RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028883
(202 letters)
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; 1.77A {Thermotoga maritima}
SCOP: c.23.8.1
Length = 183
Score = 149 bits (378), Expect = 5e-46
Identities = 64/156 (41%), Positives = 92/156 (58%), Gaps = 1/156 (0%)
Query: 48 EENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107
+ + P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA
Sbjct: 3 SDKIHHHHHHVPRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAK 62
Query: 108 SAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQV 166
+A+ERGI++II G G AHL G+ A+ + + VI VP+ + + D + SI +MP V V
Sbjct: 63 NAEERGIEVIIAGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPV 122
Query: 167 ASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202
A+V NNAKNA + A +LGI ++ ++++Y E
Sbjct: 123 ATVAINNAKNAGILAASILGIKYPEIARKVKEYKER 158
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta
protein, structural genomics, PSI-2, protein initiative;
1.70A {Mycobacterium tuberculosis}
Length = 174
Score = 145 bits (369), Expect = 8e-45
Identities = 60/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
Query: 54 DSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERG 113
+ + P VG+IM SD D PVM DAA L++F +P E++++ H+ + SYA A RG
Sbjct: 3 PAGERPRVGVIMGSDSDWPVMADAAAALAEFDIPAEVRVVSAHRTPEAMFSYARGAAARG 62
Query: 114 IKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRN 172
+++II G G AHL G+ AA + + VI VP+ D + SI +MP+ V VA+V
Sbjct: 63 LEVIIAGAGGAAHLPGMVAAATPLPVIGVPVPLGRLDGLDSLLSIVQMPAGVPVATVSIG 122
Query: 173 NAKNAALYAVKVLGIADEDLLERIRKYVEE 202
A NA L AV++LG A+ L RI + +
Sbjct: 123 GAGNAGLLAVRMLGAANPQLRARIVAFQDR 152
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine
biosynthesis, lyase; 1.74A {Treponema denticola} PDB:
3rgg_A*
Length = 159
Score = 140 bits (354), Expect = 1e-42
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 3/145 (2%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKER-GIKII 117
P+V I+M S D+ A L FG+ Y I+I H+ + +S + K+
Sbjct: 3 PLVIILMGSSSDMGHAEKIASELKTFGIEYAIRIGSAHKTAEHVVSMLKEYEALDRPKLY 62
Query: 118 IVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNA 177
I G LSG + I P S+ ++ D+ +S+RMPS + A V KNA
Sbjct: 63 ITIAGRSNALSGFVDGFVKGATIACPPPSDSFAGADIYSSLRMPSGISPALV--LEPKNA 120
Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
AL A ++ + D+++ + ++ Y+E
Sbjct: 121 ALLAARIFSLYDKEIADSVKSYMES 145
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase
subunit; purines, pyrimidines, nucleosides, nucleotides,
lyase; 2.20A {Coxiella burnetii}
Length = 169
Score = 131 bits (333), Expect = 2e-39
Identities = 47/151 (31%), Positives = 75/151 (49%), Gaps = 3/151 (1%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ + V I+M SD DL M A L G+P+E IL H+ KE + + +A RG
Sbjct: 3 AMNKIFVAILMGSDSDLSTMETAFTELKSLGIPFEAHILSAHRTPKETVEFVENADNRGC 62
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 173
+ I G+ AHL+G AA++ VI VP+ D + S +MP V VA
Sbjct: 63 AVFIAAAGLAAHLAGTIAAHTLKPVIGVPMAGGSLGGLDALLSTVQMPGGVPVACTAIGK 122
Query: 174 --AKNAALYAVKVLGIADEDLLERIRKYVEE 202
AKNAA+ A +++ + D+ + +++ +
Sbjct: 123 AGAKNAAILAAQIIALQDKSIAQKLVQQRTA 153
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase,
isomerase,biosynthetic protein; 1.45A {Staphylococcus
aureus subsp}
Length = 163
Score = 131 bits (332), Expect = 2e-39
Identities = 51/147 (34%), Positives = 84/147 (57%), Gaps = 3/147 (2%)
Query: 56 TDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIK 115
