BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028884
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 214 bits (545), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 98/172 (56%), Positives = 132/172 (76%), Gaps = 1/172 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K++ KLVLLGD G GKS +VLRFV+ QF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 67
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG +D+T+ SF +A+ WV+ELQ G+P++VMAL GNK+
Sbjct: 68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 127
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPS 201
DL + R+V A+D YA++NG+FF+ETSAKTA N+ ++F EIA+RLPR P+
Sbjct: 128 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 179
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 209 bits (531), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 100/174 (57%), Positives = 128/174 (73%), Gaps = 1/174 (0%)
Query: 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
S +K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TTVKFE
Sbjct: 2 SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTTVKFE 60
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
IWDTAGQERY +LAP+YYRG YDIT+ ++F +A+ WVKELQ+ SP IV+AL G
Sbjct: 61 IWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAG 120
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
NKADL KR V ++ YA+ N + F+ETSAKTA N+N LF IAK+LP+ P
Sbjct: 121 NKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 174
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 62
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 63 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 170
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 208 bits (529), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 3 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 61
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 98/163 (60%), Positives = 124/163 (76%), Gaps = 1/163 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 3 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 61
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QERY +LAP+YYRG YDIT+ D+F +A+ WVKELQ+ SP+IV+AL GNKADL
Sbjct: 62 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 121
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
KR V Q+ YA+ N + F+ETSAKTA N+N++F IAK+L
Sbjct: 122 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 164
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 207 bits (527), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 3 KICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 61
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 3 KICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 61
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 98/164 (59%), Positives = 124/164 (75%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTTVKFEIWDTAG 63
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
ERY +LAP+YYRG YDIT+ D+F +A+ WVKELQ+ SP+IV+AL GNKADL
Sbjct: 64 LERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 123
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
KR V Q+ YA+ N + F+ETSAKTA N+N++F IAK+LP
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLP 167
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 207 bits (526), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 3 KICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 61
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 206 bits (525), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 3 KICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 61
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 206 bits (524), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 127/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 3 KICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 61
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 121
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 122 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 206 bits (524), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 99/168 (58%), Positives = 125/168 (74%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 4 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 62
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 63 TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 122
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F ETSAKT+ N+N++F IAK+LP+
Sbjct: 123 DLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXAIAKKLPK 170
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 205 bits (521), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 98/168 (58%), Positives = 126/168 (75%), Gaps = 1/168 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TTVKFEIWD
Sbjct: 2 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTTVKFEIWD 60
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAG ERY +LAP+YYRG YDIT+ +SF +A+ WVKELQ+ SP+IV+AL GNKA
Sbjct: 61 TAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKA 120
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
DL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 168
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 204 bits (520), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/163 (59%), Positives = 123/163 (75%), Gaps = 1/163 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLVLLG+S VGKS +VLRFV+GQF + T+ A+FL+QT+ L D TTVKFEIWDTAG
Sbjct: 5 QFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIQAAFLTQTVCL-DDTTVKFEIWDTAG 63
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QERY +LAP+YYRG YDIT+ D+F +A+ WVKELQ+ SP+IV+AL GNKADL
Sbjct: 64 QERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVIALAGNKADLA 123
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
KR V Q+ YA+ N + F+ETSAKTA N+N++F IAK+L
Sbjct: 124 SKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKL 166
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 86/163 (52%), Positives = 115/163 (70%), Gaps = 1/163 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ ALAP+YYRG YDIT ++F+ + WV+EL++HG P IV+A+ GNK DL +
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
REV +D +YA+ F+ETSAK A NIN+LF EI++R+P
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 178 bits (452), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/167 (52%), Positives = 114/167 (68%), Gaps = 1/167 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 24 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 82
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ +LAP+YYRG YDIT DSF + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 83 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
REVP +D EYAE G +ETSAK A NI +LF+ I++++P P
Sbjct: 143 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 87/166 (52%), Positives = 118/166 (71%), Gaps = 4/166 (2%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+KLVLLG++ VGKS IVLRFV F + T+GA+FL+Q + + + T VKFEIWDTAGQ
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQ 62
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD-LH 152
ER+A+LAP YYR YD+T P SF KA++WVKEL + S DI++ALVGNK D L
Sbjct: 63 ERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQ 122
Query: 153 E--KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
E +R+V ++G + AE+ G+ F ETSAKT +N+N +F I +++P
Sbjct: 123 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 114/163 (69%), Gaps = 1/163 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS I+ RFV FDP T+GASF+++T+ Q+ KF IWDTAG
Sbjct: 7 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGL 65
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ ALAP+YYRG YDIT ++F+ + WV+EL++HG P IV+A+ GNK DL +
Sbjct: 66 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
REV +D +YA+ F+ETSAK A NIN+LF EI++R+P
Sbjct: 126 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 168
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/171 (41%), Positives = 110/171 (64%), Gaps = 1/171 (0%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
GS + + K+VL+G++GVGK+C+V RF +G F P T+G F+ +T+ + + VK
Sbjct: 18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVK 76
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
+IWDTAGQER+ ++ YYR YDIT +SF W++E++++ S ++ L
Sbjct: 77 LQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVL 136
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
VGNK DL E+REV Q E++E M+++ETSAK +DN+ +LF ++A RL
Sbjct: 137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRL 187
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 152 bits (385), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 74/163 (45%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 22 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 80
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRG YDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 81 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 140
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
R VP + +AEKNG+ FIETSA + N+ F+ I + R
Sbjct: 141 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 183
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 75/171 (43%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Query: 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
SD + K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +
Sbjct: 2 SDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQ 60
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
IWDTAG ERY A+ YYRG YDI ++ + W+KEL+ H +IV+ LVG
Sbjct: 61 IWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVG 120
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
NK+DL R VP + +AEKNG+ FIETSA + N+ F+ I + R
Sbjct: 121 NKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYR 171
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 4/161 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I L+++ +K +IWDTAGQE
Sbjct: 9 KIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIGVEFATKSIQLKNNKIIKAQIWDTAGQE 68
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRG YDIT +SF + W+KEL+ + +IV+ LVGNK+DL
Sbjct: 69 RYRAITSAYYRGAVGALLVYDITKKNSFENIEKWLKELRDNADSNIVILLVGNKSDLKHL 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNI----NQLFEEI 191
R + D +YA+K + FIETSA A N+ +QL EI
Sbjct: 129 RVINDNDATQYAKKEKLAFIETSALEATNVELAFHQLLNEI 169
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEI 87
D + K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +I
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQI 82
Query: 88 WDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147
WDTAGQERY A+ YYRG YDI ++ + W+KEL+ H +IV+ LVGN
Sbjct: 83 WDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
K+DL R VP + +AEKNG+ FIETSA + N+ F+ I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 65/161 (40%), Positives = 106/161 (65%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K +++GD+GVGKSC++L+F +F P +T+G F ++ I + D +K +IWDTAGQE
Sbjct: 12 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQE 70
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
+ ++ YYRG YDIT D+FN W+++ ++H + ++V+ L+GNK+DL +
Sbjct: 71 SFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESR 130
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
REV ++G +A ++G+ F+ETSAKTA N+ + F AK +
Sbjct: 131 REVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 171
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 105/164 (64%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 72
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R YDIT+ +SF++ W+ +++ D+++ LVGNK DL
Sbjct: 73 QERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLS 132
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR+V ++G A++ + FIETSAK N+ QLF +A LP
Sbjct: 133 DKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 102/163 (62%), Gaps = 1/163 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAGQE
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGQE 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY + YYRG YDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 66 RYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHL 125
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
R VP + +AEKN + FIETSA + N+ + F+ I + R
Sbjct: 126 RAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYR 168
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEI 87
D + K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +I
Sbjct: 6 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQI 64
Query: 88 WDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147
WDTAG ERY A+ YYRG YDI ++ + W+KEL+ H +IV+ LVGN
Sbjct: 65 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGN 124
Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
K+DL R VP + +AEKNG+ FIETSA + N+ F+ I
Sbjct: 125 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 168
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/164 (44%), Positives = 102/164 (62%), Gaps = 1/164 (0%)
Query: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEI 87
D + K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +I
Sbjct: 24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQI 82
Query: 88 WDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147
WDTAG ERY A+ YYRG YDI ++ + W+KEL+ H +IV+ LVGN
Sbjct: 83 WDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGN 142
Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
K+DL R VP + +AEKNG+ FIETSA + N+ F+ I
Sbjct: 143 KSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 186
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/157 (45%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F+ SK T+G F +++I + D T+K +IWDTAG E
Sbjct: 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLE 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRG YDI ++ + W+KEL+ H +IV+ LVGNK+DL
Sbjct: 66 RYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIXLVGNKSDLRHL 125
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
R VP + +AEKNG+ FIETSA + N+ F+ I
Sbjct: 126 RAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTI 162
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 72/171 (42%), Positives = 105/171 (61%), Gaps = 2/171 (1%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
GS D N K+VL+G+SGVGK+ ++ RF R +F S+ T+G F ++T+ L + VK
Sbjct: 18 GSED-YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVK 75
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
+IWDTAG ERY A+ YYRG +D+T ++ + W+KEL H IV+ L
Sbjct: 76 AQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVML 135
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
VGNK+DL + REVP ++ +AE NG+ F+ETSA + N+ FE + K +
Sbjct: 136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 186
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/163 (43%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI+L++ T VK +IWDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTDSYISTIGVDFKIRTISLENKT-VKLQIWDTAGQE 69
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T DSF+ + W++E+ ++ ++ LVGNK DL K
Sbjct: 70 RFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQWIQEIDRYAMENVNKLLVGNKCDLVSK 129
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
R V + +G E A+ +G+ FIETSAK A N+ Q F +A + +
Sbjct: 130 RVVTSDEGRELADSHGIKFIETSAKNAYNVEQAFHTMAGEIKK 172
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 105/163 (64%), Gaps = 1/163 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 2 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 60
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R YDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 61 QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 120
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+KR++ ++G + A++ + FIETSAKT N+ QLF +A L
Sbjct: 121 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASAL 163
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 102/165 (61%), Gaps = 1/165 (0%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N K+VL+G+SGVGK+ ++ RF R +F S+ T+G F ++T+ L + VK +IWDT
Sbjct: 8 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVML-GTAAVKAQIWDT 66
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
AG ERY A+ YYRG +D+T ++ + W+KEL H IV+ LVGNK+D
Sbjct: 67 AGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSD 126
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
L + REVP ++ +AE NG+ F+ETSA + N+ FE + K +
Sbjct: 127 LSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI 171
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 104/164 (63%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T ++ ++WDTAG
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAG 64
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R YDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 65 QERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR+V ++G A++ + FIETSAK N+ QLF +A LP
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 168
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 64/164 (39%), Positives = 107/164 (65%), Gaps = 1/164 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K +++GD+GVGKSC++L+F +F P +T+G F ++ + + D +K +IWDTAGQE
Sbjct: 23 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNI-DGKQIKLQIWDTAGQE 81
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
+ ++ YYRG YDIT ++FN W+++ ++H S ++V+ L+GNK+DL +
Sbjct: 82 SFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198
R+V ++G +A ++G+ F+ETSAKTA N+ + F AK + R
Sbjct: 142 RDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRK 185
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 64/161 (39%), Positives = 105/161 (65%), Gaps = 1/161 (0%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
+L K+VL+GDSGVGKS ++ RF + +F+ SK T+G F ++T+ ++ +K +IWDT
Sbjct: 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-GKRIKAQIWDT 69
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
AGQERY A+ YYRG YDI+ S+ +W+ EL+++ ++ + L+GNK+D
Sbjct: 70 AGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSD 129
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
L R VP ++ +A++N + F ETSA ++N+++ FEE+
Sbjct: 130 LAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEEL 170
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 144 bits (364), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 6 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 64
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
ER+ +L P Y R YDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 65 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 124
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR+V ++G A++ + FIETSAK N+ QLF +A LP
Sbjct: 125 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 168
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 144 bits (363), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 68/163 (41%), Positives = 103/163 (63%), Gaps = 1/163 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 1 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 59
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R YDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 60 QERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 119
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+KR+V ++G A++ + FIETSAK N+ QLF +A L
Sbjct: 120 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 162
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 74
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
ER+ +L P Y R YDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 75 LERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 134
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR+V ++G A++ + FIETSAK N+ QLF +A LP
Sbjct: 135 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 178
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 143 bits (361), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 67/164 (40%), Positives = 103/164 (62%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T ++ ++WDTAG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAG 71
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
ER+ +L P Y R YDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 72 LERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLA 131
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR+V ++G A++ + FIETSAK N+ QLF +A LP
Sbjct: 132 DKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 175
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 101/163 (61%), Gaps = 3/163 (1%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K++++G+SGVGKS ++LRF FDP T+G F +TI++ D K IWDTAGQ
