Query 028884
Match_columns 202
No_of_seqs 114 out of 1873
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 04:03:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028884.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028884hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0092 GTPase Rab5/YPT51 and 100.0 7.3E-38 1.6E-42 216.5 19.1 170 31-201 3-172 (200)
2 KOG0084 GTPase Rab1/YPT1, smal 100.0 4.4E-38 9.5E-43 218.3 17.3 172 28-200 4-176 (205)
3 KOG0078 GTP-binding protein SE 100.0 8.3E-37 1.8E-41 214.9 18.8 171 28-199 7-177 (207)
4 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.6E-36 3.6E-41 209.9 18.8 167 31-198 20-187 (221)
5 cd04121 Rab40 Rab40 subfamily. 100.0 7.5E-36 1.6E-40 215.2 20.9 168 31-200 4-171 (189)
6 cd04120 Rab12 Rab12 subfamily. 100.0 7.8E-36 1.7E-40 217.0 19.8 164 34-198 1-165 (202)
7 KOG0098 GTPase Rab2, small G p 100.0 4.7E-36 1E-40 206.1 16.0 167 30-197 3-169 (216)
8 KOG0080 GTPase Rab18, small G 100.0 1.2E-35 2.6E-40 199.3 16.7 170 28-198 6-176 (209)
9 cd04122 Rab14 Rab14 subfamily. 100.0 2.3E-34 5.1E-39 204.1 20.8 164 33-197 2-165 (166)
10 cd04133 Rop_like Rop subfamily 100.0 4.1E-34 8.8E-39 204.0 19.8 162 34-198 2-175 (176)
11 cd01867 Rab8_Rab10_Rab13_like 100.0 7.9E-34 1.7E-38 201.6 20.7 165 32-197 2-166 (167)
12 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 9.3E-34 2E-38 203.3 20.3 163 31-196 3-180 (182)
13 cd04127 Rab27A Rab27a subfamil 100.0 1.2E-33 2.6E-38 203.0 20.9 166 32-197 3-178 (180)
14 KOG0394 Ras-related GTPase [Ge 100.0 3E-34 6.6E-39 196.8 16.4 169 30-199 6-181 (210)
15 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 8.8E-34 1.9E-38 202.2 19.1 164 33-198 2-166 (172)
16 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 1.4E-33 3.1E-38 206.0 20.4 165 34-198 1-170 (201)
17 cd04117 Rab15 Rab15 subfamily. 100.0 2.6E-33 5.7E-38 197.8 20.8 161 34-195 1-161 (161)
18 cd01865 Rab3 Rab3 subfamily. 100.0 2.8E-33 6E-38 198.5 20.9 162 34-196 2-163 (165)
19 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 2.3E-33 5E-38 199.0 20.4 164 33-197 2-165 (166)
20 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3E-33 6.4E-38 206.8 20.6 165 31-198 11-190 (232)
21 cd04131 Rnd Rnd subfamily. Th 100.0 3.5E-33 7.6E-38 199.9 20.0 160 34-196 2-176 (178)
22 cd04109 Rab28 Rab28 subfamily. 100.0 5.5E-33 1.2E-37 204.8 21.5 165 34-198 1-168 (215)
23 cd04119 RJL RJL (RabJ-Like) su 100.0 6.2E-33 1.3E-37 196.8 20.7 162 34-196 1-167 (168)
24 KOG0093 GTPase Rab3, small G p 100.0 8.3E-34 1.8E-38 187.8 14.8 167 31-198 19-185 (193)
25 cd01868 Rab11_like Rab11-like. 100.0 9E-33 1.9E-37 195.8 21.3 163 32-195 2-164 (165)
26 cd01875 RhoG RhoG subfamily. 100.0 5.7E-33 1.2E-37 201.2 20.6 164 33-199 3-180 (191)
27 cd01864 Rab19 Rab19 subfamily. 100.0 1.2E-32 2.5E-37 195.2 21.3 163 32-195 2-165 (165)
28 cd04111 Rab39 Rab39 subfamily. 100.0 8E-33 1.7E-37 203.2 20.4 166 33-198 2-168 (211)
29 cd04113 Rab4 Rab4 subfamily. 100.0 1.3E-32 2.8E-37 194.2 20.5 161 34-195 1-161 (161)
30 cd01866 Rab2 Rab2 subfamily. 100.0 1.7E-32 3.6E-37 195.0 20.9 166 31-197 2-167 (168)
31 KOG0091 GTPase Rab39, small G 100.0 1.2E-33 2.7E-38 190.2 13.8 165 32-196 7-173 (213)
32 PF00071 Ras: Ras family; Int 100.0 1E-32 2.2E-37 194.9 18.8 161 35-196 1-161 (162)
33 KOG0087 GTPase Rab11/YPT3, sma 100.0 5.4E-33 1.2E-37 194.9 17.0 172 26-198 7-178 (222)
34 cd04125 RabA_like RabA-like su 100.0 1.4E-32 3.1E-37 198.7 19.9 164 34-198 1-164 (188)
35 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1.5E-32 3.3E-37 197.4 19.8 163 34-198 1-168 (182)
36 PLN03110 Rab GTPase; Provision 100.0 1.6E-32 3.5E-37 202.3 20.4 167 30-197 9-175 (216)
37 cd04110 Rab35 Rab35 subfamily. 100.0 2.1E-32 4.5E-37 199.5 20.5 167 31-199 4-170 (199)
38 cd04136 Rap_like Rap-like subf 100.0 1.4E-32 3.1E-37 194.2 19.1 160 34-195 2-162 (163)
39 cd04106 Rab23_lke Rab23-like s 100.0 4.6E-32 1E-36 191.4 20.6 160 34-194 1-161 (162)
40 smart00175 RAB Rab subfamily o 100.0 4.2E-32 9E-37 192.0 20.4 164 34-198 1-164 (164)
41 KOG0086 GTPase Rab4, small G p 100.0 5.9E-33 1.3E-37 185.0 14.8 169 27-196 3-171 (214)
42 PLN03071 GTP-binding nuclear p 100.0 5.3E-32 1.2E-36 199.8 21.2 164 31-198 11-174 (219)
43 cd01874 Cdc42 Cdc42 subfamily. 100.0 4.7E-32 1E-36 193.8 19.8 159 34-195 2-174 (175)
44 cd04175 Rap1 Rap1 subgroup. T 100.0 3.3E-32 7.2E-37 192.7 18.7 162 33-196 1-163 (164)
45 cd00877 Ran Ran (Ras-related n 100.0 6.3E-32 1.4E-36 191.6 19.8 161 34-198 1-161 (166)
46 cd04112 Rab26 Rab26 subfamily. 100.0 5.7E-32 1.2E-36 196.1 19.8 164 34-198 1-165 (191)
47 PTZ00369 Ras-like protein; Pro 100.0 5E-32 1.1E-36 196.0 19.5 165 32-198 4-169 (189)
48 cd01860 Rab5_related Rab5-rela 100.0 1.7E-31 3.7E-36 188.7 21.1 162 33-195 1-162 (163)
49 cd04124 RabL2 RabL2 subfamily. 100.0 9.8E-32 2.1E-36 189.8 19.7 161 34-199 1-161 (161)
50 cd04144 Ras2 Ras2 subfamily. 100.0 4.7E-32 1E-36 196.4 18.3 162 35-198 1-165 (190)
51 cd04116 Rab9 Rab9 subfamily. 100.0 2.2E-31 4.7E-36 189.6 21.5 163 31-195 3-170 (170)
52 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.3E-31 5E-36 188.3 21.4 162 34-196 1-164 (164)
53 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.5E-31 3.2E-36 190.5 20.4 163 33-196 2-169 (170)
54 cd04176 Rap2 Rap2 subgroup. T 100.0 8.4E-32 1.8E-36 190.4 19.0 161 33-195 1-162 (163)
55 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1.6E-31 3.4E-36 190.3 20.1 162 35-197 2-166 (170)
56 PLN03108 Rab family protein; P 100.0 1.3E-31 2.9E-36 196.7 20.2 166 31-197 4-169 (210)
57 cd01861 Rab6 Rab6 subfamily. 100.0 2.7E-31 5.9E-36 187.4 20.7 161 34-195 1-161 (161)
58 cd04140 ARHI_like ARHI subfami 100.0 1.4E-31 3E-36 189.8 19.2 159 34-194 2-163 (165)
59 KOG0079 GTP-binding protein H- 100.0 1.3E-32 2.9E-37 182.3 13.0 163 32-196 7-169 (198)
60 cd01871 Rac1_like Rac1-like su 100.0 2E-31 4.4E-36 190.3 20.2 158 34-194 2-173 (174)
61 cd04126 Rab20 Rab20 subfamily. 100.0 1.6E-31 3.5E-36 196.5 19.7 157 34-196 1-190 (220)
62 smart00173 RAS Ras subfamily o 100.0 1.4E-31 3.1E-36 189.4 18.5 162 34-197 1-163 (164)
63 cd04134 Rho3 Rho3 subfamily. 100.0 2.6E-31 5.5E-36 192.3 20.0 163 34-199 1-177 (189)
64 cd04132 Rho4_like Rho4-like su 100.0 2.8E-31 6.1E-36 191.8 19.8 164 34-199 1-170 (187)
65 cd04145 M_R_Ras_like M-Ras/R-R 100.0 3E-31 6.5E-36 187.6 19.5 161 33-195 2-163 (164)
66 cd04138 H_N_K_Ras_like H-Ras/N 100.0 3.3E-31 7.1E-36 186.9 19.4 160 33-195 1-161 (162)
67 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 3.6E-31 7.9E-36 194.7 20.3 163 34-199 2-179 (222)
68 cd04142 RRP22 RRP22 subfamily. 100.0 3E-31 6.4E-36 192.9 19.4 166 34-200 1-178 (198)
69 cd04123 Rab21 Rab21 subfamily. 100.0 1.6E-30 3.4E-35 183.4 21.1 161 34-195 1-161 (162)
70 KOG0088 GTPase Rab21, small G 100.0 2.4E-32 5.2E-37 183.1 10.6 167 31-198 11-177 (218)
71 smart00174 RHO Rho (Ras homolo 100.0 1.1E-30 2.3E-35 186.6 19.5 159 36-197 1-173 (174)
72 cd04143 Rhes_like Rhes_like su 100.0 1.3E-30 2.7E-35 195.2 20.1 164 34-199 1-174 (247)
73 KOG0095 GTPase Rab30, small G 100.0 1.2E-31 2.7E-36 178.1 12.8 167 29-196 3-169 (213)
74 smart00176 RAN Ran (Ras-relate 100.0 1.1E-30 2.3E-35 189.8 18.8 156 39-198 1-156 (200)
75 cd01892 Miro2 Miro2 subfamily. 100.0 9E-31 2E-35 186.2 18.1 166 31-199 2-169 (169)
76 cd04118 Rab24 Rab24 subfamily. 100.0 2.1E-30 4.5E-35 188.2 20.2 163 34-198 1-168 (193)
77 cd01862 Rab7 Rab7 subfamily. 100.0 2.9E-30 6.3E-35 183.9 20.5 165 34-199 1-170 (172)
78 cd01863 Rab18 Rab18 subfamily. 100.0 3.7E-30 8.1E-35 181.6 20.8 160 34-195 1-161 (161)
79 cd04114 Rab30 Rab30 subfamily. 100.0 8.4E-30 1.8E-34 181.1 21.4 164 31-195 5-168 (169)
80 PLN03118 Rab family protein; P 100.0 4.6E-30 1E-34 188.8 20.7 168 29-198 10-179 (211)
81 cd04146 RERG_RasL11_like RERG/ 100.0 1.4E-30 3.1E-35 184.5 16.8 160 35-196 1-164 (165)
82 cd01873 RhoBTB RhoBTB subfamil 100.0 6.6E-30 1.4E-34 185.2 20.2 159 33-194 2-194 (195)
83 cd04177 RSR1 RSR1 subgroup. R 100.0 5.1E-30 1.1E-34 182.2 19.3 162 33-196 1-164 (168)
84 cd04135 Tc10 TC10 subfamily. 100.0 7.7E-30 1.7E-34 182.2 19.8 159 34-195 1-173 (174)
85 cd04103 Centaurin_gamma Centau 100.0 4.9E-30 1.1E-34 180.3 18.3 154 34-195 1-158 (158)
86 cd04130 Wrch_1 Wrch-1 subfamil 100.0 9.4E-30 2E-34 181.7 19.9 157 34-193 1-171 (173)
87 cd00154 Rab Rab family. Rab G 100.0 1.1E-29 2.4E-34 178.1 19.6 159 34-193 1-159 (159)
88 cd04148 RGK RGK subfamily. Th 100.0 1.3E-29 2.8E-34 187.3 18.8 161 34-197 1-164 (221)
89 KOG0081 GTPase Rab27, small G 100.0 5.5E-32 1.2E-36 181.5 5.4 171 28-198 4-183 (219)
90 cd04139 RalA_RalB RalA/RalB su 100.0 6E-29 1.3E-33 175.7 20.0 162 34-197 1-163 (164)
91 cd00876 Ras Ras family. The R 100.0 8.8E-29 1.9E-33 174.1 18.9 159 35-195 1-160 (160)
92 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 2E-29 4.4E-34 181.5 15.7 165 32-199 2-173 (183)
93 cd04149 Arf6 Arf6 subfamily. 100.0 7.4E-29 1.6E-33 176.2 16.9 154 32-193 8-167 (168)
94 cd04147 Ras_dva Ras-dva subfam 100.0 2E-28 4.4E-33 178.4 19.3 163 35-199 1-166 (198)
95 cd01870 RhoA_like RhoA-like su 100.0 3.9E-28 8.4E-33 173.6 20.4 159 34-195 2-174 (175)
96 cd04137 RheB Rheb (Ras Homolog 100.0 1.8E-28 3.8E-33 176.1 18.6 164 34-199 2-166 (180)
97 PLN00223 ADP-ribosylation fact 100.0 1.7E-28 3.6E-33 176.3 18.2 160 31-198 15-180 (181)
98 cd04158 ARD1 ARD1 subfamily. 100.0 2.1E-28 4.5E-33 174.1 17.7 157 35-199 1-164 (169)
99 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 2.8E-29 6.2E-34 177.7 12.7 153 35-193 1-163 (164)
100 smart00177 ARF ARF-like small 100.0 5.9E-29 1.3E-33 177.8 14.3 157 32-196 12-174 (175)
101 KOG0097 GTPase Rab14, small G 100.0 1.1E-28 2.4E-33 162.8 14.3 166 31-197 9-174 (215)
102 KOG0083 GTPase Rab26/Rab37, sm 100.0 8.4E-31 1.8E-35 171.0 4.0 161 38-199 2-163 (192)
103 cd04129 Rho2 Rho2 subfamily. 100.0 8.2E-28 1.8E-32 173.7 19.7 165 34-201 2-178 (187)
104 cd01893 Miro1 Miro1 subfamily. 100.0 7.1E-28 1.5E-32 170.9 18.9 160 34-197 1-165 (166)
105 KOG0395 Ras-related GTPase [Ge 100.0 1.6E-28 3.4E-33 177.2 15.5 164 32-197 2-166 (196)
106 cd04150 Arf1_5_like Arf1-Arf5- 100.0 8.7E-29 1.9E-33 174.3 13.6 152 34-193 1-158 (159)
107 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.4E-27 3.1E-32 173.4 20.0 162 34-195 1-199 (202)
108 cd04154 Arl2 Arl2 subfamily. 100.0 7.4E-28 1.6E-32 171.9 17.9 155 31-193 12-172 (173)
109 cd00157 Rho Rho (Ras homology) 100.0 1.5E-27 3.2E-32 169.8 18.9 157 34-193 1-170 (171)
110 PTZ00133 ADP-ribosylation fact 100.0 7.5E-28 1.6E-32 173.1 17.5 160 31-198 15-180 (182)
111 PTZ00132 GTP-binding nuclear p 100.0 3.7E-27 8E-32 173.9 21.2 166 29-198 5-170 (215)
112 cd04157 Arl6 Arl6 subfamily. 100.0 2.6E-27 5.7E-32 167.1 15.1 152 35-193 1-161 (162)
113 KOG0393 Ras-related small GTPa 100.0 7.6E-28 1.7E-32 170.3 12.0 167 31-199 2-182 (198)
114 cd04161 Arl2l1_Arl13_like Arl2 100.0 3.2E-27 7E-32 167.6 15.4 153 35-193 1-166 (167)
115 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.2E-26 2.5E-31 165.9 17.1 154 32-193 14-173 (174)
116 cd00879 Sar1 Sar1 subfamily. 100.0 2E-26 4.4E-31 166.8 17.7 157 31-195 17-190 (190)
117 cd04160 Arfrp1 Arfrp1 subfamil 99.9 1.7E-26 3.6E-31 163.9 16.4 152 35-193 1-166 (167)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.9 1.2E-26 2.7E-31 163.4 14.9 152 35-193 1-159 (160)
119 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.3E-26 2.8E-31 163.0 14.6 151 35-193 1-157 (158)
120 PLN00023 GTP-binding protein; 99.9 5.7E-26 1.2E-30 172.8 18.8 145 27-171 15-189 (334)
121 PF00025 Arf: ADP-ribosylation 99.9 6.2E-26 1.3E-30 162.1 17.6 157 31-195 12-175 (175)
122 cd04151 Arl1 Arl1 subfamily. 99.9 7.1E-26 1.5E-30 159.3 17.2 151 35-193 1-157 (158)
123 smart00178 SAR Sar1p-like memb 99.9 1.2E-25 2.5E-30 162.0 17.6 157 31-195 15-184 (184)
124 KOG0073 GTP-binding ADP-ribosy 99.9 9.8E-26 2.1E-30 152.1 15.0 163 30-198 13-180 (185)
125 PTZ00099 rab6; Provisional 99.9 3.9E-25 8.5E-30 157.8 17.9 141 57-198 4-144 (176)
126 KOG4252 GTP-binding protein [S 99.9 9.9E-28 2.1E-32 164.2 3.8 172 25-198 12-183 (246)
127 cd01890 LepA LepA subfamily. 99.9 3.5E-25 7.7E-30 158.8 16.2 158 35-198 2-179 (179)
128 cd01878 HflX HflX subfamily. 99.9 2.8E-25 6.1E-30 162.6 15.7 157 31-195 39-204 (204)
129 cd01897 NOG NOG1 is a nucleola 99.9 3.2E-25 7E-30 157.4 15.3 157 34-196 1-168 (168)
130 cd04159 Arl10_like Arl10-like 99.9 9.4E-25 2E-29 153.0 16.0 152 35-193 1-158 (159)
131 cd01898 Obg Obg subfamily. Th 99.9 6.1E-25 1.3E-29 156.2 14.8 158 35-195 2-170 (170)
132 PRK12299 obgE GTPase CgtA; Rev 99.9 1.3E-24 2.7E-29 168.8 16.7 165 33-199 158-331 (335)
133 KOG3883 Ras family small GTPas 99.9 6.8E-24 1.5E-28 141.7 17.1 173 30-202 6-181 (198)
134 cd04155 Arl3 Arl3 subfamily. 99.9 8.4E-24 1.8E-28 150.8 18.3 156 30-193 11-172 (173)
135 cd04171 SelB SelB subfamily. 99.9 5.6E-24 1.2E-28 150.2 15.6 155 34-193 1-163 (164)
136 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 6.9E-24 1.5E-28 150.4 15.4 159 35-197 2-167 (168)
137 TIGR00231 small_GTP small GTP- 99.9 1.7E-23 3.7E-28 146.3 16.4 158 33-192 1-160 (161)
138 TIGR03156 GTP_HflX GTP-binding 99.9 2.2E-23 4.8E-28 163.1 17.7 155 32-195 188-351 (351)
139 TIGR00436 era GTP-binding prot 99.9 2.1E-23 4.6E-28 158.7 16.6 157 35-199 2-167 (270)
140 TIGR02528 EutP ethanolamine ut 99.9 4.9E-24 1.1E-28 147.3 11.9 134 35-192 2-141 (142)
141 KOG0070 GTP-binding ADP-ribosy 99.9 9.3E-24 2E-28 146.1 11.8 164 27-198 11-180 (181)
142 COG1100 GTPase SAR1 and relate 99.9 1.1E-22 2.3E-27 150.5 18.3 164 33-197 5-186 (219)
143 cd00882 Ras_like_GTPase Ras-li 99.9 9.1E-23 2E-27 141.4 16.5 154 38-193 1-157 (157)
144 PRK04213 GTP-binding protein; 99.9 8.6E-24 1.9E-28 154.4 11.3 155 32-200 8-196 (201)
145 cd01891 TypA_BipA TypA (tyrosi 99.9 4.5E-23 9.8E-28 149.8 14.7 160 34-198 3-194 (194)
146 cd01879 FeoB Ferrous iron tran 99.9 6.6E-23 1.4E-27 143.9 15.1 149 38-196 1-157 (158)
147 PRK15494 era GTPase Era; Provi 99.9 2.4E-22 5.2E-27 157.0 19.4 159 30-199 49-219 (339)
148 TIGR02729 Obg_CgtA Obg family 99.9 9.7E-23 2.1E-27 158.2 16.1 160 33-195 157-328 (329)
149 PF02421 FeoB_N: Ferrous iron 99.9 2.7E-23 5.7E-28 143.7 11.2 148 34-191 1-156 (156)
150 KOG0075 GTP-binding ADP-ribosy 99.9 1.4E-23 3.1E-28 139.3 9.0 159 32-197 19-183 (186)
151 cd00881 GTP_translation_factor 99.9 4.2E-22 9.1E-27 143.7 16.1 156 35-197 1-188 (189)
152 cd01881 Obg_like The Obg-like 99.9 1.3E-22 2.9E-27 144.8 13.0 156 38-195 1-176 (176)
153 PF08477 Miro: Miro-like prote 99.9 1.1E-22 2.3E-27 136.4 11.1 114 35-150 1-119 (119)
154 cd04164 trmE TrmE (MnmE, ThdF, 99.9 5.7E-22 1.2E-26 138.8 14.9 146 34-195 2-156 (157)
155 cd01889 SelB_euk SelB subfamil 99.9 2.9E-22 6.3E-27 145.3 13.0 161 34-198 1-188 (192)
156 TIGR01393 lepA GTP-binding pro 99.9 1.3E-21 2.8E-26 162.4 18.6 161 33-199 3-183 (595)
157 PRK03003 GTP-binding protein D 99.9 1E-21 2.2E-26 160.0 16.6 155 32-197 37-200 (472)
158 PRK03003 GTP-binding protein D 99.9 5.1E-22 1.1E-26 161.7 14.9 158 32-196 210-382 (472)
159 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1E-21 2.2E-26 157.9 16.2 153 30-197 200-361 (442)
160 PRK12297 obgE GTPase CgtA; Rev 99.9 2.9E-21 6.3E-26 153.7 18.1 159 34-198 159-329 (424)
161 PRK11058 GTPase HflX; Provisio 99.9 1.5E-21 3.3E-26 156.0 16.4 156 34-197 198-363 (426)
162 PRK05291 trmE tRNA modificatio 99.9 5.5E-22 1.2E-26 160.2 13.8 150 31-197 213-371 (449)
163 TIGR00487 IF-2 translation ini 99.9 2.1E-21 4.7E-26 160.4 17.5 156 29-193 83-247 (587)
164 cd01894 EngA1 EngA1 subfamily. 99.9 8.4E-22 1.8E-26 138.0 12.9 147 37-195 1-157 (157)
165 cd01888 eIF2_gamma eIF2-gamma 99.9 1.4E-21 3.1E-26 142.8 14.5 164 34-199 1-202 (203)
166 COG1159 Era GTPase [General fu 99.9 2.3E-21 5E-26 144.1 15.5 163 31-199 4-175 (298)
167 PRK15467 ethanolamine utilizat 99.9 1.6E-21 3.5E-26 137.0 13.6 139 35-197 3-148 (158)
168 PRK00089 era GTPase Era; Revie 99.9 4.1E-21 9E-26 147.9 17.1 161 32-198 4-173 (292)
169 cd04163 Era Era subfamily. Er 99.9 6E-21 1.3E-25 134.7 15.6 157 33-195 3-168 (168)
170 PRK00454 engB GTP-binding prot 99.9 5.9E-21 1.3E-25 138.8 15.9 162 28-197 19-195 (196)
171 KOG1673 Ras GTPases [General f 99.9 1.5E-21 3.2E-26 131.0 11.4 168 29-198 16-188 (205)
172 PF00009 GTP_EFTU: Elongation 99.9 1.3E-21 2.8E-26 141.5 12.1 160 32-196 2-187 (188)
173 PRK12298 obgE GTPase CgtA; Rev 99.9 6.2E-21 1.3E-25 151.0 16.4 162 34-198 160-335 (390)
174 TIGR03594 GTPase_EngA ribosome 99.9 5.3E-21 1.2E-25 154.7 16.3 158 31-196 170-344 (429)
175 cd01895 EngA2 EngA2 subfamily. 99.9 1.2E-20 2.7E-25 134.0 15.7 155 33-194 2-173 (174)
176 PRK12296 obgE GTPase CgtA; Rev 99.9 8E-21 1.7E-25 153.1 15.7 163 32-198 158-342 (500)
177 KOG0071 GTP-binding ADP-ribosy 99.9 1.6E-20 3.5E-25 123.9 14.0 158 32-197 16-179 (180)
178 PRK05433 GTP-binding protein L 99.9 1.6E-20 3.5E-25 156.0 17.0 162 32-199 6-187 (600)
179 TIGR00475 selB selenocysteine- 99.9 1.8E-20 3.8E-25 155.5 16.0 158 34-198 1-168 (581)
180 PRK05306 infB translation init 99.9 1.1E-20 2.4E-25 159.7 15.0 158 30-194 287-450 (787)
181 CHL00189 infB translation init 99.9 1.6E-20 3.5E-25 157.5 15.1 159 30-195 241-409 (742)
182 TIGR03598 GTPase_YsxC ribosome 99.9 1.9E-20 4.1E-25 134.4 13.2 150 28-185 13-179 (179)
183 TIGR03594 GTPase_EngA ribosome 99.8 7.1E-20 1.5E-24 148.1 17.1 152 35-198 1-162 (429)
184 PRK00093 GTP-binding protein D 99.8 5E-20 1.1E-24 149.2 14.9 148 34-195 2-161 (435)
185 TIGR00437 feoB ferrous iron tr 99.8 3E-20 6.5E-25 154.3 13.9 146 40-195 1-154 (591)
186 cd00880 Era_like Era (E. coli 99.8 5.3E-20 1.1E-24 128.7 12.6 152 38-195 1-163 (163)
187 cd04105 SR_beta Signal recogni 99.8 1.6E-19 3.4E-24 131.9 15.4 117 35-153 2-123 (203)
188 PRK09554 feoB ferrous iron tra 99.8 1.9E-19 4E-24 152.9 17.8 154 33-196 3-168 (772)
189 COG1160 Predicted GTPases [Gen 99.8 9E-20 2E-24 142.7 13.1 152 34-196 4-165 (444)
190 PRK09518 bifunctional cytidyla 99.8 3.5E-19 7.7E-24 151.4 17.0 155 32-197 274-437 (712)
191 TIGR03680 eif2g_arch translati 99.8 2E-19 4.3E-24 144.0 14.5 167 30-198 1-198 (406)
192 PRK00093 GTP-binding protein D 99.8 2.6E-19 5.7E-24 145.0 15.2 157 31-195 171-343 (435)
193 PRK09518 bifunctional cytidyla 99.8 3.2E-19 6.9E-24 151.7 15.8 157 32-197 449-622 (712)
194 TIGR01394 TypA_BipA GTP-bindin 99.8 4.2E-19 9.2E-24 147.2 15.8 159 34-199 2-194 (594)
195 KOG0076 GTP-binding ADP-ribosy 99.8 3.2E-20 7E-25 126.8 7.5 162 30-198 14-189 (197)
196 PRK04000 translation initiatio 99.8 6.1E-19 1.3E-23 141.2 15.4 169 28-198 4-203 (411)
197 TIGR00483 EF-1_alpha translati 99.8 4.2E-19 9E-24 143.2 14.5 151 31-186 5-197 (426)
198 COG2229 Predicted GTPase [Gene 99.8 1.8E-18 3.9E-23 119.8 15.1 157 31-194 8-176 (187)
199 cd01884 EF_Tu EF-Tu subfamily. 99.8 2.1E-18 4.5E-23 124.9 16.2 156 33-195 2-192 (195)
200 cd01896 DRG The developmentall 99.8 3.1E-18 6.8E-23 127.4 17.3 152 35-196 2-226 (233)
201 PRK10218 GTP-binding protein; 99.8 2.1E-18 4.6E-23 142.9 17.9 163 32-199 4-198 (607)
202 KOG1423 Ras-like GTPase ERA [C 99.8 2.2E-18 4.8E-23 128.2 16.0 170 26-200 65-275 (379)
203 PRK12317 elongation factor 1-a 99.8 6.9E-19 1.5E-23 142.0 14.4 152 30-186 3-195 (425)
204 PRK10512 selenocysteinyl-tRNA- 99.8 1.5E-18 3.4E-23 144.5 16.8 157 35-197 2-167 (614)
205 cd04166 CysN_ATPS CysN_ATPS su 99.8 5.4E-19 1.2E-23 129.6 12.3 146 35-186 1-184 (208)
206 TIGR00491 aIF-2 translation in 99.8 1.9E-18 4E-23 142.9 16.1 154 33-193 4-213 (590)
207 KOG4423 GTP-binding protein-li 99.8 1.6E-21 3.6E-26 134.5 -2.0 170 30-199 22-197 (229)
208 KOG0462 Elongation factor-type 99.8 1.4E-18 3.1E-23 137.8 13.8 171 26-200 53-239 (650)
209 KOG0074 GTP-binding ADP-ribosy 99.8 6.9E-19 1.5E-23 116.4 9.9 159 31-196 15-179 (185)
210 cd01876 YihA_EngB The YihA (En 99.8 3.1E-18 6.8E-23 121.0 13.8 151 35-195 1-170 (170)
211 cd04168 TetM_like Tet(M)-like 99.8 9E-18 2E-22 125.2 16.8 112 35-153 1-130 (237)
212 cd04167 Snu114p Snu114p subfam 99.8 1.8E-18 3.8E-23 127.4 12.4 159 35-197 2-212 (213)
213 KOG0096 GTPase Ran/TC4/GSP1 (n 99.8 7.6E-19 1.6E-23 121.8 9.6 163 31-197 8-170 (216)
214 COG1160 Predicted GTPases [Gen 99.8 4E-18 8.8E-23 133.6 14.5 157 32-195 177-350 (444)
215 COG0486 ThdF Predicted GTPase 99.8 2.7E-18 5.9E-23 134.8 12.9 161 25-198 209-378 (454)
216 PRK12736 elongation factor Tu; 99.8 1.5E-17 3.3E-22 132.7 16.9 162 30-198 9-203 (394)
217 KOG0072 GTP-binding ADP-ribosy 99.8 2E-19 4.4E-24 119.2 4.6 162 32-199 17-182 (182)
218 COG0218 Predicted GTPase [Gene 99.8 1.6E-17 3.4E-22 117.5 14.4 161 29-197 20-198 (200)
219 PRK04004 translation initiatio 99.8 1.9E-17 4E-22 137.4 16.8 156 31-193 4-215 (586)
220 KOG1707 Predicted Ras related/ 99.8 2.5E-18 5.3E-23 137.4 10.6 167 31-200 7-179 (625)
221 cd01883 EF1_alpha Eukaryotic e 99.8 4.2E-18 9.2E-23 125.8 10.9 146 35-185 1-194 (219)
222 PF10662 PduV-EutP: Ethanolami 99.8 8.9E-18 1.9E-22 113.8 11.4 135 35-192 3-142 (143)
223 PRK12735 elongation factor Tu; 99.8 5.1E-17 1.1E-21 129.8 17.5 162 30-198 9-205 (396)
224 COG2262 HflX GTPases [General 99.8 6E-17 1.3E-21 125.3 16.6 159 31-197 190-357 (411)
225 cd04165 GTPBP1_like GTPBP1-lik 99.8 2.3E-17 4.9E-22 121.9 13.4 154 35-192 1-219 (224)
226 TIGR00485 EF-Tu translation el 99.8 4.7E-17 1E-21 130.0 15.9 160 30-196 9-201 (394)
227 cd01885 EF2 EF2 (for archaea a 99.8 3E-17 6.5E-22 120.9 13.0 114 35-152 2-138 (222)
228 CHL00071 tufA elongation facto 99.8 6.7E-17 1.4E-21 129.6 16.0 160 30-196 9-211 (409)
229 COG0532 InfB Translation initi 99.7 1E-16 2.2E-21 127.7 16.3 156 32-194 4-168 (509)
230 COG0370 FeoB Fe2+ transport sy 99.7 7.5E-17 1.6E-21 131.8 15.5 157 33-199 3-167 (653)
231 PLN03126 Elongation factor Tu; 99.7 1.1E-16 2.3E-21 129.9 15.7 147 29-182 77-248 (478)
232 COG0481 LepA Membrane GTPase L 99.7 7.6E-17 1.6E-21 126.3 14.0 164 31-200 7-190 (603)
233 COG1084 Predicted GTPase [Gene 99.7 1.2E-16 2.7E-21 120.2 14.3 160 32-198 167-338 (346)
234 PRK00049 elongation factor Tu; 99.7 3E-16 6.4E-21 125.3 17.5 162 30-198 9-205 (396)
235 cd04104 p47_IIGP_like p47 (47- 99.7 6.5E-17 1.4E-21 117.6 12.2 160 33-199 1-187 (197)
236 KOG1145 Mitochondrial translat 99.7 3E-16 6.6E-21 124.8 16.3 162 24-193 144-313 (683)
237 PLN00043 elongation factor 1-a 99.7 1.4E-16 3.1E-21 128.5 14.3 148 31-185 5-202 (447)
238 COG3596 Predicted GTPase [Gene 99.7 5.5E-17 1.2E-21 119.4 10.4 164 30-198 36-224 (296)
239 PRK05124 cysN sulfate adenylyl 99.7 2.1E-16 4.6E-21 128.5 13.7 152 30-187 24-216 (474)
240 PLN03127 Elongation factor Tu; 99.7 5.6E-16 1.2E-20 125.0 15.9 163 29-198 57-254 (447)
241 cd04169 RF3 RF3 subfamily. Pe 99.7 1.2E-16 2.6E-21 121.1 10.9 116 34-154 3-138 (267)
242 PTZ00327 eukaryotic translatio 99.7 4E-16 8.7E-21 125.8 14.3 169 28-198 29-235 (460)
243 KOG1489 Predicted GTP-binding 99.7 3.7E-16 7.9E-21 117.0 12.8 156 34-194 197-365 (366)
244 PTZ00141 elongation factor 1- 99.7 6.3E-16 1.4E-20 124.9 14.9 150 31-186 5-203 (446)
245 PF04670 Gtr1_RagA: Gtr1/RagA 99.7 2.8E-16 6.1E-21 115.8 11.6 160 35-198 1-178 (232)
246 PRK00741 prfC peptide chain re 99.7 8.8E-16 1.9E-20 126.0 15.4 116 31-153 8-145 (526)
247 TIGR02034 CysN sulfate adenyly 99.7 4.5E-16 9.8E-21 124.7 13.0 147 34-186 1-187 (406)
248 cd04170 EF-G_bact Elongation f 99.7 1.1E-16 2.5E-21 121.7 9.0 148 35-191 1-168 (268)
249 cd01886 EF-G Elongation factor 99.7 8.5E-16 1.8E-20 116.5 13.5 112 35-153 1-130 (270)
250 cd01850 CDC_Septin CDC/Septin. 99.7 1.3E-15 2.9E-20 115.9 14.5 143 32-180 3-186 (276)
251 COG1163 DRG Predicted GTPase [ 99.7 3.4E-15 7.4E-20 112.2 16.1 155 32-196 62-289 (365)
252 PRK13351 elongation factor G; 99.7 6.5E-16 1.4E-20 131.4 13.7 116 31-153 6-139 (687)
253 cd01852 AIG1 AIG1 (avrRpt2-ind 99.7 2.6E-15 5.7E-20 109.2 14.8 160 34-198 1-186 (196)
254 PRK05506 bifunctional sulfate 99.7 1E-15 2.2E-20 129.0 14.0 153 28-186 19-211 (632)
255 KOG3905 Dynein light intermedi 99.7 2.7E-15 5.7E-20 112.8 14.0 171 26-199 45-293 (473)
256 PF01926 MMR_HSR1: 50S ribosom 99.7 3.6E-15 7.9E-20 99.4 13.3 105 35-148 1-116 (116)
257 TIGR00503 prfC peptide chain r 99.7 7.6E-15 1.7E-19 120.6 16.5 117 31-152 9-145 (527)
258 KOG0077 Vesicle coat complex C 99.7 7.5E-16 1.6E-20 104.8 8.6 156 32-195 19-192 (193)
259 PRK12739 elongation factor G; 99.6 1.8E-14 3.9E-19 122.6 18.2 117 30-153 5-139 (691)
260 cd01899 Ygr210 Ygr210 subfamil 99.6 6E-15 1.3E-19 114.0 13.6 160 36-198 1-271 (318)
261 COG5256 TEF1 Translation elong 99.6 4.9E-15 1.1E-19 114.8 12.1 152 30-186 4-201 (428)
262 TIGR00484 EF-G translation elo 99.6 3E-14 6.5E-19 121.2 17.4 116 31-153 8-141 (689)
263 PRK09866 hypothetical protein; 99.6 4.2E-14 9E-19 115.9 16.7 109 84-194 231-351 (741)
264 COG0536 Obg Predicted GTPase [ 99.6 1.6E-14 3.5E-19 109.4 12.7 162 35-198 161-335 (369)
265 PRK00007 elongation factor G; 99.6 9E-14 2E-18 118.3 18.4 117 30-153 7-141 (693)
266 PF05783 DLIC: Dynein light in 99.6 3.8E-14 8.1E-19 114.3 15.1 168 30-200 22-268 (472)
267 PF09439 SRPRB: Signal recogni 99.6 1.6E-15 3.5E-20 107.2 6.2 118 33-154 3-127 (181)
268 COG1217 TypA Predicted membran 99.6 2.5E-14 5.4E-19 112.2 13.1 164 32-200 4-199 (603)
269 COG5257 GCD11 Translation init 99.6 6.8E-15 1.5E-19 110.4 8.9 168 31-200 8-206 (415)
270 KOG1191 Mitochondrial GTPase [ 99.6 1.1E-14 2.5E-19 114.7 9.6 167 28-197 263-451 (531)
271 PRK12740 elongation factor G; 99.6 6.5E-14 1.4E-18 119.1 12.9 108 39-153 1-126 (668)
272 PRK09602 translation-associate 99.5 2.9E-13 6.4E-18 107.6 14.8 84 34-117 2-113 (396)
273 KOG0090 Signal recognition par 99.5 2E-13 4.4E-18 97.0 11.4 156 33-195 38-238 (238)
274 COG2895 CysN GTPases - Sulfate 99.5 2.2E-13 4.7E-18 103.6 12.3 149 31-185 4-192 (431)
275 PF04548 AIG1: AIG1 family; I 99.5 1.5E-13 3.2E-18 101.0 11.3 162 34-199 1-189 (212)
276 KOG1707 Predicted Ras related/ 99.5 1.1E-12 2.3E-17 105.6 15.2 165 29-199 421-586 (625)
277 cd01853 Toc34_like Toc34-like 99.5 7.9E-13 1.7E-17 99.1 13.1 123 28-154 26-164 (249)
278 KOG1490 GTP-binding protein CR 99.5 1.6E-13 3.6E-18 108.5 9.2 160 31-196 166-341 (620)
279 TIGR00991 3a0901s02IAP34 GTP-b 99.5 1.6E-12 3.4E-17 99.1 13.5 120 31-154 36-168 (313)
280 cd00066 G-alpha G protein alph 99.5 1.2E-12 2.6E-17 101.8 12.8 117 83-199 161-314 (317)
281 PRK14845 translation initiatio 99.5 1.9E-12 4.1E-17 112.7 15.3 146 45-194 473-671 (1049)
282 KOG0082 G-protein alpha subuni 99.5 2.4E-12 5.1E-17 99.4 13.8 116 83-198 195-346 (354)
283 TIGR00490 aEF-2 translation el 99.5 4E-13 8.6E-18 114.8 10.5 118 31-153 17-152 (720)
284 TIGR00157 ribosome small subun 99.4 4.8E-13 1E-17 100.3 8.5 96 94-193 24-120 (245)
285 TIGR00101 ureG urease accessor 99.4 2.7E-12 5.8E-17 93.3 12.0 104 83-197 92-197 (199)
286 PRK13768 GTPase; Provisional 99.4 9.9E-13 2.1E-17 99.1 9.5 112 84-196 98-247 (253)
287 PRK07560 elongation factor EF- 99.4 3.9E-12 8.4E-17 109.0 13.9 119 31-153 18-153 (731)
288 PTZ00258 GTP-binding protein; 99.4 4.9E-12 1.1E-16 99.8 13.4 88 30-117 18-126 (390)
289 PLN00116 translation elongatio 99.4 1.4E-12 3E-17 113.1 10.5 119 30-152 16-163 (843)
290 KOG1532 GTPase XAB1, interacts 99.4 1.9E-12 4.1E-17 95.6 9.6 171 27-197 13-265 (366)
291 COG4917 EutP Ethanolamine util 99.4 9E-13 2E-17 85.8 6.8 136 35-193 3-143 (148)
292 TIGR00073 hypB hydrogenase acc 99.4 5.9E-12 1.3E-16 92.3 11.7 153 32-195 21-206 (207)
293 TIGR02836 spore_IV_A stage IV 99.4 3.2E-11 6.9E-16 94.6 15.9 155 33-192 17-233 (492)
294 PF05049 IIGP: Interferon-indu 99.4 3.2E-12 6.9E-17 99.9 10.1 159 32-198 34-220 (376)
295 cd01882 BMS1 Bms1. Bms1 is an 99.4 9.5E-12 2.1E-16 92.3 12.3 141 28-181 34-181 (225)
296 smart00275 G_alpha G protein a 99.4 1.9E-11 4.1E-16 95.8 14.4 116 83-198 184-336 (342)
297 PF00350 Dynamin_N: Dynamin fa 99.4 4.3E-12 9.3E-17 89.9 9.5 111 36-149 1-168 (168)
298 PRK09435 membrane ATPase/prote 99.4 1.9E-11 4.1E-16 94.9 13.5 103 83-196 149-260 (332)
299 PTZ00416 elongation factor 2; 99.4 3.8E-12 8.2E-17 110.2 10.6 118 31-152 17-157 (836)
300 smart00010 small_GTPase Small 99.4 1.9E-11 4E-16 82.1 11.5 114 34-185 1-115 (124)
301 KOG1144 Translation initiation 99.4 3.6E-12 7.9E-17 105.0 9.4 168 24-195 466-686 (1064)
302 KOG0461 Selenocysteine-specifi 99.4 2.5E-11 5.3E-16 92.5 13.0 165 32-200 6-197 (522)
303 PF03029 ATP_bind_1: Conserved 99.3 7.2E-13 1.6E-17 98.7 1.9 112 84-195 92-236 (238)
304 PRK09601 GTP-binding protein Y 99.3 1.6E-10 3.4E-15 90.4 13.8 84 34-117 3-107 (364)
305 TIGR00993 3a0901s04IAP86 chlor 99.3 1.1E-10 2.3E-15 96.5 13.0 125 26-153 111-250 (763)
306 KOG0458 Elongation factor 1 al 99.3 1.8E-10 3.8E-15 93.0 14.0 154 29-187 173-373 (603)
307 KOG3886 GTP-binding protein [S 99.2 3.8E-11 8.2E-16 86.6 8.2 160 33-196 4-178 (295)
308 smart00053 DYNc Dynamin, GTPas 99.2 1.4E-10 2.9E-15 86.3 11.1 69 83-154 125-207 (240)
309 PF00735 Septin: Septin; Inte 99.2 4.4E-10 9.5E-15 85.8 14.0 140 32-176 3-181 (281)
310 KOG0410 Predicted GTP binding 99.2 7.5E-11 1.6E-15 89.1 9.5 152 32-196 177-341 (410)
311 KOG1486 GTP-binding protein DR 99.2 2.2E-09 4.7E-14 78.7 15.8 154 33-196 62-288 (364)
312 COG4108 PrfC Peptide chain rel 99.2 1.8E-10 4E-15 90.2 10.8 113 33-152 12-146 (528)
313 COG0480 FusA Translation elong 99.2 1.4E-10 3.1E-15 97.7 10.8 119 30-154 7-143 (697)
314 COG0378 HypB Ni2+-binding GTPa 99.2 3.7E-11 8.1E-16 84.8 6.1 151 33-195 13-200 (202)
315 cd01900 YchF YchF subfamily. 99.2 3.4E-10 7.3E-15 85.8 11.7 82 36-117 1-103 (274)
316 TIGR00750 lao LAO/AO transport 99.2 2.1E-10 4.6E-15 88.7 10.8 102 83-195 127-237 (300)
317 KOG0466 Translation initiation 99.2 1.4E-11 3.1E-16 92.3 3.2 170 28-199 33-244 (466)
318 COG0050 TufB GTPases - transla 99.2 4.2E-10 9E-15 84.1 10.9 166 31-201 10-206 (394)
319 COG3276 SelB Selenocysteine-sp 99.1 8.1E-10 1.8E-14 86.8 11.5 155 35-196 2-162 (447)
320 COG1703 ArgK Putative periplas 99.1 1.1E-09 2.4E-14 82.2 10.7 155 31-196 49-254 (323)
321 PF03308 ArgK: ArgK protein; 99.1 1E-10 2.2E-15 86.5 3.0 152 32-195 28-229 (266)
322 PRK12289 GTPase RsgA; Reviewed 99.0 1.8E-09 3.8E-14 84.8 9.8 93 97-194 80-173 (352)
323 PRK10463 hydrogenase nickel in 99.0 3.8E-09 8.2E-14 80.2 11.3 55 140-194 231-287 (290)
324 cd01855 YqeH YqeH. YqeH is an 99.0 3E-09 6.5E-14 77.0 9.7 96 94-196 22-125 (190)
325 cd01859 MJ1464 MJ1464. This f 99.0 6.5E-10 1.4E-14 77.9 5.7 96 96-197 2-97 (156)
326 KOG0468 U5 snRNP-specific prot 99.0 2.6E-09 5.6E-14 87.7 9.4 117 31-151 126-261 (971)
327 KOG2655 Septin family protein 99.0 2E-08 4.2E-13 78.0 13.5 148 28-180 16-201 (366)
328 cd01854 YjeQ_engC YjeQ/EngC. 99.0 3.7E-09 7.9E-14 81.3 8.7 88 101-193 73-161 (287)
329 COG5019 CDC3 Septin family pro 98.9 3E-08 6.6E-13 76.5 12.9 141 29-175 19-200 (373)
330 PF00503 G-alpha: G-protein al 98.9 3.3E-08 7.1E-13 79.3 13.8 113 83-195 236-389 (389)
331 KOG1547 Septin CDC10 and relat 98.9 1.7E-08 3.8E-13 73.5 10.6 157 29-190 42-237 (336)
332 PRK12288 GTPase RsgA; Reviewed 98.9 8.5E-09 1.8E-13 81.0 9.5 88 104-194 118-206 (347)
333 KOG1954 Endocytosis/signaling 98.9 8.8E-09 1.9E-13 79.4 8.6 123 31-156 56-228 (532)
334 PRK00098 GTPase RsgA; Reviewed 98.9 6E-09 1.3E-13 80.5 7.8 86 103-192 77-163 (298)
335 COG5258 GTPBP1 GTPase [General 98.9 2.6E-08 5.7E-13 77.2 10.7 164 30-198 114-340 (527)
336 COG0012 Predicted GTPase, prob 98.9 7.1E-08 1.5E-12 74.9 13.2 85 33-117 2-108 (372)
337 KOG0705 GTPase-activating prot 98.8 6.4E-09 1.4E-13 83.7 6.1 158 31-196 28-189 (749)
338 KOG0460 Mitochondrial translat 98.8 9.3E-08 2E-12 73.1 11.8 167 28-198 49-247 (449)
339 KOG3887 Predicted small GTPase 98.8 1.3E-08 2.8E-13 74.3 6.7 160 34-198 28-204 (347)
340 COG5192 BMS1 GTP-binding prote 98.8 5.4E-08 1.2E-12 79.0 10.4 142 28-181 64-211 (1077)
341 KOG0448 Mitofusin 1 GTPase, in 98.8 1.4E-07 2.9E-12 78.0 12.7 147 31-181 107-311 (749)
342 KOG2486 Predicted GTPase [Gene 98.8 1.1E-08 2.4E-13 76.0 5.0 156 30-193 133-313 (320)
343 TIGR03597 GTPase_YqeH ribosome 98.8 5.5E-08 1.2E-12 77.1 9.0 95 93-194 50-151 (360)
344 KOG1487 GTP-binding protein DR 98.8 1.8E-07 3.9E-12 69.1 10.8 153 34-196 60-281 (358)
345 cd01858 NGP_1 NGP-1. Autoanti 98.8 2.9E-08 6.3E-13 69.6 6.6 90 103-195 5-94 (157)
346 PF09547 Spore_IV_A: Stage IV 98.8 9.9E-07 2.1E-11 69.8 15.5 154 33-191 17-232 (492)
347 cd04178 Nucleostemin_like Nucl 98.7 4.7E-08 1E-12 69.4 6.9 57 31-92 115-171 (172)
348 cd01858 NGP_1 NGP-1. Autoanti 98.7 5E-08 1.1E-12 68.4 7.0 56 32-92 101-156 (157)
349 cd01857 HSR1_MMR1 HSR1/MMR1. 98.7 5.2E-08 1.1E-12 67.1 6.2 54 35-93 85-138 (141)
350 KOG1143 Predicted translation 98.7 1.2E-07 2.7E-12 73.4 8.5 160 27-190 161-382 (591)
351 cd01849 YlqF_related_GTPase Yl 98.6 1.2E-07 2.7E-12 66.2 7.0 82 108-194 1-83 (155)
352 KOG0467 Translation elongation 98.6 1.5E-07 3.3E-12 78.5 7.4 115 32-151 8-136 (887)
353 cd01851 GBP Guanylate-binding 98.6 1.2E-06 2.7E-11 64.9 11.5 89 31-119 5-104 (224)
354 cd01856 YlqF YlqF. Proteins o 98.6 1.9E-07 4.2E-12 66.3 6.6 98 90-195 2-100 (171)
355 cd01856 YlqF YlqF. Proteins o 98.6 2.7E-07 5.8E-12 65.6 6.9 58 31-93 113-170 (171)
356 cd01855 YqeH YqeH. YqeH is an 98.5 1.9E-07 4E-12 67.6 6.0 57 33-93 127-190 (190)
357 TIGR03596 GTPase_YlqF ribosome 98.5 3E-07 6.5E-12 70.4 7.3 58 31-93 116-173 (276)
358 KOG0464 Elongation factor G [T 98.5 1.4E-07 3.1E-12 74.0 5.3 119 31-154 35-169 (753)
359 KOG0099 G protein subunit Galp 98.5 4.1E-07 8.8E-12 67.4 7.3 116 83-198 202-371 (379)
360 PRK09563 rbgA GTPase YlqF; Rev 98.5 4.4E-07 9.6E-12 69.8 7.9 59 31-94 119-177 (287)
361 PF03193 DUF258: Protein of un 98.5 1.4E-07 3E-12 65.8 4.6 60 34-97 36-101 (161)
362 COG1618 Predicted nucleotide k 98.5 1.4E-05 3E-10 55.2 13.6 148 32-197 4-177 (179)
363 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 3.3E-07 7.1E-12 63.1 5.9 76 102-183 7-84 (141)
364 TIGR03596 GTPase_YlqF ribosome 98.5 4.2E-07 9.1E-12 69.6 6.6 99 91-197 5-104 (276)
365 cd01859 MJ1464 MJ1464. This f 98.5 6.8E-07 1.5E-11 62.5 7.1 56 32-92 100-155 (156)
366 TIGR00092 GTP-binding protein 98.5 5.8E-07 1.2E-11 70.7 7.2 84 34-117 3-108 (368)
367 cd01849 YlqF_related_GTPase Yl 98.5 7E-07 1.5E-11 62.4 6.9 57 31-93 98-155 (155)
368 COG1161 Predicted GTPases [Gen 98.4 6.8E-07 1.5E-11 69.8 6.7 58 31-93 130-187 (322)
369 cd03112 CobW_like The function 98.4 2.7E-06 5.8E-11 59.7 9.0 21 36-56 3-23 (158)
370 PRK12288 GTPase RsgA; Reviewed 98.4 6E-07 1.3E-11 70.6 6.0 59 35-97 207-271 (347)
371 PRK01889 GTPase RsgA; Reviewed 98.4 1.4E-06 3.1E-11 68.9 8.1 83 104-192 110-193 (356)
372 TIGR03348 VI_IcmF type VI secr 98.4 8.1E-07 1.8E-11 80.2 7.4 116 34-154 112-258 (1169)
373 KOG0463 GTP-binding protein GP 98.4 4.1E-06 8.9E-11 65.2 9.8 161 24-188 124-350 (641)
374 PRK10416 signal recognition pa 98.4 1.1E-06 2.5E-11 68.3 6.7 92 83-187 197-301 (318)
375 PRK09563 rbgA GTPase YlqF; Rev 98.3 1.2E-06 2.7E-11 67.4 6.2 99 90-196 7-106 (287)
376 PRK13796 GTPase YqeH; Provisio 98.3 5.3E-06 1.2E-10 66.0 9.8 94 95-195 58-158 (365)
377 TIGR00064 ftsY signal recognit 98.3 4.3E-06 9.3E-11 63.8 8.8 92 83-187 155-259 (272)
378 KOG1491 Predicted GTP-binding 98.3 1.8E-06 4E-11 66.1 6.5 87 31-117 18-125 (391)
379 PRK12289 GTPase RsgA; Reviewed 98.3 1.4E-06 3E-11 68.7 5.9 56 35-94 174-235 (352)
380 COG1162 Predicted GTPases [Gen 98.3 1.3E-06 2.9E-11 66.4 5.5 59 35-97 166-230 (301)
381 PRK14974 cell division protein 98.3 8.3E-07 1.8E-11 69.4 4.4 93 83-188 223-322 (336)
382 TIGR00157 ribosome small subun 98.2 3.1E-06 6.6E-11 63.7 6.1 57 34-95 121-183 (245)
383 PRK13695 putative NTPase; Prov 98.2 5.4E-05 1.2E-09 53.9 12.1 83 100-196 90-173 (174)
384 KOG0447 Dynamin-like GTP bindi 98.2 9.4E-05 2E-09 60.5 14.4 83 83-167 412-507 (980)
385 PF03266 NTPase_1: NTPase; In 98.2 1.2E-05 2.6E-10 56.9 8.0 136 35-184 1-163 (168)
386 TIGR03597 GTPase_YqeH ribosome 98.2 5.2E-06 1.1E-10 65.9 6.3 57 34-94 155-215 (360)
387 PRK13796 GTPase YqeH; Provisio 98.1 4.8E-06 1E-10 66.2 5.9 57 34-94 161-221 (365)
388 KOG0085 G protein subunit Galp 98.1 5.3E-06 1.2E-10 60.5 5.2 116 83-198 199-351 (359)
389 KOG4273 Uncharacterized conser 98.1 6.5E-05 1.4E-09 55.6 10.6 157 33-195 4-221 (418)
390 PRK14722 flhF flagellar biosyn 98.1 1.9E-05 4.1E-10 62.6 8.3 142 32-177 136-315 (374)
391 COG1162 Predicted GTPases [Gen 98.1 3.2E-05 6.9E-10 59.0 9.0 95 97-194 70-165 (301)
392 PF00448 SRP54: SRP54-type pro 98.1 6.8E-05 1.5E-09 54.4 10.4 82 83-177 84-174 (196)
393 TIGR01425 SRP54_euk signal rec 98.1 3.6E-05 7.8E-10 62.0 9.5 85 83-177 183-273 (429)
394 KOG0465 Mitochondrial elongati 98.1 5E-06 1.1E-10 68.2 4.6 122 28-156 34-173 (721)
395 KOG3859 Septins (P-loop GTPase 98.1 3.3E-05 7.1E-10 58.0 8.2 65 28-92 37-104 (406)
396 PRK00098 GTPase RsgA; Reviewed 98.0 1.3E-05 2.9E-10 62.0 6.4 25 34-58 165-189 (298)
397 cd01854 YjeQ_engC YjeQ/EngC. 98.0 1.4E-05 3E-10 61.6 6.1 59 34-96 162-226 (287)
398 COG0523 Putative GTPases (G3E 98.0 0.00017 3.6E-09 56.3 11.4 137 36-180 4-186 (323)
399 KOG0459 Polypeptide release fa 98.0 2E-05 4.3E-10 61.9 6.2 158 26-188 72-278 (501)
400 PF06858 NOG1: Nucleolar GTP-b 98.0 4E-05 8.7E-10 43.4 5.6 44 106-150 13-58 (58)
401 PRK12727 flagellar biosynthesi 98.0 7.5E-05 1.6E-09 61.5 9.4 135 31-177 348-518 (559)
402 PRK11889 flhF flagellar biosyn 97.9 7.5E-05 1.6E-09 59.4 8.4 85 83-177 321-411 (436)
403 COG3523 IcmF Type VI protein s 97.8 5E-05 1.1E-09 67.8 7.1 114 36-154 128-271 (1188)
404 cd03114 ArgK-like The function 97.8 9.9E-05 2.2E-09 51.1 7.2 57 83-150 92-148 (148)
405 cd03115 SRP The signal recogni 97.8 0.00014 3E-09 51.7 8.1 82 83-174 83-170 (173)
406 KOG0469 Elongation factor 2 [T 97.8 6.4E-05 1.4E-09 60.8 6.7 117 31-151 17-162 (842)
407 KOG1424 Predicted GTP-binding 97.8 4.8E-05 1E-09 61.5 5.8 61 27-93 308-369 (562)
408 PRK11537 putative GTP-binding 97.8 0.00053 1.1E-08 53.6 10.9 22 35-56 6-27 (318)
409 cd02042 ParA ParA and ParB of 97.7 0.00021 4.5E-09 46.3 7.2 82 36-130 2-84 (104)
410 COG1419 FlhF Flagellar GTP-bin 97.7 0.0011 2.3E-08 52.9 12.0 131 33-173 203-368 (407)
411 PRK14721 flhF flagellar biosyn 97.7 0.00017 3.6E-09 58.2 7.6 85 83-177 270-360 (420)
412 cd00009 AAA The AAA+ (ATPases 97.7 0.00049 1.1E-08 46.7 9.1 25 33-57 19-43 (151)
413 cd01983 Fer4_NifH The Fer4_Nif 97.7 0.00037 8.1E-09 44.0 7.7 69 36-119 2-71 (99)
414 PRK00771 signal recognition pa 97.7 0.00031 6.6E-09 57.1 8.5 85 83-177 176-266 (437)
415 cd02038 FleN-like FleN is a me 97.7 0.00026 5.6E-09 48.5 7.0 106 37-151 4-109 (139)
416 KOG2484 GTPase [General functi 97.7 6.5E-05 1.4E-09 59.0 4.3 66 23-93 242-307 (435)
417 PRK10867 signal recognition pa 97.6 8.4E-05 1.8E-09 60.2 5.0 85 83-178 184-275 (433)
418 KOG2485 Conserved ATP/GTP bind 97.6 0.00018 3.9E-09 54.9 6.0 60 31-93 141-206 (335)
419 TIGR00959 ffh signal recogniti 97.6 7.2E-05 1.6E-09 60.5 4.2 85 83-178 183-274 (428)
420 COG3640 CooC CO dehydrogenase 97.6 0.001 2.2E-08 49.0 9.3 62 84-151 135-197 (255)
421 cd03111 CpaE_like This protein 97.6 0.00074 1.6E-08 44.0 7.8 100 39-148 6-106 (106)
422 PRK12726 flagellar biosynthesi 97.6 0.0014 3E-08 52.1 10.6 85 83-177 286-376 (407)
423 PRK05703 flhF flagellar biosyn 97.5 0.00029 6.4E-09 57.2 7.0 85 83-177 300-391 (424)
424 PF05621 TniB: Bacterial TniB 97.5 0.00069 1.5E-08 51.9 8.2 105 29-148 57-189 (302)
425 PRK12724 flagellar biosynthesi 97.5 0.0025 5.5E-08 51.4 11.7 94 83-186 300-404 (432)
426 PF11111 CENP-M: Centromere pr 97.5 0.0098 2.1E-07 41.8 12.6 141 30-196 12-153 (176)
427 PF13207 AAA_17: AAA domain; P 97.5 0.00012 2.7E-09 48.6 3.2 22 35-56 1-22 (121)
428 PRK06995 flhF flagellar biosyn 97.5 0.003 6.4E-08 52.0 11.6 22 34-55 257-278 (484)
429 PRK14723 flhF flagellar biosyn 97.4 0.0014 3E-08 56.6 9.9 87 83-177 264-357 (767)
430 PRK12723 flagellar biosynthesi 97.4 0.0028 6.1E-08 50.8 11.1 84 83-176 255-345 (388)
431 PRK06731 flhF flagellar biosyn 97.4 0.0042 9.1E-08 47.4 11.5 85 83-177 155-245 (270)
432 PRK08118 topology modulation p 97.4 0.00015 3.3E-09 51.3 3.3 22 35-56 3-24 (167)
433 COG0563 Adk Adenylate kinase a 97.4 0.00015 3.2E-09 51.8 3.2 23 34-56 1-23 (178)
434 PF13555 AAA_29: P-loop contai 97.4 0.0002 4.4E-09 41.6 3.1 22 35-56 25-46 (62)
435 PRK07261 topology modulation p 97.4 0.00017 3.6E-09 51.3 3.3 22 35-56 2-23 (171)
436 PF13671 AAA_33: AAA domain; P 97.4 0.00015 3.2E-09 49.7 2.9 20 36-55 2-21 (143)
437 TIGR02475 CobW cobalamin biosy 97.4 0.0028 6E-08 50.1 10.1 21 36-56 7-27 (341)
438 KOG0780 Signal recognition par 97.4 0.00011 2.5E-09 57.6 2.2 42 83-125 184-232 (483)
439 KOG1534 Putative transcription 97.3 0.00027 5.8E-09 51.1 3.5 22 34-55 4-25 (273)
440 cd03222 ABC_RNaseL_inhibitor T 97.3 0.0028 6.2E-08 45.2 8.9 27 31-57 23-49 (177)
441 cd02036 MinD Bacterial cell di 97.3 0.0064 1.4E-07 43.1 10.4 84 84-174 64-147 (179)
442 PF03215 Rad17: Rad17 cell cyc 97.3 0.0041 8.8E-08 51.8 10.5 86 108-195 133-229 (519)
443 KOG0066 eIF2-interacting prote 97.2 0.0028 6E-08 51.1 8.8 26 31-56 611-636 (807)
444 PF13521 AAA_28: AAA domain; P 97.2 0.00021 4.5E-09 50.3 2.4 22 35-56 1-22 (163)
445 KOG2423 Nucleolar GTPase [Gene 97.2 0.00015 3.3E-09 57.1 1.8 59 29-92 303-361 (572)
446 PRK04195 replication factor C 97.2 0.0053 1.1E-07 51.0 10.8 24 33-56 39-62 (482)
447 KOG1970 Checkpoint RAD17-RFC c 97.2 0.0049 1.1E-07 50.9 10.0 88 109-198 196-286 (634)
448 cd02019 NK Nucleoside/nucleoti 97.2 0.00043 9.4E-09 41.3 3.1 21 36-56 2-22 (69)
449 cd03216 ABC_Carb_Monos_I This 97.2 0.0013 2.9E-08 46.2 6.1 27 31-57 24-50 (163)
450 PRK07003 DNA polymerase III su 97.2 0.0024 5.2E-08 55.0 8.3 116 35-151 40-161 (830)
451 PLN02200 adenylate kinase fami 97.2 0.00077 1.7E-08 50.4 4.9 35 21-55 31-65 (234)
452 PRK13833 conjugal transfer pro 97.2 0.0021 4.5E-08 50.3 7.3 25 33-57 144-168 (323)
453 cd03110 Fer4_NifH_child This p 97.1 0.0036 7.9E-08 44.6 8.1 84 82-174 92-175 (179)
454 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.1 0.0064 1.4E-07 41.9 9.0 25 33-57 26-50 (144)
455 PF00005 ABC_tran: ABC transpo 97.1 0.00039 8.3E-09 47.3 2.9 23 34-56 12-34 (137)
456 COG1116 TauB ABC-type nitrate/ 97.1 0.00041 9E-09 51.5 3.0 22 35-56 31-52 (248)
457 PRK01889 GTPase RsgA; Reviewed 97.1 0.00067 1.5E-08 53.9 4.4 24 34-57 196-219 (356)
458 PF00004 AAA: ATPase family as 97.1 0.00052 1.1E-08 46.1 3.2 21 36-56 1-21 (132)
459 smart00382 AAA ATPases associa 97.1 0.00062 1.3E-08 45.8 3.3 25 34-58 3-27 (148)
460 PRK14738 gmk guanylate kinase; 97.1 0.001 2.2E-08 48.8 4.6 26 31-56 11-36 (206)
461 PF13238 AAA_18: AAA domain; P 97.0 0.00053 1.1E-08 45.9 2.8 21 36-56 1-21 (129)
462 COG1136 SalX ABC-type antimicr 97.0 0.00057 1.2E-08 50.4 3.1 23 35-57 33-55 (226)
463 PRK06217 hypothetical protein; 97.0 0.00066 1.4E-08 48.7 3.3 23 34-56 2-24 (183)
464 PF02367 UPF0079: Uncharacteri 97.0 0.0062 1.3E-07 40.7 7.6 62 33-97 15-78 (123)
465 cd04178 Nucleostemin_like Nucl 97.0 0.0016 3.6E-08 46.3 5.2 44 108-153 1-44 (172)
466 cd00071 GMPK Guanosine monopho 97.0 0.00068 1.5E-08 46.3 3.1 21 36-56 2-22 (137)
467 PRK14530 adenylate kinase; Pro 97.0 0.00071 1.5E-08 49.9 3.3 22 34-55 4-25 (215)
468 PRK13851 type IV secretion sys 97.0 0.0049 1.1E-07 48.7 8.1 26 32-57 161-186 (344)
469 KOG3347 Predicted nucleotide k 97.0 0.0006 1.3E-08 46.6 2.6 25 31-55 5-29 (176)
470 TIGR00235 udk uridine kinase. 97.0 0.00093 2E-08 49.0 3.9 26 31-56 4-29 (207)
471 TIGR02782 TrbB_P P-type conjug 97.0 0.0037 8E-08 48.5 7.3 25 32-56 131-155 (299)
472 KOG3929 Uncharacterized conser 97.0 0.00072 1.6E-08 50.5 3.1 97 31-130 43-144 (363)
473 PF04665 Pox_A32: Poxvirus A32 97.0 0.00079 1.7E-08 50.2 3.3 27 30-56 10-36 (241)
474 TIGR00150 HI0065_YjeE ATPase, 97.0 0.0053 1.1E-07 41.6 7.1 25 33-57 22-46 (133)
475 COG0541 Ffh Signal recognition 97.0 0.00068 1.5E-08 54.2 3.1 25 30-54 97-121 (451)
476 PF07728 AAA_5: AAA domain (dy 97.0 0.00083 1.8E-08 45.8 3.1 22 35-56 1-22 (139)
477 PRK03839 putative kinase; Prov 97.0 0.00085 1.8E-08 48.0 3.3 22 35-56 2-23 (180)
478 COG1126 GlnQ ABC-type polar am 96.9 0.0011 2.3E-08 48.4 3.7 24 34-57 29-52 (240)
479 cd01130 VirB11-like_ATPase Typ 96.9 0.00089 1.9E-08 48.2 3.3 24 33-56 25-48 (186)
480 PRK10078 ribose 1,5-bisphospho 96.9 0.00087 1.9E-08 48.3 3.3 22 35-56 4-25 (186)
481 PF03205 MobB: Molybdopterin g 96.9 0.00094 2E-08 45.8 3.2 23 35-57 2-24 (140)
482 TIGR02322 phosphon_PhnN phosph 96.9 0.00086 1.9E-08 47.9 3.1 22 35-56 3-24 (179)
483 PRK14957 DNA polymerase III su 96.9 0.0071 1.5E-07 50.7 8.8 23 35-57 40-62 (546)
484 PRK05416 glmZ(sRNA)-inactivati 96.9 0.011 2.4E-07 45.5 9.3 20 35-54 8-27 (288)
485 COG1120 FepC ABC-type cobalami 96.9 0.00081 1.8E-08 50.6 3.0 23 33-55 28-50 (258)
486 cd01131 PilT Pilus retraction 96.9 0.005 1.1E-07 44.8 7.1 22 36-57 4-25 (198)
487 PRK07764 DNA polymerase III su 96.9 0.0056 1.2E-07 53.8 8.5 116 35-151 39-162 (824)
488 PRK05480 uridine/cytidine kina 96.9 0.0012 2.5E-08 48.5 3.8 25 32-56 5-29 (209)
489 TIGR01360 aden_kin_iso1 adenyl 96.9 0.00086 1.9E-08 48.1 3.0 22 34-55 4-25 (188)
490 PF07015 VirC1: VirC1 protein; 96.9 0.0078 1.7E-07 44.5 7.9 102 83-189 84-187 (231)
491 cd03246 ABCC_Protease_Secretio 96.9 0.0038 8.2E-08 44.4 6.2 25 33-57 28-52 (173)
492 PRK14737 gmk guanylate kinase; 96.9 0.0014 3E-08 47.2 3.9 23 34-56 5-27 (186)
493 PRK14532 adenylate kinase; Pro 96.9 0.00092 2E-08 48.1 3.1 21 35-55 2-22 (188)
494 TIGR03263 guanyl_kin guanylate 96.9 0.00095 2.1E-08 47.7 3.1 22 35-56 3-24 (180)
495 PRK13894 conjugal transfer ATP 96.9 0.005 1.1E-07 48.2 7.2 25 32-56 147-171 (319)
496 PRK13949 shikimate kinase; Pro 96.9 0.0012 2.5E-08 46.9 3.3 22 35-56 3-24 (169)
497 cd00820 PEPCK_HprK Phosphoenol 96.9 0.0011 2.4E-08 43.1 2.8 22 33-54 15-36 (107)
498 PRK14949 DNA polymerase III su 96.8 0.0034 7.3E-08 55.1 6.5 26 34-59 38-64 (944)
499 PRK13900 type IV secretion sys 96.8 0.0059 1.3E-07 48.1 7.4 26 32-57 159-184 (332)
500 COG0552 FtsY Signal recognitio 96.8 0.0015 3.3E-08 50.6 3.9 84 83-177 222-318 (340)
No 1
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.3e-38 Score=216.46 Aligned_cols=170 Identities=59% Similarity=1.006 Sum_probs=161.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||++||..++|||||+.||..+.+.....++++..+..+.+...+.. +.+.||||.|+++|.++.+-|+++++++
T Consensus 3 ~~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~-ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNT-IKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred cceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcE-EEEEEEEcCCcccccccccceecCCcEE
Confidence 468999999999999999999999999999889999999999999887764 9999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||+++.+||..++.|+..+++...+++-+.+|+||+|+.+.+.+..+++..++...+..++++||+++.|+.++|..
