (260)
T PRK07063 7 GKVALVTGAAQ--GIGAAIARAFAREGA--A--VALADLDAALAERAA 48 (260)
T ss_pred CCEEEEECCCc--hHHHHHHHHHHHCCC--E--EEEEeCCHHHHHHHH
Confidence 46788888887 445666666666664 2 233345555544443
No 353
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=45.93 E-value=55 Score=27.64 Aligned_cols=79 Identities=11% Similarity=-0.023 Sum_probs=56.8
Q ss_pred EecCCCC-HHHHHHHHHHHHHhCC---------CeEEEEEccCCCchHHHHHHHHHhh------cCceEEEEecCCcCch
Q 028883 64 IMESDLD-LPVMNDAARTLSDFGV---------PYEIKILPPHQNCKEALSYALSAKE------RGIKIIIVGDGVEAHL 127 (202)
Q Consensus 64 imGS~SD-~~v~~~a~~~L~~~gi---------~~ev~V~SaHRtp~~l~~~~~~~~~------~g~~ViIa~AG~aa~L 127 (202)
.+|-.+| +.+..++...|..-+- ++.+.....++.|+++..+.+.+.. ..+++|++++-+.--+
T Consensus 20 ~~~~ia~el~vs~~t~~~l~~~~~~~~~~~~~~~~yid~~~~~~~~~~l~~i~~~la~~i~~~~~~~D~Ivgi~~gG~~~ 99 (200)
T PRK02277 20 STGEIADELNVSRETATWLLTRAKKLEKAPAPKDIHIDWSSIGSSSSRLRYIASAMADMLEKEDEEVDVVVGIAKSGVPL 99 (200)
T ss_pred ChhhhhhhhcchHHHHHHHHhcccCCCCCCCCCCEEEEChhhccCHHHHHHHHHHHHHHHHhcCCCCCEEEeeccCCHHH
Confidence 3444555 6688888888864221 3556677889999888766655533 3468999999998899
Q ss_pred hhhhhhccCCcEEEe
Q 028883 128 SGVAAANSQILVIRV 142 (202)
Q Consensus 128 pgvvA~~T~~PVIgV 142 (202)
+..+|-....|..-+
T Consensus 100 A~~lA~~L~~~~~~~ 114 (200)
T PRK02277 100 ATLVADELGKDLAIY 114 (200)
T ss_pred HHHHHHHhCCCcEEE
Confidence 999999888886443
No 354
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.87 E-value=75 Score=28.90 Aligned_cols=54 Identities=13% Similarity=0.190 Sum_probs=44.3
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+-. +++--.+.++++||.++..-.+..=+.+++.+.++++.++
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d 88 (278)
T PRK14172 34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDESISEEDLINEIEELNKD 88 (278)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56778888777665 5556678889999999999999998899999999888654
No 355
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.86 E-value=30 Score=31.46 Aligned_cols=61 Identities=16% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 75 ~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
+..+..|...| .+|...|+..+.+.++.++ ++++|++.|...-+.+=.=- -..=||.|=+.
T Consensus 172 kPla~lL~~~~----atVt~~hs~t~~l~~~~~~-----ADIVV~avG~~~~i~~~~ik-~gavVIDVGin 232 (285)
T PRK14189 172 KPMAMLLLQAG----ATVTICHSKTRDLAAHTRQ-----ADIVVAAVGKRNVLTADMVK-PGATVIDVGMN 232 (285)
T ss_pred HHHHHHHHHCC----CEEEEecCCCCCHHHHhhh-----CCEEEEcCCCcCccCHHHcC-CCCEEEEcccc
Confidence 34444444444 2555568777778777653 79999999987665541111 11226666554
No 356
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=45.85 E-value=1.6e+02 Score=23.87 Aligned_cols=79 Identities=8% Similarity=0.069 Sum_probs=44.6
Q ss_pred EEEEecCC-CC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883 61 VGIIMESD-LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 136 (202)
Q Consensus 61 V~IimGS~-SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~ 136 (202)
|++|.-+. ++ ....+.+.+.++++|+. +.+...=..+++..++++....++++-+|...-....+.-. ...-.
T Consensus 2 ig~v~~~~~~~~~~~~~~~~i~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~-~~~~~ 78 (269)
T cd06288 2 IGLISDEIATTPFAVEIILGAQDAAREHGYL--LLVVNTGGDDELEAEAVEALLDHRVDGIIYATMYHREVTLP-PELLS 78 (269)
T ss_pred eEEEeCCCCCCccHHHHHHHHHHHHHHCCCE--EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCCCChhHHH-HHhcC
Confidence 66777554 33 23445666778888864 44444334556666777777777887666544332323211 22235
Q ss_pred CcEEEe
Q 028883 137 ILVIRV 142 (202)
Q Consensus 137 ~PVIgV 142 (202)
.||+.+
T Consensus 79 ipvv~~ 84 (269)
T cd06288 79 VPTVLL 84 (269)
T ss_pred CCEEEE
Confidence 677654
No 357
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=45.71 E-value=1.1e+02 Score=22.45 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhc
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAAN 134 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~ 134 (202)
..++++.+.++++++++. +..-+.-.+.+ .+.+++.+++.+|.++-+.+.+...+-|.
T Consensus 49 ~~l~~~~~~~~~~~~~~~--~~~~~~~~~~I---~~~~~~~~~dllviG~~~~~~~~~~~~Gs 106 (124)
T cd01987 49 RRLAEALRLAEELGAEVV--TLPGDDVAEAI---VEFAREHNVTQIVVGKSRRSRWRELFRGS 106 (124)
T ss_pred HHHHHHHHHHHHcCCEEE--EEeCCcHHHHH---HHHHHHcCCCEEEeCCCCCchHHHHhccc
Confidence 345566667777777543 22222222334 44445567888888888777777665554
No 358
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=45.24 E-value=35 Score=34.04 Aligned_cols=48 Identities=17% Similarity=0.118 Sum_probs=33.2
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh-----ccCCcEEEecCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 145 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~-----~T~~PVIgVP~~ 145 (202)
+++...+..+..++.+++.+|.+.|-... -+-.++- ....+|||||-.
T Consensus 175 ~~e~~~~~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKT 228 (568)
T PLN02251 175 TPEQFKQAEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKT 228 (568)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCce
Confidence 45778888888999899877777664322 2223332 356999999986
No 359
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.95 E-value=38 Score=30.84 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=26.1
Q ss_pred EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh
Q 028883 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (202)
Q Consensus 90 v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg 129 (202)
-+|...|.....+.++.++ ++++|++.|...-+.+
T Consensus 183 atVt~chs~t~~l~~~~~~-----ADIvI~AvG~p~~i~~ 217 (284)
T PRK14190 183 ATVTYCHSKTKNLAELTKQ-----ADILIVAVGKPKLITA 217 (284)
T ss_pred CEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcCCH
Confidence 3566678888888877653 7999999998875543
No 360
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=44.94 E-value=69 Score=24.94 Aligned_cols=99 Identities=12% Similarity=0.101 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc----CchhhhhhhccCCcEE--EecCCCCC
Q 028883 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE----AHLSGVAAANSQILVI--RVPLLSED 148 (202)
Q Consensus 75 ~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a----a~LpgvvA~~T~~PVI--gVP~~~~~ 148 (202)
.-.+..|+++|..... ..-..-.++.+.+.++++.++ +++||...|.+ .+.+-++.......+- ++|...+.
T Consensus 22 ~~l~~~l~~~G~~v~~-~~~v~Dd~~~i~~~i~~~~~~-~DlvittGG~g~g~~D~t~~ai~~~g~~~~~g~~~~~~pg~ 99 (133)
T cd00758 22 PALEALLEDLGCEVIY-AGVVPDDADSIRAALIEASRE-ADLVLTTGGTGVGRRDVTPEALAELGEREAHGKGVALAPGS 99 (133)
T ss_pred HHHHHHHHHCCCEEEE-eeecCCCHHHHHHHHHHHHhc-CCEEEECCCCCCCCCcchHHHHHHhcCEEeccCcccccCCC
Confidence 3455668899965432 223456778888887777554 78888875543 5778888777666666 56654332
Q ss_pred CChhhHHHhhcCCCCCeeeEEecCChhhHHHHHHH
Q 028883 149 WSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVK 183 (202)
Q Consensus 149 l~G~DLlS~vqMP~GvpVatV~I~n~~NAAl~Aa~ 183 (202)
-. ++..+ .|.|+ ++.-+.-+|+..+..
T Consensus 100 ~~---~~~~~---~~~~i--~~LPG~p~a~~~~~~ 126 (133)
T cd00758 100 RT---AFGII---GKVLI--INLPGSPKSALTTFE 126 (133)
T ss_pred ce---EEEEE---CCEEE--EECCCCHHHHHHHHH
Confidence 11 11111 23333 555566666655543
No 361
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.89 E-value=1.4e+02 Score=24.46 Aligned_cols=26 Identities=12% Similarity=0.134 Sum_probs=16.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi 86 (202)
.++.+|+|+++ .+...+++.|-+-|.
T Consensus 7 ~~~vlItGasg--~iG~~la~~l~~~G~ 32 (262)
T PRK13394 7 GKTAVVTGAAS--GIGKEIALELARAGA 32 (262)
T ss_pred CCEEEEECCCC--hHHHHHHHHHHHCCC
Confidence 46778888887 445556666655554
No 362
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.87 E-value=77 Score=28.92 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=46.3
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEE
Q 028883 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa 119 (202)
.++.|..|.+ ++.-+.+...+.++++||.++..-.+..-+.+++.+.++++.++ ..+=||.
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 95 (285)
T PRK14191 33 KLAVILVGKDPASQTYVNMKIKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILV 95 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4566666655 44556677788899999999999999999999999999988654 2343443
No 363
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=44.86 E-value=2.4e+02 Score=25.58 Aligned_cols=49 Identities=20% Similarity=0.199 Sum_probs=34.1
Q ss_pred CCCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEE
Q 028883 67 SDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 67 S~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa 119 (202)
++.|+. ..+....+.+.+.+|.-++..+.--++ +.++.+++.|++.|++
T Consensus 159 ~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~----~~a~~l~~~Gvd~I~v 208 (326)
T cd02811 159 GDRDFRGWLERIEELVKALSVPVIVKEVGFGISR----ETAKRLADAGVKAIDV 208 (326)
T ss_pred CCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCH----HHHHHHHHcCCCEEEE
Confidence 456774 557788888889999999887653333 4445555678887765
No 364
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.85 E-value=78 Score=28.84 Aligned_cols=54 Identities=17% Similarity=0.193 Sum_probs=43.8
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.|- -+.+.-.+.++++||.++..-.+..-+-+++.+.++++.++
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 86 (282)
T PRK14169 32 TLAVVLVGSDPASEVYVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHD 86 (282)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4777888877554 45566678889999999999999999999999999988654
No 365
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=44.83 E-value=78 Score=25.95 Aligned_cols=27 Identities=15% Similarity=0.245 Sum_probs=24.7
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccC
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPH 96 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaH 96 (202)
..|.++++..+|+.+||+|+.+=+|.|
T Consensus 15 t~~~C~~ak~iL~~~~V~~~e~DVs~~ 41 (147)
T cd03031 15 TFEDCNNVRAILESFRVKFDERDVSMD 41 (147)
T ss_pred cChhHHHHHHHHHHCCCcEEEEECCCC
Confidence 789999999999999999998877776
No 366
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.79 E-value=1.3e+02 Score=27.13 Aligned_cols=54 Identities=11% Similarity=0.084 Sum_probs=42.9
Q ss_pred CeEEEEecCCCCHHHHHH-HHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDLPVMND-AARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~-a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+-....+ -.+.++++|+++++.-.+.+-+++.+.++++++.+.
T Consensus 35 ~L~~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d 89 (283)
T PRK14192 35 ILATILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNAN 89 (283)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467777787766555544 456678899999999999999999999999988765
No 367
>COG0011 Uncharacterized conserved protein [Function unknown]
Probab=44.75 E-value=68 Score=25.14 Aligned_cols=47 Identities=15% Similarity=0.208 Sum_probs=36.8
Q ss_pred EEecCCCCHHHHHHHHHHHHHhCCCeEE----EEEccCCCchHHHHHHHHHhh
Q 028883 63 IIMESDLDLPVMNDAARTLSDFGVPYEI----KILPPHQNCKEALSYALSAKE 111 (202)
Q Consensus 63 IimGS~SD~~v~~~a~~~L~~~gi~~ev----~V~SaHRtp~~l~~~~~~~~~ 111 (202)
+-++++|=-++..+|.+.|+++|++|++ ++.=. ..+++.+.++.+.+
T Consensus 12 ~gt~~~svs~yVa~~i~~lk~~glky~~~pm~T~iEg--~~del~~~ik~~~E 62 (100)
T COG0011 12 LGTGGPSVSKYVAEAIEILKESGLKYQLGPMGTVIEG--ELDELMEAVKEAHE 62 (100)
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCceeecCcceEEEe--cHHHHHHHHHHHHH
Confidence 3346777689999999999999999986 34444 77888888887755
No 368
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=44.35 E-value=1.1e+02 Score=27.61 Aligned_cols=99 Identities=17% Similarity=0.097 Sum_probs=55.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC-cCchh---h-----
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV-EAHLS---G----- 129 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~-aa~Lp---g----- 129 (202)
+.+.+...+.-+.++ .+.|++.|+.+-..|.|. +. ++.+.+.|+|+||+-..- -+|.+ +
T Consensus 114 ~~~v~~~~G~p~~~~----i~~l~~~gi~v~~~v~s~----~~----A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L 181 (330)
T PF03060_consen 114 PDVVSFGFGLPPPEV----IERLHAAGIKVIPQVTSV----RE----ARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSL 181 (330)
T ss_dssp -SEEEEESSSC-HHH----HHHHHHTT-EEEEEESSH----HH----HHHHHHTT-SEEEEE-TTSSEE---SSG-HHHH
T ss_pred eEEEEeecccchHHH----HHHHHHcCCccccccCCH----HH----HHHhhhcCCCEEEEeccccCCCCCccccceeeH
Confidence 456666666655444 355778898776666543 22 344566889988876322 23444 1
Q ss_pred --hhhhccCCcEEEecCCCCCCChhhHHHhhcC-CCCCeeeEEecC
Q 028883 130 --VAAANSQILVIRVPLLSEDWSEDDVINSIRM-PSHVQVASVPRN 172 (202)
Q Consensus 130 --vvA~~T~~PVIgVP~~~~~l~G~DLlS~vqM-P~GvpVatV~I~ 172 (202)
.+....+.|||+ .++-.+|-++...+.| ..||-++|..+-
T Consensus 182 ~~~v~~~~~iPVia---AGGI~dg~~iaaal~lGA~gV~~GTrFl~ 224 (330)
T PF03060_consen 182 LPQVRDAVDIPVIA---AGGIADGRGIAAALALGADGVQMGTRFLA 224 (330)
T ss_dssp HHHHHHH-SS-EEE---ESS--SHHHHHHHHHCT-SEEEESHHHHT
T ss_pred HHHHhhhcCCcEEE---ecCcCCHHHHHHHHHcCCCEeecCCeEEe
Confidence 345566788886 3555677778888888 888777776443
No 369
>PRK15456 universal stress protein UspG; Provisional
Probab=44.32 E-value=95 Score=23.55 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=23.0
Q ss_pred HHHHHHHhhcCceEEEEecCCcCchhhh--------hhhccCCcEEEec
Q 028883 103 LSYALSAKERGIKIIIVGDGVEAHLSGV--------AAANSQILVIRVP 143 (202)
Q Consensus 103 ~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--------vA~~T~~PVIgVP 143 (202)
+++.+.+++.+++.||.++-+.+ +..+ +.-++++||.-|+
T Consensus 95 ~~I~~~a~~~~~DLIVmG~~g~~-~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 95 DEVNELAEELGADVVVIGSRNPS-ISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHHHHhhcCCCEEEEcCCCCC-ccceecCccHHHHHHcCCCCEEEeC
Confidence 33455555677888887765533 4332 2235677777653
No 370
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.32 E-value=78 Score=28.96 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=44.3
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.|- -+.+...+.++++||.+++.-.+..-+.+++.+.++++.++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (295)
T PRK14174 33 GLTVIIVGEDPASQVYVRNKAKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNND 87 (295)
T ss_pred eEEEEEeCCChHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5788888877654 45666778889999999999999999999999999988654
No 371
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.17 E-value=39 Score=30.78 Aligned_cols=52 Identities=15% Similarity=0.155 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+...+.++|+++|++++ -.|...|...+.+.++.++ ++++|++.|...-+
T Consensus 140 Tp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~~l~~~~~~-----ADIvV~AvGkp~~i 214 (281)
T PRK14183 140 TPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTKDLKAHTKK-----ADIVIVGVGKPNLI 214 (281)
T ss_pred cHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCcCHHHHHhh-----CCEEEEecCccccc
Q ss_pred hh
Q 028883 128 SG 129 (202)
Q Consensus 128 pg 129 (202)
.+
T Consensus 215 ~~ 216 (281)
T PRK14183 215 TE 216 (281)
T ss_pred CH
No 372
>PF07881 Fucose_iso_N1: L-fucose isomerase, first N-terminal domain; InterPro: IPR012888 Proteins containing this domain are similar to L-fucose isomerase expressed by Escherichia coli (P11552 from SWISSPROT, 5.3.1.3 from EC). This enzyme corresponds to glucose-6-phosphate isomerase in glycolysis, and converts an aldo-hexose to a ketose to prepare it for aldol cleavage. The enzyme is a hexamer, with each subunit being wedge-shaped and composed of three domains. Both domains 1 and 2 contain central parallel beta-sheets with surrounding alpha helices. Domain 1 demonstrates the beta-alpha-beta-alpha- beta Rossman fold. The active centre is shared between pairs of subunits related along the molecular three-fold axis, with domains 2 and 3 from one subunit providing most of the substrate-contacting residues, and domain 1 from the adjacent subunit contributing some other residues []. ; GO: 0008736 L-fucose isomerase activity, 0006004 fucose metabolic process, 0005737 cytoplasm; PDB: 3A9R_A 3A9T_C 3A9S_C 1FUI_E.
Probab=44.14 E-value=98 Score=26.60 Aligned_cols=85 Identities=20% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCeEEEEecCCCCHH------------HHHHHHHHHHHh-----CCCeEEEEEc-cCCCchHHHHHHHHHhhcCceEEEE
Q 028883 58 APIVGIIMESDLDLP------------VMNDAARTLSDF-----GVPYEIKILP-PHQNCKEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 58 ~~~V~IimGS~SD~~------------v~~~a~~~L~~~-----gi~~ev~V~S-aHRtp~~l~~~~~~~~~~g~~ViIa 119 (202)
.|+|+|+.=+|-..- .++.+++.|++- |-|.|+-|++ .-..+.+.....+++.+.+..+.|.
