BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028884
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 370 bits (951), Expect = e-102, Method: Compositional matrix adjust.
Identities = 177/202 (87%), Positives = 188/202 (93%)
Query: 1 MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP 60
MGC+ S+P R+SG GL+N ENA +DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD
Sbjct: 1 MGCASSLPDRNSGTLSGLSNSENAVPADAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDA 60
Query: 61 TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD 120
TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY+ALAPLYYRGA VAV+VYDITSP+
Sbjct: 61 TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYSALAPLYYRGAGVAVIVYDITSPE 120
Query: 121 SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180
SF KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP +DG+E AEKNGMFFIETSAKT
Sbjct: 121 SFKKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELAEKNGMFFIETSAKT 180
Query: 181 ADNINQLFEEIAKRLPRPSPSS 202
ADNINQLFEEI KRLPRP+PSS
Sbjct: 181 ADNINQLFEEIGKRLPRPAPSS 202
>sp|P31583|RHN1_NICPL Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2
SV=1
Length = 200
Score = 238 bits (608), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 111/177 (62%), Positives = 142/177 (80%), Gaps = 1/177 (0%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
SS NL KLVLLGD G GKS +V+RFV+GQF + T+GA+F S T+A+ ++T VK
Sbjct: 2 ASSSHNNLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNAT-VK 60
Query: 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
FEIWDTAGQERY +LAP+YYRGAA A++VYDITS DSF +A+ WV+ELQK G+P++VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMAL 120
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPS 201
GNKADL ++R+V A++ YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR P+
Sbjct: 121 AGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPA 177
>sp|P29687|RAB5_TOBAC Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1
Length = 200
Score = 233 bits (593), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 107/171 (62%), Positives = 139/171 (81%), Gaps = 1/171 (0%)
Query: 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90
NL KLVLLGD G GKS +V+RFV+GQF + T+GA+F S T+++ ++T VKFEIWDT
Sbjct: 8 NLNAKLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNAT-VKFEIWDT 66
Query: 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150
AGQERY +LAP+YYRGAA A++VYDITS +S +A+ WV+ELQK G+P++VMAL GNKAD
Sbjct: 67 AGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKAD 126
Query: 151 LHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPS 201
L +KR+V A++ YAE+NG+FF+ETSAKTA N+N +F EIAKRLPR P+
Sbjct: 127 LEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRLPRAQPA 177
>sp|Q9SN68|RAF2B_ARATH Ras-related protein RABF2b OS=Arabidopsis thaliana GN=RABF2B PE=1
SV=1
Length = 200
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 102/172 (59%), Positives = 138/172 (80%), Gaps = 1/172 (0%)
Query: 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89
K++ KLVLLGD G GKS +VLRFV+ QF + T+GA+F SQT+A+ D+T VKFEIWD
Sbjct: 7 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWD 65
Query: 90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149
TAGQERY +LAP+YYRGAA A++V+D+T+ SF +A+ WV+ELQ G+P++VMAL GNK+
Sbjct: 66 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKS 125
Query: 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPS 201
DL + R+V A+D YA++NG+FF+ETSAKTA N+ ++F EIA+RLPR P+
Sbjct: 126 DLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQPT 177
>sp|P31582|RAF2A_ARATH Ras-related protein RABF2a OS=Arabidopsis thaliana GN=RABF2A PE=1
SV=1
Length = 200
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/177 (59%), Positives = 138/177 (77%), Gaps = 1/177 (0%)
Query: 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVK 84
SS KN+ KLVLLGD G GKS +VLRFV+ QF + T+GA+F SQT+A+ D+T VK
Sbjct: 2 ASSGNKNINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VK 60
Query: 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMAL 144
FEIWDTAGQERY +LAP+YYRGAA A++V+DIT+ SF +A+ WV+ELQ G+P++VMAL
Sbjct: 61 FEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMAL 120
Query: 145 VGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPS 201
GNKADL + R+V A++ YA++N +FF+ETSAKTA N+ +F EIAKRLPR P+
Sbjct: 121 AGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRVQPA 177
>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1