T Consensus 82 ivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~ 161 (200)
T KOG0092|consen 82 IVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQA 161 (200)
T ss_pred EEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHH
Confidence 99999999999999999999999997788888999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCC
Q 028884 191 IAKRLPRPSPS 201 (202)
Q Consensus 191 l~~~i~~~~~~ 201 (202)
|.+.+.+....
T Consensus 162 Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 162 IAEKLPCSDPQ 172 (200)
T ss_pred HHHhccCcccc
Confidence 99999887543
No 2
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.4e-38 Score=218.35 Aligned_cols=172 Identities=41% Similarity=0.739 Sum_probs=163.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
...++.+||+|+|+.|+|||+|+.||.++.+...+..+++.++..+.+.+.+.. +.+++|||.|+++|+.....|++++
T Consensus 4 ~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~-iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 4 PEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKT-IKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred cccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceE-EEEEeeeccccHHHhhhhHhhccCC
Confidence 345789999999999999999999999999999999999999999999887655 8999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe-EEEeccCCCCCHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQ 186 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~ 186 (202)
+++|+|||+++.+||..+..|+.++.++....+|.++|+||+|+.+.+.++.++++.++..++.+ ++++||+++.|+.+
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NVe~ 162 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNVED 162 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHcCCCCC
Q 028884 187 LFEEIAKRLPRPSP 200 (202)
Q Consensus 187 ~~~~l~~~i~~~~~ 200 (202)
+|..|...+++++.
T Consensus 163 ~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 163 AFLTLAKELKQRKG 176 (205)
T ss_pred HHHHHHHHHHHhcc
Confidence 99999998887653
No 3
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-37 Score=214.89 Aligned_cols=171 Identities=43% Similarity=0.748 Sum_probs=163.0
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
++.++.++|+++|+++||||+|+.+|..+.+...+..+++.++..+.+..++.. +.+++|||.|+++|+.+...|+++|
T Consensus 7 ~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~-i~lQiWDtaGQerf~ti~~sYyrgA 85 (207)
T KOG0078|consen 7 EDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKK-IKLQIWDTAGQERFRTITTAYYRGA 85 (207)
T ss_pred CCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeE-EEEEEEEcccchhHHHHHHHHHhhc
Confidence 366789999999999999999999999999999999999999999999887644 9999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
+++++|||+++..||+.+..|+..+..+...++|.++|+||+|+...+.+..+..++++.+++++++++||++|.||.++
T Consensus 86 ~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~ea 165 (207)
T KOG0078|consen 86 MGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEA 165 (207)
T ss_pred CeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCC
Q 028884 188 FEEIAKRLPRPS 199 (202)
Q Consensus 188 ~~~l~~~i~~~~ 199 (202)
|-.|++.++.+.
T Consensus 166 F~~La~~i~~k~ 177 (207)
T KOG0078|consen 166 FLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHhhc
Confidence 999999988654
No 4
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-36 Score=209.91 Aligned_cols=167 Identities=45% Similarity=0.786 Sum_probs=157.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
-+..|+++||..++||||||++|..+.+...+..+++.++..+++.+.+.. +++++|||.|+++|+++.+.|++++.++
T Consensus 20 ~k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~-vrLQlWDTAGQERFrslipsY~Rds~va 98 (221)
T KOG0094|consen 20 LKKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRT-VRLQLWDTAGQERFRSLIPSYIRDSSVA 98 (221)
T ss_pred ceEEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcE-EEEEEEecccHHHHhhhhhhhccCCeEE
Confidence 345999999999999999999999999999999999999999999887665 9999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCC-CCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSP-DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
|+|||+++..||+...+|++.+++.... ++-+++|+||.||.+.+++..++....+++++..|+++||+.|+|+..+|.
T Consensus 99 viVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFr 178 (221)
T KOG0094|consen 99 VIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFR 178 (221)
T ss_pred EEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHH
Confidence 9999999999999999999999887555 477889999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028884 190 EIAKRLPRP 198 (202)
Q Consensus 190 ~l~~~i~~~ 198 (202)
.|...+...
T Consensus 179 rIaa~l~~~ 187 (221)
T KOG0094|consen 179 RIAAALPGM 187 (221)
T ss_pred HHHHhccCc
Confidence 999888765
No 5
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=7.5e-36 Score=215.20 Aligned_cols=168 Identities=36% Similarity=0.595 Sum_probs=149.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+..+||+|+|..|+|||||+++|..+.+...+.++.+.+.....+.+. +..+.+++||++|++.|..++..+++.+|++
T Consensus 4 ~~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~-~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 4 DYLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLD-GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 467999999999999999999999988877766676666655555554 4558999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||++++.+|+.+..|+..+.... ++.|++||+||.|+...+.+..++++.+++..+++++++||++|.|++++|++
T Consensus 83 llVfD~t~~~Sf~~~~~w~~~i~~~~-~~~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~ 161 (189)
T cd04121 83 ILVYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTE 161 (189)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHH
Confidence 99999999999999999999997763 68999999999999877788889999999999999999999999999999999
Q ss_pred HHHHcCCCCC
Q 028884 191 IAKRLPRPSP 200 (202)
Q Consensus 191 l~~~i~~~~~ 200 (202)
|+..+..++.
T Consensus 162 l~~~i~~~~~ 171 (189)
T cd04121 162 LARIVLMRHG 171 (189)
T ss_pred HHHHHHHhcC
Confidence 9988775543
No 6
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=7.8e-36 Score=217.01 Aligned_cols=164 Identities=35% Similarity=0.674 Sum_probs=147.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
++|+++|..|+|||||+++|..+.+...+.++.+.++..+.+.+.+ ..+.+++||++|+++|+.++..+++++|++|+|
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~-~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlV 79 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRG-KKIRLQIWDTAGQERFNSITSAYYRSAKGIILV 79 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECC-EEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEE
Confidence 4799999999999999999999999888888888777777776654 459999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-CCeEEEeccCCCCCHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
||++++.+|+.+..|+..+......+.|+++|+||+|+.+.+++...+..+++++. ++.++++||++|.|+.++|++|+
T Consensus 80 fDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~ 159 (202)
T cd04120 80 YDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLV 159 (202)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHH
Confidence 99999999999999999888776678999999999999877788888888888875 78899999999999999999999
Q ss_pred HHcCCC
Q 028884 193 KRLPRP 198 (202)
Q Consensus 193 ~~i~~~ 198 (202)
+.+.+.
T Consensus 160 ~~~~~~ 165 (202)
T cd04120 160 DDILKK 165 (202)
T ss_pred HHHHHh
Confidence 887543
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.7e-36 Score=206.09 Aligned_cols=167 Identities=41% Similarity=0.814 Sum_probs=158.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.+|++++|+.|+|||+|+.+|....+.+.++.+.+.++..+.+.+.+.. +.+++|||.|++.+++....|++.+.+
T Consensus 3 ~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~-IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 3 YAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQ-IKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred ccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCce-EEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 3568999999999999999999999999999999999999999999887655 999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||+++.++|..+..|+..++++..++..+++++||+|+...+++..++..+|++++++.++++||+++.|+.++|.
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEaF~ 161 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEAFI 161 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHHHH
Confidence 99999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
.....|++
T Consensus 162 nta~~Iy~ 169 (216)
T KOG0098|consen 162 NTAKEIYR 169 (216)
T ss_pred HHHHHHHH
Confidence 98887764
No 8
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=199.31 Aligned_cols=170 Identities=42% Similarity=0.758 Sum_probs=158.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
+.....+||+++|..|+|||||+.+|..+.+++....+++.++..+.+.+.+.. +.+.+|||.|+++|+.+.+.|++++
T Consensus 6 s~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~-~KlaiWDTAGqErFRtLTpSyyRga 84 (209)
T KOG0080|consen 6 SGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKR-LKLAIWDTAGQERFRTLTPSYYRGA 84 (209)
T ss_pred cCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCce-EEEEEEeccchHhhhccCHhHhccC
Confidence 344567999999999999999999999999999999899999999999887655 9999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
.++|+|||.+.+++|..+..|++.+..+ .++++-.++|+||+|...++.+..++...+++++.+.++++||++.+|++.
T Consensus 85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~~ 164 (209)
T KOG0080|consen 85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQC 164 (209)
T ss_pred ceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHHH
Confidence 9999999999999999999999999877 567888899999999887899999999999999999999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028884 187 LFEEIAKRLPRP 198 (202)
Q Consensus 187 ~~~~l~~~i~~~ 198 (202)
+|+.|+++|.+.
T Consensus 165 ~FeelveKIi~t 176 (209)
T KOG0080|consen 165 CFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHhcC
Confidence 999999998764
No 9
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=2.3e-34 Score=204.15 Aligned_cols=164 Identities=40% Similarity=0.756 Sum_probs=145.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+++|++|+|||||+++|..+.+...+.++.+.+.....+... +..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVN-GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4799999999999999999999998877777676666655555554 445899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
|||++++.+|+.+..|+..+.....++.|+++|+||+|+.+...+..+++..+++..+++++++||++|.|+.++|..++
T Consensus 81 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~ 160 (166)
T cd04122 81 VYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETA 160 (166)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988877667899999999999988777788889999999999999999999999999999999
Q ss_pred HHcCC
Q 028884 193 KRLPR 197 (202)
Q Consensus 193 ~~i~~ 197 (202)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd04122 161 KKIYQ 165 (166)
T ss_pred HHHhh
Confidence 88754
No 10
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=4.1e-34 Score=204.04 Aligned_cols=162 Identities=36% Similarity=0.674 Sum_probs=142.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+++|||||+.+|..+.+...+.++.+..+ ...+.. ++..+.+.+|||+|+++|+.++..+++++|++|+|
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~-~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSV-DGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEE-CCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 6899999999999999999999999887888876555 344454 45569999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCC----------CCChHHHHHHHHHcCC-eEEEeccCCC
Q 028884 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKR----------EVPAQDGIEYAEKNGM-FFIETSAKTA 181 (202)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~----------~~~~~~~~~~~~~~~~-~~~~~s~~~~ 181 (202)
||++++.||+.+ ..|+..+.... ++.|++||+||+|+.+.. .+..+++..+++..++ .+++|||++|
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~-~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~ 158 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYA-PNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQ 158 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcc
Confidence 999999999998 78999987764 579999999999986542 4778889999999987 5999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q 028884 182 DNINQLFEEIAKRLPRP 198 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~ 198 (202)
.|++++|+.+++.+.++
T Consensus 159 ~nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 159 QNVKAVFDAAIKVVLQP 175 (176)
T ss_pred cCHHHHHHHHHHHHhcC
Confidence 99999999999987655
No 11
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=7.9e-34 Score=201.63 Aligned_cols=165 Identities=44% Similarity=0.786 Sum_probs=146.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..+||+++|++|+|||||+++|.++.+...+.++.+.+.....+...+ ..+.+.+||++|++.+..++..+++.+|++|
T Consensus 2 ~~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~-~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i 80 (167)
T cd01867 2 YLFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDG-KKIKLQIWDTAGQERFRTITTAYYRGAMGII 80 (167)
T ss_pred cceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECC-EEEEEEEEeCCchHHHHHHHHHHhCCCCEEE
Confidence 568999999999999999999999998888787777766555555544 4489999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
+|||++++.+|..+..|+..+......+.|+++|+||.|+.+......++...++...+++++++||+++.|++++|+++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i 160 (167)
T cd01867 81 LVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTL 160 (167)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHH
Confidence 99999999999999999999987766789999999999998766677778888888899999999999999999999999
Q ss_pred HHHcCC
Q 028884 192 AKRLPR 197 (202)
Q Consensus 192 ~~~i~~ 197 (202)
++++..
T Consensus 161 ~~~~~~ 166 (167)
T cd01867 161 AKDIKK 166 (167)
T ss_pred HHHHHh
Confidence 998754
No 12
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=9.3e-34 Score=203.35 Aligned_cols=163 Identities=28% Similarity=0.554 Sum_probs=142.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+..+||+++|..|+|||||+++|..+.+...+.++....+. ..+.+ ++..+.+.+|||+|++.|..++..+++.+|++
T Consensus 3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~-~~~~~-~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ 80 (182)
T cd04172 3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT-ASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 80 (182)
T ss_pred cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeE-EEEEE-CCEEEEEEEEECCCchhhHhhhhhhcCCCCEE
Confidence 45789999999999999999999999988877777765553 44444 44558999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCCCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
|+|||++++.||+.+ ..|+..+.... ++.|++||+||+|+.+ ...+..+++.++++..++ +|++|
T Consensus 81 ilvyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~ 159 (182)
T cd04172 81 LICFDISRPETLDSVLKKWKGEIQEFC-PNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 159 (182)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHC-CCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEEC
Confidence 999999999999997 89999998764 6799999999999854 245888999999999996 89999
Q ss_pred ccCCCCC-HHHHHHHHHHHcC
Q 028884 177 SAKTADN-INQLFEEIAKRLP 196 (202)
Q Consensus 177 s~~~~~~-i~~~~~~l~~~i~ 196 (202)
||++|.| ++++|+.++..+.
T Consensus 160 SAk~~~n~v~~~F~~~~~~~~ 180 (182)
T cd04172 160 SALQSENSVRDIFHVATLACV 180 (182)
T ss_pred CcCCCCCCHHHHHHHHHHHHh
Confidence 9999998 9999999988643
No 13
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1.2e-33 Score=202.98 Aligned_cols=166 Identities=32% Similarity=0.622 Sum_probs=146.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecC---------CcEEEEEEEeCCChhhhhhcccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD---------STTVKFEIWDTAGQERYAALAPL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~D~~G~~~~~~~~~~ 102 (202)
+.+||+++|++|||||||+++|..+.+...+.++.+.+.....+.+.. +..+.+.+||++|++.+..++..
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTA 82 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHH
Confidence 579999999999999999999999998888888877766655555432 34588999999999999999999
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
+++.+|++|+|||++++.++..+..|+..+... ..++.|+++|+||+|+.+...+..++...++...+++++++||++|
T Consensus 83 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~ 162 (180)
T cd04127 83 FFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATG 162 (180)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 999999999999999999999999999988765 3457899999999999877777788889999999999999999999
Q ss_pred CCHHHHHHHHHHHcCC
Q 028884 182 DNINQLFEEIAKRLPR 197 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~ 197 (202)
.|++++|++|++.+.+
T Consensus 163 ~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 163 TNVEKAVERLLDLVMK 178 (180)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987654
No 14
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=3e-34 Score=196.80 Aligned_cols=169 Identities=37% Similarity=0.700 Sum_probs=153.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
+...+||+++|++|+|||||+++|...++...+..+++.++..+.+.+. +..+.+++|||.|+++|+++...+++++|.
T Consensus 6 K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd-~~~vtlQiWDTAGQERFqsLg~aFYRgaDc 84 (210)
T KOG0394|consen 6 KRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD-DRSVTLQIWDTAGQERFQSLGVAFYRGADC 84 (210)
T ss_pred cccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc-CeEEEEEEEecccHHHhhhcccceecCCce
Confidence 3557999999999999999999999999999999999999999999887 555999999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCC--CCCChHHHHHHHHHc-CCeEEEeccCCCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEK--REVPAQDGIEYAEKN-GMFFIETSAKTAD 182 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 182 (202)
.+++||.+++.||+.+..|.+.+..+.. ...|+||++||+|+... +.++...++.||+.. .++|+++|||+..
T Consensus 85 Cvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~~ 164 (210)
T KOG0394|consen 85 CVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEAT 164 (210)
T ss_pred EEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEecccccc
Confidence 9999999999999999999999877644 35789999999998653 788999999999986 6889999999999
Q ss_pred CHHHHHHHHHHHcCCCC
Q 028884 183 NINQLFEEIAKRLPRPS 199 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~~~ 199 (202)
|+.++|..+...++...
T Consensus 165 NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 165 NVDEAFEEIARRALANE 181 (210)
T ss_pred cHHHHHHHHHHHHHhcc
Confidence 99999999998876653
No 15
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=8.8e-34 Score=202.21 Aligned_cols=164 Identities=30% Similarity=0.516 Sum_probs=142.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.++|+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+.. ++..+.+.+||++|.+.+..++..+++.+|++|+
T Consensus 2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~il 79 (172)
T cd04141 2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARI-DNEPALLDILDTAGQAEFTAMRDQYMRCGEGFII 79 (172)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEE-CCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEE
Confidence 47999999999999999999999998777777766444 333444 4455889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||++++.+|..+..|+..+... ..+++|+++|+||+|+.+...+..++...+++..+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l 159 (172)
T cd04141 80 CYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGL 159 (172)
T ss_pred EEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHH
Confidence 99999999999999898888765 34689999999999997777788888999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028884 192 AKRLPRP 198 (202)
Q Consensus 192 ~~~i~~~ 198 (202)
+..+.+.
T Consensus 160 ~~~~~~~ 166 (172)
T cd04141 160 VREIRRK 166 (172)
T ss_pred HHHHHHh
Confidence 9887643
No 16
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-33 Score=206.04 Aligned_cols=165 Identities=33% Similarity=0.631 Sum_probs=145.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+.++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv 80 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIV 80 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEE
Confidence 58999999999999999999999888878888777776666666645668999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC-CeEEEeccCCCCCHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLF 188 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~ 188 (202)
||++++.+|+.+..|+..+... ...++|++||+||+|+.+......++...+++..+ ..++++||++|.|+.++|
T Consensus 81 ~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f 160 (201)
T cd04107 81 FDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAM 160 (201)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHH
Confidence 9999999999999999887653 13678999999999997666777888999999988 689999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
++|++.+.+.
T Consensus 161 ~~l~~~l~~~ 170 (201)
T cd04107 161 RFLVKNILAN 170 (201)
T ss_pred HHHHHHHHHh
Confidence 9999987654
No 17
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=2.6e-33 Score=197.82 Aligned_cols=161 Identities=39% Similarity=0.698 Sum_probs=143.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
++|+++|++|+|||||+++|..+.+.+.+.++.+.+.....+...+ ..+.+.+||++|.+.+..++..+++.+|++++|
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDG-IKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECC-EEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 4899999999999999999999998877777777766666666543 458899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||++++.+|+.+..|+..+......+.|+++|+||.|+.+...+..++...+++..+++++++||++|.|++++|++|++
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 159 (161)
T cd04117 80 YDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTE 159 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHh
Confidence 99999999999999999988775567999999999999877777888899999989999999999999999999999987
Q ss_pred Hc
Q 028884 194 RL 195 (202)
Q Consensus 194 ~i 195 (202)
.+
T Consensus 160 ~~ 161 (161)
T cd04117 160 LV 161 (161)
T ss_pred hC
Confidence 53
No 18
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=2.8e-33 Score=198.46 Aligned_cols=162 Identities=37% Similarity=0.658 Sum_probs=142.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.. ++..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFR-NDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 79999999999999999999999887777777666555555544 34558999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||.+++.+++.+..|+..+......+.|+++|+||+|+.+......++..+++...+++++++||+++.|+.++|++|+.
T Consensus 81 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 160 (165)
T cd01865 81 YDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVD 160 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998776668999999999999877767777888888888899999999999999999999998
Q ss_pred HcC
Q 028884 194 RLP 196 (202)
Q Consensus 194 ~i~ 196 (202)
.+.
T Consensus 161 ~~~ 163 (165)
T cd01865 161 IIC 163 (165)
T ss_pred HHH
Confidence 764
No 19
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=2.3e-33 Score=199.01 Aligned_cols=164 Identities=43% Similarity=0.781 Sum_probs=145.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+|+|++|+|||||+++|.++.+...+.++.+.++....+... +..+.+.+||+||++.+..++..+++.+|++|+
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-GKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 4799999999999999999999988877777777766666666554 444889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
|||+++++++..+..|+..+.....++.|+++|+||.|+.+...+..++...++...+++++++|+++|.|++++|++|+
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~ 160 (166)
T cd01869 81 VYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMA 160 (166)
T ss_pred EEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHH
Confidence 99999999999999999999877657899999999999877777777888899999999999999999999999999999
Q ss_pred HHcCC
Q 028884 193 KRLPR 197 (202)
Q Consensus 193 ~~i~~ 197 (202)
+.+.+
T Consensus 161 ~~~~~ 165 (166)
T cd01869 161 REIKK 165 (166)
T ss_pred HHHHh
Confidence 98753
No 20
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3e-33 Score=206.78 Aligned_cols=165 Identities=25% Similarity=0.489 Sum_probs=143.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||+++|+.|||||||+++|..+.+...+.++....+. ..+.. ++..+.+.+|||+|++.|..++..+++++|++
T Consensus 11 ~~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~-~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~v 88 (232)
T cd04174 11 VMRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDSDAV 88 (232)
T ss_pred eeeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEE-CCEEEEEEEEeCCCchhhHHHHHHHcCCCcEE
Confidence 35789999999999999999999999988888888766653 34444 44559999999999999999999999999999
Q ss_pred EEEEeCCChhHHHH-HHHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCCCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
|+|||++++.+|.. +..|+..+.... ++.|+++|+||+|+.+ ...+..+++.++++..++ .|++|
T Consensus 89 IlVyDit~~~Sf~~~~~~w~~~i~~~~-~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~Et 167 (232)
T cd04174 89 LLCFDISRPETVDSALKKWKAEIMDYC-PSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLEC 167 (232)
T ss_pred EEEEECCChHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEc
Confidence 99999999999998 489999998764 5789999999999854 256788899999999998 69999
Q ss_pred ccCCCC-CHHHHHHHHHHHcCCC
Q 028884 177 SAKTAD-NINQLFEEIAKRLPRP 198 (202)
Q Consensus 177 s~~~~~-~i~~~~~~l~~~i~~~ 198 (202)
||++|. |++++|..++..+.++
T Consensus 168 SAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 168 SAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred cCCcCCcCHHHHHHHHHHHHHHh
Confidence 999997 8999999998877554
No 21
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.5e-33 Score=199.90 Aligned_cols=160 Identities=25% Similarity=0.524 Sum_probs=139.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|++|+|||||+++|..+.+...+.++....+. ..+.+. +..+.+.+|||+|++.|..+...+++.+|++|+|
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~~-~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYT-ASFEID-EQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEE-EEEEEC-CEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 68999999999999999999999988777777765553 445554 4558999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCCCChHHHHHHHHHcCC-eEEEeccC
Q 028884 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 179 (202)
||++++.||+.+ ..|+..++... ++.|+++|+||+|+.+ ...+..+++.++++..++ +++++||+
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~-~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~ 158 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFC-PNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAF 158 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHC-CCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccC
Confidence 999999999996 89999998774 6899999999999854 235788899999999997 79999999
Q ss_pred CCCC-HHHHHHHHHHHcC
Q 028884 180 TADN-INQLFEEIAKRLP 196 (202)
Q Consensus 180 ~~~~-i~~~~~~l~~~i~ 196 (202)
+|.| ++++|..++....
T Consensus 159 ~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 159 TSEKSVRDIFHVATMACL 176 (178)
T ss_pred cCCcCHHHHHHHHHHHHh
Confidence 9995 9999999998644
No 22
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.5e-33 Score=204.84 Aligned_cols=165 Identities=34% Similarity=0.563 Sum_probs=147.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|.++.+...+.++.+.++....+.+.++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV 80 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLV 80 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999888888888888877777777666668999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
||++++++|+.+..|+..+.... ..+.|+++|+||+|+.+.+.+..++...+++..+++++++||++|.|++++|++
T Consensus 81 ~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~ 160 (215)
T cd04109 81 YDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQ 160 (215)
T ss_pred EECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHH
Confidence 99999999999999999987653 235689999999999877777888888999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
|+..+...
T Consensus 161 l~~~l~~~ 168 (215)
T cd04109 161 LAAELLGV 168 (215)
T ss_pred HHHHHHhc
Confidence 99988654
No 23
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=6.2e-33 Score=196.80 Aligned_cols=162 Identities=30% Similarity=0.642 Sum_probs=143.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+...+ ..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRN-KEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECC-eEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 5899999999999999999999998887788877777666666654 458999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCC-----CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGS-----PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~-----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
||.+++.++..+..|+..+..... .+.|+++|+||+|+.++.....++...++...+++++++||+++.|+.++|
T Consensus 80 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 159 (168)
T cd04119 80 YDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159 (168)
T ss_pred EECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999877643 579999999999987666677788888888888999999999999999999
Q ss_pred HHHHHHcC
Q 028884 189 EEIAKRLP 196 (202)
Q Consensus 189 ~~l~~~i~ 196 (202)
++|++.+.
T Consensus 160 ~~l~~~l~ 167 (168)
T cd04119 160 QTLFSSIV 167 (168)
T ss_pred HHHHHHHh
Confidence 99998875
No 24
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-34 Score=187.79 Aligned_cols=167 Identities=35% Similarity=0.645 Sum_probs=155.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+.-+|++|+|...+|||||+.++.+..+...+..+.+.++..+++. .....+.+++|||.|+++|+.+...++++++++
T Consensus 19 DymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvy-r~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVY-RSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred cceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEee-ecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 4567999999999999999999999999999999999998887654 455669999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||+++.+||..++.|.-.+...+..++|+|+|+||||+..++.+..+..+.++.+++..++++|++.+.|+..+|+.
T Consensus 98 iLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~NinVk~~Fe~ 177 (193)
T KOG0093|consen 98 ILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENINVKQVFER 177 (193)
T ss_pred EEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhcccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
++..|-+.
T Consensus 178 lv~~Ic~k 185 (193)
T KOG0093|consen 178 LVDIICDK 185 (193)
T ss_pred HHHHHHHH
Confidence 99887554
No 25
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=9e-33 Score=195.75 Aligned_cols=163 Identities=47% Similarity=0.830 Sum_probs=144.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..++|+|+|.+++|||||+++|.++.+...+.++.+.++....+...+ ..+.+.+||+||.+++..++..+++.++++|
T Consensus 2 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 2 YLFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDG-KTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECC-EEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 458999999999999999999999988777778887777666666554 4478999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
+|||++++.++..+.+|+..+......+.|+++|+||.|+...+....++...++...+++++++||++|.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 160 (165)
T cd01868 81 LVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQL 160 (165)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHH
Confidence 99999999999999999999888765679999999999998777777778888888889999999999999999999999
Q ss_pred HHHc
Q 028884 192 AKRL 195 (202)
Q Consensus 192 ~~~i 195 (202)
++.+
T Consensus 161 ~~~i 164 (165)
T cd01868 161 LTEI 164 (165)
T ss_pred HHHh
Confidence 9876
No 26
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=5.7e-33 Score=201.20 Aligned_cols=164 Identities=31% Similarity=0.595 Sum_probs=140.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+++|..++|||||+.+|..+.+...+.++.+..+. ..+.+ ++..+.+.+|||+|++.|+.++..+++.+|++|+
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYS-AQTAV-DGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeE-EEEEE-CCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 489999999999999999999999987777777765443 33444 4555999999999999999999999999999999
Q ss_pred EEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------CCChHHHHHHHHHcC-CeEEEecc
Q 028884 113 VYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNG-MFFIETSA 178 (202)
Q Consensus 113 v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~ 178 (202)
|||++++.+|+.+. .|+..+... .++.|++||+||.|+.+.. .+..+++..+++..+ ++++++||
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~-~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA 159 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHH-CPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCC
Confidence 99999999999996 688877765 3579999999999986432 356678888998888 58999999
Q ss_pred CCCCCHHHHHHHHHHHcCCCC
Q 028884 179 KTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 179 ~~~~~i~~~~~~l~~~i~~~~ 199 (202)
++|.|++++|++|++.+..+.
T Consensus 160 k~g~~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 160 LNQDGVKEVFAEAVRAVLNPT 180 (191)
T ss_pred CCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999887753
No 27
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-32 Score=195.21 Aligned_cols=163 Identities=43% Similarity=0.770 Sum_probs=142.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.+||+|+|++|+|||||+++|..+.+...+.++.+.+.....+.+. +..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-GKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 56899999999999999999999988877777777666655666554 34478999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEE 190 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~~~ 190 (202)
+|||++++.++..+..|+..+......+.|+++|+||+|+.+.......++..+++..++ .++++|+++|.|++++|+.
T Consensus 81 lv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~ 160 (165)
T cd01864 81 IAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLL 160 (165)
T ss_pred EEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHH
Confidence 999999999999999999999876667899999999999987777777888888888775 6899999999999999999
Q ss_pred HHHHc
Q 028884 191 IAKRL 195 (202)
Q Consensus 191 l~~~i 195 (202)
|.+.+
T Consensus 161 l~~~l 165 (165)
T cd01864 161 MATEL 165 (165)
T ss_pred HHHhC
Confidence 98753
No 28
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=8e-33 Score=203.17 Aligned_cols=166 Identities=37% Similarity=0.694 Sum_probs=147.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+.++..+.+.+||++|++.+..++..+++.+|++|+
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iil 81 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLL 81 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEE
Confidence 58999999999999999999999988777777877777777777666666899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||++++.+|..+.+|+..+.... ....|++||+||.|+.+...+..++...+++.++++++++|++++.|++++|++|
T Consensus 82 v~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l 161 (211)
T cd04111 82 VFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELL 161 (211)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHH
Confidence 999999999999999999887653 3457789999999998777778888889999999999999999999999999999
Q ss_pred HHHcCCC
Q 028884 192 AKRLPRP 198 (202)
Q Consensus 192 ~~~i~~~ 198 (202)
++.+.+.
T Consensus 162 ~~~~~~~ 168 (211)
T cd04111 162 TQEIYER 168 (211)
T ss_pred HHHHHHH
Confidence 9877543
No 29
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=1.3e-32 Score=194.19 Aligned_cols=161 Identities=43% Similarity=0.786 Sum_probs=143.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|++|+|||||+++|.++.+.....++.+.++....+.+.+ ..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGG-KRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECC-EEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 5899999999999999999999988777777777766666666553 448899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||++++.++..+..|+..++....++.|+++|+||.|+.+......++...+++..++.++++|++++.|+.++|+++++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 80 YDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCAR 159 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999888777789999999999999877777788888899999999999999999999999999987
Q ss_pred Hc
Q 028884 194 RL 195 (202)
Q Consensus 194 ~i 195 (202)
.+
T Consensus 160 ~~ 161 (161)
T cd04113 160 SI 161 (161)
T ss_pred hC
Confidence 64
No 30
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=1.7e-32 Score=195.02 Aligned_cols=166 Identities=40% Similarity=0.799 Sum_probs=146.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+..+||+|+|.+|+|||||++++.++.+...+.++.+.+.....+... +..+.+.+||++|.+++..+...+++.+|++
T Consensus 2 ~~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 2 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-GKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 346899999999999999999999988877777777776666666554 4447999999999999999889999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|||++++.++..+..|+..++....++.|+++|+||.|+.+......++...++...++.++++|++++.|+.++|.+
T Consensus 81 l~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~ 160 (168)
T cd01866 81 LLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFIN 160 (168)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999998876678999999999999866667778888888889999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
+.+.+.+
T Consensus 161 ~~~~~~~ 167 (168)
T cd01866 161 TAKEIYE 167 (168)
T ss_pred HHHHHHh
Confidence 9988754
No 31
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.2e-33 Score=190.17 Aligned_cols=165 Identities=39% Similarity=0.712 Sum_probs=154.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
++++++|+|+.-+|||+|++.|..+++....+|+.+.++....+.+..+..+.+++|||.|+++|++....|++++-+++
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgvl 86 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGVL 86 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccceE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCe-EEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|||+++..||+.+..|++..... ..|+.+ +.+|++|+|+...+++..++++.+++.++..++++|+++|.|++++|+
T Consensus 87 lvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVeEAF~ 166 (213)
T KOG0091|consen 87 LVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVEEAFD 166 (213)
T ss_pred EEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHHHHHH
Confidence 999999999999999999987766 336655 577899999999999999999999999999999999999999999999
Q ss_pred HHHHHcC
Q 028884 190 EIAKRLP 196 (202)
Q Consensus 190 ~l~~~i~ 196 (202)
.|.+.+.
T Consensus 167 mlaqeIf 173 (213)
T KOG0091|consen 167 MLAQEIF 173 (213)
T ss_pred HHHHHHH
Confidence 9887664
No 32
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=1e-32 Score=194.89 Aligned_cols=161 Identities=36% Similarity=0.749 Sum_probs=148.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
||+|+|++++|||||+++|.++.+...+.++.+.+.....+... +..+.+.+||++|++.+..+...+++.+|++|+||
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-GKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 79999999999999999999999988888888778777777766 55589999999999999988889999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 194 (202)
|.+++.|+..+..|+..+......+.|++|++||.|+.+.+.+..+++..+++.++.+|+++|++++.|+.++|..+++.
T Consensus 80 d~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~ 159 (162)
T PF00071_consen 80 DVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRK 159 (162)
T ss_dssp ETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 99999999999999999998866679999999999998878889999999999999999999999999999999999987
Q ss_pred cC
Q 028884 195 LP 196 (202)
Q Consensus 195 i~ 196 (202)
+.
T Consensus 160 i~ 161 (162)
T PF00071_consen 160 IL 161 (162)
T ss_dssp HH
T ss_pred Hh
Confidence 64
No 33
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.4e-33 Score=194.93 Aligned_cols=172 Identities=47% Similarity=0.806 Sum_probs=161.4
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 105 (202)
.+...++.+||+++|++++|||-|+.+|..+.+......+++.++....+.+.+ ..+..+||||.|+++|++....|++
T Consensus 7 ~~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQERyrAitSaYYr 85 (222)
T KOG0087|consen 7 KSEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQERYRAITSAYYR 85 (222)
T ss_pred CccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhhhccccchhhc
Confidence 345668899999999999999999999999999999999999999998888765 4499999999999999999999999
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHH
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 185 (202)
++.++++|||++...+|+.+..||..++.+..+++++++|+||+||...+.+..+++..++...+..++++||.++.|+.
T Consensus 86 gAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 86 GAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred ccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 99999999999999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCC
Q 028884 186 QLFEEIAKRLPRP 198 (202)
Q Consensus 186 ~~~~~l~~~i~~~ 198 (202)
.+|..++..|++.
T Consensus 166 ~aF~~~l~~I~~~ 178 (222)
T KOG0087|consen 166 KAFERVLTEIYKI 178 (222)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887653
No 34
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.4e-32 Score=198.74 Aligned_cols=164 Identities=34% Similarity=0.657 Sum_probs=144.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+.+. .+.+.+||++|.+.+..++..+++.+|++|+|
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENK-IIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCE-EEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 58999999999999999999999887767777777666666665443 58899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||++++.++..+..|+..+........|+++|+||.|+.+...+...+...++...+++++++||+++.|++++|++|++
T Consensus 80 ~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~ 159 (188)
T cd04125 80 YDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVK 159 (188)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999998776667899999999999877777778888888888899999999999999999999998
Q ss_pred HcCCC
Q 028884 194 RLPRP 198 (202)
Q Consensus 194 ~i~~~ 198 (202)
.+.++
T Consensus 160 ~~~~~ 164 (188)
T cd04125 160 LIIKR 164 (188)
T ss_pred HHHHH
Confidence 87654
No 35
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1.5e-32 Score=197.37 Aligned_cols=163 Identities=27% Similarity=0.525 Sum_probs=138.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|..|+|||||+++|..+.+...+.++.+.++..+.+.+.+ ..+.+.+||++|++.|..++..+++.+|++++|
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~-~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRG-TEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC-EEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 5899999999999999999999998887888887777666666654 458999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-----CCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-----REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
||++++.++..+..|+..+........| ++|+||+|+... ......+...+++..+++++++||++|.|++++|
T Consensus 80 ~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf 158 (182)
T cd04128 80 FDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIF 158 (182)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999998776444566 678999998531 1123456677888888999999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
+++++.+.+-
T Consensus 159 ~~l~~~l~~~ 168 (182)
T cd04128 159 KIVLAKAFDL 168 (182)
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 36
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.6e-32 Score=202.30 Aligned_cols=167 Identities=46% Similarity=0.773 Sum_probs=149.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.+||+++|++|+|||||+++|.++.+...+.++.+.+.....+.+.+ ..+.+.+||++|++++..++..+++.+++
T Consensus 9 ~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~-~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~ 87 (216)
T PLN03110 9 YDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEG-KTVKAQIWDTAGQERYRAITSAYYRGAVG 87 (216)
T ss_pred cCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC-EEEEEEEEECCCcHHHHHHHHHHhCCCCE
Confidence 34679999999999999999999999888777777777777677776654 45899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.+|+.+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|+
T Consensus 88 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~ 167 (216)
T PLN03110 88 ALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQ 167 (216)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987777778888889888999999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
+|++.+.+
T Consensus 168 ~l~~~i~~ 175 (216)
T PLN03110 168 TILLEIYH 175 (216)
T ss_pred HHHHHHHH
Confidence 99988755
No 37
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=2.1e-32 Score=199.51 Aligned_cols=167 Identities=38% Similarity=0.691 Sum_probs=145.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+..++|+|+|++|+|||||+++|.++.+...+.++.+.++....+... +..+.+.+||+||++.+..++..+++.+|++
T Consensus 4 ~~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~i 82 (199)
T cd04110 4 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GERVKLQIWDTAGQERFRTITSTYYRGTHGV 82 (199)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEEC-CEEEEEEEEeCCCchhHHHHHHHHhCCCcEE
Confidence 357999999999999999999999988877777777766665666554 3447899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|||++++++|+.+..|+..+... ....|++||+||+|+.+.......+...++...+++++++|+++|.|+.++|++
T Consensus 83 ilv~D~~~~~s~~~~~~~~~~i~~~-~~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~ 161 (199)
T cd04110 83 IVVYDVTNGESFVNVKRWLQEIEQN-CDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNC 161 (199)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHH
Confidence 9999999999999999999998776 357899999999999877667778888888888999999999999999999999
Q ss_pred HHHHcCCCC
Q 028884 191 IAKRLPRPS 199 (202)
Q Consensus 191 l~~~i~~~~ 199 (202)
|...+.+.+
T Consensus 162 l~~~~~~~~ 170 (199)
T cd04110 162 ITELVLRAK 170 (199)
T ss_pred HHHHHHHhh
Confidence 999887654
No 38
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=1.4e-32 Score=194.18 Aligned_cols=160 Identities=35% Similarity=0.573 Sum_probs=136.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||++++..+.+...+.++... .....+... +..+.+.+||++|.+++..++..+++.+|++++|
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED-SYRKQIEVD-GQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLV 79 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhh-hEEEEEEEC-CEEEEEEEEECCCccccchHHHHHhhcCCEEEEE
Confidence 79999999999999999999998877666666543 223444443 4458899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
||++++.+++.+..|+..+... ...+.|+++|+||+|+.+......++...+++..+.+++++||+++.|+.++|++|+
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd04136 80 YSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLV 159 (163)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHH
Confidence 9999999999999999888765 346799999999999876666666777778888889999999999999999999998
Q ss_pred HHc
Q 028884 193 KRL 195 (202)
Q Consensus 193 ~~i 195 (202)
+.+
T Consensus 160 ~~~ 162 (163)
T cd04136 160 RQI 162 (163)
T ss_pred Hhc
Confidence 865
No 39
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=4.6e-32 Score=191.45 Aligned_cols=160 Identities=34% Similarity=0.639 Sum_probs=141.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEec-CCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
+||+++|.+++|||||+++|.++.+...+.++.+.++....+.+. .+..+.+++||+||++.+..++..+++.+|++++
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~ 80 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACIL 80 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEE
Confidence 589999999999999999999988877777777777766666654 1445899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
|||+++++++..+..|+..+... ..+.|+++|+||.|+..+..+..++...+++..+++++++|++++.|++++|++|.
T Consensus 81 v~d~~~~~s~~~l~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (162)
T cd04106 81 VFSTTDRESFEAIESWKEKVEAE-CGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLA 159 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999988765 35799999999999987777777888889999999999999999999999999998
Q ss_pred HH
Q 028884 193 KR 194 (202)
Q Consensus 193 ~~ 194 (202)
..
T Consensus 160 ~~ 161 (162)
T cd04106 160 EK 161 (162)
T ss_pred Hh
Confidence 64
No 40
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.2e-32 Score=191.95 Aligned_cols=164 Identities=45% Similarity=0.835 Sum_probs=143.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|++|+|||||+++|.+..+.....++.+.+.....+... +..+.+.+||+||++.+...+..+++.+|++|+|
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVD-GKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999999999999988877777777776666666554 4447899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||++++.+++.+..|+..+.....+++|+++|+||+|+........+....++...+++++++|++++.|++++|++|.+
T Consensus 80 ~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~ 159 (164)
T smart00175 80 YDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAR 159 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776678999999999998776666777788888888999999999999999999999999
Q ss_pred HcCCC
Q 028884 194 RLPRP 198 (202)
Q Consensus 194 ~i~~~ 198 (202)
.+.++
T Consensus 160 ~~~~~ 164 (164)
T smart00175 160 EILKR 164 (164)
T ss_pred HHhhC
Confidence 88653
No 41
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.9e-33 Score=185.03 Aligned_cols=169 Identities=41% Similarity=0.729 Sum_probs=157.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 106 (202)
++..++.+|++++|+.|+|||.|+++|...++.....-+++.++..+.+.... +.+.++||||.|+++|++..+.|+++
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQErFRSVtRsYYRG 81 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQERFRSVTRSYYRG 81 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccHHHHHHHHHHHhcc
Confidence 45667899999999999999999999999999888888899988888777654 55999999999999999999999999
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
+.++++|||++++++|..+..|+..++....+++.+++++||.|+.+.+++...++..++++..+.+.++|+++|+|+.+
T Consensus 82 AAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVEE 161 (214)
T KOG0086|consen 82 AAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEE 161 (214)
T ss_pred ccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHHH
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC
Q 028884 187 LFEEIAKRLP 196 (202)
Q Consensus 187 ~~~~l~~~i~ 196 (202)
+|-..+..|.
T Consensus 162 aFl~c~~tIl 171 (214)
T KOG0086|consen 162 AFLKCARTIL 171 (214)
T ss_pred HHHHHHHHHH
Confidence 9988777664
No 42
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=5.3e-32 Score=199.83 Aligned_cols=164 Identities=29% Similarity=0.532 Sum_probs=141.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||+++|.+|||||||+++|..+.+...+.++.+.+.....+...+ ..+.+.+||++|.+.+..++..+++.+|++
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 89 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNC-GKIRFYCWDTAGQEKFGGLRDGYYIHGQCA 89 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECC-eEEEEEEEECCCchhhhhhhHHHcccccEE
Confidence 5679999999999999999999999988888888887777666655544 348999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||++++.++..+..|+..+.... ++.|+++|+||+|+... .+...+. .+++..+++++++||++|.|+.++|++
T Consensus 90 ilvfD~~~~~s~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~ 166 (219)
T PLN03071 90 IIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNR-QVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLY 166 (219)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhC-CCCcEEEEEEchhhhhc-cCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHH
Confidence 99999999999999999999998763 57999999999998543 3333444 677778899999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
|++.+.+.
T Consensus 167 l~~~~~~~ 174 (219)
T PLN03071 167 LARKLAGD 174 (219)
T ss_pred HHHHHHcC
Confidence 99988654
No 43
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=4.7e-32 Score=193.80 Aligned_cols=159 Identities=30% Similarity=0.572 Sum_probs=135.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|..+.+...+.++.+..+. ..+.. ++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMI-GGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVC 79 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEE-CCEEEEEEEEECCCccchhhhhhhhcccCCEEEEE
Confidence 79999999999999999999999887777777765553 23444 35558999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcC-CeEEEeccC
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~s~~ 179 (202)
||.+++.+|+.+. .|+..+... .++.|++||+||+|+.+. +.+..+++.++++..+ +.++++||+
T Consensus 80 ~d~~~~~s~~~~~~~w~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~ 158 (175)
T cd01874 80 FSVVSPSSFENVKEKWVPEITHH-CPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSAL 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCC
Confidence 9999999999996 598888765 357999999999998543 4566777888888876 689999999
Q ss_pred CCCCHHHHHHHHHHHc
Q 028884 180 TADNINQLFEEIAKRL 195 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i 195 (202)
+|.|+.++|+.++...
T Consensus 159 tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 159 TQKGLKNVFDEAILAA 174 (175)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998754
No 44
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=3.3e-32 Score=192.68 Aligned_cols=162 Identities=35% Similarity=0.592 Sum_probs=138.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
++||+++|.+|+|||||++++..+.+...+.++....+ ...+... +..+.+.+||++|++.+..++..+++.+|++++
T Consensus 1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 78 (164)
T cd04175 1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVL 78 (164)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-CEEEEEEEEECCCcccchhHHHHHHhhCCEEEE
Confidence 37999999999999999999998887666666655443 3344443 445889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||.++..+++.+.+|+..+... ...+.|+++|+||+|+.........+...+++..+++++++||+++.|++++|.+|
T Consensus 79 v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l 158 (164)
T cd04175 79 VYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDL 158 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999888764 34689999999999998766666677778888888999999999999999999999
Q ss_pred HHHcC
Q 028884 192 AKRLP 196 (202)
Q Consensus 192 ~~~i~ 196 (202)
++.+.
T Consensus 159 ~~~l~ 163 (164)
T cd04175 159 VRQIN 163 (164)
T ss_pred HHHhh
Confidence 98764
No 45
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=6.3e-32 Score=191.64 Aligned_cols=161 Identities=31% Similarity=0.602 Sum_probs=136.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|++|||||||++++..+.+...+.++.+.+.....+.. ++..+.+.+||++|++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHT-NRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEE-CCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 58999999999999999999988877777777766665555544 34558999999999999988888999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||.+++.+++.+..|+..+..... ++|+++|+||+|+.+. ... .+...++....++++++||++|.|+.++|++|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~-~~piiiv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~ 156 (166)
T cd00877 80 FDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDR-KVK-AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCC-CCcEEEEEEchhcccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHH
Confidence 999999999999999999988754 8999999999998733 232 3445667777889999999999999999999999
Q ss_pred HcCCC
Q 028884 194 RLPRP 198 (202)
Q Consensus 194 ~i~~~ 198 (202)
.+.+.
T Consensus 157 ~~~~~ 161 (166)
T cd00877 157 KLLGN 161 (166)
T ss_pred HHHhc
Confidence 88763
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=5.7e-32 Score=196.08 Aligned_cols=164 Identities=41% Similarity=0.733 Sum_probs=140.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
+||+|+|.+|+|||||+++|..+.+.. .+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++|+
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVD-GVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEEC-CEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 589999999999999999999988753 445555555544445443 445899999999999999888899999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
|||++++.+++.+..|+..+......+.|+++|+||.|+...+.+...+...++...+++++++|+++|.|+.++|++|+
T Consensus 80 v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~ 159 (191)
T cd04112 80 LYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVA 159 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 99999999999999999999887666899999999999976666777788888888899999999999999999999999
Q ss_pred HHcCCC
Q 028884 193 KRLPRP 198 (202)
Q Consensus 193 ~~i~~~ 198 (202)
+.+.+.