T Consensus 3 ~pkIGIrp~iDGR~~gVresLe~~tm~ma~~~a~ll~~~l~~~~G~~Ve~Viad~~Iggv~eAa~~ae~f~~~~V~~tit 82 (171)
T PF07881_consen 3 KPKIGIRPTIDGRRGGVRESLEEQTMNMAKAVAELLEENLRYPDGSPVECVIADTTIGGVAEAAACAEKFKREGVGVTIT 82 (171)
T ss_dssp --EEEEEEB----TTTHHHHHHHHHHHHHHHHHHHHHHH-B-TTS-B--EEE-SS-B-SHHHHHHHHHHHHCCTEEEEEE
T ss_pred CCeEEEEEeecCCchhHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeeEEEECCCcccCHHHHHHHHHHHHHcCCCEEEE
Confidence 478999887766543 566777777764 6677777766 5556777777888888888888777
Q ss_pred ecCC--cCchhhhhhhccCCcEEEe
Q 028883 120 GDGV--EAHLSGVAAANSQILVIRV 142 (202)
Q Consensus 120 ~AG~--aa~LpgvvA~~T~~PVIgV 142 (202)
+..- =.+..-..+-.++.|+.|.
T Consensus 83 vtpcWcy~~etmd~~~~~p~aiwgf 107 (171)
T PF07881_consen 83 VTPCWCYGSETMDMDPNTPKAIWGF 107 (171)
T ss_dssp EESS---HHHHS---TTS-EEEEE-
T ss_pred EEeeeecchhhhccCcCCCccEEee
Confidence 6543 2233333444556666653
No 373
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=44.06 E-value=1.2e+02 Score=26.84 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=43.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE--------------------------EEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE--------------------------IKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~e--------------------------v~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
++|+||+|+++=+- +.++..|-++|..+- ..+..-++..+..+++.++..++
T Consensus 8 gkvalVTG~s~GIG--~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~~ 85 (270)
T KOG0725|consen 8 GKVALVTGGSSGIG--KAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVEK 85 (270)
T ss_pred CcEEEEECCCChHH--HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHHH
Confidence 68999999998765 666677777776421 12333345566666666665443
Q ss_pred --C-ceEEEEecCCcCch
Q 028883 113 --G-IKIIIVGDGVEAHL 127 (202)
Q Consensus 113 --g-~~ViIa~AG~aa~L 127 (202)
| ++++|--||....-
T Consensus 86 ~~GkidiLvnnag~~~~~ 103 (270)
T KOG0725|consen 86 FFGKIDILVNNAGALGLT 103 (270)
T ss_pred hCCCCCEEEEcCCcCCCC
Confidence 3 68888877765533
No 374
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=43.87 E-value=2.2e+02 Score=24.74 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=43.8
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
+...|+++....++ ..+.+.+.+.++++|. ++-+...+..+++..++++.+..++++-||...
T Consensus 58 ~~~~Igvi~~~~~~~f~~~l~~gi~~~~~~~gy--~~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~ 123 (346)
T PRK10401 58 VSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQK--YVLIGNSYHEAEKERHAIEVLIRQRCNALIVHS 123 (346)
T ss_pred CCCEEEEEeCCCCCccHHHHHHHHHHHHHHCCC--EEEEEcCCCChHHHHHHHHHHHhcCCCEEEEeC
Confidence 34579999865444 2244556667777874 566777777888888888888777888666654
No 375
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.84 E-value=93 Score=28.45 Aligned_cols=61 Identities=18% Similarity=0.231 Sum_probs=46.9
Q ss_pred CeEEEEecCC-CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcC-ceEEEE
Q 028883 59 PIVGIIMESD-LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~-SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g-~~ViIa 119 (202)
.++.|..|.+ ++.-+++.-.+.++++||.++..-.+..-+.+++.+.++++.++. .+=||.
T Consensus 40 ~Laii~vg~d~aS~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlv 102 (287)
T PRK14176 40 GLATILVGDDPASKMYVRLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILL 102 (287)
T ss_pred eEEEEEECCCcchHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEE
Confidence 4677777765 455666777889999999999999999999999999999886542 343443
No 376
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=43.78 E-value=1.3e+02 Score=24.22 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh-hhhhhccCCcEEEe
Q 028883 84 FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS-GVAAANSQILVIRV 142 (202)
Q Consensus 84 ~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp-gvvA~~T~~PVIgV 142 (202)
.|.++++.+.-..-.|+...+.++++.++++++||...+.....+ .-.+.....|||..
T Consensus 37 ~g~~v~~~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~~~~~~~~~~~~~~~~ip~i~~ 96 (298)
T cd06268 37 LGRKIELVVEDTQGDPEAAAAAARELVDDGVDAVIGPLSSGVALAAAPVAEEAGVPLISP 96 (298)
T ss_pred CCeEEEEEEecCCCCHHHHHHHHHHHHhCCceEEEcCCcchhHHhhHHHHHhCCCcEEcc
Confidence 356677777777777888888888887777888775443332221 12334567899865
No 377
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=43.70 E-value=2.1e+02 Score=25.73 Aligned_cols=82 Identities=15% Similarity=0.123 Sum_probs=54.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHH-HhhcCceEEEEe----cCCcCchhhhh
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALS-AKERGIKIIIVG----DGVEAHLSGVA 131 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~-~~~~g~~ViIa~----AG~aa~Lpgvv 131 (202)
.++|-||... ++++.+.+=.+|+.--+.|.. .+-.|..+-..+.. .++.+.++|+++ .|-++++|.++
T Consensus 58 V~vlt~Gp~~----a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~l 133 (260)
T COG2086 58 VTVLTMGPPQ----AEEALREALAMGADRAILITDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLL 133 (260)
T ss_pred EEEEEecchh----hHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHH
Confidence 5666677654 444444466789987677763 34445555454443 345567777765 56789999999
Q ss_pred hhccCCcEEEecCC
Q 028883 132 AANSQILVIRVPLL 145 (202)
Q Consensus 132 A~~T~~PVIgVP~~ 145 (202)
|.+..+|++.-=-+
T Consensus 134 Ae~Lg~P~~t~v~~ 147 (260)
T COG2086 134 AELLGWPQVTYVSK 147 (260)
T ss_pred HHHhCCceeeeEEE
Confidence 99999999975443
No 378
>PRK06139 short chain dehydrogenase; Provisional
Probab=43.35 E-value=1.2e+02 Score=27.27 Aligned_cols=25 Identities=20% Similarity=0.206 Sum_probs=13.0
Q ss_pred chHHHHHHHHHhhc--CceEEEEecCC
Q 028883 99 CKEALSYALSAKER--GIKIIIVGDGV 123 (202)
Q Consensus 99 p~~l~~~~~~~~~~--g~~ViIa~AG~ 123 (202)
++.+.+++++.++. +++++|-.||.
T Consensus 68 ~~~v~~~~~~~~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 68 ADQVKALATQAASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 44444444444332 35777777764
No 379
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=43.30 E-value=1.2e+02 Score=21.59 Aligned_cols=69 Identities=14% Similarity=0.113 Sum_probs=47.4
Q ss_pred eEEEEecCCCCHH--HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 60 IVGIIMESDLDLP--VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 60 ~V~IimGS~SD~~--v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
+|++++|+.-... ..++..+.+++.+++.++..++. ..+.+ ..+.+++||...-... .+..
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~----~~~~~-----~~~~~Dliist~~~~~--------~~~~ 64 (89)
T cd05566 2 KILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKI----AEVPS-----LLDDADLIVSTTKVPE--------DYGI 64 (89)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecH----HHhhc-----ccCCCcEEEEcCCcCC--------CCCC
Confidence 6889998877776 46778899999999888765553 22222 1245898888655432 4567
Q ss_pred cEEEecCC
Q 028883 138 LVIRVPLL 145 (202)
Q Consensus 138 PVIgVP~~ 145 (202)
|+|-+.+-
T Consensus 65 p~i~v~~~ 72 (89)
T cd05566 65 PVINGLPF 72 (89)
T ss_pred CEEEEeec
Confidence 98888654
No 380
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=43.27 E-value=65 Score=27.59 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCC-------chHHHHHHHHHhhcCceEEEE
Q 028883 75 NDAARTLSDFGVPYEIKILPPHQN-------CKEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 75 ~~a~~~L~~~gi~~ev~V~SaHRt-------p~~l~~~~~~~~~~g~~ViIa 119 (202)
+++.+..+++.=.+|+-|++.|=. .++..+++..+.+.|+++||+
T Consensus 171 ~~i~~~i~~~r~~~D~vIv~~HwG~e~~~~p~~~q~~~a~~lidaGaDiIiG 222 (250)
T PF09587_consen 171 ERIKEDIREARKKADVVIVSLHWGIEYENYPTPEQRELARALIDAGADIIIG 222 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEEeccCCCCCCCCCHHHHHHHHHHHHcCCCEEEe
Confidence 666666666665689999999976 667888999998899999986
No 381
>PLN02564 6-phosphofructokinase
Probab=43.18 E-value=42 Score=32.92 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=38.6
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhh--hhh-----ccCCcEEEecCC
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAA-----NSQILVIRVPLL 145 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--vA~-----~T~~PVIgVP~~ 145 (202)
.+.+--|.+....+.++.+++.+++.+|++-| .+.+-|. ++- ..+++|||+|-.
T Consensus 154 TiLGTsR~~~~~~~iv~~L~~~~Id~LivIGG-DGS~~gA~~L~e~~~~~g~~i~VIGIPKT 214 (484)
T PLN02564 154 TILGTSRGGHDTSKIVDSIQDRGINQVYIIGG-DGTQKGASVIYEEIRRRGLKVAVAGIPKT 214 (484)
T ss_pred ceeccCCCcchHHHHHHHHHHhCCCEEEEECC-chHHHHHHHHHHHHHHcCCCceEEEeccc
Confidence 45666788888999999999999998888755 4444433 221 234569999975
No 382
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.16 E-value=84 Score=28.84 Aligned_cols=61 Identities=15% Similarity=0.050 Sum_probs=46.3
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcC-ceEEEE
Q 028883 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g-~~ViIa 119 (202)
.++.|..|.+.+-. +.+...+.++++||.+++.-.+..-+.+++.+.++++.++. .+=||.
T Consensus 35 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIiv 97 (297)
T PRK14168 35 GLVTILVGESPASLSYVTLKIKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILV 97 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 57788888776554 45556788899999999988888889999999999886543 344443
No 383
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.12 E-value=44 Score=30.46 Aligned_cols=50 Identities=10% Similarity=0.103 Sum_probs=33.3
Q ss_pred EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 90 v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
-+|...|.....+.++.++ ++++|++.|...-+..=.- .-..=||-|=+.
T Consensus 186 AtVt~~hs~t~~l~~~~~~-----ADIVI~AvG~p~li~~~~v-k~GavVIDVGi~ 235 (286)
T PRK14184 186 ATVTVCHSRTPDLAEECRE-----ADFLFVAIGRPRFVTADMV-KPGAVVVDVGIN 235 (286)
T ss_pred CEEEEEeCCchhHHHHHHh-----CCEEEEecCCCCcCCHHHc-CCCCEEEEeeee
Confidence 4688889888888888754 7999999988666543221 111226666554
No 384
>COG4002 Predicted phosphotransacetylase [General function prediction only]
Probab=43.11 E-value=76 Score=28.59 Aligned_cols=57 Identities=30% Similarity=0.357 Sum_probs=34.3
Q ss_pred CeEEEEecCCC---------C--HHHHHHHHHHHHHhCCCeE-EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883 59 PIVGIIMESDL---------D--LPVMNDAARTLSDFGVPYE-IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (202)
Q Consensus 59 ~~V~IimGS~S---------D--~~v~~~a~~~L~~~gi~~e-v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~ 126 (202)
|+|+|++|+-- | +.-.|..++.++..|+... .+|. + +++-++| .|||+.-|-.+-
T Consensus 138 p~VaVlSgGRlgDlGR~~~VDrtladgEfva~~~k~~g~~v~H~~IL--------I----Eealkdg-nvIia~dGItGN 204 (256)
T COG4002 138 PKVAVLSGGRLGDLGRNKEVDRTLADGEFVAEHFKGNGVDVIHYGIL--------I----EEALKDG-NVIIAVDGITGN 204 (256)
T ss_pred cceEEecCCcchhccCcchhhhhhhchHHHHHHHhccCceeEEeeeE--------H----HHHhhcC-CEEEEecCccch
Confidence 77888887631 2 2334455566666666532 3443 3 3344466 899999998776
Q ss_pred hh
Q 028883 127 LS 128 (202)
Q Consensus 127 Lp 128 (202)
|-
T Consensus 205 Li 206 (256)
T COG4002 205 LI 206 (256)
T ss_pred hh
Confidence 63
No 385
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=43.08 E-value=58 Score=29.35 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=44.5
Q ss_pred CeEEEEecCCC--CHHHHHHHHHHHHHhCCCeEEEEEccCCCc-hHHHHHHHHHhhcCceEEEEecCCcCchhhhhhh--
Q 028883 59 PIVGIIMESDL--DLPVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKIIIVGDGVEAHLSGVAAA-- 133 (202)
Q Consensus 59 ~~V~IimGS~S--D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp-~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~-- 133 (202)
.+|+|+.=..+ -.+.++++.+.|++.|+.+.+.-..+.... .....+..+...++++++|++ |+.+.+=.++-.
T Consensus 6 ~~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~-GGDGt~l~~~~~~~ 84 (291)
T PRK02155 6 KTVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVL-GGDGTMLGIGRQLA 84 (291)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEE-CCcHHHHHHHHHhc
Confidence 46888844333 334467777777777876544322221110 000001101112346777776 555554444432
Q ss_pred ccCCcEEEecCC
Q 028883 134 NSQILVIRVPLL 145 (202)
Q Consensus 134 ~T~~PVIgVP~~ 145 (202)
.+..|++||-+-
T Consensus 85 ~~~~pilGIn~G 96 (291)
T PRK02155 85 PYGVPLIGINHG 96 (291)
T ss_pred CCCCCEEEEcCC
Confidence 468899998874
No 386
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=42.97 E-value=96 Score=23.85 Aligned_cols=63 Identities=16% Similarity=0.086 Sum_probs=40.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCC------------------------eEEEEEccCCCchHHHHHHHHHhhcCce
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVP------------------------YEIKILPPHQNCKEALSYALSAKERGIK 115 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~------------------------~ev~V~SaHRtp~~l~~~~~~~~~~g~~ 115 (202)
.|+||=.|+.-......+...|.+.|.+ ..+.++-.-..|+.+.++++++.+.|++
T Consensus 2 siAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~~~~~~~~~~v~~~~~~g~~ 81 (116)
T PF13380_consen 2 SIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVCVPPDKVPEIVDEAAALGVK 81 (116)
T ss_dssp EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-S-HHHHHHHHHHHHHHT-S
T ss_pred EEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEEcCHHHHHHHHHHHHHcCCC
Confidence 4667666666577888888888888732 2234445556677888888888888898
Q ss_pred EEEEecC
Q 028883 116 IIIVGDG 122 (202)
Q Consensus 116 ViIa~AG 122 (202)
.++..+|
T Consensus 82 ~v~~~~g 88 (116)
T PF13380_consen 82 AVWLQPG 88 (116)
T ss_dssp EEEE-TT
T ss_pred EEEEEcc
Confidence 8888887
No 387
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=42.89 E-value=1.5e+02 Score=25.68 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=39.4
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCC-eEEEEEccC--------CCchHHHHHHHHHhhc-CceEEEEecC
Q 028883 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVP-YEIKILPPH--------QNCKEALSYALSAKER-GIKIIIVGDG 122 (202)
Q Consensus 57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~-~ev~V~SaH--------Rtp~~l~~~~~~~~~~-g~~ViIa~AG 122 (202)
+.|.++.|+|+ |.+...++++.+++.|+. .|+.+.+.| +.|+.+.++++...+. +..|++=+.+
T Consensus 98 ~~pvi~si~g~--~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~ 171 (289)
T cd02810 98 GQPLIASVGGS--SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP 171 (289)
T ss_pred CCeEEEEeccC--CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC
Confidence 34667777776 556677778888888876 677766654 2456666666655443 2344544443
No 388
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.81 E-value=79 Score=28.81 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=43.7
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+ .-+.+...+.++++||.+++...+..-+.+++.+.++++.++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D 88 (284)
T PRK14193 34 GLGTVLVGDDPGSQAYVRGKHRDCAEVGITSIRRDLPADATQEELNAVIDELNAD 88 (284)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 466677776655 455666778889999999999999999999999999988654
No 389
>PRK09230 cytosine deaminase; Provisional
Probab=42.61 E-value=1.8e+02 Score=27.08 Aligned_cols=100 Identities=11% Similarity=0.095 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCchH--HHHHHHHHhhcCc--eEEEEecCCcCc-----hhhhhh--hccCCcE
Q 028883 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCKE--ALSYALSAKERGI--KIIIVGDGVEAH-----LSGVAA--ANSQILV 139 (202)
Q Consensus 71 ~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~--l~~~~~~~~~~g~--~ViIa~AG~aa~-----LpgvvA--~~T~~PV 139 (202)
.+.++++.+..+++|++.++++.-. ..+.+ ....++..+..|+ +++++=+---.. .+-.+. +....+|
T Consensus 194 ~e~l~~~~~~A~~~g~~~~~H~~E~-~~~~~~~~~~~~~~~~~~gl~~~v~~~H~~~l~~~~~~~~~~~~~~La~~gv~v 272 (426)
T PRK09230 194 VESLHKAFALAQKYDRLIDVHCDEI-DDEQSRFVETVAALAHREGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINF 272 (426)
T ss_pred HHHHHHHHHHHHHhCCCcEEEECCC-CCcchHHHHHHHHHHHHhCCCCCEEEEecCchhcCCHHHHHHHHHHHHHcCCeE
Confidence 4678899999999999999998753 22222 2233343444444 444432221111 122222 2357789
Q ss_pred EEecCCCCCC----------Chhh-HHHhhcCCCCCeeeEEecCCh
Q 028883 140 IRVPLLSEDW----------SEDD-VINSIRMPSHVQVASVPRNNA 174 (202)
Q Consensus 140 IgVP~~~~~l----------~G~D-LlS~vqMP~GvpVatV~I~n~ 174 (202)
+.||.+.-.+ .|+. +--+++ .||+|+. +-||.