Sbjct: 16 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISV-DGNKAKLAIWDTAGQ 74
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLH 152
ER+ L P YYRG YD+T D+F K W+ EL+ + + DIV LVGNK D
Sbjct: 75 ERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNXLVGNKID-K 133
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E REV +G+++A K+ FIE SAKT D + FEE+ +++
Sbjct: 134 ENREVDRNEGLKFARKHSXLFIEASAKTCDGVQCAFEELVEKI 176
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 1 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 59
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL K
Sbjct: 60 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 119
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 120 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 164
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 18 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 76
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL K
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 66
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL K
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 8 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 66
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL K
Sbjct: 67 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 127 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 171
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 140 bits (354), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 72/165 (43%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 27 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 85
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL K
Sbjct: 86 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 145
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 146 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 190
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 140 bits (352), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 97/161 (60%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VLLG+ VGK+ +VLR+ +F+ T+GASFL++ + + V IWDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI-GGKRVNLAIWDTAGQE 66
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ AL P+YYR YDIT DSF K + WVKEL+K +I + +VGNK DL ++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R V Q+ YAE G TSAK I +LF ++ KR+
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGK+C++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 18 KLLLIGDSGVGKNCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 76
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL K
Sbjct: 77 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 137 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/164 (43%), Positives = 100/164 (60%), Gaps = 5/164 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 35 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 93
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL K
Sbjct: 94 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE----EIAKR 194
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR
Sbjct: 154 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFXTXAAEIKKR 197
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 139 bits (351), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/169 (40%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K++L+GDSGVGKSC+++RFV +F+P+ T+G F +T+ + + VK +IWDTAGQ
Sbjct: 4 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQ 62
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ + YYRG YDIT +F + W K + +H + + + LVGNK+D+ E
Sbjct: 63 ERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
R V A G A++ G+ FIE+SAK DN+N++F +AK + S+
Sbjct: 122 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/157 (40%), Positives = 99/157 (63%), Gaps = 1/157 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF +F+ SK T+G F ++TI +++ +K +IWDTAG E
Sbjct: 12 KIVLIGDSGVGKSNLLSRFTTDEFNIESKSTIGVEFATRTIEVENKK-IKAQIWDTAGLE 70
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRG YDI+ S+ +W+ EL+++ ++ + L+GNK+DL
Sbjct: 71 RYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLTELRENADDNVAVGLIGNKSDLAHL 130
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
R VP + +A +N M F ETSA +DN+++ F E+
Sbjct: 131 RAVPTDEAKNFAMENQMLFTETSALNSDNVDKAFREL 167
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K++L+GDSGVGKSC+++RFV +F+P+ T+G F +T+ + + VK ++WDTAGQ
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQ 79
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ + YYRG YD+T +F + W K + +H + + + LVGNK+D+ E
Sbjct: 80 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 138
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
R V A G A++ G+ FIE+SAK DN+N++F +AK + S+
Sbjct: 139 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 187
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGK+C++ RF F+ T T+G F +TI L D +K +IWDTAGQE
Sbjct: 8 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 66
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YDIT+ SF+ + W++ +++H S D+ ++GNK D+++K
Sbjct: 67 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
R+V + G + A G+ F+ETSAK N+ F +A+ +
Sbjct: 127 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 168
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/162 (40%), Positives = 100/162 (61%), Gaps = 1/162 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGK+C++ RF F+ T T+G F +TI L D +K +IWDTAGQE
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQE 68
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YDIT+ SF+ + W++ +++H S D+ ++GNK D+++K
Sbjct: 69 RFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
R+V + G + A G+ F+ETSAK N+ F +A+ +
Sbjct: 129 RQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK 170
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 67/169 (39%), Positives = 106/169 (62%), Gaps = 2/169 (1%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K++L+GDSGVGKSC+++RFV +F+P+ T+G F +T+ + + VK ++WDTAGQ
Sbjct: 8 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQ 66
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ + YYRG YD+T +F + W K + +H + + + LVGNK+D+ E
Sbjct: 67 ERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-E 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
R V A G A++ G+ FIE+SAK DN+N++F +AK + S+
Sbjct: 126 TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 174
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/168 (41%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++L+GDSGVGKSC+++RFV +F+P+ T+G F +T+ + + VK +IWDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQE 63
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YDIT +F + W K + +H + + + LVGNK+D E
Sbjct: 64 RFRTITTAYYRGAXGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XET 122
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
R V A G A++ G+ FIE+SAK DN+N++F +AK + S+
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/165 (43%), Positives = 100/165 (60%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 68
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVG K DL K
Sbjct: 69 RFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGIKCDLTTK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 129 KVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 173
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VLLG+ VGK+ +VLR+ +F+ T+ ASFL++ + + V IWDTAGQE
Sbjct: 22 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI-GGKRVNLAIWDTAGQE 80
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ AL P+YYR YDIT DSF K + WVKEL+K +I + +VGNK DL ++
Sbjct: 81 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 140
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R V Q+ YAE G TSAK I +LF ++ KR+
Sbjct: 141 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 181
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 137 bits (344), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 69
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +S+ + W++E+ ++ S ++ LVGNK+DL K
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 96/161 (59%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VLLG+ VGK+ +VLR+ +F+ T+ ASFL++ + + V IWDTAGQE
Sbjct: 8 KVVLLGEGCVGKTSLVLRYCENKFNDKHITTLQASFLTKKLNI-GGKRVNLAIWDTAGQE 66
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ AL P+YYR YDIT DSF K + WVKEL+K +I + +VGNK DL ++
Sbjct: 67 RFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R V Q+ YAE G TSAK I +LF ++ KR+
Sbjct: 127 RHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM 167
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/165 (42%), Positives = 101/165 (61%), Gaps = 5/165 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQE
Sbjct: 11 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQE 69
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +S+ + W++E+ ++ S ++ LVGNK+DL K
Sbjct: 70 RFRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTK 129
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF----EEIAKRL 195
+ V E+A+ G+ F+ETSAK A N+ Q F EI KR+
Sbjct: 130 KVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRM 174
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+G+SGVGKSC++LRF + T+G F +T+ L D TVK +IWDTAGQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 68
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ + ++ LVGNK DL +K
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198
R V E+A+ N M F+ETSA + N+ F +A+++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 172
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 136 bits (343), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 66/164 (40%), Positives = 99/164 (60%), Gaps = 1/164 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+G+SGVGKSC++LRF + T+G F +T+ L D TVK +IWDTAGQE
Sbjct: 10 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 68
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ + ++ LVGNK DL +K
Sbjct: 69 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198
R V E+A+ N M F+ETSA + N+ F +A+++
Sbjct: 129 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKES 172
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/168 (40%), Positives = 105/168 (62%), Gaps = 2/168 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++L+GDSGVGKSC+++RFV +F+P+ T+G F +T+ + + VK ++WDTAGQE
Sbjct: 5 KILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQE 63
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +F + W K + +H + + + LVGNK+D E
Sbjct: 64 RFRTITTAYYRGAXGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSD-XET 122
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
R V A G A++ G+ FIE+SAK DN+N++F +AK + S+
Sbjct: 123 RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSN 170
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 99/162 (61%), Gaps = 1/162 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+G+SGVGKSC++LRF + T+G F +T+ L D TVK +IWDTAGQE
Sbjct: 23 KLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQE 81
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+T +SFN + W++E+ ++ + ++ LVGNK DL +K
Sbjct: 82 RFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK 141
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
R V E+A+ N M F+ETSA + N+ F +A+++
Sbjct: 142 RVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK 183
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 134 bits (337), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 68/173 (39%), Positives = 107/173 (61%), Gaps = 2/173 (1%)
Query: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFE 86
D ++ K++L+GDSGVGK+C+++RF G F + + TVG F ++ + + D VK +
Sbjct: 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQ 63
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
+WDTAGQER+ ++ YYR YD+T+ SF+ Q W+ E+ ++ D+ + L+G
Sbjct: 64 MWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLG 123
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPS 199
NK D +R V +DG + A++ G+ F+ETSAKT N++ F IAK L R S
Sbjct: 124 NKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 134 bits (336), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K +++GD GVGKSC++ +F +F T+G F ++ I + +K +IWDTAGQE
Sbjct: 17 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQE 75
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ A+ YYRG YDIT ++N W+ + + +P+ V+ L+GNKADL +
Sbjct: 76 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R+V ++ ++AE+NG+ F+E SAKT +N+ F E AK++
Sbjct: 136 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 176
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 131 bits (329), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 97/163 (59%), Gaps = 1/163 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ I+ RF FD + T+G FLS+T+ L D V+ ++WDTAG
Sbjct: 1 KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIGIDFLSKTLYL-DEGPVRLQLWDTAG 59
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R YDIT+ SF W++++ D+++ALVGNK DL
Sbjct: 60 QERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLG 119
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V ++G + A++ F ETSAK NI LF++ A +L
Sbjct: 120 DLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLFKKTASKL 162
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 130 bits (328), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K +++GD GVGKSC++ +F +F T+G F ++ I + +K +IWDTAGQ
Sbjct: 32 KYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEV-SGQKIKLQIWDTAGQG 90
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ A+ YYRG YDIT ++N W+ + + +P+ V+ L+GNKADL +
Sbjct: 91 RFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 150
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R+V ++ ++AE+NG+ F+E SAKT +N+ F E AK++
Sbjct: 151 RDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI 191
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 99/161 (61%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K +++G +G GKSC++ +F+ +F S T+G F S+ + + TVK +IWDTAGQE
Sbjct: 27 KFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQE 85
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ ++ YYRG YDITS +++N W+ + + SP+IV+ L GNK DL +
Sbjct: 86 RFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
REV + +A++N + F+ETSA T +N+ + F + A+ +
Sbjct: 146 REVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTI 186
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 127 bits (318), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 93/162 (57%), Gaps = 2/162 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLVL+GD+ VGK+C+V RF G F T+G F +T+ +Q VK +IWDTAGQE
Sbjct: 31 KLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQE 89
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYR YDIT SF +W+++++K+ +IV L+GNK+DL E
Sbjct: 90 RFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149
Query: 155 REVPAQDGIEYAEKNGMFF-IETSAKTADNINQLFEEIAKRL 195
REV + AE + IETSAK + N+ + F +A L
Sbjct: 150 REVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 191
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 62/175 (35%), Positives = 102/175 (58%), Gaps = 1/175 (0%)
Query: 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
S+ + K +++G++G GKSC++ +F+ +F S T+G F S+ I + VK +
Sbjct: 4 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQ 62
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
IWDTAGQER+ ++ YYRG YDITS +++N W+ + + S +IV+ L G
Sbjct: 63 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 122
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPS 201
NK DL REV + +A++N + F+ETSA T +N+ + F + A+++ S
Sbjct: 123 NKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES 177
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 104/199 (52%), Gaps = 39/199 (19%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL----------------- 77
K VLLG+S VGKS IVLR + F + T+GASF + + L
Sbjct: 9 KTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNI 68
Query: 78 -------------------QDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITS 118
++ +KF+IWDTAGQERYA++ PLYYRG +DI++
Sbjct: 69 NSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISN 128
Query: 119 PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178
++ ++A+ WV +L+ S + ++ LV NK D K +V + +YA+ N + FI+TSA
Sbjct: 129 SNTLDRAKTWVNQLKI--SSNYIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSA 185
Query: 179 KTADNINQLFEEIAKRLPR 197
KT NI +F +A+ + +
Sbjct: 186 KTGTNIKNIFYMLAEEIYK 204
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/169 (35%), Positives = 101/169 (59%), Gaps = 1/169 (0%)
Query: 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
S+ + K +++G++G GKSC++ +F+ +F S T+G F S+ I + VK +
Sbjct: 5 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQ 63
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
IWDTAGQER+ ++ YYRG YDITS +++N W+ + + S +IV+ L G
Sbjct: 64 IWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 123
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
NK DL REV + +A++N + F+ETSA T +++ + F + A+++
Sbjct: 124 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 172
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+L+G+S VGK+ + R+ F P TVG F +T+ D +K +IWDTAGQE
Sbjct: 24 KLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKR-IKLQIWDTAGQE 82
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY + YYRG YDI + +SF Q W +++ + + + LVGNK DL ++
Sbjct: 83 RYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192
R VPA+DG A+ G F E SAK N+ Q+FE +
Sbjct: 143 RVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLV 180
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/178 (38%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 15 SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
S G NL G+ D KL+++G+S VGK+ + R+ F P TVG F +T
Sbjct: 8 SSGRENLYFQGNFD---YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKT 64
Query: 75 IALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK 134
+ + VK +IWDTAGQERY + YYRG YDIT+ +SFN Q W +++
Sbjct: 65 VYRHEKR-VKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKT 123
Query: 135 HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192
+ + + LVGNK D+ E+R VP + G AE+ G F E SAK ++ Q FE +
Sbjct: 124 YSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLV 181
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/168 (36%), Positives = 97/168 (57%), Gaps = 2/168 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KL+++GDSGVGKS ++LRF F + T+G F +T+ + + VK +IWDTAGQE
Sbjct: 11 KLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQE 69
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
R+ + YYRG YD+TS +SF + W+ E+ ++ D+ LVGNK D E+
Sbjct: 70 RFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPER 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
+ V +D ++A + G+ ETSAK N+ ++F I + + R +
Sbjct: 129 KVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN 176
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/169 (34%), Positives = 100/169 (59%), Gaps = 1/169 (0%)
Query: 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
S+ + K +++G++G GKSC++ +F+ +F S T+G F S+ I + VK +
Sbjct: 2 SETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINV-GGKYVKLQ 60
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVG 146
IWDTAG ER+ ++ YYRG YDITS +++N W+ + + S +IV+ L G
Sbjct: 61 IWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCG 120
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
NK DL REV + +A++N + F+ETSA T +++ + F + A+++
Sbjct: 121 NKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAFVQCARKI 169
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G+S VGK+ + R+ F P TVG F +TI D +K +IWDTAGQE
Sbjct: 7 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR-IKLQIWDTAGQE 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY + YYRG YDIT+ +SFN Q W +++ + + + LVGNK D+ ++
Sbjct: 66 RYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE 125
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192
R V ++ G + A+ G F E SAK N+ Q FE +
Sbjct: 126 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 163
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/176 (34%), Positives = 101/176 (57%), Gaps = 6/176 (3%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
GS + +++++++G GVGK+ ++ RF F K TVG F +T+ L+ ++
Sbjct: 18 GSPRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIR 76
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
+IWDTAGQER+ ++ YYR YDIT ++F+ W+K + K+ S D + L
Sbjct: 77 LQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLL 136
Query: 145 VGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLF----EEIAKRL 195
VGNK D RE+ Q G ++A++ GM F E SAK N++++F ++I K++