T Consensus 160 ~~~~~~ 165 (191)
T cd04112 160 KELKHR 165 (191)
T ss_pred HHHHHh
Confidence 888765
No 47
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=5e-32 Score=196.03 Aligned_cols=165 Identities=33% Similarity=0.546 Sum_probs=140.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.+||+|+|.+|+|||||+++|..+.+...+.++.+..+ ...+... +..+.+.+|||+|++++..++..+++.+|++|
T Consensus 4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~ii 81 (189)
T PTZ00369 4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-EETCLLDILDTAGQEEYSAMRDQYMRTGQGFL 81 (189)
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-CEEEEEEEEeCCCCccchhhHHHHhhcCCEEE
Confidence 468999999999999999999999888767666665544 3444444 44588999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+|||++++.+|+.+..|+..+.+. ...+.|+++|+||+|+.+...+...+...++...+++++++||+++.|+.++|++
T Consensus 82 lv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~ 161 (189)
T PTZ00369 82 CVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYE 161 (189)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHH
Confidence 999999999999999999988765 3458899999999998766666777788888888899999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
|++.+.+.
T Consensus 162 l~~~l~~~ 169 (189)
T PTZ00369 162 LVREIRKY 169 (189)
T ss_pred HHHHHHHH
Confidence 99877543
No 48
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=1.7e-31 Score=188.74 Aligned_cols=162 Identities=65% Similarity=1.073 Sum_probs=142.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
++||+|+|++|+|||||+++|.++.+.....++.+..+....+.+.. ..+.+.+||+||++++...+..+++.+|++++
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDD-TTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 47999999999999999999999988776666766666666666554 44899999999999999889999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
|+|++++.++.....|+..+.....+..|+++++||+|+.........+...++...++.++++|+++|.|+.++|++|+
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~ 159 (163)
T cd01860 80 VYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIA 159 (163)
T ss_pred EEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHH
Confidence 99999999999999999999887667899999999999876666777788888888899999999999999999999999
Q ss_pred HHc
Q 028884 193 KRL 195 (202)
Q Consensus 193 ~~i 195 (202)
+.+
T Consensus 160 ~~l 162 (163)
T cd01860 160 KKL 162 (163)
T ss_pred HHh
Confidence 876
No 49
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=9.8e-32 Score=189.78 Aligned_cols=161 Identities=32% Similarity=0.556 Sum_probs=134.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|..+.+.+...++............. +..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE-GKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 589999999999999999999988877766665555444444443 4558999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||++++.++..+..|+..+... .++.|+++|+||+|+... ...+...++...+++++++||++|.|++++|+.+++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~-~~~~p~ivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~ 155 (161)
T cd04124 80 FDVTRKITYKNLSKWYEELREY-RPEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIK 155 (161)
T ss_pred EECCCHHHHHHHHHHHHHHHHh-CCCCcEEEEEECccCchh---HHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 9999999999999999998765 357899999999998432 133455666677889999999999999999999999
Q ss_pred HcCCCC
Q 028884 194 RLPRPS 199 (202)
Q Consensus 194 ~i~~~~ 199 (202)
.+.+++
T Consensus 156 ~~~~~~ 161 (161)
T cd04124 156 LAVSYK 161 (161)
T ss_pred HHHhcC
Confidence 887653
No 50
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=4.7e-32 Score=196.36 Aligned_cols=162 Identities=34% Similarity=0.566 Sum_probs=138.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
+|+|+|.+|+|||||+++|..+.+...+.++.+..+ .....+ ++..+.+.+||++|+++|..++..+++.+|++|+||
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVY 78 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEE
Confidence 589999999999999999999888776666665443 233333 345578999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|++++.+|+.+..|+..+.... ..+.|+++|+||+|+.....+...+...++...+++++++||++|.|++++|+++
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l 158 (190)
T cd04144 79 SITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTL 158 (190)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 9999999999999998886653 2578999999999997777777777888888889999999999999999999999
Q ss_pred HHHcCCC
Q 028884 192 AKRLPRP 198 (202)
Q Consensus 192 ~~~i~~~ 198 (202)
++.+.++
T Consensus 159 ~~~l~~~ 165 (190)
T cd04144 159 VRALRQQ 165 (190)
T ss_pred HHHHHHh
Confidence 9887644
No 51
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.2e-31 Score=189.55 Aligned_cols=163 Identities=34% Similarity=0.661 Sum_probs=138.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||+++|.+|+|||||+++|.++.+...+.++.+.......+... +..+.+.+||+||++++..++..+++.+|++
T Consensus 3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 81 (170)
T cd04116 3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-GHFVTLQIWDTAGQERFRSLRTPFYRGSDCC 81 (170)
T ss_pred ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEEC-CeEEEEEEEeCCChHHHHHhHHHHhcCCCEE
Confidence 457999999999999999999999988877766666666555555554 4458999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcC----CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC-CeEEEeccCCCCCHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHG----SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNIN 185 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~ 185 (202)
++|||++++.+++.+..|+..+.... ..+.|+++|+||.|+. ...+..++..+++...+ .+++++||++|.|+.
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 160 (170)
T cd04116 82 LLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNVA 160 (170)
T ss_pred EEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCHH
Confidence 99999999999999999998776543 2568999999999986 44566778888888887 479999999999999
Q ss_pred HHHHHHHHHc
Q 028884 186 QLFEEIAKRL 195 (202)
Q Consensus 186 ~~~~~l~~~i 195 (202)
++|+.+++.+
T Consensus 161 ~~~~~~~~~~ 170 (170)
T cd04116 161 AAFEEAVRRV 170 (170)
T ss_pred HHHHHHHhhC
Confidence 9999998753
No 52
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.3e-31 Score=188.27 Aligned_cols=162 Identities=30% Similarity=0.539 Sum_probs=139.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+||+|+|.+|||||||+++|..+ .+...+.++.+.+.....+....+..+.+.+||++|++.+..++..+++.+|+++
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVFI 80 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 58999999999999999999864 5666666777666666666666566689999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
+|||++++.++..+..|++.+.... .+.|+++|+||+|+.+...+...+...+....+++++++|++++.|+.++|+.|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (164)
T cd04101 81 LVYDVSNKASFENCSRWVNKVRTAS-KHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESL 159 (164)
T ss_pred EEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHH
Confidence 9999999999999999999887763 579999999999987766666666677777788899999999999999999999
Q ss_pred HHHcC
Q 028884 192 AKRLP 196 (202)
Q Consensus 192 ~~~i~ 196 (202)
++.+.
T Consensus 160 ~~~~~ 164 (164)
T cd04101 160 ARAFH 164 (164)
T ss_pred HHHhC
Confidence 98763
No 53
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.5e-31 Score=190.50 Aligned_cols=163 Identities=36% Similarity=0.709 Sum_probs=141.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-hcccccccCccEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRGAAVAV 111 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~~d~~i 111 (202)
.++|+++|++|+|||||++++..+.+...+.++.+.+.....+.+.+ ..+.+.+||++|++.++ .++..+++.+|+++
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDG-ERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECC-eEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 58999999999999999999999888777777777666666666544 44899999999999886 57888899999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC---CCCHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT---ADNINQL 187 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---~~~i~~~ 187 (202)
+|||++++.++..+..|+..+... ...++|+++|+||+|+.....+...+...++...+++++++||++ +.++.++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~ 160 (170)
T cd04115 81 FVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAI 160 (170)
T ss_pred EEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHH
Confidence 999999999999999999888765 346799999999999987777777888889988899999999999 8999999
Q ss_pred HHHHHHHcC
Q 028884 188 FEEIAKRLP 196 (202)
Q Consensus 188 ~~~l~~~i~ 196 (202)
|..|++.+.
T Consensus 161 f~~l~~~~~ 169 (170)
T cd04115 161 FMTLAHKLK 169 (170)
T ss_pred HHHHHHHhh
Confidence 999998764
No 54
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=8.4e-32 Score=190.39 Aligned_cols=161 Identities=35% Similarity=0.599 Sum_probs=136.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.++|+++|.+|+|||||++++..+.+...+.++.. ......+... +..+.+.+||++|.+++..++..+++.+|++++
T Consensus 1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 78 (163)
T cd04176 1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVD-SSPSVLEILDTAGTEQFASMRDLYIKNGQGFIV 78 (163)
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEEC-CEEEEEEEEECCCcccccchHHHHHhhCCEEEE
Confidence 37999999999999999999999988777666554 3333444443 445789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||++++.++..+..|+..+... ...++|+++|+||+|+.....+...+...++...+++++++||+++.|+.++|.++
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l 158 (163)
T cd04176 79 VYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEI 158 (163)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999888765 34689999999999987666666667777887788899999999999999999999
Q ss_pred HHHc
Q 028884 192 AKRL 195 (202)
Q Consensus 192 ~~~i 195 (202)
++.+
T Consensus 159 ~~~l 162 (163)
T cd04176 159 VRQM 162 (163)
T ss_pred HHhc
Confidence 8765
No 55
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1.6e-31 Score=190.25 Aligned_cols=162 Identities=31% Similarity=0.612 Sum_probs=138.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
||+++|.+|+|||||+++|..+.+...+.++.+..+....+.+. +..+.+++||++|.++|..++..+++.+|++++||
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 80 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVF 80 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEE
Confidence 79999999999999999999999888888888777766666664 44589999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCC--CChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|++++.++..+..|+..+.... ....|+++|+||.|+.+... ....++..++.+.+.+++++||++|.|+.++|+.|
T Consensus 81 d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l 160 (170)
T cd04108 81 DLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRV 160 (170)
T ss_pred ECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999876543 33578999999999865433 34556677788888899999999999999999999
Q ss_pred HHHcCC
Q 028884 192 AKRLPR 197 (202)
Q Consensus 192 ~~~i~~ 197 (202)
+..+.+
T Consensus 161 ~~~~~~ 166 (170)
T cd04108 161 AALTFE 166 (170)
T ss_pred HHHHHH
Confidence 988754
No 56
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.3e-31 Score=196.67 Aligned_cols=166 Identities=38% Similarity=0.801 Sum_probs=146.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.+||+|+|++|+|||||+++|....+...+.++.+.++....+.+.+ ..+.+.+||++|.+.+..++..+++.+|++
T Consensus 4 ~~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~-~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~ 82 (210)
T PLN03108 4 AYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDN-KPIKLQIWDTAGQESFRSITRSYYRGAAGA 82 (210)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECC-EEEEEEEEeCCCcHHHHHHHHHHhccCCEE
Confidence 3569999999999999999999999888777777777766666666544 447899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||++++.++..+..|+..+.....++.|+++|+||+|+.....+..++..++++..+++++++|++++.|+.++|++
T Consensus 83 vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~ 162 (210)
T PLN03108 83 LLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIK 162 (210)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999998887766678999999999999877778888889999999999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
+++.+.+
T Consensus 163 l~~~~~~ 169 (210)
T PLN03108 163 TAAKIYK 169 (210)
T ss_pred HHHHHHH
Confidence 9988764
No 57
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=2.7e-31 Score=187.35 Aligned_cols=161 Identities=46% Similarity=0.815 Sum_probs=141.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
.||+++|.+++|||||+++|++..+...+.++.+.++....+...+ ..+.+.+||+||++.+..++..+++.+|++++|
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLED-KTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECC-EEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 4899999999999999999999988777777777777777776653 447899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||++++.+|..+..|+..+......+.|+++++||+|+.+......++...+++..+++++++|++++.|++++|++|.+
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~ 159 (161)
T cd01861 80 YDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIAS 159 (161)
T ss_pred EECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999887665557999999999998766667777788888888899999999999999999999987
Q ss_pred Hc
Q 028884 194 RL 195 (202)
Q Consensus 194 ~i 195 (202)
.+
T Consensus 160 ~l 161 (161)
T cd01861 160 AL 161 (161)
T ss_pred hC
Confidence 53
No 58
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1.4e-31 Score=189.77 Aligned_cols=159 Identities=33% Similarity=0.511 Sum_probs=134.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||++++.++.+...+.++....+ ...+.. +...+.+.+||++|.+.+..++..+++.+|++|+|
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 79 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTY-RQVISC-SKNICTLQITDTTGSHQFPAMQRLSISKGHAFILV 79 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEE
Confidence 7899999999999999999999988766666655433 223333 33458899999999999998888899999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
||++++.+++.+..|+..+.... .++.|+++|+||+|+.+...+...++..++...++.++++||++|.|++++|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~ 159 (165)
T cd04140 80 YSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQE 159 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHH
Confidence 99999999999999988776642 267999999999999776667777778888888899999999999999999999
Q ss_pred HHHH
Q 028884 191 IAKR 194 (202)
Q Consensus 191 l~~~ 194 (202)
|++.
T Consensus 160 l~~~ 163 (165)
T cd04140 160 LLNL 163 (165)
T ss_pred HHhc
Confidence 9864
No 59
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.3e-32 Score=182.26 Aligned_cols=163 Identities=39% Similarity=0.697 Sum_probs=152.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..++.+|+|++|+|||+|+-+|....+...+..+++.+...+++.++ +..+.++|||+.|++.|+.+...|+++.++++
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-G~~VkLqIwDtAGqErFrtitstyyrgthgv~ 85 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-GDRVKLQIWDTAGQERFRTITSTYYRGTHGVI 85 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-CcEEEEEEeecccHHHHHHHHHHHccCCceEE
Confidence 46788999999999999999999999999999999999999998887 55599999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
+|||.++.+||.+..+|++.++..+ +.+|-++|+||+|.++.+.+..++++.++...++.++++|+++..|+...|.-|
T Consensus 86 vVYDVTn~ESF~Nv~rWLeei~~nc-dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~mF~ci 164 (198)
T KOG0079|consen 86 VVYDVTNGESFNNVKRWLEEIRNNC-DSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAMFHCI 164 (198)
T ss_pred EEEECcchhhhHhHHHHHHHHHhcC-ccccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHHHHHH
Confidence 9999999999999999999999985 479999999999999999999999999999999999999999999999999888
Q ss_pred HHHcC
Q 028884 192 AKRLP 196 (202)
Q Consensus 192 ~~~i~ 196 (202)
.+.++
T Consensus 165 t~qvl 169 (198)
T KOG0079|consen 165 TKQVL 169 (198)
T ss_pred HHHHH
Confidence 76654
No 60
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2e-31 Score=190.33 Aligned_cols=158 Identities=32% Similarity=0.633 Sum_probs=134.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+|||||||+.++..+.+...+.++....+ ...+.. ++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 79 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeee-EEEEEE-CCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEE
Confidence 7999999999999999999999988777776664333 334444 45558999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEeccC
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 179 (202)
||++++++|..+. .|+..+... .++.|++||+||+|+.+. ..+..+++..+++..+. .+++|||+
T Consensus 80 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 158 (174)
T cd01871 80 FSLVSPASFENVRAKWYPEVRHH-CPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 158 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999999985 688877765 457999999999998542 24678888899998885 89999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028884 180 TADNINQLFEEIAKR 194 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~ 194 (202)
+|.|++++|+.++..
T Consensus 159 ~~~~i~~~f~~l~~~ 173 (174)
T cd01871 159 TQKGLKTVFDEAIRA 173 (174)
T ss_pred ccCCHHHHHHHHHHh
Confidence 999999999999864
No 61
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=1.6e-31 Score=196.47 Aligned_cols=157 Identities=34% Similarity=0.596 Sum_probs=133.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+++|||||+++|..+.+.. ..++.+..+..... ..+.+.+||++|++.|..++..+++.+|++|+|
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~-~~~Tig~~~~~~~~-----~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV 74 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKD-TVSTVGGAFYLKQW-----GPYNISIWDTAGREQFHGLGSMYCRGAAAVILT 74 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCC-CCCccceEEEEEEe-----eEEEEEEEeCCCcccchhhHHHHhccCCEEEEE
Confidence 589999999999999999999988754 34555544433222 237899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC-------------------CCCCChHHHHHHHHHcC----
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-------------------KREVPAQDGIEYAEKNG---- 170 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~~~~~~~~~~~~~---- 170 (202)
||++++.+|..+..|+..+.....++.|++||+||+|+.+ .+.+..+++..++++.+
T Consensus 75 ~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 75 YDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 9999999999998888777666566899999999999865 46778889999998876
Q ss_pred ----------CeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 171 ----------MFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 171 ----------~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
++|+++||++|.|++++|..++..+.
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999999998765
No 62
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=1.4e-31 Score=189.38 Aligned_cols=162 Identities=35% Similarity=0.594 Sum_probs=136.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|++|+|||||+++|.++.+...+.++..... ...... ++..+.+.+||+||++++..++..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSY-RKQIEI-DGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhE-EEEEEE-CCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEE
Confidence 4899999999999999999999887666665554333 333333 34458999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
||++++.+++.+..|+..+.+. ...+.|+++|+||+|+........++...+++..+.+++++||+++.|++++|++|+
T Consensus 79 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~ 158 (164)
T smart00173 79 YSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLV 158 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHH
Confidence 9999999999999998887654 345789999999999877666677778888888889999999999999999999999
Q ss_pred HHcCC
Q 028884 193 KRLPR 197 (202)
Q Consensus 193 ~~i~~ 197 (202)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T smart00173 159 REIRK 163 (164)
T ss_pred HHHhh
Confidence 87653
No 63
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.6e-31 Score=192.32 Aligned_cols=163 Identities=31% Similarity=0.591 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
.||+|+|++|+|||||+++|..+.+...+.++....+. ..+.. ++..+.+.+||++|++.+..++..+++.+|++|+|
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~-~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv 78 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFV-DGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLC 78 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEE-CCEEEEEEEEECCCChhccccccccccCCCEEEEE
Confidence 38999999999999999999999887777777655543 33333 34558999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------CCChHHHHHHHHHcC-CeEEEeccC
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNG-MFFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~-~~~~~~s~~ 179 (202)
||++++.+|+.+. .|+..+... .++.|+++|+||+|+.+.. .+..++...++...+ ++++++||+
T Consensus 79 ~dv~~~~sf~~~~~~~~~~i~~~-~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 157 (189)
T cd04134 79 FSVDSPDSLENVESKWLGEIREH-CPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAK 157 (189)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCC
Confidence 9999999999885 688888765 3589999999999986543 245566777777766 689999999
Q ss_pred CCCCHHHHHHHHHHHcCCCC
Q 028884 180 TADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~~~ 199 (202)
+|.|++++|++|++.+..+.
T Consensus 158 ~~~~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 158 LNRGVNEAFTEAARVALNVR 177 (189)
T ss_pred cCCCHHHHHHHHHHHHhccc
Confidence 99999999999999887654
No 64
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=2.8e-31 Score=191.82 Aligned_cols=164 Identities=30% Similarity=0.616 Sum_probs=138.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+|+|||||+++|.++.+...+.++....+. ..+...++..+.+.+|||+|++.+..++..+++.+|++|+|
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~-~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYV-TNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeE-EEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 58999999999999999999999887776666655543 33444445668999999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC----CCCChHHHHHHHHHcCC-eEEEeccCCCCCHHHH
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK----REVPAQDGIEYAEKNGM-FFIETSAKTADNINQL 187 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~ 187 (202)
||.+++.+|+.+. .|+..+... .++.|+++|+||.|+... ..+...+..+++...+. +++++||++|.|+.++
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 158 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHF-CPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEV 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHH
Confidence 9999999999885 588877654 457999999999998653 24567788888988888 8999999999999999
Q ss_pred HHHHHHHcCCCC
Q 028884 188 FEEIAKRLPRPS 199 (202)
Q Consensus 188 ~~~l~~~i~~~~ 199 (202)
|+.+++.+....
T Consensus 159 f~~l~~~~~~~~ 170 (187)
T cd04132 159 FDTAIEEALKKE 170 (187)
T ss_pred HHHHHHHHHhhh
Confidence 999999887654
No 65
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=3e-31 Score=187.60 Aligned_cols=161 Identities=32% Similarity=0.543 Sum_probs=135.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+++|.+|+|||||++++.++.+...+.++....+ .....+ ++..+.+.+||+||++++..++..+++.+|++++
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~il 79 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY-TKQCEI-DGQWAILDILDTAGQEEFSAMREQYMRTGEGFLL 79 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceE-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEE
Confidence 58999999999999999999999877655555554333 333333 3445789999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||++++.++..+..|+..+.+. ...+.|+++|+||+|+........++...+++..+++++++||++|.|++++|++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l 159 (164)
T cd04145 80 VFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDL 159 (164)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHH
Confidence 99999999999999999888765 44678999999999997766666777888888888899999999999999999999
Q ss_pred HHHc
Q 028884 192 AKRL 195 (202)
Q Consensus 192 ~~~i 195 (202)
+..+
T Consensus 160 ~~~~ 163 (164)
T cd04145 160 VRVI 163 (164)
T ss_pred HHhh
Confidence 8765
No 66
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=3.3e-31 Score=186.86 Aligned_cols=160 Identities=33% Similarity=0.580 Sum_probs=134.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+++|.+|+|||||+++|.++.+...+.++....+ ...+.+ ++..+.+.+||++|++++..++..+++.+|++++
T Consensus 1 ~~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~ 78 (162)
T cd04138 1 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 78 (162)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheE-EEEEEE-CCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEE
Confidence 36899999999999999999999887666666655433 333334 3444788999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||+++..++..+..|+..+.+. ...+.|+++|+||+|+.+ ......+...+++..+++++++||++|.|++++|++|
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 157 (162)
T cd04138 79 VFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTL 157 (162)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999898888765 345789999999999865 3455667778888888999999999999999999999
Q ss_pred HHHc
Q 028884 192 AKRL 195 (202)
Q Consensus 192 ~~~i 195 (202)
++.+
T Consensus 158 ~~~~ 161 (162)
T cd04138 158 VREI 161 (162)
T ss_pred HHHh
Confidence 8765
No 67
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=3.6e-31 Score=194.72 Aligned_cols=163 Identities=23% Similarity=0.508 Sum_probs=138.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+|+|||||+++|..+.+...+.++....+. ..+.+ ++..+.+.+|||+|++.|..++..+++.+|++|+|
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~-~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEI-DKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceE-EEEEE-CCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 68999999999999999999999988888888776654 34444 44558999999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEeccC
Q 028884 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 179 (202)
||++++++|+.+ ..|+..+... .++.|++||+||+|+... ..+..++...++++.++ +|++|||+
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~-~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk 158 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEF-CPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSR 158 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCC
Confidence 999999999998 5677766554 468999999999998542 13677889999999985 89999999
Q ss_pred CCCC-HHHHHHHHHHHcCCCC
Q 028884 180 TADN-INQLFEEIAKRLPRPS 199 (202)
Q Consensus 180 ~~~~-i~~~~~~l~~~i~~~~ 199 (202)
++.+ ++++|+.++.....+.
T Consensus 159 ~~~~~V~~~F~~~~~~~~~~~ 179 (222)
T cd04173 159 SSERSVRDVFHVATVASLGRG 179 (222)
T ss_pred cCCcCHHHHHHHHHHHHHhcc
Confidence 9985 9999999998766543
No 68
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3e-31 Score=192.90 Aligned_cols=166 Identities=25% Similarity=0.338 Sum_probs=133.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh--------hccccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA--------ALAPLYYR 105 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~~ 105 (202)
+||+|+|.+|+|||||+++|.++.+...+.++.+.......+.+ ++..+.+++|||||...+. .....+++
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 58999999999999999999999887777766655444444444 4555889999999965432 11334578
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-HcCCeEEEeccCCC
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTA 181 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~ 181 (202)
.+|++|+|||++++++++.+..|++.+.... ..++|+++|+||+|+.+.+.+..++...++. ..+++++++||++|
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g 159 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYN 159 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCCCC
Confidence 8999999999999999999999998877653 4679999999999997766666666666654 56889999999999
Q ss_pred CCHHHHHHHHHHHcCCCCC
Q 028884 182 DNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~~~ 200 (202)
.|++++|+.++..+..+..
T Consensus 160 ~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 160 WHILLLFKELLISATTRGR 178 (198)
T ss_pred CCHHHHHHHHHHHhhccCC
Confidence 9999999999998877654
No 69
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=100.00 E-value=1.6e-30 Score=183.39 Aligned_cols=161 Identities=46% Similarity=0.785 Sum_probs=138.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|.++.+.....++.........+... +..+.+.+||++|++.+..++..+++.+|++++|
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-GKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-CEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 589999999999999999999988766665565555555555544 4447899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
||+++++++..+..|+..+......++|+++|+||+|+.........+..++....+++++++|++++.|+.+++++|++
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~ 159 (162)
T cd04123 80 YDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAK 159 (162)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHH
Confidence 99999999999999999988776668999999999998866666677777888888999999999999999999999988
Q ss_pred Hc
Q 028884 194 RL 195 (202)
Q Consensus 194 ~i 195 (202)
.+
T Consensus 160 ~~ 161 (162)
T cd04123 160 RM 161 (162)
T ss_pred Hh
Confidence 75
No 70
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.98 E-value=2.4e-32 Score=183.13 Aligned_cols=167 Identities=43% Similarity=0.750 Sum_probs=154.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||+++|..-+|||||+-+|..++|...+..+....+..+.+.+.+ ....++||||.|+++|..+-+.|+++++++
T Consensus 11 s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErfHALGPIYYRgSnGa 89 (218)
T KOG0088|consen 11 SFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERFHALGPIYYRGSNGA 89 (218)
T ss_pred ceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhhhccCceEEeCCCce
Confidence 4579999999999999999999999999888888887777777777766 448999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|||+++.+||+.++.|...++.+....+.++||+||+|+.+++.+..+++.+++...+..|+++||+++.|+.++|+.
T Consensus 90 lLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~ 169 (218)
T KOG0088|consen 90 LLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFES 169 (218)
T ss_pred EEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHH
Confidence 99999999999999999999999987788889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
|...+.+.
T Consensus 170 Lt~~MiE~ 177 (218)
T KOG0088|consen 170 LTAKMIEH 177 (218)
T ss_pred HHHHHHHH
Confidence 98877553
No 71
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.98 E-value=1.1e-30 Score=186.65 Aligned_cols=159 Identities=33% Similarity=0.625 Sum_probs=133.7
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEe
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYD 115 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 115 (202)
|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.+ ++..+.+.+||++|++.+..++..+++.+|++|+|||
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d 78 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENY-SADVEV-DGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFS 78 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeee-eEEEEE-CCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEE
Confidence 68999999999999999999988776666654443 333444 3455889999999999999999999999999999999
Q ss_pred CCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEeccCCC
Q 028884 116 ITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAKTA 181 (202)
Q Consensus 116 ~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 181 (202)
++++.+|+.+. .|+..+... .+++|+++|+||+|+... ..+..+++..+++..+. .++++||+++
T Consensus 79 ~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 157 (174)
T smart00174 79 VDSPASFENVKEKWYPEVKHF-CPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQ 157 (174)
T ss_pred CCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCC
Confidence 99999999885 688888765 468999999999998652 23667778889998886 8999999999
Q ss_pred CCHHHHHHHHHHHcCC
Q 028884 182 DNINQLFEEIAKRLPR 197 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~ 197 (202)
.|++++|+.|++.+..
T Consensus 158 ~~v~~lf~~l~~~~~~ 173 (174)
T smart00174 158 EGVREVFEEAIRAALN 173 (174)
T ss_pred CCHHHHHHHHHHHhcC
Confidence 9999999999988764
No 72
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.98 E-value=1.3e-30 Score=195.17 Aligned_cols=164 Identities=26% Similarity=0.437 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
++|+|+|.+|+|||||+++|..+.+...+.++.. +.....+.+. +..+.+.+|||+|.+.|..++..++..+|++|+|
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~-~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlV 78 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR-GEVYQLDILDTSGNHPFPAMRRLSILTGDVFILV 78 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC-CEEEEEEEEECCCChhhhHHHHHHhccCCEEEEE
Confidence 4899999999999999999999888766666654 3334444443 4458999999999999988888888999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc---------CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-cCCeEEEeccCCCCC
Q 028884 114 YDITSPDSFNKAQYWVKELQKH---------GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADN 183 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~---------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 183 (202)
||+++.++|+.+..|++.+... ...++|+++|+||+|+.+...+..++..+++.. ..+.++++||+++.|
T Consensus 79 fdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~g 158 (247)
T cd04143 79 FSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSN 158 (247)
T ss_pred EeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCC
Confidence 9999999999999998888653 235799999999999976566677777776654 467899999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 028884 184 INQLFEEIAKRLPRPS 199 (202)
Q Consensus 184 i~~~~~~l~~~i~~~~ 199 (202)
++++|++|++.+..+.
T Consensus 159 I~elf~~L~~~~~~p~ 174 (247)
T cd04143 159 LDEMFRALFSLAKLPN 174 (247)
T ss_pred HHHHHHHHHHHhcccc
Confidence 9999999999775543
No 73
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=1.2e-31 Score=178.09 Aligned_cols=167 Identities=43% Similarity=0.803 Sum_probs=154.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..+..+||+++|..|+|||.|+++|..+.+++....+++.++..+++.+.+.+ +.+++|||.|+++|++....|++.++
T Consensus 3 dykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gek-iklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 3 DYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEK-IKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred ccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeE-EEEEEeeccchHHHHHHHHHHhhhcc
Confidence 34678999999999999999999999999999999999999999999886555 99999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++|++||+++-.+|+-+.+|+..++...+..+--|+|+||.|+.+.+++......+++.....-++++||++..|++.+|
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~lf 161 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEKLF 161 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHHHH
Confidence 99999999999999999999999999888888889999999999988999999999999888889999999999999999
Q ss_pred HHHHHHcC
Q 028884 189 EEIAKRLP 196 (202)
Q Consensus 189 ~~l~~~i~ 196 (202)
..++-.+.
T Consensus 162 ~~~a~rli 169 (213)
T KOG0095|consen 162 LDLACRLI 169 (213)
T ss_pred HHHHHHHH
Confidence 98876653
No 74
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.98 E-value=1.1e-30 Score=189.83 Aligned_cols=156 Identities=28% Similarity=0.570 Sum_probs=134.5
Q ss_pred EcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC
Q 028884 39 LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS 118 (202)
Q Consensus 39 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 118 (202)
+|..|||||||+++|..+.+...+.++.+.......+.+.+ ..+.+.+||++|.+.|..++..+++++|++|+|||+++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~-~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECC-EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 69999999999999999888777777777777666665544 45899999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 119 PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 119 ~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+.+|..+..|+..+.+.. +++|+++|+||+|+... .+.. +...+++..++.+++|||++|.|+.++|++|+..+.+.
T Consensus 80 ~~S~~~i~~w~~~i~~~~-~~~piilvgNK~Dl~~~-~v~~-~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 80 RVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDVKDR-KVKA-KSITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred hHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999998764 58999999999998543 3333 33467788899999999999999999999999988664
No 75
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.98 E-value=9e-31 Score=186.21 Aligned_cols=166 Identities=23% Similarity=0.292 Sum_probs=136.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.+.+||+++|.+|+|||||+++|.++.+. ..+.++.+..+....+.+. +..+.+.+||++|.+.+..++..+++.+|+
T Consensus 2 ~~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~ 80 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-GQEKYLILREVGEDEVAILLNDAELAACDV 80 (169)
T ss_pred CeEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-CeEEEEEEEecCCcccccccchhhhhcCCE
Confidence 35799999999999999999999999887 6677777766655555554 444789999999999998888989999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLF 188 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 188 (202)
+++|||++++.+++.+..|+..+.. ..++|+++|+||+|+.+.......+..++++..++ .++++||+++.|++++|
T Consensus 81 ~llv~d~~~~~s~~~~~~~~~~~~~--~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf 158 (169)
T cd01892 81 ACLVYDSSDPKSFSYCAEVYKKYFM--LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELF 158 (169)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHhcc--CCCCeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHH
Confidence 9999999999999998888876643 23799999999999865544433445666777776 36999999999999999
Q ss_pred HHHHHHcCCCC
Q 028884 189 EEIAKRLPRPS 199 (202)
Q Consensus 189 ~~l~~~i~~~~ 199 (202)
+.|++.+..++
T Consensus 159 ~~l~~~~~~~~ 169 (169)
T cd01892 159 TKLATAAQYPH 169 (169)
T ss_pred HHHHHHhhCCC
Confidence 99999887643
No 76
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.98 E-value=2.1e-30 Score=188.21 Aligned_cols=163 Identities=40% Similarity=0.709 Sum_probs=136.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
+||+|+|.+|+|||||+++|..+.+.. .+.++.+..+....+... +..+.+.+||++|.+++..++..+++.+|++++
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-ERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 589999999999999999999988764 455666665555556555 445889999999999999999989999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC----CCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK----REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
|||++++.+++.+..|+..++.. .++.|+++|+||+|+.+. ..+...+...++...+++++++|++++.|++++|
T Consensus 80 v~d~~~~~s~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 158 (193)
T cd04118 80 CYDLTDSSSFERAKFWVKELQNL-EEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF 158 (193)
T ss_pred EEECCCHHHHHHHHHHHHHHHhc-CCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHH
Confidence 99999999999999999988775 457999999999998543 2344566777788888999999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
++|++.+.++
T Consensus 159 ~~i~~~~~~~ 168 (193)
T cd04118 159 QKVAEDFVSR 168 (193)
T ss_pred HHHHHHHHHh
Confidence 9999887543
No 77
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=2.9e-30 Score=183.93 Aligned_cols=165 Identities=41% Similarity=0.748 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|++|+|||||+++|.+..+.....++.+.+.....+.+.+ ..+.+.+||+||++.+..++..+++.+|++|+|
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDD-KLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECC-EEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 5899999999999999999999888777777766666666665554 448899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC-CeEEEeccCCCCCHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLF 188 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~ 188 (202)
||++++.+++.+..|+..+..... .++|+++|+||+|+..+.....++...++...+ .+++++|+++|.|+.++|
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 159 (172)
T cd01862 80 YDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAF 159 (172)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHH
Confidence 999999999988888887655432 379999999999997655556677777777776 789999999999999999
Q ss_pred HHHHHHcCCCC
Q 028884 189 EEIAKRLPRPS 199 (202)
Q Consensus 189 ~~l~~~i~~~~ 199 (202)
+++.+.+.+..
T Consensus 160 ~~i~~~~~~~~ 170 (172)
T cd01862 160 ETIARKALEQE 170 (172)
T ss_pred HHHHHHHHhcc
Confidence 99998877653
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.98 E-value=3.7e-30 Score=181.55 Aligned_cols=160 Identities=47% Similarity=0.845 Sum_probs=137.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|++|+|||||+++|.+..+.....++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-GKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 589999999999999999999988766667777666655555543 4448899999999999998889999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
||++++.+++.+..|+..+... ...+.|+++|+||+|+.. .....++...++...+++++++|+++|.|+.++++.+.
T Consensus 80 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~ 158 (161)
T cd01863 80 YDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELV 158 (161)
T ss_pred EECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHH
Confidence 9999999999999999988776 356899999999999873 34556778888888999999999999999999999998
Q ss_pred HHc
Q 028884 193 KRL 195 (202)
Q Consensus 193 ~~i 195 (202)
+++
T Consensus 159 ~~~ 161 (161)
T cd01863 159 EKI 161 (161)
T ss_pred HhC
Confidence 764
No 79
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=8.4e-30 Score=181.15 Aligned_cols=164 Identities=41% Similarity=0.813 Sum_probs=139.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
....+|+++|++|+|||||++++..+.+.....++.+.+.....+.+. +..+.+.+||++|++.+...+..+++.+|++
T Consensus 5 ~~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~ 83 (169)
T cd04114 5 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-GEKIKLQIWDTAGQERFRSITQSYYRSANAL 83 (169)
T ss_pred CceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 357999999999999999999999887766666666666655556554 4447899999999999998888999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|||.+++.++..+..|+..+......+.|+++|+||+|+.+...+.......+.+.....++++|+++|.|++++|+.
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~ 163 (169)
T cd04114 84 ILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLD 163 (169)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999999887766668999999999998776666666667777777788999999999999999999
Q ss_pred HHHHc
Q 028884 191 IAKRL 195 (202)
Q Consensus 191 l~~~i 195 (202)
|...+
T Consensus 164 i~~~~ 168 (169)
T cd04114 164 LACRL 168 (169)
T ss_pred HHHHh
Confidence 98765
No 80
>PLN03118 Rab family protein; Provisional
Probab=99.97 E-value=4.6e-30 Score=188.81 Aligned_cols=168 Identities=38% Similarity=0.680 Sum_probs=138.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..+..+||+|+|.+|+|||||+++|.++.+. ...++.+.......+... +..+.+.+||+||++.+..++..+++.+|
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~-~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 87 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE-DLAPTIGVDFKIKQLTVG-GKRLKLTIWDTAGQERFRTLTSSYYRNAQ 87 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC-CcCCCceeEEEEEEEEEC-CEEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3345799999999999999999999998763 445555555555555554 33478999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHH-HHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 109 VAVVVYDITSPDSFNKAQY-WVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~-~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
++|+|||++++.+|..+.. |...+... ...+.|+++|+||+|+........++...++...++.++++||+++.|+++
T Consensus 88 ~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 88 GIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 9999999999999999865 65555543 234688999999999977666777788888888899999999999999999
Q ss_pred HHHHHHHHcCCC
Q 028884 187 LFEEIAKRLPRP 198 (202)
Q Consensus 187 ~~~~l~~~i~~~ 198 (202)
+|++|...+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (211)
T PLN03118 168 CFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHhh
Confidence 999999888654
No 81
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.97 E-value=1.4e-30 Score=184.47 Aligned_cols=160 Identities=33% Similarity=0.496 Sum_probs=132.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhcccccccCccEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~d~~i~v 113 (202)
||+|+|++|+|||||+++++.+.+...+.++..... ...+.. ++..+.+.+||+||+.. .......+++.+|++|+|
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v 78 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTI-DGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLV 78 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEE-CCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEE
Confidence 689999999999999999998877666555543333 333333 44558899999999885 344566788899999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC-CHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQLFEE 190 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~~~~ 190 (202)
||++++.+|+.+..|+..+.... ..+.|+++|+||+|+.+...+..++...++...+++++++|++++. |++++|+.
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~ 158 (165)
T cd04146 79 YSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHE 158 (165)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHH
Confidence 99999999999999998887753 4579999999999987766777788888898889999999999995 99999999
Q ss_pred HHHHcC
Q 028884 191 IAKRLP 196 (202)
Q Consensus 191 l~~~i~ 196 (202)
|++.+.
T Consensus 159 l~~~~~ 164 (165)
T cd04146 159 LCREVR 164 (165)
T ss_pred HHHHHh
Confidence 998765
No 82
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=6.6e-30 Score=185.23 Aligned_cols=159 Identities=26% Similarity=0.442 Sum_probs=125.8
Q ss_pred eeeEEEEcCCCCcHHHHHH-HHHhCC-----CCCCCccccce-eEEEEE-------EEecCCcEEEEEEEeCCChhhhhh
Q 028884 33 RVKLVLLGDSGVGKSCIVL-RFVRGQ-----FDPTSKVTVGA-SFLSQT-------IALQDSTTVKFEIWDTAGQERYAA 98 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~-~l~~~~-----~~~~~~~~~~~-~~~~~~-------~~~~~~~~~~~~i~D~~G~~~~~~ 98 (202)
.+||+++|..|+|||||+. ++.++. +...+.++.+. +..... ....++..+.+++|||+|++. .
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~--~ 79 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD--K 79 (195)
T ss_pred ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--h
Confidence 4799999999999999996 555443 33444555531 211111 112245569999999999875 3
Q ss_pred cccccccCccEEEEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC-------------------CCCCC
Q 028884 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE-------------------KREVP 158 (202)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~-------------------~~~~~ 158 (202)
+...+++++|++|+|||++++.||+.+. .|+..+.... ++.|+++|+||+|+.. .+.+.
T Consensus 80 ~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 80 DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-PRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 4566889999999999999999999996 6998887764 5789999999999853 35678
Q ss_pred hHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHH
Q 028884 159 AQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~ 194 (202)
.+++.+++++.+++|++|||++|.|++++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 899999999999999999999999999999999864
No 83
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.97 E-value=5.1e-30 Score=182.23 Aligned_cols=162 Identities=32% Similarity=0.577 Sum_probs=136.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.++|+++|.+|+|||||+++|.++.+...+.++....+ ...+... +..+.+.+||+||++.|..+++.+++.++++++
T Consensus 1 ~~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vl 78 (168)
T cd04177 1 DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSY-RKQVEID-GRQCDLEILDTAGTEQFTAMRELYIKSGQGFLL 78 (168)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheE-EEEEEEC-CEEEEEEEEeCCCcccchhhhHHHHhhCCEEEE
Confidence 37899999999999999999999888666666655433 3444443 344889999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC-CeEEEeccCCCCCHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-MFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~i~~~~~~ 190 (202)
|||.+++.+++.+..|+..+... ...+.|+++++||.|+........++...+++..+ ++++++||+++.|++++|++
T Consensus 79 v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~ 158 (168)
T cd04177 79 VYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFID 158 (168)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHH
Confidence 99999999999999999888764 34579999999999987766667777777777777 78999999999999999999
Q ss_pred HHHHcC
Q 028884 191 IAKRLP 196 (202)
Q Consensus 191 l~~~i~ 196 (202)
++..+.
T Consensus 159 i~~~~~ 164 (168)
T cd04177 159 LVRQII 164 (168)
T ss_pred HHHHHh
Confidence 997653
No 84
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.97 E-value=7.7e-30 Score=182.18 Aligned_cols=159 Identities=29% Similarity=0.579 Sum_probs=132.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|..+.+...+.++....+ ...+.+. +..+.+.+||++|++.+...+..+++.+|++++|
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 78 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVG-GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLIC 78 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEEC-CEEEEEEEEeCCCcccccccccccCCCCCEEEEE
Confidence 5899999999999999999999888666665554333 3344443 4447899999999999999999999999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEeccC
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 179 (202)
||.+++.+|+.+. .|+..+... .++.|+++|+||+|+.+. ..+..+++..+++..++ +++++||+
T Consensus 79 ~~~~~~~s~~~~~~~~~~~l~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 157 (174)
T cd04135 79 FSVVNPASFQNVKEEWVPELKEY-APNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSAL 157 (174)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCC
Confidence 9999999999884 688877765 678999999999998543 24566778888888886 69999999
Q ss_pred CCCCHHHHHHHHHHHc
Q 028884 180 TADNINQLFEEIAKRL 195 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i 195 (202)
+|.|++++|+.+++.+
T Consensus 158 ~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 158 TQKGLKTVFDEAILAI 173 (174)
T ss_pred cCCCHHHHHHHHHHHh
Confidence 9999999999999876
No 85
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.97 E-value=4.9e-30 Score=180.33 Aligned_cols=154 Identities=20% Similarity=0.364 Sum_probs=125.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|+.|+|||||+.++..+.+.+.+.++ ...+ ...+.+. +..+.+.+||++|.+. ..+++.+|++++|
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~-~~~~-~~~i~~~-~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv 72 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPE-GGRF-KKEVLVD-GQSHLLLIRDEGGAPD-----AQFASWVDAVIFV 72 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCC-ccce-EEEEEEC-CEEEEEEEEECCCCCc-----hhHHhcCCEEEEE
Confidence 58999999999999999999998876655443 2333 3445554 4458899999999864 2356789999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCC--CCCCChHHHHHHHHHc-CCeEEEeccCCCCCHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHE--KREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~ 189 (202)
||.+++.+|+.+..|+..+..... ++.|+++|+||.|+.. .+.+..+++.++++.. ++.+++|||+++.|++++|+
T Consensus 73 ~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~ 152 (158)
T cd04103 73 FSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQ 152 (158)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHH
Confidence 999999999999999999887643 6789999999999853 4567777888888776 58999999999999999999
Q ss_pred HHHHHc
Q 028884 190 EIAKRL 195 (202)
Q Consensus 190 ~l~~~i 195 (202)
.+++.+
T Consensus 153 ~~~~~~ 158 (158)
T cd04103 153 EAAQKI 158 (158)
T ss_pred HHHhhC
Confidence 998653
No 86
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.97 E-value=9.4e-30 Score=181.70 Aligned_cols=157 Identities=30% Similarity=0.558 Sum_probs=131.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|++|+|||||++++..+.+...+.++.. +.....+... +..+.+.+||++|++++..++..+++.+|++|+|
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v 78 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAF-DNFSVVVLVD-GKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLC 78 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcee-eeeeEEEEEC-CEEEEEEEEECCCChhhccccccccCCCcEEEEE
Confidence 5899999999999999999999888776666543 3333344444 4558899999999999999999999999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCCCChHHHHHHHHHcCC-eEEEeccC
Q 028884 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~~~~s~~ 179 (202)
||.+++.+|+.+ ..|+..+... .++.|+++|+||.|+.+ .+.+..+++..+++..+. .++++||+
T Consensus 79 ~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~ 157 (173)
T cd04130 79 FSVVNPSSFQNISEKWIPEIRKH-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSAL 157 (173)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCC
Confidence 999999999988 4688887754 45799999999999864 345677788889988887 89999999
Q ss_pred CCCCHHHHHHHHHH
Q 028884 180 TADNINQLFEEIAK 193 (202)
Q Consensus 180 ~~~~i~~~~~~l~~ 193 (202)
+|.|++++|+.++-
T Consensus 158 ~~~~v~~lf~~~~~ 171 (173)
T cd04130 158 TQKNLKEVFDTAIL 171 (173)
T ss_pred CCCCHHHHHHHHHh
Confidence 99999999998864
No 87
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.1e-29 Score=178.06 Aligned_cols=159 Identities=49% Similarity=0.900 Sum_probs=139.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+++|||||++++.+..+...+.++.+.......+.... ..+.+.+||+||...+...+..+++.+|++++|
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDG-KTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECC-EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 5899999999999999999999988777677777766666666543 348899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
+|+++++++..+..|+..+........|+++++||+|+........++...++...+.+++++|++++.|+.+++++|.+
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~~ 159 (159)
T cd00154 80 YDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLAE 159 (159)
T ss_pred EECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHhC
Confidence 99999999999999999988876578999999999998755666778888888888999999999999999999999863
No 88
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.97 E-value=1.3e-29 Score=187.34 Aligned_cols=161 Identities=30% Similarity=0.422 Sum_probs=131.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc-CccEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR-GAAVAV 111 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~-~~d~~i 111 (202)
+||+++|++|+|||||+++|..+.+. ..+.++...+.....+.+.+ ....+.+||++|.+. .....+++ .+|+++
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~-~~~~l~i~Dt~G~~~--~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDG-EESTLVVIDHWEQEM--WTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECC-EEEEEEEEeCCCcch--HHHhHHhhcCCCEEE
Confidence 48999999999999999999888775 55555554345455555544 448899999999872 22334555 899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+|||++++.+|..+..|+..+.... ..++|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|++
T Consensus 78 lV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~ 157 (221)
T cd04148 78 VVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEG 157 (221)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHH
Confidence 9999999999999999998887653 357999999999999777777777778888888899999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
|+..+..
T Consensus 158 l~~~~~~ 164 (221)
T cd04148 158 IVRQIRL 164 (221)
T ss_pred HHHHHHh
Confidence 9988853
No 89
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-32 Score=181.52 Aligned_cols=171 Identities=32% Similarity=0.588 Sum_probs=154.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecC--------CcEEEEEEEeCCChhhhhhc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD--------STTVKFEIWDTAGQERYAAL 99 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~i~D~~G~~~~~~~ 99 (202)
...++.++.+.+|+.|+|||||+.++..+++......+.++++..+.+.+.. +..+.+++|||.|+++|+++
T Consensus 4 GdydylikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSL 83 (219)
T KOG0081|consen 4 GDYDYLIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSL 83 (219)
T ss_pred ccHHHHHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence 3456789999999999999999999999999999999999999888877752 23588999999999999999
Q ss_pred ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEecc
Q 028884 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
...+++.+=+++++||+++..||-+++.|+..++.+.. .+..+++++||+|+.+.+.+..+++.+++.++++||+++||
T Consensus 84 TTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA 163 (219)
T KOG0081|consen 84 TTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSA 163 (219)
T ss_pred HHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeecc
Confidence 99999999999999999999999999999999987632 34448999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcCCC
Q 028884 179 KTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 179 ~~~~~i~~~~~~l~~~i~~~ 198 (202)
-+|.|+....+.|+..++++
T Consensus 164 ~tg~Nv~kave~LldlvM~R 183 (219)
T KOG0081|consen 164 CTGTNVEKAVELLLDLVMKR 183 (219)
T ss_pred ccCcCHHHHHHHHHHHHHHH
Confidence 99999999999998887654
No 90
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=6e-29 Score=175.69 Aligned_cols=162 Identities=32% Similarity=0.567 Sum_probs=135.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||++++....+...+.++....+ ...... ++..+.+.+||+||+..+...+..+++.+|++++|
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLV 78 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhE-EEEEEE-CCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEE
Confidence 5899999999999999999999887665555544333 233333 44558999999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
+|.+++.++..+..|+..+... ...++|+++|+||+|+.........+...++..++++++++|++++.|+.++|++|.
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~ 158 (164)
T cd04139 79 FSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLV 158 (164)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHH
Confidence 9999999999998898887766 335799999999999876555666777788888889999999999999999999999
Q ss_pred HHcCC
Q 028884 193 KRLPR 197 (202)
Q Consensus 193 ~~i~~ 197 (202)
+.+.+
T Consensus 159 ~~~~~ 163 (164)
T cd04139 159 REIRQ 163 (164)
T ss_pred HHHHh
Confidence 88753
No 91
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=8.8e-29 Score=174.08 Aligned_cols=159 Identities=38% Similarity=0.614 Sum_probs=134.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
||+|+|++|+|||||++++++..+.....++.. +.....+.. ++..+.+++||+||+..+...+..+++.+|++++||
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 78 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVV-DGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVY 78 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEE-CCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEE
Confidence 689999999999999999998876666555544 333333443 334488999999999999988999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
|.++++++..+..|+..+..... ...|+++|+||+|+........+++..++...+.+++++|++++.|++++|++|.+
T Consensus 79 d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~ 158 (160)
T cd00876 79 SITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVR 158 (160)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHh
Confidence 99999999999888888776633 68999999999998876667778888888888889999999999999999999987
Q ss_pred Hc
Q 028884 194 RL 195 (202)
Q Consensus 194 ~i 195 (202)
.+
T Consensus 159 ~i 160 (160)
T cd00876 159 EI 160 (160)
T ss_pred hC
Confidence 64
No 92
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.97 E-value=2e-29 Score=181.51 Aligned_cols=165 Identities=19% Similarity=0.295 Sum_probs=127.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..++|+++|.+|||||||++++..+.+... .++.+.......+...++..+.+.+||++|++.+..++..+++.+|++|
T Consensus 2 ~~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 468999999999999999999998776543 4454444444444443445589999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH------cCCeEEEeccCCCCCH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------NGMFFIETSAKTADNI 184 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------~~~~~~~~s~~~~~~i 184 (202)
+|+|++++.++.....|+..+... ...++|++||+||+|+.+. ....+...+... ..++++++||+++.|+
T Consensus 81 ~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi 158 (183)
T cd04152 81 FVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPACAIIGEGL 158 (183)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEeecccCCCH
Confidence 999999998898888888776553 3457999999999997642 233333333321 1246889999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 028884 185 NQLFEEIAKRLPRPS 199 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~ 199 (202)
++++++|++.+.++.
T Consensus 159 ~~l~~~l~~~l~~~~ 173 (183)
T cd04152 159 QEGLEKLYEMILKRR 173 (183)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998886543
No 93
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=7.4e-29 Score=176.18 Aligned_cols=154 Identities=22% Similarity=0.373 Sum_probs=120.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.++|+++|.+|+|||||+++|..+.+.. ..++.+.... .+.. ..+.+++||++|++.++.++..+++.+|++|
T Consensus 8 ~~~kv~i~G~~~~GKTsli~~l~~~~~~~-~~~t~g~~~~--~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii 81 (168)
T cd04149 8 KEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVE--TVTY---KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 81 (168)
T ss_pred CccEEEEECcCCCCHHHHHHHHccCCCcc-ccCCcccceE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEEE
Confidence 46899999999999999999998876643 3445544432 2222 2378999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-----cCCeEEEeccCCCCCHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNIN 185 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 185 (202)
+|||++++.++.....|+..+... ..+++|++||+||+|+... +..++...++.. ..+.++++||++|.|++
T Consensus 82 ~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~ 159 (168)
T cd04149 82 FVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 159 (168)
T ss_pred EEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChH
Confidence 999999999998887777666443 3457899999999998642 344555554321 23468999999999999
Q ss_pred HHHHHHHH
Q 028884 186 QLFEEIAK 193 (202)
Q Consensus 186 ~~~~~l~~ 193 (202)
++|++|.+
T Consensus 160 ~~~~~l~~ 167 (168)
T cd04149 160 EGLTWLSS 167 (168)
T ss_pred HHHHHHhc
Confidence 99999864
No 94
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=2e-28 Score=178.42 Aligned_cols=163 Identities=29% Similarity=0.530 Sum_probs=130.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
||+++|.+|+|||||+++|+.+.+...+.++.. ......+.+.+ ..+.+.+||++|+..+..++..++..+|++|+||
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~ 78 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVE-EMHRKEYEVGG-VSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVY 78 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchh-hheeEEEEECC-EEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEE
Confidence 689999999999999999999887765555543 23334444443 4478999999999999888888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCC-CCCChHHHHHHHH-HcCCeEEEeccCCCCCHHHHHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEK-REVPAQDGIEYAE-KNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|++++.+++.+..|+..+... ...++|+++|+||+|+.+. ..+...+..+... ..+.+++++|+++|.|+.++|++|
T Consensus 79 d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l 158 (198)
T cd04147 79 AVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKEL 158 (198)
T ss_pred ECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHH
Confidence 999999999999998887765 3357999999999998653 4444444444333 345789999999999999999999
Q ss_pred HHHcCCCC
Q 028884 192 AKRLPRPS 199 (202)
Q Consensus 192 ~~~i~~~~ 199 (202)
++.+....
T Consensus 159 ~~~~~~~~ 166 (198)
T cd04147 159 LRQANLPY 166 (198)
T ss_pred HHHhhccc
Confidence 99876543
No 95
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.97 E-value=3.9e-28 Score=173.55 Aligned_cols=159 Identities=35% Similarity=0.652 Sum_probs=129.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
.||+|+|++|||||||+++|..+.+...+.++....+. ..+.+. +..+.+.+||++|++.+...+..++..+|++++|
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYV-ADIEVD-GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceE-EEEEEC-CEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 58999999999999999999998887777666654442 334443 4447899999999999998888889999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEeccC
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~s~~ 179 (202)
||++++++++.+. .|+..+... ..++|+++|+||.|+.+. ..+...+..+++...+. .+++|||+
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 158 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAK 158 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEeccc
Confidence 9999999998884 587777654 457999999999998543 22445667777777764 79999999
Q ss_pred CCCCHHHHHHHHHHHc
Q 028884 180 TADNINQLFEEIAKRL 195 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i 195 (202)
+|.|++++|++|++.+
T Consensus 159 ~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 159 TKEGVREVFEMATRAA 174 (175)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 9999999999998764
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.8e-28 Score=176.13 Aligned_cols=164 Identities=34% Similarity=0.565 Sum_probs=135.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
.||+++|.+|+|||||++++....+.....++..... ...+... +..+.+.+||+||++++...+..++..+|++++|
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTF-SKIIRYK-GQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILV 79 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhE-EEEEEEC-CEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEE
Confidence 6899999999999999999999887655555543333 3333443 3447899999999999998998999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
||.++..+++.+..|+..+.+. ...+.|+++|+||+|+...+.....+...++...+.+++++|++++.|+.++|++|.
T Consensus 80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~ 159 (180)
T cd04137 80 YSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLI 159 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHH
Confidence 9999999999998888877654 456789999999999876666666667777788888999999999999999999999
Q ss_pred HHcCCCC
Q 028884 193 KRLPRPS 199 (202)
Q Consensus 193 ~~i~~~~ 199 (202)
+.+.+..
T Consensus 160 ~~~~~~~ 166 (180)
T cd04137 160 EEIEKVE 166 (180)
T ss_pred HHHHHhc
Confidence 8876553
No 97
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.7e-28 Score=176.28 Aligned_cols=160 Identities=18% Similarity=0.347 Sum_probs=122.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||+++|..+||||||+++|..+.+. ...++.+... ..+.. ..+.+++||+||++.++.+|..+++++|++
T Consensus 15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~~-~~~pt~g~~~--~~~~~---~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~i 88 (181)
T PLN00223 15 KKEMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNV--ETVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGL 88 (181)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCc-cccCCcceeE--EEEEE---CCEEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 45689999999999999999999987764 3445555433 22332 237899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC-----CeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG-----MFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i 184 (202)
|+|||+++++++.....++..+... ..++.|++||+||.|+.... ..++......... +.++++||++|+|+
T Consensus 89 I~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv 166 (181)
T PLN00223 89 IFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRQRHWYIQSTCATSGEGL 166 (181)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCceEEEeccCCCCCCH
Confidence 9999999999998887777665432 23578999999999986543 2333333222111 23568999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028884 185 NQLFEEIAKRLPRP 198 (202)
Q Consensus 185 ~~~~~~l~~~i~~~ 198 (202)
.++|++|++.+..+
T Consensus 167 ~e~~~~l~~~~~~~ 180 (181)
T PLN00223 167 YEGLDWLSNNIANK 180 (181)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999987654
No 98
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.96 E-value=2.1e-28 Score=174.09 Aligned_cols=157 Identities=21% Similarity=0.373 Sum_probs=123.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
||+++|.++||||||+++|.+..+.. +.++.+.... .+.. ..+.+.+||+||+..+...+..+++.+|++++|+
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~-~~~T~~~~~~--~~~~---~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 74 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ-PIPTIGFNVE--TVEY---KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVV 74 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCceeEE--EEEE---CCEEEEEEECCCChhcchHHHHHhccCCEEEEEE
Confidence 68999999999999999999886543 4445443332 2322 2378999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC------CeEEEeccCCCCCHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG------MFFIETSAKTADNINQL 187 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~ 187 (202)
|.+++.++..+..|+..+... ...+.|++||+||+|+.+ .+..++...++.... +.++++||++|.|+.++
T Consensus 75 D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~ 152 (169)
T cd04158 75 DSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEG 152 (169)
T ss_pred eCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHH
Confidence 999999999998888887654 334689999999999864 344555555543221 25889999999999999
Q ss_pred HHHHHHHcCCCC
Q 028884 188 FEEIAKRLPRPS 199 (202)
Q Consensus 188 ~~~l~~~i~~~~ 199 (202)
|++|.+.+....
T Consensus 153 f~~l~~~~~~~~ 164 (169)
T cd04158 153 LDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHHhhcc
Confidence 999998876653
No 99
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.96 E-value=2.8e-29 Score=177.66 Aligned_cols=153 Identities=19% Similarity=0.303 Sum_probs=122.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
+|+++|.+|+|||||+++|.++.+...+.++.+... ..+... .+.+.+||++|++.++.++..+++.+|++|+||
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~----~~i~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~ 75 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS----VAIPTQ-DAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVV 75 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce----EEEeeC-CeEEEEEECCCCcchhHHHHHHHhhCCEEEEEE
Confidence 489999999999999999999877666666655432 222223 388999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCCh----HHHHHHHHHcCCeEEEeccCC------CCCH
Q 028884 115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA----QDGIEYAEKNGMFFIETSAKT------ADNI 184 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~----~~~~~~~~~~~~~~~~~s~~~------~~~i 184 (202)
|.+++.++...+.|+..+.... +++|+++|+||.|+........ .++..++++.++.++++||++ ++|+
T Consensus 76 D~t~~~s~~~~~~~l~~~~~~~-~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v 154 (164)
T cd04162 76 DSADSERLPLARQELHQLLQHP-PDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAV 154 (164)
T ss_pred ECCCHHHHHHHHHHHHHHHhCC-CCCcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHH
Confidence 9999999999888888876543 6899999999999866543221 123445556678889998888 9999
Q ss_pred HHHHHHHHH
Q 028884 185 NQLFEEIAK 193 (202)
Q Consensus 185 ~~~~~~l~~ 193 (202)
+++|+.++.