T Consensus 273 v~cP~sn~~l~~~~~~~p~~~g~~pi~~l~~--aGv~V~l-GTD~~ 315 (426)
T PRK09230 273 VANPLVNIHLQGRFDTYPKRRGITRVKEMLE--AGINVCF-GHDDV 315 (426)
T ss_pred EECcchhhhhcCCCCCCCCCCCCcCHHHHHH--CCCeEEE-ecCCC
Confidence 9999986433 5666 777776 7998854 55654
No 390
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=42.57 E-value=1.4e+02 Score=24.78 Aligned_cols=34 Identities=15% Similarity=0.242 Sum_probs=26.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL 93 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~ 93 (202)
+|+|+.=-.++.+.+....+.|++.|+++++...
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~ 35 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEV 35 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEe
Confidence 4677777778889999999999999987765544
No 391
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=42.56 E-value=1.8e+02 Score=27.26 Aligned_cols=84 Identities=11% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
+..| ++-|+.++-. .++..+.|+++|+++- .+..- .+. .++.. + ..+..+ +++..-...++-.+ -..-.
T Consensus 166 ~~~V-niiG~~~~~d-~~el~~lL~~~Gi~v~-~~lp~-~~~---~d~~~-~-~~~~~~-~~~~~~~~~~A~~L-~~~Gi 234 (427)
T PRK02842 166 HPSL-VLVGSLADVV-EDQLTLEFKKLGIGVV-GFLPA-RRF---TELPA-I-GPGTVV-ALAQPFLSDTARAL-RERGA 234 (427)
T ss_pred CCcE-EEEEeCCcch-HHHHHHHHHHcCCeeE-EEeCC-ccH---HHHhh-c-CcCcEE-EEeCHHHHHHHHHH-HHcCC
Confidence 3456 7778888754 4889999999999873 34433 333 33321 1 123333 33322212234444 44466
Q ss_pred cEEEecCCCCCCChhh
Q 028883 138 LVIRVPLLSEDWSEDD 153 (202)
Q Consensus 138 PVIgVP~~~~~l~G~D 153 (202)
|.+.+|.+-+ +.+.|
T Consensus 235 P~~~~~~P~G-~~~T~ 249 (427)
T PRK02842 235 KVLTAPFPLG-PEGTR 249 (427)
T ss_pred ccccCCCCcC-hHHHH
Confidence 7776665543 45555
No 392
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=42.40 E-value=1.8e+02 Score=25.54 Aligned_cols=46 Identities=20% Similarity=0.356 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEE
Q 028883 71 LPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 71 ~~v~~~a~~~L~~-~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa 119 (202)
.....+..+.+++ ..+|.-+++.. +.+.+.++++.+++.|++.|++
T Consensus 142 ~~~~~eiv~~vr~~~~~pv~vKl~~---~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 142 PELAYEVVKAVKEVVKVPVIVKLTP---NVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCC---CchhHHHHHHHHHHcCCCEEEE
Confidence 3344444443333 24444444431 2234455555555555554443
No 393
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.25 E-value=95 Score=28.24 Aligned_cols=54 Identities=15% Similarity=0.109 Sum_probs=43.5
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+- -+.+-..+.++++|+.++..-.+..-+.+++.+.++++.++
T Consensus 28 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 82 (279)
T PRK14178 28 RLATVIVGDDPASQMYVRMKHRACERVGIGSVGIELPGDATTRTVLERIRRLNED 82 (279)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677777876554 45556688889999999999999999999999999988554
No 394
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=42.19 E-value=73 Score=25.30 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=52.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---CCCchHHHHHHHHH-hhcCceEEEEecCC-cCchhhhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---HQNCKEALSYALSA-KERGIKIIIVGDGV-EAHLSGVAAA 133 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---HRtp~~l~~~~~~~-~~~g~~ViIa~AG~-aa~LpgvvA~ 133 (202)
..+++++|...+ ..+..++.|..+|+.--+.+-.. |-.|+...+.+.+. ++.+.++|+..+.- ...|++.+|+
T Consensus 34 ~v~av~~G~~~~--~~~~l~~~l~~~G~d~v~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~ 111 (164)
T PF01012_consen 34 EVTAVVLGPAEE--AAEALRKALAKYGADKVYHIDDPALAEYDPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAA 111 (164)
T ss_dssp EEEEEEEETCCC--HHHHHHHHHHSTTESEEEEEE-GGGTTC-HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHH
T ss_pred eEEEEEEecchh--hHHHHhhhhhhcCCcEEEEecCccccccCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHH
Confidence 578888884233 34455667778999865666443 34677665544444 44567888777643 3449999999
Q ss_pred ccCCcEEEecC
Q 028883 134 NSQILVIRVPL 144 (202)
Q Consensus 134 ~T~~PVIgVP~ 144 (202)
....|++.=-+
T Consensus 112 ~L~~~~v~~v~ 122 (164)
T PF01012_consen 112 RLGAPLVTDVT 122 (164)
T ss_dssp HHT-EEEEEEE
T ss_pred HhCCCccceEE
Confidence 99999876433
No 395
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.17 E-value=40 Score=30.80 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=32.4
Q ss_pred EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 90 IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 90 v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
.+|...|.....+.++.++ ++++|++.|...-+.+=.--.- .=||-|=+.
T Consensus 184 ATVtichs~T~~L~~~~~~-----ADIvV~AvGkp~~i~~~~vk~G-avVIDvGin 233 (288)
T PRK14171 184 CSVTICHSKTHNLSSITSK-----ADIVVAAIGSPLKLTAEYFNPE-SIVIDVGIN 233 (288)
T ss_pred CEEEEeCCCCCCHHHHHhh-----CCEEEEccCCCCccCHHHcCCC-CEEEEeecc
Confidence 3677778666678777654 7999999998876653221111 127766654
No 396
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.16 E-value=93 Score=28.41 Aligned_cols=54 Identities=19% Similarity=0.189 Sum_probs=43.6
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+- -+.+...+.++++||.+++.-.+.+=+-+++.+.++++.++
T Consensus 33 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d 87 (286)
T PRK14184 33 GLAVILVGEDPASQVYVRNKERACEDAGIVSEAFRLPADTTQEELEDLIAELNAR 87 (286)
T ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677788877654 45555678899999999999999998889999999988654
No 397
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=42.14 E-value=60 Score=24.78 Aligned_cols=59 Identities=10% Similarity=0.138 Sum_probs=38.4
Q ss_pred eEEEEecCC--CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhh
Q 028883 60 IVGIIMESD--LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 60 ~V~IimGS~--SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgvv 131 (202)
+|.+++|+- |=+-+-.+..+.|+++|+++++.+++.--.+. + ..++++|++. .+|+.-+
T Consensus 3 KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~----~-----~~~aDiiv~s----~~l~~~~ 63 (93)
T COG3414 3 KILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKA----L-----TDGADIIVTS----TKLADEF 63 (93)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEeccccc----C-----CCcccEEEEe----hHhhhhc
Confidence 566676654 33445578999999999998887776522222 2 2467999884 4555443
No 398
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=42.09 E-value=1.2e+02 Score=26.82 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC
Q 028883 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa 125 (202)
.++-+..+.+++|++.-.+++.-.|+...+.+++..+...|++=|.+..|-..
T Consensus 46 t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~ 98 (272)
T TIGR00676 46 TVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPP 98 (272)
T ss_pred HHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence 33444444457999999999999999999999999999999987777777543
No 399
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.77 E-value=86 Score=28.66 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=43.6
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+ .-+++...+.++++||.++..-.+..-+.+++.+.++++.++
T Consensus 28 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d 82 (287)
T PRK14181 28 GLAVVLIGNDPASEVYVGMKVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNND 82 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467777776654 445666778889999999999999999999999999988654
No 400
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=41.68 E-value=66 Score=20.07 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCCeEEEEEccCCCch
Q 028883 71 LPVMNDAARTLSDFGVPYEIKILPPHQNCK 100 (202)
Q Consensus 71 ~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~ 100 (202)
-+.++++...|+..|++|+..-........
T Consensus 9 ~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 38 (71)
T cd00570 9 SPRSLRVRLALEEKGLPYELVPVDLGEGEQ 38 (71)
T ss_pred CccHHHHHHHHHHcCCCcEEEEeCCCCCCC
Confidence 368899999999999999987776544433
No 401
>PRK09739 hypothetical protein; Provisional
Probab=41.65 E-value=2e+02 Score=23.69 Aligned_cols=60 Identities=8% Similarity=-0.026 Sum_probs=38.0
Q ss_pred CeEEEEecCCCC----HHHHHHHHHHHHHhCCCeEEEEEccCC---------------------CchHHHHHHHHHhhcC
Q 028883 59 PIVGIIMESDLD----LPVMNDAARTLSDFGVPYEIKILPPHQ---------------------NCKEALSYALSAKERG 113 (202)
Q Consensus 59 ~~V~IimGS~SD----~~v~~~a~~~L~~~gi~~ev~V~SaHR---------------------tp~~l~~~~~~~~~~g 113 (202)
.+|.||.||... ...++...+.|++-|. ++.+...++ .++.+.++.++...
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~--~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 79 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGH--QVEELDLYRSGFDPVLTPEDEPDWKNPDKRYSPEVHQLYSELLE-- 79 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCC--EEEEEEhhhhCCCCCCCHHHhhhhcccCCCCCHHHHHHHHHHHh--
Confidence 479999999865 4456777777777664 444443322 24566777777655
Q ss_pred ceEEEEecC
Q 028883 114 IKIIIVGDG 122 (202)
Q Consensus 114 ~~ViIa~AG 122 (202)
++.||.+.=
T Consensus 80 AD~iV~~~P 88 (199)
T PRK09739 80 HDALVFVFP 88 (199)
T ss_pred CCEEEEECc
Confidence 666666543
No 402
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=41.60 E-value=80 Score=24.61 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=31.0
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccC
Q 028883 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH 96 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH 96 (202)
.+.+.||+-|+.|..+-+...++++.++=...+-+++.+
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALGPDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcCCCCEEEEEECC
Confidence 468999999999998888888888888743566666665
No 403
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=41.54 E-value=67 Score=23.76 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc--CceEEEEecCCcCch
Q 028883 75 NDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEAHL 127 (202)
Q Consensus 75 ~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~--g~~ViIa~AG~aa~L 127 (202)
.++.++|++.|+++++.=++. .++... ++++||+.+-.+..+
T Consensus 5 mkIk~~L~e~Gi~~~ve~~di-----------ss~~~~~~~aDiiVtt~~l~~~~ 48 (85)
T PRK10222 5 MKVDQFLTQSNIDHTVNSCAV-----------GEYKSELSGADIIIASTHIAGEI 48 (85)
T ss_pred HHHHHHHHHcCCCeEEEEeeh-----------hhcccCCCCCCEEEECccchhhh
Confidence 367899999999988654432 111222 468999865554444
No 404
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=41.41 E-value=1.9e+02 Score=23.34 Aligned_cols=79 Identities=13% Similarity=0.089 Sum_probs=51.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHH-hhcCceEEEEecCC-cCchhhhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSA-KERGIKIIIVGDGV-EAHLSGVAAA 133 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~-~~~g~~ViIa~AG~-aa~LpgvvA~ 133 (202)
..+++++|...+. .+.+.+..+|..--+.+-. .+-.|+...+.+.++ ++.+.++|++.+-- ...|++.+|+
T Consensus 37 ~v~~v~~G~~~~~----~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~ 112 (181)
T cd01985 37 EVTALVIGPPAAE----VALREALAMGADKVLLVEDPALAGYDPEATAKALAALIKKEKPDLILAGATSIGKQLAPRVAA 112 (181)
T ss_pred eEEEEEECChHHH----HHHHHHHHhCCCEEEEEecCcccCCChHHHHHHHHHHHHHhCCCEEEECCcccccCHHHHHHH
Confidence 3788888876542 2223345689874444432 455677766655554 44467777766655 5589999999
Q ss_pred ccCCcEEE
Q 028883 134 NSQILVIR 141 (202)
Q Consensus 134 ~T~~PVIg 141 (202)
....|++.
T Consensus 113 ~L~~~~vs 120 (181)
T cd01985 113 LLGVPQIS 120 (181)
T ss_pred HhCCCcce
Confidence 98888764
No 405
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=41.32 E-value=39 Score=31.76 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+.+.+.++|+++|++.+ .+|...|.....+.++.++ +||+|+++|...-+
T Consensus 197 Tp~avi~LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T~nl~~~~~~-----ADIvIsAvGkp~~v 271 (345)
T PLN02897 197 TPKGCVELLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFTKDPEQITRK-----ADIVIAAAGIPNLV 271 (345)
T ss_pred CHHHHHHHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCCCCHHHHHhh-----CCEEEEccCCcCcc
Q ss_pred hh
Q 028883 128 SG 129 (202)
Q Consensus 128 pg 129 (202)
.+
T Consensus 272 ~~ 273 (345)
T PLN02897 272 RG 273 (345)
T ss_pred CH
No 406
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=41.30 E-value=59 Score=22.30 Aligned_cols=28 Identities=32% Similarity=0.600 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCc
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNC 99 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp 99 (202)
|.+.++.-.|+++|++|++.+.-..+.+
T Consensus 3 P~a~Rv~i~l~~~gl~~~~~~v~~~~~~ 30 (70)
T PF13409_consen 3 PFAHRVRIALEEKGLPYEIKVVPLIPKG 30 (70)
T ss_dssp HHHHHHHHHHHHHTGTCEEEEEETTTTB
T ss_pred hHhHHHHHHHHHhCCCCEEEEEeeecCc
Confidence 6788999999999999999888543333
No 407
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.24 E-value=37 Score=30.97 Aligned_cols=49 Identities=16% Similarity=0.175 Sum_probs=32.7
Q ss_pred EEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCC
Q 028883 91 KILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145 (202)
Q Consensus 91 ~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~ 145 (202)
.|...|+..+.+.++.++ ++++|++.|...-+.+=.-- -..=||-|=+.
T Consensus 185 tVtv~hs~T~~l~~~~~~-----ADIvi~avG~p~~v~~~~vk-~gavVIDvGin 233 (285)
T PRK10792 185 TVTVCHRFTKNLRHHVRN-----ADLLVVAVGKPGFIPGEWIK-PGAIVIDVGIN 233 (285)
T ss_pred eEEEEECCCCCHHHHHhh-----CCEEEEcCCCcccccHHHcC-CCcEEEEcccc
Confidence 667779888888887753 79999999998866542111 12226666544
No 408
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=41.16 E-value=1.8e+02 Score=25.75 Aligned_cols=49 Identities=6% Similarity=0.055 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCc-hHHHHHHHHHhhcCceEEEEe
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNC-KEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp-~~l~~~~~~~~~~g~~ViIa~ 120 (202)
+.+.++.+..++.|+...+.+.-+.|+| +.+.++++.+.+-|++.|.-+
T Consensus 112 ~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (262)
T cd07948 112 ESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIA 161 (262)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 3344555666678999899998899997 888889999888788754433
No 409
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=41.12 E-value=2.4e+02 Score=25.41 Aligned_cols=85 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred HHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC--------------chhh------------hhhhcc
Q 028883 82 SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA--------------HLSG------------VAAANS 135 (202)
Q Consensus 82 ~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa--------------~Lpg------------vvA~~T 135 (202)
+...+|.-+++.. ....+.++++.+++.|++-|++....-. .|+| -+...+
T Consensus 162 ~~~~iPV~vKl~p---~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~ 238 (334)
T PRK07565 162 SAVSIPVAVKLSP---YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV 238 (334)
T ss_pred hccCCcEEEEeCC---CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc
Confidence 3457787777643 2235667777777888886666544211 0111 012345
Q ss_pred CCcEEEecCCCCCCChhhHHHhhcC-CCCCeeeEEecC
Q 028883 136 QILVIRVPLLSEDWSEDDVINSIRM-PSHVQVASVPRN 172 (202)
Q Consensus 136 ~~PVIgVP~~~~~l~G~DLlS~vqM-P~GvpVatV~I~ 172 (202)
..||||+ ++-.++.|..-++.. ..+|-+++-.+.
T Consensus 239 ~ipIig~---GGI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 239 GADLAAT---TGVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred CCCEEEE---CCCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 6888875 555677773333333 555555544333
No 410
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=41.12 E-value=1.5e+02 Score=27.63 Aligned_cols=94 Identities=15% Similarity=0.023 Sum_probs=54.0
Q ss_pred CCCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEE-----ccCC---------CchHHHHHHHHHhhcCceEEEEec
Q 028883 56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKIL-----PPHQ---------NCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 56 ~~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~-----SaHR---------tp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
.++.+|-||-|+..+-.-+++..+.|++||++.-.... ..|= .-..++++.+ +.+ +.+-|+..
T Consensus 153 ~~~~~VNlig~~~~~~~d~~el~~lL~~~Gl~v~~~~~~s~~~d~~~~~~~~~~~~gg~~~e~i~~-~~~--A~lniv~~ 229 (428)
T cd01965 153 KKNGKVNLLPGFPLTPGDVREIKRILEAFGLEPIILPDLSDSLDGHLTDGYSPLTKGGTTLEEIRD-AGN--AKATIALG 229 (428)
T ss_pred CCCCeEEEECCCCCCccCHHHHHHHHHHcCCCEEEecCcccccCCCCCCCccccCCCCCcHHHHHH-hcc--CcEEEEEC
Confidence 45578999988776555679999999999997654331 1121 1123444432 222 34444443
Q ss_pred C-CcCchhhhhhhccCCcEEEecCCCCCCChhh
Q 028883 122 G-VEAHLSGVAAANSQILVIRVPLLSEDWSEDD 153 (202)
Q Consensus 122 G-~aa~LpgvvA~~T~~PVIgVP~~~~~l~G~D 153 (202)
- -...++-.+.-....|.+.+|..-+ +.+.|
T Consensus 230 ~~~~~~~a~~L~e~~GiP~~~~~~p~G-~~~t~ 261 (428)
T cd01965 230 EYSGRKAAKALEEKFGVPYILFPTPIG-LKATD 261 (428)
T ss_pred hhhhHHHHHHHHHHHCCCeeecCCCcC-hHHHH
Confidence 2 2224455566678899998885332 34444
No 411
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.11 E-value=93 Score=28.42 Aligned_cols=61 Identities=15% Similarity=0.208 Sum_probs=46.9
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcC-ceEEEE
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g-~~ViIa 119 (202)
.++.|..|.+.+- -+.+...+.++++|+.+++...+..-+.+++.+.++++.++. .+=||.