Length = 216
Score = 223 bits (569), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YAE N + F+ETSAKTA N+N++F IAK+LP+ P +
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYAEDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
>sp|Q86JP3|RAB5A_DICDI Ras-related protein Rab-5A OS=Dictyostelium discoideum GN=rab5A
PE=3 SV=1
Length = 201
Score = 223 bits (568), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 107/177 (60%), Positives = 139/177 (78%), Gaps = 2/177 (1%)
Query: 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
+++ K + KLVLLG++ VGKS +VLRFVRG F + T+GA+FL+QT+ L D TTVKF
Sbjct: 2 NNNNKIFQFKLVLLGEAAVGKSSLVLRFVRGHFLDYQESTIGAAFLAQTVCLND-TTVKF 60
Query: 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
EIWDTAGQERY LAP+YYRGA A+VVYDI S DSF +A WVKELQ+ GSP+IV+AL
Sbjct: 61 EIWDTAGQERYHTLAPMYYRGAQAAIVVYDIRSEDSFERAIKWVKELQRQGSPNIVIALA 120
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
GNK DL KR+V + +YAE+NG+ F+ETSAKT+ N+N+LF EIAK+LP+ +P++
Sbjct: 121 GNKLDLAAKRKVETAEAQQYAEENGLLFMETSAKTSQNVNELFVEIAKKLPK-TPTT 176
>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1
Length = 216
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F IAK+LP+ P +
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2
Length = 216
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F IAK+LP+ P +
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1
Length = 216
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/180 (59%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFVRAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V QD YA+ N + F+ETSAKTA N+N++F IAK+LP+ P +
Sbjct: 130 ALAGNKADLATKRAVDFQDAQTYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1
Length = 216
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F IAK+LP+ P +
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2
Length = 216
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 11 NGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQTVCL-DDTT 69
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ D+F +A+ WVKELQ+ SP+IV+
Sbjct: 70 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVKELQRQASPNIVI 129
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKTA N+N++F IAK+LP+ P +
Sbjct: 130 ALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMAIAKKLPKNEPQN 189
>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1
Length = 215
Score = 222 bits (565), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 106/180 (58%), Positives = 135/180 (75%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N S +K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TT
Sbjct: 10 NGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V ++ YA+ N + F+ETSAKTA N+N LF IAK+LP+ P S
Sbjct: 129 ALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEPQS 188
>sp|Q9CQD1|RAB5A_MOUSE Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1
Length = 215
Score = 219 bits (558), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+ P +
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
>sp|Q0IIG7|RAB5A_BOVIN Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1
Length = 215
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+ P +
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
>sp|P61271|RAB5A_MACFA Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2
SV=1
Length = 215
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+ P +
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
>sp|P20339|RAB5A_HUMAN Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2
Length = 215
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+ P +
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
>sp|P18066|RAB5A_CANFA Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1
Length = 215
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+ P +
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
>sp|Q06AU6|RAB5A_PIG Ras-related protein Rab-5A OS=Sus scrofa GN=RAB5A PE=2 SV=1
Length = 215
Score = 219 bits (557), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 137/180 (76%), Gaps = 1/180 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N ++ K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+QT+ L D TT
Sbjct: 10 NGPNTGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCL-DDTT 68
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VKFEIWDTAGQERY +LAP+YYRGA A+VVYDIT+ +SF +A+ WVKELQ+ SP+IV+