Sbjct: 137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKM 192
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + +K+++LGDSGVGK+ ++ ++V +F K T+GA FL++ + + D V +IWD
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
TAGQER+ +L +YRG +D+T+P++F W E SP + ++
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEEIAK 193
GNK DL E R+V + + KN + + ETSAK A N+ Q F+ IA+
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 114 bits (286), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/169 (36%), Positives = 98/169 (57%), Gaps = 7/169 (4%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + +K+++LGDSGVGK+ ++ ++V +F K T+GA FL++ + + D V +IWD
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
TAGQER+ +L +YRG +D+T+P++F W E SP + ++
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEEIAK 193
GNK DL E R+V + + KN + + ETSAK A N+ Q F+ IA+
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 7/169 (4%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + +K+++LGDSGVGK+ ++ ++V +F K T+GA FL++ + + D V +IWD
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
TAGQER+ +L +YRG +D+T+P++F W E SP + ++
Sbjct: 64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEEIAK 193
GNK D E R+V + + KN + + ETSAK A N+ Q F+ IA+
Sbjct: 124 GNKIDF-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 113 bits (283), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G+S VGK+ + R+ F P TVG F +TI D +K +IWDTAG E
Sbjct: 10 KILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKR-IKLQIWDTAGLE 68
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY + YYRG YDIT+ +SFN Q W +++ + + + LVGNK D ++
Sbjct: 69 RYRTITTAYYRGAXGFILXYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDE 128
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192
R V ++ G + A+ G F E SAK N+ Q FE +
Sbjct: 129 RVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLV 166
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 113 bits (282), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/187 (36%), Positives = 102/187 (54%), Gaps = 19/187 (10%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ------ 78
GS D L +KL+ LGDSGVGK+ + R+ +F+P TVG F + +
Sbjct: 18 GSGDYDYL-IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNG 76
Query: 79 ---DSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH 135
+ V ++WDTAGQER+ +L ++R +D+TS SF + W+ +LQ +
Sbjct: 77 SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 136
Query: 136 G---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LF 188
+PDIV L+GNKADL ++REV + E A+K G+ + ETSA T N+ + L
Sbjct: 137 AYCENPDIV--LIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLL 194
Query: 189 EEIAKRL 195
+ I KR+
Sbjct: 195 DLIMKRM 201
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 112 bits (281), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 74/116 (63%), Gaps = 1/116 (0%)
Query: 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER 95
L+L+GDSGVGKSC++LRF + + T+G F +TI L D T+K +IWDTAGQER
Sbjct: 1 LLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER 59
Query: 96 YAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
+ + YYRG YD+T +SFN + W++E+ ++ S ++ LVGNK DL
Sbjct: 60 FRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 95/166 (57%), Gaps = 6/166 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++GDS VGK+C+ RF G+F ++ T+G F + + + D +K ++WDTAGQE
Sbjct: 22 KIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLWDTAGQE 80
Query: 95 RY-AALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLH 152
R+ ++ YYR YD+T+ SF+ W++E ++H + DI LVGNK DL
Sbjct: 81 RFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLR 140
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTA---DNINQLFEEIAKRL 195
+VP ++A+ + M ETSAK D++ +F +A +L
Sbjct: 141 SAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL 186
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/169 (36%), Positives = 97/169 (57%), Gaps = 7/169 (4%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K + +K+++LGDSGVGK+ ++ ++V +F K T+GA FL++ + + D V +IWD
Sbjct: 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRL-VTMQIWD 63
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP----DIVMALV 145
TAG ER+ +L +YRG +D+T+P++F W E SP + ++
Sbjct: 64 TAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVL 123
Query: 146 GNKADLHEKREVPAQDGIEYA-EKNGMFFIETSAKTADNINQLFEEIAK 193
GNK DL E R+V + + KN + + ETSAK A N+ Q F+ IA+
Sbjct: 124 GNKIDL-ENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 171
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 111 bits (277), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 18/180 (10%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ---------DSTTVK 84
+KL+ LGDSGVGK+ + R+ +F+P TVG F + + + V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
++WDTAG ER+ +L ++R +D+TS SF + W+ +LQ + +PDIV
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 197
L+GNKADL ++REV + E AEK G+ + ETSA T N+ + L + I KR+ +
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 110 bits (276), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 64/180 (35%), Positives = 98/180 (54%), Gaps = 18/180 (10%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ---------DSTTVK 84
+KL+ LGDSGVGK+ + R+ +F+P TVG F + + + V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
++WDTAG ER+ +L ++R +D+TS SF + W+ +LQ + +PDIV
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 197
L+GNKADL ++REV + E AEK G+ + ETSA T N+ + L + I KR+ +
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIMKRMEK 189
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 110 bits (275), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/176 (36%), Positives = 99/176 (56%), Gaps = 11/176 (6%)
Query: 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
SS KN+ +K+++LGDSGVGK+ ++ R+V ++ K T+GA FL++ + +
Sbjct: 2 SSRKKNI-LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATM 60
Query: 86 EIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV- 141
++WDTAGQER+ +L +YRG YD+T+ SF + W E H SP+
Sbjct: 61 QVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFP 120
Query: 142 MALVGNKADLHE-KREVPAQDGIEYAEKNG---MFFIETSAKTADNINQLFEEIAK 193
++GNK D E K+ V + E A+ G +F TSAK A N++ FEEIA+
Sbjct: 121 FVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFL--TSAKNAINVDTAFEEIAR 174
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/172 (33%), Positives = 96/172 (55%), Gaps = 6/172 (3%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
A++ K++++GDS VGK+C+ RF G+F ++ T+G F + + + D +K ++W
Sbjct: 25 ARSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDI-DGERIKIQLW 83
Query: 89 DTAGQERY-AALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVG 146
DTAGQER+ ++ YYR YD T+ SF+ W++E ++H + DI LVG
Sbjct: 84 DTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRILVG 143
Query: 147 NKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA---DNINQLFEEIAKRL 195
NK DL +VP ++A+ + ETSAK D++ +F +A +L
Sbjct: 144 NKCDLRSAIQVPTDLAQKFADTHSXPLFETSAKNPNDNDHVEAIFXTLAHKL 195
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 108 bits (271), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 98/185 (52%), Gaps = 18/185 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI---------ALQDSTTVK 84
+K + LGDSGVGK+ ++ ++ G+F+ TVG F + + A+ +
Sbjct: 12 IKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIH 71
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
++WDTAG ER+ +L ++R +D+T+ SF + W+ +LQ H +PDIV
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 197
L GNK+DL ++R V ++ E AEK G+ + ETSA NI+ L + I KR+ R
Sbjct: 132 --LCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMER 189
Query: 198 PSPSS 202
S
Sbjct: 190 SVDKS 194
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 18/180 (10%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ---------DSTTVK 84
+KL+ LGDSGVGK+ + R+ +F+P TVG F + + + V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
++WDTAG ER+ +L ++R +D+TS SF + W +LQ + +PDIV
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 197
L+GNKADL ++REV + E AEK G+ + ETSA T N+ + L + I KR +
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 107 bits (268), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 66/180 (36%), Positives = 98/180 (54%), Gaps = 18/180 (10%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ---------DSTTVK 84
+KL+ LGDSGVGK+ + R+ +F+P TVG F + + + V
Sbjct: 12 IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVH 71
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG---SPDIV 141
++WDTAG ER+ +L ++R +D+TS SF + W +LQ + +PDIV
Sbjct: 72 LQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV 131
Query: 142 MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ----LFEEIAKRLPR 197
L+GNKADL ++REV + E AEK G+ + ETSA T N+ + L + I KR +
Sbjct: 132 --LIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXEK 189
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 103 bits (256), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 89/171 (52%), Gaps = 7/171 (4%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL GD+ VGKS ++R + +F T+G F +T+ + TV ++WDTAGQE
Sbjct: 30 KIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTV-LQLWDTAGQE 88
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE- 153
R+ ++A Y+R YD+T SF + WV ++ + + LVGNKAD+ +
Sbjct: 89 RFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDT 148
Query: 154 -----KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPS 199
++ VP G + A G F ETSAK NI + +A+ + + +
Sbjct: 149 AATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVKKRT 199
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/176 (34%), Positives = 92/176 (52%), Gaps = 7/176 (3%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
G+ K+ K++LLGD GVGKS ++ R+V +FD T+G FL++ + + D V
Sbjct: 1 GAMAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVT 59
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS----PDI 140
+IWDTAGQER+ +L +YRG + + SF W KE +
Sbjct: 60 MQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESF 119
Query: 141 VMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 195
++GNK D+ E R+V ++ + NG + + ETSAK A N+ FEE +R+
Sbjct: 120 PFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 174
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/174 (33%), Positives = 92/174 (52%), Gaps = 7/174 (4%)
Query: 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFE 86
S K+ K++LLGD GVGKS ++ R+V +FD T+G FL++ + + D V +
Sbjct: 5 SAGKSSLFKIILLGDGGVGKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEV-DGHFVTMQ 63
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS----PDIVM 142
IWDTAGQER+ +L +YRG + + SF W KE +
Sbjct: 64 IWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF 123
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 195
++GNK D+ E R+V ++ + + NG + + ETSAK + N+ FEE +R+
Sbjct: 124 VILGNKTDIKE-RQVSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEAVRRI 176
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 58/166 (34%), Positives = 88/166 (53%), Gaps = 7/166 (4%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++LLGD GVGKS ++ R+V +FD T+G FL++ + + D V +IWDTAGQE
Sbjct: 9 KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQE 67
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKAD 150
R+ +L +YRG + + SF W KE + ++GNK D
Sbjct: 68 RFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKID 127
Query: 151 LHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 195
+ E R+V ++ + NG + + ETSAK A N+ FEE +R+
Sbjct: 128 ISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 172
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 100 bits (250), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 63
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 64 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 122
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 8 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 65
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 66 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 124
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 125 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 176
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 63
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 64 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 122
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 100 bits (249), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 7/171 (4%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K+L +K++LLGD GVGKS ++ R+V +FD + T+G FL++ + + D V +IWD
Sbjct: 4 KSLLLKVILLGDGGVGKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEV-DGRFVTLQIWD 62
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS----PDIVMALV 145
TAGQER+ +L +YRG + + SF W KE + ++
Sbjct: 63 TAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNWQKEFIYYADVKDPEHFPFVVL 122
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRL 195
GNK D E R+V ++ + +NG + ++ETSAK N+ FEE +++
Sbjct: 123 GNKVD-KEDRQVTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEAVRQV 172
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 6 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 63
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 64 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 122
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 123 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 174
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 5 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 62
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 63 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 121
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 64
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 65 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 123
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 100 bits (249), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 5 IRKKLVIVGDVACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 62
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 63 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 121
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 122 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 173
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEV--DGKQVELALWDTA 81
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 140
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V +++G + A + F ++E SAKT + + ++FE
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ + QF TV ++++ D V+ +WDTA
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ + QF TV ++++ D V+ +WDTA
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 97.1 bits (240), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 84/169 (49%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
GS + + L K+ L+GD GVGK+ + R + G+F+ TVGA T +K
Sbjct: 3 GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIK 62
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
F +WDTAGQE+ A L +YY G +D+TS + WVKE Q + + +
Sbjct: 63 FNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVV 122
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193
NK D+ ++++ + +E + + E SAKTA N F +A+
Sbjct: 123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ + QF TV ++++ D V+ +WDTA
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 59
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 60 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 118
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ + QF TV ++++ D V+ +WDTA
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 121 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 96.7 bits (239), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ + QF TV ++++ D V+ +WDTA
Sbjct: 2 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 59
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 60 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 118
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 119 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 170
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 96.7 bits (239), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 92/172 (53%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIADIEV--DGKQVELALWDTA 81
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 82 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFXPNVPIILVGNKKD 140
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V +++G + A + F ++E SAKT + + ++FE
Sbjct: 141 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 192
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV+LG GVGKS + ++FV+G F T+ S+ Q D+ EI DTAG E
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DAQQCMLEILDTAGTE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
++ A+ LY + Y IT+ +FN Q ++ L+ + D+ M LVGNK DL +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 122
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEEIAKRLPR 197
+R V + G A + N F+E+SAK+ N+N++F ++ +++ R
Sbjct: 123 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 96.3 bits (238), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 4/165 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV+LG GVGKS + ++FV+G F T+ S+ Q D+ EI DTAG E
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DAQQCMLEILDTAGTE 64
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
++ A+ LY + Y IT+ +FN Q ++ L+ + D+ M LVGNK DL +
Sbjct: 65 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLED 124
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEEIAKRLPR 197
+R V + G A + N F+E+SAK+ N+N++F ++ +++ R
Sbjct: 125 ERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQINR 169
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 95.5 bits (236), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 89/172 (51%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ F + QF TV ++++ D V+ +WDTA
Sbjct: 4 IRKKLVIVGDVACGKTCLLIVFSKDQFPAVYVPTVFENYVADIEV--DGKQVELALWDTA 61
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 62 GQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H RE V +G + A + G F ++E SAKT D + ++FE
Sbjct: 121 LRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTKDGVREVFE 172
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 94.0 bits (232), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 60/172 (34%), Positives = 90/172 (52%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ + QF TV ++++ D V+ +WDTA
Sbjct: 7 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEV--DGKQVELALWDTA 64
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
G E Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 65 GLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 123
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V ++G + A + G F ++E SAKT D + ++FE
Sbjct: 124 LRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFE 175
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 93.6 bits (231), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 59/172 (34%), Positives = 91/172 (52%), Gaps = 17/172 (9%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+R KLV++GD GK+C+++ + QF TV ++++ D V+ +WDTA
Sbjct: 4 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYIADIEV--DGKQVELALWDTA 61
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKAD 150
GQE Y L PL Y + I SPDS N + W E+ KH P++ + LVGNK D
Sbjct: 62 GQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEV-KHFCPNVPIILVGNKKD 120
Query: 151 L----HEKRE--------VPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
L H +RE V +++G + A + F ++E SAKT + + ++FE
Sbjct: 121 LRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFE 172
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 93.6 bits (231), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV+LG GVGKS + ++FV+G F T+ S+ Q D EI DTAG E
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEV--DCQQCMLEILDTAGTE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
++ A+ LY + Y IT+ +FN Q ++ L+ + D+ M LVGNK DL +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEEIAKRLPR 197
+R V + G A + F+E+SAK+ N+N++F ++ +++ R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 93.2 bits (230), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/165 (34%), Positives = 90/165 (54%), Gaps = 4/165 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV+LG GVGKS + ++FV+G F T+ S+ Q D EI DTAG E
Sbjct: 5 KLVVLGSGGVGKSALTVQFVQGIFVDEYDPTIEDSYRKQVEV--DCQQCMLEILDTAGTE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKADLHE 153