T Consensus 31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlv 93 (287)
T PRK14173 31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILV 93 (287)
T ss_pred cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 5777888877654 556667788899999999999999989999999999886542 344443
No 412
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=41.06 E-value=4.4e+02 Score=27.51 Aligned_cols=112 Identities=12% Similarity=0.070 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC-chhhhhhhccCCcEEEecCCCCCCCh
Q 028883 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA-HLSGVAAANSQILVIRVPLLSEDWSE 151 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa-~LpgvvA~~T~~PVIgVP~~~~~l~G 151 (202)
..++..+..+++|+.-.++..+.+-......++...+. ...+||+.-+=-++ +|.-+=|..+-+|||+- +.+|
T Consensus 604 ~i~~L~~la~~~gL~g~V~flG~~~~~~~~~elyr~iA-d~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT-----~~GG 677 (784)
T TIGR02470 604 EIEKMHNLIDQYQLHGQIRWIGAQLNRVRNGELYRYIA-DTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT-----RFGG 677 (784)
T ss_pred HHHHHHHHHHHhCCCCeEEEccCcCCcccHHHHHHHhh-ccCcEEEECCcccCCCHHHHHHHHcCCCEEEc-----CCCC
Confidence 45566666778888877887776544444545443221 22467777665544 56666666788888872 2334
Q ss_pred hhHHHhhc-CCCCCeeeEEecCChhhHHHHHHHHHc-----cCCHHHHHHHHH
Q 028883 152 DDVINSIR-MPSHVQVASVPRNNAKNAALYAVKVLG-----IADEDLLERIRK 198 (202)
Q Consensus 152 ~DLlS~vq-MP~GvpVatV~I~n~~NAAl~Aa~IL~-----~~d~~l~~kl~~ 198 (202)
.. -+++ --.|. .| ++.+..-+|..|.. +.|++.|+++..
T Consensus 678 ~~--EiV~dg~tGf---LV---dp~D~eaLA~aL~~ll~kll~dp~~~~~ms~ 722 (784)
T TIGR02470 678 PL--EIIQDGVSGF---HI---DPYHGEEAAEKIVDFFEKCDEDPSYWQKISQ 722 (784)
T ss_pred HH--HHhcCCCcEE---Ee---CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 33 1121 11222 12 33333444444443 368999988754
No 413
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=40.95 E-value=98 Score=28.22 Aligned_cols=54 Identities=11% Similarity=0.125 Sum_probs=42.7
Q ss_pred CeEEEEecCCCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+-. +.+...+.++++||.+++.-.+..-+.+++.+.++++.++
T Consensus 32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d 86 (282)
T PRK14182 32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPATTTQAELLALIARLNAD 86 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46777777665544 4555678889999999999999888999999999888654
No 414
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=40.80 E-value=1.9e+02 Score=23.17 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=55.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE---------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE---------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~e---------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
.+|-|+-.+.| ...++....-|..+|.++. +-+.|-.+....+.+.++.++++|+++|....-.
T Consensus 31 ~~I~i~G~G~S-~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~ 109 (179)
T TIGR03127 31 KRIFVAGAGRS-GLVGKAFAMRLMHLGFNVYVVGETTTPSIKKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNP 109 (179)
T ss_pred CEEEEEecCHH-HHHHHHHHHHHHhCCCeEEEeCCcccCCCCCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 35555444444 6788899888888887642 4667777888889999999999998876555545
Q ss_pred cCchhhhhhhccCCcEEEecCCC
Q 028883 124 EAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 124 aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
.+-|.. +.+. ++-+|...
T Consensus 110 ~s~la~----~ad~-~l~~~~~~ 127 (179)
T TIGR03127 110 ESTLGK----LADV-VVEIPAAT 127 (179)
T ss_pred CCchHH----hCCE-EEEeCCcc
Confidence 555544 3333 45566544
No 415
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=40.60 E-value=55 Score=24.71 Aligned_cols=31 Identities=13% Similarity=0.345 Sum_probs=26.1
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEE
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIK 91 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~ 91 (202)
-.++.+.|.|-.+.+.....+++.||||..-
T Consensus 31 ~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V 61 (84)
T PRK13600 31 TSLIIAEDVEVYLMTRVLSQINQKNIPVSFF 61 (84)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3567778888889999999999999998753
No 416
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=40.29 E-value=1.6e+02 Score=24.64 Aligned_cols=26 Identities=19% Similarity=0.143 Sum_probs=17.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi 86 (202)
.++.+|+|+++. +...+++.|-+-|.
T Consensus 10 ~k~vlVtGas~g--iG~~ia~~l~~~G~ 35 (278)
T PRK08277 10 GKVAVITGGGGV--LGGAMAKELARAGA 35 (278)
T ss_pred CCEEEEeCCCch--HHHHHHHHHHHCCC
Confidence 467888888874 45666666666665
No 417
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=40.21 E-value=1.6e+02 Score=22.19 Aligned_cols=61 Identities=13% Similarity=0.205 Sum_probs=34.7
Q ss_pred HHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc---hhhh---hhhccCCcEEEecCCC
Q 028883 82 SDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH---LSGV---AAANSQILVIRVPLLS 146 (202)
Q Consensus 82 ~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~---Lpgv---vA~~T~~PVIgVP~~~ 146 (202)
+..|++.+..+. .+-.| .+++++.+++.+++.||.+.-+ .. |.++ |.-++++||.-||...
T Consensus 75 ~~~~~~~~~~~~-~~G~p--~~~I~~~a~~~~~DLIV~Gs~~-~~~~~lgSva~~v~~~a~~pVLvv~~~~ 141 (144)
T PRK15118 75 TNAGYPITETLS-GSGDL--GQVLVDAIKKYDMDLVVCGHHQ-DFWSKLMSSARQLINTVHVDMLIVPLRD 141 (144)
T ss_pred HhCCCCceEEEE-EecCH--HHHHHHHHHHhCCCEEEEeCcc-cHHHHHHHHHHHHHhhCCCCEEEecCCc
Confidence 446776532222 12233 4456666667788888876653 22 2221 2336889999999753
No 418
>PRK07478 short chain dehydrogenase; Provisional
Probab=40.16 E-value=1.6e+02 Score=24.25 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=12.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhC
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFG 85 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~g 85 (202)
++.+|+|+++.+ ....++.|-+-|
T Consensus 7 k~~lItGas~gi--G~~ia~~l~~~G 30 (254)
T PRK07478 7 KVAIITGASSGI--GRAAAKLFAREG 30 (254)
T ss_pred CEEEEeCCCChH--HHHHHHHHHHCC
Confidence 566777776643 333444444444
No 419
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=40.05 E-value=1.4e+02 Score=26.35 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=41.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHH-hCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSD-FGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~-~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
-+|.++ |++ -.+++++++.|++ +|+.. ++..+-.-.|++-.++++.....+.++++++=|.
T Consensus 106 ~~v~ll-G~~--~~v~~~a~~~l~~~y~l~i-~g~~~Gyf~~~e~~~i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 106 TPVFLV-GGK--PEVLAQTEAKLRTQWNVNI-VGSQDGYFTPEQRQALFERIHASGAKIVTVAMGS 167 (243)
T ss_pred CeEEEE-CCC--HHHHHHHHHHHHHHhCCEE-EEEeCCCCCHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 356665 654 4589999998865 66543 2322333356777778888888899999987665
No 420
>PRK10426 alpha-glucosidase; Provisional
Probab=39.92 E-value=1.2e+02 Score=30.46 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=40.6
Q ss_pred EEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc---------------------CCCchHHHHHHHHHhhcCceEEEEe
Q 028883 62 GIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP---------------------HQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 62 ~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa---------------------HRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
+...|-.+....+++..+.+++.|||+++-.+-- .|-|+ ..+++++..+.|++++.-+
T Consensus 211 G~~~g~~~~~~~v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i 289 (635)
T PRK10426 211 GVTLGIQGGTEVVQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYI 289 (635)
T ss_pred CccccccCCHHHHHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEE
Confidence 4555655556678888899999999999754421 12232 5678888889999866554
No 421
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.91 E-value=96 Score=28.27 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=46.2
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEE
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa 119 (202)
.++.|..|.+.+ .-+.+...+.++++||.+++.-.+..-+.+++.+.++++.++ ..+=||.
T Consensus 32 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIiv 94 (282)
T PRK14166 32 CLAVILVGDNPASQTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILV 94 (282)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 467777776654 455666778889999999999999999999999999988654 2344443
No 422
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=39.90 E-value=59 Score=30.44 Aligned_cols=70 Identities=13% Similarity=0.000 Sum_probs=49.6
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeE-EEEEccCCCchH-HHHHHHHHhhcCceEEEEecCCcCchhhhhhhccC
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYE-IKILPPHQNCKE-ALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQ 136 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~e-v~V~SaHRtp~~-l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~ 136 (202)
.+.|.+||++ ..+++|.+.|++-|+.+. +++...+=.|.+ +.++++ +++.+|++=-..+-|...+.+.+.
T Consensus 277 ~~IV~~GSt~--~~~keAv~~lr~~G~kvg~l~~~~~~PfP~~~i~~~l~-----~~k~viVvE~n~Gql~~~v~~~~~ 348 (375)
T PRK09627 277 ILIIAYGSVS--LSAKEAIKRLREEGIKVGLFRPITLWPSPAKKLKEIGD-----KFEKILVIELNMGQYLEEIERVMQ 348 (375)
T ss_pred EEEEEeCCCH--HHHHHHHHHHHhcCCeEEEEEeCeEECCCHHHHHHHHh-----cCCEEEEEcCChHHHHHHHHHHhC
Confidence 5667777775 789999999999888754 466667778875 666664 366666665555777777776653
No 423
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=39.88 E-value=1.5e+02 Score=27.08 Aligned_cols=57 Identities=30% Similarity=0.404 Sum_probs=42.7
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCce-EEEE
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK-IIIV 119 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~-ViIa 119 (202)
-.|-||.-+.||.++..+|..-+ .+|-.|.++|.|.--|.. .++++.+.. |++ |+||
T Consensus 7 VDVRIiVEGAsDvE~iSkalQr~-aLG~eYnITisSIiPTT~--~eIA~raae-GADlvlIA 64 (290)
T COG4026 7 VDVRIIVEGASDVEVISKALQRL-ALGSEYNITISSIIPTTN--VEIAKRAAE-GADLVLIA 64 (290)
T ss_pred ceEEEEeeccchHHHHHHHHHHh-hhcccceeEEEeeccCch--HHHHHHhhc-cCCEEEEe
Confidence 46999999999999998887664 488899999999865544 456665543 566 4444
No 424
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=39.82 E-value=2.2e+02 Score=23.60 Aligned_cols=59 Identities=14% Similarity=0.168 Sum_probs=37.0
Q ss_pred eEEEEecC-CCCHHHHH----HHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 60 IVGIIMES-DLDLPVMN----DAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 60 ~V~IimGS-~SD~~v~~----~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
+|++|... +.+-|+.. .+.+.++++|+ ++.+.... .++...++++.+..++.+-||...
T Consensus 1 ~Igvi~~~~~~~~~f~~~l~~gi~~~~~~~gy--~~~~~~~~-~~~~~~~~~~~l~~~~vdgiii~~ 64 (260)
T cd06304 1 KVALVYDGGGGDKSFNQSAYEGLEKAEKELGV--EVKYVESV-EDADYEPNLRQLAAQGYDLIFGVG 64 (260)
T ss_pred CEEEEecCCCCcchHHHHHHHHHHHHHHhcCc--eEEEEecC-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 46767653 23445544 55566677776 45444433 677777888888888888666653
No 425
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=39.67 E-value=1.2e+02 Score=26.39 Aligned_cols=53 Identities=26% Similarity=0.192 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a 124 (202)
....-+..++++.|++.-.+++.-.|+...+.+.+..+...|++=|.++.|-.
T Consensus 45 ~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~ 97 (274)
T cd00537 45 MTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDP 97 (274)
T ss_pred hHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCC
Confidence 45566677777889999999999999999999999999999998777776643
No 426
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=39.61 E-value=1.2e+02 Score=25.47 Aligned_cols=119 Identities=13% Similarity=0.077 Sum_probs=60.2
Q ss_pred CCeEEEEecCCCCHH---HHHHHHHHHHHhCCCeEEE-EEccCCCchHHHHHHHHHhhc--CceEEEEecCCcCchhhhh
Q 028883 58 APIVGIIMESDLDLP---VMNDAARTLSDFGVPYEIK-ILPPHQNCKEALSYALSAKER--GIKIIIVGDGVEAHLSGVA 131 (202)
Q Consensus 58 ~~~V~IimGS~SD~~---v~~~a~~~L~~~gi~~ev~-V~SaHRtp~~l~~~~~~~~~~--g~~ViIa~AG~aa~Lpgvv 131 (202)
..+|++++|...+.. -.+.-.+.+++.|++++.. +.+..-.++...+.++++..+ ..+.|++..+.-+. |++
T Consensus 152 ~~~I~~l~~~~~~~~~~~R~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~~d~~a~--gv~ 229 (309)
T PRK11041 152 HKRIACIAGPEEMPLCHYRLQGYVQALRRCGITVDPQYIARGDFTFEAGAKALKQLLDLPQPPTAVFCHSDVMAL--GAL 229 (309)
T ss_pred CceEEEEeCCccccchHHHHHHHHHHHHHcCCCCCHHHeEeCCCCHHHHHHHHHHHHcCCCCCCEEEEcCcHHHH--HHH
Confidence 368999987644322 2334467788889876432 333334555555665555333 25788875443332 566
Q ss_pred hhccCCcEEEecCCCCCCChhh---HHHhhcCCCCCeeeEEecCChhhHHHHHHHHH
Q 028883 132 AANSQILVIRVPLLSEDWSEDD---VINSIRMPSHVQVASVPRNNAKNAALYAVKVL 185 (202)
Q Consensus 132 A~~T~~PVIgVP~~~~~l~G~D---LlS~vqMP~GvpVatV~I~n~~NAAl~Aa~IL 185 (202)
.++-..- +.+|-.- .+-|+| +.+++. | +++||.. +..--|..|+++|
T Consensus 230 ~al~~~g-~~ip~di-~vvg~D~~~~~~~~~-~---~~~ti~~-~~~~~g~~av~~l 279 (309)
T PRK11041 230 SQAKRMG-LRVPQDL-SIIGFDDIDLAQYCD-P---PLTTVAQ-PRYEIGREAMLLL 279 (309)
T ss_pred HHHHHcC-CCCCcce-EEEEeCCchhhhhcC-C---CceEEec-CHHHHHHHHHHHH
Confidence 6654432 1233221 122333 233322 2 4577744 4445555565554
No 427
>PRK06940 short chain dehydrogenase; Provisional
Probab=39.59 E-value=1.5e+02 Score=25.27 Aligned_cols=11 Identities=18% Similarity=0.347 Sum_probs=7.6
Q ss_pred ceEEEEecCCc
Q 028883 114 IKIIIVGDGVE 124 (202)
Q Consensus 114 ~~ViIa~AG~a 124 (202)
++++|-.||..
T Consensus 77 id~li~nAG~~ 87 (275)
T PRK06940 77 VTGLVHTAGVS 87 (275)
T ss_pred CCEEEECCCcC
Confidence 57777777753
No 428
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=39.52 E-value=2.2e+02 Score=24.20 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=40.0
Q ss_pred CCeEEEE-ecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCC----CchHHHHHHHHHhhcCceEEEEecCCcCchhh
Q 028883 58 APIVGII-MESDLDLPVMNDAARTLSDFGVPYEIKILPPHQ----NCKEALSYALSAKERGIKIIIVGDGVEAHLSG 129 (202)
Q Consensus 58 ~~~V~Ii-mGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHR----tp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg 129 (202)
.++|++| ++|.......++..+.++++|+. ++++.-.++ ..+.+.+.+. .+++|+...|....|-.
T Consensus 29 ~~~i~~iptA~~~~~~~~~~~~~~~~~lG~~-~v~~~~~~~~~~a~~~~~~~~l~-----~ad~I~~~GG~~~~~~~ 99 (217)
T cd03145 29 GARIVVIPAASEEPAEVGEEYRDVFERLGAR-EVEVLVIDSREAANDPEVVARLR-----DADGIFFTGGDQLRITS 99 (217)
T ss_pred CCcEEEEeCCCcChhHHHHHHHHHHHHcCCc-eeEEeccCChHHcCCHHHHHHHH-----hCCEEEEeCCcHHHHHH
Confidence 3566665 77766677788899999999976 444444442 2223333332 26777777675544444
No 429
>cd06332 PBP1_aromatic_compounds_like Type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes. This group includes the type I periplasmic binding proteins of active transport systems that are predicted to be involved in transport of aromatic compounds such as 2-nitrobenzoic acid and alkylbenzenes; their substrate specificities are not well characterized, however. Members also exhibit close similarity to active transport systems for short chain amides and/or urea found in bacteria and archaea.
Probab=39.42 E-value=2.4e+02 Score=23.89 Aligned_cols=70 Identities=13% Similarity=0.114 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhC-----CCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEEecCCcC--chhhhhhhccCCcEEEe
Q 028883 72 PVMNDAARTLSDFG-----VPYEIKILPPHQNCKEALSYALSAKER-GIKIIIVGDGVEA--HLSGVAAANSQILVIRV 142 (202)
Q Consensus 72 ~v~~~a~~~L~~~g-----i~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa~AG~aa--~LpgvvA~~T~~PVIgV 142 (202)
+..+.+...+++.| .++++.+.--...|+...+.++++.++ ++++||...+.+. .+...+ .....|+|.+
T Consensus 18 ~~~~g~~~a~~~~~~~i~G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~s~~~~~~~~~~-~~~~ip~v~~ 95 (333)
T cd06332 18 DIRDGFELALKQLGGKLGGRPVEVVVEDDELKPDVAVQAARKLIEQDKVDVVVGPVFSNVALAVVPSL-TESGTFLISP 95 (333)
T ss_pred HHHHHHHHHHHHhCCCcCCeEEEEEEecCCCCHHHHHHHHHHHHHHcCCcEEEcCCccHHHHHHHHHH-hhcCCeEEec
Confidence 45556666667664 357888877777898888888887655 7888876433322 222233 3457788875
No 430
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.32 E-value=1.1e+02 Score=28.01 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=46.5
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcC-ceEEEE
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g-~~ViIa 119 (202)
.++.|..|.+. +.-+.+...+.++++||.++..-.+..-+.+++.+.+++..++. .+=||.