Sbjct: 69 VKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVI 128
Query: 143 ALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
AL GNKADL KR V Q+ YA+ N + F+ETSAKT+ N+N++F IAK+LP+ P +
Sbjct: 129 ALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPKNEPQN 188
>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1
Length = 215
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 132/172 (76%), Gaps = 1/172 (0%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
+K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TTVKFEIW
Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTTVKFEIW 74
Query: 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148
DTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+AL GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
ADL KR V ++ YA+ N + F+ETSAKTA N+N LF IAK+LP+ P
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1
Length = 215
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 132/172 (76%), Gaps = 1/172 (0%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
+K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TTVKFEIW
Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTTVKFEIW 74
Query: 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148
DTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+AL GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
ADL KR V ++ YA+ N + F+ETSAKTA N+N LF IAK+LP+ P
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1
Length = 215
Score = 218 bits (555), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/172 (59%), Positives = 132/172 (76%), Gaps = 1/172 (0%)
Query: 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIW 88
+K + KLVLLG+S VGKS +VLRFV+GQF + T+GA+FL+Q++ L D TTVKFEIW
Sbjct: 16 SKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCL-DDTTVKFEIW 74
Query: 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148
DTAGQERY +LAP+YYRGA A+VVYDIT+ ++F +A+ WVKELQ+ SP IV+AL GNK
Sbjct: 75 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNK 134
Query: 149 ADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
ADL KR V ++ YA+ N + F+ETSAKTA N+N LF IAK+LP+ P
Sbjct: 135 ADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLAIAKKLPKSEP 186
>sp|P36586|YPT5_SCHPO GTP-binding protein ypt5 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt5 PE=1 SV=1
Length = 211
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 96/175 (54%), Positives = 123/175 (70%), Gaps = 1/175 (0%)
Query: 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT 82
N + + KLVLLGDS VGKS +VLRFV+ QFD + T+GA+FL+QT+ + ++T+
Sbjct: 4 NTAPKNVVTINQKLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTS 63
Query: 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM 142
VK EIWDTAGQERY +LAP+YYR A A+VVYDIT S KA+ W+KELQ+ IV+
Sbjct: 64 VKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVI 123
Query: 143 ALVGNKADL-HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
AL GNK DL E+R V D YA + + F ETSAKTA+N+N+LF IAK+LP
Sbjct: 124 ALAGNKLDLAQERRAVEKADAEAYAAEANLLFFETSAKTAENVNELFTAIAKKLP 178
>sp|Q9UL26|RB22A_HUMAN Ras-related protein Rab-22A OS=Homo sapiens GN=RAB22A PE=1 SV=2
Length = 194
Score = 192 bits (487), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 90/163 (55%), Positives = 122/163 (74%), Gaps = 1/163 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ ALAP+YYRG+A A++VYDIT ++F+ + WVKEL++HG P+IV+A+ GNK DL +
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
REV +D +YA+ F+ETSAK A NIN+LF EI++R+P
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167
>sp|Q6GQP4|RAB31_RAT Ras-related protein Rab-31 OS=Rattus norvegicus GN=Rab31 PE=1 SV=2
Length = 194
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 121/167 (72%), Gaps = 1/167 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ +LAP+YYRG+A AV+VYDIT DSF+ + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
REVP +D EYAE G +ETSAK A NI +LF+ I++++P P
Sbjct: 125 IREVPLKDAKEYAESIGALVVETSAKNAINIEELFQGISRQIPPLDP 171
>sp|Q921E2|RAB31_MOUSE Ras-related protein Rab-31 OS=Mus musculus GN=Rab31 PE=1 SV=1
Length = 194
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 121/167 (72%), Gaps = 1/167 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ +LAP+YYRG+A AV+VYDIT DSF+ + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFHTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
REVP +D EYAE G +ETSAK A NI +LF+ I++++P P
Sbjct: 125 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLGP 171