T Consensus 155 ~~~~~~~~~ 163 (164)
T cd04162 155 KDLLSQLIN 163 (164)
T ss_pred HHHHHHHhc
Confidence 999998864
No 100
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=5.9e-29 Score=177.83 Aligned_cols=157 Identities=21% Similarity=0.357 Sum_probs=120.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..+||+++|.+|+|||||+++|..+.+. .+.++.+.... .+.. ..+.+++||++|++.+..++..+++.+|++|
T Consensus 12 ~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~---~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii 85 (175)
T smart00177 12 KEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTY---KNISFTVWDVGGQDKIRPLWRHYYTNTQGLI 85 (175)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEE---CCEEEEEEECCCChhhHHHHHHHhCCCCEEE
Confidence 4699999999999999999999877663 34455554432 2222 2378999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNIN 185 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 185 (202)
+|||++++.+++....|+..+... ..++.|++||+||.|+.+.. ...+...... ...+.++++||++|.|+.
T Consensus 86 ~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~ 163 (175)
T smart00177 86 FVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSGDGLY 163 (175)
T ss_pred EEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCCCCHH
Confidence 999999999999988888776543 34578999999999986432 2222222221 123347789999999999
Q ss_pred HHHHHHHHHcC
Q 028884 186 QLFEEIAKRLP 196 (202)
Q Consensus 186 ~~~~~l~~~i~ 196 (202)
++|++|.+.+.
T Consensus 164 e~~~~l~~~~~ 174 (175)
T smart00177 164 EGLTWLSNNLK 174 (175)
T ss_pred HHHHHHHHHhc
Confidence 99999988753
No 101
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-28 Score=162.79 Aligned_cols=166 Identities=40% Similarity=0.751 Sum_probs=153.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++-+++|+-|+|||.|+++|...++...-..+++.++....+...+ .++.+++||+.|+++|+...+.|++++.+.
T Consensus 9 syifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsg-qkiklqiwdtagqerfravtrsyyrgaaga 87 (215)
T KOG0097|consen 9 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQERFRAVTRSYYRGAAGA 87 (215)
T ss_pred hheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecC-cEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 5689999999999999999999999999888888888888777777654 459999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+.|||++.+.++..+..|+...+...+++..+++++||.|+...+++..+++.+++.+.+..++++|+++|.|+.++|-.
T Consensus 88 lmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~nvedafle 167 (215)
T KOG0097|consen 88 LMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQNVEDAFLE 167 (215)
T ss_pred eEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
.+..|+.
T Consensus 168 ~akkiyq 174 (215)
T KOG0097|consen 168 TAKKIYQ 174 (215)
T ss_pred HHHHHHH
Confidence 7777654
No 102
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.96 E-value=8.4e-31 Score=171.02 Aligned_cols=161 Identities=40% Similarity=0.694 Sum_probs=145.6
Q ss_pred EEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeC
Q 028884 38 LLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDI 116 (202)
Q Consensus 38 v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 116 (202)
++|..++|||.|+-+|..+.+- .....+.+.++..+.+... +.++.+++|||.|+++|++....|++.+|+++++||+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fistvgid~rnkli~~~-~~kvklqiwdtagqerfrsvt~ayyrda~allllydi 80 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMD-DKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDI 80 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceeeeeeeccccceeccC-CcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeec
Confidence 6899999999999999887764 4456777888877777665 4559999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 117 TSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 117 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
.+..||++.+.|+..+.......+.+++++||+|+..++.+..++...++..+++|++++|+++|.|++.+|-.|++.++
T Consensus 81 ankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 81 ANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHH
Confidence 99999999999999999887778889999999999888899999999999999999999999999999999999999887
Q ss_pred CCC
Q 028884 197 RPS 199 (202)
Q Consensus 197 ~~~ 199 (202)
+.+
T Consensus 161 k~~ 163 (192)
T KOG0083|consen 161 KLK 163 (192)
T ss_pred Hhc
Confidence 653
No 103
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.96 E-value=8.2e-28 Score=173.70 Aligned_cols=165 Identities=32% Similarity=0.587 Sum_probs=132.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
.||+|+|++|+|||||+++|..+.+...+.++....+. ..+... +..+.+.+||++|++.+......++..+|+++++
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVD-GKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEEC-CEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 58999999999999999999987776655554443332 233333 3447899999999988877777778899999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC----------CCCCChHHHHHHHHHcCC-eEEEeccCCC
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE----------KREVPAQDGIEYAEKNGM-FFIETSAKTA 181 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~----------~~~~~~~~~~~~~~~~~~-~~~~~s~~~~ 181 (202)
||+++.+++..+. .|+..++.. .++.|+++|+||+|+.+ ...+..++...+++..+. +++++||++|
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~ 158 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRY-CPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTG 158 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCC
Confidence 9999999999985 699888765 45799999999999854 234555677888888875 7999999999
Q ss_pred CCHHHHHHHHHHHcCCCCCC
Q 028884 182 DNINQLFEEIAKRLPRPSPS 201 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~~~~ 201 (202)
.|++++|+++.+.+..-+++
T Consensus 159 ~~v~~~f~~l~~~~~~~~~~ 178 (187)
T cd04129 159 EGVDDVFEAATRAALLVRKS 178 (187)
T ss_pred CCHHHHHHHHHHHHhcccCc
Confidence 99999999999877665543
No 104
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.96 E-value=7.1e-28 Score=170.86 Aligned_cols=160 Identities=25% Similarity=0.389 Sum_probs=121.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|.++.+...+..+ .... .....+. +..+.+.+||++|.+.+...+..+++.+|++++|
T Consensus 1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~-~~~~-~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 77 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRV-LPEI-TIPADVT-PERVPTTIVDTSSRPQDRANLAAEIRKANVICLV 77 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCcCCccCCCc-ccce-Eeeeeec-CCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEE
Confidence 48999999999999999999998876543322 2222 2222333 3448999999999988877777778999999999
Q ss_pred EeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--ChHHHHHHHHHc-C-CeEEEeccCCCCCHHHHH
Q 028884 114 YDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKN-G-MFFIETSAKTADNINQLF 188 (202)
Q Consensus 114 ~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~-~-~~~~~~s~~~~~~i~~~~ 188 (202)
||++++.+++.+. .|+..++... .+.|+++|+||+|+.+.... ..++...++... . ..++++||+++.|++++|
T Consensus 78 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf 156 (166)
T cd01893 78 YSVDRPSTLERIRTKWLPLIRRLG-VKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVF 156 (166)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHH
Confidence 9999999999974 6888787664 48999999999998665432 122233333333 2 379999999999999999
Q ss_pred HHHHHHcCC
Q 028884 189 EEIAKRLPR 197 (202)
Q Consensus 189 ~~l~~~i~~ 197 (202)
+.+.+.+.+
T Consensus 157 ~~~~~~~~~ 165 (166)
T cd01893 157 YYAQKAVLH 165 (166)
T ss_pred HHHHHHhcC
Confidence 999988765
No 105
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=177.21 Aligned_cols=164 Identities=35% Similarity=0.584 Sum_probs=147.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
...+|+++|.+|+|||+|..+|..+.+...+.++++..+ .+.+.+. +....+.|+||+|++++..+...++.++|+++
T Consensus 2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y-~k~~~v~-~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~ 79 (196)
T KOG0395|consen 2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSY-RKELTVD-GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFL 79 (196)
T ss_pred CceEEEEECCCCCCcchheeeecccccccccCCCccccc-eEEEEEC-CEEEEEEEEcCCCcccChHHHHHhhccCcEEE
Confidence 468999999999999999999999999999998888444 4445555 55589999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+||++++..||+.+..+++.+.+. ....+|+++|+||+|+...+.+..++...++..++++++++||+...+++++|..
T Consensus 80 lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~~F~~ 159 (196)
T KOG0395|consen 80 LVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDEVFYE 159 (196)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHHHHHH
Confidence 999999999999999999998554 4456899999999999988999999999999999999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
|+..+..
T Consensus 160 L~r~~~~ 166 (196)
T KOG0395|consen 160 LVREIRL 166 (196)
T ss_pred HHHHHHh
Confidence 9998776
No 106
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=8.7e-29 Score=174.35 Aligned_cols=152 Identities=19% Similarity=0.370 Sum_probs=115.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.++||||||++++..+.+. .+.++.+.... .+.. ..+.+.+||++|++++..++..+++.+|++|+|
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v 74 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVE--TVEY---KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 74 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEE
Confidence 48999999999999999999877765 34555544332 2222 237899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~ 187 (202)
||++++.++....+|+..+... ...+.|++|++||+|+.+.. ...+...... ...+.++++||++|.|++++
T Consensus 75 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~ 152 (159)
T cd04150 75 VDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM--SAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEG 152 (159)
T ss_pred EeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC--CHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHH
Confidence 9999999999888877766432 33468999999999985432 2222222211 12345789999999999999
Q ss_pred HHHHHH
Q 028884 188 FEEIAK 193 (202)
Q Consensus 188 ~~~l~~ 193 (202)
|++|.+
T Consensus 153 ~~~l~~ 158 (159)
T cd04150 153 LDWLSN 158 (159)
T ss_pred HHHHhc
Confidence 999864
No 107
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.4e-27 Score=173.40 Aligned_cols=162 Identities=24% Similarity=0.390 Sum_probs=132.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEec----CCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ----DSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
+||+++|..++|||||+++|.++.+...+.++.+.....+.+.+. ++..+.+.+||++|++.|..++..+++.+|+
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~ 80 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNG 80 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCE
Confidence 589999999999999999999999887777787766666666554 2456899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHc-------------------CCCCCeEEEEEeCCCCCCCCCCChH----HHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKH-------------------GSPDIVMALVGNKADLHEKREVPAQ----DGIEYA 166 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-------------------~~~~~p~ivv~nK~D~~~~~~~~~~----~~~~~~ 166 (202)
+|+|||++++.|++.+..|+..+... ...+.|++||+||.|+.+++.+... ....++
T Consensus 81 iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~~~~~~~~~~~~ia 160 (202)
T cd04102 81 IILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKESSGNLVLTARGFVA 160 (202)
T ss_pred EEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhcccchHHHhhHhhhHH
Confidence 99999999999999999999998653 2357899999999998765444333 244567
Q ss_pred HHcCCeEEEeccCCCC----------CHHHHHHHHHHHc
Q 028884 167 EKNGMFFIETSAKTAD----------NINQLFEEIAKRL 195 (202)
Q Consensus 167 ~~~~~~~~~~s~~~~~----------~i~~~~~~l~~~i 195 (202)
.+.+++.++.++.++. .+..+|+.++++-
T Consensus 161 ~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (202)
T cd04102 161 EQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEKR 199 (202)
T ss_pred HhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHhh
Confidence 8899998998888664 3566777766653
No 108
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=7.4e-28 Score=171.89 Aligned_cols=155 Identities=21% Similarity=0.293 Sum_probs=120.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...++|+++|++|+|||||+++|.+..+. ...++.+. ....+.+. .+.+.+||+||++.++.++..+++.+|++
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~---~~~l~l~D~~G~~~~~~~~~~~~~~~d~~ 85 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDID-TISPTLGF--QIKTLEYE---GYKLNIWDVGGQKTLRPYWRNYFESTDAL 85 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCC-CcCCcccc--ceEEEEEC---CEEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 45689999999999999999999987543 33444432 22333333 27899999999999988999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i 184 (202)
++|+|.+++.++.....|+..+... ...+.|+++|+||+|+.+.. ..++...+.. ...++++++||++|.|+
T Consensus 86 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 163 (173)
T cd04154 86 IWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTGEGL 163 (173)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCCcCH
Confidence 9999999999999888888776543 34689999999999986533 3344444432 23567999999999999
Q ss_pred HHHHHHHHH
Q 028884 185 NQLFEEIAK 193 (202)
Q Consensus 185 ~~~~~~l~~ 193 (202)
+++|++|++
T Consensus 164 ~~l~~~l~~ 172 (173)
T cd04154 164 LQGIDWLVD 172 (173)
T ss_pred HHHHHHHhc
Confidence 999999874
No 109
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.96 E-value=1.5e-27 Score=169.79 Aligned_cols=157 Identities=33% Similarity=0.693 Sum_probs=127.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+++|.+|+|||||+++|.++.+...+.++..... ...... .+..+.+++||+||++.+......+++.+|++++|
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v 78 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNY-SATVTV-DGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLIC 78 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeee-EEEEEE-CCEEEEEEEEeCCCcccccccchhhcCCCCEEEEE
Confidence 6899999999999999999999887555555544333 333333 34458899999999998888888888999999999
Q ss_pred EeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-----------CCChHHHHHHHHHcCC-eEEEeccCC
Q 028884 114 YDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKR-----------EVPAQDGIEYAEKNGM-FFIETSAKT 180 (202)
Q Consensus 114 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~s~~~ 180 (202)
||.+++.++... ..|+..+... ..+.|+++|+||+|+.+.. .+..++...++...++ +++++|+++
T Consensus 79 ~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 157 (171)
T cd00157 79 FSVDSPSSFENVKTKWIPEIRHY-CPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALT 157 (171)
T ss_pred EECCCHHHHHHHHHHHHHHHHhh-CCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCC
Confidence 999999988776 5677777665 3489999999999986554 2346677778888877 899999999
Q ss_pred CCCHHHHHHHHHH
Q 028884 181 ADNINQLFEEIAK 193 (202)
Q Consensus 181 ~~~i~~~~~~l~~ 193 (202)
+.|+.++|++|++
T Consensus 158 ~~gi~~l~~~i~~ 170 (171)
T cd00157 158 QEGVKEVFEEAIR 170 (171)
T ss_pred CCCHHHHHHHHhh
Confidence 9999999999875
No 110
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.96 E-value=7.5e-28 Score=173.08 Aligned_cols=160 Identities=19% Similarity=0.352 Sum_probs=120.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||+++|++++|||||++++..+.+.. +.++.+.... .+.. ..+.+++||++|++.++.++..+++.+|++
T Consensus 15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~~-~~~T~~~~~~--~~~~---~~~~~~l~D~~G~~~~~~~~~~~~~~ad~i 88 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVVT-TIPTIGFNVE--TVEY---KNLKFTMWDVGGQDKLRPLWRHYYQNTNGL 88 (182)
T ss_pred CCccEEEEEcCCCCCHHHHHHHHhcCCccc-cCCccccceE--EEEE---CCEEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 346899999999999999999998777643 4455544432 2322 237899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i 184 (202)
|+|+|++++.++.....++..+... ...+.|++||+||.|+.+.. ...+...... ...+.++++||++|.|+
T Consensus 89 I~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv 166 (182)
T PTZ00133 89 IFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTAQGL 166 (182)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCCCCH
Confidence 9999999999998887777665432 33578999999999985432 2222222211 11235678999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028884 185 NQLFEEIAKRLPRP 198 (202)
Q Consensus 185 ~~~~~~l~~~i~~~ 198 (202)
+++|++|.+.+.+.
T Consensus 167 ~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 167 YEGLDWLSANIKKS 180 (182)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999877653
No 111
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=3.7e-27 Score=173.88 Aligned_cols=166 Identities=30% Similarity=0.549 Sum_probs=138.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
+....+||+++|++|||||||++++..+.+...+.++.+.+.....+...+ ..+.+.+||++|++.+..++..++..++
T Consensus 5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~i~i~~~Dt~g~~~~~~~~~~~~~~~~ 83 (215)
T PTZ00132 5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNC-GPICFNVWDTAGQEKFGGLRDGYYIKGQ 83 (215)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECC-eEEEEEEEECCCchhhhhhhHHHhccCC
Confidence 345579999999999999999999998888777788887777665555444 4489999999999999888888999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++++|||+++..++..+..|+..+.... .+.|+++++||+|+.+. ... .+...++...++.++++|++++.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~i~lv~nK~Dl~~~-~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f 160 (215)
T PTZ00132 84 CAIIMFDVTSRITYKNVPNWHRDIVRVC-ENIPIVLVGNKVDVKDR-QVK-ARQITFHRKKNLQYYDISAKSNYNFEKPF 160 (215)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECccCccc-cCC-HHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999999887663 57899999999997543 222 33345677788899999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
.+|+..+...
T Consensus 161 ~~ia~~l~~~ 170 (215)
T PTZ00132 161 LWLARRLTND 170 (215)
T ss_pred HHHHHHHhhc
Confidence 9999887654
No 112
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=2.6e-27 Score=167.07 Aligned_cols=152 Identities=17% Similarity=0.245 Sum_probs=114.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+|+++|.+|+|||||+++|.+... ...+.++.+... ..+.. ..+.+.+||+||.+.+..++..+++.+|++|+|
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~--~~~~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 75 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNV--ESFEK---GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFV 75 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceecCccccce--EEEEE---CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEE
Confidence 589999999999999999998753 334445544332 22222 237899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc---CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH---GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNIN 185 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~ 185 (202)
+|++++.++.....|+..+... ...++|+++|+||+|+.+... ..+...... ....+++++||++|.|++
T Consensus 76 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~ 153 (162)
T cd04157 76 IDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASNALTGEGLD 153 (162)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEeeCCCCCchH
Confidence 9999999998888888776543 235799999999999865322 222221111 123458999999999999
Q ss_pred HHHHHHHH
Q 028884 186 QLFEEIAK 193 (202)
Q Consensus 186 ~~~~~l~~ 193 (202)
++|++|.+
T Consensus 154 ~~~~~l~~ 161 (162)
T cd04157 154 EGVQWLQA 161 (162)
T ss_pred HHHHHHhc
Confidence 99999875
No 113
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.95 E-value=7.6e-28 Score=170.29 Aligned_cols=167 Identities=34% Similarity=0.676 Sum_probs=147.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+|++|+|+.++|||+|+-.+..+.++..+.|+....+ ...+.+.++..+.+.+|||.|+++|..++...++.+|++
T Consensus 2 ~~~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-s~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvf 80 (198)
T KOG0393|consen 2 SRRIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-SANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVF 80 (198)
T ss_pred ceeeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-eEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEE
Confidence 3579999999999999999999999999999998888555 455566556779999999999999999888899999999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcC-CeEEEe
Q 028884 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~~ 176 (202)
++||++.++.||+++ .+|+..++.++ ++.|+|+|++|.|+... ..+..++...++++.+ ..|++|
T Consensus 81 l~cfsv~~p~S~~nv~~kW~pEi~~~c-p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~Ec 159 (198)
T KOG0393|consen 81 LLCFSVVSPESFENVKSKWIPEIKHHC-PNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLEC 159 (198)
T ss_pred EEEEEcCChhhHHHHHhhhhHHHHhhC-CCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeee
Confidence 999999999999987 88999999885 89999999999998632 3577888999999998 569999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
||++..|++++|+..+.....+.
T Consensus 160 Sa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 160 SALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred hhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999998886653
No 114
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=3.2e-27 Score=167.62 Aligned_cols=153 Identities=19% Similarity=0.190 Sum_probs=117.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
+|+++|.+|+|||||+++|.+. +...+.++.+.. ...+... . +.+.+||+||+..++.++..+++.+|++|+||
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~--~~~~~~~--~-~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~ 74 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFT--PTKLRLD--K-YEVCIFDLGGGANFRGIWVNYYAEAHGLVFVV 74 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccccCcccce--EEEEEEC--C-EEEEEEECCCcHHHHHHHHHHHcCCCEEEEEE
Confidence 4899999999999999999976 445555555543 2333332 2 78999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHH----HHHHHHHc--CCeEEEeccCCC------
Q 028884 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQD----GIEYAEKN--GMFFIETSAKTA------ 181 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~----~~~~~~~~--~~~~~~~s~~~~------ 181 (202)
|++++.++..+..|+..+... ...++|+++|+||.|+.......... ...++.+. .+.+++|||++|
T Consensus 75 D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~ 154 (167)
T cd04161 75 DSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKID 154 (167)
T ss_pred ECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccc
Confidence 999999999999998888654 23578999999999986543211111 11222222 346788999998
Q ss_pred CCHHHHHHHHHH
Q 028884 182 DNINQLFEEIAK 193 (202)
Q Consensus 182 ~~i~~~~~~l~~ 193 (202)
.|+.+.|+||.+
T Consensus 155 ~g~~~~~~wl~~ 166 (167)
T cd04161 155 PSIVEGLRWLLA 166 (167)
T ss_pred cCHHHHHHHHhc
Confidence 899999999975
No 115
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.2e-26 Score=165.87 Aligned_cols=154 Identities=21% Similarity=0.357 Sum_probs=117.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..++|+++|.+|+|||||++++..+.+.. ..++.+... ..+... .+.+.+||+||++.+...+..+++.+|+++
T Consensus 14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~--~~~~~~---~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi 87 (174)
T cd04153 14 KEYKVIIVGLDNAGKTTILYQFLLGEVVH-TSPTIGSNV--EEIVYK---NIRFLMWDIGGQESLRSSWNTYYTNTDAVI 87 (174)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC-cCCccccce--EEEEEC---CeEEEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 35899999999999999999999877654 344444433 223322 278999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHH-HH----HHcCCeEEEeccCCCCCHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIE-YA----EKNGMFFIETSAKTADNIN 185 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~----~~~~~~~~~~s~~~~~~i~ 185 (202)
+|+|.+++.++.....++..+... ...+.|+++++||+|+.... ..++... +. +...++++++||++|.|++
T Consensus 88 ~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~ 165 (174)
T cd04153 88 LVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAM--TPAEISESLGLTSIRDHTWHIQGCCALTGEGLP 165 (174)
T ss_pred EEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEecccCCCCCHH
Confidence 999999998888777766665443 33579999999999986522 2222222 21 2344578999999999999
Q ss_pred HHHHHHHH
Q 028884 186 QLFEEIAK 193 (202)
Q Consensus 186 ~~~~~l~~ 193 (202)
++|++|.+
T Consensus 166 e~~~~l~~ 173 (174)
T cd04153 166 EGLDWIAS 173 (174)
T ss_pred HHHHHHhc
Confidence 99999975
No 116
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.95 E-value=2e-26 Score=166.84 Aligned_cols=157 Identities=18% Similarity=0.289 Sum_probs=122.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+..+|+++|++|+|||||++++.++.+. .+.++..... ..+.+.+ +.+.+||+||+..+...+..+++.+|++
T Consensus 17 ~~~~ki~ilG~~~~GKStLi~~l~~~~~~-~~~~T~~~~~--~~i~~~~---~~~~l~D~~G~~~~~~~~~~~~~~ad~i 90 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPTS--EELTIGN---IKFKTFDLGGHEQARRLWKDYFPEVDGI 90 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCc-ccCCccCcce--EEEEECC---EEEEEEECCCCHHHHHHHHHHhccCCEE
Confidence 34789999999999999999999987763 3334433322 2333332 6899999999999988889999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH----------------cCCeE
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK----------------NGMFF 173 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----------------~~~~~ 173 (202)
++|+|.++..++.....|+..+... ...+.|+++++||+|+.+ .+..++....... ..+++
T Consensus 91 ilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (190)
T cd00879 91 VFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRPIEV 168 (190)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCceeEEE
Confidence 9999999998888887787776553 345799999999999854 3445555555432 22458
Q ss_pred EEeccCCCCCHHHHHHHHHHHc
Q 028884 174 IETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i 195 (202)
++|||+++.|+.++|++|.+.+
T Consensus 169 ~~~Sa~~~~gv~e~~~~l~~~~ 190 (190)
T cd00879 169 FMCSVVKRQGYGEAFRWLSQYL 190 (190)
T ss_pred EEeEecCCCChHHHHHHHHhhC
Confidence 9999999999999999998764
No 117
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.95 E-value=1.7e-26 Score=163.86 Aligned_cols=152 Identities=19% Similarity=0.325 Sum_probs=115.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCC------CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFD------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
+|+|+|++|+|||||+++|.+.... ....++..... ..+.+. ...+.+||+||++.+..++..+++.+|
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~--~~~~~~---~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 75 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNI--GTIEVG---NARLKFWDLGGQESLRSLWDKYYAECH 75 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccce--EEEEEC---CEEEEEEECCCChhhHHHHHHHhCCCC
Confidence 6899999999999999999864321 12223333333 223332 278999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-------cCCeEEEeccCC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-------NGMFFIETSAKT 180 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~ 180 (202)
++++|+|++++.++.....|+..+.+. ...+.|+++++||+|+... ....+...+... ...+++++||++
T Consensus 76 ~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 153 (167)
T cd04160 76 AIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPVSALE 153 (167)
T ss_pred EEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEeeCCC
Confidence 999999999998888888887776553 3467999999999997553 223333333322 245799999999
Q ss_pred CCCHHHHHHHHHH
Q 028884 181 ADNINQLFEEIAK 193 (202)
Q Consensus 181 ~~~i~~~~~~l~~ 193 (202)
|.|+++++++|++
T Consensus 154 g~gv~e~~~~l~~ 166 (167)
T cd04160 154 GTGVREGIEWLVE 166 (167)
T ss_pred CcCHHHHHHHHhc
Confidence 9999999999975
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.95 E-value=1.2e-26 Score=163.41 Aligned_cols=152 Identities=22% Similarity=0.364 Sum_probs=115.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
+|+++|++|+|||||+++|.++.+... .++.+... ..+.. +..+.+.+||++|+..+...+..++..+|++++|+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~~t~~~~~--~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~ 75 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-IPTVGFNV--EMLQL--EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVV 75 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-cCccCcce--EEEEe--CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999876433 34433322 22332 22378999999999999888888999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHH------HHHcCCeEEEeccCCCCCHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEY------AEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~------~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
|.+++.++.....|+..+.+. ...+.|+++|+||+|+.... ...+.... +...+++++++||++|.|++++
T Consensus 76 D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~ 153 (160)
T cd04156 76 DSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEA 153 (160)
T ss_pred ECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecccccCCChHHH
Confidence 999999888888887776543 23579999999999985422 12222211 1123456899999999999999
Q ss_pred HHHHHH
Q 028884 188 FEEIAK 193 (202)
Q Consensus 188 ~~~l~~ 193 (202)
|++|.+
T Consensus 154 ~~~i~~ 159 (160)
T cd04156 154 FRKLAS 159 (160)
T ss_pred HHHHhc
Confidence 999864
No 119
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.95 E-value=1.3e-26 Score=163.04 Aligned_cols=151 Identities=23% Similarity=0.383 Sum_probs=117.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
||+++|.+|||||||++++.+... ....++.+... ..+.+. .+.+.+||+||+..+...+..+++.+|++++||
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~~~t~~~~~--~~~~~~---~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~ 74 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTTIPTIGFNV--ETVEYK---NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVV 74 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCCCCCcCcce--EEEEEC---CEEEEEEECCCChhhHHHHHHHhccCCEEEEEE
Confidence 689999999999999999998873 23333333332 233332 278999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCHHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 188 (202)
|++++.++.....|+..+... ...+.|+++|+||+|+.... ..++...... ...++++++|+++|.|+.++|
T Consensus 75 D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~ 152 (158)
T cd00878 75 DSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGL 152 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHH
Confidence 999999999888888776553 34689999999999987543 2222222222 235679999999999999999
Q ss_pred HHHHH
Q 028884 189 EEIAK 193 (202)
Q Consensus 189 ~~l~~ 193 (202)
++|..
T Consensus 153 ~~l~~ 157 (158)
T cd00878 153 DWLLQ 157 (158)
T ss_pred HHHhh
Confidence 99875
No 120
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=5.7e-26 Score=172.81 Aligned_cols=145 Identities=27% Similarity=0.471 Sum_probs=122.6
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecC------------CcEEEEEEEeCCChh
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD------------STTVKFEIWDTAGQE 94 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~D~~G~~ 94 (202)
..+....+||+|+|..|||||||+++|.++.+...+.++++.+...+.+.+.+ +..+.++|||++|++
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqE 94 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHE 94 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCCh
Confidence 55566789999999999999999999999988777788887777666666542 245889999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCC------------CCCeEEEEEeCCCCCCCC---C---
Q 028884 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS------------PDIVMALVGNKADLHEKR---E--- 156 (202)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~------------~~~p~ivv~nK~D~~~~~---~--- 156 (202)
.|+.++..+++.+|++|+|||+++..+++.+..|++.+..... .++|++||+||+|+.+.. .
T Consensus 95 rfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~ 174 (334)
T PLN00023 95 RYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSG 174 (334)
T ss_pred hhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccccccccccc
Confidence 9999999999999999999999999999999999999987531 358999999999986542 1
Q ss_pred CChHHHHHHHHHcCC
Q 028884 157 VPAQDGIEYAEKNGM 171 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~ 171 (202)
+..+++++++.+.++
T Consensus 175 ~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 175 NLVDAARQWVEKQGL 189 (334)
T ss_pred ccHHHHHHHHHHcCC
Confidence 357889999998774
No 121
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.95 E-value=6.2e-26 Score=162.07 Aligned_cols=157 Identities=26% Similarity=0.448 Sum_probs=122.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
++.++|+++|..|+|||||++++..+.... ..|+.+.. ...+.+.+ +.+.+||.+|+..++..|+.+++.+|++
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-~~pT~g~~--~~~i~~~~---~~~~~~d~gG~~~~~~~w~~y~~~~~~i 85 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-TIPTIGFN--IEEIKYKG---YSLTIWDLGGQESFRPLWKSYFQNADGI 85 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-EEEESSEE--EEEEEETT---EEEEEEEESSSGGGGGGGGGGHTTESEE
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-cCcccccc--cceeeeCc---EEEEEEeccccccccccceeecccccee
Confidence 678999999999999999999999765432 34444433 34444433 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH------HcCCeEEEeccCCCCC
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE------KNGMFFIETSAKTADN 183 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~~~~~~~~s~~~~~~ 183 (202)
|||+|.++...+.+..+.+..+... ...++|++|++||+|+... ...++...... ...+.++.||+.+|.|
T Consensus 86 IfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~G 163 (175)
T PF00025_consen 86 IFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEG 163 (175)
T ss_dssp EEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBT
T ss_pred EEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccCCcC
Confidence 9999999998888887777666543 4468999999999997653 33344443322 2345589999999999
Q ss_pred HHHHHHHHHHHc
Q 028884 184 INQLFEEIAKRL 195 (202)
Q Consensus 184 i~~~~~~l~~~i 195 (202)
+.+.++||.+.+
T Consensus 164 v~e~l~WL~~~~ 175 (175)
T PF00025_consen 164 VDEGLEWLIEQI 175 (175)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999999864
No 122
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=7.1e-26 Score=159.32 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=111.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
||+++|.+++|||||++++..+.+.. ..++.+.... .+.. ..+.+++||+||++.+..++..+++.+|++|+|+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~-~~~t~~~~~~--~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~ 74 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT-TIPTIGFNVE--TVTY---KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVV 74 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC-cCCccCcCeE--EEEE---CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEE
Confidence 68999999999999999998776543 2334333322 2222 2378999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHH-HHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCHHHHH
Q 028884 115 DITSPDSFNKAQYWVKEL-QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i~~~~ 188 (202)
|++++.++....+++..+ ......++|+++|+||+|+.+.. ...+...... ..+.+++++||+++.|++++|
T Consensus 75 d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 152 (158)
T cd04151 75 DSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGM 152 (158)
T ss_pred ECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHH
Confidence 999988887765655544 33334579999999999986532 1222221111 123469999999999999999
Q ss_pred HHHHH
Q 028884 189 EEIAK 193 (202)
Q Consensus 189 ~~l~~ 193 (202)
++|++
T Consensus 153 ~~l~~ 157 (158)
T cd04151 153 DWLVN 157 (158)
T ss_pred HHHhc
Confidence 99975
No 123
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.94 E-value=1.2e-25 Score=162.03 Aligned_cols=157 Identities=15% Similarity=0.204 Sum_probs=119.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
++.++|+++|.+|+|||||++++.++.+.. ..++..... ..+... . +.+.+||+||+..++..+..+++.+|++
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~-~~~~~~D~~G~~~~~~~~~~~~~~ad~i 88 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQ-HQPTQHPTS--EELAIG--N-IKFTTFDLGGHQQARRLWKDYFPEVNGI 88 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCcc-cCCccccce--EEEEEC--C-EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 456999999999999999999999876543 233333222 222222 2 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH------------cCCeEEEec
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------------NGMFFIETS 177 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s 177 (202)
|+|+|++++.++.....++..+... ...+.|+++|+||+|+.. ....++....... ....+++||
T Consensus 89 i~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~S 166 (184)
T smart00178 89 VYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVFMCS 166 (184)
T ss_pred EEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEEEee
Confidence 9999999999888887777766543 335789999999999854 2334444433211 133489999
Q ss_pred cCCCCCHHHHHHHHHHHc
Q 028884 178 AKTADNINQLFEEIAKRL 195 (202)
Q Consensus 178 ~~~~~~i~~~~~~l~~~i 195 (202)
|+++.|++++++||.+++
T Consensus 167 a~~~~g~~~~~~wl~~~~ 184 (184)
T smart00178 167 VVRRMGYGEGFKWLSQYI 184 (184)
T ss_pred cccCCChHHHHHHHHhhC
Confidence 999999999999998754
No 124
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.94 E-value=9.8e-26 Score=152.15 Aligned_cols=163 Identities=20% Similarity=0.272 Sum_probs=127.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
++++++|+++|..|+||||++++|.+... ....| +..+..+...+.+ +.+.+||.+|+...+..|+.|+..+|+
T Consensus 13 kerE~riLiLGLdNsGKTti~~kl~~~~~-~~i~p--t~gf~Iktl~~~~---~~L~iwDvGGq~~lr~~W~nYfestdg 86 (185)
T KOG0073|consen 13 KEREVRILILGLDNSGKTTIVKKLLGEDT-DTISP--TLGFQIKTLEYKG---YTLNIWDVGGQKTLRSYWKNYFESTDG 86 (185)
T ss_pred hhheeEEEEEecCCCCchhHHHHhcCCCc-cccCC--ccceeeEEEEecc---eEEEEEEcCCcchhHHHHHHhhhccCe
Confidence 34589999999999999999999998552 22233 3444445555444 789999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCC---CCCh-HHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKR---EVPA-QDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~---~~~~-~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
+|+|+|.+++..+++....+..+.. ....+.|++|++||.|+...- ++.. -+..++++.+.++++-||+.+|+++
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~tge~l 166 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVTGEDL 166 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhCHHHhccccCceEEEEeccccccH
Confidence 9999999999888887666665433 344578999999999987431 1111 1233455778899999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028884 185 NQLFEEIAKRLPRP 198 (202)
Q Consensus 185 ~~~~~~l~~~i~~~ 198 (202)
.+.++||++.+.++
T Consensus 167 ~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 167 LEGIDWLCDDLMSR 180 (185)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988764
No 125
>PTZ00099 rab6; Provisional
Probab=99.94 E-value=3.9e-25 Score=157.79 Aligned_cols=141 Identities=43% Similarity=0.766 Sum_probs=122.9
Q ss_pred CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcC
Q 028884 57 QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG 136 (202)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 136 (202)
.+...+.++.+.++..+.+.+.+ ..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+....
T Consensus 4 ~F~~~~~~Tig~~~~~~~~~~~~-~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~ 82 (176)
T PTZ00099 4 TFDNNYQSTIGIDFLSKTLYLDE-GPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER 82 (176)
T ss_pred CcCCCCCCccceEEEEEEEEECC-EEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc
Confidence 45566778888777666666654 45999999999999999999999999999999999999999999999999887665
Q ss_pred CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 137 SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 137 ~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
.+++|++||+||+|+.+...+...++..++...++.++++||++|.|+.++|++|++.+.+.
T Consensus 83 ~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 83 GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CCCCeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 56799999999999976666777888888888899999999999999999999999998653
No 126
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.94 E-value=9.9e-28 Score=164.18 Aligned_cols=172 Identities=31% Similarity=0.499 Sum_probs=156.6
Q ss_pred CCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc
Q 028884 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY 104 (202)
Q Consensus 25 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 104 (202)
+...+.+..++++|+|..++||||+|.+|+.+-+...+..+++.++....+.+.... +++.+||+.|++++......|+
T Consensus 12 m~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Ed-vr~mlWdtagqeEfDaItkAyy 90 (246)
T KOG4252|consen 12 MDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIED-VRSMLWDTAGQEEFDAITKAYY 90 (246)
T ss_pred CCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHH-HHHHHHHhccchhHHHHHHHHh
Confidence 445566789999999999999999999999999999999999988877777665555 7889999999999999999999
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
+++.+.++||+.++..||+....|++.+...+ ..+|.++|-||+|+.+...+...+...+++.+++++|.+|+++..|+
T Consensus 91 rgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~-~~IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvked~NV 169 (246)
T KOG4252|consen 91 RGAQASVLVFSTTDRYSFEATLEWYNKVQKET-ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKEDFNV 169 (246)
T ss_pred ccccceEEEEecccHHHHHHHHHHHHHHHHHh-ccCCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999998874 46999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028884 185 NQLFEEIAKRLPRP 198 (202)
Q Consensus 185 ~~~~~~l~~~i~~~ 198 (202)
...|.+|++.+.+.
T Consensus 170 ~~vF~YLaeK~~q~ 183 (246)
T KOG4252|consen 170 MHVFAYLAEKLTQQ 183 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887543
No 127
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=3.5e-25 Score=158.76 Aligned_cols=158 Identities=21% Similarity=0.255 Sum_probs=112.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC--C-----CCCCcc------ccceeEEEEE--EEec--CCcEEEEEEEeCCChhhhh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ--F-----DPTSKV------TVGASFLSQT--IALQ--DSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~--~-----~~~~~~------~~~~~~~~~~--~~~~--~~~~~~~~i~D~~G~~~~~ 97 (202)
+|+++|++++|||||+++|++.. + ...+.+ +.+....... ..+. ++..+.+.+|||||++.+.
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 81 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDFS 81 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhhH
Confidence 68999999999999999998742 1 111111 1112222211 1121 3445889999999999999
Q ss_pred hcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC---eEE
Q 028884 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM---FFI 174 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~ 174 (202)
..+..+++.+|++|+|+|++++.++.....|.... ..++|+++|+||+|+.+.. ......+++...++ .++
T Consensus 82 ~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~----~~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~ 155 (179)
T cd01890 82 YEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL----ENNLEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAI 155 (179)
T ss_pred HHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH----HcCCCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEE
Confidence 88889999999999999999876666665554332 2368899999999985422 12223345555555 389
Q ss_pred EeccCCCCCHHHHHHHHHHHcCCC
Q 028884 175 ETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 175 ~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
++||++|.|++++|++|.+.+..|
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 156 LVSAKTGLGVEDLLEAIVERIPPP 179 (179)
T ss_pred EeeccCCCCHHHHHHHHHhhCCCC
Confidence 999999999999999999987653
No 128
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.94 E-value=2.8e-25 Score=162.59 Aligned_cols=157 Identities=24% Similarity=0.249 Sum_probs=114.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAP 101 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~ 101 (202)
+..++|+|+|++|||||||++++.+........+..+.......+.+.+. ..+.+||+||.. .+...+
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~~~- 115 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLPDG--REVLLTDTVGFIRDLPHQLVEAFRSTL- 115 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCCccceeccceeEEEEecCC--ceEEEeCCCccccCCCHHHHHHHHHHH-
Confidence 45689999999999999999999997643333222233333333443332 379999999972 222222
Q ss_pred ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
..+..+|++++|+|++++.++.....|...+......+.|+++|+||+|+.+..... ........+++++|++++
T Consensus 116 ~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~~-----~~~~~~~~~~~~~Sa~~~ 190 (204)
T cd01878 116 EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEELE-----ERLEAGRPDAVFISAKTG 190 (204)
T ss_pred HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHHHH-----HHhhcCCCceEEEEcCCC
Confidence 235679999999999998888777777777776655678999999999986543221 334456678999999999
Q ss_pred CCHHHHHHHHHHHc
Q 028884 182 DNINQLFEEIAKRL 195 (202)
Q Consensus 182 ~~i~~~~~~l~~~i 195 (202)
.|+++++++|...+
T Consensus 191 ~gi~~l~~~L~~~~ 204 (204)
T cd01878 191 EGLDELLEAIEELL 204 (204)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998764
No 129
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.94 E-value=3.2e-25 Score=157.37 Aligned_cols=157 Identities=17% Similarity=0.184 Sum_probs=107.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh---------cccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA---------LAPLYY 104 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---------~~~~~~ 104 (202)
.+|+++|.+|+|||||+++|.+..+.....+..+.......+.. ..+.+.+|||||...... ......
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 77 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY---KYLRWQVIDTPGLLDRPLEERNTIEMQAITALA 77 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc---CceEEEEEECCCcCCccccCCchHHHHHHHHHH
Confidence 37999999999999999999997754322222222222222222 237899999999742110 011112
Q ss_pred cCccEEEEEEeCCChhH--HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 105 RGAAVAVVVYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
..+|++|+|+|+++..+ ++....|+..+.... .+.|+++|+||+|+.+...... ...+......+++++||++|.
T Consensus 78 ~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~-~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~ 154 (168)
T cd01897 78 HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF-KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE 154 (168)
T ss_pred hccCcEEEEEeCCcccccchHHHHHHHHHHHhhc-CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence 23689999999998754 355567777776542 4789999999999865443322 444555567789999999999
Q ss_pred CHHHHHHHHHHHcC
Q 028884 183 NINQLFEEIAKRLP 196 (202)
Q Consensus 183 ~i~~~~~~l~~~i~ 196 (202)
|++++|++|.+.+.
T Consensus 155 gi~~l~~~l~~~~~ 168 (168)
T cd01897 155 GVDEVKNKACELLL 168 (168)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999998763
No 130
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=9.4e-25 Score=153.04 Aligned_cols=152 Identities=25% Similarity=0.390 Sum_probs=117.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
.|+++|++|+|||||++++.+..+.....++.+..... +.. +. +.+.+||+||++.+...+..+++.+|++++|+
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~--~~~--~~-~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~ 75 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK--VTK--GN-VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVV 75 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE--EEE--CC-EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEE
Confidence 37999999999999999999998877776666554432 222 23 78999999999999999999999999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-----HHcCCeEEEeccCCCCCHHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
|+++..++.....|+..+... ...++|+++|+||.|+.+... ..+..... .....+++++|++++.|+++++
T Consensus 76 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 153 (159)
T cd04159 76 DAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNLKSITDREVSCYSISCKEKTNIDIVL 153 (159)
T ss_pred ECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCcccccCCceEEEEEEeccCCChHHHH
Confidence 999998888877776665432 335789999999999765432 11221111 1223578999999999999999
Q ss_pred HHHHH
Q 028884 189 EEIAK 193 (202)
Q Consensus 189 ~~l~~ 193 (202)
++|.+
T Consensus 154 ~~l~~ 158 (159)
T cd04159 154 DWLIK 158 (159)
T ss_pred HHHhh
Confidence 99875
No 131
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.93 E-value=6.1e-25 Score=156.20 Aligned_cols=158 Identities=18% Similarity=0.150 Sum_probs=109.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhcccc---cccCc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPL---YYRGA 107 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~---~~~~~ 107 (202)
+|+++|.+|+|||||+++|.+........+..+.......+.+.+. ..+.+|||||... ...+... .+..+
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDDG--RSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcCCC--CeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 6899999999999999999975532111111111111122222221 4799999999632 1112222 24469
Q ss_pred cEEEEEEeCCCh-hHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-cCCeEEEeccCCCCC
Q 028884 108 AVAVVVYDITSP-DSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADN 183 (202)
Q Consensus 108 d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~ 183 (202)
|++++|+|++++ .+++.+..|++.+.... ..++|+++|+||+|+.+.... ......+... ...+++++|++++.|
T Consensus 80 d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~g 158 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGEG 158 (170)
T ss_pred CEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCCC
Confidence 999999999998 78888888888876653 246899999999998665443 2334444444 367899999999999
Q ss_pred HHHHHHHHHHHc
Q 028884 184 INQLFEEIAKRL 195 (202)
Q Consensus 184 i~~~~~~l~~~i 195 (202)
++++|++|.+.+
T Consensus 159 i~~l~~~i~~~~ 170 (170)
T cd01898 159 LDELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHhhC
Confidence 999999998753
No 132
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.93 E-value=1.3e-24 Score=168.82 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=119.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhccccccc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYR 105 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 105 (202)
...|.++|.|++|||||++++.+........+..+.....-.+.+.++ ..+.+||+||..+ ....+..+++
T Consensus 158 ~adVglVG~PNaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~~~--~~~~i~D~PGli~ga~~~~gLg~~flrhie 235 (335)
T PRK12299 158 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVDDY--KSFVIADIPGLIEGASEGAGLGHRFLKHIE 235 (335)
T ss_pred cCCEEEEcCCCCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeCCC--cEEEEEeCCCccCCCCccccHHHHHHHHhh
Confidence 456899999999999999999986533222222233333333333222 4799999999632 2223334566
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
.++++|+|+|+++.++++.+..|+..+..... .++|+++|+||+|+.............++...+.+++++||+++.|
T Consensus 236 ~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~G 315 (335)
T PRK12299 236 RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEG 315 (335)
T ss_pred hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCC
Confidence 79999999999987788888889888876532 4789999999999876544433344445555667899999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 028884 184 INQLFEEIAKRLPRPS 199 (202)
Q Consensus 184 i~~~~~~l~~~i~~~~ 199 (202)
+++++++|.+.+.+.+
T Consensus 316 I~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 316 LDELLRALWELLEEAR 331 (335)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999886543
No 133
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.93 E-value=6.8e-24 Score=141.73 Aligned_cols=173 Identities=24% Similarity=0.393 Sum_probs=142.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccc-eeEEEEEEEecCCcEEEEEEEeCCChhhh-hhcccccccCc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVG-ASFLSQTIALQDSTTVKFEIWDTAGQERY-AALAPLYYRGA 107 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-~~~~~~~~~~~ 107 (202)
....-+|+|+|..++|||+++++|..+..........+ .++....+..+.+..-.+.++||.|...+ ..+-++|+.-+
T Consensus 6 mGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~a 85 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQFA 85 (198)
T ss_pred hCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhccC
Confidence 34578999999999999999999998765444332222 24445556666666568999999998777 56778899999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
|++++||+..+++||+.+.-.-..|.+. ....+|++|++||+|+.++..+..+.+..|++...++++++++.+...+-+
T Consensus 86 DafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~e 165 (198)
T KOG3883|consen 86 DAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYE 165 (198)
T ss_pred ceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhh
Confidence 9999999999999998875555555554 456799999999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCC
Q 028884 187 LFEEIAKRLPRPSPSS 202 (202)
Q Consensus 187 ~~~~l~~~i~~~~~~~ 202 (202)
.|.+|..++..+..+|
T Consensus 166 pf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 166 PFTYLASRLHQPQSKS 181 (198)
T ss_pred HHHHHHHhccCCcccc
Confidence 9999999999887654
No 134
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.93 E-value=8.4e-24 Score=150.82 Aligned_cols=156 Identities=19% Similarity=0.276 Sum_probs=113.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+++|++|+|||||++++.+..+.. ..++.+.. ...+...+ ..+.+||++|+..+...+..+++.+|+
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~~~~~-~~~t~g~~--~~~i~~~~---~~~~~~D~~G~~~~~~~~~~~~~~~~~ 84 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASEDISH-ITPTQGFN--IKTVQSDG---FKLNVWDIGGQRAIRPYWRNYFENTDC 84 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcCCCcc-cCCCCCcc--eEEEEECC---EEEEEEECCCCHHHHHHHHHHhcCCCE
Confidence 3457999999999999999999999875532 23333322 22233322 689999999999888888888999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-----CCeEEEeccCCCCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMFFIETSAKTADN 183 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~~~~~s~~~~~~ 183 (202)
+++|+|.++..++.....++..+... ...++|+++++||+|+.+... ..+........ ..+++++||++|.|
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~g 162 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNLHDLRDRTWHIQACSAKTGEG 162 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCCcccCCCeEEEEEeECCCCCC
Confidence 99999999988888777666655433 335799999999999765322 22222211111 12478999999999
Q ss_pred HHHHHHHHHH
Q 028884 184 INQLFEEIAK 193 (202)
Q Consensus 184 i~~~~~~l~~ 193 (202)
++++|++|++
T Consensus 163 i~~~~~~l~~ 172 (173)
T cd04155 163 LQEGMNWVCK 172 (173)
T ss_pred HHHHHHHHhc
Confidence 9999999975
No 135
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.92 E-value=5.6e-24 Score=150.20 Aligned_cols=155 Identities=15% Similarity=0.120 Sum_probs=103.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
..|+++|.+|+|||||+++|.+.. +.....+..+.......+.+.++ ..+.+|||||++.+......++..+|++
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~DtpG~~~~~~~~~~~~~~ad~i 78 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSG--KRLGFIDVPGHEKFIKNMLAGAGGIDLV 78 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCC--cEEEEEECCChHHHHHHHHhhhhcCCEE
Confidence 368999999999999999999643 22222223333333333443322 5799999999998877677778899999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--CChHHHHHHHHH---cCCeEEEeccCCCCCHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEK---NGMFFIETSAKTADNIN 185 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~---~~~~~~~~s~~~~~~i~ 185 (202)
++|+|+++... .....++..+.... ..|+++++||+|+.+... ....+..+.... .+.+++++|++++.|++
T Consensus 79 i~V~d~~~~~~-~~~~~~~~~~~~~~--~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 155 (164)
T cd04171 79 LLVVAADEGIM-PQTREHLEILELLG--IKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIE 155 (164)
T ss_pred EEEEECCCCcc-HhHHHHHHHHHHhC--CCcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHH
Confidence 99999987321 11122222222221 248999999999865321 112233333333 45789999999999999
Q ss_pred HHHHHHHH
Q 028884 186 QLFEEIAK 193 (202)
Q Consensus 186 ~~~~~l~~ 193 (202)
++++.+.+
T Consensus 156 ~l~~~l~~ 163 (164)
T cd04171 156 ELKEYLDE 163 (164)
T ss_pred HHHHHHhh
Confidence 99998864
No 136
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.92 E-value=6.9e-24 Score=150.42 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=109.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
.|+|+|.+|+|||||+++|..+.+........+.......+.........+.+|||||+..+..++..++..+|++++|+
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~ 81 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILVV 81 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEE
Confidence 48999999999999999999987665544334433333333332112368999999999999888888889999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHH-HHHHHH------HcCCeEEEeccCCCCCHHHH
Q 028884 115 DITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD-GIEYAE------KNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~------~~~~~~~~~s~~~~~~i~~~ 187 (202)
|++++..... ...+..+.. .++|+++|+||+|+.......... ...+.. ....+++++|++++.|+.++
T Consensus 82 d~~~~~~~~~-~~~~~~~~~---~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (168)
T cd01887 82 AADDGVMPQT-IEAIKLAKA---ANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTGEGIDDL 157 (168)
T ss_pred ECCCCccHHH-HHHHHHHHH---cCCCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEeecccCCCHHHH
Confidence 9998532221 222223332 468899999999986432111111 111111 12357999999999999999
Q ss_pred HHHHHHHcCC
Q 028884 188 FEEIAKRLPR 197 (202)
Q Consensus 188 ~~~l~~~i~~ 197 (202)
+++|.+...+
T Consensus 158 ~~~l~~~~~~ 167 (168)
T cd01887 158 LEAILLLAEK 167 (168)
T ss_pred HHHHHHhhhc
Confidence 9999887543
No 137
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.92 E-value=1.7e-23 Score=146.32 Aligned_cols=158 Identities=32% Similarity=0.506 Sum_probs=121.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+++|.+|+|||||++++........+.++.+.......+... +..+.+.+||+||+..+..++..+.+.++.+++
T Consensus 1 ~~ki~~~G~~~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-GKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-CEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 3799999999999999999999988665666666666655445443 333789999999999888888888889999999
Q ss_pred EEeCCCh-hHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 113 VYDITSP-DSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 113 v~d~~~~-~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|.... .++.... .|+..+......+.|+++++||+|+.... ........+......+++++||+++.|+.+++++
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~ 158 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKI 158 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHHHHHHH
Confidence 9998876 5565543 66666665543388999999999986543 3333333444445667999999999999999998
Q ss_pred HH
Q 028884 191 IA 192 (202)
Q Consensus 191 l~ 192 (202)
|.
T Consensus 159 l~ 160 (161)
T TIGR00231 159 VE 160 (161)
T ss_pred hh
Confidence 64
No 138
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.92 E-value=2.2e-23 Score=163.10 Aligned_cols=155 Identities=25% Similarity=0.254 Sum_probs=113.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhcccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAALAPL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~ 102 (202)
..++|+++|.+|+|||||+|+|.+........+..+.+.....+.++++ ..+.+|||+|. +.|...+.
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~~--~~i~l~DT~G~~~~l~~~lie~f~~tle- 264 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPDG--GEVLLTDTVGFIRDLPHELVAAFRATLE- 264 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCCC--ceEEEEecCcccccCCHHHHHHHHHHHH-
Confidence 4589999999999999999999997643333333444555555666443 37899999997 23333332
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
.+..+|++++|+|++++.+++.+..|...+......++|+++|+||+|+..... .... .....+++.+||++|.
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~ 338 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGE 338 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCC
Confidence 477899999999999988777777776666665555789999999999864321 1111 1223458999999999
Q ss_pred CHHHHHHHHHHHc
Q 028884 183 NINQLFEEIAKRL 195 (202)
Q Consensus 183 ~i~~~~~~l~~~i 195 (202)
|+++++++|.+.+
T Consensus 339 GI~eL~~~I~~~~ 351 (351)
T TIGR03156 339 GLDLLLEAIAERL 351 (351)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 139
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.91 E-value=2.1e-23 Score=158.67 Aligned_cols=157 Identities=22% Similarity=0.150 Sum_probs=108.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhcccccccC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLYYRG 106 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~~~~ 106 (202)
+|+++|.+|+|||||+|+|.+...........++......+...++ ..+.+|||||.... ......++..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~--~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~ 79 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA--SQIIFIDTPGFHEKKHSLNRLMMKEARSAIGG 79 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC--cEEEEEECcCCCCCcchHHHHHHHHHHHHHhh
Confidence 6899999999999999999998765444333333222223332233 46899999996431 1123456788
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCHH
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNIN 185 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~ 185 (202)
+|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+..... .......++..... +++++||++|.|++
T Consensus 80 aDvvl~VvD~~~~~~~~--~~i~~~l~~---~~~p~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 80 VDLILFVVDSDQWNGDG--EFVLTKLQN---LKRPVVLTRNKLDNKFKDK-LLPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred CCEEEEEEECCCCCchH--HHHHHHHHh---cCCCEEEEEECeeCCCHHH-HHHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 99999999999875553 334444443 3689999999999864322 22333344444443 79999999999999
Q ss_pred HHHHHHHHHcCCCC
Q 028884 186 QLFEEIAKRLPRPS 199 (202)
Q Consensus 186 ~~~~~l~~~i~~~~ 199 (202)
+++++|.+.+.+..
T Consensus 154 ~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 154 FLAAFIEVHLPEGP 167 (270)
T ss_pred HHHHHHHHhCCCCC
Confidence 99999999987654
No 140
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.91 E-value=4.9e-24 Score=147.31 Aligned_cols=134 Identities=22% Similarity=0.241 Sum_probs=97.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-----hhhhcccccccCccE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-----RYAALAPLYYRGAAV 109 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-----~~~~~~~~~~~~~d~ 109 (202)
||+++|++|+|||||+++|.+..+. +.++.+ +. +.-.+||+||.. .+..+.. .++++|+
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~--~~~t~~-------~~------~~~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~ 65 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL--YKKTQA-------VE------YNDGAIDTPGEYVENRRLYSALIV-TAADADV 65 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc--ccccee-------EE------EcCeeecCchhhhhhHHHHHHHHH-HhhcCCE
Confidence 7999999999999999999986542 111111 11 112689999972 3444433 4789999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQLF 188 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~~~ 188 (202)
+|+|||++++.++.. ..|...+ ..|+++|+||+|+.+. ....++..++++..+. +++++||+++.|++++|
T Consensus 66 vilv~d~~~~~s~~~-~~~~~~~------~~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 137 (142)
T TIGR02528 66 IALVQSATDPESRFP-PGFASIF------VKPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEALV 137 (142)
T ss_pred EEEEecCCCCCcCCC-hhHHHhc------cCCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHH
Confidence 999999999987654 3343321 2489999999998653 3445566677777665 79999999999999999
Q ss_pred HHHH
Q 028884 189 EEIA 192 (202)
Q Consensus 189 ~~l~ 192 (202)
++|.
T Consensus 138 ~~l~ 141 (142)
T TIGR02528 138 DYLN 141 (142)
T ss_pred HHHh
Confidence 9875
No 141
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=9.3e-24 Score=146.06 Aligned_cols=164 Identities=17% Similarity=0.306 Sum_probs=130.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 106 (202)
......+.+|+++|..++||||++.+|..++.... -|+++... ..+.+.+ +.+++||..|+++++..|+.|+++
T Consensus 11 ~~~~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-vPTiGfnV--E~v~ykn---~~f~vWDvGGq~k~R~lW~~Y~~~ 84 (181)
T KOG0070|consen 11 GLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-VPTIGFNV--ETVEYKN---ISFTVWDVGGQEKLRPLWKHYFQN 84 (181)
T ss_pred hccCcceEEEEEEeccCCCceeeeEeeccCCcccC-CCccccce--eEEEEcc---eEEEEEecCCCcccccchhhhccC
Confidence 34556789999999999999999999998776444 55555544 4455544 789999999999999999999999
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCC
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKT 180 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~ 180 (202)
.+++|||+|.++++.+.+.+..+..+.... ....|+++++||.|++..-. ..+...... .....+..|+|.+
T Consensus 85 t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als--~~ei~~~L~l~~l~~~~w~iq~~~a~~ 162 (181)
T KOG0070|consen 85 TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS--AAEITNKLGLHSLRSRNWHIQSTCAIS 162 (181)
T ss_pred CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC--HHHHHhHhhhhccCCCCcEEeeccccc
Confidence 999999999999999988888777776653 36899999999999876432 222222222 2344577899999
Q ss_pred CCCHHHHHHHHHHHcCCC
Q 028884 181 ADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 181 ~~~i~~~~~~l~~~i~~~ 198 (202)
|+|+.+.+++|.+.+..+
T Consensus 163 G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 163 GEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred cccHHHHHHHHHHHHhcc
Confidence 999999999999988764
No 142
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.91 E-value=1.1e-22 Score=150.48 Aligned_cols=164 Identities=38% Similarity=0.575 Sum_probs=131.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.++|+|+|+.|+|||||+++|.++.+...+.++.+..+.......... .+.+.+||++|+++++.++..+..+++++++
T Consensus 5 ~~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~ 83 (219)
T COG1100 5 EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-NIKLQLWDTAGQEEYRSLRPEYYRGANGILI 83 (219)
T ss_pred eEEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCC-EEEEEeecCCCHHHHHHHHHHHhcCCCEEEE
Confidence 499999999999999999999999998888887777665655554433 5889999999999999999999999999999
Q ss_pred EEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC------------CChHHHHHHHHHc---CCeEEEe
Q 028884 113 VYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE------------VPAQDGIEYAEKN---GMFFIET 176 (202)
Q Consensus 113 v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~------------~~~~~~~~~~~~~---~~~~~~~ 176 (202)
|+|..+. .+++....|+..+......+.|+++++||+|+..... ............. ...++++
T Consensus 84 ~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (219)
T COG1100 84 VYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANPALLET 163 (219)
T ss_pred EEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhcccceeEe
Confidence 9999994 5556668999998887656799999999999976532 2222222222222 2338999
Q ss_pred ccC--CCCCHHHHHHHHHHHcCC
Q 028884 177 SAK--TADNINQLFEEIAKRLPR 197 (202)
Q Consensus 177 s~~--~~~~i~~~~~~l~~~i~~ 197 (202)
|++ .+.++.++|..+...+..