T Consensus 34 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlv 96 (285)
T PRK14189 34 GLAVILVGDNPASQVYVRNKVKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILV 96 (285)
T ss_pred eEEEEEeCCCchHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEE
Confidence 46667777654 45566777889999999999999999999999999999886542 343544
No 431
>PRK14453 chloramphenicol/florfenicol resistance protein; Provisional
Probab=39.22 E-value=1.4e+02 Score=27.71 Aligned_cols=64 Identities=11% Similarity=0.106 Sum_probs=51.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHh---CCCeEEEEEccCCCch-----------HHHHHHHHHhhcCceEEEEecCC
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDF---GVPYEIKILPPHQNCK-----------EALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~---gi~~ev~V~SaHRtp~-----------~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
...+|-|=..|.+.+++.++.++.+ |..+.+.++-.|..+. ++.+|.+.+++.|+.|.|--..+
T Consensus 252 ry~LI~GvNDs~e~a~~L~~~lk~l~~~~~~~~VnLIPyn~~~~~~~~~~~ps~e~v~~f~~~L~~~Gi~vtiR~~~G 329 (347)
T PRK14453 252 AYIMLEGVNDSKEHAEAVVGLLRNRGSWEHLYHVNLIPYNSTDKTPFKFQSSSAGQIKQFCSTLKSAGISVTVRTQFG 329 (347)
T ss_pred EEEeECCCCCCHHHHHHHHHHHhhccccCCcceEEEecCCCCCCCCccCCCCCHHHHHHHHHHHHHCCCcEEEeCCCC
Confidence 3577888888889999999999988 4578899999998754 37888888888888887754444
No 432
>PRK10927 essential cell division protein FtsN; Provisional
Probab=39.18 E-value=2.7e+02 Score=26.17 Aligned_cols=66 Identities=17% Similarity=0.011 Sum_probs=53.6
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEE--------EEEccCCCchHHHHHHHHHhhcCc-eEEEEecCC
Q 028883 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEI--------KILPPHQNCKEALSYALSAKERGI-KIIIVGDGV 123 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev--------~V~SaHRtp~~l~~~~~~~~~~g~-~ViIa~AG~ 123 (202)
...-.|=.||.++..-++....-|...|++..+ -+++..-+-+.++.....+...|+ .+|+..+|+
T Consensus 245 ~~~~~VQvGSF~n~~nAE~LrAkLa~~G~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~aGis~ci~~a~gG 319 (319)
T PRK10927 245 ERRWMVQCGSFRGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRLAAGG 319 (319)
T ss_pred CCcEEEEeCccCCHHHHHHHHHHHHHcCCeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCceeeccCCC
Confidence 367899999999999999999999999987443 234566688889999888888887 577776664
No 433
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=39.10 E-value=94 Score=21.52 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEc
Q 028883 72 PVMNDAARTLSDFGVPYEIKILP 94 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~S 94 (202)
+.+.++...|++.|++|++.-+.
T Consensus 11 p~~~kv~~~L~~~gi~y~~~~v~ 33 (77)
T cd03041 11 PFCRLVREVLTELELDVILYPCP 33 (77)
T ss_pred chHHHHHHHHHHcCCcEEEEECC
Confidence 78999999999999999986544
No 434
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=38.99 E-value=2.1e+02 Score=25.54 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=52.3
Q ss_pred CCHHHHHHHHHHHHH-hCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCc--------Cchhh--hhhhccC
Q 028883 69 LDLPVMNDAARTLSD-FGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVE--------AHLSG--VAAANSQ 136 (202)
Q Consensus 69 SD~~v~~~a~~~L~~-~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a--------a~Lpg--vvA~~T~ 136 (202)
.|...+.++.+.+.+ .++|+.+++- +.........++++.+++.|++.|..- |+. +.+.- -+...++
T Consensus 114 ~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh-~r~~~~~~~~~~~~~~i~~i~~~~~ 192 (319)
T TIGR00737 114 RDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLH-GRTRAQGYSGEANWDIIARVKQAVR 192 (319)
T ss_pred CCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEE-cccccccCCCchhHHHHHHHHHcCC
Confidence 477888888877754 7899888874 222233456788888888888766543 321 11211 2334567
Q ss_pred CcEEEecCCCCCCChhhHHHhhcC
Q 028883 137 ILVIRVPLLSEDWSEDDVINSIRM 160 (202)
Q Consensus 137 ~PVIgVP~~~~~l~G~DLlS~vqM 160 (202)
.|||++ ++-.+.-|...+++.
T Consensus 193 ipvi~n---GgI~~~~da~~~l~~ 213 (319)
T TIGR00737 193 IPVIGN---GDIFSPEDAKAMLET 213 (319)
T ss_pred CcEEEe---CCCCCHHHHHHHHHh
Confidence 888862 332333446666643
No 435
>cd07304 Chorismate_synthase Chorismase synthase, the enzyme catalyzing the final step of the shikimate pathway. Chorismate synthase (CS; 5-enolpyruvylshikimate-3-phosphate phospholyase; 1-carboxyvinyl-3-phosphoshikimate phosphate-lyase; E.C. 4.2.3.5) catalyzes the seventh and final step in the shikimate pathway: the conversion of 5- enolpyruvylshikimate-3-phosphate (EPSP) to chorismate, a precursor for the biosynthesis of aromatic compounds. This process has an absolute requirement for reduced FMN as a co-factor which is thought to facilitate cleavage of C-O bonds by transiently donating an electron to the substrate, having no overall change its redox state. Depending on the capacity of these enzymes to regenerate the reduced form of FMN, chorismate synthases are divided into two classes: Enzymes, mostly from plants and eubacteria, that sequester CS from the cellular environment, are monofunctiona,l while those that can generate reduced FMN at the expense of NADPH, such as found in fun
Probab=38.92 E-value=83 Score=29.61 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHHhCCCeEEEEEccCC-----------------------C-----chHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 76 DAARTLSDFGVPYEIKILPPHQ-----------------------N-----CKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 76 ~a~~~L~~~gi~~ev~V~SaHR-----------------------t-----p~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
-|++.|+++||..--.|.+... . .+++.++++++.++|- .|
T Consensus 132 iAk~~L~~~gI~i~s~v~~IG~i~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~gD-----------Sl 200 (344)
T cd07304 132 VAKKLLKEFGIEVVAHVKSIGGIEDEPFDLDEEELLEEAEESPVRCPDPEAEEKMKELIDEAKKEGD-----------SV 200 (344)
T ss_pred HHHHHHHHCCcEEEEEEEEECCEecCcccccchhhHHHHhcCCCCCCCHHHHHHHHHHHHHHHHcCC-----------CC
Confidence 4678899999985544444432 1 2446666777666542 22
Q ss_pred hhhhhhccCCcEEEecCCCC--CCChhh-HHHhhcCCCCCe-eeEEecCChhhHHH
Q 028883 128 SGVAAANSQILVIRVPLLSE--DWSEDD-VINSIRMPSHVQ-VASVPRNNAKNAAL 179 (202)
Q Consensus 128 pgvvA~~T~~PVIgVP~~~~--~l~G~D-LlS~vqMP~Gvp-VatV~I~n~~NAAl 179 (202)
+| -...=|.|||+--+ -++.+| .|+..-| ++| |=-|-|+.++++|.
T Consensus 201 GG----~ve~~~~gvP~GLG~p~f~klda~la~a~~--sIpAvKgve~G~Gf~~a~ 250 (344)
T cd07304 201 GG----VVEVVATGVPAGLGSPVFDKLDARLAQALM--SIPAVKGVEIGSGFEAAR 250 (344)
T ss_pred ce----EEEEEEECCCCCCCccccccchHHHHHHhc--CcCceeEEEECcchhhhh
Confidence 22 22333566776422 257888 7777766 334 56677788887764
No 436
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.81 E-value=1.2e+02 Score=27.81 Aligned_cols=54 Identities=13% Similarity=0.151 Sum_probs=42.7
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+.+- -+.+...+.++++||.++..-.+..-+.+++.+.++++.++
T Consensus 34 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d 88 (294)
T PRK14187 34 CLIVILVGDDPASQLYVRNKQRKAEMLGLRSETILLPSTISESSLIEKINELNND 88 (294)
T ss_pred eEEEEEeCCChhHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4677777766554 45556688889999999999999988889999998888654
No 437
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.80 E-value=98 Score=28.24 Aligned_cols=61 Identities=16% Similarity=0.141 Sum_probs=46.5
Q ss_pred CeEEEEecCCCC-HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc-CceEEEE
Q 028883 59 PIVGIIMESDLD-LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~SD-~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~-g~~ViIa 119 (202)
.++.|..|.+.+ .-+.+...+.++++||.++..-....-+.+++.+.++++.++ ..+=||.
T Consensus 35 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlv 97 (285)
T PRK10792 35 GLAVVLVGSDPASQVYVASKRKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILV 97 (285)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 467777776654 455667788899999999999999999999999999988654 2343443
No 438
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=38.73 E-value=1.7e+02 Score=22.13 Aligned_cols=66 Identities=24% Similarity=0.235 Sum_probs=41.6
Q ss_pred EEecCCCCHHHHHHHHHHHHHh-CCCeE--------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 63 IIMESDLDLPVMNDAARTLSDF-GVPYE--------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 63 IimGS~SD~~v~~~a~~~L~~~-gi~~e--------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
++.|.-+-...+..+...|.++ |+++. +-+.|-....+++.+.++.++++|+++|....
T Consensus 3 ~i~G~G~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 3 FFVGCGGSLADMYPAKYFLKKESKLPVFVYNAAEFLHTGPKRLTEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred EEEEecHHHHHHhHHHHHHHHhcCCceEEEcHHHHhhcCcccCCCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEEC
Confidence 3455556677777777777776 56532 34566666677777777777777776555444
Q ss_pred CCcCchh
Q 028883 122 GVEAHLS 128 (202)
Q Consensus 122 G~aa~Lp 128 (202)
...+.|.
T Consensus 83 ~~~s~la 89 (120)
T cd05710 83 DEDSPLA 89 (120)
T ss_pred CCCCcHH
Confidence 4444443
No 439
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=38.70 E-value=2.3e+02 Score=25.68 Aligned_cols=104 Identities=12% Similarity=0.143 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHH-hCCCeEEEEEccCC-CchHHHHHHHHHhhcCceEEEEecCC-cCchhh--------hhhhccCC
Q 028883 69 LDLPVMNDAARTLSD-FGVPYEIKILPPHQ-NCKEALSYALSAKERGIKIIIVGDGV-EAHLSG--------VAAANSQI 137 (202)
Q Consensus 69 SD~~v~~~a~~~L~~-~gi~~ev~V~SaHR-tp~~l~~~~~~~~~~g~~ViIa~AG~-aa~Lpg--------vvA~~T~~ 137 (202)
.|.+.++++.+.+.+ .++|..+++-.-+. ......++++.+++.|++.|..-+.. .....| -+.-.+..
T Consensus 116 ~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~i 195 (321)
T PRK10415 116 QYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSI 195 (321)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcCC
Confidence 477788888777754 67777766643222 33467788888888898876544322 111111 23335778
Q ss_pred cEEEecCCCCCCChhhHHHhhcC--CCCCeeeEEecCChh
Q 028883 138 LVIRVPLLSEDWSEDDVINSIRM--PSHVQVASVPRNNAK 175 (202)
Q Consensus 138 PVIgVP~~~~~l~G~DLlS~vqM--P~GvpVatV~I~n~~ 175 (202)
|||+. ++-.+.-|...+++. ..||-++.=.+.|+.
T Consensus 196 PVI~n---GgI~s~~da~~~l~~~gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 196 PVIAN---GDITDPLKARAVLDYTGADALMIGRAAQGRPW 232 (321)
T ss_pred cEEEe---CCCCCHHHHHHHHhccCCCEEEEChHhhcCCh
Confidence 99983 222233345566653 334333333344554
No 440
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=38.65 E-value=1.8e+02 Score=31.58 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=59.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccC--CCchHHHHHHHHHhhcCceEEEEecCCcCchh----hhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPH--QNCKEALSYALSAKERGIKIIIVGDGVEAHLS----GVAA 132 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaH--Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp----gvvA 132 (202)
..+.+++.++||+....+|.+.+. -|+| .++.++.- +.|..+..|++...+..--|||=.=|+..+.+ -+.+
T Consensus 25 a~~v~ls~~dsdl~~l~~a~~~~~-~~~~-~lr~~~~~~l~~~~~~d~~~~~~~~~a~~v~v~~lGg~~~w~yg~e~l~~ 102 (1122)
T TIGR02257 25 ADIVFLSSADSDLALLAAAWKALP-DDLP-SLRLANLDNLQHPASVDLYVDSTARKAKIIVVRLLGGRGYWSYGLEQLQA 102 (1122)
T ss_pred ccEEEEEeccchHHHHHHHHHHhh-cCCc-ceEecChhhcCCHHHHHHHHHHHhccCcEEEEECCCCchhhHHHHHHHHH
Confidence 478999999999999999987654 3555 67887754 47888889988775543234555557777655 2221
Q ss_pred --hccCCcEEEecCC
Q 028883 133 --ANSQILVIRVPLL 145 (202)
Q Consensus 133 --~~T~~PVIgVP~~ 145 (202)
.....|++-+|-.
T Consensus 103 ~~~~~~~~l~~~~g~ 117 (1122)
T TIGR02257 103 WAEERGRQLILLPGD 117 (1122)
T ss_pred HHHhcCCeEEEeCCC
Confidence 1236899998875
No 441
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=38.60 E-value=1.4e+02 Score=24.88 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=25.6
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 105 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~ 105 (202)
+++++|+|+++.+ ...+++.|.+.|.. +. -..|.++++.++
T Consensus 6 ~k~vlVtGas~gI--G~~ia~~l~~~G~~--V~--~~~r~~~~~~~~ 46 (263)
T PRK06200 6 GQVALITGGGSGI--GRALVERFLAEGAR--VA--VLERSAEKLASL 46 (263)
T ss_pred CCEEEEeCCCchH--HHHHHHHHHHCCCE--EE--EEeCCHHHHHHH
Confidence 4688999998855 56677777777753 32 234555544433
No 442
>smart00642 Aamy Alpha-amylase domain.
Probab=38.59 E-value=1.3e+02 Score=24.68 Aligned_cols=50 Identities=28% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHHHHhCCCeE-E----------------------EEEccCCCchHHHHHHHHHhhcCceEEE
Q 028883 69 LDLPVMNDAARTLSDFGVPYE-I----------------------KILPPHQNCKEALSYALSAKERGIKIII 118 (202)
Q Consensus 69 SD~~v~~~a~~~L~~~gi~~e-v----------------------~V~SaHRtp~~l~~~~~~~~~~g~~ViI 118 (202)
-|+.-+.+-...|+++|+..- + .+-+..=+.+.+.++++++.++|++|++
T Consensus 16 G~~~gi~~~l~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~Gt~~d~~~lv~~~h~~Gi~vil 88 (166)
T smart00642 16 GDLQGIIEKLDYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFGTMEDFKELVDAAHARGIKVIL 88 (166)
T ss_pred cCHHHHHHHHHHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccCCHHHHHHHHHHHHHCCCEEEE
Confidence 356665555568899998621 0 1111223568899999999999998874
No 443
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=38.52 E-value=1.8e+02 Score=26.15 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCe---------------EEEEEccCCCchHHHHHH---HHHhhcCceEEEEecCCcCchhhhhhhcc
Q 028883 74 MNDAARTLSDFGVPY---------------EIKILPPHQNCKEALSYA---LSAKERGIKIIIVGDGVEAHLSGVAAANS 135 (202)
Q Consensus 74 ~~~a~~~L~~~gi~~---------------ev~V~SaHRtp~~l~~~~---~~~~~~g~~ViIa~AG~aa~LpgvvA~~T 135 (202)
+.+-.+.|.+-|||+ .+++. =|+.++..+++ +.+++-|++.++. =|....+.--+....
T Consensus 119 ~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i~--grt~~~a~~~i~ra~a~~eAGA~~i~l-E~v~~~~~~~i~~~l 195 (264)
T PRK00311 119 VAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKVQ--GRDEEAAEKLLEDAKALEEAGAFALVL-ECVPAELAKEITEAL 195 (264)
T ss_pred HHHHHHHHHHCCCCEeeeecccceeecccCCeeee--cCCHHHHHHHHHHHHHHHHCCCCEEEE-cCCCHHHHHHHHHhC
Confidence 334444555668775 24442 37776555555 4456778764443 233557888899999
Q ss_pred CCcEEEec
Q 028883 136 QILVIRVP 143 (202)
Q Consensus 136 ~~PVIgVP 143 (202)
+.|+||+=
T Consensus 196 ~iP~igiG 203 (264)
T PRK00311 196 SIPTIGIG 203 (264)
T ss_pred CCCEEEec
Confidence 99999963
No 444
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=38.51 E-value=1.9e+02 Score=24.51 Aligned_cols=65 Identities=5% Similarity=0.005 Sum_probs=0.0
Q ss_pred CeEEEEecCC--CCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc
Q 028883 59 PIVGIIMESD--LDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (202)
Q Consensus 59 ~~V~IimGS~--SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a 124 (202)
.+|+||..++ .....++...+.+++.|+.......-.+...+ ....+++...++.++||..+..+
T Consensus 136 ~~v~ii~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~d-~~~~~~~~~~~~~d~i~~~~~~~ 202 (334)
T cd06347 136 KKAAVLYDNSSDYSKGLAKAFKEAFKKLGGEIVAEETFNAGDTD-FSAQLTKIKAKNPDVIFLPGYYT 202 (334)
T ss_pred cEEEEEEeCCCchhHHHHHHHHHHHHHcCCEEEEEEEecCCCCc-HHHHHHHHHhcCCCEEEEcCchh
No 445
>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=38.42 E-value=1.7e+02 Score=24.58 Aligned_cols=56 Identities=18% Similarity=0.211 Sum_probs=42.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
.=+|+.|.-.|-.+-.-..++++++|+.. +...|+.+.+ ++++++...|++++|+.
T Consensus 89 ~~~vv~G~i~sd~~~~~~e~~~~~~gl~~---~~PLW~~~~~--~ll~e~~~~g~~~~iv~ 144 (194)
T cd01994 89 VDAVVFGAILSEYQRTRVERVCERLGLEP---LAPLWGRDQE--ELLREMIEAGFKAIIIK 144 (194)
T ss_pred CCEEEECccccHHHHHHHHHHHHHcCCEE---EecccCCCHH--HHHHHHHHcCCeEEEEE
Confidence 34789999888889999999999999863 4455555443 57778888999866653
No 446
>PF14528 LAGLIDADG_3: LAGLIDADG-like domain; PDB: 2CW7_A 2CW8_A 2VS8_F 2VS7_G 1B24_A 1DQ3_A 2DCH_X.
Probab=38.41 E-value=39 Score=23.51 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEE
Q 028883 67 SDLDLPVMNDAARTLSDFGVPYEIKI 92 (202)
Q Consensus 67 S~SD~~v~~~a~~~L~~~gi~~ev~V 92 (202)
++.|.+.+++....|.+|||...+..