>sp|P35285|RB22A_MOUSE Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2
Length = 194
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ ALAP+YYRG+A A++VYDIT ++F+ + WV+EL++HG P IV+A+ GNK DL +
Sbjct: 65 ERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
REV +D +YA+ F+ETSAK A NIN+LF EI++R+P
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/166 (53%), Positives = 124/166 (74%), Gaps = 4/166 (2%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+KLVLLG++ VGKS IVLRFV F + T+GA+FL+Q + + + T VKFEIWDTAGQ
Sbjct: 8 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHT-VKFEIWDTAGQ 66
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+A+LAP+YYR A A+VVYD+T P SF KA++WVKEL + S DI++ALVGNK D+ +
Sbjct: 67 ERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQ 126
Query: 154 ---KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+R+V ++G + AE+ G+ F ETSAKT +N+N +F I +++P
Sbjct: 127 EGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 172
>sp|Q13636|RAB31_HUMAN Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1
Length = 194
Score = 189 bits (479), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/167 (54%), Positives = 120/167 (71%), Gaps = 1/167 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV+ FD T+GASF+++T+ + KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
ER+ +LAP+YYRG+A AV+VYDIT DSF + WVKEL++HG +IVMA+ GNK DL +
Sbjct: 65 ERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200
REVP +D EYAE G +ETSAK A NI +LF+ I++++P P
Sbjct: 125 IREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLDP 171
>sp|P51154|RB22A_CANFA Ras-related protein Rab-22A OS=Canis familiaris GN=RAB22A PE=1 SV=1
Length = 194
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 89/163 (54%), Positives = 121/163 (74%), Gaps = 1/163 (0%)
Query: 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93
+K+ LLGD+GVGKS IV RFV FDP T+GASF+++T+ Q+ KF IWDTAGQ
Sbjct: 6 LKVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELH-KFLIWDTAGQ 64
Query: 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153
E + ALAP+YYRG+A A++VYDIT ++F+ + WVKEL++HG P+IV+A+ GNK DL +
Sbjct: 65 EAFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVKELRQHGPPNIVVAIAGNKCDLID 124
Query: 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
REV +D +YA+ F+ETSAK A NIN+LF EI++R+P
Sbjct: 125 VREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP 167
>sp|Q54RX9|RAB5B_DICDI Putative ras-related protein Rab-5B OS=Dictyostelium discoideum
GN=rab5B PE=5 SV=1
Length = 214
Score = 174 bits (440), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 86/162 (53%), Positives = 111/162 (68%), Gaps = 4/162 (2%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
KLVLLG+ GK+CI R VR +F PT T+GA+FL +++ + D+ +K EIWDTAGQE
Sbjct: 51 KLVLLGEMNTGKTCISSRLVRNEFGPTDS-TIGAAFLVKSMVV-DNINIKLEIWDTAGQE 108
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY +L P+YYRGAA AVVVYDIT ++F + WV ELQKH SP++++AL GNK DL
Sbjct: 109 RYRSLTPMYYRGAAAAVVVYDITKKNTFETLKRWVSELQKHASPNLILALAGNKVDL-PN 167
Query: 155 REVPAQDGIEY-AEKNGMFFIETSAKTADNINQLFEEIAKRL 195
REV + Y +E F ETSA + NIN+LF EI +RL
Sbjct: 168 REVQVDEVNRYISELGNAIFFETSAASGQNINELFTEICRRL 209
>sp|P36019|YPT53_YEAST GTP-binding protein YPT53 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT53 PE=1 SV=1
Length = 220
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/177 (48%), Positives = 119/177 (67%), Gaps = 7/177 (3%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91
L +K+VLLG+S VGKS IVLRFV F + + T+GA+FL++ I +D +KFEIWDTA
Sbjct: 11 LTIKVVLLGESAVGKSSIVLRFVSDDFKESKEPTIGAAFLTKRIT-RDGKVIKFEIWDTA 69
Query: 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151
GQER+A LAP+YYR A A+VV+D+T+ SF KAQ WV+EL + DIV+ALVGNK DL
Sbjct: 70 GQERFAPLAPMYYRNAQAALVVFDVTNEGSFYKAQNWVEELHEKVGHDIVIALVGNKMDL 129
Query: 152 ------HEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRPSPSS 202
+E R + A E+ + + E SAKT +NI Q+F+ + +++P P ++
Sbjct: 130 LNNDDENENRAMKAPAVQNLCERENLLYFEASAKTGENIYQIFQTLGEKVPCPEQNT 186
>sp|P36018|YPT52_YEAST GTP-binding protein YPT52 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=YPT52 PE=1 SV=1
Length = 234
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/192 (44%), Positives = 119/192 (61%), Gaps = 28/192 (14%)
Query: 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-------DSTTVK 84
L+ KLVLLGDS VGKS IV RFV+ FD + T+GA+FLSQ+I + +K