++ A+ LY + Y IT+ +FN Q ++ L+ + D+ M LVGNK DL +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 122
Query: 154 KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEEIAKRLPR 197
+R V + G A + F+E+SAK+ N+N++F ++ +++ R
Sbjct: 123 ERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQINR 167
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GVGKS + L+F+ +F + T S+ + + D V+ +I DTAG E
Sbjct: 9 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLE 66
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPD-IVMALVGNKADLH 152
YAA+ Y+R + IT +SF A++ + L+ D I + +VGNK+DL
Sbjct: 67 DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLE 126
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E+R+VP ++ AE+ G+ ++ETSAKT N++++F ++ + +
Sbjct: 127 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 169
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/163 (33%), Positives = 95/163 (58%), Gaps = 4/163 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GVGKS + L+F+ +F + T S+ + + D V+ +I DTAG E
Sbjct: 5 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPD-IVMALVGNKADLH 152
YAA+ Y+R + IT +SF A++ + L+ D I + +VGNK+DL
Sbjct: 63 DYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLE 122
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E+R+VP ++ AE+ G+ ++ETSAKT N++++F ++ + +
Sbjct: 123 ERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDLMREI 165
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 91.3 bits (225), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 86/161 (53%), Gaps = 2/161 (1%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+V++G+ VGKS ++ R+ +G F K T+G FL + I + D V+ +WDTAGQ
Sbjct: 6 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDED-VRLMLWDTAGQ 64
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
E + A+ YYRG + T +SF W +E DI ALV NK DL +
Sbjct: 65 EEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW-REKVVAEVGDIPTALVQNKIDLLD 123
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKR 194
+ ++ A++ + F TS K N++++F+ +A++
Sbjct: 124 DSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 164
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GVGKS + L+F+ +F + T S+ + + D V+ +I DTAGQE
Sbjct: 16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 73
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
YAA+ Y+R + IT +SF A + + L+ ++ LVGNK+DL +
Sbjct: 74 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 133
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
KR+V ++ AE+ + ++ETSAKT N++++F ++ + +
Sbjct: 134 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GVGKS + L+F+ +F + T S+ + + D V+ +I DTAGQE
Sbjct: 20 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 77
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
YAA+ Y+R + IT +SF A + + L+ ++ LVGNK+DL +
Sbjct: 78 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 137
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
KR+V ++ AE+ + ++ETSAKT N++++F ++ + +
Sbjct: 138 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 179
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GVGKS + L+F+ +F + T S+ + + D V+ +I DTAGQE
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
YAA+ Y+R + IT +SF A + + L+ ++ LVGNK+DL +
Sbjct: 66 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
KR+V ++ AE+ + ++ETSAKT N++++F ++ + +
Sbjct: 126 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 89.0 bits (219), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 17/178 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG 92
+K V +GD VGK+C+++ + F PT V TV +F + + D TV +WDTAG
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTSNTF-PTDYVPTVFDNFSANVVV--DGNTVNLGLWDTAG 63
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL 151
QE Y L PL YRG + + S S+ N A+ W+ EL +H +P + + LVG K DL
Sbjct: 64 QEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPEL-RHYAPGVPIILVGTKLDL 122
Query: 152 HEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEEIAKRLPRP 198
+ ++ + G E + G +IE S+KT N+ +F+ K + +P
Sbjct: 123 RDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQNVKAVFDAAIKVVLQP 180
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 22/193 (11%)
Query: 11 SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF 70
SSG G NL +R KLV++GD GK+C+++ F + +F TV ++
Sbjct: 8 SSGVDLGTENLYFQSM-----IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY 62
Query: 71 LSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWV 129
++ D V+ +WDTAGQE Y L PL Y + + SPDS N + WV
Sbjct: 63 VADIEV--DGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWV 120
Query: 130 KELQKHGSPDIVMALVGNKADL----HEKRE--------VPAQDGIEYAEKNGMF-FIET 176
E+ KH P++ + LV NK DL H + E V DG A + + ++E
Sbjct: 121 PEV-KHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179
Query: 177 SAKTADNINQLFE 189
SAKT + + ++FE
Sbjct: 180 SAKTKEGVREVFE 192
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 87.4 bits (215), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 92/162 (56%), Gaps = 3/162 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GVGKS + L+F+ +F + T S+ + + D V+ +I DTAGQE
Sbjct: 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGQE 63
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
YAA+ Y+R + IT +SF A + + L+ ++ LVGNK+DL +
Sbjct: 64 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 123
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
KR+V ++ A++ + ++ETSAKT N++++F ++ + +
Sbjct: 124 KRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI 165
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 87.0 bits (214), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 90/178 (50%), Gaps = 17/178 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG 92
+K V +GD VGK+C+++ + F PT V TV +F + + D +TV +WDTAG
Sbjct: 7 IKCVTVGDGAVGKTCMLISYTGNTF-PTDYVPTVFDNFSANVVV--DGSTVNLGLWDTAG 63
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL 151
QE Y L PL YRG + + S S+ N + W+ EL KH +P I + LVG K DL
Sbjct: 64 QEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPEL-KHYAPGIPIVLVGTKLDL 122
Query: 152 HEKREV----PAQDGIEYAEKN-------GMFFIETSAKTADNINQLFEEIAKRLPRP 198
+ ++ P I A+ + ++E S+KT N+ +F+ + RP
Sbjct: 123 RDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQNVKAVFDTAIRVALRP 180
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/166 (30%), Positives = 81/166 (48%), Gaps = 3/166 (1%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
++K+V+LGD GK+ + F + F K T+G F + I L + V +IWD G
Sbjct: 6 QLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGG 65
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKA 149
Q + Y G YDIT+ SF + W VK++ + ++ALVGNK
Sbjct: 66 QTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKI 125
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
DL R + + + + ++NG SAKT D++ F+++A +
Sbjct: 126 DLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEI 171
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 96/202 (47%), Gaps = 23/202 (11%)
Query: 11 SSGQSGGLNNL---ENAGSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTV 66
SSG G NL AG +R VK+VL+GD G GK+ +++ F G F + TV
Sbjct: 8 SSGVDLGTENLYFQSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV 67
Query: 67 GASFLSQTIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NK 124
F + LQ V IWDTAGQ+ Y L PL+Y +D+TSP+SF N
Sbjct: 68 ---FERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNI 124
Query: 125 AQYWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKNG-M 171
W E+ H + + +VG K DL + + V G E A G +
Sbjct: 125 FNRWYPEVN-HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAV 183
Query: 172 FFIETSAKTADNINQLFEEIAK 193
++E SA+ DN++ +F+E A+
Sbjct: 184 AYLECSARLHDNVHAVFQEAAE 205
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 85.9 bits (211), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 91/162 (56%), Gaps = 3/162 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GVGKS + L+F+ +F + T S+ + + D V+ +I DTAG E
Sbjct: 8 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVL--DGEEVQIDILDTAGLE 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHE 153
YAA+ Y+R + IT +SF A + + L+ ++ LVGNK+DL +
Sbjct: 66 DYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLED 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
KR+V ++ AE+ + ++ETSAKT N++++F ++ + +
Sbjct: 126 KRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 167
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 91/175 (52%), Gaps = 13/175 (7%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V +GD VGK+C+++ + +F PT + S +A+ D V +WDTAGQ
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKF-PTDYIPTVFDNFSANVAV-DGQIVNLGLWDTAGQ 67
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y+ L PL YRG + + S S+ N + W+ EL++ +P++ + LVG K DL
Sbjct: 68 EDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRF-APNVPIVLVGTKLDLR 126
Query: 153 EKR--------EVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEEIAKRLPRP 198
+ + + + G E ++ G +IE S+KT N+ +F+ K + +P
Sbjct: 127 DDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP 181
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 85/164 (51%), Gaps = 4/164 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV++G GVGKS + ++ ++ F T+ S+ Q + D T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 63
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
Y+A+ Y R + I + SF ++ +++++ S D+ M LVGNK+DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-P 122
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
R V + + A G+ FIETSAKT ++ F + + + +
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 84.3 bits (207), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 4/164 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV++G GVGKS + ++ ++ F T+ S+ Q + D T +I DTAGQE
Sbjct: 6 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 63
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
Y+A+ Y R + I + SF ++ +++++ S D+ M LVGNK DL
Sbjct: 64 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-P 122
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
R V + + A G+ FIETSAKT ++ F + + + +
Sbjct: 123 SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 83.6 bits (205), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 92/178 (51%), Gaps = 17/178 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG 92
+K V +GD VGK+C+++ + F PT V TV +F + + + TV +WDTAG
Sbjct: 9 IKCVTVGDGAVGKTCLLISYTSNTF-PTDYVPTVFDNFSANVVV--NGATVNLGLWDTAG 65
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADL 151
QE Y L PL YRG + + S S+ N ++ W+ EL KH +P + + LVG K DL
Sbjct: 66 QEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDL 124
Query: 152 HEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEEIAKRLPRP 198
+ ++ + G E + G +IE S+K+ +N+ +F+ + + +P
Sbjct: 125 RDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVLQP 182
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 83.6 bits (205), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE+Y L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 82.8 bits (203), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 72
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 131
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 132 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 173
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 60
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 61 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 119
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 120 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 161
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 94/189 (49%), Gaps = 7/189 (3%)
Query: 11 SSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF 70
SSG G NL S AK+ VKL + G +GVGKS +V+RF+ +F T+ +++
Sbjct: 8 SSGVDLGTENL--YFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 65
Query: 71 LSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVK 130
Q A D V EI DTAGQE + R YDIT SF +
Sbjct: 66 RHQ--ATIDDEVVSMEILDTAGQEDTIQREG-HMRWGEGFVLVYDITDRGSFEEVLPLKN 122
Query: 131 ELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLF 188
L + P ++ + LVGNKADL R+V ++G + A + F E SA T + NI ++F
Sbjct: 123 ILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIF 182
Query: 189 EEIAKRLPR 197
E+ + + R
Sbjct: 183 YELCREVRR 191
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 81.6 bits (200), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 90/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 89/164 (54%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVPTLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV++G GVGKS + ++ ++ F T+ S+ Q + D T +I DTAGQE
Sbjct: 5 KLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
Y+A+ Y R + I + SF + +++++ S D+ M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R V ++ + A G+ +IETSAKT + F + + +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV++G GVGKS + ++ ++ F T+ S+ Q + D T +I DTAGQE
Sbjct: 5 KLVVVGARGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
Y+A+ Y R + I + SF + +++++ S D+ M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R V ++ + A G+ +IETSAKT + F + + +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 80.5 bits (197), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV++G GVGKS + ++ ++ F T+ S+ Q + D T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
Y+A+ Y R + I + SF + +++++ S D+ M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R V ++ + A G+ +IETSAKT + F + + +
Sbjct: 122 ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 51/162 (31%), Positives = 82/162 (50%), Gaps = 4/162 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLV++G GVGKS + ++ ++ F T+ S+ Q + D T +I DTAGQE
Sbjct: 5 KLVVVGAPGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQE 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
Y+A+ Y R + I + SF + +++++ S D+ M LVGNK DL
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-A 121
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R V ++ + A G+ +IETSAKT + F + + +
Sbjct: 122 GRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 11 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 69
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
G E++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 70 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 128
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 129 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 170
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLVL+GD G GK+ V R + G+F+ T+G + + +KF++WDTAG E
Sbjct: 7 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSF-YTNFGEIKFDVWDTAGLE 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
++ L YY +D+TS ++ W ++L + +I + L GNK D+ E
Sbjct: 66 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKE- 123
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R+V A+ I + K + + + SAK+ N + F +A++L
Sbjct: 124 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 5 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 63
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
G E++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 64 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 122
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 123 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 164
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLVL+GD G GK+ V R + G+F+ T+G + + +KF++WDTAG E
Sbjct: 6 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSF-YTNFGEIKFDVWDTAGLE 64
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
++ L YY +D+TS ++ W ++L + +I + L GNK D+ E
Sbjct: 65 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKE- 122
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R+V A+ I + K + + + SAK+ N + F +A++L
Sbjct: 123 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 79.7 bits (195), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 84/161 (52%), Gaps = 4/161 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLVL+GD G GK+ V R + G+F+ T+G + + +KF++WDTAG E
Sbjct: 14 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSF-YTNFGEIKFDVWDTAGLE 72
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
++ L YY +D+TS ++ W ++L + +I + L GNK D+ E
Sbjct: 73 KFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVR-VCENIPIVLCGNKVDVKE- 130
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R+V A+ I + K + + + SAK+ N + F +A++L
Sbjct: 131 RKVKAKT-ITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/168 (32%), Positives = 86/168 (51%), Gaps = 3/168 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+V+LG VGK+ + +FV G+F TV ++ S+ + L + DTAGQ+
Sbjct: 26 KVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTL-GKDEFHLHLVDTAGQD 83
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHE 153
Y+ L + G Y +TS SF + ++L + HG + + LVGNKADL
Sbjct: 84 EYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSP 143
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPS 201
+REV A +G + AE G F+E+SA+ +F ++ + + R S
Sbjct: 144 EREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS 191
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+F+ T+G + + + +KF +WDTA
Sbjct: 9 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
G E++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 68 GLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 126
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 127 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 168
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 17/173 (9%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
++R KLV++GD GK+C+++ +GQF TV ++++ D V+ +WDT
Sbjct: 8 SIRRKLVIVGDGACGKTCLLIVNSKGQFPEVYVPTVFENYVADVEV--DGRRVELALWDT 65
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKA 149
AGQE Y L PL Y + I PDS Q W+ E+ H + + LVG K
Sbjct: 66 AGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEV-LHFCQGVPIILVGCKV 124
Query: 150 DLHE------------KREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189
DL ++ V +Q+G A++ G + E SAKT + ++FE
Sbjct: 125 DLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTGYGVREVFE 177
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 88/164 (53%), Gaps = 4/164 (2%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
++ KLVL+GD G GK+ V R + G+ + T+G + + + +KF +WDTA
Sbjct: 14 VQFKLVLVGDGGTGKTTFVKRHLTGESEKKYVATLGVE-VHPLVFHTNRGPIKFNVWDTA 72
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQE++ L YY +D+TS ++ W ++L + +I + L GNK D+
Sbjct: 73 GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIPIVLCGNKVDI 131
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ R+V A+ + + +KN ++ + SAK+ N + F +A++L
Sbjct: 132 KD-RKVKAKSIVFHRKKNLQYY-DISAKSNYNFEKPFLWLARKL 173
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 63
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 64 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 122
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 182
Query: 200 P 200
P
Sbjct: 183 P 183
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 65
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 66 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 124
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 125 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 184
Query: 200 P 200
P
Sbjct: 185 P 185
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 17/170 (10%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
VK VL+GD VGK+ +V+ + + PT + S +++ D V+ ++ DTAGQ
Sbjct: 21 VKCVLVGDGAVGKTSLVVSYTTNGY-PTEYIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQ 78
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
+ + L PL Y + + SP SF N ++ WV E++ H P + LVG ++DL
Sbjct: 79 DEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCH-CPKAPIILVGTQSDLR 137
Query: 153 E------------KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFE 189
E ++ VP + AE+ +IE SA T N+ ++F+
Sbjct: 138 EDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFD 187
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 200 P 200
P
Sbjct: 181 P 181
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 200 P 200
P
Sbjct: 181 P 181
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/182 (29%), Positives = 85/182 (46%), Gaps = 17/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + DS V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP S+ N W E+ +H P + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEV-RHHCPSTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYA-EKNGMFFIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A E + + ++E SA T + +F+E + + P
Sbjct: 121 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCPQ 180