T Consensus 27 ~~~s~~ll~~v~~lL~~lGi~~~i~~ 52 (77)
T PF14528_consen 27 SSKSKELLEDVQKLLLRLGIKASIYE 52 (77)
T ss_dssp EES-HHHHHHHHHHHHHTT--EEEEE
T ss_pred EECCHHHHHHHHHHHHHCCCeeEEEE
Confidence 35788999999999999999876553
No 447
>PRK08265 short chain dehydrogenase; Provisional
Probab=38.34 E-value=1.6e+02 Score=24.66 Aligned_cols=41 Identities=15% Similarity=0.119 Sum_probs=24.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSY 105 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~ 105 (202)
.++.+|+|+++. +...+++.|-+-|. ++ +-..|.++++.++
T Consensus 6 ~k~vlItGas~g--IG~~ia~~l~~~G~--~V--~~~~r~~~~~~~~ 46 (261)
T PRK08265 6 GKVAIVTGGATL--IGAAVARALVAAGA--RV--AIVDIDADNGAAV 46 (261)
T ss_pred CCEEEEECCCCh--HHHHHHHHHHHCCC--EE--EEEeCCHHHHHHH
Confidence 468889998884 56667777766665 33 2234555444333
No 448
>COG2901 Fis Factor for inversion stimulation Fis, transcriptional activator [Transcription / DNA replication, recombination, and repair]
Probab=38.24 E-value=27 Score=27.36 Aligned_cols=20 Identities=35% Similarity=0.594 Sum_probs=17.7
Q ss_pred HHHHHHccCCHHHHHHHHHH
Q 028883 180 YAVKVLGIADEDLLERIRKY 199 (202)
Q Consensus 180 ~Aa~IL~~~d~~l~~kl~~~ 199 (202)
.|+-+||++.--|++||++|
T Consensus 76 rAa~mLGinR~TLRKKLkqy 95 (98)
T COG2901 76 RAALMLGINRGTLRKKLKKY 95 (98)
T ss_pred HHHHHHcccHHHHHHHHHHh
Confidence 45668999999999999998
No 449
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.06 E-value=1e+02 Score=28.14 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=46.5
Q ss_pred CeEEEEecCCCCH-HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcC-ceEEEE
Q 028883 59 PIVGIIMESDLDL-PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG-IKIIIV 119 (202)
Q Consensus 59 ~~V~IimGS~SD~-~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g-~~ViIa 119 (202)
.++.|..|.+.+- -+.+.-.+.++++||.+++.-.+...+.+++.+.++++.++. .+=||.
T Consensus 34 ~Laii~vg~~~as~~Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIiv 96 (286)
T PRK14175 34 KLSVILVGNDGASQSYVRSKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILV 96 (286)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEE
Confidence 4677778877654 455666788899999999999999999999999999886542 344444
No 450
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=38.00 E-value=1.1e+02 Score=26.59 Aligned_cols=69 Identities=14% Similarity=0.023 Sum_probs=45.1
Q ss_pred EEEEecCCCCH--------------HHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHHhhcCceEEEEecCCcC
Q 028883 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEA 125 (202)
Q Consensus 61 V~IimGS~SD~--------------~v~~~a~~~L~~~gi~~ev~V~SaHRt-p~~l~~~~~~~~~~g~~ViIa~AG~aa 125 (202)
..-+..|.||. +-+.++.+.+++.|....+...-..|. |+.+.++++.+.+-|++.|-.+-=.-.
T Consensus 85 ~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~ 164 (259)
T cd07939 85 AVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGI 164 (259)
T ss_pred EEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCC
Confidence 33444478887 345567777778998777666666655 788889999988888865443332333
Q ss_pred chhh
Q 028883 126 HLSG 129 (202)
Q Consensus 126 ~Lpg 129 (202)
..|-
T Consensus 165 ~~P~ 168 (259)
T cd07939 165 LDPF 168 (259)
T ss_pred CCHH
Confidence 3443
No 451
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=37.69 E-value=2.5e+02 Score=25.37 Aligned_cols=54 Identities=22% Similarity=0.220 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHH-hC-----CCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecC
Q 028883 68 DLDLPVMNDAARTLSD-FG-----VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDG 122 (202)
Q Consensus 68 ~SD~~v~~~a~~~L~~-~g-----i~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG 122 (202)
..|...+++..+.+++ .+ +|.-+++. .+=+.+.+.++++.+++.|++-|++..+
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~-~~~~~~~~~~ia~~l~~aGad~I~~~n~ 238 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIA-PDLSDEELEDIADVALEHGVDGIIATNT 238 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC-CCCCHHHHHHHHHHHHHcCCcEEEEECC
Confidence 5677777777666654 44 88888885 4434457888888888888887766543
No 452
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=37.69 E-value=1.3e+02 Score=27.43 Aligned_cols=51 Identities=6% Similarity=0.146 Sum_probs=38.1
Q ss_pred CHHHHHHHHHHHHHhCCCeEEEEEccC-------------CCch-HHHHHHHHHhhcCceEEEEe
Q 028883 70 DLPVMNDAARTLSDFGVPYEIKILPPH-------------QNCK-EALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 70 D~~v~~~a~~~L~~~gi~~ev~V~SaH-------------Rtp~-~l~~~~~~~~~~g~~ViIa~ 120 (202)
....+++.++.+++.+||+++-+.-.+ |-|+ +..++++++.++|+++++-+
T Consensus 22 ~~~~v~~~~~~~r~~~iP~d~i~lD~~~~~~~~~f~~d~~~FPdp~~~~mi~~L~~~G~k~~~~i 86 (339)
T cd06602 22 NVDEVKEVVENMRAAGIPLDVQWNDIDYMDRRRDFTLDPVRFPGLKMPEFVDELHANGQHYVPIL 86 (339)
T ss_pred CHHHHHHHHHHHHHhCCCcceEEECcccccCccceecccccCCCccHHHHHHHHHHCCCEEEEEE
Confidence 345577888888999999998776533 5565 35778888889999877644
No 453
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=37.57 E-value=98 Score=28.40 Aligned_cols=54 Identities=11% Similarity=0.112 Sum_probs=42.6
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhc
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER 112 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~ 112 (202)
.++.|..|.+. +.-+.+...+.++++||.+++.-.+.+-+-+++.+.++++.++
T Consensus 33 ~LaiI~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D 87 (297)
T PRK14167 33 GLATVLMSDDPASETYVSMKQRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNAD 87 (297)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45666666554 4556667788889999999999999999999999999888654
No 454
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=37.55 E-value=73 Score=27.17 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=21.9
Q ss_pred ceEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883 114 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 114 ~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
++++|+.-.+..||+. ....|+|++--.+
T Consensus 199 ~~l~I~~Dsg~~HlA~----a~~~p~i~l~g~~ 227 (279)
T cd03789 199 ADLVVTNDSGPMHLAA----ALGTPTVALFGPT 227 (279)
T ss_pred CCEEEeeCCHHHHHHH----HcCCCEEEEECCC
Confidence 7999999888888874 3467888875443
No 455
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=37.37 E-value=1.2e+02 Score=27.33 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
..+-+..++++.|++.-.+++.-.|+...+.+.+..+...|++=|.+..|-
T Consensus 70 ~~~~a~~i~~~~g~~~i~Hltcr~~n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 70 THSIIKGIKKRTGLEAAPHLTCIDATPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHHHHHHhCCCeeeecccCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 333455555889999999999999999999999999999999877787776
No 456
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=37.36 E-value=49 Score=31.65 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=29.1
Q ss_pred hHHHHHHHHHhhcCceEEEEecCCcCchhhh--hhh-----ccCCcEEEecCC
Q 028883 100 KEALSYALSAKERGIKIIIVGDGVEAHLSGV--AAA-----NSQILVIRVPLL 145 (202)
Q Consensus 100 ~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpgv--vA~-----~T~~PVIgVP~~ 145 (202)
+...+.++.+++.+++.+|++-|-.. +-+. ++- ...+||||+|-.
T Consensus 99 ~~~~~~~~~L~~~~Id~Li~IGGdgS-~~~a~~L~~~~~~~g~~i~vvgIPkT 150 (403)
T PRK06555 99 NPLKVAAERLAADGVDILHTIGGDDT-NTTAADLAAYLAENGYDLTVVGLPKT 150 (403)
T ss_pred HHHHHHHHHHHHcCCCEEEEECChhH-HHHHHHHHHHHHHhCCCceEEEeeee
Confidence 34566777788888888887755433 2222 221 237999999975
No 457
>PRK00430 fis global DNA-binding transcriptional dual regulator Fis; Provisional
Probab=37.24 E-value=28 Score=26.55 Aligned_cols=21 Identities=33% Similarity=0.513 Sum_probs=18.6
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 028883 180 YAVKVLGIADEDLLERIRKYV 200 (202)
Q Consensus 180 ~Aa~IL~~~d~~l~~kl~~~~ 200 (202)
-|+++|+++...||.||++|.
T Consensus 73 ~AAr~LGIsRsTL~rKLkr~g 93 (95)
T PRK00430 73 RAALMLGINRGTLRKKLKKYG 93 (95)
T ss_pred HHHHHhCCCHHHHHHHHHHhC
Confidence 467999999999999999874
No 458
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=37.17 E-value=51 Score=32.59 Aligned_cols=127 Identities=16% Similarity=0.193 Sum_probs=68.2
Q ss_pred cCceeEecCChhhhhhccccCcCCCCCCccccccCCCCCCCCCCeEEEEecCCCCHHHHHHHHHHH----HHh-------
Q 028883 16 RGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTL----SDF------- 84 (202)
Q Consensus 16 ~ghi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~IimGS~SD~~v~~~a~~~L----~~~------- 84 (202)
.|.-|-...+.++.++.+..+.. -|.--|.............+|||+++| -|-|-+..+..-+ ...
T Consensus 27 ~~~~~~~~~~~~~i~~~fp~~~~--~~~~~~~~~~~~~~~~~~~rIgIl~sG-G~aPG~N~vI~gv~~~~~~~~~~~~v~ 103 (539)
T TIGR02477 27 DGEPTAAVADQEELKELFPNTYG--LPIITFEPGEASPDEHQPLKIGVILSG-GQAPGGHNVISGLFDALKKLNPNSKLY 103 (539)
T ss_pred ccCcccCCCCHHHHHHhChHhhC--CccEEEecCCCCcccccceEEEEECCC-CCChHHHHHHHHHHHHHHHhCCCcEEE
Confidence 34444444455566666655431 111112222111112233589999876 6888777665433 222
Q ss_pred CCC-----------eEE------------E--EEccCC----CchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh-
Q 028883 85 GVP-----------YEI------------K--ILPPHQ----NCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA- 133 (202)
Q Consensus 85 gi~-----------~ev------------~--V~SaHR----tp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~- 133 (202)
|+. .++ + +.+--| +++...+.++..++.+++.+|.+.|-... -+-.++-
T Consensus 104 G~~~G~~GLl~~~~~~Lt~~~v~~~~~~GG~~~LGssR~k~~~~e~~~~~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~ 183 (539)
T TIGR02477 104 GFIGGPLGLLDNNYVELTKELIDTYRNTGGFDIIGSGRTKIETEEQFAKALTTAKKLKLDGLVIIGGDDSNTNAALLAEY 183 (539)
T ss_pred EEecChHHhcCCCeEeCCHHHHhHHHhCCCchhhcCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHH
Confidence 221 011 1 333333 45677788888999999877777554222 2223332
Q ss_pred ----ccCCcEEEecCC
Q 028883 134 ----NSQILVIRVPLL 145 (202)
Q Consensus 134 ----~T~~PVIgVP~~ 145 (202)
....||||||-.
T Consensus 184 ~~~~g~~i~VIGIPkT 199 (539)
T TIGR02477 184 FAKHGLKTQVIGVPKT 199 (539)
T ss_pred HHhcCCCceEEEEeee
Confidence 357999999986
No 459
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=37.10 E-value=1.8e+02 Score=23.85 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=22.5
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~ 107 (202)
+++.+|+|+++.+ ....++.|.+-|. +|+...|+++.+.++.+
T Consensus 11 ~k~ilItGas~~I--G~~la~~l~~~G~----~v~~~~r~~~~~~~~~~ 53 (256)
T PRK06124 11 GQVALVTGSARGL--GFEIARALAGAGA----HVLVNGRNAATLEAAVA 53 (256)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcCC----eEEEEeCCHHHHHHHHH
Confidence 4677888877655 4444444444443 23334445544444433
No 460
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=37.00 E-value=2.8e+02 Score=24.12 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=19.8
Q ss_pred ceEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883 114 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 114 ~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
++++|.-+|. ..-+=|...-+|||.+|..+
T Consensus 253 ~d~~i~~~g~---~~~~Ea~~~g~Pvv~~~~~~ 282 (357)
T PRK00726 253 ADLVICRAGA---STVAELAAAGLPAILVPLPH 282 (357)
T ss_pred CCEEEECCCH---HHHHHHHHhCCCEEEecCCC
Confidence 6888876652 22223445789999999753
No 461
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=36.91 E-value=1.8e+02 Score=24.29 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=16.2
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi 86 (202)
.++.+|+|+.+. +...+++.|-+.|.
T Consensus 10 ~k~~lItGa~~~--iG~~ia~~l~~~G~ 35 (265)
T PRK07097 10 GKIALITGASYG--IGFAIAKAYAKAGA 35 (265)
T ss_pred CCEEEEeCCCch--HHHHHHHHHHHCCC
Confidence 467778887773 34555665655554
No 462
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=36.78 E-value=87 Score=23.16 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHH
Q 028883 69 LDLPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALS 108 (202)
Q Consensus 69 SD~~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~ 108 (202)
+.=+.+++|.+.|++.|++|+..=. .-.-+.+++.++...
T Consensus 7 ~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~~l~~~~~~ 47 (105)
T cd02977 7 PNCSTSRKALAWLEEHGIEYEFIDYLKEPPTKEELKELLAK 47 (105)
T ss_pred CCCHHHHHHHHHHHHcCCCcEEEeeccCCCCHHHHHHHHHh
Confidence 3468899999999999999986544 344556667666653
No 463
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=36.78 E-value=2.6e+02 Score=24.04 Aligned_cols=64 Identities=14% Similarity=0.113 Sum_probs=42.6
Q ss_pred CeEEEEecCCC-CHHHHHHHHHHHHHhCCCeEEEEEccCCC--chHHHHHHHHHhhcCceEEEEecCC
Q 028883 59 PIVGIIMESDL-DLPVMNDAARTLSDFGVPYEIKILPPHQN--CKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 59 ~~V~IimGS~S-D~~v~~~a~~~L~~~gi~~ev~V~SaHRt--p~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
.+|+++...+. .....+...+.+++.|+.....+. .-.. ......+++..+..+.++||.....
T Consensus 161 ~~v~~l~~~~~~g~~~~~~~~~~~~~~gi~v~~~~~-~~~~~~~~d~~~~l~~l~~~~~~vvv~~~~~ 227 (348)
T cd06350 161 TWVGLVYSDDDYGRSGLSDLEEELEKNGICIAFVEA-IPPSSTEEDIKRILKKLKSSTARVIVVFGDE 227 (348)
T ss_pred eEEEEEEecchhHHHHHHHHHHHHHHCCCcEEEEEE-ccCCCcHHHHHHHHHHHHhCCCcEEEEEeCc
Confidence 57888886443 345677777888889987543222 2222 4567777788877888888887654
No 464
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=36.74 E-value=2e+02 Score=25.85 Aligned_cols=68 Identities=9% Similarity=0.069 Sum_probs=52.1
Q ss_pred HHHHHH-HHhCCCeEEEEE--ccCC--CchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecC
Q 028883 76 DAARTL-SDFGVPYEIKIL--PPHQ--NCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPL 144 (202)
Q Consensus 76 ~a~~~L-~~~gi~~ev~V~--SaHR--tp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~ 144 (202)
.+...| ++||+... .+. +... +|.++.++++..++.++++|++-...+.-..-.++..|..+|+.+.+
T Consensus 211 ~af~Yf~~~ygl~~~-~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~la~e~g~~v~~ldp 283 (311)
T PRK09545 211 DAYGYFEKHYGLTPL-GHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVIESVAKGTSVRMGTLDP 283 (311)
T ss_pred chHHHHHHhCCCcee-eeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCChHHHHHHHHhcCCeEEEecc
Confidence 344433 56888742 222 2333 67999999999999999999999999999999999999999887733
No 465
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=36.64 E-value=2.3e+02 Score=22.92 Aligned_cols=78 Identities=10% Similarity=0.147 Sum_probs=40.2
Q ss_pred EEEEecCC----CC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhh-
Q 028883 61 VGIIMESD----LD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAA- 132 (202)
Q Consensus 61 V~IimGS~----SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA- 132 (202)
|+|+.... +| ....+.+.+.++++|+...+. ..-...+....+.+....+.++.||..+.... -+ .+.
T Consensus 2 igvi~p~~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~-~~-~~~~ 77 (268)
T cd06271 2 IGLVLPTGEREEGDPFFAEFLSGLSEALAEHGYDLVLL--PVDPDEDPLEVYRRLVESGLVDGVIISRTRPD-DP-RVAL 77 (268)
T ss_pred eEEEeCCcccccCCccHHHHHHHHHHHHHHCCceEEEe--cCCCcHHHHHHHHHHHHcCCCCEEEEecCCCC-Ch-HHHH
Confidence 56776541 12 234567778888998765444 33233333333333333455777776554322 11 121
Q ss_pred -hccCCcEEEe
Q 028883 133 -ANSQILVIRV 142 (202)
Q Consensus 133 -~~T~~PVIgV 142 (202)
-.-..|||.+
T Consensus 78 ~~~~~ipvV~~ 88 (268)
T cd06271 78 LLERGFPFVTH 88 (268)
T ss_pred HHhcCCCEEEE
Confidence 2346688876
No 466
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=36.64 E-value=2.6e+02 Score=23.82 Aligned_cols=122 Identities=9% Similarity=0.040 Sum_probs=63.4
Q ss_pred CeEEEEecCCC-------CHHHHHHHHHHHHHhCCC-eEEEEEccCCCchHHHHHHHHHhh-cCceEEEEecCCc----C
Q 028883 59 PIVGIIMESDL-------DLPVMNDAARTLSDFGVP-YEIKILPPHQNCKEALSYALSAKE-RGIKIIIVGDGVE----A 125 (202)
Q Consensus 59 ~~V~IimGS~S-------D~~v~~~a~~~L~~~gi~-~ev~V~SaHRtp~~l~~~~~~~~~-~g~~ViIa~AG~a----a 125 (202)
.+++||+=|++ |. -..-+.+.|+++|.. +++...-.--.++.+.+.++++.+ .++++||+-.|.+ .