++A V +IM S D +M ++ L F +PYE +++ H+ K + +A A+ERGI
Sbjct: 1 SNAMKVAVIMGSSSDWKIMQESCNMLDYFEIPYEKQVVSAHRTPKMMVQFASEARERGIN 60
Query: 116 IIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--RN 172
III G G AHL G+ A+ + + VI VP+ ++ D + SI +MP + VA+
Sbjct: 61 IIIAGAGGAAHLPGMVASLTTLPVIGVPIETKSLKGIDSLLSIVQMPGGIPVATTAIGAA 120
Query: 173 NAKNAALYAVKVLGIADEDLLERIRKY 199
AKNA + A ++L I + L+E++ +Y
Sbjct: 121 GAKNAGILAARMLSIQNPSLVEKLNQY 147
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A
{Bacillus anthracis}
Length = 181
Score = 130 bits (329), Expect = 9e-39
Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 3/148 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
S +VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+
Sbjct: 19 SHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGL 78
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVPRNN 173
K+II G G AHL G+ AA + + VI VP+ S+ + D + SI +MP V VA+V
Sbjct: 79 KVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGK 138
Query: 174 --AKNAALYAVKVLGIADEDLLERIRKY 199
+ NA L A ++LG +D+ + +
Sbjct: 139 AGSTNAGLLAAQILGSFHDDIHDALELR 166
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine
biosynthesis, spine, lyase; 1.80A {Bacillus anthracis}
SCOP: c.23.8.1
Length = 170
Score = 129 bits (327), Expect = 1e-38
Identities = 52/153 (33%), Positives = 81/153 (52%), Gaps = 3/153 (1%)
Query: 50 NPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109
+ + +VG+IM S D M A L + +PYE K++ H+ YA +A
Sbjct: 3 SHHHHHHMKSLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETA 62
Query: 110 KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVAS 168
+ERG+K+II G G AHL G+ AA + + VI VP+ S+ + D + SI +MP V VA+
Sbjct: 63 RERGLKVIIAGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVAT 122
Query: 169 VPRNN--AKNAALYAVKVLGIADEDLLERIRKY 199
V + NA L A ++LG +D+ + +
Sbjct: 123 VAIGKAGSTNAGLLAAQILGSFHDDIHDALELR 155
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold,
structural genomics, NPPSFA; 2.31A {Methanocaldococcus
jannaschii}
Length = 157
Score = 129 bits (326), Expect = 2e-38
Identities = 42/143 (29%), Positives = 83/143 (58%), Gaps = 3/143 (2%)
Query: 60 IVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIIIV 119
++ IIM S+ DL + A L +FGV +E+++ H+ + ++K + I
Sbjct: 1 MICIIMGSESDLKIAEKAVNILKEFGVEFEVRVASAHRTPELVEEIVKNSKA---DVFIA 57
Query: 120 GDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAAL 179
G+ AHL GV A+ + VI VP+ ++ D +++S++MP + VA+V + +NAA+
Sbjct: 58 IAGLAAHLPGVVASLTTKPVIAVPVDAKLDGLDALLSSVQMPPGIPVATVGIDRGENAAI 117
Query: 180 YAVKVLGIADEDLLERIRKYVEE 202
A+++L + DE++ +++ +Y E+
Sbjct: 118 LALEILALKDENIAKKLIEYREK 140
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural
genomics, center for structural genomics of infec
diseases, csgid; HET: MSE; 1.75A {Francisella tularensis
subsp} PDB: 3opq_A*
Length = 166
Score = 127 bits (322), Expect = 7e-38
Identities = 50/148 (33%), Positives = 83/148 (56%), Gaps = 3/148 (2%)
Query: 55 STDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGI 114
+ + VG+IM S D M + L + G+ YE +++ H+ + YA +AKERG+
Sbjct: 2 NAMSVQVGVIMGSKSDWSTMKECCDILDNLGIGYECEVVSAHRTPDKMFDYAETAKERGL 61
Query: 115 KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVASVP--R 171
K+II G G AHL G+ AA + + V+ VP+ S + D + SI +MP+ + VA+
Sbjct: 62 KVIIAGAGGAAHLPGMVAAKTTLPVLGVPVKSSTLNGQDSLLSIVQMPAGIPVATFAIGM 121
Query: 172 NNAKNAALYAVKVLGIADEDLLERIRKY 199
AKNAAL+A +L D ++ + + ++
Sbjct: 122 AGAKNAALFAASILQHTDINIAKALAEF 149