Query: 200 PS 201
P+
Sbjct: 181 PT 182
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 200 P 200
P
Sbjct: 181 P 181
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 75.1 bits (183), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 200 P 200
P
Sbjct: 181 P 181
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 73.9 bits (180), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 23 NAGSSDAKNLR--VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS 80
N G+ +N + +K+V++GD VGK+C++L F +G+ PT+ V S + ++
Sbjct: 11 NTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNE 69
Query: 81 TTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPD 139
+ +WDTAGQE Y L PL Y + + + SF N + W E+ KH
Sbjct: 70 EFI-LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDT 127
Query: 140 IVMALVGNKADLHE--KREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
LVG K DL + +V Q+G + +K G +IE S+ +N++FE+
Sbjct: 128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 181
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 86/181 (47%), Gaps = 18/181 (9%)
Query: 25 GSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
GSS + ++ +K V++GD VGK+C+++ + F TV ++ + + D V
Sbjct: 1 GSSGSSGMQAIKCVVVGDGAVGKNCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPV 58
Query: 84 KFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVM 142
+WDTAGQE Y L PL Y + + SP SF N W E++ H P+ +
Sbjct: 59 NLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPI 117
Query: 143 ALVGNKADLH----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFE 189
LVG K DL EK+ P G+ A++ G ++E SA T + +F+
Sbjct: 118 ILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFD 177
Query: 190 E 190
E
Sbjct: 178 E 178
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 88/174 (50%), Gaps = 9/174 (5%)
Query: 23 NAGSSDAKNLR--VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS 80
N G+ +N + +K+V++GD VGK+C++L F +G+ PT+ V S + ++
Sbjct: 10 NTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEI-PTAYVPTVFENFSHVMKYKNE 68
Query: 81 TTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPD 139
+ +WDTAGQE Y L PL Y + + + SF N + W E+ KH
Sbjct: 69 EFI-LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEI-KHYIDT 126
Query: 140 IVMALVGNKADLHE--KREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
LVG K DL + +V Q+G + +K G +IE S+ +N++FE+
Sbjct: 127 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEK 180
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 88
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E++ H P+ + LVG K DL
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAG
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 200 P 200
P
Sbjct: 181 P 181
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 71
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 72 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 130
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 131 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 181
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 23 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 80
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 81 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 139
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 140 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 190
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 17/181 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAG
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKRLPRPS 199
EK+ P G+ A++ G ++E SA T + +F+E + + P
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLCPP 180
Query: 200 P 200
P
Sbjct: 181 P 181
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P+ + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPNTPIILVGTKLDLR 120
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 121 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 171
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + DS V +WDTAGQ
Sbjct: 10 IKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVNLGLWDTAGQ 67
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP S+ N W E++ H P + LVG K DL
Sbjct: 68 EDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPIILVGTKLDLR 126
Query: 153 ----------EKREVPAQ--DGIEYA-EKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198
EK+ P G+ A E + + ++E SA T + +F+E + + P
Sbjct: 127 DDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDEAIRAVLCP 185
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 78/159 (49%), Gaps = 4/159 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
++ + G GVGKS +VLRFV+G F + TV ++ Q I+ D + +I DT G
Sbjct: 5 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY-RQVISC-DKSICTLQITDTTGSH 62
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQ--KHGSPDIVMALVGNKADLH 152
++ A+ L Y ITS S + + +++ K I + LVGNK D
Sbjct: 63 QFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDES 122
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
REV + + A F+ETSAK N+ +LF+E+
Sbjct: 123 PSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 11 SSGQSGGLNNL-------ENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRF--VRGQFDPT 61
SSG G NL ++ SS++ N ++VL+G+ GVGKS + F V D
Sbjct: 8 SSGVDLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSD 67
Query: 62 SKVTVGASFLSQTIAL--QDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSP 119
+V +G +T+ + + +T + ++W+ G+ + L + Y IT
Sbjct: 68 CEV-LGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDR 124
Query: 120 DSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178
SF KA +L++ + DI + LVGNK+DL REV +G A FIETSA
Sbjct: 125 ASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSA 184
Query: 179 KTADNINQLFEEIAK--RLPRPSP 200
N+ +LFE I + RL R S
Sbjct: 185 AVQHNVKELFEGIVRQVRLRRDSK 208
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 82/180 (45%), Gaps = 17/180 (9%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
G S +K V++GD VGK+C+++ + F TV ++ + + DS V
Sbjct: 2 GGSGGSMQAIKCVVVGDVAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DSKPVN 59
Query: 85 FEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMA 143
+WDTAGQE Y L PL Y + + SP S+ N W E++ H P +
Sbjct: 60 LGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRHH-CPSTPII 118
Query: 144 LVGNKADLH----------EKREVPAQ--DGIEYA-EKNGMFFIETSAKTADNINQLFEE 190
LVG K DL EK+ P G+ A E + + ++E SA T + +F+E
Sbjct: 119 LVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEIDSVKYLECSALTQRGLKTVFDE 178
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 76/149 (51%), Gaps = 3/149 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++F++ F T+ S+ Q + D + +I DTAGQE + A+ Y R
Sbjct: 18 KSALTIQFIQSYFVTDYDPTIEDSYTKQCVI--DDRAARLDILDTAGQEEFGAMREQYMR 75
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD-IVMALVGNKADLHEKREVPAQDGIE 164
+ +T SF + + +++ + D M L+GNKADL +R+V ++G +
Sbjct: 76 TGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQ 135
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAK 193
A + + ++E SAK N++Q F E+ +
Sbjct: 136 LARQLKVTYMEASAKIRMNVDQAFHELVR 164
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 82/175 (46%), Gaps = 25/175 (14%)
Query: 34 VKLVLLGDSGVGKSCIVLRF----VRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
+K V++GD VGK+C+++ + + G++ PT A+ + D V +WD
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNALPGEYIPTVFDNYSAN------VMVDGKPVNLGLWD 84
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNK 148
TAGQE Y L PL Y + + SP SF N W E++ H P+ + LVG K
Sbjct: 85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTK 143
Query: 149 ADLH----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
DL EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 144 LDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 62
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E++ H P + LVG K DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPHTPILLVGTKLDLR 121
Query: 153 EKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEE 190
+ ++ + G+ A + G + ++E SA T + +F+E
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 62
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E++ H P + LVG K DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPHTPILLVGTKLDLR 121
Query: 153 EKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEE 190
+ ++ + G+ A + G + ++E SA T + +F+E
Sbjct: 122 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 172
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF ++ +++++ S D+ M LVGNK+DL R V + +
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQD 133
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
A G+ FIETSAKT ++ F + + + +
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 76/153 (49%), Gaps = 4/153 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 17 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 74
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF ++ +++++ S D+ M LVGNK+DL R V + +
Sbjct: 75 TGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDL-PSRTVDTKQAQD 133
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
A G+ FIETSAKT ++ F + + + +
Sbjct: 134 LARSYGIPFIETSAKTRQGVDDAFYTLVREIRK 166
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E+ +H P + LVG K DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEV-RHHCPHTPILLVGTKLDLR 120
Query: 153 EKRE------------VPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEE 190
+ ++ + G+ A + G + ++E SA T + +F+E
Sbjct: 121 DDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQRGLKTVFDE 171
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAG
Sbjct: 31 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 88
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E++ H P+ + LVG K DL
Sbjct: 89 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 147
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 148 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 198
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 86/184 (46%), Gaps = 18/184 (9%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
AK L +K V++GD VGK+C+++ + F TV ++ + + D V +W
Sbjct: 152 AKEL-IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLW 208
Query: 89 DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGN 147
DTAG E Y L PL Y + + SP SF+ + W E+ +H P+ + LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGT 267
Query: 148 KADLH----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEEIAKR 194
K DL EK+ P G+ A++ G ++E SA T + +F+E +
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRA 327
Query: 195 LPRP 198
+ P
Sbjct: 328 VLCP 331
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAG
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGL 64
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N W E++ H P+ + LVG K DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLR 123
Query: 153 ----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 124 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 174
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
AK L +K V++GD VGK+C+++ + F TV ++ + + D V +W
Sbjct: 152 AKEL-IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLW 208
Query: 89 DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGN 147
DTAG E Y L PL Y + + SP SF+ + W E+ +H P+ + LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGT 267
Query: 148 KADLH----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
K DL EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 9/184 (4%)
Query: 15 SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
S G NL G ++ KLV++G GVGKS + ++ ++ F T+ S+ Q
Sbjct: 8 SSGRENLYFQGMTE-----YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62
Query: 75 IALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK 134
+ D T +I DTAG E Y+A+ Y R + I + SF ++ +++++
Sbjct: 63 VI--DGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKR 120
Query: 135 -HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193
S D+ M LVGNK DL R V + + A G+ FIETSAKT ++ F + +
Sbjct: 121 VKDSEDVPMVLVGNKCDL-PSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVR 179
Query: 194 RLPR 197
+ +
Sbjct: 180 EIRK 183
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 3/149 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++F++ F T+ S+ I D + +I DTAGQE + A+ Y R
Sbjct: 22 KSALTIQFIQSYFVSDYDPTIEDSYTK--ICSVDGIPARLDILDTAGQEEFGAMREQYMR 79
Query: 106 GXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I SFN+ + + + L+ D + LVGNKADL +R+VP +
Sbjct: 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASA 139
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAK 193
+ + + + E SAK N+++ FE++ +
Sbjct: 140 FGASHHVAYFEASAKLRLNVDEAFEQLVR 168
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 18/176 (10%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
AK L +K V++GD VGK+C+++ + F TV ++ + + D V +W
Sbjct: 152 AKEL-IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLW 208
Query: 89 DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGN 147
DTAG E Y L PL Y + + SP SF+ + W E+ +H P+ + LVG
Sbjct: 209 DTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEV-RHHCPNTPIILVGT 267
Query: 148 KADLH----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKTADNINQLFEE 190
K DL EK+ P G+ A++ G ++E SA T + +F+E
Sbjct: 268 KLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDE 323
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 89/182 (48%), Gaps = 9/182 (4%)
Query: 15 SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
S G NL G ++ KLV++G GVGKS + ++ ++ F T+ S+ Q
Sbjct: 8 SSGRENLYFQGMTE-----YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQV 62
Query: 75 IALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK 134
+ D T +I DTAGQE Y+A+ Y R + I + SF + +++++
Sbjct: 63 VI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKR 120
Query: 135 -HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193
S D+ M LVGNK DL R V + E A+ G+ FIETSAKT + F + +
Sbjct: 121 VKDSDDVPMVLVGNKCDL-PTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVR 179
Query: 194 RL 195
+
Sbjct: 180 EI 181
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 77/158 (48%), Gaps = 3/158 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+ +LG VGKS + ++FV GQF ++ T+ +F ++ I + + ++ DTAGQ+
Sbjct: 6 KIAILGYRSVGKSSLTIQFVEGQFVDSADPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 63
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
Y+ Y Y +TS SF + K L G I + LVGNK DLH
Sbjct: 64 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 123
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
+R + ++G AE F+E+SAK +F I
Sbjct: 124 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 161
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 89/192 (46%), Gaps = 19/192 (9%)
Query: 25 GSSDAKNLR-VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
GSS + ++ +K V++GD VGK+C+++ + +F TV ++ + + T+
Sbjct: 1 GSSGSSGMQTIKCVVVGDGAVGKNCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTL 60
Query: 84 KFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVM 142
++DTAGQE Y L PL Y + + SP SF N + WV E+ H P
Sbjct: 61 G--LFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPF 117
Query: 143 ALVGNKADLH------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFE 189
LVG + DL EK Q I E AEK + ++E SA T + +F+
Sbjct: 118 LLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFD 177
Query: 190 E-IAKRLPRPSP 200
E I L P P
Sbjct: 178 EAILAALEPPEP 189
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+ +LG VGKS + ++FV GQF + T+ +F ++ I + + ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
Y+ Y Y +TS SF + K L G I + LVGNK DLH
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
+R + ++G AE F+E+SAK +F I
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 23 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 80
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 81 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 139
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 140 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 170
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDECDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK+DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+ +LG VGKS + ++FV GQF + T+ +F ++ I + + ++ DTAGQ+
Sbjct: 8 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 65
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
Y+ Y Y +TS SF + K L G I + LVGNK DLH
Sbjct: 66 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
+R + ++G AE F+E+SAK +F I
Sbjct: 126 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 163
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 3/158 (1%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+ +LG VGKS + ++FV GQF + T+ +F ++ I + + ++ DTAGQ+
Sbjct: 3 KIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQD 60
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHE 153
Y+ Y Y +TS SF + K L G I + LVGNK DLH
Sbjct: 61 EYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 120
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
+R + ++G AE F+E+SAK +F I
Sbjct: 121 ERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRI 158
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 137
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 137
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 199 SP 200
P
Sbjct: 181 EP 182
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 63
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 122
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 182
Query: 199 SP 200
P
Sbjct: 183 EP 184
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 64
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 123
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 124 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 183
Query: 199 SP 200
P
Sbjct: 184 EP 185
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 7 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 64
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 65 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 123
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 124 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 183
Query: 199 SP 200
P
Sbjct: 184 EP 185
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 14 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 71
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 72 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 130
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 131 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 190
Query: 199 SP 200
P
Sbjct: 191 EP 192
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 11 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 68
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 69 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 127
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 128 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 187
Query: 199 SP 200
P
Sbjct: 188 EP 189
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 199 SP 200
P
Sbjct: 181 EP 182
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 5 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 62
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 63 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 121
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 122 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 181
Query: 199 SP 200
P
Sbjct: 182 EP 183
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Query: 35 KLVLLGDSGVGKSCIVLRF--VRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDT 90
++VL+G+ GVGKS + F V D +V +G +T+ + + +T + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWEN 66
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKA 149
G+ + L + Y IT SF KA +L++ + DI + LVGNK+
Sbjct: 67 KGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK--RLPRPSP 200
DL REV +G A FIETSA N+ +LFE I + RL R S
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEESYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 199 SP 200
P
Sbjct: 181 EP 182
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVEKYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 84/173 (48%), Gaps = 10/173 (5%)
Query: 35 KLVLLGDSGVGKSCIVLRF--VRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDT 90
++VL+G+ GVGKS + F V D +V +G +T+ + + +T + ++W+
Sbjct: 8 RVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWEN 66
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKA 149
G+ + L + Y IT SF KA +L++ + DI + LVGNK+