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~ 186 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLE 186 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHH
Confidence 999 999999999999888754
No 143
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.91 E-value=9.1e-23 Score=141.41 Aligned_cols=154 Identities=43% Similarity=0.751 Sum_probs=116.8
Q ss_pred EEcCCCCcHHHHHHHHHhCCC-CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeC
Q 028884 38 LLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDI 116 (202)
Q Consensus 38 v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 116 (202)
|+|++|+|||||++++.+... .....++. ........... .....+.+||+||...+...+..+++.+|++++|+|.
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~-~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~ 78 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD-GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDV 78 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC-CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEEC
Confidence 589999999999999998776 33333333 44444444433 2337899999999998888778889999999999999
Q ss_pred CChhHHHHHHHHH-HHHHHcCCCCCeEEEEEeCCCCCCCCCCChHH-HHHHHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 117 TSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHEKREVPAQD-GIEYAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 117 ~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
+++.++.....|+ .........+.|+++++||+|+.......... ..........+++++|+.++.|+.+++++|.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 157 (157)
T cd00882 79 TDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELAE 157 (157)
T ss_pred cCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHhC
Confidence 9998888887762 33333456789999999999987654433322 34455566788999999999999999999863
No 144
>PRK04213 GTP-binding protein; Provisional
Probab=99.91 E-value=8.6e-24 Score=154.38 Aligned_cols=155 Identities=26% Similarity=0.224 Sum_probs=104.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhhhhhcc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG-----------QERYAALA 100 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~ 100 (202)
..++|+++|.+|+|||||+++|.+..+.....++.+ .....+... .+.+||||| .+.++..+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~~~~~~~~t--~~~~~~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVRVGKRPGVT--RKPNHYDWG-----DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCcee--eCceEEeec-----ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 468999999999999999999998775433333332 222222221 589999999 45666655
Q ss_pred ccccc----CccEEEEEEeCCChhHH-H---------HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHH
Q 028884 101 PLYYR----GAAVAVVVYDITSPDSF-N---------KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA 166 (202)
Q Consensus 101 ~~~~~----~~d~~i~v~d~~~~~s~-~---------~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~ 166 (202)
..++. .++++++|+|.+....+ . .....+..+. ..++|+++|+||+|+.+.. .+...+++
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~p~iiv~NK~Dl~~~~---~~~~~~~~ 154 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLR---ELGIPPIVAVNKMDKIKNR---DEVLDEIA 154 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHH---HcCCCeEEEEECccccCcH---HHHHHHHH
Confidence 55543 45788899998653211 0 0011122222 2478999999999986533 23444555
Q ss_pred HHcCC---------eEEEeccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 167 EKNGM---------FFIETSAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 167 ~~~~~---------~~~~~s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
..++. +++++||++| |+++++++|.+.+.+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~~~ 196 (201)
T PRK04213 155 ERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEAKR 196 (201)
T ss_pred HHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCccc
Confidence 55554 4799999999 999999999999877553
No 145
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.91 E-value=4.5e-23 Score=149.78 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=107.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh--CCCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR--GQFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL 99 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~ 99 (202)
-+|+++|.+++|||||+++|+. +.+.... ..+.+.........+..+. +.+.+|||||++.|...
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~-~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKD-TKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECC-EEEEEEECCCcHHHHHH
Confidence 4899999999999999999997 4433221 1112222222222232233 78999999999999999
Q ss_pred ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC-CChHHHHHHHH-------HcCC
Q 028884 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VPAQDGIEYAE-------KNGM 171 (202)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~-------~~~~ 171 (202)
+..+++.+|++++|+|+++.. +.....++..+.. .++|+++|+||+|+..... ...++...+.. ..++
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~~~~~~~~~~---~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALE---LGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHHHHHHHHHHH---cCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCcc
Confidence 999999999999999998742 2233334444332 3688999999999865322 12233344432 2367
Q ss_pred eEEEeccCCCCC----------HHHHHHHHHHHcCCC
Q 028884 172 FFIETSAKTADN----------INQLFEEIAKRLPRP 198 (202)
Q Consensus 172 ~~~~~s~~~~~~----------i~~~~~~l~~~i~~~ 198 (202)
+++++|+++|.| +.++++.|.++++.|
T Consensus 158 ~iv~~Sa~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 158 PVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred CEEEeehhccccccccccchhhHHHHHHHHHhcCCCC
Confidence 899999999965 456666666666543
No 146
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.91 E-value=6.6e-23 Score=143.93 Aligned_cols=149 Identities=22% Similarity=0.229 Sum_probs=107.4
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh------cccccc--cCccE
Q 028884 38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA------LAPLYY--RGAAV 109 (202)
Q Consensus 38 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~--~~~d~ 109 (202)
|+|.+|+|||||++++.+........+..+.......+.+.+ ..+.+|||||...+.. ++..++ +.+|+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG---KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCcccccCCCCcccccceEEEeeCC---eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 589999999999999998764433344444444444455443 5799999999876543 234444 48999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|+|.+++.... .++..+.. .++|+++|+||+|+.+...... ....+....+.+++++|++++.|++++++
T Consensus 78 vi~v~d~~~~~~~~---~~~~~~~~---~~~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~~~~l~~ 150 (158)
T cd01879 78 IVNVVDATNLERNL---YLTLQLLE---LGLPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEGIDELKD 150 (158)
T ss_pred EEEEeeCCcchhHH---HHHHHHHH---cCCCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCCHHHHHH
Confidence 99999999864322 33333332 3689999999999876543332 34566677788999999999999999999
Q ss_pred HHHHHcC
Q 028884 190 EIAKRLP 196 (202)
Q Consensus 190 ~l~~~i~ 196 (202)
+|.+.+.
T Consensus 151 ~l~~~~~ 157 (158)
T cd01879 151 AIAELAE 157 (158)
T ss_pred HHHHHhc
Confidence 9988653
No 147
>PRK15494 era GTPase Era; Provisional
Probab=99.91 E-value=2.4e-22 Score=157.00 Aligned_cols=159 Identities=21% Similarity=0.310 Sum_probs=108.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhc-------c
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQER-YAAL-------A 100 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~-------~ 100 (202)
+++.++|+++|.+|+|||||+|+|.+..+....... .+.......+...+ ..+.+|||||... +..+ .
T Consensus 49 ~~k~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~---~qi~~~DTpG~~~~~~~l~~~~~r~~ 125 (339)
T PRK15494 49 NQKTVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD---TQVILYDTPGIFEPKGSLEKAMVRCA 125 (339)
T ss_pred ccceeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC---eEEEEEECCCcCCCcccHHHHHHHHH
Confidence 456789999999999999999999998764322211 12222222333322 4789999999742 1111 1
Q ss_pred cccccCccEEEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC--CeEEEec
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETS 177 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s 177 (202)
...+..+|++++|+|..+. +... ..|+..+... +.|.++|+||+|+.+. ...+..+++.... ..++++|
T Consensus 126 ~~~l~~aDvil~VvD~~~s--~~~~~~~il~~l~~~---~~p~IlViNKiDl~~~---~~~~~~~~l~~~~~~~~i~~iS 197 (339)
T PRK15494 126 WSSLHSADLVLLIIDSLKS--FDDITHNILDKLRSL---NIVPIFLLNKIDIESK---YLNDIKAFLTENHPDSLLFPIS 197 (339)
T ss_pred HHHhhhCCEEEEEEECCCC--CCHHHHHHHHHHHhc---CCCEEEEEEhhcCccc---cHHHHHHHHHhcCCCcEEEEEe
Confidence 2246789999999998764 4344 3455555433 4677889999998643 2344555555443 5799999
Q ss_pred cCCCCCHHHHHHHHHHHcCCCC
Q 028884 178 AKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 178 ~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
|++|.|++++|++|.+.+.+..
T Consensus 198 Aktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 198 ALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred ccCccCHHHHHHHHHHhCCCCC
Confidence 9999999999999999887653
No 148
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.90 E-value=9.7e-23 Score=158.19 Aligned_cols=160 Identities=20% Similarity=0.140 Sum_probs=112.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhccccccc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYR 105 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 105 (202)
...|+++|.+++|||||+++|..........+..+.......+.+.+ ...+.+||+||..+ ....+...+.
T Consensus 157 ~adV~lvG~pnaGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~--~~~~~i~D~PGli~~a~~~~gLg~~flrhie 234 (329)
T TIGR02729 157 LADVGLVGLPNAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD--GRSFVIADIPGLIEGASEGAGLGHRFLKHIE 234 (329)
T ss_pred cccEEEEcCCCCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC--ceEEEEEeCCCcccCCcccccHHHHHHHHHH
Confidence 46789999999999999999998653222222222222222333322 25789999999642 1222233455
Q ss_pred CccEEEEEEeCCCh---hHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC
Q 028884 106 GAAVAVVVYDITSP---DSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (202)
Q Consensus 106 ~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 180 (202)
.+|++|+|+|+++. ++++.+..|.+.+.... ..+.|++||+||+|+..... ..+....++...+.+++++||++
T Consensus 235 rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAkt 313 (329)
T TIGR02729 235 RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALT 313 (329)
T ss_pred hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccC
Confidence 79999999999976 56777777877765542 24789999999999865432 23334445556677899999999
Q ss_pred CCCHHHHHHHHHHHc
Q 028884 181 ADNINQLFEEIAKRL 195 (202)
Q Consensus 181 ~~~i~~~~~~l~~~i 195 (202)
+.|+++++++|.+.+
T Consensus 314 g~GI~eL~~~I~~~l 328 (329)
T TIGR02729 314 GEGLDELLYALAELL 328 (329)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998865
No 149
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.90 E-value=2.7e-23 Score=143.70 Aligned_cols=148 Identities=24% Similarity=0.305 Sum_probs=104.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh------hhhcccccc--c
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER------YAALAPLYY--R 105 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~~~--~ 105 (202)
++|+++|.||+|||||+|+|++........+..+.+.....+.+.+ ..+.++|+||.-. -......++ .
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~---~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD---QQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT---EEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC---ceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 6899999999999999999999875544456666666555566544 5899999999311 122223333 5
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHH
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 185 (202)
..|++|+|+|+++. ++-......+... ++|+++++||+|..+..... .+...+.+.++++++.+||++++|++
T Consensus 78 ~~D~ii~VvDa~~l---~r~l~l~~ql~e~---g~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~ 150 (156)
T PF02421_consen 78 KPDLIIVVVDATNL---ERNLYLTLQLLEL---GIPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGID 150 (156)
T ss_dssp SSSEEEEEEEGGGH---HHHHHHHHHHHHT---TSSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHH
T ss_pred CCCEEEEECCCCCH---HHHHHHHHHHHHc---CCCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHH
Confidence 78999999999874 3323333444443 79999999999976654432 34677788899999999999999999
Q ss_pred HHHHHH
Q 028884 186 QLFEEI 191 (202)
Q Consensus 186 ~~~~~l 191 (202)
++++.|
T Consensus 151 ~L~~~I 156 (156)
T PF02421_consen 151 ELKDAI 156 (156)
T ss_dssp HHHHHH
T ss_pred HHHhhC
Confidence 999875
No 150
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.90 E-value=1.4e-23 Score=139.26 Aligned_cols=159 Identities=25% Similarity=0.351 Sum_probs=125.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
.++.+.++|..++|||||+|....+.+...-.++.+..- .++..+. +.+.+||.||++.++++|+.|.+.+++++
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGfnm----rk~tkgn-vtiklwD~gGq~rfrsmWerycR~v~aiv 93 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGFNM----RKVTKGN-VTIKLWDLGGQPRFRSMWERYCRGVSAIV 93 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeeccchhhhccccccee----EEeccCc-eEEEEEecCCCccHHHHHHHHhhcCcEEE
Confidence 468899999999999999999988887777666666544 2333454 89999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-----cCCeEEEeccCCCCCHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNIN 185 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 185 (202)
||+|+++++.+...+..+..+... ...++|++|++||.|++..- ........... ..+-.|.+|+++..|++
T Consensus 94 Y~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL--~~~~li~rmgL~sitdREvcC~siScke~~Nid 171 (186)
T KOG0075|consen 94 YVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGAL--SKIALIERMGLSSITDREVCCFSISCKEKVNID 171 (186)
T ss_pred EEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccc--cHHHHHHHhCccccccceEEEEEEEEcCCccHH
Confidence 999999998888777776665543 56789999999999976542 22222222222 12347999999999999
Q ss_pred HHHHHHHHHcCC
Q 028884 186 QLFEEIAKRLPR 197 (202)
Q Consensus 186 ~~~~~l~~~i~~ 197 (202)
.+.+||+++-..
T Consensus 172 ~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 172 ITLDWLIEHSKS 183 (186)
T ss_pred HHHHHHHHHhhh
Confidence 999999987543
No 151
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.90 E-value=4.2e-22 Score=143.75 Aligned_cols=156 Identities=16% Similarity=0.127 Sum_probs=110.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCcc----------------ccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKV----------------TVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA 98 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~ 98 (202)
+|+|+|.+|+|||||+++|.+......... ..+........... ...+.+||+||...+..
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~liDtpG~~~~~~ 77 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP---DRRVNFIDTPGHEDFSS 77 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC---CEEEEEEeCCCcHHHHH
Confidence 589999999999999999998765443311 11122222222222 26899999999998888
Q ss_pred cccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC--hHHHHHHHHH--------
Q 028884 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEK-------- 168 (202)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~-------- 168 (202)
.+..+++.+|++++|+|++++.+.. ...++..+.. .+.|+++|+||+|+..+.... .....+..+.
T Consensus 78 ~~~~~~~~~d~~i~v~d~~~~~~~~-~~~~~~~~~~---~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (189)
T cd00881 78 EVIRGLSVSDGAILVVDANEGVQPQ-TREHLRIARE---GGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKE 153 (189)
T ss_pred HHHHHHHhcCEEEEEEECCCCCcHH-HHHHHHHHHH---CCCCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhh
Confidence 8888899999999999999865433 2334444433 478999999999987532211 1222233322
Q ss_pred ------cCCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 169 ------NGMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 169 ------~~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
...+++++|++++.|+.+++++|.+.+..
T Consensus 154 ~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~~ 188 (189)
T cd00881 154 EGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred hhcccCCcceEEEEecccCcCHHHHHHHHHhhCCC
Confidence 35679999999999999999999999864
No 152
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.90 E-value=1.3e-22 Score=144.84 Aligned_cols=156 Identities=21% Similarity=0.200 Sum_probs=106.2
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh----hhcc---cccccCccEE
Q 028884 38 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----AALA---PLYYRGAAVA 110 (202)
Q Consensus 38 v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----~~~~---~~~~~~~d~~ 110 (202)
++|++|+|||||+++|.+........+..+.......+.+.++ ..+.+||+||.... +.++ ...++.+|++
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPDG--ARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCccccCCCceeecCcceEEEcCCC--CeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 5899999999999999997642111111222222222333212 57899999996321 1222 2346779999
Q ss_pred EEEEeCCCh------hHHHHHHHHHHHHHHcCC-------CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEec
Q 028884 111 VVVYDITSP------DSFNKAQYWVKELQKHGS-------PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 111 i~v~d~~~~------~s~~~~~~~~~~i~~~~~-------~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 177 (202)
++|+|+.+. .++.....|...+..... .+.|+++|+||+|+.....................++++|
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCEEEEe
Confidence 999999987 467777777777665432 4789999999999876544333222344444567799999
Q ss_pred cCCCCCHHHHHHHHHHHc
Q 028884 178 AKTADNINQLFEEIAKRL 195 (202)
Q Consensus 178 ~~~~~~i~~~~~~l~~~i 195 (202)
++++.|+.++++++.+.+
T Consensus 159 a~~~~gl~~l~~~l~~~~ 176 (176)
T cd01881 159 AKTEEGLDELIRAIYELL 176 (176)
T ss_pred hhhhcCHHHHHHHHHhhC
Confidence 999999999999997653
No 153
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.89 E-value=1.1e-22 Score=136.43 Aligned_cols=114 Identities=32% Similarity=0.649 Sum_probs=83.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCC-C-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFD-P-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
||+|+|+.|+|||||+++|.+.... . ......+......... .......+.+||++|.+.+...+...+..+|++|+
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIV-VDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEE-ETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEE-ecCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 7999999999999999999998875 1 1222223333322333 33443569999999999888877777999999999
Q ss_pred EEeCCChhHHHHHHH---HHHHHHHcCCCCCeEEEEEeCCC
Q 028884 113 VYDITSPDSFNKAQY---WVKELQKHGSPDIVMALVGNKAD 150 (202)
Q Consensus 113 v~d~~~~~s~~~~~~---~~~~i~~~~~~~~p~ivv~nK~D 150 (202)
|||++++.++..+.. |+..+... ..+.|++||+||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~-~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKR-DKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHH-SSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHcc-CCCCCEEEEEeccC
Confidence 999999999988744 45555554 45699999999998
No 154
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.89 E-value=5.7e-22 Score=138.82 Aligned_cols=146 Identities=21% Similarity=0.245 Sum_probs=103.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPLYY 104 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~ 104 (202)
++|+++|++|+|||||++++.+..... ...+..+.......+...+ ..+.+||+||...+.. .....+
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG---IPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC---EEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 589999999999999999999875422 1122233333233333322 5789999999654321 123456
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
..+|++++|+|++++.+......+.. ..+.|+++|+||+|+...... .......+++++|++++.|+
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~~~~~~------~~~~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v 145 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDLEILEL------PADKPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGL 145 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHHHHHHh------hcCCCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCH
Confidence 78999999999998766555433222 347899999999998764433 34455678999999999999
Q ss_pred HHHHHHHHHHc
Q 028884 185 NQLFEEIAKRL 195 (202)
Q Consensus 185 ~~~~~~l~~~i 195 (202)
++++++|.+.+
T Consensus 146 ~~l~~~l~~~~ 156 (157)
T cd04164 146 DELKEALLELA 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999998765
No 155
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.89 E-value=2.9e-22 Score=145.32 Aligned_cols=161 Identities=16% Similarity=0.115 Sum_probs=103.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC----CCCCC---CccccceeEEEEEEEec-----------CCcEEEEEEEeCCChhh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG----QFDPT---SKVTVGASFLSQTIALQ-----------DSTTVKFEIWDTAGQER 95 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~----~~~~~---~~~~~~~~~~~~~~~~~-----------~~~~~~~~i~D~~G~~~ 95 (202)
+||+++|++++|||||+++|+.. .+... .....+.......+.+. ....+.+.+|||||+..
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 58999999999999999999973 11111 11122222222222222 12247899999999876
Q ss_pred hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--ChHHHHHHHH------
Q 028884 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAE------ 167 (202)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~------ 167 (202)
+..........+|++++|+|++++........+. . ... .+.|+++++||+|+...... ..++..+...
T Consensus 81 ~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~-~-~~~--~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~ 156 (192)
T cd01889 81 LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV-I-GEI--LCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKTLEKT 156 (192)
T ss_pred HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH-H-HHH--cCCCEEEEEECcccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 5443334456789999999999754333322221 1 121 25689999999998643221 1122222111
Q ss_pred -HcCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 168 -KNGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 168 -~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
..+.+++++|++++.|+.+++++|.+.+..+
T Consensus 157 ~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~~ 188 (192)
T cd01889 157 RFKNSPIIPVSAKPGGGEAELGKDLNNLIVLP 188 (192)
T ss_pred CcCCCCEEEEeccCCCCHHHHHHHHHhccccc
Confidence 1356799999999999999999999998765
No 156
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.89 E-value=1.3e-21 Score=162.35 Aligned_cols=161 Identities=22% Similarity=0.236 Sum_probs=116.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC-------CCCCCcc------ccceeEEE--EEEEec--CCcEEEEEEEeCCChhh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPTSKV------TVGASFLS--QTIALQ--DSTTVKFEIWDTAGQER 95 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~------~~~~~~~~--~~~~~~--~~~~~~~~i~D~~G~~~ 95 (202)
.-+|+++|+.++|||||+++|+... +...+.. ..+..+.. ..+.+. ++..+.+.+|||||+..
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 4689999999999999999998742 1111111 11222222 222222 45558999999999999
Q ss_pred hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC---e
Q 028884 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM---F 172 (202)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~---~ 172 (202)
|...+..+++.+|++|+|+|++++.+.+....|...+. .++|+++|+||+|+.... ......++....++ .
T Consensus 83 F~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~----~~ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~ 156 (595)
T TIGR01393 83 FSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE----NDLEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASE 156 (595)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH----cCCCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcce
Confidence 99889999999999999999999766666666654442 367899999999986432 12223344444454 4
Q ss_pred EEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 173 FIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 173 ~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
++++||++|.|++++|++|.+.+..+.
T Consensus 157 vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 157 AILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred EEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 899999999999999999999998764
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=1e-21 Score=160.00 Aligned_cols=155 Identities=21% Similarity=0.211 Sum_probs=108.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 102 (202)
...+|+|+|.+|+|||||+|+|.+..... ...+..+.+.......+.+ ..+.+|||||.+ .+...+..
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~ 113 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG---RRFTVVDTGGWEPDAKGLQASVAEQAEV 113 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC---cEEEEEeCCCcCCcchhHHHHHHHHHHH
Confidence 34789999999999999999999876432 2333344444444444433 468899999965 23445566
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
+++.+|++|+|+|++++.++.. ..+...++. .++|+++|+||+|+.... .+....+....+ .++++||++|.
T Consensus 114 ~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~---~~~piilV~NK~Dl~~~~---~~~~~~~~~g~~-~~~~iSA~~g~ 185 (472)
T PRK03003 114 AMRTADAVLFVVDATVGATATD-EAVARVLRR---SGKPVILAANKVDDERGE---ADAAALWSLGLG-EPHPVSALHGR 185 (472)
T ss_pred HHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECccCCccc---hhhHHHHhcCCC-CeEEEEcCCCC
Confidence 7889999999999998755432 334444443 378999999999986432 112222222233 35799999999
Q ss_pred CHHHHHHHHHHHcCC
Q 028884 183 NINQLFEEIAKRLPR 197 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~ 197 (202)
|++++|++|++.+.+
T Consensus 186 gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 186 GVGDLLDAVLAALPE 200 (472)
T ss_pred CcHHHHHHHHhhccc
Confidence 999999999998865
No 158
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.89 E-value=5.1e-22 Score=161.75 Aligned_cols=158 Identities=23% Similarity=0.228 Sum_probs=109.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhcc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAALA 100 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~ 100 (202)
..++|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+.+ ..+.+|||||. +.+..+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~---~~~~l~DTaG~~~~~~~~~~~e~~~~~~ 286 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG---KTWRFVDTAGLRRRVKQASGHEYYASLR 286 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC---EEEEEEECCCccccccccchHHHHHHHH
Confidence 46999999999999999999999876432 2233334444344444433 35789999994 3333332
Q ss_pred -cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC--hHHHHH-HHHHcCCeEEEe
Q 028884 101 -PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIE-YAEKNGMFFIET 176 (202)
Q Consensus 101 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~-~~~~~~~~~~~~ 176 (202)
..+++.+|++|+|+|++++.++..+. ++..+.. .++|+++|+||+|+.+..... ..+... +.....++++++
T Consensus 287 ~~~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~---~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~ 362 (472)
T PRK03003 287 THAAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE---AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNI 362 (472)
T ss_pred HHHHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEE
Confidence 34578899999999999987776653 3444433 478999999999986532111 111111 122234679999
Q ss_pred ccCCCCCHHHHHHHHHHHcC
Q 028884 177 SAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~ 196 (202)
||++|.|++++|+.+.+.+.
T Consensus 363 SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 363 SAKTGRAVDKLVPALETALE 382 (472)
T ss_pred ECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
No 159
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.89 E-value=1e-21 Score=157.91 Aligned_cols=153 Identities=19% Similarity=0.210 Sum_probs=110.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LA 100 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~ 100 (202)
....++|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+.+ ..+.+|||||...+.. ..
T Consensus 200 ~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g---~~v~l~DTaG~~~~~~~ie~~gi~~~ 276 (442)
T TIGR00450 200 LDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG---ILIKLLDTAGIREHADFVERLGIEKS 276 (442)
T ss_pred hhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC---EEEEEeeCCCcccchhHHHHHHHHHH
Confidence 3457899999999999999999999875422 2233334444444555533 5689999999754332 22
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 180 (202)
..+++.+|++++|+|++++.++... |+..+. ..++|+++|+||+|+.+. +...++...+.+++.+|+++
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~---~~~~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~ 345 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF--LIIDLN---KSKKPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ 345 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH--HHHHHh---hCCCCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec
Confidence 4567889999999999998776654 555543 246899999999998543 12334556677899999998
Q ss_pred CCCHHHHHHHHHHHcCC
Q 028884 181 ADNINQLFEEIAKRLPR 197 (202)
Q Consensus 181 ~~~i~~~~~~l~~~i~~ 197 (202)
.|++++|+.|.+.+.+
T Consensus 346 -~gI~~~~~~L~~~i~~ 361 (442)
T TIGR00450 346 -LKIKALVDLLTQKINA 361 (442)
T ss_pred -CCHHHHHHHHHHHHHH
Confidence 6899999888887654
No 160
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.9e-21 Score=153.67 Aligned_cols=159 Identities=22% Similarity=0.177 Sum_probs=111.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhc---ccccccC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAAL---APLYYRG 106 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~---~~~~~~~ 106 (202)
..|+++|.|++||||||+++++.+......+..+.....-.+.+.++ ..+.+||+||..+ ...+ +...+..
T Consensus 159 adVglVG~pNaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~~--~~~~laD~PGliega~~~~gLg~~fLrhier 236 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDDG--RSFVMADIPGLIEGASEGVGLGHQFLRHIER 236 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEeCC--ceEEEEECCCCcccccccchHHHHHHHHHhh
Confidence 48999999999999999999986633222222222222222333322 4799999999632 1112 2233556
Q ss_pred ccEEEEEEeCCCh---hHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 107 AAVAVVVYDITSP---DSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 107 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
++++|+|+|+++. +.++....|.+.+.... ..++|++||+||+|+... .+....+++..+.+++++||+++
T Consensus 237 ~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tg 312 (424)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTG 312 (424)
T ss_pred CCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCC
Confidence 8999999999854 55677777777776642 247899999999997421 23445566666678999999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q 028884 182 DNINQLFEEIAKRLPRP 198 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~ 198 (202)
.|+++++++|.+.+.+.
T Consensus 313 eGI~eL~~~L~~~l~~~ 329 (424)
T PRK12297 313 QGLDELLYAVAELLEET 329 (424)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999887654
No 161
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=1.5e-21 Score=156.03 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=110.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh---------hhhcccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------YAALAPLYY 104 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~~ 104 (202)
.+|+++|.+|+|||||+|+|.+........+..+.+.....+.+.+.. .+.+|||+|..+ |.. +...+
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~~--~~~l~DTaG~~r~lp~~lve~f~~-tl~~~ 274 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVADVG--ETVLADTVGFIRHLPHDLVAAFKA-TLQET 274 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCCC--eEEEEecCcccccCCHHHHHHHHH-HHHHh
Confidence 689999999999999999999876543333344444444455554433 678999999732 222 12346
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe-EEEeccCCCCC
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADN 183 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~ 183 (202)
+.+|++|+|+|++++.++..+..|...+......++|+++|+||+|+..... ... . ....+.+ ++.+||++|.|
T Consensus 275 ~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~---~~~-~-~~~~~~~~~v~ISAktG~G 349 (426)
T PRK11058 275 RQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE---PRI-D-RDEENKPIRVWLSAQTGAG 349 (426)
T ss_pred hcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh---HHH-H-HHhcCCCceEEEeCCCCCC
Confidence 7899999999999988777766555555554445789999999999864311 111 1 1123444 58899999999
Q ss_pred HHHHHHHHHHHcCC
Q 028884 184 INQLFEEIAKRLPR 197 (202)
Q Consensus 184 i~~~~~~l~~~i~~ 197 (202)
+++++++|.+.+..
T Consensus 350 IdeL~e~I~~~l~~ 363 (426)
T PRK11058 350 IPLLFQALTERLSG 363 (426)
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999998854
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.88 E-value=5.5e-22 Score=160.18 Aligned_cols=150 Identities=25% Similarity=0.281 Sum_probs=109.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------cc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------AP 101 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~ 101 (202)
...++|+++|.+|+|||||+|+|.+..... ...+..+.+.....+.+.+ ..+.+|||||...+... ..
T Consensus 213 ~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g---~~i~l~DT~G~~~~~~~ie~~gi~~~~ 289 (449)
T PRK05291 213 REGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG---IPLRLIDTAGIRETDDEVEKIGIERSR 289 (449)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC---eEEEEEeCCCCCCCccHHHHHHHHHHH
Confidence 345899999999999999999999876422 2233334444444555533 57899999997643221 23
Q ss_pred ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
.+++.+|++++|+|++++.+++....|.. ..+.|+++|+||+|+.+..... .....+++++|+++|
T Consensus 290 ~~~~~aD~il~VvD~s~~~s~~~~~~l~~------~~~~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg 355 (449)
T PRK05291 290 EAIEEADLVLLVLDASEPLTEEDDEILEE------LKDKPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTG 355 (449)
T ss_pred HHHHhCCEEEEEecCCCCCChhHHHHHHh------cCCCCcEEEEEhhhccccchhh--------hccCCceEEEEeeCC
Confidence 46788999999999999877665444332 3468999999999986543221 334567999999999
Q ss_pred CCHHHHHHHHHHHcCC
Q 028884 182 DNINQLFEEIAKRLPR 197 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~ 197 (202)
.|+++++++|.+.+..
T Consensus 356 ~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 356 EGIDELREAIKELAFG 371 (449)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998754
No 163
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.88 E-value=2.1e-21 Score=160.40 Aligned_cols=156 Identities=14% Similarity=0.159 Sum_probs=112.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
...+..+|+++|++++|||||+++|.+..+.....+..+.+.....+.+.++. .+.+|||||++.|..++...+..+|
T Consensus 83 ~~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~~--~i~~iDTPGhe~F~~~r~rga~~aD 160 (587)
T TIGR00487 83 LVERPPVVTIMGHVDHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDGK--MITFLDTPGHEAFTSMRARGAKVTD 160 (587)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHhCCcccccCCceeecceEEEEEECCCc--EEEEEECCCCcchhhHHHhhhccCC
Confidence 34567899999999999999999999877665544445555544445544332 7899999999999999888899999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc---------CCeEEEeccC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN---------GMFFIETSAK 179 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~---------~~~~~~~s~~ 179 (202)
++|+|+|++++...+.. ..+... ...++|+++++||+|+.... .+......... ..+++++||+
T Consensus 161 iaILVVda~dgv~~qT~-e~i~~~---~~~~vPiIVviNKiDl~~~~---~e~v~~~L~~~g~~~~~~~~~~~~v~iSAk 233 (587)
T TIGR00487 161 IVVLVVAADDGVMPQTI-EAISHA---KAANVPIIVAINKIDKPEAN---PDRVKQELSEYGLVPEDWGGDTIFVPVSAL 233 (587)
T ss_pred EEEEEEECCCCCCHhHH-HHHHHH---HHcCCCEEEEEECcccccCC---HHHHHHHHHHhhhhHHhcCCCceEEEEECC
Confidence 99999999875322222 222222 23478999999999986422 22222222222 2469999999
Q ss_pred CCCCHHHHHHHHHH
Q 028884 180 TADNINQLFEEIAK 193 (202)
Q Consensus 180 ~~~~i~~~~~~l~~ 193 (202)
+|.|+++++++|..
T Consensus 234 tGeGI~eLl~~I~~ 247 (587)
T TIGR00487 234 TGDGIDELLDMILL 247 (587)
T ss_pred CCCChHHHHHhhhh
Confidence 99999999999865
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.88 E-value=8.4e-22 Score=138.03 Aligned_cols=147 Identities=23% Similarity=0.168 Sum_probs=99.2
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------cccccccCc
Q 028884 37 VLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------LAPLYYRGA 107 (202)
Q Consensus 37 ~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~~~~~~~~~ 107 (202)
+++|.+|+|||||+++|.+..... ...+..+...........+ ..+.+|||||...+.. .+...++.+
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG---REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC---eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 479999999999999999864221 1122222223333333322 5799999999776432 334567889
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQ 186 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 186 (202)
|++++|+|..++.+.... .+...+.. .+.|+++|+||+|+.+.... .......+. +++++|++++.|+++
T Consensus 78 d~ii~v~d~~~~~~~~~~-~~~~~~~~---~~~piiiv~nK~D~~~~~~~-----~~~~~~~~~~~~~~~Sa~~~~gv~~ 148 (157)
T cd01894 78 DVILFVVDGREGLTPADE-EIAKYLRK---SKKPVILVVNKVDNIKEEDE-----AAEFYSLGFGEPIPISAEHGRGIGD 148 (157)
T ss_pred CEEEEEEeccccCCccHH-HHHHHHHh---cCCCEEEEEECcccCChHHH-----HHHHHhcCCCCeEEEecccCCCHHH
Confidence 999999999876443332 22233332 25899999999998654322 222333454 689999999999999
Q ss_pred HHHHHHHHc
Q 028884 187 LFEEIAKRL 195 (202)
Q Consensus 187 ~~~~l~~~i 195 (202)
++++|++.+
T Consensus 149 l~~~l~~~~ 157 (157)
T cd01894 149 LLDAILELL 157 (157)
T ss_pred HHHHHHhhC
Confidence 999998764
No 165
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.88 E-value=1.4e-21 Score=142.76 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=104.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC---CCccccceeEEEEEEEec------------------------C--C----
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQTIALQ------------------------D--S---- 80 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~------------------------~--~---- 80 (202)
++|+++|+.|+|||||++.+.+...+. ......+.........+. . +
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 579999999999999999997642111 111111111111111110 0 1
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--C
Q 028884 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--P 158 (202)
Q Consensus 81 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~ 158 (202)
....+.|||+||++.+...+...+..+|++++|+|++++.........+..+.... ..|+++|+||+|+...... .
T Consensus 81 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~--~~~iiivvNK~Dl~~~~~~~~~ 158 (203)
T cd01888 81 LVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMG--LKHIIIVQNKIDLVKEEQALEN 158 (203)
T ss_pred cccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcC--CCcEEEEEEchhccCHHHHHHH
Confidence 01578999999999888877778888999999999997421112222223333221 2468999999998653211 1
Q ss_pred hHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 159 AQDGIEYAEK---NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 159 ~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
.++...+... ...+++++||++|.|+++++++|.+.+.++.
T Consensus 159 ~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 159 YEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred HHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 1223333332 2567999999999999999999999998764
No 166
>COG1159 Era GTPase [General function prediction only]
Probab=99.88 E-value=2.3e-21 Score=144.13 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=117.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPL 102 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~ 102 (202)
.+.--|+++|.|++|||||+|++++.+.........++.-....+...++ .++.++||||.- .+......
T Consensus 4 ~ksGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~--~QiIfvDTPGih~pk~~l~~~m~~~a~~ 81 (298)
T COG1159 4 FKSGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN--AQIIFVDTPGIHKPKHALGELMNKAARS 81 (298)
T ss_pred ceEEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC--ceEEEEeCCCCCCcchHHHHHHHHHHHH
Confidence 34567999999999999999999999988777766666555555555443 589999999932 22334455
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-CCeEEEeccCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTA 181 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ 181 (202)
.+..+|+++||+|++.+... .....++.++. .+.|+++++||.|...+..........+.... ...++++||++|
T Consensus 82 sl~dvDlilfvvd~~~~~~~-~d~~il~~lk~---~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g 157 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGP-GDEFILEQLKK---TKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKG 157 (298)
T ss_pred HhccCcEEEEEEeccccCCc-cHHHHHHHHhh---cCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeecccc
Confidence 67889999999999986322 22223333443 36799999999998776543222223333232 346999999999
Q ss_pred CCHHHHHHHHHHHcCCCC
Q 028884 182 DNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~~ 199 (202)
.|++.+.+.+.+++.+-.
T Consensus 158 ~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 158 DNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred CCHHHHHHHHHHhCCCCC
Confidence 999999999999998754
No 167
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.88 E-value=1.6e-21 Score=137.00 Aligned_cols=139 Identities=17% Similarity=0.236 Sum_probs=97.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh-----hhhhhcccccccCccE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ-----ERYAALAPLYYRGAAV 109 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~-----~~~~~~~~~~~~~~d~ 109 (202)
+|+++|.+|+|||||++++.+... . ... ...+.+... .+||+||. +.++.+. ..++.+|+
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~-~-~~~-------~~~v~~~~~-----~~iDtpG~~~~~~~~~~~~~-~~~~~ad~ 67 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYT-L-ARK-------TQAVEFNDK-----GDIDTPGEYFSHPRWYHALI-TTLQDVDM 67 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc-c-Ccc-------ceEEEECCC-----CcccCCccccCCHHHHHHHH-HHHhcCCE
Confidence 799999999999999999886431 1 111 111122111 26999996 2223322 34678999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC--eEEEeccCCCCCHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM--FFIETSAKTADNINQL 187 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~~s~~~~~~i~~~ 187 (202)
+++|+|+++..++ +..|+..+ ..+.|+++++||+|+... ..+...+++...+. +++++|++++.|++++
T Consensus 68 il~v~d~~~~~s~--~~~~~~~~----~~~~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l 138 (158)
T PRK15467 68 LIYVHGANDPESR--LPAGLLDI----GVSKRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQSVQQL 138 (158)
T ss_pred EEEEEeCCCcccc--cCHHHHhc----cCCCCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccCHHHH
Confidence 9999999988654 22343332 236789999999998542 34555666667664 8999999999999999
Q ss_pred HHHHHHHcCC
Q 028884 188 FEEIAKRLPR 197 (202)
Q Consensus 188 ~~~l~~~i~~ 197 (202)
|++|.+.+..
T Consensus 139 ~~~l~~~~~~ 148 (158)
T PRK15467 139 VDYLASLTKQ 148 (158)
T ss_pred HHHHHHhchh
Confidence 9999888754
No 168
>PRK00089 era GTPase Era; Reviewed
Probab=99.88 E-value=4.1e-21 Score=147.87 Aligned_cols=161 Identities=21% Similarity=0.186 Sum_probs=107.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh--------hhccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY--------AALAPLY 103 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~~~~~~~ 103 (202)
+.-.|+|+|.+|+|||||+|+|++...........++......+... +. ..+.++||||.... .......
T Consensus 4 ~~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~-~~-~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 4 KSGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTE-DD-AQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eeEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEc-CC-ceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 45679999999999999999999987654433332222222222222 22 68999999995321 2233445
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-CCeEEEeccCCCC
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTAD 182 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~ 182 (202)
+..+|++++|+|++++.+. .....+..+. ..+.|+++|+||+|+.............+.... ...++++|++++.
T Consensus 82 ~~~~D~il~vvd~~~~~~~-~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~ 157 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGP-GDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGD 157 (292)
T ss_pred HhcCCEEEEEEeCCCCCCh-hHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCC
Confidence 7789999999999984221 1222233333 336899999999998743232333344444433 3569999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q 028884 183 NINQLFEEIAKRLPRP 198 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~~ 198 (202)
|+++++++|.+.+.+.
T Consensus 158 gv~~L~~~L~~~l~~~ 173 (292)
T PRK00089 158 NVDELLDVIAKYLPEG 173 (292)
T ss_pred CHHHHHHHHHHhCCCC
Confidence 9999999999998654
No 169
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.87 E-value=6e-21 Score=134.67 Aligned_cols=157 Identities=22% Similarity=0.186 Sum_probs=103.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh--------hcccccc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA--------ALAPLYY 104 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------~~~~~~~ 104 (202)
..+|+++|.+|+|||||++++.+..................... ......+.+||+||..... ......+
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~ 80 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIY--TDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEE--EcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHH
Confidence 57899999999999999999998754333222222222112221 1223689999999954321 2334457
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-CCeEEEeccCCCCC
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADN 183 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~ 183 (202)
..+|++++|+|++++.+. ....++..+... +.|+++|+||+|+........+....+.... ..+++.+|++++.+
T Consensus 81 ~~~d~i~~v~d~~~~~~~-~~~~~~~~~~~~---~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 156 (168)
T cd04163 81 KDVDLVLFVVDASEPIGE-GDEFILELLKKS---KTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGEN 156 (168)
T ss_pred HhCCEEEEEEECCCccCc-hHHHHHHHHHHh---CCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCC
Confidence 789999999999987211 112233334332 5789999999998643333333333444434 36799999999999
Q ss_pred HHHHHHHHHHHc
Q 028884 184 INQLFEEIAKRL 195 (202)
Q Consensus 184 i~~~~~~l~~~i 195 (202)
++++++.|.+.+
T Consensus 157 ~~~l~~~l~~~~ 168 (168)
T cd04163 157 VDELLEEIVKYL 168 (168)
T ss_pred hHHHHHHHHhhC
Confidence 999999998764
No 170
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.87 E-value=5.9e-21 Score=138.79 Aligned_cols=162 Identities=22% Similarity=0.174 Sum_probs=105.9
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhh
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYA 97 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~ 97 (202)
.+....++|+++|.+|+|||||+++|.+..+.....++.+.......... . ..+.+||+||. +.+.
T Consensus 19 ~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-~~l~l~DtpG~~~~~~~~~~~~~~~ 94 (196)
T PRK00454 19 LPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---N-DKLRLVDLPGYGYAKVSKEEKEKWQ 94 (196)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---C-CeEEEeCCCCCCCcCCCchHHHHHH
Confidence 34456799999999999999999999987643333333333322222221 1 57999999993 3444
Q ss_pred hcccccccC---ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC--hHHHHHHHHHcCCe
Q 028884 98 ALAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEKNGMF 172 (202)
Q Consensus 98 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~~~~~ 172 (202)
.+...+++. .+++++++|.+.+.+.... .+...+. ..+.|+++++||+|+....... .+...........+
T Consensus 95 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~i~~~l~---~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~ 170 (196)
T PRK00454 95 KLIEEYLRTRENLKGVVLLIDSRHPLKELDL-QMIEWLK---EYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE 170 (196)
T ss_pred HHHHHHHHhCccceEEEEEEecCCCCCHHHH-HHHHHHH---HcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence 444444544 4678888998876433221 1222232 2368899999999986543221 12233333333678
Q ss_pred EEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 173 FIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 173 ~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
++++|++++.|++++++.|.+.+.+
T Consensus 171 ~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 171 VILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 9999999999999999999988765
No 171
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.87 E-value=1.5e-21 Score=130.95 Aligned_cols=168 Identities=23% Similarity=0.497 Sum_probs=142.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
++.-.++|.++|++..|||||+-+|.++.++..+..+.+.....+.+.+.+.. +.+.+||..|++++..+.+...+.+-
T Consensus 16 ~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~-IsfSIwdlgG~~~~~n~lPiac~dsv 94 (205)
T KOG1673|consen 16 SNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTD-ISFSIWDLGGQREFINMLPIACKDSV 94 (205)
T ss_pred ccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceE-EEEEEEecCCcHhhhccCceeecCcE
Confidence 45568999999999999999999999999888888888888888888776544 89999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-----CCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-----REVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-----~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
+++++||++.+.++..+..||...+......+| |+|++|.|..-. +.....+++.+++..+.++++||+....|
T Consensus 95 aIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sIN 173 (205)
T KOG1673|consen 95 AILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSIN 173 (205)
T ss_pred EEEEEEecCchHHHHHHHHHHHHHhccCCccce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeecccccc
Confidence 999999999999999999999998887555565 667999996321 22233456778888899999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028884 184 INQLFEEIAKRLPRP 198 (202)
Q Consensus 184 i~~~~~~l~~~i~~~ 198 (202)
++.+|..+..++-.-
T Consensus 174 v~KIFK~vlAklFnL 188 (205)
T KOG1673|consen 174 VQKIFKIVLAKLFNL 188 (205)
T ss_pred HHHHHHHHHHHHhCC
Confidence 999999988776543
No 172
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.87 E-value=1.3e-21 Score=141.45 Aligned_cols=160 Identities=21% Similarity=0.206 Sum_probs=108.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC------------------ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
+.++|+++|+.++|||||+++|+........ ....+.......+.. ......+.++|+||+
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~-~~~~~~i~~iDtPG~ 80 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEK-NENNRKITLIDTPGH 80 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEB-TESSEEEEEEEESSS
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccc-cccccceeecccccc
Confidence 5789999999999999999999864321111 112223332333331 223378999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC-ChHHHH-HHHHHc--
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGI-EYAEKN-- 169 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~-~~~~~~-- 169 (202)
..|.......+..+|++|+|+|+.++... ...+.+..+... ++|+++|+||+|+...+.. ...+.. .+.+..
T Consensus 81 ~~f~~~~~~~~~~~D~ailvVda~~g~~~-~~~~~l~~~~~~---~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~~~~~~ 156 (188)
T PF00009_consen 81 EDFIKEMIRGLRQADIAILVVDANDGIQP-QTEEHLKILREL---GIPIIVVLNKMDLIEKELEEIIEEIKEKLLKEYGE 156 (188)
T ss_dssp HHHHHHHHHHHTTSSEEEEEEETTTBSTH-HHHHHHHHHHHT---T-SEEEEEETCTSSHHHHHHHHHHHHHHHHHHTTS
T ss_pred cceeecccceecccccceeeeeccccccc-cccccccccccc---ccceEEeeeeccchhhhHHHHHHHHHHHhcccccc
Confidence 99988888889999999999999977332 234444444444 6779999999998722111 011111 222222
Q ss_pred ----CCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 170 ----GMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 170 ----~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
.++++++|+++|.|+.++++.|.+.++
T Consensus 157 ~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 157 NGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp TTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred CccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 357999999999999999999999875
No 173
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=6.2e-21 Score=150.99 Aligned_cols=162 Identities=19% Similarity=0.135 Sum_probs=110.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRG 106 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 106 (202)
..|+++|.||+|||||+|+|++.+......+..+.....-.+.+.+. ..+.++|+||..+ .......++..
T Consensus 160 adValVG~PNaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~~--~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~r 237 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDDE--RSFVVADIPGLIEGASEGAGLGIRFLKHLER 237 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeCCC--cEEEEEeCCCccccccchhhHHHHHHHHHHh
Confidence 47999999999999999999986642222232232333333333322 3689999999642 11112235778
Q ss_pred ccEEEEEEeCC---ChhHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC--CeEEEeccC
Q 028884 107 AAVAVVVYDIT---SPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAK 179 (202)
Q Consensus 107 ~d~~i~v~d~~---~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~ 179 (202)
+|++++|+|++ +.+.++....|++.+.... ..+.|+++|+||+|+...... .+....+....+ .+++.+||+
T Consensus 238 advlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~ 316 (390)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAA 316 (390)
T ss_pred CCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECC
Confidence 99999999988 4455666777777766542 246899999999998654322 233334444433 368999999
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q 028884 180 TADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~~ 198 (202)
++.|++++++.|.+.+.+.
T Consensus 317 tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 317 SGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCcCHHHHHHHHHHHhhhC
Confidence 9999999999999988654
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.87 E-value=5.3e-21 Score=154.68 Aligned_cols=158 Identities=19% Similarity=0.183 Sum_probs=105.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc----------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL---------- 99 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---------- 99 (202)
...++|+++|.+++|||||+|+|++....... .+..+.+.....+...+ ..+.+|||||...+...
T Consensus 170 ~~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~e~~~~~ 246 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG---KKYLLIDTAGIRRKGKVTEGVEKYSVL 246 (429)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC---cEEEEEECCCccccccchhhHHHHHHH
Confidence 45689999999999999999999986543222 22222233233333322 37899999996433211
Q ss_pred -ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-HH----cCCeE
Q 028884 100 -APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-EK----NGMFF 173 (202)
Q Consensus 100 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~~----~~~~~ 173 (202)
...+++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+... ..++..... .. ..+++
T Consensus 247 ~~~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~---~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~v 321 (429)
T TIGR03594 247 RTLKAIERADVVLLVLDATEGITEQDLR-IAGLILE---AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPI 321 (429)
T ss_pred HHHHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH---cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCce
Confidence 234678899999999999886655432 3333333 3689999999999872211 111222111 11 24789
Q ss_pred EEeccCCCCCHHHHHHHHHHHcC
Q 028884 174 IETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+++||++|.|+.++|+++.+.+.
T Consensus 322 i~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 322 VFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 175
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.2e-20 Score=134.03 Aligned_cols=155 Identities=21% Similarity=0.196 Sum_probs=101.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhhh----------h-hcc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----------A-ALA 100 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----------~-~~~ 100 (202)
.++|+++|.+|+|||||+++|.+....... .+..+.......+...+ ..+.+||+||.... . ...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG---KKYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC---eeEEEEECCCCccccchhccHHHHHHHHH
Confidence 579999999999999999999986533222 22222222222333322 45889999995432 1 111
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHH-HHHHc----CCeEEE
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-YAEKN----GMFFIE 175 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~~----~~~~~~ 175 (202)
...+..+|++++|+|.+++.+.... .++..+.. .+.|+++++||+|+............. ..... ..++++
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL-RIAGLILE---EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF 154 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh---cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence 2346689999999999988665443 23333332 368999999999987653222222222 22222 367999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028884 176 TSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~ 194 (202)
+|++++.|+.++++++.+.
T Consensus 155 ~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 155 ISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred EeccCCCCHHHHHHHHHHh
Confidence 9999999999999998764
No 176
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.87 E-value=8e-21 Score=153.07 Aligned_cols=163 Identities=19% Similarity=0.122 Sum_probs=107.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYY 104 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 104 (202)
-...|+|+|.|++|||||+++|.+........+..+.....-.+.+.+ ..+.+||+||... .......++
T Consensus 158 ~~adV~LVG~PNAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~---~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 158 SVADVGLVGFPSAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD---TRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred ccceEEEEEcCCCCHHHHHHHHhcCCccccccCcccccceEEEEEECC---eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 346899999999999999999998654332223233333333333333 5799999999521 111122346
Q ss_pred cCccEEEEEEeCCCh----hHHHHHHHHHHHHHHcC-----------CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc
Q 028884 105 RGAAVAVVVYDITSP----DSFNKAQYWVKELQKHG-----------SPDIVMALVGNKADLHEKREVPAQDGIEYAEKN 169 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~----~s~~~~~~~~~~i~~~~-----------~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 169 (202)
..+|++|+|+|+++. +.+..+..+...+.... ....|++||+||+|+.+.... .+.........
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el-~e~l~~~l~~~ 313 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAREL-AEFVRPELEAR 313 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHH-HHHHHHHHHHc
Confidence 779999999999752 23444444444443321 246899999999998654322 12222333445
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 170 GMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 170 ~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+++++++||+++.|+++++++|.+.+...
T Consensus 314 g~~Vf~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 314 GWPVFEVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 78899999999999999999999887553
No 177
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.6e-20 Score=123.88 Aligned_cols=158 Identities=23% Similarity=0.397 Sum_probs=122.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
.+.+|+++|..++||||++..|.-+.. ....++.+. ....+.+.+ +.+.+||.+|++..+.+|++|+.+..++|
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-~~~ipTvGF--nvetVtykN---~kfNvwdvGGqd~iRplWrhYy~gtqglI 89 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGF--NVETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQGLI 89 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-cccccccce--eEEEEEeee---eEEeeeeccCchhhhHHHHhhccCCceEE
Confidence 379999999999999999999987653 333444444 344455445 78999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-----cCCeEEEeccCCCCCHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNIN 185 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i~ 185 (202)
||+|..+.+..++.+..+..+.. .+..+.|++|.+||.|++... ..+++..+... ...-+.++++.+|.++.
T Consensus 90 FV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~gdgL~ 167 (180)
T KOG0071|consen 90 FVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSGDGLK 167 (180)
T ss_pred EEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccchhHH
Confidence 99999998888888766665543 356689999999999987643 33344433322 22347889999999999
Q ss_pred HHHHHHHHHcCC
Q 028884 186 QLFEEIAKRLPR 197 (202)
Q Consensus 186 ~~~~~l~~~i~~ 197 (202)
+-|.||...+.+
T Consensus 168 eglswlsnn~~~ 179 (180)
T KOG0071|consen 168 EGLSWLSNNLKE 179 (180)
T ss_pred HHHHHHHhhccC
Confidence 999999887764
No 178
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.86 E-value=1.6e-20 Score=155.98 Aligned_cols=162 Identities=19% Similarity=0.202 Sum_probs=114.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC--CCC-----C--------CccccceeEEEEEEEe--cCCcEEEEEEEeCCChh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----T--------SKVTVGASFLSQTIAL--QDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----~--------~~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G~~ 94 (202)
+.-+++++|+.++|||||+++|+... ... . .....+.......+.+ .++..+.+.+|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 45689999999999999999998631 110 0 0111222211222222 24445899999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe--
Q 028884 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-- 172 (202)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 172 (202)
.|...+..+++.+|++|+|+|++++...+....|+... ..++|+++|+||+|+..... .....++....++.
T Consensus 86 dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~----~~~lpiIvViNKiDl~~a~~--~~v~~ei~~~lg~~~~ 159 (600)
T PRK05433 86 DFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL----ENDLEIIPVLNKIDLPAADP--ERVKQEIEDVIGIDAS 159 (600)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH----HCCCCEEEEEECCCCCcccH--HHHHHHHHHHhCCCcc
Confidence 99988999999999999999999876555555554433 23688999999999854321 12223333334443
Q ss_pred -EEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 173 -FIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 173 -~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
++.+||++|.|+.+++++|.+.+..+.
T Consensus 160 ~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 899999999999999999999998764
No 179
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.86 E-value=1.8e-20 Score=155.51 Aligned_cols=158 Identities=19% Similarity=0.158 Sum_probs=112.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+.|+++|++++|||||+++|.+.. +......+.+.+.....+.+.+ ..+.+||+||++.|.......+.++|++
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~---~~v~~iDtPGhe~f~~~~~~g~~~aD~a 77 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD---YRLGFIDVPGHEKFISNAIAGGGGIDAA 77 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC---EEEEEEECCCHHHHHHHHHhhhccCCEE
Confidence 478999999999999999999743 2233334455555554555443 6899999999999988888888999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCC--ChHHHHHHHHHc----CCeEEEeccCCCCC
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV--PAQDGIEYAEKN----GMFFIETSAKTADN 183 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~----~~~~~~~s~~~~~~ 183 (202)
++|+|++++.. .+..+.+..+... ++| ++||+||+|+.+.... ..++...+.... +++++++|+++|.|
T Consensus 78 ILVVDa~~G~~-~qT~ehl~il~~l---gi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~G 153 (581)
T TIGR00475 78 LLVVDADEGVM-TQTGEHLAVLDLL---GIPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQG 153 (581)
T ss_pred EEEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCC
Confidence 99999998421 1222333333332 566 9999999998754322 122344444443 47899999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028884 184 INQLFEEIAKRLPRP 198 (202)
Q Consensus 184 i~~~~~~l~~~i~~~ 198 (202)
++++++.|.+.+...
T Consensus 154 I~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 154 IGELKKELKNLLESL 168 (581)
T ss_pred chhHHHHHHHHHHhC
Confidence 999999987766543
No 180
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.86 E-value=1.1e-20 Score=159.74 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=110.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+...|+|+|+.++|||||+++|....+.......++.......+.+.+ ..+.||||||++.|..++...+..+|+
T Consensus 287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~---~~ItfiDTPGhe~F~~m~~rga~~aDi 363 (787)
T PRK05306 287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG---GKITFLDTPGHEAFTAMRARGAQVTDI 363 (787)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHhCCccccccCceeeeccEEEEEECC---EEEEEEECCCCccchhHHHhhhhhCCE
Confidence 56789999999999999999999988766544333344444333444432 579999999999999999888999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC-hHHHH---HHHHHc--CCeEEEeccCCCCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGI---EYAEKN--GMFFIETSAKTADN 183 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~---~~~~~~--~~~~~~~s~~~~~~ 183 (202)
+|+|||++++...+... .+..+ ...++|++|++||+|+....... ..+.. .+...+ .++++++||++|.|
T Consensus 364 aILVVdAddGv~~qT~e-~i~~a---~~~~vPiIVviNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~G 439 (787)
T PRK05306 364 VVLVVAADDGVMPQTIE-AINHA---KAAGVPIIVAINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEG 439 (787)
T ss_pred EEEEEECCCCCCHhHHH-HHHHH---HhcCCcEEEEEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCC
Confidence 99999998853222212 22222 23478999999999986432100 01111 112222 26799999999999
Q ss_pred HHHHHHHHHHH
Q 028884 184 INQLFEEIAKR 194 (202)
Q Consensus 184 i~~~~~~l~~~ 194 (202)
++++|++|...
T Consensus 440 I~eLle~I~~~ 450 (787)
T PRK05306 440 IDELLEAILLQ 450 (787)
T ss_pred chHHHHhhhhh
Confidence 99999998753
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.85 E-value=1.6e-20 Score=157.52 Aligned_cols=159 Identities=16% Similarity=0.198 Sum_probs=110.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEec-CCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ-DSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..+..+|+|+|+.++|||||+++|....+........+.......+.+. ++....+.||||||++.|..++..++..+|
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aD 320 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTD 320 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCC
Confidence 4567899999999999999999999876544333333322222222221 223378999999999999999998999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHH-------HHHcC--CeEEEeccC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY-------AEKNG--MFFIETSAK 179 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-------~~~~~--~~~~~~s~~ 179 (202)
++|+|+|++++...+.... +..+ ...++|++|++||+|+.... ....... ...++ ++++++||+
T Consensus 321 iaILVVDA~dGv~~QT~E~-I~~~---k~~~iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSAk 393 (742)
T CHL00189 321 IAILIIAADDGVKPQTIEA-INYI---QAANVPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISAS 393 (742)
T ss_pred EEEEEEECcCCCChhhHHH-HHHH---HhcCceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEECC
Confidence 9999999987533222222 2222 23478999999999986532 1111111 11222 679999999
Q ss_pred CCCCHHHHHHHHHHHc
Q 028884 180 TADNINQLFEEIAKRL 195 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i 195 (202)
+|.|+++++++|....