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer
(ABA) sandwich, rossmann fold, csgid, lyase, structu
genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A
2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Length = 174
Score = 127 bits (321), Expect = 1e-37
Identities = 48/153 (31%), Positives = 79/153 (51%), Gaps = 3/153 (1%)
Query: 50 NPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSA 109
N N + I+M S D M AA L+ VP+ ++++ H+ S+A A
Sbjct: 4 NLNSAYAAGVKIAIVMGSKSDWATMQFAADVLTTLNVPFHVEVVSAHRTPDRLFSFAEQA 63
Query: 110 KERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQVAS 168
+ G+ +II G+G AHL G+ AA + + V+ VP+ S S D + SI +MP + V +
Sbjct: 64 EANGLHVIIAGNGGAAHLPGMLAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGT 123
Query: 169 VP--RNNAKNAALYAVKVLGIADEDLLERIRKY 199
+ + A NAAL A ++L + D +L R+ +
Sbjct: 124 LAIGKAGAANAALLAAQILALHDTELAGRLAHW 156
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle,
protein stability, lyase; HET: CIT; 1.55A {Acetobacter
aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A
2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Length = 182
Score = 127 bits (321), Expect = 1e-37
Identities = 53/155 (34%), Positives = 80/155 (51%), Gaps = 3/155 (1%)
Query: 48 EENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYAL 107
+ AP+VGIIM S D M A L++ +P+E I+ H+ YA
Sbjct: 11 SSALEDKAASAPVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYAR 70
Query: 108 SAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSI-RMPSHVQV 166
+A ERG+ +II G G AHL G+ AA +++ V+ VP+ S D + SI +MP V V
Sbjct: 71 TAAERGLNVIIAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPV 130
Query: 167 ASVP--RNNAKNAALYAVKVLGIADEDLLERIRKY 199
++ + AKNAAL A +L + + L R+ +
Sbjct: 131 GTLAIGASGAKNAALLAASILALYNPALAARLETW 165
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase;
2.80A {Homo sapiens}
Length = 425
Score = 123 bits (309), Expect = 1e-33
Identities = 38/160 (23%), Positives = 72/160 (45%), Gaps = 3/160 (1%)
Query: 44 TVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEAL 103
V E S V ++M S DL + +FG+P E+++ H+ E L
Sbjct: 251 WVAERVELLLKSESQCRVVVLMGSTSDLGHCEKIKKACGNFGIPCELRVTSAHKGPDETL 310
Query: 104 SYALSAKERGI-KIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPS 162
+ GI + + G L V + N+ VI P L+ DW DV +S+R+PS
Sbjct: 311 RIKAEYEGDGIPTVFVAVAGRSNGLGPVMSGNTAYPVISCPPLTPDWGVQDVWSSLRLPS 370
Query: 163 HVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRKYVEE 202
+ ++V + + +A +A ++ G+++ + ++R +
Sbjct: 371 GLGCSTV--LSPEGSAQFAAQIFGLSNHLVWSKLRASILN 408
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.5 bits (89), Expect = 0.001
Identities = 29/144 (20%), Positives = 50/144 (34%), Gaps = 39/144 (27%)
Query: 3 NNSKRPNSVRTVSRGT--IPVLA---SS-NGSATSRRKDD----------SSVREPSTVF 46
+ S+ P S R + +PV + S A+ D ++ P V+
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIP--VY 460
Query: 47 EEENPNGD--STDAPIVGIIMESDLDLPV-----MNDAARTLSDFGVPYEIKILPP--HQ 97
+ + D I I++ + LPV A + DFG P L H+
Sbjct: 461 DTFD-GSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFG-PGGASGLGVLTHR 518
Query: 98 NCKEALSYALSAKERGIKIIIVGD 121
N K+ G+++I+ G
Sbjct: 519 N-KDG---------TGVRVIVAGT 532
Score = 35.0 bits (80), Expect = 0.014
Identities = 16/114 (14%), Positives = 40/114 (35%), Gaps = 27/114 (23%)
Query: 105 YALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLLSEDWSE--DDVINSIRM-- 160
Y ++AK G G+ + ++L G + ++ ++ W V +I +