Sbjct: 67 KGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKS 124
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK--RLPRPSP 200
DL REV +G A FIETSA N+ +LFE I + RL R S
Sbjct: 125 DLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRRDSK 177
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK+DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + F TV ++ + + D V +WDTAGQ
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMV--DGKPVNLGLWDTAGQ 63
Query: 94 ERYAALAPLYYRGXXXXXXXYDIT-------------------SPDSF-NKAQYWVKELQ 133
E Y L PL Y DIT SP SF N W E++
Sbjct: 64 EDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSLVSPASFENVRAKWYPEVR 123
Query: 134 KHGSPDIVMALVGNKADLH----------EKREVPAQ--DGIEYAEKNGMF-FIETSAKT 180
H P+ + LVG K DL EK+ P G+ A++ G ++E SA T
Sbjct: 124 HH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 182
Query: 181 ADNINQLFEEIAKRLPRPSP 200
+ +F+E + + P P
Sbjct: 183 QRGLKTVFDEAIRAVLCPPP 202
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDKYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 83/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDVAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 199 SP 200
P
Sbjct: 181 EP 182
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDEYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F P+ V + T+ + ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPTVFDNYAVTVXI-GGEPYTLGLFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 199 SP 200
P
Sbjct: 181 EP 182
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEFDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F ++ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 22 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 79
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 80 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 138
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 139 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 169
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREF 163
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 65
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 124
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 175
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/174 (31%), Positives = 84/174 (48%), Gaps = 10/174 (5%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRF--VRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFE 86
N ++VL+G+ GVGKS + F V D +V +G +T+ + + +T + +
Sbjct: 4 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV-LGEDTYERTLMVDGESATIILLD 62
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALV 145
+W+ G+ + L + Y IT SF KA +L++ + DI + LV
Sbjct: 63 MWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILV 120
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK--RLPR 197
GNK+DL REV +G A FIETSA N+ +LFE I + RL R
Sbjct: 121 GNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 174
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 63
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 64 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 122
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 123 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 173
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGN+ DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNRCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 85/174 (48%), Gaps = 19/174 (10%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDT 90
L +K V++GD VGK+C+++ + F TV + +S T+ ++DT
Sbjct: 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVG---GKQYLLGLYDT 73
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKA 149
AGQE Y L PL Y + + +P SF N + WV EL+++ +P++ L+G +
Sbjct: 74 AGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQI 132
Query: 150 DLHE------------KREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEE 190
DL + ++ + + G + A++ G ++E SA T + +F+E
Sbjct: 133 DLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDE 186
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
K+ + ++ ++ F T+ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KNALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 79/171 (46%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQRGLKNVFDE 171
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F ++ S+ Q + D T +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPSIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DT GQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTGGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DT GQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTTGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG E Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGHEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 73/151 (48%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG+E Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGKEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F P+ V + T+ + ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKF-PSEYVPAVFDNYAVTVMI-GGEPYTLGLFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAG
Sbjct: 8 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGL 65
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 66 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 124
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 125 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 184
Query: 199 SP 200
P
Sbjct: 185 EP 186
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D +I DTAGQE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGEICLLDILDTAGQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG E Y+A+ Y R
Sbjct: 21 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMR 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 79 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 137
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 138 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 168
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 52/171 (30%), Positives = 77/171 (45%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLR--DTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 82/182 (45%), Gaps = 18/182 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + +F TV ++ + + T+ ++DTAG
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGL 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE-IAKRLPRP 198
EK Q I E AEK + ++E SA T + +F+E I L P
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEPP 180
Query: 199 SP 200
P
Sbjct: 181 EP 182
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTA QE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIW 88
+N++ K+V++GDS GK+ ++ F + F TV F + T + + D+ ++ +W
Sbjct: 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLW 81
Query: 89 DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGN 147
DT+G Y + PL Y +DI+ P++ + + W E+Q+ P+ M LVG
Sbjct: 82 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 140
Query: 148 KADL------------HEKREVPAQDGIEYAEKNG-MFFIETSAKTADN 183
K+DL H + V G A++ G +IE SA ++N
Sbjct: 141 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 189
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTA QE Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAAQEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKXDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG E Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGVEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG E Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGLEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG E Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGGEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIW 88
+N++ K+V++GDS GK+ ++ F + F TV F + T + + D+ ++ +W
Sbjct: 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLW 60
Query: 89 DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGN 147
DT+G Y + PL Y +DI+ P++ + + W E+Q+ P+ M LVG
Sbjct: 61 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 119
Query: 148 KADL------------HEKREVPAQDGIEYAEKNG-MFFIETSAKTADN 183
K+DL H + V G A++ G +IE SA ++N
Sbjct: 120 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 168
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG E Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGIEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/171 (29%), Positives = 78/171 (45%), Gaps = 17/171 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K V++GD VGK+C+++ + + TV ++ + + T+ ++DTAGQ
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKLPSEYVPTVFDNYAVTVMIGGEPYTLG--LFDTAGQ 61
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLH 152
E Y L PL Y + + SP SF N + WV E+ H P LVG + DL
Sbjct: 62 EDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLR 120
Query: 153 ------EKREVPAQDGI--EYAEK-----NGMFFIETSAKTADNINQLFEE 190
EK Q I E AEK + ++E SA T + +F+E
Sbjct: 121 DDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDE 171
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 82/169 (48%), Gaps = 19/169 (11%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIW 88
+N++ K+V++GDS GK+ ++ F + F TV F + T + + D+ ++ +W
Sbjct: 20 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV---FENYTASFEIDTQRIELSLW 76
Query: 89 DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGN 147
DT+G Y + PL Y +DI+ P++ + + W E+Q+ P+ M LVG
Sbjct: 77 DTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGC 135
Query: 148 KADL------------HEKREVPAQDGIEYAEKNG-MFFIETSAKTADN 183
K+DL H + V G A++ G +IE SA ++N
Sbjct: 136 KSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN 184
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAG E Y+A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETXLLDILDTAGGEEYSAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/151 (28%), Positives = 72/151 (47%), Gaps = 4/151 (2%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++ ++ F T+ S+ Q + D T +I DTAGQE +A+ Y R
Sbjct: 16 KSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEASAMRDQYMR 73
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIE 164
+ I + SF + +++++ S D+ M LVGNK DL R V ++ +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDL-AARTVESRQAQD 132
Query: 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
A G+ +IETSAKT + F + + +
Sbjct: 133 LARSYGIPYIETSAKTRQGVEDAFYTLVREI 163
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 5/148 (3%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS +VLRFV+G F T T+ ++ Q I+ D + +I DT G ++ A+ L
Sbjct: 21 KSSLVLRFVKGTFRDTYIPTIEDTY-RQVISC-DKSVCTLQITDTTGSHQFPAMQRLSIS 78
Query: 106 GXXXXXXXYDITSPDSFNKAQYWVKEL-QKHGS-PDIVMALVGNKADLHEKREVPAQDGI 163
+ +TS S + K + Q GS DI + LVGNK D +REV ++
Sbjct: 79 KGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQ 137
Query: 164 EYAEKNGMFFIETSAKTADNINQLFEEI 191
A++ F+ETSAK N+ +LF+E+
Sbjct: 138 AVAQEWKCAFMETSAKMNYNVKELFQEL 165
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 51/155 (32%), Positives = 83/155 (53%), Gaps = 11/155 (7%)
Query: 46 KSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAP 101
KS + ++FV G F DPT + F + I + S +V EI DTAG E++A++
Sbjct: 16 KSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRD 69
Query: 102 LYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPAQ 160
LY + Y + + SF + ++ + + V + LVGNK DL +REV +
Sbjct: 70 LYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSS 129
Query: 161 DGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+G AE+ G F+ETSAK+ +++LF EI +++
Sbjct: 130 EGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 62.4 bits (150), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 76/159 (47%), Gaps = 15/159 (9%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPTSKVTVGASFLSQTIALQDST-TVKFEI 87
LR K+ ++G++ VGKS ++ F +F +T G + + + D+T +V+ +
Sbjct: 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFL 77
Query: 88 WDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD----IVMA 143
DTAG + Y Y+ G +D++S +SF + W EL K PD +
Sbjct: 78 LDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWF-ELLKSARPDRERPLRAV 136
Query: 144 LVGNKADL----HEKREVPAQDGIEYAEKNGMFFIETSA 178
LV NK DL H+ R AQD +A N + F + SA
Sbjct: 137 LVANKTDLPPQRHQVRLDMAQD---WATTNTLDFFDVSA 172
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++F + F P T+ S+L T D+ ++ DTAGQE ++A+ Y R
Sbjct: 31 KSALTIQFFQKIFVPEYDPTIEDSYLKHTEI--DNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 106 GXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161
Y +T SF Q ++ + P M LV NK DL R+V
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVDLMHLRKVTRDQ 145
Query: 162 GIEYAEKNGMFFIETSAKTAD-NINQLFEEIAK 193
G E A K + +IETSAK N+++ F ++ +
Sbjct: 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 10/153 (6%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++F + F P T+ S+L T D+ ++ DTAGQE ++A+ Y R
Sbjct: 26 KSALTIQFFQKIFVPDYDPTIEDSYLKHTEI--DNQWAILDVLDTAGQEEFSAMREQYMR 83
Query: 106 GXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161
Y +T SF Q ++ + P M LV NK DL R+V
Sbjct: 84 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVDLMHLRKVTRDQ 140
Query: 162 GIEYAEKNGMFFIETSAKTAD-NINQLFEEIAK 193
G E A K + +IETSAK N+++ F ++ +
Sbjct: 141 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 5/158 (3%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDTAG 92
++VLLGD GVGK+ + F G+ + +G +T+ + +D+T V + W+
Sbjct: 6 RVVLLGDPGVGKTSLASLFA-GKQERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEK 64
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADL 151
++ + +G Y I SF A +L++ H + + + LVGNKADL
Sbjct: 65 LDKSWSQESCL-QGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADL 123
Query: 152 HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189
REV ++G A FIETSA N+ +LFE
Sbjct: 124 ARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFE 161
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 16/176 (9%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDTAGQ 93
K++LLG GVGKS + R G D G ++ S + ++++ + ++IW+ G
Sbjct: 9 KVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 67
Query: 94 E----RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNK 148
A+ Y Y +T SF KA +L++ + D+ + LVGNK
Sbjct: 68 RWLPGHCMAMGDAYV-------IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK--RLPRPSPSS 202
+DL REV +G A FIETSA N+ LFE + + RL R S +
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDSKEA 176
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/173 (30%), Positives = 80/173 (46%), Gaps = 16/173 (9%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDTAGQ 93
K++LLG GVGKS + R G D G ++ S + ++++ + ++IW+ G
Sbjct: 9 KVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 67
Query: 94 E----RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNK 148
A+ Y Y +T SF KA +L++ + D+ + LVGNK
Sbjct: 68 RWLPGHCMAMGDAYV-------IVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 120
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK--RLPRPS 199
+DL REV +G A FIETSA N+ LFE + + RL R S
Sbjct: 121 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS 173
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/167 (29%), Positives = 78/167 (46%), Gaps = 14/167 (8%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF-LSQTIALQDSTTVKFEIWDTAGQ 93
K++LLG GVGKS + R G D G ++ S + ++++ + ++IW+ G
Sbjct: 4 KVLLLGAPGVGKSALA-RIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGG 62
Query: 94 E----RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNK 148
A+ Y Y +T SF KA +L++ + D+ + LVGNK
Sbjct: 63 RWLPGHCMAMGDAY-------VIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNK 115
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+DL REV +G A FIETSA N+ LFE + +++
Sbjct: 116 SDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI 162
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/204 (27%), Positives = 96/204 (47%), Gaps = 22/204 (10%)
Query: 15 SGGLNNLENAGSSDAKNL-RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ 73
S G NL G + + R KLVL+GD GK+ ++ + + T TV F +
Sbjct: 8 SSGRENLYFQGRAPQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENY 64
Query: 74 TIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKE 131
T L+ + V+ +WDT+G Y + PL Y +DI+ P++ + A + W E
Sbjct: 65 TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTE 124
Query: 132 LQKHGSPDIVMALVGNKADL-----------HEKR-EVPAQDGIEYAEKNGM-FFIETSA 178
+ + P + L+G K DL H+K+ + + G A++ G ++E SA
Sbjct: 125 ILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183
Query: 179 KTAD-NINQLFEEIAKR-LPRPSP 200
T++ +I+ +F + L +PSP
Sbjct: 184 FTSEKSIHSIFRTASMLCLNKPSP 207
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 70/153 (45%), Gaps = 10/153 (6%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++F + F T+ S+L T D+ ++ DTAGQE ++A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDDYDPTIEDSYLKHTEI--DNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 106 GXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161
Y +T SF Q ++ + P M LV NK DL R+V
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVDLMHLRKVTRDQ 145
Query: 162 GIEYAEKNGMFFIETSAKTAD-NINQLFEEIAK 193
G E A K + +IETSAK N+++ F ++ +
Sbjct: 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 21/185 (11%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTA 91
R KLVL+GD GK+ ++ + + T TV F + T L+ + V+ +WDT+
Sbjct: 10 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENYTACLETEEQRVELSLWDTS 66
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKAD 150
G Y + PL Y +DI+ P++ + A + W E+ + P + L+G K D
Sbjct: 67 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTD 125
Query: 151 L-----------HEKR-EVPAQDGIEYAEKNGM-FFIETSAKTAD-NINQLFEEIAKR-L 195
L H+K+ + + G A++ G ++E SA T++ +I+ +F + L
Sbjct: 126 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 185
Query: 196 PRPSP 200
+PSP
Sbjct: 186 NKPSP 190
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 57.0 bits (136), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/185 (27%), Positives = 89/185 (48%), Gaps = 21/185 (11%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTA 91
R KLVL+GD GK+ ++ + + T TV F + T L+ + V+ +WDT+
Sbjct: 11 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV---FENYTACLETEEQRVELSLWDTS 67
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKAD 150
G Y + PL Y +DI+ P++ + A + W E+ + P + L+G K D
Sbjct: 68 GSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTD 126
Query: 151 L-----------HEKR-EVPAQDGIEYAEKNGM-FFIETSAKTAD-NINQLFEEIAKR-L 195
L H+K+ + + G A++ G ++E SA T++ +I+ +F + L
Sbjct: 127 LRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCL 186
Query: 196 PRPSP 200
+PSP
Sbjct: 187 NKPSP 191
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 10/153 (6%)
Query: 46 KSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105
KS + ++F + F T+ S+ T D+ ++ DTAGQE ++A+ Y R
Sbjct: 31 KSALTIQFFQKIFVDEYDPTIEDSYRKHTEI--DNQWAILDVLDTAGQEEFSAMREQYMR 88
Query: 106 GXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161
Y +T SF Q ++ + P M LV NK DL R+V
Sbjct: 89 TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFP---MILVANKVDLMHLRKVTRDQ 145
Query: 162 GIEYAEKNGMFFIETSAKTAD-NINQLFEEIAK 193
G E A K + +IETSAK N+++ F ++ +
Sbjct: 146 GKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 178
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 82/188 (43%), Gaps = 16/188 (8%)
Query: 15 SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
S G NL G D K++L+G+SGVGKS + F Q D + +
Sbjct: 8 SSGRENLYFQGQKDGI---FKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERR 64
Query: 75 IAL--QDSTTVKFEIW---DTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV 129
I + ++ T V ++IW D G R L + +T SF+K +
Sbjct: 65 IMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQT-----GDAFLIVFSVTDRRSFSKVPETL 119
Query: 130 KELQKHGSP--DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187
L+ G P D+ + LVGNK+DL REV ++G A IETSA N +L
Sbjct: 120 LRLRA-GRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTREL 178
Query: 188 FEEIAKRL 195
FE +++
Sbjct: 179 FEGAVRQI 186
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDTAG 92
K++LLG+SGVGKS + F Q D ++ + I + ++ T + ++IW+
Sbjct: 14 KVMLLGESGVGKSTLAGTFGGLQGDNAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 73
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP--DIVMALVGNKAD 150
+ L + + +T SF+K + L+ G P D+ + LVGNK+D
Sbjct: 74 AGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSD 130
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
L REV ++G A IETSA N +LFE +++
Sbjct: 131 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 175