T Consensus 394 tG~GIdeLle~I~~l~ 409 (742)
T CHL00189 394 QGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCHHHHHHhhhhhh
Confidence 9999999999988754
No 182
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.85 E-value=1.9e-20 Score=134.36 Aligned_cols=150 Identities=20% Similarity=0.189 Sum_probs=95.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhh
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYA 97 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~ 97 (202)
.+....++|+|+|.+|+|||||+++|.+..+.....++.+.......+... + .+.+||+||. ..+.
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpG~~~~~~~~~~~~~~~ 88 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVN-D---GFRLVDLPGYGYAKVSKEEKEKWQ 88 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeC-C---cEEEEeCCCCccccCChhHHHHHH
Confidence 445678999999999999999999999875333323333332222222222 2 5899999994 2343
Q ss_pred hccccccc---CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--ChHHHHHHHHHcC--
Q 028884 98 ALAPLYYR---GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNG-- 170 (202)
Q Consensus 98 ~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~-- 170 (202)
.+...+++ .+|++++|+|++++.+.... .++..+.. .++|+++++||+|+...... ..++.+......+
T Consensus 89 ~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~-~~~~~~~~---~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~ 164 (179)
T TIGR03598 89 KLIEEYLEKRENLKGVVLLMDIRHPLKELDL-EMLEWLRE---RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADD 164 (179)
T ss_pred HHHHHHHHhChhhcEEEEEecCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCC
Confidence 33344444 35799999999886443333 22333332 36889999999998643221 2233334444433
Q ss_pred CeEEEeccCCCCCHH
Q 028884 171 MFFIETSAKTADNIN 185 (202)
Q Consensus 171 ~~~~~~s~~~~~~i~ 185 (202)
..++++||++|+|++
T Consensus 165 ~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 165 PSVQLFSSLKKTGID 179 (179)
T ss_pred CceEEEECCCCCCCC
Confidence 479999999999873
No 183
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=7.1e-20 Score=148.14 Aligned_cols=152 Identities=23% Similarity=0.200 Sum_probs=107.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCCh--------hhhhhccccccc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ--------ERYAALAPLYYR 105 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~~~~~~ 105 (202)
+|+++|.+|+|||||+|+|.+...... ..+..+.+.......+.+ ..+.+|||||. ..+......+++
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~---~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG---REFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC---eEEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 589999999999999999998764322 223334444444444433 46999999995 445566677788
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCH
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI 184 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i 184 (202)
.+|++++|+|+.++.+... ..+...+++ .++|+++|+||+|+...... ... ...++. .++++||++|.|+
T Consensus 78 ~ad~vl~vvD~~~~~~~~d-~~i~~~l~~---~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~vSa~~g~gv 148 (429)
T TIGR03594 78 EADVILFVVDGREGLTPED-EEIAKWLRK---SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPISAEHGRGI 148 (429)
T ss_pred hCCEEEEEEeCCCCCCHHH-HHHHHHHHH---hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEEeCCcCCCh
Confidence 9999999999987633322 222333333 36889999999998654321 122 334555 6999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028884 185 NQLFEEIAKRLPRP 198 (202)
Q Consensus 185 ~~~~~~l~~~i~~~ 198 (202)
.++++++.+.+.+.
T Consensus 149 ~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 149 GDLLDAILELLPEE 162 (429)
T ss_pred HHHHHHHHHhcCcc
Confidence 99999999988653
No 184
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.84 E-value=5e-20 Score=149.24 Aligned_cols=148 Identities=23% Similarity=0.208 Sum_probs=103.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhcccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAPLYY 104 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~~ 104 (202)
++|+++|.+|+|||||+|+|.+..... ...+..+.+.....+.+.+ ..+.+|||||... +......++
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG---REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC---cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 579999999999999999999876422 2233334444444444433 6899999999875 333445577
Q ss_pred cCccEEEEEEeCCChhHHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe-EEEeccCCC
Q 028884 105 RGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTA 181 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~ 181 (202)
..+|++|+|+|++++.+.. .+..| ++.. ++|+++|+||+|+.+. .....++ ...++. ++++||++|
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~~~~~~---l~~~---~~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g 147 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADEEIAKI---LRKS---NKPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHG 147 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHHHHHHH---HHHc---CCcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCC
Confidence 8899999999998863332 22333 3322 6899999999996431 1222222 344553 899999999
Q ss_pred CCHHHHHHHHHHHc
Q 028884 182 DNINQLFEEIAKRL 195 (202)
Q Consensus 182 ~~i~~~~~~l~~~i 195 (202)
.|+.++++.+++..
T Consensus 148 ~gv~~l~~~I~~~~ 161 (435)
T PRK00093 148 RGIGDLLDAILEEL 161 (435)
T ss_pred CCHHHHHHHHHhhC
Confidence 99999999998744
No 185
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.84 E-value=3e-20 Score=154.32 Aligned_cols=146 Identities=24% Similarity=0.255 Sum_probs=105.6
Q ss_pred cCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc------ccccc--cCccEEE
Q 028884 40 GDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL------APLYY--RGAAVAV 111 (202)
Q Consensus 40 G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~--~~~d~~i 111 (202)
|.+|+|||||+|+|.+........+..+.+.....+.+.+ ..+++||+||..++... .+.++ ..+|+++
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~---~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQG---EDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECC---eEEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 8999999999999998765444445555555444455433 46899999998765433 23232 3689999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
+|+|.++.+. ...+...+. ..+.|+++|+||+|+.+..... .+...+++..+++++++||++|.|++++++++
T Consensus 78 ~VvDat~ler---~l~l~~ql~---~~~~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i 150 (591)
T TIGR00437 78 NVVDASNLER---NLYLTLQLL---ELGIPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGIERLKDAI 150 (591)
T ss_pred EEecCCcchh---hHHHHHHHH---hcCCCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCHHHHHHHH
Confidence 9999987432 222222232 3478999999999986554443 45677888889999999999999999999999
Q ss_pred HHHc
Q 028884 192 AKRL 195 (202)
Q Consensus 192 ~~~i 195 (202)
.+..
T Consensus 151 ~~~~ 154 (591)
T TIGR00437 151 RKAI 154 (591)
T ss_pred HHHh
Confidence 8764
No 186
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.84 E-value=5.3e-20 Score=128.69 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=102.2
Q ss_pred EEcCCCCcHHHHHHHHHhCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-------cccccccCccE
Q 028884 38 LLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-------LAPLYYRGAAV 109 (202)
Q Consensus 38 v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------~~~~~~~~~d~ 109 (202)
++|.+|+|||||++++.+...... .....+............ ...+.+||+||...... ....+++.+|+
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP--LGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC--CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 589999999999999998654422 222222222222222221 25899999999765432 33446788999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChH---HHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ---DGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
+++|+|.+++....... +..... ....|+++|+||.|+......... ...........+++++|++++.|+.+
T Consensus 79 il~v~~~~~~~~~~~~~-~~~~~~---~~~~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~ 154 (163)
T cd00880 79 ILFVVDADLRADEEEEK-LLELLR---ERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDE 154 (163)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHH---hcCCeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHH
Confidence 99999999886555443 333332 357889999999998754332221 11223334567899999999999999
Q ss_pred HHHHHHHHc
Q 028884 187 LFEEIAKRL 195 (202)
Q Consensus 187 ~~~~l~~~i 195 (202)
++++|.+.+
T Consensus 155 l~~~l~~~~ 163 (163)
T cd00880 155 LREALIEAL 163 (163)
T ss_pred HHHHHHhhC
Confidence 999998753
No 187
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.84 E-value=1.6e-19 Score=131.88 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=85.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc-cEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA-AVAVVV 113 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~-d~~i~v 113 (202)
+|+++|++++|||||+++|..+.+....... ............ .....+.+||+||+.+++..+..+++.+ +++|+|
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~-~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTVTSI-EPNVATFILNSE-GKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCccCcE-eecceEEEeecC-CCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 6899999999999999999998765544322 222221111111 2236799999999999998888889998 999999
Q ss_pred EeCCCh-hHHHHHHHHHHHHHH---cCCCCCeEEEEEeCCCCCC
Q 028884 114 YDITSP-DSFNKAQYWVKELQK---HGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 114 ~d~~~~-~s~~~~~~~~~~i~~---~~~~~~p~ivv~nK~D~~~ 153 (202)
+|+.+. .++.....|+..+.. ...+++|++|++||+|+..
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~ 123 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT 123 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence 999987 667776555544322 1236899999999999864
No 188
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.84 E-value=1.9e-19 Score=152.93 Aligned_cols=154 Identities=17% Similarity=0.182 Sum_probs=110.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc----------ccc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL----------APL 102 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~----------~~~ 102 (202)
.++|+++|.+|||||||+|+|.+........+..+.+.....+.. ....+.++|+||..++... ...
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~---~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFST---TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEc---CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 578999999999999999999987653333333333333333332 2268999999997655321 112
Q ss_pred c--ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC
Q 028884 103 Y--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (202)
Q Consensus 103 ~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 180 (202)
+ ...+|++++|+|+++.+. ...+...+.+ .++|+++++||+|+.+.... ..+..++.+.++++++++|+++
T Consensus 80 ~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e---~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~ 152 (772)
T PRK09554 80 YILSGDADLLINVVDASNLER---NLYLTLQLLE---LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTR 152 (772)
T ss_pred HHhccCCCEEEEEecCCcchh---hHHHHHHHHH---cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeec
Confidence 2 246899999999998533 2223344443 36899999999998755444 3556777888999999999999
Q ss_pred CCCHHHHHHHHHHHcC
Q 028884 181 ADNINQLFEEIAKRLP 196 (202)
Q Consensus 181 ~~~i~~~~~~l~~~i~ 196 (202)
+.|++++++.+.+...
T Consensus 153 g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 153 GRGIEALKLAIDRHQA 168 (772)
T ss_pred CCCHHHHHHHHHHhhh
Confidence 9999999999987653
No 189
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.83 E-value=9e-20 Score=142.74 Aligned_cols=152 Identities=20% Similarity=0.168 Sum_probs=111.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh---------hhhccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------YAALAPLY 103 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 103 (202)
..|+++|.||+|||||.|+|.+....... .+..+.+..+....+.+ ..|.++||+|.+. ........
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~---~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG---REFILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC---ceEEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 57999999999999999999998776554 45566666666666655 4599999999542 23455667
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
+..||++|||+|...+-+.++ ....+.++ ..++|+++|+||+|..+ ......++...-...++.+||.+|.|
T Consensus 81 i~eADvilfvVD~~~Git~~D-~~ia~~Lr---~~~kpviLvvNK~D~~~----~e~~~~efyslG~g~~~~ISA~Hg~G 152 (444)
T COG1160 81 IEEADVILFVVDGREGITPAD-EEIAKILR---RSKKPVILVVNKIDNLK----AEELAYEFYSLGFGEPVPISAEHGRG 152 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHH-HHHHHHHH---hcCCCEEEEEEcccCch----hhhhHHHHHhcCCCCceEeehhhccC
Confidence 888999999999998643322 22223333 23689999999999542 22334444444444699999999999
Q ss_pred HHHHHHHHHHHcC
Q 028884 184 INQLFEEIAKRLP 196 (202)
Q Consensus 184 i~~~~~~l~~~i~ 196 (202)
+.++++.+++.+.
T Consensus 153 i~dLld~v~~~l~ 165 (444)
T COG1160 153 IGDLLDAVLELLP 165 (444)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999973
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.83 E-value=3.5e-19 Score=151.43 Aligned_cols=155 Identities=21% Similarity=0.149 Sum_probs=104.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhcccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAPL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 102 (202)
...+|+++|.+++|||||+|+|++....... .+..+.+.......+.+ ..+.+|||||.+. +......
T Consensus 274 ~~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~---~~~~liDT~G~~~~~~~~~~~~~~~~~~ 350 (712)
T PRK09518 274 AVGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG---TDFKLVDTGGWEADVEGIDSAIASQAQI 350 (712)
T ss_pred cCcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC---EEEEEEeCCCcCCCCccHHHHHHHHHHH
Confidence 4578999999999999999999987542222 23333333332333322 5789999999652 3344556
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
+++.+|++|+|+|++++.... -..|...++. .++|+++|+||+|+.... ......+....+ ..+++||++|.
T Consensus 351 ~~~~aD~iL~VvDa~~~~~~~-d~~i~~~Lr~---~~~pvIlV~NK~D~~~~~---~~~~~~~~lg~~-~~~~iSA~~g~ 422 (712)
T PRK09518 351 AVSLADAVVFVVDGQVGLTST-DERIVRMLRR---AGKPVVLAVNKIDDQASE---YDAAEFWKLGLG-EPYPISAMHGR 422 (712)
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHh---cCCCEEEEEECcccccch---hhHHHHHHcCCC-CeEEEECCCCC
Confidence 788999999999998752211 1234444543 478999999999975421 111112222223 36799999999
Q ss_pred CHHHHHHHHHHHcCC
Q 028884 183 NINQLFEEIAKRLPR 197 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~ 197 (202)
|+.+++++|++.+..
T Consensus 423 GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 423 GVGDLLDEALDSLKV 437 (712)
T ss_pred CchHHHHHHHHhccc
Confidence 999999999998865
No 191
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.83 E-value=2e-19 Score=143.98 Aligned_cols=167 Identities=20% Similarity=0.193 Sum_probs=107.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCC---CCccccceeEEEEE--------------EEe----cCC-----cEE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQT--------------IAL----QDS-----TTV 83 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~--------------~~~----~~~-----~~~ 83 (202)
+++.++|+++|+.++|||||+++|.+...+. ......+....... +.. ... ...
T Consensus 1 ~~~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (406)
T TIGR03680 1 RQPEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLR 80 (406)
T ss_pred CCceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCcccccccccccccccccccccc
Confidence 3568999999999999999999997532211 10001111111000 000 000 135
Q ss_pred EEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--ChHH
Q 028884 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQD 161 (202)
Q Consensus 84 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~ 161 (202)
.+.+||+||++.|...+......+|++++|+|++++....+..+.+..+.... ..|+++++||+|+.+.... ..++
T Consensus 81 ~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~g--i~~iIVvvNK~Dl~~~~~~~~~~~~ 158 (406)
T TIGR03680 81 RVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIG--IKNIVIVQNKIDLVSKEKALENYEE 158 (406)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcC--CCeEEEEEEccccCCHHHHHHHHHH
Confidence 79999999999998877777888999999999997531123333334343332 2468999999998753221 1122
Q ss_pred HHHHHHHc---CCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 162 GIEYAEKN---GMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 162 ~~~~~~~~---~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
...+.... +++++++|+++|.|+++++++|...+..+
T Consensus 159 i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 159 IKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred HHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 33333322 56899999999999999999999877654
No 192
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.83 E-value=2.6e-19 Score=145.02 Aligned_cols=157 Identities=20% Similarity=0.209 Sum_probs=102.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hhh-
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YAA- 98 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~- 98 (202)
...++|+|+|.+|+|||||+|+|++....... .+..+.+.....+... + ..+.+|||||... +..
T Consensus 171 ~~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~-~--~~~~lvDT~G~~~~~~~~~~~e~~~~~ 247 (435)
T PRK00093 171 DEPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD-G--QKYTLIDTAGIRRKGKVTEGVEKYSVI 247 (435)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC-C--eeEEEEECCCCCCCcchhhHHHHHHHH
Confidence 35799999999999999999999986533222 2222222222233332 2 4688999999532 221
Q ss_pred cccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH----HcCCeEE
Q 028884 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE----KNGMFFI 174 (202)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~----~~~~~~~ 174 (202)
....+++.+|++|+|+|++++.+..... ++..+.. .+.|+++|+||+|+.+... ..+....+.. ...++++
T Consensus 248 ~~~~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~---~~~~~ivv~NK~Dl~~~~~-~~~~~~~~~~~l~~~~~~~i~ 322 (435)
T PRK00093 248 RTLKAIERADVVLLVIDATEGITEQDLR-IAGLALE---AGRALVIVVNKWDLVDEKT-MEEFKKELRRRLPFLDYAPIV 322 (435)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH---cCCcEEEEEECccCCCHHH-HHHHHHHHHHhcccccCCCEE
Confidence 1234677899999999999886554432 3333333 3688999999999873321 1111111111 2357899
Q ss_pred EeccCCCCCHHHHHHHHHHHc
Q 028884 175 ETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 175 ~~s~~~~~~i~~~~~~l~~~i 195 (202)
++||+++.|+.++++.+.+..
T Consensus 323 ~~SA~~~~gv~~l~~~i~~~~ 343 (435)
T PRK00093 323 FISALTGQGVDKLLEAIDEAY 343 (435)
T ss_pred EEeCCCCCCHHHHHHHHHHHH
Confidence 999999999999999987644
No 193
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.82 E-value=3.2e-19 Score=151.72 Aligned_cols=157 Identities=19% Similarity=0.208 Sum_probs=106.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChh----------hhhhc-
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----------RYAAL- 99 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~- 99 (202)
..++|+++|.+|+|||||+|+|++..... ...+..+.+.....+.+.+ . .+.+|||||.. .|..+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-~--~~~liDTaG~~~~~~~~~~~e~~~~~r 525 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-E--DWLFIDTAGIKRRQHKLTGAEYYSSLR 525 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-C--EEEEEECCCcccCcccchhHHHHHHHH
Confidence 35899999999999999999999976432 2223333333333444433 3 57799999942 23222
Q ss_pred ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHH-HHHH----cCCeEE
Q 028884 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-YAEK----NGMFFI 174 (202)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~~----~~~~~~ 174 (202)
...+++.+|++++|+|++++.+..... ++..+.. .++|+++|+||+|+.+... .+.... +... ...+++
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~-i~~~~~~---~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii 599 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLK-VMSMAVD---AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRV 599 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEE
Confidence 234578899999999999987766654 3333433 3689999999999865322 111111 1111 134679
Q ss_pred EeccCCCCCHHHHHHHHHHHcCC
Q 028884 175 ETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 175 ~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
++||++|.|+.++++.+.+.+..
T Consensus 600 ~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 600 NLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999888764
No 194
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.82 E-value=4.2e-19 Score=147.18 Aligned_cols=159 Identities=15% Similarity=0.230 Sum_probs=112.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC--CCCCCC--------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG--QFDPTS--------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~--~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
-+|+++|+.++|||||+++|+.. .+.... ...++.......+.+. . +.+.+|||||+..|.
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~--~-~kinlIDTPGh~DF~ 78 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYN--G-TKINIVDTPGHADFG 78 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEEC--C-EEEEEEECCCHHHHH
Confidence 37999999999999999999863 221111 1112222222233332 2 789999999999999
Q ss_pred hcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC-ChHHHHHHHH-------Hc
Q 028884 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAE-------KN 169 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~ 169 (202)
..+..+++.+|++++|+|+.+.. ..+...|+..+... ++|+++|+||+|+...... ...+...+.. ..
T Consensus 79 ~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~---~ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l 154 (594)
T TIGR01394 79 GEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALEL---GLKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQL 154 (594)
T ss_pred HHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHC---CCCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccc
Confidence 88899999999999999998753 34455666665543 6889999999998653321 1223333332 23
Q ss_pred CCeEEEeccCCCC----------CHHHHHHHHHHHcCCCC
Q 028884 170 GMFFIETSAKTAD----------NINQLFEEIAKRLPRPS 199 (202)
Q Consensus 170 ~~~~~~~s~~~~~----------~i~~~~~~l~~~i~~~~ 199 (202)
.++++.+|+++|. |+..+|+.|++.+..+.
T Consensus 155 ~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 155 DFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred cCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 5679999999996 79999999999998764
No 195
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.2e-20 Score=126.79 Aligned_cols=162 Identities=22% Similarity=0.271 Sum_probs=120.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCC---CC----CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF---DP----TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL 102 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~ 102 (202)
.+....|+++|..++|||||+.++..... .. ...++.+.......+ . ...+.+||..|++..+++|..
T Consensus 14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v--~---~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 14 KKEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV--C---NAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee--c---cceeEEEEcCChHHHHHHHHH
Confidence 34578899999999999999987764221 11 112233333322222 2 257999999999999999999
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHH-HHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHH---HH---HcCCeEEE
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKEL-QKHGSPDIVMALVGNKADLHEKREVPAQDGIEY---AE---KNGMFFIE 175 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~---~~---~~~~~~~~ 175 (202)
|+..++++|++||+++++.|+.....++.+ ......++|+++.+||.|+.+.... ++.... +. ...+++.+
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~--~El~~~~~~~e~~~~rd~~~~p 166 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEA--AELDGVFGLAELIPRRDNPFQP 166 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhhH--HHHHHHhhhhhhcCCccCcccc
Confidence 999999999999999998888776555554 3345568999999999998664332 222221 22 23567999
Q ss_pred eccCCCCCHHHHHHHHHHHcCCC
Q 028884 176 TSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+|+.+|+|+++...|++..+.++
T Consensus 167 vSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 167 VSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred chhhhcccHHHHHHHHHHHHhhc
Confidence 99999999999999999998877
No 196
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.82 E-value=6.1e-19 Score=141.19 Aligned_cols=169 Identities=20% Similarity=0.191 Sum_probs=106.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC---ccccceeEEEEEEEe------------------c--C---Cc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS---KVTVGASFLSQTIAL------------------Q--D---ST 81 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---~~~~~~~~~~~~~~~------------------~--~---~~ 81 (202)
+++++.++|+++|+.++|||||+.+|.+...+... ....+.........+ . + ..
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 34567899999999999999999999653211111 111111111000000 0 0 01
Q ss_pred EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC--h
Q 028884 82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--A 159 (202)
Q Consensus 82 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~ 159 (202)
...+.+||+||++.|..........+|++++|+|++++....+....+..+.... ..|+++|+||+|+.+..... .
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~--i~~iiVVlNK~Dl~~~~~~~~~~ 161 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIG--IKNIVIVQNKIDLVSKERALENY 161 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEEeeccccchhHHHHH
Confidence 2578999999999887666656667899999999996531111122222233221 24689999999986543211 1
Q ss_pred HHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 160 QDGIEYAEK---NGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 160 ~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
++...+... ...+++++|++++.|++++++.|.+.+..+
T Consensus 162 ~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 162 EQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred HHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 223333332 246799999999999999999999987654
No 197
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.82 E-value=4.2e-19 Score=143.23 Aligned_cols=151 Identities=17% Similarity=0.116 Sum_probs=100.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCCC-----------------------------CCccccceeEEEEEEEecC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDP-----------------------------TSKVTVGASFLSQTIALQD 79 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 79 (202)
.+.++|+++|+.++|||||+++|+.. .... ......+.+.....+..
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-- 82 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-- 82 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc--
Confidence 46799999999999999999999862 1110 01122333333333332
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHH--HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC-
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNK--AQYWVKELQKHGSPDIVMALVGNKADLHEKRE- 156 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~- 156 (202)
+ .+.+.+||+||++.|.......+..+|++++|+|+++++++.. ...++...... ...|++|++||+|+.+...
T Consensus 83 ~-~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~ 159 (426)
T TIGR00483 83 D-KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEE 159 (426)
T ss_pred C-CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHH
Confidence 2 2789999999999887666667788999999999998743211 12222222222 2357999999999864221
Q ss_pred ---CChHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 028884 157 ---VPAQDGIEYAEKNG-----MFFIETSAKTADNINQ 186 (202)
Q Consensus 157 ---~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 186 (202)
....+...+++..+ ++++++||++|.|+.+
T Consensus 160 ~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 160 EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK 197 (426)
T ss_pred HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence 11234455555554 5799999999999985
No 198
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.81 E-value=1.8e-18 Score=119.79 Aligned_cols=157 Identities=22% Similarity=0.302 Sum_probs=113.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-------cc---cceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-------VT---VGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA 100 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 100 (202)
-...+|+|.|+.++||||+++++.......... .. .+.....-...+.++ ..+++++|||++++..+|
T Consensus 8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~--~~v~LfgtPGq~RF~fm~ 85 (187)
T COG2229 8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDED--TGVHLFGTPGQERFKFMW 85 (187)
T ss_pred ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCc--ceEEEecCCCcHHHHHHH
Confidence 467899999999999999999999865311110 00 111111111222221 479999999999999999
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH--cCCeEEEecc
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK--NGMFFIETSA 178 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~ 178 (202)
..+.++++++|+++|.+.+..+ .....+..+... ++ +|++|++||.|+...... +..++.... ...+++++++
T Consensus 86 ~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~-~~-ip~vVa~NK~DL~~a~pp--e~i~e~l~~~~~~~~vi~~~a 160 (187)
T COG2229 86 EILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR-NP-IPVVVAINKQDLFDALPP--EKIREALKLELLSVPVIEIDA 160 (187)
T ss_pred HHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc-cC-CCEEEEeeccccCCCCCH--HHHHHHHHhccCCCceeeeec
Confidence 9999999999999999998777 334444444433 22 999999999999775443 344443333 3888999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 028884 179 KTADNINQLFEEIAKR 194 (202)
Q Consensus 179 ~~~~~i~~~~~~l~~~ 194 (202)
.++++..+.++.+...
T Consensus 161 ~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 161 TEGEGARDQLDVLLLK 176 (187)
T ss_pred ccchhHHHHHHHHHhh
Confidence 9999999999998877
No 199
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.81 E-value=2.1e-18 Score=124.88 Aligned_cols=156 Identities=13% Similarity=0.115 Sum_probs=99.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFD----------------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 96 (202)
.++|+++|+.++|||||+++|++.... .......+.... ...+..+ ...+.++||||+..|
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~-~~~i~~iDtPG~~~~ 78 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTA--HVEYETA-NRHYAHVDCPGHADY 78 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEee--eeEecCC-CeEEEEEECcCHHHH
Confidence 589999999999999999999864100 000112222222 2222222 257899999999888
Q ss_pred hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCC---ChHHHHHHHHHc---
Q 028884 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKN--- 169 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~--- 169 (202)
.......+..+|++++|+|+..+.. ......+..+... ++| +++++||+|+...... ...+...+....
T Consensus 79 ~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~~---~~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~ 154 (195)
T cd01884 79 IKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQV---GVPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFD 154 (195)
T ss_pred HHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhccc
Confidence 7777777889999999999987532 2223344444443 455 7788999998643221 112333343333
Q ss_pred --CCeEEEeccCCCCCH----------HHHHHHHHHHc
Q 028884 170 --GMFFIETSAKTADNI----------NQLFEEIAKRL 195 (202)
Q Consensus 170 --~~~~~~~s~~~~~~i----------~~~~~~l~~~i 195 (202)
.++++++|+++|.|+ ..+++.|...+
T Consensus 155 ~~~v~iipiSa~~g~n~~~~~~w~~~~~~l~~~l~~~~ 192 (195)
T cd01884 155 GDNTPIVRGSALKALEGDDPNKWVKKILELLDALDSYI 192 (195)
T ss_pred ccCCeEEEeeCccccCCCCCCcchhcHhHHHHHHHhCC
Confidence 367999999999884 45666655443
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.81 E-value=3.1e-18 Score=127.43 Aligned_cols=152 Identities=20% Similarity=0.185 Sum_probs=100.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcccccccCc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALAPLYYRGA 107 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~~~~~~ 107 (202)
+|+++|.+|+|||||+++|.+........+..+.......+.+.+ ..+++||+||..+.. .....+++.+
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~---~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~a 78 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG---AKIQLLDLPGIIEGAADGKGRGRQVIAVARTA 78 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCCCccccceEEEEEECC---eEEEEEECCCcccccccchhHHHHHHHhhccC
Confidence 789999999999999999998653222222222222233333333 579999999964321 2334568899
Q ss_pred cEEEEEEeCCChh-HHHHHHHHHHHH-----------------------------------------HH-----------
Q 028884 108 AVAVVVYDITSPD-SFNKAQYWVKEL-----------------------------------------QK----------- 134 (202)
Q Consensus 108 d~~i~v~d~~~~~-s~~~~~~~~~~i-----------------------------------------~~----------- 134 (202)
|++++|+|++++. ....+...++.. ..
T Consensus 79 d~il~V~D~t~~~~~~~~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~~~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEecCCcchhHHHHHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEEEc
Confidence 9999999998764 333333333210 00
Q ss_pred -------------cCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 135 -------------HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 135 -------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
-....+|+++|+||+|+.. .++...++.. ..++++||+++.|++++|+.|++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred cCCCHHHHHHHHhCCceEeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHhC
Confidence 0012478999999999753 2333344433 35899999999999999999998764
No 201
>PRK10218 GTP-binding protein; Provisional
Probab=99.81 E-value=2.1e-18 Score=142.95 Aligned_cols=163 Identities=17% Similarity=0.235 Sum_probs=114.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh--CCCCCCC------------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR--GQFDPTS------------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
..-+|+++|+.++|||||+++|+. +.+.... ..+.+..+......+..+. +.+.+|||||+..|.
T Consensus 4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~-~~inliDTPG~~df~ 82 (607)
T PRK10218 4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND-YRINIVDTPGHADFG 82 (607)
T ss_pred CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC-EEEEEEECCCcchhH
Confidence 457899999999999999999997 3222111 1122333333333333333 789999999999999
Q ss_pred hcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC-ChHHHHHHHH-------Hc
Q 028884 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAE-------KN 169 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~-------~~ 169 (202)
..+..+++.+|++|+|+|+.+.... +...++..+.. .++|.++++||+|+...... ..++...+.. ..
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~-qt~~~l~~a~~---~gip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~ 158 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMP-QTRFVTKKAFA---YGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccH-HHHHHHHHHHH---cCCCEEEEEECcCCCCCchhHHHHHHHHHHhccCcccccc
Confidence 9999999999999999999876322 23333343333 36889999999998653221 1223333321 13
Q ss_pred CCeEEEeccCCCC----------CHHHHHHHHHHHcCCCC
Q 028884 170 GMFFIETSAKTAD----------NINQLFEEIAKRLPRPS 199 (202)
Q Consensus 170 ~~~~~~~s~~~~~----------~i~~~~~~l~~~i~~~~ 199 (202)
.++++.+|+++|. ++..+++.|++.+..+.
T Consensus 159 ~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred CCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 4679999999998 58999999999998774
No 202
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.81 E-value=2.2e-18 Score=128.16 Aligned_cols=170 Identities=17% Similarity=0.154 Sum_probs=115.0
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------- 95 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------- 95 (202)
..+..++.++|+|+|+||+|||||.|.+.+.+..+......++.-...-+.. .+. .++.|+||||.-.
T Consensus 65 de~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~t-s~e-TQlvf~DTPGlvs~~~~r~~~l~ 142 (379)
T KOG1423|consen 65 DEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIIT-SGE-TQLVFYDTPGLVSKKMHRRHHLM 142 (379)
T ss_pred CchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEe-cCc-eEEEEecCCcccccchhhhHHHH
Confidence 3456688999999999999999999999999998888776665444433333 333 6999999999321
Q ss_pred --hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC-------------CC--
Q 028884 96 --YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-------------VP-- 158 (202)
Q Consensus 96 --~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-------------~~-- 158 (202)
+-......+..||.+++++|++++...-. ...+..+... .++|-++|.||.|...... ..
T Consensus 143 ~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y--s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~ 219 (379)
T KOG1423|consen 143 MSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY--SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKL 219 (379)
T ss_pred HHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH--hcCCceeeccchhcchhhhHHhhhHHhccccccchh
Confidence 11223345677999999999996422111 2233333333 3788999999999764321 11
Q ss_pred hHHHHHHHHH----------cCC----eEEEeccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 159 AQDGIEYAEK----------NGM----FFIETSAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 159 ~~~~~~~~~~----------~~~----~~~~~s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
..+.++.... .++ .+|.+||+.|+|++++-++|...+....+
T Consensus 220 kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW 275 (379)
T KOG1423|consen 220 KLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPW 275 (379)
T ss_pred hhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCC
Confidence 1111111111 112 38999999999999999999998887654
No 203
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.81 E-value=6.9e-19 Score=141.98 Aligned_cols=152 Identities=19% Similarity=0.159 Sum_probs=98.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCC-------------------------------CCccccceeEEEEEEEec
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-------------------------------TSKVTVGASFLSQTIALQ 78 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 78 (202)
.++.++|+++|++++|||||+++|+...-.. ......+.+.....+..
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 3568999999999999999999998532110 01222333333333332
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHH-HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC-
Q 028884 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHEKRE- 156 (202)
Q Consensus 79 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~- 156 (202)
+ .+.+.+|||||++.|.......+..+|++++|+|++++..+. ....++..+.... ..|+++++||+|+.....
T Consensus 82 -~-~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~ 157 (425)
T PRK12317 82 -D-KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLG--INQLIVAINKMDAVNYDEK 157 (425)
T ss_pred -C-CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcC--CCeEEEEEEccccccccHH
Confidence 2 268999999999887655555578899999999999731222 2223333333321 246899999999865221
Q ss_pred ---CChHHHHHHHHHcC-----CeEEEeccCCCCCHHH
Q 028884 157 ---VPAQDGIEYAEKNG-----MFFIETSAKTADNINQ 186 (202)
Q Consensus 157 ---~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~ 186 (202)
...++...+....+ .+++++||++|.|+.+
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVK 195 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccc
Confidence 11233444444444 5699999999999986
No 204
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.81 E-value=1.5e-18 Score=144.48 Aligned_cols=157 Identities=15% Similarity=0.110 Sum_probs=106.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC---CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
-|.++|+.++|||||+++|.+.. +.......++.+.....+...++ ..+.+||+||++.|.......+..+|+++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~l 79 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHAL 79 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEEE
Confidence 57899999999999999999743 22222234444443333333333 35899999999998776667788899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCC--ChHHHHHHHHHcC---CeEEEeccCCCCCHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV--PAQDGIEYAEKNG---MFFIETSAKTADNIN 185 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~---~~~~~~s~~~~~~i~ 185 (202)
+|+|++++.. .+..+.+..+... ++| ++||+||+|+.+.... ..++...+....+ .+++++|+++|.|++
T Consensus 80 LVVda~eg~~-~qT~ehl~il~~l---gi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~ 155 (614)
T PRK10512 80 LVVACDDGVM-AQTREHLAILQLT---GNPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGID 155 (614)
T ss_pred EEEECCCCCc-HHHHHHHHHHHHc---CCCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCH
Confidence 9999987522 2223334444433 344 5799999998653221 1233344444433 679999999999999
Q ss_pred HHHHHHHHHcCC
Q 028884 186 QLFEEIAKRLPR 197 (202)
Q Consensus 186 ~~~~~l~~~i~~ 197 (202)
++++.|.+....
T Consensus 156 ~L~~~L~~~~~~ 167 (614)
T PRK10512 156 ALREHLLQLPER 167 (614)
T ss_pred HHHHHHHHhhcc
Confidence 999999876544
No 205
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.81 E-value=5.4e-19 Score=129.63 Aligned_cols=146 Identities=23% Similarity=0.203 Sum_probs=91.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCC-------------------------------CccccceeEEEEEEEecCCcEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPT-------------------------------SKVTVGASFLSQTIALQDSTTV 83 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~ 83 (202)
||+++|++++|||||+++|+...-... .....+.+.....+.+. ..
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~---~~ 77 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTP---KR 77 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecC---Cc
Confidence 689999999999999999976321111 00112222222222222 24
Q ss_pred EEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC----Ch
Q 028884 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV----PA 159 (202)
Q Consensus 84 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~----~~ 159 (202)
.+.+|||||++.|.......++.+|++|+|+|++++..-. .......+.... ..++++|+||+|+.+.... ..
T Consensus 78 ~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~-~~~~~~~~~~~~--~~~iIvviNK~D~~~~~~~~~~~i~ 154 (208)
T cd04166 78 KFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQ-TRRHSYILSLLG--IRHVVVAVNKMDLVDYSEEVFEEIV 154 (208)
T ss_pred eEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHh-HHHHHHHHHHcC--CCcEEEEEEchhcccCCHHHHHHHH
Confidence 7889999999888666666788999999999998763222 222222222221 2347888999998643211 11
Q ss_pred HHHHHHHHHcC---CeEEEeccCCCCCHHH
Q 028884 160 QDGIEYAEKNG---MFFIETSAKTADNINQ 186 (202)
Q Consensus 160 ~~~~~~~~~~~---~~~~~~s~~~~~~i~~ 186 (202)
.+...+....+ .+++++||++|.|+.+
T Consensus 155 ~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~ 184 (208)
T cd04166 155 ADYLAFAAKLGIEDITFIPISALDGDNVVS 184 (208)
T ss_pred HHHHHHHHHcCCCCceEEEEeCCCCCCCcc
Confidence 23344444555 3589999999999875
No 206
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.80 E-value=1.9e-18 Score=142.90 Aligned_cols=154 Identities=18% Similarity=0.162 Sum_probs=100.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccc----eeEEEEEEEec--C----CcE-----EEEEEEeCCChhhhh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVG----ASFLSQTIALQ--D----STT-----VKFEIWDTAGQERYA 97 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~----~~~~~~~~~~~--~----~~~-----~~~~i~D~~G~~~~~ 97 (202)
..-|+++|++++|||||+++|.+..+........+ ........... . ... ..+.+|||||++.|.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~ 83 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFT 83 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHH
Confidence 45699999999999999999998765433222111 11111110000 0 000 138899999999999
Q ss_pred hcccccccCccEEEEEEeCCCh---hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC------------ChHH-
Q 028884 98 ALAPLYYRGAAVAVVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV------------PAQD- 161 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~------------~~~~- 161 (202)
.++..+++.+|++++|+|+++. .+++.+ ..+.. .++|+++++||+|+...... ....
T Consensus 84 ~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i----~~l~~---~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v 156 (590)
T TIGR00491 84 NLRKRGGALADLAILIVDINEGFKPQTQEAL----NILRM---YKTPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQV 156 (590)
T ss_pred HHHHHHHhhCCEEEEEEECCcCCCHhHHHHH----HHHHH---cCCCEEEEEECCCccchhhhccCchHHHHHHhhhHHH
Confidence 9888899999999999999974 333322 22222 36899999999998642110 0000
Q ss_pred -----------HHHHHHH--------------cCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 162 -----------GIEYAEK--------------NGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 162 -----------~~~~~~~--------------~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
..++... ...+++++||++|+|+++++.+|..
T Consensus 157 ~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~ 213 (590)
T TIGR00491 157 QQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAG 213 (590)
T ss_pred HHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHH
Confidence 0011110 1357999999999999999998864
No 207
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.80 E-value=1.6e-21 Score=134.50 Aligned_cols=170 Identities=28% Similarity=0.532 Sum_probs=144.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
+.-..+++|+|.-|+|||+++.++....+...+..+++.++..+...+.+...+++++||..|++++..+.+.|++.+.+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 45689999999999999999999999888888888888888777777777777899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCCCC-hHHHHHHHHHcCCe-EEEeccCCCCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKNGMF-FIETSAKTADN 183 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~~~-~~~~s~~~~~~ 183 (202)
.++|||.++..+|+....|.+.+-.. .....|+++..||||........ ......++++++.. .+++|++.+.|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 99999999999999999999876432 23357789999999965432222 35667788888765 99999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 028884 184 INQLFEEIAKRLPRPS 199 (202)
Q Consensus 184 i~~~~~~l~~~i~~~~ 199 (202)
++++-..|++++..+.
T Consensus 182 i~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 182 IPEAQRELVEKILVND 197 (229)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999999987654
No 208
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.4e-18 Score=137.83 Aligned_cols=171 Identities=19% Similarity=0.191 Sum_probs=129.3
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCC---------------CCCCccccceeEEEEEEEecCCcEEEEEEEeC
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF---------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 90 (202)
...+.++.-|+.|+.+...|||||..+|+..-- .......++.......+.+.++..+.++++||
T Consensus 53 ~~~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDT 132 (650)
T KOG0462|consen 53 SLDPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDT 132 (650)
T ss_pred ccCchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecC
Confidence 334556788999999999999999999986311 11122334444444445555577789999999
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC-hHHHHHHHHHc
Q 028884 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKN 169 (202)
Q Consensus 91 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~ 169 (202)
||+..|.....+.+..+|++|+|+|++.+-.-+....++..+.. +..+|.|+||+|++..+... ..+........
T Consensus 133 PGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~----~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~ 208 (650)
T KOG0462|consen 133 PGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEA----GLAIIPVLNKIDLPSADPERVENQLFELFDIP 208 (650)
T ss_pred CCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHc----CCeEEEeeeccCCCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999998655666666666643 67799999999987654322 23333344445
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 170 GMFFIETSAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 170 ~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
..+++.+||++|.|+.++++++++.++.|+-
T Consensus 209 ~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 209 PAEVIYVSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred ccceEEEEeccCccHHHHHHHHHhhCCCCCC
Confidence 5579999999999999999999999998864
No 209
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.80 E-value=6.9e-19 Score=116.39 Aligned_cols=159 Identities=18% Similarity=0.256 Sum_probs=118.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.++++|+++|-.++|||||+..|.+... ....++.+.. .+.+.+ .+. +.+.+||.+|+...+..|..|+.+.|++
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~-~hltpT~GFn--~k~v~~-~g~-f~LnvwDiGGqr~IRpyWsNYyenvd~l 89 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDP-RHLTPTNGFN--TKKVEY-DGT-FHLNVWDIGGQRGIRPYWSNYYENVDGL 89 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCCh-hhccccCCcc--eEEEee-cCc-EEEEEEecCCccccchhhhhhhhccceE
Confidence 5789999999999999999999988553 2223344443 333433 233 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHH-HHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKEL-QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i-~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i 184 (202)
|||+|.++..-|+++.+.+-.+ ....-..+|+.+..||.|+.....+ ++...... .....+-+||+..++++
T Consensus 90 IyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~--eeia~klnl~~lrdRswhIq~csals~eg~ 167 (185)
T KOG0074|consen 90 IYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV--EEIALKLNLAGLRDRSWHIQECSALSLEGS 167 (185)
T ss_pred EEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcch--HHHHHhcchhhhhhceEEeeeCccccccCc
Confidence 9999999988888886655444 4445567999999999997654322 22222111 22345788999999999
Q ss_pred HHHHHHHHHHcC
Q 028884 185 NQLFEEIAKRLP 196 (202)
Q Consensus 185 ~~~~~~l~~~i~ 196 (202)
.+-.+|+.....
T Consensus 168 ~dg~~wv~sn~~ 179 (185)
T KOG0074|consen 168 TDGSDWVQSNPE 179 (185)
T ss_pred cCcchhhhcCCC
Confidence 999999877655
No 210
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.80 E-value=3.1e-18 Score=121.03 Aligned_cols=151 Identities=22% Similarity=0.244 Sum_probs=95.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----------hhhhcccccc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----------RYAALAPLYY 104 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~~~~~~~~ 104 (202)
.|+++|.+|+|||||++.+.++........+.+.......+.... .+.+||+||.. .+......++
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVND----KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccC----eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 489999999999999999996544444443333333222232221 79999999942 2333333333
Q ss_pred c---CccEEEEEEeCCChhH--HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC--hHHHHHHHH--HcCCeEEE
Q 028884 105 R---GAAVAVVVYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAE--KNGMFFIE 175 (202)
Q Consensus 105 ~---~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~--~~~~~~~~ 175 (202)
. ..+++++++|.....+ ...+.+|+. .. +.|+++++||+|+....... ........+ ....++++
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~---~~---~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLE---EL---GIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIIL 150 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHH---Hc---CCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEE
Confidence 3 3578899999986532 222333333 22 57899999999985432211 112222222 34567999
Q ss_pred eccCCCCCHHHHHHHHHHHc
Q 028884 176 TSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~i 195 (202)
+|++++.++.+++++|.+.+
T Consensus 151 ~Sa~~~~~~~~l~~~l~~~~ 170 (170)
T cd01876 151 FSSLKGQGIDELRALIEKWL 170 (170)
T ss_pred EecCCCCCHHHHHHHHHHhC
Confidence 99999999999999998764
No 211
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=9e-18 Score=125.16 Aligned_cols=112 Identities=14% Similarity=0.099 Sum_probs=78.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCC------------------CccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPT------------------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 96 (202)
+|+++|+.|+|||||+++|+...-... .....+.......+.+ +. ..+.+|||||+..|
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~--~~-~~i~liDTPG~~~f 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW--ED-TKVNLIDTPGHMDF 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE--CC-EEEEEEeCCCccch
Confidence 589999999999999999986321000 0001111122222222 22 68999999999998
Q ss_pred hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
...+..+++.+|++++|+|.+++... ....++..+... ++|+++++||+|+..
T Consensus 78 ~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~~---~~P~iivvNK~D~~~ 130 (237)
T cd04168 78 IAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRKL---NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHHc---CCCEEEEEECccccC
Confidence 88888899999999999999987433 334555555443 688999999999863
No 212
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=1.8e-18 Score=127.41 Aligned_cols=159 Identities=17% Similarity=0.176 Sum_probs=101.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCC-----------------ccc--cceeEEEEEEEec--CCcEEEEEEEeCCCh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------------KVT--VGASFLSQTIALQ--DSTTVKFEIWDTAGQ 93 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------------~~~--~~~~~~~~~~~~~--~~~~~~~~i~D~~G~ 93 (202)
+|+|+|+.++|||||+++|+........ ... .+.......+.+. ++..+.+.+|||||+
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999875432210 000 1111111112121 244588999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC-CC-----------hHH
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VP-----------AQD 161 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-~~-----------~~~ 161 (202)
..+......++..+|++++|+|+.+..+... ..++..... .+.|+++|+||+|+...+. .. ..+
T Consensus 82 ~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~---~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~ 157 (213)
T cd04167 82 VNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL---EGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDE 157 (213)
T ss_pred cchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHH
Confidence 9888788888899999999999987755432 344444433 2589999999999752110 00 111
Q ss_pred HHHHHHHcC-------Ce----EEEeccCCCCCHH--------HHHHHHHHHcCC
Q 028884 162 GIEYAEKNG-------MF----FIETSAKTADNIN--------QLFEEIAKRLPR 197 (202)
Q Consensus 162 ~~~~~~~~~-------~~----~~~~s~~~~~~i~--------~~~~~l~~~i~~ 197 (202)
....+.... .| +++.|++.++.+. .+++.|.+.+..
T Consensus 158 ~n~~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 212 (213)
T cd04167 158 VNNIIASFSTTLSFLFSPENGNVCFASSKFGFCFTLESFAKKYGLVDSIVSNIPS 212 (213)
T ss_pred HHHHHHHhcCCCceEeccCCCeEEEEecCCCeEEecHHHHhhhhHHHHHHhhCCC
Confidence 122222222 22 6788999998776 777777776654
No 213
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=7.6e-19 Score=121.76 Aligned_cols=163 Identities=30% Similarity=0.567 Sum_probs=137.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...++++++|..|.||||++++.+.+.+...+.++.+.......+....+ .+++..|||.|++.+..+..-++=.+..+
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g-~irf~~wdtagqEk~gglrdgyyI~~qcA 86 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRG-QIRFNVWDTAGQEKKGGLRDGYYIQGQCA 86 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccC-cEEEEeeecccceeecccccccEEeccee
Confidence 35799999999999999999999999999999998888886655554444 59999999999999998888888889999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|++||.....++..+..|...+.+.+. ++|+++.+||.|..... .......+.+...+.+|++|++.+.|...-|.|
T Consensus 87 iimFdVtsr~t~~n~~rwhrd~~rv~~-NiPiv~cGNKvDi~~r~--~k~k~v~~~rkknl~y~~iSaksn~NfekPFl~ 163 (216)
T KOG0096|consen 87 IIMFDVTSRFTYKNVPRWHRDLVRVRE-NIPIVLCGNKVDIKARK--VKAKPVSFHRKKNLQYYEISAKSNYNFERPFLW 163 (216)
T ss_pred EEEeeeeehhhhhcchHHHHHHHHHhc-CCCeeeeccceeccccc--cccccceeeecccceeEEeecccccccccchHH
Confidence 999999999999999999999887754 49999999999964332 233444555667788999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
++..+--
T Consensus 164 LarKl~G 170 (216)
T KOG0096|consen 164 LARKLTG 170 (216)
T ss_pred HhhhhcC
Confidence 9987643
No 214
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=4e-18 Score=133.55 Aligned_cols=157 Identities=21% Similarity=0.198 Sum_probs=108.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----------c
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-----------L 99 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----------~ 99 (202)
..++|+++|.|++|||||+|++++.+.....+.. .+.+.....+.+.+ ..+.++||.|..+-.. .
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~---~~~~liDTAGiRrk~ki~e~~E~~Sv~r 253 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG---RKYVLIDTAGIRRKGKITESVEKYSVAR 253 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC---eEEEEEECCCCCcccccccceEEEeehh
Confidence 5799999999999999999999998765444432 33333344444433 4799999999543211 1
Q ss_pred ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-----cCCeEE
Q 028884 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFI 174 (202)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~ 174 (202)
....+..+|++++|+|++.+.+-+. .+....+. ..+.+++||+||+|+.+......++....... ...+++
T Consensus 254 t~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~---~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~ 329 (444)
T COG1160 254 TLKAIERADVVLLVIDATEGISEQD-LRIAGLIE---EAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIV 329 (444)
T ss_pred hHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHH---HcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEE
Confidence 2334667999999999999854333 22333333 34678999999999987643433333332222 356799
Q ss_pred EeccCCCCCHHHHHHHHHHHc
Q 028884 175 ETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 175 ~~s~~~~~~i~~~~~~l~~~i 195 (202)
++||+++.++..+|+.+.+..
T Consensus 330 ~iSA~~~~~i~~l~~~i~~~~ 350 (444)
T COG1160 330 FISALTGQGLDKLFEAIKEIY 350 (444)
T ss_pred EEEecCCCChHHHHHHHHHHH
Confidence 999999999999999887653
No 215
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.78 E-value=2.7e-18 Score=134.84 Aligned_cols=161 Identities=22% Similarity=0.258 Sum_probs=114.3
Q ss_pred CCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-----
Q 028884 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA----- 98 (202)
Q Consensus 25 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----- 98 (202)
..+.-....++++++|.||+|||||+|.|.+.......+. ..+-+.-...+.+.+ +.+.++||.|..+...
T Consensus 209 ~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G---~pv~l~DTAGiRet~d~VE~i 285 (454)
T COG0486 209 KQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG---IPVRLVDTAGIRETDDVVERI 285 (454)
T ss_pred hhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC---EEEEEEecCCcccCccHHHHH
Confidence 3444456689999999999999999999999887666554 344455555666655 7899999999654221
Q ss_pred ---cccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEE
Q 028884 99 ---LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE 175 (202)
Q Consensus 99 ---~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (202)
.....++.||.+++|+|.+.+.+-.. ...+. ....++|+++|.||.|+..+...... ....+.+++.
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d-~~~~~----~~~~~~~~i~v~NK~DL~~~~~~~~~-----~~~~~~~~i~ 355 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQPLDKED-LALIE----LLPKKKPIIVVLNKADLVSKIELESE-----KLANGDAIIS 355 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCchhh-HHHHH----hcccCCCEEEEEechhcccccccchh-----hccCCCceEE
Confidence 23345778999999999999632222 11222 22457889999999999876542211 1223446899
Q ss_pred eccCCCCCHHHHHHHHHHHcCCC
Q 028884 176 TSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+|++++.|++.+.+.|.+.+...
T Consensus 356 iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 356 ISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred EEecCccCHHHHHHHHHHHHhhc
Confidence 99999999999999998876543
No 216
>PRK12736 elongation factor Tu; Reviewed
Probab=99.78 E-value=1.5e-17 Score=132.67 Aligned_cols=162 Identities=15% Similarity=0.168 Sum_probs=107.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD----------------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
.++.++|+++|+.++|||||+++|++.... .......+.+. ....+..+. ..+.++|+||+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~--~~~~~~~~~-~~i~~iDtPGh 85 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINT--AHVEYETEK-RHYAHVDCPGH 85 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEE--EeeEecCCC-cEEEEEECCCH
Confidence 456899999999999999999999863110 00112222222 222332222 57899999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCCC---hHHHHHHHHHc
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVP---AQDGIEYAEKN 169 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~---~~~~~~~~~~~ 169 (202)
++|.......+..+|++++|+|+..+.. .+..+.+..+... ++| +++++||+|+.+..+.. ..+...+....
T Consensus 86 ~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~~---g~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~ 161 (394)
T PRK12736 86 ADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYLVVFLNKVDLVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHh
Confidence 9887666666778999999999987532 2223344444433 567 67889999986432211 12333444444
Q ss_pred C-----CeEEEeccCCCC--------CHHHHHHHHHHHcCCC
Q 028884 170 G-----MFFIETSAKTAD--------NINQLFEEIAKRLPRP 198 (202)
Q Consensus 170 ~-----~~~~~~s~~~~~--------~i~~~~~~l~~~i~~~ 198 (202)
+ .+++++|+++|. ++.++++.|.+.+..+
T Consensus 162 ~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~ 203 (394)
T PRK12736 162 DFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP 203 (394)
T ss_pred CCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC
Confidence 3 579999999983 6889999998887644
No 217
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=2e-19 Score=119.20 Aligned_cols=162 Identities=22% Similarity=0.356 Sum_probs=117.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+..+|+++|..|+||++++-++.-+... ...|+++.. ..++.+.+ ..+++||..|+-..+..|+.|+.+.|++|
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevv-ttkPtigfn--ve~v~yKN---Lk~~vwdLggqtSirPyWRcYy~dt~avI 90 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVV-TTKPTIGFN--VETVPYKN---LKFQVWDLGGQTSIRPYWRCYYADTDAVI 90 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccc-ccCCCCCcC--cccccccc---ccceeeEccCcccccHHHHHHhcccceEE
Confidence 6899999999999999999888766542 223333333 33343333 78999999999999999999999999999
Q ss_pred EEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC---CChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 112 VVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEKRE---VPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 112 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
+|+|.++.+..... ..++..++..+-.+..++|++||.|...... +.........+..-+.++.+||..|.|++.+
T Consensus 91 yVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~ 170 (182)
T KOG0072|consen 91 YVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPA 170 (182)
T ss_pred EEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEEEeeccccccCCcHH
Confidence 99999998655433 3344444444455677899999999754321 1111122222333467999999999999999
Q ss_pred HHHHHHHcCCCC
Q 028884 188 FEEIAKRLPRPS 199 (202)
Q Consensus 188 ~~~l~~~i~~~~ 199 (202)
.+||.+.+++++
T Consensus 171 ~DWL~~~l~~~~ 182 (182)
T KOG0072|consen 171 MDWLQRPLKSRQ 182 (182)
T ss_pred HHHHHHHHhccC
Confidence 999999887653
No 218
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.78 E-value=1.6e-17 Score=117.52 Aligned_cols=161 Identities=20% Similarity=0.202 Sum_probs=108.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA 98 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 98 (202)
+.+....|+++|.+|+|||||||+|++++.......+++.+...-.+.+.+ .+.++|.|| .+.+..
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~----~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDD----ELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecC----cEEEEeCCCcccccCCHHHHHHHHH
Confidence 334678999999999999999999999774444444555555444455443 388999999 344555
Q ss_pred cccccccC---ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCCh--HHHH-HHHHHcCCe
Q 028884 99 LAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--QDGI-EYAEKNGMF 172 (202)
Q Consensus 99 ~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~-~~~~~~~~~ 172 (202)
+...|++. -.++++++|+..+-.-.+ .+.++.+... ++|++|++||+|.....+... .... .+.......
T Consensus 96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~~---~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~ 171 (200)
T COG0218 96 LIEEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLEL---GIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDD 171 (200)
T ss_pred HHHHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHHc---CCCeEEEEEccccCChhHHHHHHHHHHHHhcCCCCcc
Confidence 56666654 358888999987632211 3444445543 789999999999877543321 1111 111122222
Q ss_pred --EEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 173 --FIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 173 --~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
++..|+..+.|++++.+.|.+.+.+
T Consensus 172 ~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 172 QWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred ceEEEEecccccCHHHHHHHHHHHhhc
Confidence 7888999999999999999988765
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.77 E-value=1.9e-17 Score=137.40 Aligned_cols=156 Identities=20% Similarity=0.241 Sum_probs=99.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccc----cceeEEEEEEEec-CCcE-----E-----EEEEEeCCChhh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT----VGASFLSQTIALQ-DSTT-----V-----KFEIWDTAGQER 95 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~-----~-----~~~i~D~~G~~~ 95 (202)
.+...|+++|++++|||||+++|.+.......... .+........... .+.. . .+.+|||||++.
T Consensus 4 ~R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 4 LRQPIVVVLGHVDHGKTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 45668999999999999999999875432222211 1111111110000 0000 1 278999999999
Q ss_pred hhhcccccccCccEEEEEEeCCC---hhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC------------hH
Q 028884 96 YAALAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP------------AQ 160 (202)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~ 160 (202)
|..++...+..+|++++|+|+++ +.++..+ ..+.. .++|+++++||+|+....... ..
T Consensus 84 f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i----~~~~~---~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 84 FTNLRKRGGALADIAILVVDINEGFQPQTIEAI----NILKR---RKTPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHH----HHHHH---cCCCEEEEEECcCCchhhhhhcCchHHHHHhhhhH
Confidence 99888888889999999999997 3444333 22332 378899999999985321100 00
Q ss_pred -----------HHHHHHHH---------------cCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 161 -----------DGIEYAEK---------------NGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 161 -----------~~~~~~~~---------------~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
+...+... ...+++++|+++|.|++++++.+..
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~ 215 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAG 215 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHH
Confidence 00001111 1356899999999999999988764
No 220
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.77 E-value=2.5e-18 Score=137.37 Aligned_cols=167 Identities=22% Similarity=0.311 Sum_probs=122.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...+||+++|..|+||||||-.|....+.+.-.+-.....-...+. ... +...++|++..+.-+.....-++.||++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvt--Pe~-vpt~ivD~ss~~~~~~~l~~EirkA~vi 83 (625)
T KOG1707|consen 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVT--PEN-VPTSIVDTSSDSDDRLCLRKEIRKADVI 83 (625)
T ss_pred ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccC--cCc-CceEEEecccccchhHHHHHHHhhcCEE
Confidence 4579999999999999999999999877544332221111111111 222 4589999987665555556678899999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHH-HHHHHHHc-CC-eEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKA-QYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQD-GIEYAEKN-GM-FFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~-~~~~~~~~-~~-~~~~~s~~~~~~i 184 (202)
.++|+.+++.+++.+ .+|+..+++.. ...+|+|+|+||.|.......+.+. ..-+.... .+ ..++|||++-.++
T Consensus 84 ~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n~ 163 (625)
T KOG1707|consen 84 CLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLANV 163 (625)
T ss_pred EEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhhh
Confidence 999999999999988 78999998874 3679999999999987655443232 22222221 11 2799999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 028884 185 NQLFEEIAKRLPRPSP 200 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~~ 200 (202)
.++|.+....+..+..
T Consensus 164 ~e~fYyaqKaVihPt~ 179 (625)
T KOG1707|consen 164 SELFYYAQKAVIHPTS 179 (625)
T ss_pred HhhhhhhhheeeccCc
Confidence 9999999998887754
No 221
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.77 E-value=4.2e-18 Score=125.83 Aligned_cols=146 Identities=20% Similarity=0.131 Sum_probs=90.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCC--C-----------------------------CCCccccceeEEEEEEEecCCcEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQF--D-----------------------------PTSKVTVGASFLSQTIALQDSTTV 83 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~ 83 (202)
+|+++|+.++|||||+.+|+...- . .......+.+.....+.+. ..