Sbjct: 249 YVVTAKLLGFT---PGE-LRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF 304
Query: 161 ----------------PSHVQVASVPRNNAKNAALYAVKVLGIADEDLLERIRK 198
PS ++ S+ N + + ++ + E + + + K
Sbjct: 305 FIGVRCYEAYPNTSLPPSILE-DSLENNEGVPSPMLSIS--NLTQEQVQDYVNK 355
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.40
Identities = 18/140 (12%), Positives = 40/140 (28%), Gaps = 49/140 (35%)
Query: 86 VPYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLSGVAAANSQILVIRVPLL 145
Y + L P+ ++AL + R K +++ GV + + + V L
Sbjct: 127 AKYNVSRLQPYLKLRQALL-----ELRPAKNVLI------D--GVLGSGKTWVALDV-CL 172
Query: 146 SED----------W-------SEDDVINSIR------MPSHVQVASVPRNNAKNAALYAV 182
S W S + V+ ++ P+ + N
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----- 227
Query: 183 KVLGIADEDLLERIRKYVEE 202
+ +R+ ++
Sbjct: 228 -------HSIQAELRRLLKS 240
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 27.5 bits (62), Expect = 3.1
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 174 AKNAALYAVKVLG 186
AK L+ VKVL
Sbjct: 85 AKKTQLFGVKVLD 97
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic
amino acid biosynthesis, open form, form B, domain
movement, cyclase; HET: NAD; 2.20A {Staphylococcus
aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Length = 354
Score = 27.6 bits (62), Expect = 3.2
Identities = 26/83 (31%), Positives = 33/83 (39%), Gaps = 13/83 (15%)
Query: 79 RTLSDFGVPYEIKILPPHQNCK------EALSYALSAK-ERGIKIIIVGDGVEAHLSGVA 131
LS V I+P + K E L Y LS R II VG G +G
Sbjct: 52 DILSYENV--HKVIIPAGEKTKTFEQYQETLEYILSHHVTRNTAIIAVGGGATGDFAGFV 109
Query: 132 AANSQ--ILVIRVP--LLSEDWS 150
AA + I+VP +L+ D S
Sbjct: 110 AATLLRGVHFIQVPTTILAHDSS 132
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 27.6 bits (61), Expect = 3.3
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 174 AKNAALYAVKVLG 186
AK A++ +++VL
Sbjct: 90 AKGASMRSLRVLN 102
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 27.2 bits (61), Expect = 3.6
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 174 AKNAALYAVKVLG 186
AK +++ VKVL
Sbjct: 86 AKKVSIFGVKVLD 98
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 27.3 bits (60), Expect = 3.9
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 174 AKNAALYAVKVLG 186
AK A++ +++VL
Sbjct: 242 AKGASMRSLRVLN 254
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 26.8 bits (60), Expect = 4.4
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 174 AKNAALYAVKVLG 186
AKN + V+VL
Sbjct: 88 AKNVNVVGVRVLN 100
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 26.8 bits (60), Expect = 4.5
Identities = 6/13 (46%), Positives = 8/13 (61%)
Query: 174 AKNAALYAVKVLG 186
AKN + V+VL
Sbjct: 86 AKNVNIVGVRVLS 98
>4aee_A Alpha amylase, catalytic region; hydrolase, hyperthermostable,
cyclodextrin hydrolase, GH13; 2.28A {Staphylothermus
marinus}
Length = 696
Score = 27.0 bits (60), Expect = 4.8
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 2/15 (13%)
Query: 109 AKERGIKIIIVGDGV 123
R IKI++ D
Sbjct: 321 LHSRKIKIVL--DIT 333
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 26.8 bits (60), Expect = 5.6
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 174 AKNAALYAVKVLG 186
AK LYAV+VL
Sbjct: 86 AKAVNLYAVRVLD 98
>1f1j_A Caspase-7 protease; caspase-7, cysteine protease, hydrolase,
apoptosis, hydrolas hydrolase inhibitor complex; 2.35A
{Homo sapiens} SCOP: c.17.1.1 PDB: 1kmc_A 3r5k_A 1i4o_A
1gqf_A 3h1p_A 1shj_A* 1k86_A 1k88_A 1shl_A*
Length = 305
Score = 26.3 bits (57), Expect = 6.4
Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 13/84 (15%)