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIAL--QDSTTVKFEIWDTAG 92
K++L+G+SGVGKS + F Q D ++ + I + ++ T + ++IW+
Sbjct: 4 KVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGD 63
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP--DIVMALVGNKAD 150
+ L + + +T SF+K + L+ G P D+ + LVGNK+D
Sbjct: 64 AGGW--LQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRA-GRPHHDLPVILVGNKSD 120
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
L REV ++G A IETSA N +LFE +++
Sbjct: 121 LARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQI 165
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 83/197 (42%), Gaps = 32/197 (16%)
Query: 15 SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASF 70
S G NL G L V L +LG G GKS + ++F+ +F DP + T +
Sbjct: 8 SSGRENLYFQGP-----LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE- 61
Query: 71 LSQTIALQDSTTVKFEIWDTA------GQERYAALAPLYYRGXXXXXXXYDITSPDSFNK 124
+T+ D V + DTA ERY A + Y + S SF+
Sbjct: 62 --ETV---DHQPVHLRVMDTADLDTPRNCERYLNWAHAF-------LVVYSVDSRQSFDS 109
Query: 125 AQYWVKELQKHGSP---DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT- 180
+ +++ L H I L+GNK D+ + R+V +G+ A + G F E SA
Sbjct: 110 SSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD 169
Query: 181 ADNINQLFEEIAKRLPR 197
+++ +F E + R
Sbjct: 170 FEHVQHVFHEAVREARR 186
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 57/122 (46%), Gaps = 7/122 (5%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N +++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD
Sbjct: 320 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 373
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKA 149
GQ++ L YY G D D ++A Q + + D ++ + NK
Sbjct: 374 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQ 433
Query: 150 DL 151
DL
Sbjct: 434 DL 435
>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By
Human Arf6-Gtp
pdb|2A5F|A Chain A, Cholera Toxin A1 Subunit Bound To Its Substrate, Nad+, And
Its Human Protein Activator, Arf6
pdb|2J5X|A Chain A, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
pdb|2J5X|B Chain B, Structure Of The Small G Protein Arf6 In Complex With
Gtpgammas
Length = 175
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N +++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 64
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVG 146
GQ++ L YY G D D ++A+ +EL + D ++ +
Sbjct: 65 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFA 121
Query: 147 NKADL------HEKRE 156
NK DL HE +E
Sbjct: 122 NKQDLPDAMKPHEIQE 137
>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp
Length = 174
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 19/136 (13%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N +++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD
Sbjct: 10 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 63
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVG 146
GQ++ L YY G D D ++A+ +EL + D ++ +
Sbjct: 64 GGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFA 120
Query: 147 NKADL------HEKRE 156
NK DL HE +E
Sbjct: 121 NKQDLPDAMKPHEIQE 136
>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex
pdb|4FME|F Chain F, Espg-Rab1-Arf6 Complex
Length = 160
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQ 54
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGNKA 149
++ L YY G D D ++A+ +EL + D ++ + NK
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQ 111
Query: 150 DL------HEKRE 156
DL HE +E
Sbjct: 112 DLPDAMKPHEIQE 124
>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp
pdb|3N5C|B Chain B, Crystal Structure Of Arf6delta13 Complexed With Gdp
Length = 162
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD GQ
Sbjct: 1 MRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQ 54
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGNKA 149
++ L YY G D D ++A+ +EL + D ++ + NK
Sbjct: 55 DKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFANKQ 111
Query: 150 DL------HEKRE 156
DL HE +E
Sbjct: 112 DLPDAMKPHEIQE 124
>pdb|3DPU|A Chain A, Roccor Domain Tandem Of Rab Family Protein (Roco)
pdb|3DPU|B Chain B, Roccor Domain Tandem Of Rab Family Protein (Roco)
Length = 535
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 31/177 (17%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTI----ALQDSTTVK---FE 86
+K+ L+GD GK+ ++ + + FDP T G + +++ L++ +K F
Sbjct: 42 IKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFH 101
Query: 87 IWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHG--SPDIVMAL 144
WD GQE A + D + DS NK YW++ ++K+G SP IV
Sbjct: 102 FWDFGGQEIMHASHQFFMTRSSVYMLLLD-SRTDS-NK-HYWLRHIEKYGGKSPVIV--- 155
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMF------FIETSAKTADNINQLFEEIAKRL 195
V NK D E P+ + IE + N F F S K D + E IAK L
Sbjct: 156 VMNKID-----ENPSYN-IEQKKINERFPAIENRFHRISCKNGDGV----ESIAKSL 202
>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex
Length = 162
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 13/121 (10%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
+++ LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD GQ+
Sbjct: 2 RILXLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVGGQD 55
Query: 95 RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGNKAD 150
+ L YY G D D ++A+ +EL + D ++ + NK D
Sbjct: 56 KIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREXRDAIILIFANKQD 112
Query: 151 L 151
L
Sbjct: 113 L 113
>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l)
Length = 175
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 19/136 (13%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N +++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD
Sbjct: 11 NKEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDV 64
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVG 146
G ++ L YY G D D ++A+ +EL + D ++ +
Sbjct: 65 GGLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFA 121
Query: 147 NKADL------HEKRE 156
NK DL HE +E
Sbjct: 122 NKQDLPDAMKPHEIQE 137
>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|B Chain B, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
pdb|2W83|E Chain E, Crystal Structure Of The Arf6 Gtpase In Complex With A
Specific Effector, Jip4
Length = 165
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+ +++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD
Sbjct: 2 MEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVG 55
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGN 147
G ++ L YY G D D ++A+ +EL + D ++ + N
Sbjct: 56 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 112
Query: 148 KADL------HEKRE 156
K DL HE +E
Sbjct: 113 KQDLPDAMKPHEIQE 127
>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|C Chain C, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|E Chain E, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
pdb|3VHX|G Chain G, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like
Protein 1) Complex
Length = 172
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
+ +++++LG GK+ I+ + GQ T+ TVG F +T+ ++ VKF +WD
Sbjct: 1 MEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKN---VKFNVWDVG 54
Query: 92 GQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK----HGSPDIVMALVGN 147
G ++ L YY G D D ++A+ +EL + D ++ + N
Sbjct: 55 GLDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEAR---QELHRIINDREMRDAIILIFAN 111
Query: 148 KADL------HEKRE 156
K DL HE +E
Sbjct: 112 KQDLPDAMKPHEIQE 126
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++L L+G GK+ V GQF+ TVG + T V ++WD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 77
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPD----SFNKAQYWVKELQKHGSPDIVMALVGNKA 149
R+ ++ Y RG D + S N+ + + Q G P +V+ GNK
Sbjct: 78 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 150 DL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185
DL +++E+ + + + + S K DNI+
Sbjct: 135 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173
>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2
(Scarf2) Complexed With Gdp-3'p At 1.6a Resolution
Length = 181
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 75/173 (43%), Gaps = 10/173 (5%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N ++++++G G GK+ ++ + G+ T+ T+G F +T+ ++ + F +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVETVQYKN---ISFTVWDV 68
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKA 149
GQ+R +L YYR D +A+ ++ L + + V + NK
Sbjct: 69 GGQDRIRSLWRHYYRNTEGVIFVIDSNDRSRIGEAREVMQRMLNEDELRNAVWLVFANKQ 128
Query: 150 DLHEKR---EVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPS 199
DL E E+ + G+ F T A + + + + E ++ L S
Sbjct: 129 DLPEAMSAAEITEKLGLHSIRNRPWFIQSTCATSGEGLYEGLEWLSNNLKNQS 181
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 66/159 (41%), Gaps = 15/159 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++L L+G GK+ V GQF+ TVG + T V ++WD GQ
Sbjct: 32 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKIT-----KGNVTIKLWDIGGQ 86
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPD----SFNKAQYWVKELQKHGSPDIVMALVGNKA 149
R+ ++ Y RG D + S N+ + + Q G P +V+ GNK
Sbjct: 87 PRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVL---GNKR 143
Query: 150 DL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185
DL +++E+ + + + + S K DNI+
Sbjct: 144 DLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 182
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++L L+G GK+ V GQF TVG + T V +IWD GQ
Sbjct: 23 MELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVT-----KGNVTIKIWDIGGQ 77
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPD----SFNKAQYWVKELQKHGSPDIVMALVGNKA 149
R+ ++ Y RG D + S N+ + + Q G P +V+ GNK
Sbjct: 78 PRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHNLLDKPQLQGIPVLVL---GNKR 134
Query: 150 DL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185
DL +++++ + + + + S K DNI+
Sbjct: 135 DLPNALDEKQLIEKMNLSAIQDREICCYSISCKEKDNID 173
>pdb|3RD1|A Chain A, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
pdb|3RD1|B Chain B, Structure Of An Adp Ribosylation Factor From Entamoeba
Histolytica Hm- 1:imss Bound To Mg-Gdp
Length = 178
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 72/154 (46%), Gaps = 17/154 (11%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 18 MRILMVGLDAAGKTSILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 71
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPD----IVMALVGNKA 149
++ L YY+ D D +A+ +EL K + D ++ + NK
Sbjct: 72 DKIRPLWRHYYQNTQAIIFVVDSNDRDRIGEAR---EELMKMLNEDEMRNAILLVFANKH 128
Query: 150 DLHEKR---EVPAQDGIEYAEKNGMFFIETSAKT 180
DL + EV + G++ KN ++ +TS T
Sbjct: 129 DLPQAMSISEVTEKLGLQTI-KNRKWYCQTSCAT 161
>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein,
Gdp- Bound
Length = 181
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N ++++++G G GK+ ++ + G+ T+ T+G F +T+ ++ + F +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVETVQYKN---ISFTVWDV 68
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVG 146
GQ+R +L YYR D +A Q + E + + +V A
Sbjct: 69 GGQDRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFA--- 125
Query: 147 NKADLHEKR---EVPAQDGIEYAEKNGMFFIETSAKTA 181
NK DL E E+ + G+ ++ +N +FI+ + T+
Sbjct: 126 NKQDLPEAMSAAEITEKLGL-HSIRNRPWFIQATCATS 162
>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
pdb|3TJZ|D Chain D, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core
Complex
Length = 164
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 70/159 (44%), Gaps = 25/159 (15%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G G GK+ ++ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 1 MRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIG--FNVETVQYKN---ISFTVWDVGGQ 54
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKA----QYWVKELQKHGSPDIVMALVGNKA 149
+R +L YYR D +A Q + E + + +V A NK
Sbjct: 55 DRIRSLWRHYYRNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELRNAAWLVFA---NKQ 111
Query: 150 DLHEKREVPAQDGIEYAEKNGM-------FFIETSAKTA 181
DL E A E EK G+ +FI+ + T+
Sbjct: 112 DLPE-----AMSAAEITEKLGLHSIRNRPWFIQATCATS 145
>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
pdb|1MOZ|B Chain B, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces
Cerevisiae
Length = 183
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 55/124 (44%), Gaps = 13/124 (10%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N +++++LG G GK+ I+ R G+ T+K T+G F +T++ ++ +K +WD
Sbjct: 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG--FNVETLSYKN---LKLNVWDL 69
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE----LQKHGSPDIVMALVG 146
GQ YY D T D + A KE LQ+ D + +
Sbjct: 70 GGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTAS---KELHLMLQEEELQDAALLVFA 126
Query: 147 NKAD 150
NK D
Sbjct: 127 NKQD 130
>pdb|3O47|A Chain A, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
pdb|3O47|B Chain B, Crystal Structure Of Arfgap1-Arf1 Fusion Protein
Length = 329
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 166 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 219
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL- 151
++ L Y++ D + N+A + ++ L + D V+ + NK DL
Sbjct: 220 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 279
Query: 152 --HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E+ + G+ + T A + D + + + ++ +L
Sbjct: 280 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 325
>pdb|1RE0|A Chain A, Structure Of Arf1-Gdp Bound To Sec7 Domain Complexed With
Brefeldin A
pdb|1R8S|A Chain A, Arf1[delta1-17]-Gdp In Complex With A Sec7 Domain Carrying
The Mutation Of The Catalytic Glutamate To Lysine
pdb|1S9D|A Chain A, Arf1[delta 1-17]-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1U81|A Chain A, Delta-17 Human Adp Ribosylation Factor 1 Complexed With
Gdp
Length = 164
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 1 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 54
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL- 151
++ L Y++ D + N+A + ++ L + D V+ + NK DL
Sbjct: 55 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 114
Query: 152 --HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E+ + G+ + T A + D + + + ++ +L
Sbjct: 115 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160
>pdb|1HUR|A Chain A, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
pdb|1HUR|B Chain B, Human Adp-Ribosylation Factor 1 Complexed With Gdp, Full
Length Non-Myristoylated
Length = 180
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 17 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 70
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL- 151
++ L Y++ D + N+A + ++ L + D V+ + NK DL
Sbjct: 71 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 130
Query: 152 --HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E+ + G+ + T A + D + + + ++ +L
Sbjct: 131 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 176
>pdb|1RRG|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1RRG|B Chain B, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Dimeric Crystal Form
pdb|1R8Q|A Chain A, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1R8Q|B Chain B, Full-Length Arf1-Gdp-Mg In Complex With Brefeldin A And A
Sec7 Domain
pdb|1RRF|A Chain A, Non-Myristoylated Rat Adp-Ribosylation Factor-1 Complexed
With Gdp, Monomeric Crystal Form
Length = 181
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 74/166 (44%), Gaps = 10/166 (6%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 18 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 71
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL- 151
++ L Y++ D + N+A + ++ L + D V+ + NK DL
Sbjct: 72 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 131
Query: 152 --HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E+ + G+ + T A + D + + + ++ +L
Sbjct: 132 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 177
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDP--TSKVTVGASFLSQTIALQDSTT--VKFEIW 88
R KL ++G++G GK+ ++ + + + TVG I ++D + +W
Sbjct: 2 RXKLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVW 61
Query: 89 DTAGQERYAALAPLYYRGXXXXXXXYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGN 147
D AG+E + + P + YD++ + + + W+ ++ S V+ LVG
Sbjct: 62 DFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGT 120
Query: 148 KADLHEKREVPA 159
D+ ++++ A
Sbjct: 121 HLDVSDEKQRKA 132
>pdb|1R4A|A Chain A, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|B Chain B, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|C Chain C, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
pdb|1R4A|D Chain D, Crystal Structure Of Gtp-Bound Adp-Ribosylation Factor
Like Protein 1 (Arl1) And Grip Domain Of Golgin245
Complex
Length = 165
Score = 35.4 bits (80), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 56/122 (45%), Gaps = 9/122 (7%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+++++LG G GK+ I+ R G+ T+ T+G F +T+ ++ +KF++WD GQ
Sbjct: 3 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN---LKFQVWDLGGQ 56
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADL 151
YY D D +K++ V L++ ++ + NK D+
Sbjct: 57 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL-VAMLEEEELRKAILVVFANKQDM 115
Query: 152 HE 153
+
Sbjct: 116 EQ 117
>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum
Adp-Ribosylation Factor 1
Length = 181
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 16/169 (9%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
V+++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 18 VRILMVGLDAAGKTTILYKVKLGEV-VTTIPTIG--FNVETVEFRN---ISFTVWDVGGQ 71
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKA 149
++ L YY D + + A+ +EL + + D ++ + NK
Sbjct: 72 DKIRPLWRHYYSNTDGLIFVVDSNDRERIDDAR---EELHRMINEEELKDAIILVFANKQ 128
Query: 150 DL---HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
DL EV + + + F T A D + + F+ + L
Sbjct: 129 DLPNAMSAAEVTEKLHLNTIRERNWFIQSTCATRGDGLYEGFDWLTTHL 177
>pdb|2B6H|A Chain A, Structure Of Human Adp-Ribosylation Factor 5
Length = 192
Score = 35.4 bits (80), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 14/170 (8%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD G
Sbjct: 29 QMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ICFTVWDVGG 82
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADL 151
Q++ L Y++ D + + A K LQ+ D V+ + NK D+
Sbjct: 83 QDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDM 142
Query: 152 HEKR---EVPAQDGIEYAEKNGMFFIETSAKTA----DNINQLFEEIAKR 194
E+ + G+++ + T A D ++ L E++KR
Sbjct: 143 PNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELSKR 192
>pdb|1Z6X|A Chain A, Structure Of Human Adp-Ribosylation Factor 4
pdb|1Z6X|B Chain B, Structure Of Human Adp-Ribosylation Factor 4
Length = 180
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 80/174 (45%), Gaps = 22/174 (12%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD G
Sbjct: 17 QMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ICFTVWDVGG 70
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNK 148
Q+R L Y++ D + + Q ELQK D V+ L NK
Sbjct: 71 QDRIRPLWKHYFQNTQGLIFVVD---SNDRERIQEVADELQKMLLVDELRDAVLLLFANK 127
Query: 149 ADLHEKR---EVPAQDGIEYAEKNGMFFIETSAKTA-----DNINQLFEEIAKR 194
DL E+ + G++ + +N ++++ + T + ++ L E++KR
Sbjct: 128 QDLPNAMAISEMTDKLGLQ-SLRNRTWYVQATCATQGTGLYEGLDWLSNELSKR 180
>pdb|1J2J|A Chain A, Crystal Structure Of Gga1 Gat N-terminal Region In Complex
With Arf1 Gtp Form
pdb|1O3Y|A Chain A, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|1O3Y|B Chain B, Crystal Structure Of Mouse Arf1 (Delta17-Q71l), Gtp Form
pdb|2J59|A Chain A, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|B Chain B, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|C Chain C, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|D Chain D, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|E Chain E, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
pdb|2J59|F Chain F, Crystal Structure Of The Arf1:arhgap21-Arfbd Complex
Length = 166
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 73/166 (43%), Gaps = 10/166 (6%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD G
Sbjct: 3 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGL 56
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL- 151
++ L Y++ D + N+A + ++ L + D V+ + NK DL
Sbjct: 57 DKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLP 116
Query: 152 --HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
E+ + G+ + T A + D + + + ++ +L
Sbjct: 117 NAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 162
>pdb|2X77|A Chain A, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1.