Sbjct: 2 LQFKLVLLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIK 61
Query: 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQ-KHGSPDIVMA 143
FEIWDTAGQERY +LAP+YYR A A+VVYDIT DS KA+ WV EL+ K G D+V+
Sbjct: 62 FEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIY 121
Query: 144 LVGNKADLHEK--------------------REVPAQDGIEYAEKNGMFFIETSAKTADN 183
L+GNK DL ++ R + ++ +YA++ G+ F E SAKT +
Sbjct: 122 LLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEG 181
Query: 184 INQLFEEIAKRL 195
+ ++F++I ++L
Sbjct: 182 VKEIFQDIGEKL 193
>sp|Q40194|RB11D_LOTJA Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1
Length = 218
Score = 165 bits (417), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/172 (45%), Positives = 114/172 (66%), Gaps = 1/172 (0%)
Query: 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
+ D + KLVL+GDSGVGKS ++ RF + +F+ SK T+G F ++T+ + D+ VK
Sbjct: 6 TDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNV-DAKVVKA 64
Query: 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
+IWDTAGQERY A+ YYRGA A++VYD+T +F A W+KEL+ H P+IV+ L+
Sbjct: 65 QIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLI 124
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
GNK+DL VP +DG +AE+ ++F+ETSA A N+ F E+ ++ R
Sbjct: 125 GNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYR 176
>sp|Q40191|RB11A_LOTJA Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1
Length = 226
Score = 164 bits (416), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/168 (48%), Positives = 113/168 (67%), Gaps = 2/168 (1%)
Query: 25 GSSDAK-NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTV 83
G ++AK + K+VL+GDS VGKS I+ RF R +F SK T+G F ++T+ + D TV
Sbjct: 8 GDANAKIDYVFKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVI-DHKTV 66
Query: 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA 143
K +IWDTAGQERY A+ YYRGA A++VYDIT +F+ W++EL+ H +IV+
Sbjct: 67 KAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVII 126
Query: 144 LVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
L+GNK DL +R+VP +D E+AEK G+FF+ETSA A N+ F +
Sbjct: 127 LIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTV 174
>sp|Q40522|RB11D_TOBAC Ras-related protein Rab11D OS=Nicotiana tabacum GN=RAB11D PE=2 SV=1
Length = 222
Score = 163 bits (413), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/154 (50%), Positives = 107/154 (69%), Gaps = 1/154 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS I+ RF R +F SK T+G F ++T+A+Q + VK +IWDTAGQE
Sbjct: 17 KVVLIGDSAVGKSQILARFARNEFSLDSKATIGVEFQTRTLAIQHKS-VKAQIWDTAGQE 75
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F+ W++EL+ H +IV+ L+GNK DL ++
Sbjct: 76 RYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRAHADRNIVIMLIGNKTDLEDQ 135
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188
R VP +D E+A+K G+FF+ETSA A N+ F
Sbjct: 136 RAVPTEDAKEFAQKEGLFFLETSAMEATNLEDAF 169
>sp|O04486|RAA2A_ARATH Ras-related protein RABA2a OS=Arabidopsis thaliana GN=RABA2A PE=2
SV=1
Length = 217
Score = 162 bits (411), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 79/163 (48%), Positives = 107/163 (65%), Gaps = 1/163 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF R +F SK T+G F ++T+ ++ TVK +IWDTAGQE
Sbjct: 14 KVVLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLQVE-GRTVKAQIWDTAGQE 72
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYD+T P +F W+KEL+ H +IV+ L+GNK DL
Sbjct: 73 RYRAITSAYYRGALGALLVYDVTKPTTFENVSRWLKELRDHADSNIVIMLIGNKTDLKHL 132
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
R V +D YAEK G+ FIETSA A N+ + F+ I + R
Sbjct: 133 RAVATEDAQSYAEKEGLSFIETSALEALNVEKAFQTILSEVYR 175
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1
PE=2 SV=1
Length = 205
Score = 162 bits (410), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 77/164 (46%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ I+ RF+ FD T + T+G FLS+T+ L+D T ++ ++WDTAG
Sbjct: 11 KFKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-IRLQLWDTAG 69
Query: 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R ++VAVVVYDIT+ +SF++ WV +++ D+++ LVGNK DL
Sbjct: 70 QERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVIIVLVGNKTDLA 129
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR+V +DG + A + FIETSAK N+ QLF +IA LP
Sbjct: 130 DKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALP 173
>sp|Q40195|RB11E_LOTJA Ras-related protein Rab11E OS=Lotus japonicus GN=RAB11E PE=2 SV=1
Length = 218