T Consensus 4 ~~~aIItvSd~~~~G~i~D~-ng~~L~~~L~~~G~~g~~v~~~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~g~rD 82 (193)
T PRK09417 4 LKIGLVSISDRASSGVYEDK-GIPALEEWLASALTSPFEIETRLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGPARRD 82 (193)
T ss_pred cEEEEEEEcCcCCCCceeec-hHHHHHHHHHHcCCCCceEEEEECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCCCCCC
Confidence 57889887763 22 233456668888764 333322223334455555555543 4689888874433 2
Q ss_pred chhhhhhhccCCcEEEecCCC----CCCChhhHHHhhcCCCCCe--eeEEecCChhhHHHHHHH
Q 028883 126 HLSGVAAANSQILVIRVPLLS----EDWSEDDVINSIRMPSHVQ--VASVPRNNAKNAALYAVK 183 (202)
Q Consensus 126 ~LpgvvA~~T~~PVIgVP~~~----~~l~G~DLlS~vqMP~Gvp--VatV~I~n~~NAAl~Aa~ 183 (202)
..|-++.....+++-|++-.- .......+|| ++-.|+- -.+++.-+..+|+..+.+
T Consensus 83 vTpeAv~~l~~keipG~~e~~r~~s~~~~~~a~LS--Ra~agv~~~tlI~nLPGSp~a~~~~le 144 (193)
T PRK09417 83 VTPEATLAVADKEMPGFGEQMRQISLKFVPTAILS--RQVAVIRGQSLIINLPGQPKSIKETLE 144 (193)
T ss_pred cHHHHHHHHhCCcCCcHHHHHHHHhcccccHHHhh--cceeEEeCCEEEEECCCCHHHHHHHHH
Confidence 355566655555555544210 0111122332 1112221 135666688888877776
No 467
>PRK09389 (R)-citramalate synthase; Provisional
Probab=36.61 E-value=1.8e+02 Score=28.14 Aligned_cols=72 Identities=15% Similarity=0.025 Sum_probs=52.1
Q ss_pred EEEEecCCCCH--------------HHHHHHHHHHHHhCCCeEEEEEccCCC-chHHHHHHHHHhhcCceEEEEecCCcC
Q 028883 61 VGIIMESDLDL--------------PVMNDAARTLSDFGVPYEIKILPPHQN-CKEALSYALSAKERGIKIIIVGDGVEA 125 (202)
Q Consensus 61 V~IimGS~SD~--------------~v~~~a~~~L~~~gi~~ev~V~SaHRt-p~~l~~~~~~~~~~g~~ViIa~AG~aa 125 (202)
+.-+..+.||+ ..+.++.+.+++.|..+++....+.|+ |+.+.++++.+.+-|++.|..+.=.-.
T Consensus 89 ~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~ 168 (488)
T PRK09389 89 SVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI 168 (488)
T ss_pred EEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence 44555689998 345566677778999888888888887 677778999888888877665555555
Q ss_pred chhhhhh
Q 028883 126 HLSGVAA 132 (202)
Q Consensus 126 ~LpgvvA 132 (202)
.+|.-+.
T Consensus 169 ~~P~~~~ 175 (488)
T PRK09389 169 LTPEKTY 175 (488)
T ss_pred cCHHHHH
Confidence 5665554
No 468
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=36.60 E-value=1.4e+02 Score=21.09 Aligned_cols=56 Identities=18% Similarity=0.258 Sum_probs=34.2
Q ss_pred eEEEEecC--CCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCc
Q 028883 60 IVGIIMES--DLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVE 124 (202)
Q Consensus 60 ~V~IimGS--~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~a 124 (202)
+|.+++|+ .|-+=..++..+.+++.|+++++.-.+ -....++. ..+++|+...-..
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~----~~~~~~~~-----~~~D~il~~~~i~ 58 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGS----ILEVEEIA-----DDADLILLTPQIA 58 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEE----TTTHHHHH-----TT-SEEEEEESSG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEec----cccccccc-----CCCcEEEEcCccc
Confidence 35566644 344445589999999999776655444 22233332 3479999876655
No 469
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.48 E-value=54 Score=30.10 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCeE-------------------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCch
Q 028883 73 VMNDAARTLSDFGVPYE-------------------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHL 127 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~e-------------------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~L 127 (202)
+...+.++|+++|++++ ..|...||....+.+++++ ++++|.+.|....+
T Consensus 142 Tp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l~e~~~~-----ADIVIsavg~~~~v 216 (301)
T PRK14194 142 TPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDAKALCRQ-----ADIVVAAVGRPRLI 216 (301)
T ss_pred cHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCHHHHHhc-----CCEEEEecCChhcc
Q ss_pred hhhh
Q 028883 128 SGVA 131 (202)
Q Consensus 128 pgvv 131 (202)
....
T Consensus 217 ~~~~ 220 (301)
T PRK14194 217 DADW 220 (301)
T ss_pred cHhh
No 470
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=36.47 E-value=1.1e+02 Score=28.83 Aligned_cols=37 Identities=14% Similarity=0.220 Sum_probs=28.9
Q ss_pred EEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchH
Q 028883 63 IIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKE 101 (202)
Q Consensus 63 IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~ 101 (202)
|++=|++.=|.|.++++.|++.||+|+..=++ +.++.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~--~~~~~ 40 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGANDIPFTQISLD--DDVKR 40 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCCeEEEECC--CChhH
Confidence 44556788899999999999999999865554 55543
No 471
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=36.46 E-value=1.3e+02 Score=27.05 Aligned_cols=65 Identities=9% Similarity=0.097 Sum_probs=43.4
Q ss_pred CeEEEEecCCCCH-----HHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCc
Q 028883 59 PIVGIIMESDLDL-----PVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAH 126 (202)
Q Consensus 59 ~~V~IimGS~SD~-----~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~ 126 (202)
.+|+||.- ++|. ..++...+.+++.|+.+...... ........+++++.++++ +|||.++..+.+
T Consensus 138 ~~vaiiy~-~~~~~~~~~~~~~~l~~~~~~~gi~v~~~~~~-~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~ 207 (387)
T cd06386 138 RSALLVYE-DDKQERNCYFTLEGVHHVFQEEGYHMSIYPFD-ETKDLDLDEIIRAIQASE-RVVIMCAGADTI 207 (387)
T ss_pred eEEEEEEE-cCCCCccceehHHHHHHHHHhcCceEEEEecC-CCCcccHHHHHHHHHhcC-cEEEEecCHHHH
Confidence 57888873 3442 23777788888999876654322 233457778888887777 999988765433
No 472
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=36.33 E-value=2.6e+02 Score=23.48 Aligned_cols=62 Identities=10% Similarity=0.097 Sum_probs=42.0
Q ss_pred CCCeEEEEecCCCC---HHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEe
Q 028883 57 DAPIVGIIMESDLD---LPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 57 ~~~~V~IimGS~SD---~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~ 120 (202)
+...|+++.-+.++ ....+.+.+.++++|+ ++.+.......+.-.++++.+..++++-||..
T Consensus 34 ~~~~ig~v~~~~~~~~~~~~~~gi~~~~~~~g~--~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~ 98 (309)
T PRK11041 34 ESRTILVIVPDICDPFFSEIIRGIEVTAAEHGY--LVLIGDCAHQNQQEKTFVNLIITKQIDGMLLL 98 (309)
T ss_pred CCcEEEEEeCCCcCccHHHHHHHHHHHHHHCCC--EEEEEeCCCChHHHHHHHHHHHHcCCCEEEEe
Confidence 44689988865433 4455678888888885 44454455566666778888877888866654
No 473
>PRK08643 acetoin reductase; Validated
Probab=36.31 E-value=1.6e+02 Score=24.24 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=13.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhC
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFG 85 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~g 85 (202)
++++|+|+++.+ ...+++.|-+-|
T Consensus 3 k~~lItGas~gi--G~~la~~l~~~G 26 (256)
T PRK08643 3 KVALVTGAGQGI--GFAIAKRLVEDG 26 (256)
T ss_pred CEEEEECCCChH--HHHHHHHHHHCC
Confidence 466777777663 344444454444
No 474
>PRK07074 short chain dehydrogenase; Provisional
Probab=36.27 E-value=2.2e+02 Score=23.45 Aligned_cols=25 Identities=12% Similarity=0.080 Sum_probs=14.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCC
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGV 86 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi 86 (202)
++.+|+|+++. +....++.|.+-|.
T Consensus 3 k~ilItGat~~--iG~~la~~L~~~g~ 27 (257)
T PRK07074 3 RTALVTGAAGG--IGQALARRFLAAGD 27 (257)
T ss_pred CEEEEECCcch--HHHHHHHHHHHCCC
Confidence 35677777763 45555665655553
No 475
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=36.16 E-value=38 Score=31.73 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=34.9
Q ss_pred CCCCcc---ccccC--CC-CCCCCCCeEEEEecCC-----CCHHHHHHHHHHHHHhCCC
Q 028883 40 REPSTV---FEEEN--PN-GDSTDAPIVGIIMESD-----LDLPVMNDAARTLSDFGVP 87 (202)
Q Consensus 40 ~~~~~~---~~~~~--~~-~~~~~~~~V~IimGS~-----SD~~v~~~a~~~L~~~gi~ 87 (202)
-||+|+ |+... .+ -...++..|++|+|+. +|+.+.++..++|++|+..
T Consensus 42 PeDSD~N~if~avkiydeL~~~GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~ 100 (344)
T PF04123_consen 42 PEDSDVNAIFGAVKIYDELKAEGEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPD 100 (344)
T ss_pred cccccHHHHHHHHHHHHHHHhcCCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCC
Confidence 577776 65554 00 1113357899999986 6899999999999999985
No 476
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=36.10 E-value=84 Score=21.65 Aligned_cols=25 Identities=28% Similarity=0.456 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccC
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPH 96 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaH 96 (202)
+.+.++...|++.|++|++..+...
T Consensus 10 ~~~~~v~~~l~~~gl~~~~~~~~~~ 34 (81)
T cd03048 10 PNGFKVSIMLEELGLPYEIHPVDIS 34 (81)
T ss_pred CChHHHHHHHHHcCCCcEEEEecCc
Confidence 8889999999999999998777653
No 477
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=36.05 E-value=2.3e+02 Score=22.79 Aligned_cols=83 Identities=14% Similarity=0.209 Sum_probs=54.8
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE---------------EEEEccCCCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE---------------IKILPPHQNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~e---------------v~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
.+|-| .|.-+-...++....-|..+|+++. +-+.|..+...++.+.++.+.++|+++|-...-.
T Consensus 34 ~~I~i-~G~G~S~~~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~ 112 (179)
T cd05005 34 KRIFV-YGAGRSGLVAKAFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNP 112 (179)
T ss_pred CeEEE-EecChhHHHHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 35544 4444447889999988888887643 4677788888888888888888888765443334
Q ss_pred cCchhhhhhhccCCcEEEecCCCC
Q 028883 124 EAHLSGVAAANSQILVIRVPLLSE 147 (202)
Q Consensus 124 aa~LpgvvA~~T~~PVIgVP~~~~ 147 (202)
.+.|. ...+. ++-+|....
T Consensus 113 ~s~la----~~ad~-~l~~~~~~~ 131 (179)
T cd05005 113 DSPLA----KLADV-VVVIPAATK 131 (179)
T ss_pred CCchH----HhCCE-EEEeCCccc
Confidence 44443 33343 566776543
No 478
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=35.96 E-value=1.9e+02 Score=26.58 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=33.2
Q ss_pred HHHHHHHHHHH-hCCCeEEEEEccC-----CCchHHHHHHHHHhhcCceEEEEecCC
Q 028883 73 VMNDAARTLSD-FGVPYEIKILPPH-----QNCKEALSYALSAKERGIKIIIVGDGV 123 (202)
Q Consensus 73 v~~~a~~~L~~-~gi~~ev~V~SaH-----Rtp~~l~~~~~~~~~~g~~ViIa~AG~ 123 (202)
.+.|+.+.+++ .+.+.-+++.... -++++..++++.+++.|++.|-+..|.
T Consensus 194 f~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~ 250 (337)
T PRK13523 194 FLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGA 250 (337)
T ss_pred HHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 33344433333 3556677776533 367888899999999898877766664
No 479
>PF02514 CobN-Mg_chel: CobN/Magnesium Chelatase; InterPro: IPR003672 This family contains a domain common to the cobN protein and to magnesium protoporphyrin chelatase. CobN may play a role in cobalt insertion reactions and is implicated in the conversion of precorrin-2 to cobyrinic acid in cobalamin biosynthesis []. Magnesium protoporphyrin chelatase is involved in chlorophyll biosynthesis as the third subunit of light-independent protochlorophyllide reductase in bacteria and plants [].; GO: 0009058 biosynthetic process
Probab=35.94 E-value=2.3e+02 Score=30.58 Aligned_cols=90 Identities=16% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCCeEEEEecCC----CCHHHHHHHHHHHHHhCCCeEEEEE-ccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-
Q 028883 56 TDAPIVGIIMESD----LDLPVMNDAARTLSDFGVPYEIKIL-PPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG- 129 (202)
Q Consensus 56 ~~~~~V~IimGS~----SD~~v~~~a~~~L~~~gi~~ev~V~-SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg- 129 (202)
...|.|+|+.... .|..+.....+.|++-|+..-.-.+ |-....+.+++|...-.+..+++||..-+....-+.
T Consensus 69 ~~~P~VgIlfyrs~~~~g~~~~vdaLI~~LE~~G~nvipvf~~~~~~~~~~i~~~f~~~g~~~vDaIIn~~~f~l~~~~~ 148 (1098)
T PF02514_consen 69 PNRPTVGILFYRSYWLSGNTAVVDALIRALEERGLNVIPVFCSSGPDSQEAIEDYFMDDGKPRVDAIINLTGFSLGGGPA 148 (1098)
T ss_pred CCCCEEEEEeehhhhhcCCcHHHHHHHHHHHHCCCeEEEEEecCccchHHHHHHHHhhcCCCCceEEEEcCccccCCCCc
Confidence 4568999998754 4889999999999999997533332 323455556666554333456899988776533321
Q ss_pred --hhhh--ccCCcEEEecCC
Q 028883 130 --VAAA--NSQILVIRVPLL 145 (202)
Q Consensus 130 --vvA~--~T~~PVIgVP~~ 145 (202)
-+.- .-..|||..-+.
T Consensus 149 ~~~~~~L~~LnVPVlq~i~~ 168 (1098)
T PF02514_consen 149 GGAIELLKELNVPVLQAITL 168 (1098)
T ss_pred chhHHHHHHCCCCEEEeecc
Confidence 2222 368899976655
No 480
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.94 E-value=75 Score=28.99 Aligned_cols=47 Identities=21% Similarity=0.198 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchh
Q 028883 73 VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128 (202)
Q Consensus 73 v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lp 128 (202)
+.+..+..|..-|. .|...|...+.+.++.++ ++++|++.|...-+.
T Consensus 169 VG~Pla~lL~~~gA----tVtv~hs~t~~l~~~~~~-----ADIvV~AvG~p~~i~ 215 (285)
T PRK14191 169 VGKPLAMLMLNAGA----SVSVCHILTKDLSFYTQN-----ADIVCVGVGKPDLIK 215 (285)
T ss_pred hHHHHHHHHHHCCC----EEEEEeCCcHHHHHHHHh-----CCEEEEecCCCCcCC
Confidence 44455555544442 344458777777777653 799999999887765
No 481
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=35.92 E-value=58 Score=32.40 Aligned_cols=48 Identities=19% Similarity=0.178 Sum_probs=32.5
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh-----ccCCcEEEecCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLL 145 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~-----~T~~PVIgVP~~ 145 (202)
+++...+..+..++.+++.+|.+.|-... -+..++- ....+|||||-.
T Consensus 151 ~~e~~~~i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKT 204 (550)
T cd00765 151 TEDQFKQAEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKT 204 (550)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 45677788888888899877777664322 1222332 356899999986
No 482
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=35.77 E-value=1.4e+02 Score=23.26 Aligned_cols=73 Identities=16% Similarity=0.125 Sum_probs=50.4
Q ss_pred EEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEE
Q 028883 61 VGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVI 140 (202)
Q Consensus 61 V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVI 140 (202)
|.|. |.|=-+.+..+.++|..+|+++.+.-.--|-...++.+++.+. .+.++.|.|
T Consensus 16 VVif--SKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~----------------------tg~~tvP~v 71 (104)
T KOG1752|consen 16 VVIF--SKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKL----------------------TGQRTVPNV 71 (104)
T ss_pred EEEE--ECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHh----------------------cCCCCCCEE
Confidence 4444 5577888889999999999998877777777777777776532 233466665
Q ss_pred EecCCCCCCChhh-HHHhhc
Q 028883 141 RVPLLSEDWSEDD-VINSIR 159 (202)
Q Consensus 141 gVP~~~~~l~G~D-LlS~vq 159 (202)
= +.+...+|.+ |.+.-.
T Consensus 72 F--I~Gk~iGG~~dl~~lh~ 89 (104)
T KOG1752|consen 72 F--IGGKFIGGASDLMALHK 89 (104)
T ss_pred E--ECCEEEcCHHHHHHHHH
Confidence 4 3344557766 666543
No 483
>PRK08177 short chain dehydrogenase; Provisional
Probab=35.74 E-value=2.4e+02 Score=22.87 Aligned_cols=26 Identities=8% Similarity=0.133 Sum_probs=16.7
Q ss_pred chHHHHHHHHHhhcCceEEEEecCCc
Q 028883 99 CKEALSYALSAKERGIKIIIVGDGVE 124 (202)
Q Consensus 99 p~~l~~~~~~~~~~g~~ViIa~AG~a 124 (202)
++.+.++.+...+.+++++|-.||..