pdb|2X77|B Chain B, Crystal Structure Of Leishmania Major Adp Ribosylation
Factor-Like 1
Length = 189
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
++++++LG GK+ I+ R G D + V L +T+ ++ + FE+WD G
Sbjct: 22 KIRVLMLGLDNAGKTSILYRLHLG--DVVTTVPTVGVNL-ETLQYKN---ISFEVWDLGG 75
Query: 93 QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALV-GNKADL 151
Q Y+ D T D A++ + L + L+ NK DL
Sbjct: 76 QTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDL 135
Query: 152 HE---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
+ + E+ Q G+ +++S+KT D + + + + +RL
Sbjct: 136 PDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERL 182
>pdb|2KSQ|A Chain A, The Myristoylated Yeast Arf1 In A Gtp And Bicelle Bound
Conformation
Length = 181
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 32/155 (20%), Positives = 68/155 (43%), Gaps = 11/155 (7%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
N ++++++G G GK+ ++ + G+ T+ T+G + + + F +WD
Sbjct: 15 NKEMRILMVGLDGAGKTTVLYKLKLGEV-ITTIPTIGFN-----VECVQYCNISFTVWDV 68
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKE-LQKHGSPDIVMALVGNKA 149
GQ+R +L YY D +A+ ++ L + + + NK
Sbjct: 69 GGQDRIRSLWRHYYCNTEGVIFVVDSNDRSRIGEAREVMQRMLNEDELCNAAWLVFANKQ 128
Query: 150 DLHEKR---EVPAQDGIEYAEKNGMFFIETSAKTA 181
DL E E+ + G+ ++ +N +FI+ + T+
Sbjct: 129 DLPEAMSAAEITEKLGL-HSIRNRPWFIQATCATS 162
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 59/130 (45%), Gaps = 6/130 (4%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDP--TSKVTVGASFLSQTIALQDSTT--VKFEIWDT 90
KL ++G++G GK+ ++ + + + TVG I ++D + +WD
Sbjct: 2 KLXIVGNTGSGKTTLLQQLXKTKKSDLGXQSATVGIDVKDWPIQIRDKRKRDLVLNVWDF 61
Query: 91 AGQERYAALAPLYYRGXXXXXXXYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKA 149
AG+E + + P + YD++ + + + W+ ++ S V+ LVG
Sbjct: 62 AGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVI-LVGTHL 120
Query: 150 DLHEKREVPA 159
D+ ++++ A
Sbjct: 121 DVSDEKQRKA 130
>pdb|3AQ4|A Chain A, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
pdb|3AQ4|B Chain B, Molecular Insights Into Plant Cell Proliferation
Disturbance By Agrobacterium Protein 6b
Length = 184
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 56/119 (47%), Gaps = 7/119 (5%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
++++++G GK+ I+ + G+ T+ T+G F +T+ ++ + F +WD GQ
Sbjct: 21 MRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEYKN---ISFTVWDVGGQ 74
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADL 151
++ L Y++ D D +A+ + + L + D V+ + NK DL
Sbjct: 75 DKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDL 133
>pdb|4DCN|A Chain A, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
pdb|4DCN|B Chain B, Crystal Structure Analysis Of The Arfaptin2 Bar Domain In
Complex With Arl1
Length = 166
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 55/122 (45%), Gaps = 9/122 (7%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+++++LG G GK+ I+ R G+ T+ T+G F +T+ ++ +KF++WD G
Sbjct: 5 MRILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN---LKFQVWDLGGL 58
Query: 94 ERYAALAPLYYRGXXXXXXXYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADL 151
YY D D +K++ V L++ ++ + NK D+
Sbjct: 59 TSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSEL-VAMLEEEELRKAILVVFANKQDM 117
Query: 152 HE 153
+
Sbjct: 118 EQ 119
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
+ N R KL+L+G SG GKS + + + +GA+ + L+ + +W
Sbjct: 2 SSNNRKKLLLMGRSGSGKSSMR-SIIFSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLW 60
Query: 89 DTAGQE-----RYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQ--KHGSPDIV 141
D GQ+ + ++ +D+ S + + + K L+ + SPD
Sbjct: 61 DCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAK 120
Query: 142 MALVGNKADL--HEKRE 156
+ ++ +K DL +KRE
Sbjct: 121 IFVLLHKMDLVQLDKRE 137
>pdb|1UPT|A Chain A, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|C Chain C, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|E Chain E, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
pdb|1UPT|G Chain G, Structure Of A Complex Of The Golgin-245 Grip Domain With
Arl1
Length = 171
Score = 30.8 bits (68), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
++++LG G GK+ I+ R G+ T+ T+G F +T+ ++ +KF++WD G
Sbjct: 9 RILILGLDGAGKTTILYRLQVGEV-VTTIPTIG--FNVETVTYKN---LKFQVWDLGGLT 62
Query: 95 RYAALAPLYY 104
YY
Sbjct: 63 SIRPYWRCYY 72
>pdb|2H16|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|C Chain C, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
pdb|2H16|D Chain D, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
Length = 183
Score = 30.0 bits (66), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GK+ I+ +F + TS T+G++ + I + ++ +F +WD GQE
Sbjct: 24 KVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV--EEIVINNT---RFLMWDIGGQE 77
Query: 95 RYAALAPLYY 104
+ YY
Sbjct: 78 SLRSSWNTYY 87
>pdb|2H17|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5 (Arl5)
(Casp Target)
Length = 181
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GK+ I+ +F + TS T+G++ + I + ++ +F +WD GQE
Sbjct: 23 KVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV--EEIVINNT---RFLMWDIGGQE 76
Query: 95 RYAALAPLYY 104
+ YY
Sbjct: 77 SLRSSWNTYY 86
>pdb|3R7K|A Chain A, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|B Chain B, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|C Chain C, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
pdb|3R7K|D Chain D, Crystal Structure Of A Probable Acyl Coa Dehydrogenase
From Mycobacterium Abscessus Atcc 19977 DSM 44196
Length = 403
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 8 PARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGV--GKSCIVLRFVRGQFDPTSKVT 65
P + G L E SD NLR + V GD+ V G + VR F T+ T
Sbjct: 138 PTLAGKMIGSLGVTEPGAGSDVANLRTRAVREGDTYVVNGAKTFITSGVRADFVTTAVRT 197
Query: 66 VGASFLSQTIALQDSTTVKFEI 87
G + ++ + D + FE+
Sbjct: 198 GGPGYGGVSLLVIDKNSPGFEV 219
>pdb|1ZJ6|A Chain A, Crystal Structure Of Human Arl5
Length = 187
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GK+ I+ +F + TS T+G++ + I + ++ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV--EEIVINNT---RFLMWDIGGQE 71
Query: 95 RYAALAPLYY 104
+ YY
Sbjct: 72 SLRSSWNTYY 81
>pdb|1Z6Y|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 5
pdb|1Z6Y|B Chain B, Structure Of Human Adp-Ribosylation Factor-Like 5
Length = 179
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K++++G GK+ I+ +F + TS T+G++ + I + ++ +F +WD GQE
Sbjct: 18 KVIIVGLDNAGKTTILYQFSMNEVVHTSP-TIGSNV--EEIVINNT---RFLMWDIGGQE 71
Query: 95 RYAALAPLYY 104
+ YY
Sbjct: 72 SLRSSWNTYY 81
>pdb|2QAG|A Chain A, Crystal Structure Of Human Septin Trimer 267
Length = 361
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 10/86 (11%)
Query: 17 GLNNLENA--GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
G NL N S K L+++G+SG+GKS ++ P + A + +T
Sbjct: 19 GFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERT 78
Query: 75 IALQDSTT--------VKFEIWDTAG 92
+ ++ ST ++ + DT G
Sbjct: 79 VQIEASTVEIEERGVKLRLTVVDTPG 104
>pdb|1ZCB|A Chain A, Crystal Structure Of G Alpha 13 In Complex With Gdp
pdb|3AB3|A Chain A, Crystal Structure Of P115rhogef Rgs Domain In Complex
With G Alpha 13
pdb|3AB3|C Chain C, Crystal Structure Of P115rhogef Rgs Domain In Complex
With G Alpha 13
Length = 362
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 1 MGCSGSVPARSSGQSGGL--NNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQ- 57
MGC+ S +++ + + NL G A+ +++ L+ G+SG +R + GQ
Sbjct: 1 MGCTLSAEDKAAVERSKMIDRNLREDGERSARLVKILLLGAGESGKSTFLKQMRIIHGQD 60
Query: 58 FDPTSKVTVGASFLSQTI 75
FD ++ + S I
Sbjct: 61 FDQRAREEFRPTIYSNVI 78
>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1
pdb|3DOF|A Chain A, Complex Of Arl2 And Bart, Crystal Form 2
Length = 192
Score = 28.1 bits (61), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 71/181 (39%), Gaps = 28/181 (15%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K ++L++LG GK+ I+ +F D S T+G + I + K IWD
Sbjct: 13 KERELRLLMLGLDNAGKTTILKKFNGEDIDTISP-TLGFN-----IKTLEHRGFKLNIWD 66
Query: 90 TAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQ----KHGSPDIVMALV 145
GQ+ + Y+ D Q +ELQ + + +
Sbjct: 67 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQ---RELQSLLVEERLAGATLLIF 123
Query: 146 GNKADL------HEKREVPAQDGIEYAEKNGMFFIE-TSAKTADN----INQLFEEIAKR 194
NK DL + REV D I ++ + I+ SA T +N I+ L ++I+ R
Sbjct: 124 ANKQDLPGALSSNAIREVLELDSI----RSHHWCIQGCSAVTGENLLPGIDWLLDDISSR 179
Query: 195 L 195
+
Sbjct: 180 I 180
>pdb|3C5H|A Chain A, Crystal Structure Of The Ras Homolog Domain Of Human
Grlf1 (P190rhogap)
Length = 255
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 40 GDSGVGKSCIVLRFVR 55
G G+GKSC+ RFVR
Sbjct: 35 GQCGIGKSCLCNRFVR 50
>pdb|2IWR|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG- 92
++L +LGD+ GKS ++ RF+ G + K T + + + D T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQYKKEMLV--DGQTHLVLIREEAGA 64
Query: 93 -QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
+++ A D S + ++ + L+ G + +ALVG + +
Sbjct: 65 PDAKFSGWAD----AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 152 HEKREVPAQDGIEYAEKNGM---FFIETSAKTADNINQLFEEIAKRL 195
D A M + ET A N++++F+E+A+++
Sbjct: 121 SASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV 167
>pdb|2QA5|A Chain A, Crystal Structure Of Sept2 G-Domain
pdb|2QA5|B Chain B, Crystal Structure Of Sept2 G-Domain
Length = 315
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 17 GLNNLENA--GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
G NL N S K L ++G+SG+GKS ++ P + A + +T
Sbjct: 19 GFANLPNQVHRKSVKKGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERT 78
Query: 75 IALQDSTT--------VKFEIWDTAG 92
+ ++ ST ++ + DT G
Sbjct: 79 VQIEASTVEIEERGVKLRLTVVDTPG 104
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 23 NAGSSDAKNLRVK----LVLLGDSGVGKSCIVLRFVRGQFDPTS 62
N + + NL +K LVLLG SG GK+ LR + G +PT
Sbjct: 23 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTT-TLRMIAGLEEPTE 65
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 23 NAGSSDAKNLRVK----LVLLGDSGVGKSCIVLRFVRGQFDPTS 62
N + + NL +K LVLLG SG GK+ LR + G +PT
Sbjct: 24 NFTAVNKLNLTIKDGEFLVLLGPSGCGKTT-TLRMIAGLEEPTE 66
>pdb|2BMJ|A Chain A, Gtpase Like Domain Of Centaurin Gamma 1 (Human)
Length = 178
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 70/167 (41%), Gaps = 12/167 (7%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG- 92
++L +LGD+ GKS ++ RF+ G + K T + + + D T I + AG
Sbjct: 8 LRLGVLGDARSGKSSLIHRFLTGSYQVLEK-TESEQYKKEMLV--DGQTHLVLIREEAGA 64
Query: 93 -QERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
+++ A D S + ++ + L+ G + +ALVG + +
Sbjct: 65 PDAKFSGWAD----AVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRI 120
Query: 152 HEKREVPAQDGIEYAEKNGM---FFIETSAKTADNINQLFEEIAKRL 195
D A M + ET A N++++F+E+A+++
Sbjct: 121 SASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKV 167
>pdb|3LLU|A Chain A, Crystal Structure Of The Nucleotide-Binding Domain Of
Ras- Related Gtp-Binding Protein C
Length = 196
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 15 SGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT 74
S G NL GS + +++L+G GKS I + V + P + + ++
Sbjct: 8 SSGRENLYFQGS------KPRILLMGLRRSGKSSIQ-KVVFHKMSPNETLFLESTNKIYK 60
Query: 75 IALQDSTTVKFEIWDTAGQ 93
+ +S+ V F+IWD GQ
Sbjct: 61 DDISNSSFVNFQIWDFPGQ 79
>pdb|2QNR|A Chain A, Human Septin 2 In Complex With Gdp
pdb|2QNR|B Chain B, Human Septin 2 In Complex With Gdp
Length = 301
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 8/71 (11%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT------- 82
K L ++G+SG+GKS ++ P ++ A + +T+ ++ ST
Sbjct: 15 KGFEFTLXVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGV 74
Query: 83 -VKFEIWDTAG 92
++ + DT G
Sbjct: 75 KLRLTVVDTPG 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,680,697
Number of Sequences: 62578
Number of extensions: 214491
Number of successful extensions: 1285
Number of sequences better than 100.0: 347
Number of HSP's better than 100.0 without gapping: 310
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 497
Number of HSP's gapped (non-prelim): 348
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)