RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 028883
(202 letters)
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 118 bits (297), Expect = 2e-34
Identities = 62/145 (42%), Positives = 90/145 (62%), Gaps = 1/145 (0%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
P VGIIM SD DLPVM AA L +FG+ YEI I+ H+ YA +A+ERGI++II
Sbjct: 1 PRVGIIMGSDSDLPVMKQAAEILEEFGIDYEITIVSAHRTPDRMFEYAKNAEERGIEVII 60
Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWS-EDDVINSIRMPSHVQVASVPRNNAKNA 177
G G AHL G+ A+ + + VI VP+ + + D + + ++MP V VA+V NNAKNA
Sbjct: 61 AGAGGAAHLPGMVASITHLPVIGVPVKTSTLNGLDSLFSIVQMPGGVPVATVAINNAKNA 120
Query: 178 ALYAVKVLGIADEDLLERIRKYVEE 202
+ A +LGI ++ ++++Y E
Sbjct: 121 GILAASILGIKYPEIARKVKEYKER 145
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Length = 163
Score = 117 bits (294), Expect = 3e-34
Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 3/147 (2%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
V I+M S D M AA VP+ ++++ H+ + S+A SA+E G ++II
Sbjct: 2 ARVAIVMGSKSDWATMQFAAEIFEILNVPHHVEVVSAHRTPDKLFSFAESAEENGYQVII 61
Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDD---VINSIRMPSHVQVASVPRNNAK 175
G G AHL G+ AA + + V+ VP+ S S D I + V ++ + A
Sbjct: 62 AGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAA 121
Query: 176 NAALYAVKVLGIADEDLLERIRKYVEE 202
NAAL A ++L D++L +R+ + +
Sbjct: 122 NAALLAAQILATHDKELHQRLNDWRKA 148
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Length = 155
Score = 111 bits (280), Expect = 3e-32
Identities = 48/147 (32%), Positives = 76/147 (51%), Gaps = 3/147 (2%)
Query: 59 PIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKIII 118
+VG+IM S D M A L + +PYE K++ H+ YA +A+ERG+K+II
Sbjct: 2 SLVGVIMGSTSDWETMKYACDILDELNIPYEKKVVSAHRTPDYMFEYAETARERGLKVII 61
Query: 119 VGDGVEAHLSGVAAANSQILVIRVPLLSEDWSEDDVINSIRM---PSHVQVASVPRNNAK 175
G G AHL G+ AA + + VI VP+ S+ + D + SI V ++ + +
Sbjct: 62 AGAGGAAHLPGMVAAKTNLPVIGVPVQSKALNGLDSLLSIVQMPGGVPVATVAIGKAGST 121
Query: 176 NAALYAVKVLGIADEDLLERIRKYVEE 202
NA L A ++LG +D+ + + E
Sbjct: 122 NAGLLAAQILGSFHDDIHDALELRREA 148
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole
carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Length = 159
Score = 108 bits (270), Expect = 1e-30
Identities = 49/148 (33%), Positives = 78/148 (52%), Gaps = 3/148 (2%)
Query: 58 APIVGIIMESDLDLPVMNDAARTLSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII 117
AP+VGIIM S D M A L++ +P+E I+ H+ YA +A ERG+ +I
Sbjct: 2 APVVGIIMGSQSDWETMRHADALLTELEIPHETLIVSAHRTPDRLADYARTAAERGLNVI 61
Query: 118 IVGDGVEAHLSGVAAANSQILVIRVPL-LSEDWSEDDVINSIRMP--SHVQVASVPRNNA 174
I G G AHL G+ AA +++ V+ VP+ D +++ ++MP V ++ + A
Sbjct: 62 IAGAGGAAHLPGMCAAWTRLPVLGVPVESRALKGMDSLLSIVQMPGGVPVGTLAIGASGA 121
Query: 175 KNAALYAVKVLGIADEDLLERIRKYVEE 202
KNAAL A +L + + L R+ +
Sbjct: 122 KNAALLAASILALYNPALAARLETWRAL 149
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 28.1 bits (61), Expect = 0.64
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 171 RNNAKN--AALYAVKVLGIADEDLLERIRKY 199
+N N A + LG +LE + ++
Sbjct: 176 FHNVLNALAVIALFDSLGYDLAPVLEALEEF 206
>d2jfga3 c.72.2.1 (A:94-297)
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 27.8 bits (60), Expect = 0.69
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 171 RNNAKN--AALYAVKVLGIADEDLLERIRKY 199
++N N AAL G+ L+ + +