Score = 162 bits (409), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 111/170 (65%), Gaps = 1/170 (0%)
Query: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEI 87
D + KLVL+GDSGVGKS ++ RF R +F+ SK T+G F ++++ + D +K +I
Sbjct: 8 DEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNI-DGKVIKAQI 66
Query: 88 WDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147
WDTAGQERY A+ YYRGA A++VYD+T +F A W+KEL+ H P+IV+ L+GN
Sbjct: 67 WDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIVVMLIGN 126
Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
K+DL V +DG +AEK ++F+ETSA A N+ F E+ ++ R
Sbjct: 127 KSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYR 176
>sp|Q9SMQ6|RAA4B_ARATH Ras-related protein RABA4b OS=Arabidopsis thaliana GN=RABA4B PE=2
SV=1
Length = 224
Score = 161 bits (408), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 73/161 (45%), Positives = 111/161 (68%), Gaps = 1/161 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS ++ RF R +F SK T+G F ++T++++ + +K +IWDTAGQE
Sbjct: 19 KVVLIGDSAVGKSQLLARFARDEFSMDSKATIGVEFQTRTLSIEQKS-IKAQIWDTAGQE 77
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYD+T ++F W++EL+ H +IV+ L+GNK+DL ++
Sbjct: 78 RYRAVTSAYYRGAVGAMLVYDMTKRETFEHIPRWLEELRAHADKNIVIILIGNKSDLEDQ 137
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRL 195
R VP +D E+AEK G+FF+ETSA A N+ F + ++
Sbjct: 138 RAVPTEDAKEFAEKEGLFFLETSALNATNVENSFNTLMTQI 178
>sp|O49513|RAA1E_ARATH Ras-related protein RABA1e OS=Arabidopsis thaliana GN=RABA1E PE=2
SV=1
Length = 217
Score = 160 bits (406), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 76/172 (44%), Positives = 111/172 (64%), Gaps = 1/172 (0%)
Query: 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKF 85
+ D + KLVL+GDSGVGKS ++ RF R +F SK T+G F ++++ + D +K
Sbjct: 6 ADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHV-DEKIIKA 64
Query: 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145
++WDTAGQERY A+ YYRGA A++VYDIT +F + W+KEL+ H ++V+ LV
Sbjct: 65 QLWDTAGQERYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLV 124
Query: 146 GNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
GNKADL R VP ++ ++E+ MFF+ETSA A N+ Q F + ++ R
Sbjct: 125 GNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYR 176
>sp|Q559X6|RAB2B_DICDI Ras-related protein Rab-2B OS=Dictyostelium discoideum GN=rab2B
PE=3 SV=1
Length = 202
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/190 (41%), Positives = 120/190 (63%), Gaps = 2/190 (1%)
Query: 13 GQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS 72
G SG + S+ ++L K +++GDS VGKS ++L+FV +F P S T+G F S
Sbjct: 5 GSSGEKPTFNDRKSTSYEHL-FKYIMVGDSAVGKSNLLLQFVDKRFAPNSDFTIGVEFGS 63
Query: 73 QTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL 132
++I + D +K +IWDTAGQE++ ++ YYRGA A++VYDIT DSF W+ +
Sbjct: 64 RSININDKQ-IKLQIWDTAGQEKFRSITRAYYRGAVCAMIVYDITRRDSFESLNSWLTDC 122
Query: 133 QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192
+K S D+ L+GNKADL R+V + E+AEKNG+ F ETSAKTA N+++ FE+
Sbjct: 123 RKFSSCDVTTVLIGNKADLEANRQVSTSEAKEFAEKNGLMFFETSAKTALNVDEAFEKST 182
Query: 193 KRLPRPSPSS 202
+++ + S+
Sbjct: 183 EQILKKLESN 192
>sp|Q39222|RAA1B_ARATH Ras-related protein RABA1b OS=Arabidopsis thaliana GN=RABA1B PE=2
SV=1
Length = 216
Score = 160 bits (406), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 77/163 (47%), Positives = 108/163 (66%), Gaps = 1/163 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS ++ RF + +F+ SK T+G F ++T+ + D VK +IWDTAGQE
Sbjct: 15 KVVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATRTLKV-DGKVVKAQIWDTAGQE 73
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYD+T +F W+KEL+ H P+IV+ LVGNK+DL
Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRRATFENVDRWLKELKNHTDPNIVVMLVGNKSDLRHL 133
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
VP +DG YAE+ + F+ETSA A N+ F E+ ++ R
Sbjct: 134 LAVPTEDGKSYAEQESLCFMETSALEATNVEDAFAEVLTQIYR 176
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 71
Query: 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R + VAVVVYDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 72 QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 131
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR++ ++G + A++ + FIETSAKT N+ QLF +A LP
Sbjct: 132 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 71
Query: 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R + VAVVVYDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 72 QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 131