T Consensus 57 ~~~~~~~~~~~~~~~id~vi~~ag~~ 82 (225)
T PRK08177 57 PASLDQLLQRLQGQRFDLLFVNAGIS 82 (225)
T ss_pred HHHHHHHHHHhhcCCCCEEEEcCccc
Confidence 34445555555445688999888864
No 484
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=35.68 E-value=96 Score=25.31 Aligned_cols=75 Identities=23% Similarity=0.244 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCC
Q 028883 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQI 137 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~ 137 (202)
.++|+++.=.. ..+-+ ..+.+-||++ +.+... .+++.+...++++...|+++||++.. .-=+|..-.+
T Consensus 77 ~~~Iavv~~~~-~~~~~---~~~~~ll~~~--i~~~~~-~~~~e~~~~i~~~~~~G~~viVGg~~-----~~~~A~~~gl 144 (176)
T PF06506_consen 77 GPKIAVVGYPN-IIPGL---ESIEELLGVD--IKIYPY-DSEEEIEAAIKQAKAEGVDVIVGGGV-----VCRLARKLGL 144 (176)
T ss_dssp TSEEEEEEESS--SCCH---HHHHHHHT-E--EEEEEE-SSHHHHHHHHHHHHHTT--EEEESHH-----HHHHHHHTTS
T ss_pred CCcEEEEeccc-ccHHH---HHHHHHhCCc--eEEEEE-CCHHHHHHHHHHHHHcCCcEEECCHH-----HHHHHHHcCC
Confidence 36888876432 22223 3333446774 444444 46899999999999999999998642 3445566666
Q ss_pred cEEEecCCC
Q 028883 138 LVIRVPLLS 146 (202)
Q Consensus 138 PVIgVP~~~ 146 (202)
|. +++.+
T Consensus 145 ~~--v~i~s 151 (176)
T PF06506_consen 145 PG--VLIES 151 (176)
T ss_dssp EE--EESS-
T ss_pred cE--EEEEe
Confidence 64 44443
No 485
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=35.68 E-value=76 Score=20.96 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEcc
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPP 95 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~Sa 95 (202)
+.+.++...|++.|++|+......
T Consensus 10 ~~~~~v~~~l~~~~~~~~~~~i~~ 33 (73)
T cd03056 10 GNCYKVRLLLALLGIPYEWVEVDI 33 (73)
T ss_pred ccHHHHHHHHHHcCCCcEEEEecC
Confidence 567889999999999999877654
No 486
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.54 E-value=2.2e+02 Score=24.29 Aligned_cols=26 Identities=8% Similarity=0.004 Sum_probs=15.4
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCC
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGV 86 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi 86 (202)
+++++|+|+++-+ ....++.|-+-|.
T Consensus 6 ~k~vlVTGas~gI--G~ala~~La~~G~ 31 (275)
T PRK05876 6 GRGAVITGGASGI--GLATGTEFARRGA 31 (275)
T ss_pred CCEEEEeCCCchH--HHHHHHHHHHCCC
Confidence 4577788877644 4445555555553
No 487
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=35.53 E-value=2.8e+02 Score=25.63 Aligned_cols=50 Identities=26% Similarity=0.266 Sum_probs=33.5
Q ss_pred cCCCCHH-HHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEE
Q 028883 66 ESDLDLP-VMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 66 GS~SD~~-v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa 119 (202)
+++.|+. ..+....+.+.+++|.-++..+.--+ .+.++.+++.|++.|++
T Consensus 166 ~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s----~~~a~~l~~~Gvd~I~V 216 (352)
T PRK05437 166 EGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGIS----KETAKRLADAGVKAIDV 216 (352)
T ss_pred CCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCc----HHHHHHHHHcCCCEEEE
Confidence 4566776 45666677777899999888764333 34455555678887666
No 488
>PRK14467 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=35.51 E-value=2.1e+02 Score=26.66 Aligned_cols=61 Identities=8% Similarity=0.083 Sum_probs=47.0
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCC---------chHHHHHHHHHhhcCceEEEEe
Q 028883 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQN---------CKEALSYALSAKERGIKIIIVG 120 (202)
Q Consensus 60 ~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRt---------p~~l~~~~~~~~~~g~~ViIa~ 120 (202)
...+|=|=..+.+.+++.++.|+.++..+.+.++-.|.. .+++.++.+.+++.|+.|.|=-
T Consensus 256 eyvLIpGvNDs~e~a~~La~~l~~l~~~~~VnLIPynp~~~~~~~~ps~e~i~~f~~~L~~~gi~v~vR~ 325 (348)
T PRK14467 256 EYVLIKGVNDSPEDALRLAQLIGKNKKKFKVNLIPFNPDPELPYERPELERVYKFQKILWDNGISTFVRW 325 (348)
T ss_pred EEEEECCccCCHHHHHHHHHHHhcCCCceEEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEeC
Confidence 356677878888899999999998865578888888863 3567777777778788877753
No 489
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.49 E-value=2.1e+02 Score=23.63 Aligned_cols=40 Identities=13% Similarity=0.179 Sum_probs=23.1
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHH
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALS 104 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~ 104 (202)
.+..+|+|+++.+ ....++.|-+.|. +|+..+|.++++++
T Consensus 12 ~k~ilItGa~g~I--G~~la~~l~~~G~----~V~~~~r~~~~~~~ 51 (259)
T PRK08213 12 GKTALVTGGSRGL--GLQIAEALGEAGA----RVVLSARKAEELEE 51 (259)
T ss_pred CCEEEEECCCchH--HHHHHHHHHHcCC----EEEEEeCCHHHHHH
Confidence 3577888887754 4556666655564 23444555554433
No 490
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=35.33 E-value=1.4e+02 Score=26.22 Aligned_cols=93 Identities=9% Similarity=0.067 Sum_probs=52.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeE----EEE----EccCCCchHHHHHHHHHhhcCce-EEEEecCC-cCchh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYE----IKI----LPPHQNCKEALSYALSAKERGIK-IIIVGDGV-EAHLS 128 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~e----v~V----~SaHRtp~~l~~~~~~~~~~g~~-ViIa~AG~-aa~Lp 128 (202)
.+|+|++= =.-++-+...+.|++.|+++. +++ .=++-.|+.+.+.+++....+.+ |||.|.++ ...+-
T Consensus 121 ~RIalvTP--Y~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCTnLrt~~vi 198 (239)
T TIGR02990 121 RRISLLTP--YTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCTALRAATCA 198 (239)
T ss_pred CEEEEECC--CcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCCCchhHHHH
Confidence 57777764 333445566677777777532 122 12456788888888777555554 77777766 23333
Q ss_pred hhhhhccCCcEEEecCCCCCCChhhHHHhhcC
Q 028883 129 GVAAANSQILVIRVPLLSEDWSEDDVINSIRM 160 (202)
Q Consensus 129 gvvA~~T~~PVIgVP~~~~~l~G~DLlS~vqM 160 (202)
.-+=....+|||. ++ -..+|.+|++
T Consensus 199 ~~lE~~lGkPVls-----SN--qat~W~~Lr~ 223 (239)
T TIGR02990 199 QRIEQAIGKPVVT-----SN--QATAWRCLRL 223 (239)
T ss_pred HHHHHHHCCCEEE-----HH--HHHHHHHHHH
Confidence 3333445666663 21 1226667665
No 491
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=35.24 E-value=1e+02 Score=28.47 Aligned_cols=89 Identities=11% Similarity=-0.021 Sum_probs=59.9
Q ss_pred CCeEEEEecCCCCHHHHHHHHHHH--HHh--CCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcCchhh-hhh
Q 028883 58 APIVGIIMESDLDLPVMNDAARTL--SDF--GVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSG-VAA 132 (202)
Q Consensus 58 ~~~V~IimGS~SD~~v~~~a~~~L--~~~--gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg-vvA 132 (202)
..+|+.|-|=....-......=.+ ++. .+.+++..++-+-.|++-.+.+..+.+.|++||.-.||..+-+-= .+.
T Consensus 161 ~~~vG~vgg~~~p~v~~f~~gF~~Gak~~np~i~v~v~~~gsf~D~~k~k~~a~~li~~GaDVI~~~ag~~~~gv~~~A~ 240 (345)
T COG1744 161 SGKVGFVGGMDIPEVNRFINGFLAGAKSVNPDIKVKVVYVGSFSDPAKGKEAANALIDQGADVIYPAAGGTGVGVFQAAK 240 (345)
T ss_pred CCceeEEecccchhhHHHHHHHHHHHHhhCCCccEEEEEecCccChHHHHHHHHHHHhcCCCEEEecCCCCcchHHHHHH
Confidence 467888877654433322222111 122 245778889999999999999999999999999999998876543 344
Q ss_pred hccCCcEEEecCCCC
Q 028883 133 ANSQILVIRVPLLSE 147 (202)
Q Consensus 133 ~~T~~PVIgVP~~~~ 147 (202)
.+.... ||+=..-.
T Consensus 241 ~~~~~~-iGvdsDQ~ 254 (345)
T COG1744 241 ELGAYA-IGVDSDQS 254 (345)
T ss_pred HhCCCe-EEEecccc
Confidence 455555 88866543
No 492
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=35.20 E-value=85 Score=26.49 Aligned_cols=45 Identities=13% Similarity=0.121 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCeEEEEEccCCCchH-------HHHHHHHHhhcCceEEEE
Q 028883 72 PVMNDAARTLSDFGVPYEIKILPPHQNCKE-------ALSYALSAKERGIKIIIV 119 (202)
Q Consensus 72 ~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~-------l~~~~~~~~~~g~~ViIa 119 (202)
+.+++..+.|++ .+|+-|++.|=..+. ..++++.+...|+++||.
T Consensus 162 ~~~~~~i~~lr~---~~D~vIv~~H~G~e~~~~p~~~~~~la~~l~~~G~D~IiG 213 (239)
T cd07381 162 ERIAADIAEAKK---KADIVIVSLHWGVEYSYYPTPEQRELARALIDAGADLVIG 213 (239)
T ss_pred HHHHHHHHHHhh---cCCEEEEEecCcccCCCCCCHHHHHHHHHHHHCCCCEEEc
Confidence 344444444444 489999999975533 567777776778999883
No 493
>TIGR00442 hisS histidyl-tRNA synthetase. This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.
Probab=35.19 E-value=1.2e+02 Score=27.64 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=42.4
Q ss_pred CCCeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEec
Q 028883 57 DAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGD 121 (202)
Q Consensus 57 ~~~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~A 121 (202)
.+..|.|+.-+..++..+.+.+..|.+.|+.+++...+ +..++- .+.+.+.|++-+|.+.
T Consensus 321 ~~~~vlV~~~~~~~~~~~~~i~~~Lr~~gi~v~~~~~~--~~l~k~---~~~a~~~g~~~~i~ig 380 (397)
T TIGR00442 321 SSPDVYVVPLGEEAELEALKLAQKLRKAGIRVEVDLGG--RKLKKQ---LKYADKLGARFAVILG 380 (397)
T ss_pred CCCcEEEEEeCHHHHHHHHHHHHHHHhCCCeEEEeCCC--CCHHHH---HHHHHHcCCCEEEEEC
Confidence 34578888767888889999999999999998875432 444444 4445567786555554
No 494
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=35.19 E-value=2.4e+02 Score=22.65 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=50.9
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEc---cCCCchHHHHHHHHH-hhcCceEEEEecCC-cCchhhhhhh
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP---PHQNCKEALSYALSA-KERGIKIIIVGDGV-EAHLSGVAAA 133 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~S---aHRtp~~l~~~~~~~-~~~g~~ViIa~AG~-aa~LpgvvA~ 133 (202)
..+++++|...|.. .+.|..+|..--+.+.. .+..|+...+.+.++ ++.+.++|+..+-. ...|++.+|+
T Consensus 30 ~v~~v~~G~~~~~~-----~~~~~~~Gad~v~~~~~~~~~~~~~~~~a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa 104 (168)
T cd01715 30 EVTALVIGSGAEAV-----AAALKAYGADKVLVAEDPALAHYLAEPYAPALVALAKKEKPSHILAGATSFGKDLAPRVAA 104 (168)
T ss_pred CEEEEEECCChHHH-----HHHHHhcCCCEEEEecChhhcccChHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHH
Confidence 36788888875542 33345789874444432 345677777766655 34456777766554 4589999999
Q ss_pred ccCCcEEE
Q 028883 134 NSQILVIR 141 (202)
Q Consensus 134 ~T~~PVIg 141 (202)
....|++.
T Consensus 105 ~L~~~~vt 112 (168)
T cd01715 105 KLDVGLIS 112 (168)
T ss_pred HhCCCcee
Confidence 99888764
No 495
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=35.09 E-value=55 Score=32.96 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=33.4
Q ss_pred CchHHHHHHHHHhhcCceEEEEecCCcCc-hhhhhhh-----ccCCcEEEecCCC
Q 028883 98 NCKEALSYALSAKERGIKIIIVGDGVEAH-LSGVAAA-----NSQILVIRVPLLS 146 (202)
Q Consensus 98 tp~~l~~~~~~~~~~g~~ViIa~AG~aa~-LpgvvA~-----~T~~PVIgVP~~~ 146 (202)
+++...+..+..++.+++.+|.+.|-... -+-.++- ....||||||-.-
T Consensus 158 ~~e~~~~i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTI 212 (610)
T PLN03028 158 TTEQVNAALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTL 212 (610)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceee
Confidence 34667788888888889877777665332 2223332 3489999999763
No 496
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=35.05 E-value=1.6e+02 Score=26.35 Aligned_cols=66 Identities=14% Similarity=0.044 Sum_probs=50.6
Q ss_pred eEEEEecC-CCCHHHHHHHHHHHH-HhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEEecCCcC
Q 028883 60 IVGIIMES-DLDLPVMNDAARTLS-DFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEA 125 (202)
Q Consensus 60 ~V~IimGS-~SD~~v~~~a~~~L~-~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa 125 (202)
.|.|--|. .|+..-.-+++..|+ ++|++.-.+++.-.|+...+.+++..+...|++=|.+..|-..
T Consensus 32 fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p 99 (281)
T TIGR00677 32 FIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPP 99 (281)
T ss_pred EEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 46666554 455555555555554 7899999999999999999999999999999987777777553
No 497
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=34.99 E-value=91 Score=23.92 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCeEEEEEccCCCchHHHHHHHHHhhcCceEEEE
Q 028883 74 MNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119 (202)
Q Consensus 74 ~~~a~~~L~~~gi~~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa 119 (202)
.++..+.+++.++. ++-|+-.....+++.++++++++.+++|-++
T Consensus 130 ~~~l~~~~~~~~id-~v~ial~~~~~~~i~~ii~~~~~~~v~v~~v 174 (175)
T PF13727_consen 130 LDDLPELVREHDID-EVIIALPWSEEEQIKRIIEELENHGVRVRVV 174 (175)
T ss_dssp GGGHHHHHHHHT---EEEE--TTS-HHHHHHHHHHHHTTT-EEEE-
T ss_pred HHHHHHHHHhCCCC-EEEEEcCccCHHHHHHHHHHHHhCCCEEEEe
Confidence 34556677778877 7777777777888888999888888887653
No 498
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=34.98 E-value=1.1e+02 Score=26.77 Aligned_cols=65 Identities=14% Similarity=0.196 Sum_probs=51.1
Q ss_pred HHHhCCCeEEEEEc----cCCCchHHHHHHHHHhhcCceEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883 81 LSDFGVPYEIKILP----PHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 81 L~~~gi~~ev~V~S----aHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
+++||+.. +.+.+ .=-+|.++.++++..+++++++|+.=......+.-.+|-.+..||+.+++.+
T Consensus 185 ~~~~gl~~-~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~~ld~l~ 253 (282)
T cd01017 185 ARRYGLKQ-IAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETLAKETGAKLLVLNPLE 253 (282)
T ss_pred HHHCCCeE-EecccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCcEEEecccc
Confidence 35688873 33332 2346788999999999999999999999999999999999999998776543
No 499
>PRK00865 glutamate racemase; Provisional
Probab=34.98 E-value=51 Score=28.85 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=50.3
Q ss_pred CeEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEEcc-----CCCchHHHHHH----HHHhhcCce-EEEEecCCcC-ch
Q 028883 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPP-----HQNCKEALSYA----LSAKERGIK-IIIVGDGVEA-HL 127 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~a~~~L~~~gi~~ev~V~Sa-----HRtp~~l~~~~----~~~~~~g~~-ViIa~AG~aa-~L 127 (202)
..|+|+=.|--=+.+.+++.+.|-...+=| ---.+ -|+++.+.++. +.+++.|++ ++|+|-..++ +|
T Consensus 6 ~~IgvfDSGiGGLtvl~~i~~~lp~~~~iY--~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l 83 (261)
T PRK00865 6 APIGVFDSGVGGLTVLREIRRLLPDEHIIY--VGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVAL 83 (261)
T ss_pred CeEEEEECCccHHHHHHHHHHHCCCCCEEE--EecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHH
Confidence 469999888888999999998884433321 11111 25666655544 556778887 4444444433 33
Q ss_pred hhhhhhccCCcEEEe
Q 028883 128 SGVAAANSQILVIRV 142 (202)
Q Consensus 128 pgvvA~~T~~PVIgV 142 (202)
. -+-....+||||+
T Consensus 84 ~-~lr~~~~iPvigi 97 (261)
T PRK00865 84 P-DLRERYDIPVVGI 97 (261)
T ss_pred H-HHHHhCCCCEEee
Confidence 3 4445678999994
No 500
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=34.96 E-value=52 Score=31.01 Aligned_cols=87 Identities=22% Similarity=0.172 Sum_probs=60.4
Q ss_pred CeEEEEecCCCCHHHHHH----HHHHHHHhCCCeEEE-------------EEc-cCCCch----------HHHHHHHHHh
Q 028883 59 PIVGIIMESDLDLPVMND----AARTLSDFGVPYEIK-------------ILP-PHQNCK----------EALSYALSAK 110 (202)
Q Consensus 59 ~~V~IimGS~SD~~v~~~----a~~~L~~~gi~~ev~-------------V~S-aHRtp~----------~l~~~~~~~~ 110 (202)
.-|+|...++-|.-+-.. |...|++ ||..-+- .-| .|...+ +...++.-++
T Consensus 92 rp~~IhLagTGDh~f~rR~~l~a~pLl~~-gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~Wl~ 170 (348)
T PF09752_consen 92 RPVCIHLAGTGDHGFWRRRRLMARPLLKE-GIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLHWLE 170 (348)
T ss_pred CceEEEecCCCccchhhhhhhhhhHHHHc-CcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHHHHH
Confidence 458889999999766553 5556677 8852211 111 222222 2233444455
Q ss_pred hcCc-eEEEEecCCcCchhhhhhhccCCcEEEecCCC
Q 028883 111 ERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLS 146 (202)
Q Consensus 111 ~~g~-~ViIa~AG~aa~LpgvvA~~T~~PVIgVP~~~ 146 (202)
.+|+ .+-|++--|-++.++++|++-+.||--||+-+
T Consensus 171 ~~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ls 207 (348)
T PF09752_consen 171 REGYGPLGLTGISMGGHMAALAASNWPRPVALVPCLS 207 (348)
T ss_pred hcCCCceEEEEechhHhhHHhhhhcCCCceeEEEeec
Confidence 6677 79999999999999999999999999999975
Done!