Sbjct: 173 QHNYTNALAALALADAAGLPRASSLKALTTF 203
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 27.8 bits (60), Expect = 0.69
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 163 HVQVASVPRNNAKN--AALYAVKVLGIADEDLLERIRKY 199
++ + N N AL + LG DLL+ +
Sbjct: 194 EIESHLMGAFNVSNLLLALATLLALGYPLADLLKTAARL 232
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 27.0 bits (58), Expect = 1.6
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 2/31 (6%)
Query: 171 RNNAKN--AALYAVKVLGIADEDLLERIRKY 199
R+N N AA +G + + +
Sbjct: 182 RHNIANALAAAALSMSVGATLDAIKAGLANL 212
>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase
MurC {Haemophilus influenzae [TaxId: 727]}
Length = 215
Score = 26.7 bits (58), Expect = 1.9
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 148 DWSEDDVINSIRMPSHVQVASVPRNNAKN--AALYAVKVLGIADEDLLERIRKY 199
VI +V + ++NA N AAL K GIA+E +LE + +
Sbjct: 161 FQGHYTVICPNNERINVLLNVPGKHNALNATAALAVAKEEGIANEAILEALADF 214
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 26.3 bits (56), Expect = 3.1
Identities = 4/18 (22%), Positives = 12/18 (66%)
Query: 102 ALSYALSAKERGIKIIIV 119
L A++ +++G+ I++
Sbjct: 17 GLRAAVATQQKGLSTIVL 34
>d1nsca_ b.68.1.1 (A:) Influenza neuraminidase {Influenza B virus,
different strains [TaxId: 11520]}
Length = 390
Score = 26.0 bits (57), Expect = 3.5
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 123 VEAHLSGVAAANSQILVIRVPLLSEDWSE 151
+ H G A NS L+IR P ++ E
Sbjct: 22 ISPHRFGEARGNSAPLIIREPFIACGPKE 50
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 25.3 bits (54), Expect = 5.4
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 103 LSYALSAKERGIKIIIV 119
+ +L+AK+ G +I+V
Sbjct: 32 FNASLAAKKAGANVILV 48
>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}
Length = 269
Score = 25.3 bits (54), Expect = 5.5
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 13/102 (12%)
Query: 105 YALSAKERGIKIIIVGDGVEAH--LSGVAAANSQILVIRVPLLSEDWSEDDVINSIRMPS 162
+ G+K+ ++ G+ H L+ A+ VP E ++D + +
Sbjct: 17 HNRGLTGSGVKVAVLDTGISTHPDLNIRGGAS------FVP--GEPSTQDGNGHGTHVAG 68
Query: 163 HVQVAS---VPRNNAKNAALYAVKVLGIADEDLLERIRKYVE 201
+ + A +A LYAVKVLG + + I + +E
Sbjct: 69 TIAALNNSIGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLE 110
>d1ta3a_ c.1.8.5 (A:) Xylanase inhibitor protein I, XIP-I {Wheat
(Triticum aestivum) [TaxId: 4565]}
Length = 274
Score = 25.5 bits (55), Expect = 5.6
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 81 LSDFGVPYEIKILPPHQNCKEALSYALSAKERGIKII--IVGDGVEAHLSGVAAANS 135
L FG + + + + + +G+ + I G G L +A
Sbjct: 38 LDVFGANGKYHLDLSGHDLSSVGADIKHCQSKGVPVSLSIGGYGTGYSLPSNRSALD 94
>d3c9fa1 d.114.1.1 (A:338-561) 5'-nucleotidase (syn. UDP-sugar
hydrolase), C-terminal domain {Candida albicans [TaxId:
5476]}
Length = 224
Score = 24.6 bits (53), Expect = 9.0
Identities = 10/53 (18%), Positives = 17/53 (32%)
Query: 140 IRVPLLSEDWSEDDVINSIRMPSHVQVASVPRNNAKNAALYAVKVLGIADEDL 192
IR L ++ D + +VP++ A A I+ L
Sbjct: 53 IRYDLYKGPYTIDSKFIVSPFENIWVNITVPKSVATKVAAKLNDADYISASRL 105
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.359
Gapped
Lambda K H
0.267 0.0566 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 725,393
Number of extensions: 32565
Number of successful extensions: 160
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 19
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.8 bits)