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~---~~ 77 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETE---KY 77 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeC---Ce
Confidence 589999999999999999974210 0 0001112222222233332 26
Q ss_pred EEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhH------HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC--
Q 028884 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS------FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR-- 155 (202)
Q Consensus 84 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s------~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~-- 155 (202)
.+.+||+||+..+...+...+..+|++|+|+|++++.. ..+....+...... ...|+++++||+|+....
T Consensus 78 ~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~iiivvNK~Dl~~~~~~ 155 (219)
T cd01883 78 RFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTL--GVKQLIVAVNKMDDVTVNWS 155 (219)
T ss_pred EEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHc--CCCeEEEEEEcccccccccc
Confidence 89999999998887767777888999999999998521 11222222223222 236799999999987421
Q ss_pred CC----ChHHHHHHHHHc-----CCeEEEeccCCCCCHH
Q 028884 156 EV----PAQDGIEYAEKN-----GMFFIETSAKTADNIN 185 (202)
Q Consensus 156 ~~----~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~ 185 (202)
.. ...+...+.... .++++++||++|.|++
T Consensus 156 ~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 156 EERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 11 111222223333 3679999999999986
No 222
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=8.9e-18 Score=113.76 Aligned_cols=135 Identities=21% Similarity=0.268 Sum_probs=94.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----hhhhhhcccccccCccEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----QERYAALAPLYYRGAAVA 110 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----~~~~~~~~~~~~~~~d~~ 110 (202)
||+++|+.|+|||||+++|.+... .+..+....+ .=.++|||| +..+..........||++
T Consensus 3 rimliG~~g~GKTTL~q~L~~~~~--~~~KTq~i~~-------------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~V 67 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGEEI--RYKKTQAIEY-------------YDNTIDTPGEYIENPRFYHALIVTAQDADVV 67 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCCCC--CcCccceeEe-------------cccEEECChhheeCHHHHHHHHHHHhhCCEE
Confidence 799999999999999999998554 2222222211 123589999 333444444455679999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~ 189 (202)
++|.|++++.+... .. +.. ....|+|-|+||+|+... ....+.+.++.+..++. +|.+|+.+|+|++++.+
T Consensus 68 ~ll~dat~~~~~~p-P~----fa~--~f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~ 139 (143)
T PF10662_consen 68 LLLQDATEPRSVFP-PG----FAS--MFNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKD 139 (143)
T ss_pred EEEecCCCCCccCC-ch----hhc--ccCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHH
Confidence 99999998743211 11 111 235789999999998743 33455666777777765 89999999999999999
Q ss_pred HHH
Q 028884 190 EIA 192 (202)
Q Consensus 190 ~l~ 192 (202)
+|-
T Consensus 140 ~L~ 142 (143)
T PF10662_consen 140 YLE 142 (143)
T ss_pred HHh
Confidence 875
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.77 E-value=5.1e-17 Score=129.77 Aligned_cols=162 Identities=15% Similarity=0.155 Sum_probs=105.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCC-------------C---CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF-------------D---PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
..+.++|+++|++++|||||+++|++... + .......+.+... ..+..+. ..+.++||||+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~--~~~~~~~-~~i~~iDtPGh 85 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSH--VEYETAN-RHYAHVDCPGH 85 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEee--eEEcCCC-cEEEEEECCCH
Confidence 45689999999999999999999986210 0 0011222222222 2222222 57899999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCCC---ChHHHHHHHHHc
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREV---PAQDGIEYAEKN 169 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~ 169 (202)
.+|.......+..+|++++|+|+.+... .+..+++..+.. .++|.+ +++||+|+.+.... ...+...+....
T Consensus 86 ~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~---~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~ 161 (396)
T PRK12735 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ---VGVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH---cCCCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHc
Confidence 9887666677788999999999987532 222344444443 357755 57999998643211 112334444443
Q ss_pred -----CCeEEEeccCCCC----------CHHHHHHHHHHHcCCC
Q 028884 170 -----GMFFIETSAKTAD----------NINQLFEEIAKRLPRP 198 (202)
Q Consensus 170 -----~~~~~~~s~~~~~----------~i~~~~~~l~~~i~~~ 198 (202)
..+++++|++++. ++.++++.|...+..+
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~~p 205 (396)
T PRK12735 162 DFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIPEP 205 (396)
T ss_pred CCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCCCC
Confidence 2679999999984 6788999988876533
No 224
>COG2262 HflX GTPases [General function prediction only]
Probab=99.76 E-value=6e-17 Score=125.30 Aligned_cols=159 Identities=24% Similarity=0.241 Sum_probs=120.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAALAP 101 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~ 101 (202)
.....|.++|=+|+|||||+|.|.+........-..+.+.+...+.+.++. .+.+.||.|. +.|++..+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~g~--~vlLtDTVGFI~~LP~~LV~AFksTLE 267 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGDGR--KVLLTDTVGFIRDLPHPLVEAFKSTLE 267 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccccccccccCceeEEEeCCCc--eEEEecCccCcccCChHHHHHHHHHHH
Confidence 457899999999999999999999866544445555666767777777644 7889999993 33455444
Q ss_pred ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
. ...+|+++.|+|+++|...+.+......+......++|+|+|.||+|+..... .........-..+.+||++|
T Consensus 268 E-~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~ 341 (411)
T COG2262 268 E-VKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTG 341 (411)
T ss_pred H-hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccC
Confidence 3 45699999999999997777777777777777667799999999999765443 11111122115899999999
Q ss_pred CCHHHHHHHHHHHcCC
Q 028884 182 DNINQLFEEIAKRLPR 197 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~ 197 (202)
.|++.+.+.|.+.+..
T Consensus 342 ~gl~~L~~~i~~~l~~ 357 (411)
T COG2262 342 EGLDLLRERIIELLSG 357 (411)
T ss_pred cCHHHHHHHHHHHhhh
Confidence 9999999999998764
No 225
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.76 E-value=2.3e-17 Score=121.95 Aligned_cols=154 Identities=15% Similarity=0.167 Sum_probs=95.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccc--------------cce---------eEEEEEE------------EecC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT--------------VGA---------SFLSQTI------------ALQD 79 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--------------~~~---------~~~~~~~------------~~~~ 79 (202)
+|+++|+.++|||||+++|..+.+....... .+. +.....+ ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 5899999999999999999976553321100 000 0000000 0001
Q ss_pred CcEEEEEEEeCCChhhhhhccccccc--CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~ 157 (202)
.....+.++|+||++.|.......+. .+|++++|+|+..+.. .....++..+... ++|+++|+||+|+.++...
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~~---~ip~ivvvNK~D~~~~~~~ 156 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALAL---NIPVFVVVTKIDLAPANIL 156 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEECccccCHHHH
Confidence 11257899999999988654444443 6899999999987632 2334455555443 5789999999998643221
Q ss_pred C--hHHHHHHHH--------------------------HcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 158 P--AQDGIEYAE--------------------------KNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 158 ~--~~~~~~~~~--------------------------~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
. ..+.....+ ....+++.+|+.+|.|+++++..|.
T Consensus 157 ~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 157 QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 111111111 1123789999999999999887764
No 226
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.76 E-value=4.7e-17 Score=130.02 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=102.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCC----------------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF----------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
..+.++|+++|+.++|||||+++|++... ........+.+. ....+... ...+.+|||||+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~--~~~~~~~~-~~~~~liDtpGh 85 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINT--AHVEYETE-NRHYAHVDCPGH 85 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceee--EEEEEcCC-CEEEEEEECCch
Confidence 35689999999999999999999974210 000112223332 22333332 267899999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCCCC---hHHHHHHHHHc
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREVP---AQDGIEYAEKN 169 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~~~~~~~---~~~~~~~~~~~ 169 (202)
+.|.......+..+|++++|+|+..+... +..+.+..+... ++|.+ +++||+|+.+..... ..+...+....
T Consensus 86 ~~f~~~~~~~~~~~D~~ilVvda~~g~~~-qt~e~l~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~ 161 (394)
T TIGR00485 86 ADYVKNMITGAAQMDGAILVVSATDGPMP-QTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSEY 161 (394)
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhc
Confidence 98876666666788999999999875322 223344444433 56655 689999986532211 22344555554
Q ss_pred C-----CeEEEeccCCCC--------CHHHHHHHHHHHcC
Q 028884 170 G-----MFFIETSAKTAD--------NINQLFEEIAKRLP 196 (202)
Q Consensus 170 ~-----~~~~~~s~~~~~--------~i~~~~~~l~~~i~ 196 (202)
+ ++++++|++++. ++.++++.|...+.
T Consensus 162 ~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 162 DFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred CCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 4 689999999875 35566666665543
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.75 E-value=3e-17 Score=120.86 Aligned_cols=114 Identities=14% Similarity=0.139 Sum_probs=77.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCC----------------CccccceeEEEEEEEec-------CCcEEEEEEEeCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPT----------------SKVTVGASFLSQTIALQ-------DSTTVKFEIWDTA 91 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~~~~~~~~~~~-------~~~~~~~~i~D~~ 91 (202)
+|+++|+.++|||||+++|+...-... .....+.........+. ++..+.+.+||||
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence 799999999999999999986421100 00111111111122222 1335789999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
|+..|......+++.+|++++|+|+.++.+... ...+..... .++|+++|+||+|+.
T Consensus 82 G~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t-~~~l~~~~~---~~~p~ilviNKiD~~ 138 (222)
T cd01885 82 GHVDFSSEVTAALRLCDGALVVVDAVEGVCVQT-ETVLRQALK---ERVKPVLVINKIDRL 138 (222)
T ss_pred CccccHHHHHHHHHhcCeeEEEEECCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCcc
Confidence 999999888999999999999999998754433 222232322 357899999999975
No 228
>CHL00071 tufA elongation factor Tu
Probab=99.75 E-value=6.7e-17 Score=129.62 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=103.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD----------------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
..+.++|+++|++++|||||+++|++.... .......+.+... ..+..+. ..+.++|+||+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~--~~~~~~~-~~~~~iDtPGh 85 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAH--VEYETEN-RHYAHVDCPGH 85 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccE--EEEccCC-eEEEEEECCCh
Confidence 356799999999999999999999974110 0111222222222 2222222 57889999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCC---ChHHHHHHHHHc
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKN 169 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~ 169 (202)
..|.......+..+|++++|+|+..+.. .+..+.+..+... ++| +++++||+|+.+.... ...+...+.+..
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~g~~-~qt~~~~~~~~~~---g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~ 161 (409)
T CHL00071 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTKEHILLAKQV---GVPNIVVFLNKEDQVDDEELLELVELEVRELLSKY 161 (409)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 8887666667788999999999987532 2333344444433 567 7788999998653221 112333444433
Q ss_pred C-----CeEEEeccCCCCC------------------HHHHHHHHHHHcC
Q 028884 170 G-----MFFIETSAKTADN------------------INQLFEEIAKRLP 196 (202)
Q Consensus 170 ~-----~~~~~~s~~~~~~------------------i~~~~~~l~~~i~ 196 (202)
+ .+++++|+.+|.| +..+++.|...+.
T Consensus 162 ~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~ 211 (409)
T CHL00071 162 DFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIP 211 (409)
T ss_pred CCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCC
Confidence 2 6799999998863 4667777776653
No 229
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1e-16 Score=127.75 Aligned_cols=156 Identities=16% Similarity=0.177 Sum_probs=117.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+..=|+++|+...|||||+..+-.........-.++.++....+.+.......+.|+|||||+.|..+...-..-+|++|
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaI 83 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAI 83 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEE
Confidence 45678999999999999999999988777777777777777666665322247999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC---------CeEEEeccCCCC
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG---------MFFIETSAKTAD 182 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~---------~~~~~~s~~~~~ 182 (202)
||+|+++.--.+. .+- +.-....+.|++|++||+|.++... ........+++ ..++++||++|+
T Consensus 84 LVVa~dDGv~pQT-iEA---I~hak~a~vP~iVAiNKiDk~~~np---~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~ 156 (509)
T COG0532 84 LVVAADDGVMPQT-IEA---INHAKAAGVPIVVAINKIDKPEANP---DKVKQELQEYGLVPEEWGGDVIFVPVSAKTGE 156 (509)
T ss_pred EEEEccCCcchhH-HHH---HHHHHHCCCCEEEEEecccCCCCCH---HHHHHHHHHcCCCHhhcCCceEEEEeeccCCC
Confidence 9999999743222 222 3333355899999999999875332 12222222222 358999999999
Q ss_pred CHHHHHHHHHHH
Q 028884 183 NINQLFEEIAKR 194 (202)
Q Consensus 183 ~i~~~~~~l~~~ 194 (202)
|+++++..++-.
T Consensus 157 Gi~eLL~~ill~ 168 (509)
T COG0532 157 GIDELLELILLL 168 (509)
T ss_pred CHHHHHHHHHHH
Confidence 999999988654
No 230
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.74 E-value=7.5e-17 Score=131.84 Aligned_cols=157 Identities=19% Similarity=0.165 Sum_probs=116.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh------hhhcccc-cc-
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER------YAALAPL-YY- 104 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~------~~~~~~~-~~- 104 (202)
..+|+++|.||+|||||.|+|++........+..+.+...-.+.+.+ .+++++|.||-=. -+...+. .+
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~---~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG---HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCceecCCCCeeEEEEEEEEEecC---ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 46699999999999999999999887666777777777666666554 3599999999211 1122222 23
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
...|++|-|+|+++-+. ++.-.++ +. .-+.|++++.|+.|..+.+- ...+..++.+.+++|+++++|++|.|+
T Consensus 80 ~~~D~ivnVvDAtnLeR--nLyltlQ-Ll---E~g~p~ilaLNm~D~A~~~G-i~ID~~~L~~~LGvPVv~tvA~~g~G~ 152 (653)
T COG0370 80 GKPDLIVNVVDATNLER--NLYLTLQ-LL---ELGIPMILALNMIDEAKKRG-IRIDIEKLSKLLGVPVVPTVAKRGEGL 152 (653)
T ss_pred CCCCEEEEEcccchHHH--HHHHHHH-HH---HcCCCeEEEeccHhhHHhcC-CcccHHHHHHHhCCCEEEEEeecCCCH
Confidence 34699999999998531 2222222 23 23788999999999766544 345677888899999999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 028884 185 NQLFEEIAKRLPRPS 199 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~ 199 (202)
+++.+.+.+....+.
T Consensus 153 ~~l~~~i~~~~~~~~ 167 (653)
T COG0370 153 EELKRAIIELAESKT 167 (653)
T ss_pred HHHHHHHHHhccccc
Confidence 999999988766554
No 231
>PLN03126 Elongation factor Tu; Provisional
Probab=99.74 E-value=1.1e-16 Score=129.87 Aligned_cols=147 Identities=14% Similarity=0.060 Sum_probs=95.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCC----------------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF----------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
...+.++|+++|++++|||||+++|+.... ........+.+.....+.. .. ..+.++|+||
T Consensus 77 ~~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~--~~-~~i~liDtPG 153 (478)
T PLN03126 77 RKKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET--EN-RHYAHVDCPG 153 (478)
T ss_pred ccCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec--CC-cEEEEEECCC
Confidence 346789999999999999999999996211 0111122222222222222 22 5789999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCC---ChHHHHHHHHH
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEK 168 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~ 168 (202)
++.|-......+..+|++++|+|+.++... +..+++..+... ++| +++++||+|+....+. ...+...+...
T Consensus 154 h~~f~~~~~~g~~~aD~ailVVda~~G~~~-qt~e~~~~~~~~---gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~ 229 (478)
T PLN03126 154 HADYVKNMITGAAQMDGAILVVSGADGPMP-QTKEHILLAKQV---GVPNMVVFLNKQDQVDDEELLELVELEVRELLSS 229 (478)
T ss_pred HHHHHHHHHHHHhhCCEEEEEEECCCCCcH-HHHHHHHHHHHc---CCCeEEEEEecccccCHHHHHHHHHHHHHHHHHh
Confidence 999877667777889999999999976432 234444444433 567 7788999998653221 11233334333
Q ss_pred c-----CCeEEEeccCCCC
Q 028884 169 N-----GMFFIETSAKTAD 182 (202)
Q Consensus 169 ~-----~~~~~~~s~~~~~ 182 (202)
. ..+++++|+.++.
T Consensus 230 ~g~~~~~~~~vp~Sa~~g~ 248 (478)
T PLN03126 230 YEFPGDDIPIISGSALLAL 248 (478)
T ss_pred cCCCcCcceEEEEEccccc
Confidence 2 4679999998875
No 232
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.74 E-value=7.6e-17 Score=126.34 Aligned_cols=164 Identities=18% Similarity=0.182 Sum_probs=122.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC---------------CCCCCccccce--eEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ---------------FDPTSKVTVGA--SFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~---------------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
++.-|..++.+-..|||||..|++..- .+......++. ......+...++..+.++++||||+
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 445677889999999999999997631 11122222333 3333344445667799999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC--
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-- 171 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (202)
..|.....+.+..|.++++++|++.+-.-+.+.+.|..+.. +.-++.|+||+|++...... -..+.....++
T Consensus 87 VDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~----~LeIiPViNKIDLP~Adper--vk~eIe~~iGid~ 160 (603)
T COG0481 87 VDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALEN----NLEIIPVLNKIDLPAADPER--VKQEIEDIIGIDA 160 (603)
T ss_pred cceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHc----CcEEEEeeecccCCCCCHHH--HHHHHHHHhCCCc
Confidence 99988888889999999999999999777778888887754 56699999999998654322 22222233333
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 172 -FFIETSAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 172 -~~~~~s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
..+.+||++|.|+.++++.|++.+..|+.
T Consensus 161 ~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 161 SDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred chheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 38999999999999999999999998864
No 233
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.74 E-value=1.2e-16 Score=120.22 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=108.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAPLY 103 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~~ 103 (202)
....|+|.|.||+|||||++.+.+.+.....+|..+.....-.+. ....+++++||||.-. ........
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~AkpEvA~YPFTTK~i~vGhfe---~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A 243 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTAKPEVAPYPFTTKGIHVGHFE---RGYLRIQVIDTPGLLDRPLEERNEIERQAILA 243 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcCCCccCCCCccccceeEeeee---cCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence 467899999999999999999999876555554444444333333 3336899999999321 11111122
Q ss_pred cc-CccEEEEEEeCC--ChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-CCeEEEeccC
Q 028884 104 YR-GAAVAVVVYDIT--SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAK 179 (202)
Q Consensus 104 ~~-~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~ 179 (202)
++ -.++++|+||.+ ++-+++.....++.+...- +.|+++|+||.|....+... ++....... +.....+++.
T Consensus 244 L~hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f--~~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~ 319 (346)
T COG1084 244 LRHLAGVILFLFDPSETCGYSLEEQISLLEEIKELF--KAPIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISAT 319 (346)
T ss_pred HHHhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhc--CCCeEEEEecccccchhHHH--HHHHHHHhhccccccceeee
Confidence 22 358999999998 4567888888888887764 48999999999987544332 222223333 3336778888
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q 028884 180 TADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~~ 198 (202)
.+.+++.+-..+.....+.
T Consensus 320 ~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 320 KGCGLDKLREEVRKTALEP 338 (346)
T ss_pred ehhhHHHHHHHHHHHhhch
Confidence 8888887777776665443
No 234
>PRK00049 elongation factor Tu; Reviewed
Probab=99.74 E-value=3e-16 Score=125.34 Aligned_cols=162 Identities=14% Similarity=0.143 Sum_probs=105.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC----------------CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD----------------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
..+.++|+++|+.++|||||+++|++.... .......+.+.. ...+.... ..+.++||||+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~--~~~~~~~~-~~i~~iDtPG~ 85 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTA--HVEYETEK-RHYAHVDCPGH 85 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeee--EEEEcCCC-eEEEEEECCCH
Confidence 356899999999999999999999873110 001122222222 22232222 57899999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEE-EEEeCCCCCCCCCC---ChHHHHHHHHHc
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMA-LVGNKADLHEKREV---PAQDGIEYAEKN 169 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~i-vv~nK~D~~~~~~~---~~~~~~~~~~~~ 169 (202)
.+|.......+..+|++++|+|+..+.. .+..+++..+... ++|.+ +++||+|+.+.... ...+...+....
T Consensus 86 ~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~~---g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~ 161 (396)
T PRK00049 86 ADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFLNKCDMVDDEELLELVEMEVRELLSKY 161 (396)
T ss_pred HHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHHc---CCCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhc
Confidence 8887666677889999999999987632 2333444444433 57765 57999998642221 111233333332
Q ss_pred -----CCeEEEeccCCCC----------CHHHHHHHHHHHcCCC
Q 028884 170 -----GMFFIETSAKTAD----------NINQLFEEIAKRLPRP 198 (202)
Q Consensus 170 -----~~~~~~~s~~~~~----------~i~~~~~~l~~~i~~~ 198 (202)
..+++++|++++. ++.++++.|.+.+..+
T Consensus 162 ~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~~p 205 (396)
T PRK00049 162 DFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIPTP 205 (396)
T ss_pred CCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCCCC
Confidence 3678999999875 5778888888776533
No 235
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.73 E-value=6.5e-17 Score=117.65 Aligned_cols=160 Identities=16% Similarity=0.185 Sum_probs=95.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhhhhh-----cccccccC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQERYAA-----LAPLYYRG 106 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-----~~~~~~~~ 106 (202)
.++|+++|.+|+|||||+|.|.+............. ........+.......+.+||+||...... +....+..
T Consensus 1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~~ 80 (197)
T cd04104 1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFSE 80 (197)
T ss_pred CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCccC
Confidence 378999999999999999999985543222211111 011111111111123689999999643211 12223567
Q ss_pred ccEEEEEEeCCChhHHHH-HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC-----------CChHHHHHHHH----H--
Q 028884 107 AAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEKRE-----------VPAQDGIEYAE----K-- 168 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-----------~~~~~~~~~~~----~-- 168 (202)
+|+++++.+. + +.. ...|++.+... +.|+++|+||+|+..... ...++.++.+. .
T Consensus 81 ~d~~l~v~~~--~--~~~~d~~~~~~l~~~---~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~ 153 (197)
T cd04104 81 YDFFIIISST--R--FSSNDVKLAKAIQCM---GKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAG 153 (197)
T ss_pred cCEEEEEeCC--C--CCHHHHHHHHHHHHh---CCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 8998888542 2 222 24455556554 578999999999843211 01111222222 1
Q ss_pred -cCCeEEEeccC--CCCCHHHHHHHHHHHcCCCC
Q 028884 169 -NGMFFIETSAK--TADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 169 -~~~~~~~~s~~--~~~~i~~~~~~l~~~i~~~~ 199 (202)
...+++.+|+. .++++..+.+.|...+.+.+
T Consensus 154 ~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 154 VSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHK 187 (197)
T ss_pred CCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHH
Confidence 12358999998 67999999999999887654
No 236
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=3e-16 Score=124.80 Aligned_cols=162 Identities=16% Similarity=0.159 Sum_probs=123.4
Q ss_pred CCCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccc
Q 028884 24 AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLY 103 (202)
Q Consensus 24 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 103 (202)
..++...++..-|.|+|+...|||||+..|-.........-.++..+....+..+.+. .+.|.||||+..|..+...-
T Consensus 144 a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~G~--~iTFLDTPGHaAF~aMRaRG 221 (683)
T KOG1145|consen 144 ADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPSGK--SITFLDTPGHAAFSAMRARG 221 (683)
T ss_pred cCHhhcCCCCCeEEEeecccCChhhHHHHHhhCceehhhcCCccceeceEEEecCCCC--EEEEecCCcHHHHHHHHhcc
Confidence 3344444567788999999999999999999988777777777888888888888665 89999999999999999999
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH------Hc--CCeEEE
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE------KN--GMFFIE 175 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~------~~--~~~~~~ 175 (202)
...+|++++|+.+.|+--.+. . +.|.-....+.|++|++||+|.++.. ......++.. .+ +..+++
T Consensus 222 A~vtDIvVLVVAadDGVmpQT-~---EaIkhAk~A~VpiVvAinKiDkp~a~--pekv~~eL~~~gi~~E~~GGdVQvip 295 (683)
T KOG1145|consen 222 ANVTDIVVLVVAADDGVMPQT-L---EAIKHAKSANVPIVVAINKIDKPGAN--PEKVKRELLSQGIVVEDLGGDVQVIP 295 (683)
T ss_pred CccccEEEEEEEccCCccHhH-H---HHHHHHHhcCCCEEEEEeccCCCCCC--HHHHHHHHHHcCccHHHcCCceeEEE
Confidence 999999999999998732222 2 33444445689999999999976432 1222222222 12 346899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 028884 176 TSAKTADNINQLFEEIAK 193 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~ 193 (202)
+||++|.|++.+-+++.-
T Consensus 296 iSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 296 ISALTGENLDLLEEAILL 313 (683)
T ss_pred eecccCCChHHHHHHHHH
Confidence 999999999998887754
No 237
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.72 E-value=1.4e-16 Score=128.53 Aligned_cols=148 Identities=18% Similarity=0.197 Sum_probs=98.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCC--C-----------------------------CCCccccceeEEEEEEEecC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF--D-----------------------------PTSKVTVGASFLSQTIALQD 79 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 79 (202)
.+.++|+++|+.++|||||+.+|+...- . .......+.+.....+.
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~--- 81 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFE--- 81 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEec---
Confidence 5679999999999999999999875210 0 00111122222222222
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHH-------HHHHHHHHHHHHcCCCCCe-EEEEEeCCCC
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-------NKAQYWVKELQKHGSPDIV-MALVGNKADL 151 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~ 151 (202)
.....+.++|+||+++|.......+..+|++|+|+|+++. .| .+..+.+..+... ++| ++|++||+|+
T Consensus 82 ~~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT~eh~~~~~~~---gi~~iIV~vNKmD~ 157 (447)
T PLN00043 82 TTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQTREHALLAFTL---GVKQMICCCNKMDA 157 (447)
T ss_pred CCCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchHHHHHHHHHHc---CCCcEEEEEEcccC
Confidence 2237899999999999988888889999999999999874 12 2333333333333 554 7888999997
Q ss_pred CCCC------CCChHHHHHHHHHcC-----CeEEEeccCCCCCHH
Q 028884 152 HEKR------EVPAQDGIEYAEKNG-----MFFIETSAKTADNIN 185 (202)
Q Consensus 152 ~~~~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~ 185 (202)
.... ....++...+++..+ ++++++|+++|+|+.
T Consensus 158 ~~~~~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~ 202 (447)
T PLN00043 158 TTPKYSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMI 202 (447)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHcCCCcccceEEEEecccccccc
Confidence 5211 112344555566554 679999999999985
No 238
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=5.5e-17 Score=119.44 Aligned_cols=164 Identities=18% Similarity=0.260 Sum_probs=114.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPL 102 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~ 102 (202)
.+..++|+++|.+|+|||||||+|+++...+...-..+.+.........++. .+.+||+||..+ ++.....
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~--~l~lwDtPG~gdg~~~D~~~r~~~~d 113 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGE--NLVLWDTPGLGDGKDKDAEHRQLYRD 113 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhcccc--ceEEecCCCcccchhhhHHHHHHHHH
Confidence 4678999999999999999999999877666654444444434333333333 699999999443 7788888
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-------CCChHHH-----------HH
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR-------EVPAQDG-----------IE 164 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~-------~~~~~~~-----------~~ 164 (202)
++...|.+++++++.++.- ..-..++..+... ..+.++++++|++|....- ......+ .+
T Consensus 114 ~l~~~DLvL~l~~~~draL-~~d~~f~~dVi~~-~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~ 191 (296)
T COG3596 114 YLPKLDLVLWLIKADDRAL-GTDEDFLRDVIIL-GLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGR 191 (296)
T ss_pred HhhhccEEEEeccCCCccc-cCCHHHHHHHHHh-ccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999842 2224444544444 2348899999999975431 0011111 11
Q ss_pred HHHHcCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 165 YAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 165 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+++. -.+++..+...++|++.+...+++.+..-
T Consensus 192 ~~q~-V~pV~~~~~r~~wgl~~l~~ali~~lp~e 224 (296)
T COG3596 192 LFQE-VKPVVAVSGRLPWGLKELVRALITALPVE 224 (296)
T ss_pred HHhh-cCCeEEeccccCccHHHHHHHHHHhCccc
Confidence 1111 34588888999999999999999988643
No 239
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.71 E-value=2.1e-16 Score=128.50 Aligned_cols=152 Identities=18% Similarity=0.157 Sum_probs=94.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC---------------------------------ccccceeEEEEEEE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS---------------------------------KVTVGASFLSQTIA 76 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~ 76 (202)
....++|+++|+.++|||||+++|+...-.... ....+.+.....+.
T Consensus 24 ~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~ 103 (474)
T PRK05124 24 HKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFS 103 (474)
T ss_pred ccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEec
Confidence 356799999999999999999999864211100 01112222222222
Q ss_pred ecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 77 LQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 77 ~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
. ....+.++||||++.|.......+..+|++++|+|+..+..-.. ...+..+.... ..|++|++||+|+.+...
T Consensus 104 ~---~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt-~~~~~l~~~lg--~~~iIvvvNKiD~~~~~~ 177 (474)
T PRK05124 104 T---EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQT-RRHSFIATLLG--IKHLVVAVNKMDLVDYSE 177 (474)
T ss_pred c---CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccc-hHHHHHHHHhC--CCceEEEEEeeccccchh
Confidence 2 22578999999998886555555788999999999987632211 22222222222 246899999999864322
Q ss_pred CChHHH----HHHHHHc----CCeEEEeccCCCCCHHHH
Q 028884 157 VPAQDG----IEYAEKN----GMFFIETSAKTADNINQL 187 (202)
Q Consensus 157 ~~~~~~----~~~~~~~----~~~~~~~s~~~~~~i~~~ 187 (202)
....+. ..+.... ..+++++|+++|.|+.+.
T Consensus 178 ~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 178 EVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 111222 2222222 367999999999998753
No 240
>PLN03127 Elongation factor Tu; Provisional
Probab=99.71 E-value=5.6e-16 Score=125.03 Aligned_cols=163 Identities=13% Similarity=0.134 Sum_probs=101.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhC------CC----------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRG------QF----------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
...+.++|+++|+.++|||||+++|.+. .. ........+.+..... +.... ..+.++||||
T Consensus 57 ~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~--~~~~~-~~i~~iDtPG 133 (447)
T PLN03127 57 RTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVE--YETAK-RHYAHVDCPG 133 (447)
T ss_pred cCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEE--EcCCC-eEEEEEECCC
Confidence 3467899999999999999999999732 10 0111122333332222 22222 6789999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCCCh---HHHHHHHHH
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREVPA---QDGIEYAEK 168 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~~~---~~~~~~~~~ 168 (202)
+..|-......+..+|++++|+|+.++.. .+..+.+..+... ++| +++++||+|+.+...... .+...+...
T Consensus 134 h~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~~---gip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~ 209 (447)
T PLN03127 134 HADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQV---GVPSLVVFLNKVDVVDDEELLELVEMELRELLSF 209 (447)
T ss_pred ccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHHc---CCCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHH
Confidence 98876555555667999999999987632 2233444444433 577 578899999865322111 112222222
Q ss_pred c-----CCeEEEeccC---CCCC-------HHHHHHHHHHHcCCC
Q 028884 169 N-----GMFFIETSAK---TADN-------INQLFEEIAKRLPRP 198 (202)
Q Consensus 169 ~-----~~~~~~~s~~---~~~~-------i~~~~~~l~~~i~~~ 198 (202)
. .++++++|+. ++.| +.++++.|.+.+..+
T Consensus 210 ~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 210 YKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred hCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 1 3578888765 4555 788899988877544
No 241
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.71 E-value=1.2e-16 Score=121.06 Aligned_cols=116 Identities=15% Similarity=0.130 Sum_probs=76.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCc---------c-----------ccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK---------V-----------TVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---------~-----------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
-+|+++|++|+|||||+++|+...-..... . ..+............+. ..+.+|||||+
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~-~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRD-CVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCC-EEEEEEECCCc
Confidence 579999999999999999998521100000 0 00111112222222222 78999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
..|.......++.+|++|+|+|++++... ....++.... ..++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~-~~~~i~~~~~---~~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEP-QTRKLFEVCR---LRGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccH-HHHHHHHHHH---hcCCCEEEEEECCccCCC
Confidence 98887777788999999999999876322 2233333333 247899999999997554
No 242
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.70 E-value=4e-16 Score=125.78 Aligned_cols=169 Identities=14% Similarity=0.117 Sum_probs=108.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCC---CCCccccceeEEEEEE---------------EecCC---------
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGASFLSQTI---------------ALQDS--------- 80 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~---------------~~~~~--------- 80 (202)
..++..++|.++|+...|||||+..|.+.... .......+.+...... ....+
T Consensus 29 ~~~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (460)
T PTZ00327 29 ISRQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPG 108 (460)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccc
Confidence 36678999999999999999999999974321 1111111111100000 00000
Q ss_pred -c-----EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 81 -T-----TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 81 -~-----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
. ...+.++|+||++.|-......+..+|++++|+|+..+....+..+.+..+.... -.+++||+||+|+.+.
T Consensus 109 ~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lg--i~~iIVvlNKiDlv~~ 186 (460)
T PTZ00327 109 CGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMK--LKHIIILQNKIDLVKE 186 (460)
T ss_pred ccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcC--CCcEEEEEecccccCH
Confidence 0 1468999999999987766667788999999999997521222333333333332 2458999999998643
Q ss_pred CCC--ChHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 155 REV--PAQDGIEYAEK---NGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 155 ~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
... ..++...+... ...+++++|+++|.|++.+++.|.+.+..+
T Consensus 187 ~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 187 AQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred HHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 221 11222222222 356899999999999999999999877765
No 243
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.70 E-value=3.7e-16 Score=116.97 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=107.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRG 106 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 106 (202)
..|.++|.|++|||||++.+...+.....+...+.....-.+.+.+.. .+.+-|.||.-+ .....-..+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yddf~--q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDDFS--QITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCCcccccceeeeccccceeeccccc--eeEeccCccccccccccCcccHHHHHHHHh
Confidence 456799999999999999999877543333333333333345554444 589999999432 11122234567
Q ss_pred ccEEEEEEeCCCh---hHHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe-EEEeccCC
Q 028884 107 AAVAVVVYDITSP---DSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKT 180 (202)
Q Consensus 107 ~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~ 180 (202)
++.++||+|++.+ ..+++++....++..+ ...+.|.++|+||+|+++.+ .....++...+.-+ ++++||+.
T Consensus 275 ~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~ 351 (366)
T KOG1489|consen 275 CKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKS 351 (366)
T ss_pred hceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeecc
Confidence 9999999999987 6666665555555443 34578899999999975321 22235566666544 99999999
Q ss_pred CCCHHHHHHHHHHH
Q 028884 181 ADNINQLFEEIAKR 194 (202)
Q Consensus 181 ~~~i~~~~~~l~~~ 194 (202)
++++.++++.|.+.
T Consensus 352 ~egl~~ll~~lr~~ 365 (366)
T KOG1489|consen 352 GEGLEELLNGLREL 365 (366)
T ss_pred ccchHHHHHHHhhc
Confidence 99999999888654
No 244
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.70 E-value=6.3e-16 Score=124.88 Aligned_cols=150 Identities=18% Similarity=0.164 Sum_probs=96.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCC-----------------------------CCCccccceeEEEEEEEecC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFD-----------------------------PTSKVTVGASFLSQTIALQD 79 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~-----------------------------~~~~~~~~~~~~~~~~~~~~ 79 (202)
.+.++|+++|+.++|||||+.+|+.. ... .......+.+.....+.+
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-- 82 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc--
Confidence 56799999999999999999999762 111 001112222322222222
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhH---H---HHHHHHHHHHHHcCCCCCe-EEEEEeCCCCC
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F---NKAQYWVKELQKHGSPDIV-MALVGNKADLH 152 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~ 152 (202)
....+.|+|+||+.+|-......+..+|++++|+|+..+.- + .+..+.+..+... ++| +|+++||+|..
T Consensus 83 -~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~---gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 83 -PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL---GVKQMIVCINKMDDK 158 (446)
T ss_pred -CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence 23689999999999998777778889999999999987631 1 2334444444433 555 67899999953
Q ss_pred C--CCC----CChHHHHHHHHHc-----CCeEEEeccCCCCCHHH
Q 028884 153 E--KRE----VPAQDGIEYAEKN-----GMFFIETSAKTADNINQ 186 (202)
Q Consensus 153 ~--~~~----~~~~~~~~~~~~~-----~~~~~~~s~~~~~~i~~ 186 (202)
. ..+ ....+...+.... .++++++|+.+|.|+.+
T Consensus 159 ~~~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 159 TVNYSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 2 111 1122233333332 36799999999999863
No 245
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.70 E-value=2.8e-16 Score=115.77 Aligned_cols=160 Identities=20% Similarity=0.277 Sum_probs=101.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-----hcccccccCcc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-----ALAPLYYRGAA 108 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~d 108 (202)
||+++|+.++||||+.+.++++..+.. ..-..+.......+. ....+.+.+||+||+..+. ......+++++
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~--~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~ 78 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVR--FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNVG 78 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEE--CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTES
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEe--cCCCcEEEEEEcCCccccccccccccHHHHHhccC
Confidence 799999999999999988887543222 112223333333333 2333689999999986443 34566789999
Q ss_pred EEEEEEeCCChh---HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC------ChHHHHHHHHHcC---CeEEEe
Q 028884 109 VAVVVYDITSPD---SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV------PAQDGIEYAEKNG---MFFIET 176 (202)
Q Consensus 109 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~---~~~~~~ 176 (202)
++|||+|+...+ .+..+...++.+.+. ++++.+.|+++|+|+..+... ..+.....+...+ +.++.+
T Consensus 79 ~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~T 157 (232)
T PF04670_consen 79 VLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFLT 157 (232)
T ss_dssp EEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEEE
T ss_pred EEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEec
Confidence 999999999433 233444455555555 789999999999998653211 1122333333444 779999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
|..+ ..+-++|..+++.+.+.
T Consensus 158 SI~D-~Sly~A~S~Ivq~LiP~ 178 (232)
T PF04670_consen 158 SIWD-ESLYEAWSKIVQKLIPN 178 (232)
T ss_dssp -TTS-THHHHHHHHHHHTTSTT
T ss_pred cCcC-cHHHHHHHHHHHHHccc
Confidence 9999 68999999999988754
No 246
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.69 E-value=8.8e-16 Score=126.03 Aligned_cols=116 Identities=14% Similarity=0.164 Sum_probs=78.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh--CCCCCC-------------C-------ccccceeEEEEEEEecCCcEEEEEEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPT-------------S-------KVTVGASFLSQTIALQDSTTVKFEIW 88 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~-------------~-------~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (202)
.+..+|+|+|++++|||||+++|+. +..... . ....+.......+.+ +. +.+.+|
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~--~~-~~inli 84 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY--RD-CLINLL 84 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE--CC-EEEEEE
Confidence 4567999999999999999999974 111000 0 001111111222332 22 689999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 89 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
||||+..|......+++.+|++|+|+|+++.... ....++.... ..++|+++++||+|+..
T Consensus 85 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~-~t~~l~~~~~---~~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 85 DTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEP-QTRKLMEVCR---LRDTPIFTFINKLDRDG 145 (526)
T ss_pred ECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCH-HHHHHHHHHH---hcCCCEEEEEECCcccc
Confidence 9999999887777788999999999999876322 2334444333 34789999999999753
No 247
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.69 E-value=4.5e-16 Score=124.69 Aligned_cols=147 Identities=22% Similarity=0.212 Sum_probs=91.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCC---------------------------------ccccceeEEEEEEEecCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTS---------------------------------KVTVGASFLSQTIALQDS 80 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~ 80 (202)
++|+++|+.++|||||+++|+...-.... ....+.+.....+.. .
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~--~ 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST--D 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc--C
Confidence 58999999999999999999753211000 011122222222222 2
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCCh-
Q 028884 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA- 159 (202)
Q Consensus 81 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~- 159 (202)
...+.++||||++.|.......+..+|++++|+|+..+...+ ..+.+..+.... ..++++++||+|+.+......
T Consensus 79 -~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~q-t~~~~~~~~~~~--~~~iivviNK~D~~~~~~~~~~ 154 (406)
T TIGR02034 79 -KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQ-TRRHSYIASLLG--IRHVVLAVNKMDLVDYDEEVFE 154 (406)
T ss_pred -CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccc-cHHHHHHHHHcC--CCcEEEEEEecccccchHHHHH
Confidence 258899999999988665556788999999999998763222 222223333332 235888999999865322111
Q ss_pred ---HHHHHHHHHcC---CeEEEeccCCCCCHHH
Q 028884 160 ---QDGIEYAEKNG---MFFIETSAKTADNINQ 186 (202)
Q Consensus 160 ---~~~~~~~~~~~---~~~~~~s~~~~~~i~~ 186 (202)
++...+....+ .+++++|+++|.|+.+
T Consensus 155 ~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 155 NIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred HHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 12222223333 4699999999999875
No 248
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.69 E-value=1.1e-16 Score=121.73 Aligned_cols=148 Identities=17% Similarity=0.185 Sum_probs=91.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCc------------------cccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSK------------------VTVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 96 (202)
+|+++|++|+|||||+++|+......... ...+.......+.+. . ..+.+|||||...+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~--~-~~i~liDtPG~~~f 77 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWK--G-HKINLIDTPGYADF 77 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEEC--C-EEEEEEECcCHHHH
Confidence 58999999999999999998632110000 011111111222222 2 68999999999888
Q ss_pred hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe--EE
Q 028884 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF--FI 174 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~ 174 (202)
...+..+++.+|++++|+|+++.........| ..+.. .++|+++++||+|+.... .......+....+.+ .+
T Consensus 78 ~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~-~~~~~---~~~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~ 151 (268)
T cd04170 78 VGETRAALRAADAALVVVSAQSGVEVGTEKLW-EFADE---AGIPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPL 151 (268)
T ss_pred HHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHH-HHHHH---cCCCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEE
Confidence 87888889999999999999987544332222 33332 368999999999976542 122233333334443 34
Q ss_pred EeccCCCCCHHHHHHHH
Q 028884 175 ETSAKTADNINQLFEEI 191 (202)
Q Consensus 175 ~~s~~~~~~i~~~~~~l 191 (202)
.+...++.++..+.+.+
T Consensus 152 ~ip~~~~~~~~~~vd~~ 168 (268)
T cd04170 152 QLPIGEGDDFKGVVDLL 168 (268)
T ss_pred EecccCCCceeEEEEcc
Confidence 44556665554444443
No 249
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.69 E-value=8.5e-16 Score=116.55 Aligned_cols=112 Identities=15% Similarity=0.114 Sum_probs=77.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCC--C----------------CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQF--D----------------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~--~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 96 (202)
+|+++|++++|||||+++|+...- . .......+.......+.+.+ ..+.++||||+..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liDTPG~~df 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD---HRINIIDTPGHVDF 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC---EEEEEEECCCcHHH
Confidence 589999999999999999975211 0 01111223333333333332 68999999999888
Q ss_pred hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
...+...++.+|++|+|+|+.+...-. ....+..+.. .++|+++++||+|+.+
T Consensus 78 ~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~---~~~p~ivviNK~D~~~ 130 (270)
T cd01886 78 TIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR---YNVPRIAFVNKMDRTG 130 (270)
T ss_pred HHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 888888999999999999998763222 2333333433 3688999999999864
No 250
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.69 E-value=1.3e-15 Score=115.90 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=88.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC----------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-----
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY----- 96 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~----- 96 (202)
..++|+|+|.+|+|||||+|+|++..+.... ..+.........+. .++..+.+.+|||||....
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~-~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIE-ENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEE-ECCEEEEEEEEecCCccccccchh
Confidence 4689999999999999999999998764332 22222222222333 2455588999999993211
Q ss_pred ---------------------hhccccccc--CccEEEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 97 ---------------------AALAPLYYR--GAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 97 ---------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
.......+. .+|+++|+++.+... +... ...++.+. . .+|+++|+||+|+.
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~-l~~~D~~~lk~l~---~-~v~vi~VinK~D~l 156 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHG-LKPLDIEFMKRLS---K-RVNIIPVIAKADTL 156 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCC-CCHHHHHHHHHHh---c-cCCEEEEEECCCcC
Confidence 111112233 467888888876421 1111 22333332 2 68999999999986
Q ss_pred CCC--CCChHHHHHHHHHcCCeEEEeccCC
Q 028884 153 EKR--EVPAQDGIEYAEKNGMFFIETSAKT 180 (202)
Q Consensus 153 ~~~--~~~~~~~~~~~~~~~~~~~~~s~~~ 180 (202)
... ........+.+...+++++.....+
T Consensus 157 ~~~e~~~~k~~i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 157 TPEELKEFKQRIMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CHHHHHHHHHHHHHHHHHcCCceECCCCCc
Confidence 532 2334556667777888888776543
No 251
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3.4e-15 Score=112.25 Aligned_cols=155 Identities=17% Similarity=0.131 Sum_probs=111.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYY 104 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~ 104 (202)
-..+++++|.|++|||||++.|++.+......+..+....+-.+.+.+ ..++++|+||.-. .........
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g---a~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG---AQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCccccccCceecccccceEeecC---ceEEEEcCcccccCcccCCCCcceeeeee
Confidence 358999999999999999999999776555554444455555566555 6899999998432 124466778
Q ss_pred cCccEEEEEEeCCChhH-HHHHHHHHHHHHH-------------------------------------------------
Q 028884 105 RGAAVAVVVYDITSPDS-FNKAQYWVKELQK------------------------------------------------- 134 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~------------------------------------------------- 134 (202)
++||++++|+|+..+.+ .+.+.+.++..--
T Consensus 139 R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V 218 (365)
T COG1163 139 RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADV 218 (365)
T ss_pred ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceE
Confidence 99999999999997654 4555444442100
Q ss_pred ----------------cCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 135 ----------------HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 135 ----------------~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
....-+|.++|.||.|+.. .++...+.+.. .++.+||..+.|++++.+.|++.+.
T Consensus 219 ~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 219 LIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred EEecCCcHHHHHHHHhhcceeeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 0011589999999999765 23333443333 6899999999999999999998864
No 252
>PRK13351 elongation factor G; Reviewed
Probab=99.68 E-value=6.5e-16 Score=131.43 Aligned_cols=116 Identities=16% Similarity=0.134 Sum_probs=81.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCC--------C-----CC-----ccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD--------P-----TS-----KVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--------~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
+...+|+|+|+.++|||||+++|+...-. . .+ ....+.......+.+. ...+.+|||||
T Consensus 6 ~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~---~~~i~liDtPG 82 (687)
T PRK13351 6 MQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWD---NHRINLIDTPG 82 (687)
T ss_pred ccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEEC---CEEEEEEECCC
Confidence 45689999999999999999999853110 0 00 0111222222223322 27899999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
+.++...+..+++.+|++++|+|++++........| ..+.. .++|+++++||+|+..
T Consensus 83 ~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~-~~~~~---~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 83 HIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVW-RQADR---YGIPRLIFINKMDRVG 139 (687)
T ss_pred cHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHHh---cCCCEEEEEECCCCCC
Confidence 999988888999999999999999987655544433 33332 3689999999999864
No 253
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.68 E-value=2.6e-15 Score=109.17 Aligned_cols=160 Identities=15% Similarity=0.148 Sum_probs=98.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCc--cccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-----------hcc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-----------ALA 100 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----------~~~ 100 (202)
++|+++|.+|+|||||+|.+++........ ...+.........+. + ..+.++||||..... ...
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~-~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD-G--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC-C--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 589999999999999999999876433221 122222222222222 2 579999999943221 112
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCC--CCCeEEEEEeCCCCCCCCCC------ChHHHHHHHHHcCCe
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--PDIVMALVGNKADLHEKREV------PAQDGIEYAEKNGMF 172 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~~~~ 172 (202)
....++.|++|+|+++.+. +. .....++.++.... .-.++++++|+.|....... .....+.+.+.++-.
T Consensus 78 ~~~~~g~~~illVi~~~~~-t~-~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r 155 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGRF-TE-EEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGR 155 (196)
T ss_pred HhcCCCCEEEEEEEECCCc-CH-HHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCe
Confidence 2234678999999998872 21 22233333433211 12468899999997654311 124455566666767
Q ss_pred EEEecc-----CCCCCHHHHHHHHHHHcCCC
Q 028884 173 FIETSA-----KTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 173 ~~~~s~-----~~~~~i~~~~~~l~~~i~~~ 198 (202)
++..+. ..+.++.++++.|.+.+.++
T Consensus 156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~~ 186 (196)
T cd01852 156 YVAFNNKAKGEEQEQQVKELLAKVESMVKEN 186 (196)
T ss_pred EEEEeCCCCcchhHHHHHHHHHHHHHHHHhc
Confidence 666553 45678999999998888763
No 254
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.68 E-value=1e-15 Score=129.00 Aligned_cols=153 Identities=21% Similarity=0.174 Sum_probs=95.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC---------------------------------ccccceeEEEEE
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS---------------------------------KVTVGASFLSQT 74 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~---------------------------------~~~~~~~~~~~~ 74 (202)
.+....++|+++|++++|||||+++|+...-.... ....+.+.....
T Consensus 19 ~~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~ 98 (632)
T PRK05506 19 HERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRY 98 (632)
T ss_pred ccCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeE
Confidence 34556799999999999999999999874321110 001111222222
Q ss_pred EEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 75 IALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 75 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
+... ...+.++||||++.|.......+..+|++++|+|+..+... +..+.+..+.... ..+++|++||+|+.+.
T Consensus 99 ~~~~---~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~-~t~e~~~~~~~~~--~~~iivvvNK~D~~~~ 172 (632)
T PRK05506 99 FATP---KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLT-QTRRHSFIASLLG--IRHVVLAVNKMDLVDY 172 (632)
T ss_pred EccC---CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccc-cCHHHHHHHHHhC--CCeEEEEEEecccccc
Confidence 2221 25788999999988765555567889999999999876322 1222223333332 2568899999998642
Q ss_pred CCCChH----HHHHHHHHcC---CeEEEeccCCCCCHHH
Q 028884 155 REVPAQ----DGIEYAEKNG---MFFIETSAKTADNINQ 186 (202)
Q Consensus 155 ~~~~~~----~~~~~~~~~~---~~~~~~s~~~~~~i~~ 186 (202)
.....+ +...+....+ .+++++||++|.|+.+
T Consensus 173 ~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 173 DQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 221111 2222333433 4589999999999873
No 255
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=99.67 E-value=2.7e-15 Score=112.81 Aligned_cols=171 Identities=19% Similarity=0.296 Sum_probs=128.0
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecC-CcEEEEEEEeCCChhhhhhcccccc
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD-STTVKFEIWDTAGQERYAALAPLYY 104 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~~~~~~~~~~ 104 (202)
.+.+-+..-+|+|+|..++||||||.+|.+.+ ...+..+..+.+..+.... ....++.+|-..|+..+..+....+
T Consensus 45 ~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al 121 (473)
T KOG3905|consen 45 TRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFAL 121 (473)
T ss_pred ccccCCCCCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcc
Confidence 34445567899999999999999999999854 3344455566555553322 2236788999999888888777766
Q ss_pred cCc----cEEEEEEeCCChhHH-HHHHHHHHHHHHcC-------------------------------------------
Q 028884 105 RGA----AVAVVVYDITSPDSF-NKAQYWVKELQKHG------------------------------------------- 136 (202)
Q Consensus 105 ~~~----d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~------------------------------------------- 136 (202)
... ..||++.|+++|+.+ +.+++|...++.+-
T Consensus 122 ~ats~aetlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~ 201 (473)
T KOG3905|consen 122 PATSLAETLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVG 201 (473)
T ss_pred cccCccceEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccccccc
Confidence 643 478999999999664 67788887554210
Q ss_pred ------------------CCCCeEEEEEeCCCCCC----C-------CCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 137 ------------------SPDIVMALVGNKADLHE----K-------REVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 137 ------------------~~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
+-++|++||++|+|... + .++....++.||..++..++.+|.++..|++-+
T Consensus 202 ~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidll 281 (473)
T KOG3905|consen 202 SSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLL 281 (473)
T ss_pred CccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHH
Confidence 22699999999999832 1 123345577899999999999999999999999
Q ss_pred HHHHHHHcCCCC
Q 028884 188 FEEIAKRLPRPS 199 (202)
Q Consensus 188 ~~~l~~~i~~~~ 199 (202)
+.+|+++++--.
T Consensus 282 yKYivhr~yG~~ 293 (473)
T KOG3905|consen 282 YKYIVHRSYGFP 293 (473)
T ss_pred HHHHHHHhcCcc
Confidence 999999987654
No 256
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.67 E-value=3.6e-15 Score=99.37 Aligned_cols=105 Identities=19% Similarity=0.268 Sum_probs=67.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hhhccccc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YAALAPLY 103 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~~~~~~ 103 (202)
+|+|+|.+|+|||||+|+|++....... .+..+.......+.+.+ ..+.++||||... +..... .
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~---~~~~~vDtpG~~~~~~~~~~~~~~~~~~~-~ 76 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN---KKFILVDTPGINDGESQDNDGKEIRKFLE-Q 76 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT---EEEEEEESSSCSSSSHHHHHHHHHHHHHH-H
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece---eeEEEEeCCCCcccchhhHHHHHHHHHHH-H
Confidence 6899999999999999999985432222 22233333333334433 4568999999531 112333 3
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 148 (202)
+..+|++++|+|.+++.. +.....+..++ .+.|+++|+||
T Consensus 77 ~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~----~~~~~i~v~NK 116 (116)
T PF01926_consen 77 ISKSDLIIYVVDASNPIT-EDDKNILRELK----NKKPIILVLNK 116 (116)
T ss_dssp HCTESEEEEEEETTSHSH-HHHHHHHHHHH----TTSEEEEEEES
T ss_pred HHHCCEEEEEEECCCCCC-HHHHHHHHHHh----cCCCEEEEEcC
Confidence 478999999999888421 22334444442 57899999998
No 257
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.66 E-value=7.6e-15 Score=120.58 Aligned_cols=117 Identities=15% Similarity=0.199 Sum_probs=77.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh--CCCCCC------------------CccccceeEEEEEEEecCCcEEEEEEEeC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPT------------------SKVTVGASFLSQTIALQDSTTVKFEIWDT 90 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 90 (202)
.+..+|+|+|++++|||||+++|+. +..... .....+.........+..+. ..+.+|||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~-~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRD-CLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCC-eEEEEEEC
Confidence 4567999999999999999999864 111000 00001111222222222222 78999999
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 91 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
||+..|.......++.+|++|+|+|+++... .....+++.... .++|+++++||+|+.
T Consensus 88 PG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~---~~~PiivviNKiD~~ 145 (527)
T TIGR00503 88 PGHEDFSEDTYRTLTAVDNCLMVIDAAKGVE-TRTRKLMEVTRL---RDTPIFTFMNKLDRD 145 (527)
T ss_pred CChhhHHHHHHHHHHhCCEEEEEEECCCCCC-HHHHHHHHHHHh---cCCCEEEEEECcccc
Confidence 9998887766777889999999999987521 223444443332 468999999999974
No 258
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=7.5e-16 Score=104.78 Aligned_cols=156 Identities=14% Similarity=0.172 Sum_probs=116.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..-|++++|-.|+|||||++-|.+... ..+.|+... +.....+.+ ..++.+|.+|+...+..|..|+..+|+++
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl-~qhvPTlHP--TSE~l~Ig~---m~ftt~DLGGH~qArr~wkdyf~~v~~iv 92 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRL-GQHVPTLHP--TSEELSIGG---MTFTTFDLGGHLQARRVWKDYFPQVDAIV 92 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccc-cccCCCcCC--ChHHheecC---ceEEEEccccHHHHHHHHHHHHhhhceeE
Confidence 456899999999999999999988664 334443322 233344444 78999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHH---HHcC--------------CeE
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA---EKNG--------------MFF 173 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~---~~~~--------------~~~ 173 (202)
+.+|+-|.+.|.+.+..++.+... ....+|+++.+||+|..... ++++.+... +..+ ..+
T Consensus 93 ~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~--se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~ev 170 (193)
T KOG0077|consen 93 YLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA--SEDELRFHLGLSNFTTGKGKVNLTDSNVRPLEV 170 (193)
T ss_pred eeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc--cHHHHHHHHHHHHHhcccccccccCCCCCeEEE
Confidence 999999999998888877776544 35689999999999976644 333322111 1111 136
Q ss_pred EEeccCCCCCHHHHHHHHHHHc
Q 028884 174 IETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i 195 (202)
+.||...+.+..+.|.|+...+
T Consensus 171 fmcsi~~~~gy~e~fkwl~qyi 192 (193)
T KOG0077|consen 171 FMCSIVRKMGYGEGFKWLSQYI 192 (193)
T ss_pred EEEEEEccCccceeeeehhhhc
Confidence 7788888888888888887654
No 259
>PRK12739 elongation factor G; Reviewed
Probab=99.65 E-value=1.8e-14 Score=122.55 Aligned_cols=117 Identities=15% Similarity=0.091 Sum_probs=82.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCC--CCC----------------CCccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDP----------------TSKVTVGASFLSQTIALQDSTTVKFEIWDTA 91 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 91 (202)
..+..+|+|+|++++|||||+++|+... ... .....++.+.....+.+.+ ..+.++|||
T Consensus 5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---~~i~liDTP 81 (691)
T PRK12739 5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG---HRINIIDTP 81 (691)
T ss_pred ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC---EEEEEEcCC
Confidence 3457899999999999999999997521 000 0122334444444444432 689999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
|+..+...+...++.+|++|+|+|+.++..... ...+..+.. .++|+++++||+|+..
T Consensus 82 G~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt-~~i~~~~~~---~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 82 GHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQS-ETVWRQADK---YGVPRIVFVNKMDRIG 139 (691)
T ss_pred CHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHH-HHHHHHHHH---cCCCEEEEEECCCCCC
Confidence 998888788888999999999999988743222 233333333 3688999999999864
No 260
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.64 E-value=6e-15 Score=113.97 Aligned_cols=160 Identities=18% Similarity=0.160 Sum_probs=96.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEE---------------------ecCCcEEEEEEEeCCCh-
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA---------------------LQDSTTVKFEIWDTAGQ- 93 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~i~D~~G~- 93 (202)
|+++|.|++|||||+++|++........+..+.+....... ..+...+.+++||+||.