Query: 35 DDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILP 94
DD E V E++ N DS DA + S ++ +
Sbjct: 5 DDQGCIEEQGV--EDSANEDSVDAKP-----------DRSSFVPSLFSKKKKNVTMRSIK 51
Query: 95 PHQNCKEALSYALSAKERGIKIII 118
++ Y ++ ++ G III
Sbjct: 52 TTRDRVPTYQYNMNFEKLGKCIII 75
>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics,
PSI, structure initiative; 1.63A {Escherichia coli}
SCOP: c.1.15.5
Length = 260
Score = 26.0 bits (57), Expect = 7.4
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 5/27 (18%)
Query: 151 EDDVINSIR--MP--SHVQVASVP-RN 172
+ ++ + IR +HVQ+A +P R+
Sbjct: 186 DGNLTHLIRDYAGKYAHVQIAGLPDRH 212
>2wc7_A Alpha amylase, catalytic region; CD/PUL-hydrolyzing enzymes,
hydrolase, glycosidase, neopullu; 2.37A {Nostoc
punctiforme} PDB: 2wcs_A 2wkg_A
Length = 488
Score = 26.2 bits (58), Expect = 7.9
Identities = 7/15 (46%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 109 AKERGIKIIIVGDGV 123
A +R IK+++ DGV
Sbjct: 112 AHQRNIKVVL--DGV 124
>3b8z_A Protein adamts-5; alpha/beta, hydrolase; HET: 294; 1.40A {Homo
sapiens} PDB: 3hyg_A* 3hy9_A* 3hy7_A* 3ljt_A*
Length = 217
Score = 25.9 bits (57), Expect = 8.1
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 60 IVGIIM--ESDLDLPVMNDAARTLSDFG 85
+V +++ + D L V +AA TL +F
Sbjct: 52 VVKVVVLGDKDKSLEVSKNAATTLKNFC 79
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Length = 186
Score = 25.9 bits (57), Expect = 8.3
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 109 AKERGIKIIIVGDG 122
+ IK ++VGDG
Sbjct: 1 GSPQAIKCVVVGDG 14
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, TIM
barrel; 1.80A {Brucella melitensis biovar abortus}
Length = 269
Score = 26.0 bits (57), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 5/27 (18%)
Query: 151 EDDVINSIR--MP--SHVQVASVP-RN 172
+ D+ I SHVQ+ASVP R+
Sbjct: 193 DGDLTRLIEKMNGAFSHVQIASVPDRH 219
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 26.1 bits (58), Expect = 8.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 174 AKNAALYAVKVLG 186
A +A L+A KVL
Sbjct: 94 APDADLWAYKVLL 106
>3qac_A 11S globulin SEED storage protein; 11S SEED storage protein
(globulins) family, SEED storage PR plant protein; 2.27A
{Amaranthus hypochondriacus}
Length = 465
Score = 26.0 bits (56), Expect = 9.2
Identities = 21/138 (15%), Positives = 51/138 (36%), Gaps = 17/138 (12%)
Query: 10 SVRTVSRGTIPVLASSNGSATSRRKDDSSVREPSTVFEEENPNGDSTDAPIVGIIMESDL 69
+ TV+ +P+L SA +++ P N N + + +
Sbjct: 306 RLTTVNSFNLPILRHLRLSAAKGVLYRNAMMAPHY-----NLNAHN-----IMYCVRGRG 355
Query: 70 DLPVMNDAARTLSDFGV-PYEIKILPPHQNCKEALSYALSAKERGIKIIIVGDGVEAHLS 128
+ ++ND +++ D + ++ ++P + + A E G + + A
Sbjct: 356 RIQIVNDQGQSVFDEELSRGQLVVVPQN------FAIVKQAFEDGFEWVSFKTSENAMFQ 409
Query: 129 GVAAANSQILVIRVPLLS 146
+A S I + + ++S
Sbjct: 410 SLAGRTSAIRSLPIDVVS 427
>2dh2_A 4F2 cell-surface antigen heavy chain; TIM-barrel, glycosidase like,
antiparallel beta-sheet, greek terminal domain,
extracellular domain; 2.10A {Homo sapiens} PDB: 2dh3_A
Length = 424
Score = 25.9 bits (57), Expect = 9.9
Identities = 5/20 (25%), Positives = 11/20 (55%), Gaps = 2/20 (10%)
Query: 109 AKERGIKIIIVGDGVEAHLS 128
AK++ I++I+ D +
Sbjct: 91 AKKKSIRVIL--DLTPNYRG 108
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.130 0.359
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,094,017
Number of extensions: 187398
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 57
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (24.8 bits)