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR++ ++G + A++ + FIETSAKT N+ QLF +A LP
Sbjct: 132 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 160 bits (405), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 74/164 (45%), Positives = 112/164 (68%), Gaps = 1/164 (0%)
Query: 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92
+ KLV LG+ VGK+ ++ RF+ FD T + T+G FLS+T+ L+D T V+ ++WDTAG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAG 71
Query: 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152
QER+ +L P Y R + VAVVVYDIT+ +SF + W+ +++ D+++ LVGNK DL
Sbjct: 72 QERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKWIDDVRTERGSDVIIMLVGNKTDLA 131
Query: 153 EKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196
+KR++ ++G + A++ + FIETSAKT N+ QLF +A LP
Sbjct: 132 DKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLFRRVASALP 175
>sp|Q9FJN8|RAA4A_ARATH Ras-related protein RABA4a OS=Arabidopsis thaliana GN=RABA4A PE=2
SV=1
Length = 226
Score = 160 bits (404), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/157 (47%), Positives = 108/157 (68%), Gaps = 1/157 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS I+ R+ R +F SK T+G F ++T+ + D +VK +IWDTAGQE
Sbjct: 19 KVVLIGDSAVGKSQILARYARDEFSLDSKATIGVEFQTRTLVI-DHKSVKAQIWDTAGQE 77
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F+ W++EL+ H +IV+ L+GNK+DL ++
Sbjct: 78 RYRAVTSAYYRGAVGAMLVYDITRRQTFDHIPRWLEELRAHADKNIVIILIGNKSDLVDQ 137
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
R +P +D E+AEK G+FF+ETSA A N+ F +
Sbjct: 138 RAIPTEDAKEFAEKEGLFFLETSAFNATNVESAFSTV 174
>sp|P25766|RLGP1_ORYSJ Ras-related protein RGP1 OS=Oryza sativa subsp. japonica GN=RGP1
PE=2 SV=2
Length = 226
Score = 159 bits (403), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 76/163 (46%), Positives = 109/163 (66%), Gaps = 1/163 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDS VGKS ++ RF R +F+ SK T+G F ++T+ + D+ TVK +IWDTAGQE
Sbjct: 20 KVVLIGDSAVGKSQLLARFARNEFNLDSKATIGVEFQTRTLHI-DARTVKAQIWDTAGQE 78
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT SF+ W++EL+ H +IV+ L+GNK+DL
Sbjct: 79 RYRAVTSAYYRGAVGAMLVYDITKRQSFDHVARWLEELRGHADKNIVIMLIGNKSDLGTL 138
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
R VP +D E+AE+ +FF+ETSA + N+ F + + R
Sbjct: 139 RVVPTEDAKEFAERENLFFMETSALESTNVENAFMTVLTEIYR 181
>sp|Q39434|RB2BV_BETVU Ras-related protein Rab2BV OS=Beta vulgaris GN=RAB2BV PE=2 SV=1
Length = 214
Score = 159 bits (403), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 78/157 (49%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
Query: 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94
K+VL+GDSGVGKS I+ RF R +F SK T+G F ++T+ ++ TVK +IWDTAGQE
Sbjct: 14 KIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-GKTVKAQIWDTAGQE 72
Query: 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154
RY A+ YYRGA A++VYDIT +F+ Q W++EL+ H +IV+ + GNK+DL
Sbjct: 73 RYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLKHL 132
Query: 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191
R V +DG AEK G+ F+ETSA A NI + F+ I
Sbjct: 133 RAVSEEDGQALAEKEGLSFLETSALEAVNIEKAFQTI 169
>sp|P17610|YPT3_SCHPO GTP-binding protein ypt3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt3 PE=1 SV=1
Length = 214
Score = 159 bits (402), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 77/170 (45%), Positives = 109/170 (64%), Gaps = 1/170 (0%)
Query: 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEI 87
D + K VL+GDSGVGKS +++RF R +F+ SK T+G F ++ I L D+ +K +I
Sbjct: 5 DEYDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVL-DNKKIKAQI 63
Query: 88 WDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147
WDTAGQERY A+ YYRGA A++VYDIT SF+ W+KEL++H +IV+ LVGN
Sbjct: 64 WDTAGQERYRAITSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGN 123
Query: 148 KADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197
K DL R V ++ +A +N + FIETSA A N+ + F+ + + R
Sbjct: 124 KTDLLHLRAVSTEEAQAFAAENNLSFIETSAMDASNVEEAFQTVLTEIFR 173
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,359,335
Number of Sequences: 539616
Number of extensions: 2892772
Number of successful extensions: 11481
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 276
Number of HSP's that attempted gapping in prelim test: 9145
Number of HSP's gapped (non-prelim): 1222
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)