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv 80 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLV 80 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCC
Confidence 57999999999999999998764322221111111111111 11123367999999997
Q ss_pred ---hhhhhcccc---cccCccEEEEEEeCCC---------------h-hHHHHH----HHH-HHHH-------HH-----
Q 028884 94 ---ERYAALAPL---YYRGAAVAVVVYDITS---------------P-DSFNKA----QYW-VKEL-------QK----- 134 (202)
Q Consensus 94 ---~~~~~~~~~---~~~~~d~~i~v~d~~~---------------~-~s~~~~----~~~-~~~i-------~~----- 134 (202)
.+...+... .++.+|++++|+|.+. | ..++.+ ..| +..+ .+
T Consensus 81 ~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~~~~ 160 (318)
T cd01899 81 PGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKADAE 160 (318)
T ss_pred CCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334443333 5889999999999973 2 112111 111 0000 00
Q ss_pred ---------------------------c----------------------CCCCCeEEEEEeCCCCCCCCCCChHHHHHH
Q 028884 135 ---------------------------H----------------------GSPDIVMALVGNKADLHEKREVPAQDGIEY 165 (202)
Q Consensus 135 ---------------------------~----------------------~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 165 (202)
. ....+|+++|+||.|+...... .. ...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~Dl~~~~~~--~~-~l~ 237 (318)
T cd01899 161 KTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKADIPDAENN--IS-KLR 237 (318)
T ss_pred CccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHHccChHHH--HH-HHH
Confidence 0 0124799999999997532211 11 111
Q ss_pred HHHcCCeEEEeccCCCCCHHHHHH-HHHHHcCCC
Q 028884 166 AEKNGMFFIETSAKTADNINQLFE-EIAKRLPRP 198 (202)
Q Consensus 166 ~~~~~~~~~~~s~~~~~~i~~~~~-~l~~~i~~~ 198 (202)
.......++.+||+.+.++.++.+ .+.+++++-
T Consensus 238 ~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~ 271 (318)
T cd01899 238 LKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD 271 (318)
T ss_pred hhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC
Confidence 222355699999999999999998 699998764
No 261
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=4.9e-15 Score=114.79 Aligned_cols=152 Identities=20% Similarity=0.217 Sum_probs=99.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCC--C-----------------------------CCCCccccceeEEEEEEEec
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQ--F-----------------------------DPTSKVTVGASFLSQTIALQ 78 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~--~-----------------------------~~~~~~~~~~~~~~~~~~~~ 78 (202)
.++.++++|+|+..+|||||+-+|+... + ........+.+.....+..+
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~ 83 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETD 83 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecC
Confidence 3568999999999999999999987631 0 11122223344434344332
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh---HH---HHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SF---NKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 79 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
.+.+.++|+||+..|-.....-...||++|||+|+++++ .| .+.++.+-..+... -..+||++||+|..
T Consensus 84 ---k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlG--i~~lIVavNKMD~v 158 (428)
T COG5256 84 ---KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLG--IKQLIVAVNKMDLV 158 (428)
T ss_pred ---CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcC--CceEEEEEEccccc
Confidence 268999999999988877777788899999999999873 11 12233333333333 23388889999987
Q ss_pred CCCCCChHHH----HHHHHHc-----CCeEEEeccCCCCCHHH
Q 028884 153 EKREVPAQDG----IEYAEKN-----GMFFIETSAKTADNINQ 186 (202)
Q Consensus 153 ~~~~~~~~~~----~~~~~~~-----~~~~~~~s~~~~~~i~~ 186 (202)
+-.+...++. ..+.+.. ..+++++|+..|.|+.+
T Consensus 159 ~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~ 201 (428)
T COG5256 159 SWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK 201 (428)
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence 6332222222 2233232 35699999999988754
No 262
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.62 E-value=3e-14 Score=121.21 Aligned_cols=116 Identities=15% Similarity=0.056 Sum_probs=81.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCC-----CC-------------ccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-----TS-------------KVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-----~~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
++..+|+|+|++++|||||+++|+...-.. .. ...++.......+.+.+ ..+.+|||||
T Consensus 8 ~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~---~~i~liDTPG 84 (689)
T TIGR00484 8 NRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG---HRINIIDTPG 84 (689)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC---eEEEEEECCC
Confidence 456799999999999999999997521100 00 11233333333444432 6899999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
+..+...+...++.+|++++|+|+.++...+.. .++..+.. .++|+++++||+|+..
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~ivviNK~D~~~ 141 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE-TVWRQANR---YEVPRIAFVNKMDKTG 141 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH-HHHHHHHH---cCCCEEEEEECCCCCC
Confidence 988877788889999999999999986444332 23333333 3688999999999863
No 263
>PRK09866 hypothetical protein; Provisional
Probab=99.62 E-value=4.2e-14 Score=115.85 Aligned_cols=109 Identities=16% Similarity=0.138 Sum_probs=72.8
Q ss_pred EEEEEeCCChhh-----hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC
Q 028884 84 KFEIWDTAGQER-----YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP 158 (202)
Q Consensus 84 ~~~i~D~~G~~~-----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~ 158 (202)
.+.|+||||... ........+..+|+++||+|.....+... ...++.+... +...|+++|+||+|+.+.....
T Consensus 231 QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~-~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAV-GQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred CEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhc-CCCCCEEEEEEcccCCCcccch
Confidence 578999999643 22233346889999999999987533322 2233444443 2235999999999986433323
Q ss_pred hHHHHHHHH----Hc---CCeEEEeccCCCCCHHHHHHHHHHH
Q 028884 159 AQDGIEYAE----KN---GMFFIETSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 159 ~~~~~~~~~----~~---~~~~~~~s~~~~~~i~~~~~~l~~~ 194 (202)
.+....+.. .. ...+|++||+.|.|++.+++.|...
T Consensus 309 kE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 344444432 11 2359999999999999999998874
No 264
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.61 E-value=1.6e-14 Score=109.44 Aligned_cols=162 Identities=19% Similarity=0.118 Sum_probs=104.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccCc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRGA 107 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~~ 107 (202)
-|.++|.|++||||||+.+..-+.....++..+....--.+.+... -.|.+-|.||.-+ ........+..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~~~--~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVDGG--ESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCCcccCCccccccCcccEEEecCC--CcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 3558999999999999999987654444444444333333444222 3699999999432 111122335568
Q ss_pred cEEEEEEeCCChh---HHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEE-EeccCCC
Q 028884 108 AVAVVVYDITSPD---SFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFI-ETSAKTA 181 (202)
Q Consensus 108 d~~i~v~d~~~~~---s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~~ 181 (202)
-+++.|+|++..+ -.+.......++..+ .-.++|.+||+||+|+....+........+.+..+.... .+|+.++
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred heeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcc
Confidence 8999999998543 233444333444333 235788999999999765544434444445544454422 2999999
Q ss_pred CCHHHHHHHHHHHcCCC
Q 028884 182 DNINQLFEEIAKRLPRP 198 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~ 198 (202)
.|++++...+.+.+.+.
T Consensus 319 ~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 319 EGLDELLRALAELLEET 335 (369)
T ss_pred cCHHHHHHHHHHHHHHh
Confidence 99999999988877654
No 265
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=9e-14 Score=118.26 Aligned_cols=117 Identities=16% Similarity=0.116 Sum_probs=80.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHh--CCCCC---C-------------CccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVR--GQFDP---T-------------SKVTVGASFLSQTIALQDSTTVKFEIWDTA 91 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 91 (202)
.++..+|+|+|++++|||||+++|+. +.... . .....+.+.....+.+.+ ..+.++|||
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~---~~~~liDTP 83 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD---HRINIIDTP 83 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC---eEEEEEeCC
Confidence 34578999999999999999999974 21100 0 122233333333444432 689999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
|+..+.......+..+|++++|+|+..+...+. ...+..+... ++|+++++||+|+..
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt-~~~~~~~~~~---~~p~iv~vNK~D~~~ 141 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQS-ETVWRQADKY---KVPRIAFVNKMDRTG 141 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhh-HHHHHHHHHc---CCCEEEEEECCCCCC
Confidence 998887667777888999999999987643333 2233334433 678999999999863
No 266
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.60 E-value=3.8e-14 Score=114.26 Aligned_cols=168 Identities=21% Similarity=0.323 Sum_probs=125.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCC-cEEEEEEEeCCChhhhhhcccccccCc-
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS-TTVKFEIWDTAGQERYAALAPLYYRGA- 107 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~D~~G~~~~~~~~~~~~~~~- 107 (202)
....-+|+|+|..++||||||.+|.+.. ...++.+.+|.+..+...+. ...++.+|...|...+..+....+...
T Consensus 22 ~~~~k~vlvlG~~~~GKttli~~L~~~e---~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~ 98 (472)
T PF05783_consen 22 LPSEKSVLVLGDKGSGKTTLIARLQGIE---DPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPEN 98 (472)
T ss_pred CCCCceEEEEeCCCCchHHHHHHhhccC---CCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCccc
Confidence 3456899999999999999999987643 34456677777766654432 335789999998777777777766632
Q ss_pred ---cEEEEEEeCCChhHH-HHHHHHHHHHHHcC-----------------------------------------------
Q 028884 108 ---AVAVVVYDITSPDSF-NKAQYWVKELQKHG----------------------------------------------- 136 (202)
Q Consensus 108 ---d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~----------------------------------------------- 136 (202)
-++++|+|.+.|+.+ +.+.+|+..++.+-
T Consensus 99 l~~t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~ 178 (472)
T PF05783_consen 99 LPNTLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSD 178 (472)
T ss_pred ccceEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCcccccccccccc
Confidence 378889999999775 56777776543210
Q ss_pred ---------------CCCCeEEEEEeCCCCCC----C-------CCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 137 ---------------SPDIVMALVGNKADLHE----K-------REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 137 ---------------~~~~p~ivv~nK~D~~~----~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+.++|++||++|+|... + .++..+.++.+|..+++.++.+|++...+++.++.+
T Consensus 179 ~~~~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~y 258 (472)
T PF05783_consen 179 DESVLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKY 258 (472)
T ss_pred cccccCCCCCcccccccCcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHH
Confidence 11589999999999642 1 123334477788899999999999999999999999
Q ss_pred HHHHcCCCCC
Q 028884 191 IAKRLPRPSP 200 (202)
Q Consensus 191 l~~~i~~~~~ 200 (202)
|.+.++....
T Consensus 259 i~h~l~~~~f 268 (472)
T PF05783_consen 259 ILHRLYGFPF 268 (472)
T ss_pred HHHHhccCCC
Confidence 9999887643
No 267
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.60 E-value=1.6e-15 Score=107.24 Aligned_cols=118 Identities=21% Similarity=0.324 Sum_probs=71.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccc---cccCccE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPL---YYRGAAV 109 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~---~~~~~d~ 109 (202)
.-.|+++|+.|+|||+|..+|..+...+....- .... ...........+.++|+||+++.+..... +...+-+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e~n~---~~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-ENNI---AYNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---S-SEEE---ECCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-cCCc---eEEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 457999999999999999999998543333221 1111 11111222247899999999988754433 4778999
Q ss_pred EEEEEeCCC-hhHHHHHHHHHHH-HHHc--CCCCCeEEEEEeCCCCCCC
Q 028884 110 AVVVYDITS-PDSFNKAQYWVKE-LQKH--GSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 110 ~i~v~d~~~-~~s~~~~~~~~~~-i~~~--~~~~~p~ivv~nK~D~~~~ 154 (202)
+|||+|.+. ...+.+..+++-. +... .....|++|++||.|+...
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 999999984 3445555444333 3222 3467999999999998654
No 268
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.60 E-value=2.5e-14 Score=112.18 Aligned_cols=164 Identities=17% Similarity=0.225 Sum_probs=117.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCC--C------------CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQF--D------------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~--~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
..-+|+++.+...|||||+..|+.+.- . ......-+..+-.++..+..+. +++.++||||+..|.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~-~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNG-TRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCC-eEEEEecCCCcCCcc
Confidence 356899999999999999999987521 1 1112233444555554444333 799999999999999
Q ss_pred hcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--CChHHHHHHHH------Hc
Q 028884 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAE------KN 169 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~------~~ 169 (202)
...+..+..+|++++++|+.++. +.+.+..+..... .+.+.|||+||+|.+..+. +..+....+.. ++
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGp-MPQTrFVlkKAl~---~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGP-MPQTRFVLKKALA---LGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCC-CCchhhhHHHHHH---cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhC
Confidence 99999999999999999999763 2333444443333 3566899999999876543 22222222222 35
Q ss_pred CCeEEEeccCCC----------CCHHHHHHHHHHHcCCCCC
Q 028884 170 GMFFIETSAKTA----------DNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 170 ~~~~~~~s~~~~----------~~i~~~~~~l~~~i~~~~~ 200 (202)
+++++..|++.| .++.-+|+.|++++..|..
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred CCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 778999998888 4799999999999998863
No 269
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=6.8e-15 Score=110.44 Aligned_cols=168 Identities=19% Similarity=0.174 Sum_probs=114.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc---cccceeEEEEE--------------EEe----c-C----CcEEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK---VTVGASFLSQT--------------IAL----Q-D----STTVK 84 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~--------------~~~----~-~----~~~~~ 84 (202)
++.++|.++|+...|||||...|.+-..+.... ..++....+.. +.. . . .-...
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 789999999999999999999998743211110 01111000000 000 0 0 01257
Q ss_pred EEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--CChHHH
Q 028884 85 FEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDG 162 (202)
Q Consensus 85 ~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~ 162 (202)
+.|+|.||++-.-+....-..-.|++++|++++.+-...+.++.+..+.-..- +.++++.||.|+...+. ...+++
T Consensus 88 VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi--k~iiIvQNKIDlV~~E~AlE~y~qI 165 (415)
T COG5257 88 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI--KNIIIVQNKIDLVSRERALENYEQI 165 (415)
T ss_pred EEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc--ceEEEEecccceecHHHHHHHHHHH
Confidence 89999999987665555445557999999999987655666777766666542 34899999999876432 233444
Q ss_pred HHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 163 IEYAEK---NGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 163 ~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
.+|.+- .+.+++++||..+.|++.++++|.+.|..+..
T Consensus 166 k~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~r 206 (415)
T COG5257 166 KEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPER 206 (415)
T ss_pred HHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCcc
Confidence 444443 36789999999999999999999999988753
No 270
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=1.1e-14 Score=114.73 Aligned_cols=167 Identities=20% Similarity=0.184 Sum_probs=105.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhhh--------h-
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQERY--------A- 97 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~--------~- 97 (202)
+..+..++|+++|+||+|||||+|.|...+.....+...++ +.....+...+ +.+.+.||.|..+- .
T Consensus 263 e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G---~~v~L~DTAGiRe~~~~~iE~~gI 339 (531)
T KOG1191|consen 263 ERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG---VPVRLSDTAGIREESNDGIEALGI 339 (531)
T ss_pred HHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC---eEEEEEeccccccccCChhHHHhH
Confidence 33456799999999999999999999998876665543333 33333333322 68999999996541 0
Q ss_pred hcccccccCccEEEEEEeCCC--hhHHHHHHHHHHHHHHc------CCCCCeEEEEEeCCCCCCC-CCCChHHHHHHHHH
Q 028884 98 ALAPLYYRGAAVAVVVYDITS--PDSFNKAQYWVKELQKH------GSPDIVMALVGNKADLHEK-REVPAQDGIEYAEK 168 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~------~~~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~~ 168 (202)
......+..+|++++|+|+.. -.+-..+...++..... .....|++++.||.|+... .+............
T Consensus 340 ~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~ 419 (531)
T KOG1191|consen 340 ERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAE 419 (531)
T ss_pred HHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccCCceeccccc
Confidence 112334667999999999943 33323333444433221 1234789999999998665 22111111111111
Q ss_pred ---cCCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 169 ---NGMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 169 ---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
..-.+.++|+++++++..+.+.|.+.+..
T Consensus 420 ~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 420 GRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred cCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 11235669999999999999998876643
No 271
>PRK12740 elongation factor G; Reviewed
Probab=99.55 E-value=6.5e-14 Score=119.10 Aligned_cols=108 Identities=19% Similarity=0.173 Sum_probs=73.9
Q ss_pred EcCCCCcHHHHHHHHHhCCCC--------C----------CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc
Q 028884 39 LGDSGVGKSCIVLRFVRGQFD--------P----------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA 100 (202)
Q Consensus 39 ~G~~~~GKSsli~~l~~~~~~--------~----------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~ 100 (202)
+|++++|||||+++|+...-. . .....++.......+.+.+ +.+.+|||||+..+...+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~---~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG---HKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC---EEEEEEECCCcHHHHHHH
Confidence 699999999999999653210 0 0012222333333333322 689999999998887777
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
..++..+|++++|+|++..........| ..+.. .++|+++|+||+|+..
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~~~~-~~~~~---~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTETVW-RQAEK---YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHHHHH-HHHHH---cCCCEEEEEECCCCCC
Confidence 8888999999999999987544433322 33332 3689999999999763
No 272
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.54 E-value=2.9e-13 Score=107.63 Aligned_cols=84 Identities=18% Similarity=0.150 Sum_probs=54.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEE---------------------ecCCcEEEEEEEeCCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIA---------------------LQDSTTVKFEIWDTAG 92 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~i~D~~G 92 (202)
++|+++|.|++|||||+|+|++........+..+.+...-... ..+.....+++||+||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aG 81 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAG 81 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCC
Confidence 6899999999999999999998765432222222122221111 1112236789999999
Q ss_pred hh----hhhhcccc---cccCccEEEEEEeCC
Q 028884 93 QE----RYAALAPL---YYRGAAVAVVVYDIT 117 (202)
Q Consensus 93 ~~----~~~~~~~~---~~~~~d~~i~v~d~~ 117 (202)
.. ....+-.. .++.+|++++|+|..
T Consensus 82 l~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 82 LVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred cCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 52 22222223 388999999999997
No 273
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=2e-13 Score=96.96 Aligned_cols=156 Identities=21% Similarity=0.264 Sum_probs=99.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc---CccE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR---GAAV 109 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~---~~d~ 109 (202)
+-.|+++|+.+||||+|.-+|..+........ +. .....+.+.+ ..+.++|.||+.+.+.....+++ .+-+
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtS-ie--pn~a~~r~gs---~~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTS-IE--PNEATYRLGS---ENVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCccCeeee-ec--cceeeEeecC---cceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 45799999999999999999998754333221 11 1111122222 34899999999998877666666 6889
Q ss_pred EEEEEeCCC-hhHHHHH-HHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCCCC------hHHHH----------------
Q 028884 110 AVVVYDITS-PDSFNKA-QYWVKELQKH--GSPDIVMALVGNKADLHEKREVP------AQDGI---------------- 163 (202)
Q Consensus 110 ~i~v~d~~~-~~s~~~~-~~~~~~i~~~--~~~~~p~ivv~nK~D~~~~~~~~------~~~~~---------------- 163 (202)
++||+|... ....... ..+|..+... +....|+++++||.|+....... +.++.
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRsa~~~~~~ed 191 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRSALRSISDED 191 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHhhhhcccccc
Confidence 999999863 2223333 3344444333 46678899999999985432100 00000
Q ss_pred --------------HHH--HHcCCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 164 --------------EYA--EKNGMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 164 --------------~~~--~~~~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
+|. ....+.+.++|++++ +++++-+||.+.+
T Consensus 192 ~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~l 238 (238)
T KOG0090|consen 192 IAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREAL 238 (238)
T ss_pred ccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHhC
Confidence 000 012245788999998 8999999988764
No 274
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.53 E-value=2.2e-13 Score=103.65 Aligned_cols=149 Identities=20% Similarity=0.218 Sum_probs=104.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCC---------------------------------CCCCccccceeEEEEEEEe
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF---------------------------------DPTSKVTVGASFLSQTIAL 77 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~ 77 (202)
+..++.+-+|...-||||||-||+.... .......++.+..+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 4579999999999999999999986411 1122344666666666654
Q ss_pred cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC
Q 028884 78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (202)
Q Consensus 78 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~ 157 (202)
.. ..|.+-||||++.|......-...||++|+++|+..+- +++.+. ...+...-. -..+++++||+|+..-.+.
T Consensus 84 ~K---RkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gv-l~QTrR-Hs~I~sLLG-IrhvvvAVNKmDLvdy~e~ 157 (431)
T COG2895 84 EK---RKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGV-LEQTRR-HSFIASLLG-IRHVVVAVNKMDLVDYSEE 157 (431)
T ss_pred cc---ceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhh-HHHhHH-HHHHHHHhC-CcEEEEEEeeecccccCHH
Confidence 44 67999999999999887777778899999999997652 222222 222222211 1338888999999875443
Q ss_pred C----hHHHHHHHHHcCC---eEEEeccCCCCCHH
Q 028884 158 P----AQDGIEYAEKNGM---FFIETSAKTADNIN 185 (202)
Q Consensus 158 ~----~~~~~~~~~~~~~---~~~~~s~~~~~~i~ 185 (202)
. ..+-..++..++. .++++||..|+|+.
T Consensus 158 ~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 158 VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence 2 3344556666665 48999999999875
No 275
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.53 E-value=1.5e-13 Score=101.04 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=92.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCc--cccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhh-c---c
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAA-L---A 100 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~-~---~ 100 (202)
++|+|+|.+|+||||++|.+++........ ...+...........+ ..+.++||||... ... . .
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g---~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG---RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT---EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc---eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 689999999999999999999977544331 1222222222223222 5899999999321 111 1 1
Q ss_pred cccccCccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC-------hHHHHHHHHHcCCe
Q 028884 101 PLYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-------AQDGIEYAEKNGMF 172 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-------~~~~~~~~~~~~~~ 172 (202)
....++.+++|||+....- ..-....+++..+.... .-..++||+|..|........ ......+.+.++-.
T Consensus 78 ~~~~~g~ha~llVi~~~r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLGRFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp HHTTT-ESEEEEEEETTB-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HhccCCCeEEEEEEecCcchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCE
Confidence 2235678999999999832 11222233333333221 123488889988865544311 12244566677888
Q ss_pred EEEeccC------CCCCHHHHHHHHHHHcCCCC
Q 028884 173 FIETSAK------TADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 173 ~~~~s~~------~~~~i~~~~~~l~~~i~~~~ 199 (202)
|+.++.+ ....+.++++.+-+.+.++.
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~ 189 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENG 189 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcC
Confidence 8887766 33457888888777765543
No 276
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.51 E-value=1.1e-12 Score=105.58 Aligned_cols=165 Identities=20% Similarity=0.254 Sum_probs=121.4
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
...+.+++.|+|+.++|||.|++.++++.+......+....+....+... +....+.+.|.+-. ....+...- ..+|
T Consensus 421 ~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~-g~~k~LiL~ei~~~-~~~~l~~ke-~~cD 497 (625)
T KOG1707|consen 421 TDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVK-GQQKYLILREIGED-DQDFLTSKE-AACD 497 (625)
T ss_pred ccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeec-cccceEEEeecCcc-ccccccCcc-ceee
Confidence 33568999999999999999999999988877544444455544444444 44356777777654 222232222 6799
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe-EEEeccCCCCCHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQL 187 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~ 187 (202)
+++++||.+++.+|..+...++.-... .+.||++|++|+|+.+..+.......+++.+++++ .+.+|.+.... .++
T Consensus 498 v~~~~YDsS~p~sf~~~a~v~~~~~~~--~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~l 574 (625)
T KOG1707|consen 498 VACLVYDSSNPRSFEYLAEVYNKYFDL--YKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NEL 574 (625)
T ss_pred eEEEecccCCchHHHHHHHHHHHhhhc--cCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-chH
Confidence 999999999999999887766655443 57999999999999876554444448889998886 67777775333 899
Q ss_pred HHHHHHHcCCCC
Q 028884 188 FEEIAKRLPRPS 199 (202)
Q Consensus 188 ~~~l~~~i~~~~ 199 (202)
|..|+.+..-|+
T Consensus 575 f~kL~~~A~~Ph 586 (625)
T KOG1707|consen 575 FIKLATMAQYPH 586 (625)
T ss_pred HHHHHHhhhCCC
Confidence 999999887765
No 277
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.50 E-value=7.9e-13 Score=99.09 Aligned_cols=123 Identities=16% Similarity=0.153 Sum_probs=71.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhhhh---------
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQERYA--------- 97 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~--------- 97 (202)
......++|+|+|.+|+|||||+|++++.......... .+......... .+. ..+.++||||.....
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~--~~g-~~i~vIDTPGl~~~~~~~~~~~~~ 102 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGT--VDG-FKLNIIDTPGLLESVMDQRVNRKI 102 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEE--ECC-eEEEEEECCCcCcchhhHHHHHHH
Confidence 45567899999999999999999999997654332221 12222111111 122 578999999965331
Q ss_pred -hccccccc--CccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCC--CCeEEEEEeCCCCCCC
Q 028884 98 -ALAPLYYR--GAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSP--DIVMALVGNKADLHEK 154 (202)
Q Consensus 98 -~~~~~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~D~~~~ 154 (202)
.....++. ..|++++|..++.. .... ....++.+...... -.++++|.||+|...+
T Consensus 103 ~~~I~~~l~~~~idvIL~V~rlD~~r~~~~-d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 103 LSSIKRYLKKKTPDVVLYVDRLDMYRRDYL-DLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred HHHHHHHHhccCCCEEEEEEcCCCCCCCHH-HHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 00122332 46888888766542 1111 12233333322111 2458999999998643
No 278
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=1.6e-13 Score=108.46 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=109.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hhh-c
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YAA-L 99 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~~-~ 99 (202)
++.-.++|+|-|++|||||+|.+.............+.... +...+-...+++++||||... ..+ .
T Consensus 166 p~trTlllcG~PNVGKSSf~~~vtradvevqpYaFTTksL~---vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT 242 (620)
T KOG1490|consen 166 PNTRTLLVCGYPNVGKSSFNNKVTRADDEVQPYAFTTKLLL---VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT 242 (620)
T ss_pred CCcCeEEEecCCCCCcHhhcccccccccccCCcccccchhh---hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence 44678899999999999999999987765444433222222 222233346899999999322 111 1
Q ss_pred ccccccCccEEEEEEeCC--ChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHH--HHH-HHHHcCCeEE
Q 028884 100 APLYYRGAAVAVVVYDIT--SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD--GIE-YAEKNGMFFI 174 (202)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~--~~~-~~~~~~~~~~ 174 (202)
....++ .+|+|+.|++ ++.|.+...+.++.|... -.++|.|+|+||+|+......+.+. ..+ +...-+++++
T Consensus 243 ALAHLr--aaVLYfmDLSe~CGySva~QvkLfhsIKpL-FaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~ 319 (620)
T KOG1490|consen 243 ALAHLR--SAVLYFMDLSEMCGYSVAAQVKLYHSIKPL-FANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVV 319 (620)
T ss_pred HHHHhh--hhheeeeechhhhCCCHHHHHHHHHHhHHH-hcCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEE
Confidence 111222 5788899988 567888888888888766 2478899999999987766554433 222 2333458899
Q ss_pred EeccCCCCCHHHHHHHHHHHcC
Q 028884 175 ETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 175 ~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+.|+.+.+|+.++-...++.+.
T Consensus 320 ~tS~~~eegVm~Vrt~ACe~LL 341 (620)
T KOG1490|consen 320 QTSCVQEEGVMDVRTTACEALL 341 (620)
T ss_pred EecccchhceeeHHHHHHHHHH
Confidence 9999999999988777766654
No 279
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.48 E-value=1.6e-12 Score=99.11 Aligned_cols=120 Identities=15% Similarity=0.159 Sum_probs=68.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------hcccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-------ALAPL 102 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-------~~~~~ 102 (202)
.+.++|+|+|.+|+||||++|++++......... ..+.......... + ...+.++||||..... .....
T Consensus 36 ~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-~--G~~l~VIDTPGL~d~~~~~e~~~~~ik~ 112 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-A--GFTLNIIDTPGLIEGGYINDQAVNIIKR 112 (313)
T ss_pred ccceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-C--CeEEEEEECCCCCchHHHHHHHHHHHHH
Confidence 5689999999999999999999998764322211 1111111111111 2 2689999999955321 11111
Q ss_pred cc--cCccEEEEEEeCCC--hhHH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 103 YY--RGAAVAVVVYDITS--PDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 103 ~~--~~~d~~i~v~d~~~--~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
++ ...|++|||..++. .... ..+.+.+..+... ..-.+.+|++|+.|....
T Consensus 113 ~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~-~iw~~~IVVfTh~d~~~p 168 (313)
T TIGR00991 113 FLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGK-DIWRKSLVVLTHAQFSPP 168 (313)
T ss_pred HhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhh-hhhccEEEEEECCccCCC
Confidence 11 25899999966542 2211 2222222222211 112458999999997643
No 280
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.47 E-value=1.2e-12 Score=101.76 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=83.7
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCh----------hHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----------DSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~ 151 (202)
+.+.+||++|+...+..|..++.+++++|+|+|+++. ..+.+....++.+... .-.++|++|++||.|+
T Consensus 161 ~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~ 240 (317)
T cd00066 161 LKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDL 240 (317)
T ss_pred eEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHH
Confidence 5788999999999999999999999999999999974 3344444444443332 2357999999999996
Q ss_pred CCC----------------CCCChHHHHHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 152 HEK----------------REVPAQDGIEYAEK----------NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 152 ~~~----------------~~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
.++ .....+.+..+... ..+.+..++|.+..++..+|+.+.+.|....
T Consensus 241 f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~~ 314 (317)
T cd00066 241 FEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQNN 314 (317)
T ss_pred HHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHHH
Confidence 421 02233444444332 1233567899999999999999998876544
No 281
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.47 E-value=1.9e-12 Score=112.70 Aligned_cols=146 Identities=18% Similarity=0.147 Sum_probs=96.0
Q ss_pred cHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcE---------------EEEEEEeCCChhhhhhcccccccCccE
Q 028884 45 GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTT---------------VKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 45 GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
+||||+.++.+........-.++.++....+.+..... -.+.||||||++.|..+.......+|+
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~aDi 552 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLADL 552 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccCCE
Confidence 39999999998776555555555555544444432110 138999999999998887778888999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCCh------------HH-HHHH----------H
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA------------QD-GIEY----------A 166 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~------------~~-~~~~----------~ 166 (202)
+++|+|++++...+ ....+..+.. .++|+++|+||+|+........ +. ..++ .
T Consensus 553 vlLVVDa~~Gi~~q-T~e~I~~lk~---~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~~v~~~L 628 (1049)
T PRK14845 553 AVLVVDINEGFKPQ-TIEAINILRQ---YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLYELIGKL 628 (1049)
T ss_pred EEEEEECcccCCHh-HHHHHHHHHH---cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHHHHhhHH
Confidence 99999998742211 1222233333 2679999999999864322100 00 0000 0
Q ss_pred HH---------------cCCeEEEeccCCCCCHHHHHHHHHHH
Q 028884 167 EK---------------NGMFFIETSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 167 ~~---------------~~~~~~~~s~~~~~~i~~~~~~l~~~ 194 (202)
.. ...+++++||++|.|+++++.+|...
T Consensus 629 ~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 629 YELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 11 13578999999999999999888643
No 282
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.46 E-value=2.4e-12 Score=99.37 Aligned_cols=116 Identities=17% Similarity=0.284 Sum_probs=80.5
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHH-------HHHHHHHHHHHHcC----CCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSF-------NKAQYWVKELQKHG----SPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~-------~~~~~~~~~i~~~~----~~~~p~ivv~nK~D~ 151 (202)
..+.++|.+|+..-+..|.+++.+++++|+|+++++.+-. ..+.+-++.+...+ =.+.++|+++||.|+
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDL 274 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHH
Confidence 5789999999999999999999999999999999875321 12222223333322 236889999999998
Q ss_pred CCCC---------------CCChHHHHHHHHH--------c--CCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 152 HEKR---------------EVPAQDGIEYAEK--------N--GMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 152 ~~~~---------------~~~~~~~~~~~~~--------~--~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
-++. ....+++..+... . .+-+..+.|.+..+|+.+|+++.+.|...
T Consensus 275 FeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~ 346 (354)
T KOG0082|consen 275 FEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQN 346 (354)
T ss_pred HHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHH
Confidence 5321 1233344433322 1 22356678999999999999999887654
No 283
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=4e-13 Score=114.76 Aligned_cols=118 Identities=16% Similarity=0.165 Sum_probs=77.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC---------------CCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ---------------FDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~---------------~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
....+|+++|+.++|||||+++|+... +... ...+.........+... ...+.+.+|||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~-~~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYE-GNEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeec-CCceEEEEEeCCC
Confidence 356899999999999999999998521 1100 01111111111122222 3347899999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
+..|.......++.+|++|+|+|+..+...+....| ..+. ..+.|+++++||+|...
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~-~~~~---~~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVL-RQAL---KENVKPVLFINKVDRLI 152 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHH-HHHH---HcCCCEEEEEEChhccc
Confidence 998887778889999999999999875322222222 2222 23577889999999754
No 284
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.44 E-value=4.8e-13 Score=100.27 Aligned_cols=96 Identities=22% Similarity=0.288 Sum_probs=77.9
Q ss_pred hhhhhcccccccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF 172 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~ 172 (202)
+++..+.+.+++++|++++|+|+.++. ++..+.+|+..+.. .++|+++|+||+|+.+......+.. ......+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~---~~i~~vIV~NK~DL~~~~~~~~~~~-~~~~~~g~~ 99 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA---QNIEPIIVLNKIDLLDDEDMEKEQL-DIYRNIGYQ 99 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECcccCCCHHHHHHHH-HHHHHCCCe
Confidence 667788888999999999999999886 89999999887654 4789999999999975443332333 334457889
Q ss_pred EEEeccCCCCCHHHHHHHHHH
Q 028884 173 FIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 173 ~~~~s~~~~~~i~~~~~~l~~ 193 (202)
++++|++++.|++++|+.+..
T Consensus 100 v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 100 VLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred EEEEecCCchhHHHHHhhhcC
Confidence 999999999999999998764
No 285
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.44 E-value=2.7e-12 Score=93.29 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=66.3
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 162 (202)
..+.++++.|..-...... .-+|.+|.|+|+.+.++... .+...+ ...-++++||+|+.+......+..
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~--~~~~qi------~~ad~~~~~k~d~~~~~~~~~~~~ 160 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR--KGGPGI------TRSDLLVINKIDLAPMVGADLGVM 160 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh--hhHhHh------hhccEEEEEhhhccccccccHHHH
Confidence 4677888888432222221 12688999999998654321 111111 112388899999875322233333
Q ss_pred HHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 163 IEYAEK--NGMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 163 ~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
.+..+. .+.+++++|+++|.|+.++|++|.++.+-
T Consensus 161 ~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~ 197 (199)
T TIGR00101 161 ERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYALL 197 (199)
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 333333 46789999999999999999999987653
No 286
>PRK13768 GTPase; Provisional
Probab=99.43 E-value=9.9e-13 Score=99.09 Aligned_cols=112 Identities=21% Similarity=0.192 Sum_probs=69.8
Q ss_pred EEEEEeCCChhhh---hhccccccc---C--ccEEEEEEeCCChhHHHHH--HHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 84 KFEIWDTAGQERY---AALAPLYYR---G--AAVAVVVYDITSPDSFNKA--QYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 84 ~~~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
.+.+||+||..+. +..+..+++ . .+++++++|+......... ..|+...... ..++|+++|+||+|+..
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~-~~~~~~i~v~nK~D~~~ 176 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQL-RLGLPQIPVLNKADLLS 176 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHH-HcCCCEEEEEEhHhhcC
Confidence 6899999997653 222222222 2 7999999999754322221 2233222222 24789999999999875
Q ss_pred CCCCChHH--HH------------------------HHHHHcC--CeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 154 KREVPAQD--GI------------------------EYAEKNG--MFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 154 ~~~~~~~~--~~------------------------~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
..+..... .. +.....+ .+++++|++++.|+++++++|.+.+.
T Consensus 177 ~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 177 EEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred chhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 43221100 00 1111223 47899999999999999999998875
No 287
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.42 E-value=3.9e-12 Score=108.98 Aligned_cols=119 Identities=13% Similarity=0.080 Sum_probs=77.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCC--CCC--------------ccccceeEEEEEEEe-cCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD--PTS--------------KVTVGASFLSQTIAL-QDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~~~--------------~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~ 93 (202)
++..+|+++|+.++|||||+++|+...-. ... ...++.......+.+ .++....+.++||||+
T Consensus 18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 45678999999999999999999863210 000 000111111111111 1223378999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
..|.......++.+|++|+|+|+..+.......-| ...... +.|.++++||+|+..
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~-~~~~~~---~~~~iv~iNK~D~~~ 153 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVL-RQALRE---RVKPVLFINKVDRLI 153 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHH-HHHHHc---CCCeEEEEECchhhc
Confidence 98888788889999999999999876333222222 222222 467899999999753
No 288
>PTZ00258 GTP-binding protein; Provisional
Probab=99.42 E-value=4.9e-12 Score=99.82 Aligned_cols=88 Identities=16% Similarity=0.106 Sum_probs=58.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQER 95 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~ 95 (202)
....++|.++|.||+|||||+|.|.+........+..+.+.....+.+.+.. ...+.++|+||...
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3567899999999999999999998876543333443434434334333221 23589999999532
Q ss_pred -------hhhcccccccCccEEEEEEeCC
Q 028884 96 -------YAALAPLYYRGAAVAVVVYDIT 117 (202)
Q Consensus 96 -------~~~~~~~~~~~~d~~i~v~d~~ 117 (202)
........++.+|++++|+|..
T Consensus 98 ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 1122233467899999999973
No 289
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.41 E-value=1.4e-12 Score=113.08 Aligned_cols=119 Identities=16% Similarity=0.120 Sum_probs=80.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC--C----------C----CccccceeEEEEEEEec-------------CC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD--P----------T----SKVTVGASFLSQTIALQ-------------DS 80 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~--~----------~----~~~~~~~~~~~~~~~~~-------------~~ 80 (202)
..+..+|+|+|+.++|||||+++|+...-. . . .....+.......+.+. ..
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345789999999999999999999864310 0 0 00111111111112221 12
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 81 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
..+.+.++||||+..|.......++.+|++|+|+|+..+-......-| ..+. ..++|+++++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~-~~~~---~~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVL-RQAL---GERIRPVLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHH-HHHH---HCCCCEEEEEECCccc
Confidence 247889999999999988888889999999999999987443332322 2233 3468899999999976
No 290
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.41 E-value=1.9e-12 Score=95.57 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=95.0
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCC---CCC----CccccceeEEEEEEEe---------------c-CCc--
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF---DPT----SKVTVGASFLSQTIAL---------------Q-DST-- 81 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~----~~~~~~~~~~~~~~~~---------------~-~~~-- 81 (202)
+...++...|+|+|..|||||||+.+|..... .+. .+|.........++.+ . ++.
T Consensus 13 ~~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~ 92 (366)
T KOG1532|consen 13 SGAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIV 92 (366)
T ss_pred cccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchh
Confidence 34456788999999999999999999976321 111 1111111110111100 0 111
Q ss_pred ----------------------EEEEEEEeCCChhhhh------hccccccc--CccEEEEEEeCCChhHHHH-HHHHHH
Q 028884 82 ----------------------TVKFEIWDTAGQERYA------ALAPLYYR--GAAVAVVVYDITSPDSFNK-AQYWVK 130 (202)
Q Consensus 82 ----------------------~~~~~i~D~~G~~~~~------~~~~~~~~--~~d~~i~v~d~~~~~s~~~-~~~~~~ 130 (202)
...+.++||||+-+.- ......+. ..-++++++|..+..+... +.+.+=
T Consensus 93 TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlY 172 (366)
T KOG1532|consen 93 TSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLY 172 (366)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHH
Confidence 1468999999975421 11111122 2357888999765433222 122211
Q ss_pred HHHHcCCCCCeEEEEEeCCCCCCCCCC--------ChHHHHH-------------HH-----HHcCCeEEEeccCCCCCH
Q 028884 131 ELQKHGSPDIVMALVGNKADLHEKREV--------PAQDGIE-------------YA-----EKNGMFFIETSAKTADNI 184 (202)
Q Consensus 131 ~i~~~~~~~~p~ivv~nK~D~~~~~~~--------~~~~~~~-------------~~-----~~~~~~~~~~s~~~~~~i 184 (202)
.-.-......|+|++.||+|+...... ..+++.. .+ .-.++..+-+|+.+|.|.
T Consensus 173 AcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ 252 (366)
T KOG1532|consen 173 ACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGF 252 (366)
T ss_pred HHHHHHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcH
Confidence 111123457999999999998653210 0000110 00 012467899999999999
Q ss_pred HHHHHHHHHHcCC
Q 028884 185 NQLFEEIAKRLPR 197 (202)
Q Consensus 185 ~~~~~~l~~~i~~ 197 (202)
+++|..+.+.+.+
T Consensus 253 ddf~~av~~~vdE 265 (366)
T KOG1532|consen 253 DDFFTAVDESVDE 265 (366)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 291
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.41 E-value=9e-13 Score=85.82 Aligned_cols=136 Identities=21% Similarity=0.200 Sum_probs=91.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----hhhhhcccccccCccEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----ERYAALAPLYYRGAAVA 110 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----~~~~~~~~~~~~~~d~~ 110 (202)
||+++|..|+|||||.+.|.+...-. ..+... .+.+ =-.+||||. ..+..........+|++
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQAv-------e~~d-----~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi 68 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQAV-------EFND-----KGDIDTPGEYFEHPRWYHALITTLQDADVI 68 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhh--ccccee-------eccC-----ccccCCchhhhhhhHHHHHHHHHhhcccee
Confidence 79999999999999999999854321 111111 1111 114699993 22333334456679999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe-EEEeccCCCCCHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-FIETSAKTADNINQLFE 189 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i~~~~~ 189 (202)
++|-.++++++.-. ..+... -..|+|-|++|.|+.+.. ......+|..+.+.. +|.+|+.++.|++++++
T Consensus 69 ~~v~~and~~s~f~-----p~f~~~--~~k~vIgvVTK~DLaed~--dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~ 139 (148)
T COG4917 69 IYVHAANDPESRFP-----PGFLDI--GVKKVIGVVTKADLAEDA--DISLVKRWLREAGAEPIFETSAVDNQGVEELVD 139 (148)
T ss_pred eeeecccCccccCC-----cccccc--cccceEEEEecccccchH--hHHHHHHHHHHcCCcceEEEeccCcccHHHHHH
Confidence 99999999854211 011111 134589999999998633 344566666666654 89999999999999999
Q ss_pred HHHH
Q 028884 190 EIAK 193 (202)
Q Consensus 190 ~l~~ 193 (202)
+|..
T Consensus 140 ~L~~ 143 (148)
T COG4917 140 YLAS 143 (148)
T ss_pred HHHh
Confidence 9865
No 292
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.40 E-value=5.9e-12 Score=92.30 Aligned_cols=153 Identities=18% Similarity=0.176 Sum_probs=86.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC------------CCccccceeEEEEEEEecCCc------------------
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP------------TSKVTVGASFLSQTIALQDST------------------ 81 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~------------------ 81 (202)
....|.|+|..|+|||||+++++...... ..+...-.......+...++.
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~~~~~~~~~l~~gcic~~~~~~~~~~l~~~~~ 100 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLRKYGAPAIQINTGKECHLDAHMVAHALEDLPL 100 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHHHcCCcEEEEcCCCcccCChHHHHHHHHHhcc
Confidence 46888999999999999999997641100 000000000000011111111
Q ss_pred -EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChH
Q 028884 82 -TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ 160 (202)
Q Consensus 82 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 160 (202)
...+.++|+.|.-.... .+....+..+.++|..+.+... ..... ....|.++++||+|+.........
T Consensus 101 ~~~d~IiIEt~G~l~~~~---~~~~~~~~~i~Vvd~~~~d~~~--~~~~~------~~~~a~iiv~NK~Dl~~~~~~~~~ 169 (207)
T TIGR00073 101 DDIDLLFIENVGNLVCPA---DFDLGEHMRVVLLSVTEGDDKP--LKYPG------MFKEADLIVINKADLAEAVGFDVE 169 (207)
T ss_pred CCCCEEEEecCCCcCCCc---ccccccCeEEEEEecCcccchh--hhhHh------HHhhCCEEEEEHHHccccchhhHH
Confidence 14677888888211111 1112345667788887653211 11111 123567999999998754332233
Q ss_pred HHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 161 DGIEYAEKN--GMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 161 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
......+.. ..+++++|++++.|+.++++++.+..
T Consensus 170 ~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~~ 206 (207)
T TIGR00073 170 KMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQV 206 (207)
T ss_pred HHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 344434333 47899999999999999999998764
No 293
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.39 E-value=3.2e-11 Score=94.59 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=92.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC----CCC------------CCCccc---cceeE-----EEEEEEecCCcEEEEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG----QFD------------PTSKVT---VGASF-----LSQTIALQDSTTVKFEIW 88 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~----~~~------------~~~~~~---~~~~~-----~~~~~~~~~~~~~~~~i~ 88 (202)
.+.|.|+|+.++|||||||+|.+. ... +...+. .+++. ....+...++-...+.++
T Consensus 17 ~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 17 DIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred cEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 589999999999999999999987 222 111111 11111 112233334444789999
Q ss_pred eCCChhhhh-----------------------------hccccccc-CccEEEEEE-eCC----ChhHH-HHHHHHHHHH
Q 028884 89 DTAGQERYA-----------------------------ALAPLYYR-GAAVAVVVY-DIT----SPDSF-NKAQYWVKEL 132 (202)
Q Consensus 89 D~~G~~~~~-----------------------------~~~~~~~~-~~d~~i~v~-d~~----~~~s~-~~~~~~~~~i 132 (202)
||+|...-. .-++..+. .+|+.|+|. |.+ .++.+ +.-..++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999932110 00233344 789999988 875 11112 2335566666
Q ss_pred HHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC--CCCHHHHHHHHH
Q 028884 133 QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT--ADNINQLFEEIA 192 (202)
Q Consensus 133 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~l~ 192 (202)
+.. ++|+++|+|+.|..... ..+....+..+++.+++.+|+.. ..++..+++.++
T Consensus 177 k~~---~kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL 233 (492)
T TIGR02836 177 KEL---NKPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVL 233 (492)
T ss_pred Hhc---CCCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHH
Confidence 654 79999999999933221 23334455566788877777544 344555555444
No 294
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.39 E-value=3.2e-12 Score=99.91 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=80.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCC-CCCCccccce--eEEEEEEEecCCcEEEEEEEeCCChhhhh-----hccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGA--SFLSQTIALQDSTTVKFEIWDTAGQERYA-----ALAPLY 103 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~ 103 (202)
..++|+|+|.+|+|||||||.|.+-.- ++...++... ......+..++.. .+.+||.||..... .+...-
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~p--nv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFP--NVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-T--TEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCC--CCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 468999999999999999999976322 1222222221 2222233333333 69999999943211 111223
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC-------CCCCCCChH----HHHHHHHH----
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL-------HEKREVPAQ----DGIEYAEK---- 168 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~-------~~~~~~~~~----~~~~~~~~---- 168 (202)
+...|.+|++.+..=.. .-......++++ ++|+++|-+|.|. ..+.....+ ++++.|.+
T Consensus 112 ~~~yD~fiii~s~rf~~---ndv~La~~i~~~---gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 112 FYRYDFFIIISSERFTE---NDVQLAKEIQRM---GKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp GGG-SEEEEEESSS--H---HHHHHHHHHHHT---T-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred ccccCEEEEEeCCCCch---hhHHHHHHHHHc---CCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 55679888876643321 112222345554 6889999999995 112223322 33333332
Q ss_pred c---CCeEEEeccCCC--CCHHHHHHHHHHHcCCC
Q 028884 169 N---GMFFIETSAKTA--DNINQLFEEIAKRLPRP 198 (202)
Q Consensus 169 ~---~~~~~~~s~~~~--~~i~~~~~~l~~~i~~~ 198 (202)
. ..++|.+|+.+- .++..+.+.|...+...
T Consensus 186 ~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~ 220 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAH 220 (376)
T ss_dssp TT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GG
T ss_pred cCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHH
Confidence 1 235888887665 56888888888777654
No 295
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.39 E-value=9.5e-12 Score=92.28 Aligned_cols=141 Identities=14% Similarity=0.138 Sum_probs=82.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
....+...|+|+|.+|+|||||++.+.+...........+. . .+.... ...+.++|+||.. ..+ ....+.+
T Consensus 34 ~~~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~-i---~i~~~~--~~~i~~vDtPg~~--~~~-l~~ak~a 104 (225)
T cd01882 34 PEEPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGP-I---TVVTGK--KRRLTFIECPNDI--NAM-IDIAKVA 104 (225)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcccCcccccccc-E---EEEecC--CceEEEEeCCchH--HHH-HHHHHhc
Confidence 33456788999999999999999999874211111111111 1 111112 2578999999864 222 2235779
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeE-EEEEeCCCCCCCCCCC---hHHHHH-HHH--HcCCeEEEeccCC
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKADLHEKREVP---AQDGIE-YAE--KNGMFFIETSAKT 180 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D~~~~~~~~---~~~~~~-~~~--~~~~~~~~~s~~~ 180 (202)
|++++++|++.+..... ...+..+... +.|. ++|+||+|+.+..... ..+... +.. ..+.+++.+||++
T Consensus 105 DvVllviDa~~~~~~~~-~~i~~~l~~~---g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iSa~~ 180 (225)
T cd01882 105 DLVLLLIDASFGFEMET-FEFLNILQVH---GFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLSGIV 180 (225)
T ss_pred CEEEEEEecCcCCCHHH-HHHHHHHHHc---CCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEeecc
Confidence 99999999986533222 2333444333 4664 4599999986432111 111211 221 1346799999888
Q ss_pred C
Q 028884 181 A 181 (202)
Q Consensus 181 ~ 181 (202)
.
T Consensus 181 ~ 181 (225)
T cd01882 181 H 181 (225)
T ss_pred C
Confidence 7
No 296
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.38 E-value=1.9e-11 Score=95.80 Aligned_cols=116 Identities=14% Similarity=0.228 Sum_probs=81.7
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCh----------hHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP----------DSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~ 151 (202)
..+.+||.+|+...+..|..++.+++++|+|+|+++. ..+.+....++.+... .-.++|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 4678999999999999999999999999999999973 2344444444444332 3357999999999997
Q ss_pred CCCC---------------CCChHHHHHHHHH-----c------CCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 152 HEKR---------------EVPAQDGIEYAEK-----N------GMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 152 ~~~~---------------~~~~~~~~~~~~~-----~------~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
..+. ......+..+... . .+-++.++|.+..++..+|+.+.+.|..+
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 4310 1122333333322 1 13356788999999999999988877643
No 297
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.38 E-value=4.3e-12 Score=89.93 Aligned_cols=111 Identities=17% Similarity=0.176 Sum_probs=70.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCC-----------------------------------
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS----------------------------------- 80 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------- 80 (202)
|+|+|..++|||||||.|++....+......+.............
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 789999999999999999997754433322222111111110000
Q ss_pred ------------------cEEEEEEEeCCChhh----hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCC
Q 028884 81 ------------------TTVKFEIWDTAGQER----YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSP 138 (202)
Q Consensus 81 ------------------~~~~~~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~ 138 (202)
....+.|+|+||... ....+..+++.+|++|+|.+++...+-.....+.+.....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~--- 157 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD--- 157 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT---
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC---
Confidence 002478999999643 3356777889999999999999975555555554444433
Q ss_pred CCeEEEEEeCC
Q 028884 139 DIVMALVGNKA 149 (202)
Q Consensus 139 ~~p~ivv~nK~ 149 (202)
...+++|.||.
T Consensus 158 ~~~~i~V~nk~ 168 (168)
T PF00350_consen 158 KSRTIFVLNKA 168 (168)
T ss_dssp CSSEEEEEE-G
T ss_pred CCeEEEEEcCC
Confidence 33489999984
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.37 E-value=1.9e-11 Score=94.86 Aligned_cols=103 Identities=14% Similarity=0.078 Sum_probs=66.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--ChH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQ 160 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~ 160 (202)
+.+.|+||+|...-... ....+|.++++.+...++....+.. .+.. ..-++|+||+|+...... ...
T Consensus 149 ~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~k~---gi~E-----~aDIiVVNKaDl~~~~~a~~~~~ 217 (332)
T PRK09435 149 YDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGIKK---GIME-----LADLIVINKADGDNKTAARRAAA 217 (332)
T ss_pred CCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHHHh---hhhh-----hhheEEeehhcccchhHHHHHHH
Confidence 67899999997632222 3566999999987555544443332 1211 123899999998754321 111
Q ss_pred HHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 161 DGIEYAEK-------NGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 161 ~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+....... +..+++.+|++++.|++++++.|.+++.
T Consensus 218 el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 218 EYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 22222211 2257999999999999999999998764
No 299
>PTZ00416 elongation factor 2; Provisional
Probab=99.37 E-value=3.8e-12 Score=110.21 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=78.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCC--CCC--------------CccccceeEEEEEEEec-------CCcEEEEEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF--DPT--------------SKVTVGASFLSQTIALQ-------DSTTVKFEI 87 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~--------------~~~~~~~~~~~~~~~~~-------~~~~~~~~i 87 (202)
+...+|+|+|+.++|||||+++|+...- ... ....++.......+.+. ++....+.+
T Consensus 17 ~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 17 DQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred cCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 4466999999999999999999987321 000 00011111111112221 122367999
Q ss_pred EeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 88 WDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 88 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
+||||+..|.......++.+|++|+|+|+..+-.... ...+..+.. .++|+++++||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t-~~~~~~~~~---~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQT-ETVLRQALQ---ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccH-HHHHHHHHH---cCCCEEEEEEChhhh
Confidence 9999999988777888999999999999998643332 223333333 358899999999986
No 300
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.36 E-value=1.9e-11 Score=82.06 Aligned_cols=114 Identities=33% Similarity=0.472 Sum_probs=80.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
++|+++|..|+|||+|+.++....+...+. ++.. +......+.+.++.+++
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------~~~~~~~~~~s~~~~~~ 52 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------IDVYDPTSYESFDVVLQ 52 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------hhhccccccCCCCEEEE
Confidence 489999999999999999997766643222 2211 23334556777899999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 185 (202)
||+.....++..+ |+..+......+.|.++++||.|+.+.......... .++++|++++.|+.
T Consensus 53 v~~~~~~~s~~~~--~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~~~~~~~--------~~~~~s~~~~~~~~ 115 (124)
T smart00010 53 CWRVDDRDSADNK--NVPEVLVGNKSDLPILVGGNRDVLEEERQVATEEGL--------EFAETSAKTPEEGE 115 (124)
T ss_pred EEEccCHHHHHHH--hHHHHHhcCCCCCcEEEEeechhhHhhCcCCHHHHH--------HHHHHhCCCcchhh
Confidence 9999999888765 777666555567889999999997443333322222 35577888888874
No 301
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.6e-12 Score=104.98 Aligned_cols=168 Identities=17% Similarity=0.131 Sum_probs=108.4
Q ss_pred CCCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEec----------C-----CcEEEEEEE
Q 028884 24 AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQ----------D-----STTVKFEIW 88 (202)
Q Consensus 24 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~i~ 88 (202)
++.+..+-+..-|||+|+..+|||-|+..+.+..+......+++..+....+... . -..--+.++
T Consensus 466 ~~~~~~~lRSPIcCilGHVDTGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvI 545 (1064)
T KOG1144|consen 466 ANESTENLRSPICCILGHVDTGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVI 545 (1064)
T ss_pred ccccchhcCCceEEEeecccccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEe
Confidence 3344555667789999999999999999998854433333222222222211111 0 011247899
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC------------
Q 028884 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE------------ 156 (202)
Q Consensus 89 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~------------ 156 (202)
||||++.|..+.......||.+|+|+|+..+-..+.+.. +..++ .++.|+||++||+|..-.+.
T Consensus 546 dtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiES-i~lLR---~rktpFivALNKiDRLYgwk~~p~~~i~~~lk 621 (1064)
T KOG1144|consen 546 DTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIES-INLLR---MRKTPFIVALNKIDRLYGWKSCPNAPIVEALK 621 (1064)
T ss_pred cCCCchhhhhhhhccccccceEEEEeehhccCCcchhHH-HHHHH---hcCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence 999999999999999999999999999987633333322 23344 34799999999999743210
Q ss_pred -----CChHH-------HHHHHHH-c-------------CCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 157 -----VPAQD-------GIEYAEK-N-------------GMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 157 -----~~~~~-------~~~~~~~-~-------------~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
+..+. +.+|+.+ + -+.++++||..|+|+.+++-+|++.-
T Consensus 622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 00000 0111110 0 12478899999999999999988753
No 302
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=2.5e-11 Score=92.46 Aligned_cols=165 Identities=15% Similarity=0.139 Sum_probs=101.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCC-------CCCccccceeEEEEE------EEecCCcEEEEEEEeCCChhhhhh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFD-------PTSKVTVGASFLSQT------IALQDSTTVKFEIWDTAGQERYAA 98 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~-------~~~~~~~~~~~~~~~------~~~~~~~~~~~~i~D~~G~~~~~~ 98 (202)
..+++.++|+..+|||||.++|..-... ......++.+..-.. ...+.+....+.++|+||+...-.
T Consensus 6 ~n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIR 85 (522)
T KOG0461|consen 6 SNLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIR 85 (522)
T ss_pred ceeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHH
Confidence 3599999999999999999999763211 111112222221111 122345557899999999976544
Q ss_pred cccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC-CCChHH--HHHHHHHc------
Q 028884 99 LAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR-EVPAQD--GIEYAEKN------ 169 (202)
Q Consensus 99 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~-~~~~~~--~~~~~~~~------ 169 (202)
.......-.|..++|+|+..+..-+..+-. -.-...+ ...+||+||.|...+. ..+..+ .....+.+
T Consensus 86 tiiggaqiiDlm~lviDv~kG~QtQtAEcL-iig~~~c---~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~ 161 (522)
T KOG0461|consen 86 TIIGGAQIIDLMILVIDVQKGKQTQTAECL-IIGELLC---KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFD 161 (522)
T ss_pred HHHhhhheeeeeeEEEehhcccccccchhh-hhhhhhc---cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcC
Confidence 444445556999999999876322222211 1111122 2378888988865442 222111 12222221
Q ss_pred -CCeEEEeccCCC----CCHHHHHHHHHHHcCCCCC
Q 028884 170 -GMFFIETSAKTA----DNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 170 -~~~~~~~s~~~~----~~i~~~~~~l~~~i~~~~~ 200 (202)
+.+++++|+.+| .++.++.+.|.+++.+++.
T Consensus 162 g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~R 197 (522)
T KOG0461|consen 162 GNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKR 197 (522)
T ss_pred CCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCc
Confidence 368999999999 8899999999998887754
No 303
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=99.30 E-value=7.2e-13 Score=98.70 Aligned_cols=112 Identities=21% Similarity=0.129 Sum_probs=58.7
Q ss_pred EEEEEeCCChhhhhhcccccc--------cCccEEEEEEeCCChhHH-HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 84 KFEIWDTAGQERYAALAPLYY--------RGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 84 ~~~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
.+.++||||+.++...+.... ...-++++++|.....+. ..+..++..+..+...+.|.+.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 689999999887654443332 345688889998743221 22233333332222347999999999998762
Q ss_pred CC------------C-------ChHHHHHHHHHc----CC-eEEEeccCCCCCHHHHHHHHHHHc
Q 028884 155 RE------------V-------PAQDGIEYAEKN----GM-FFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 155 ~~------------~-------~~~~~~~~~~~~----~~-~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
.. . .......++... .. +++.+|+.+++++.+++..+-+.+
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 20 0 001111122211 23 699999999999999999876653
No 304
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.28 E-value=1.6e-10 Score=90.40 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=55.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhh----
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQER---- 95 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~---- 95 (202)
++|.++|.|++|||||+|+|++........+..+.+.....+.+.+.. ...+.++|+||...
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~ 82 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 82 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCCh
Confidence 789999999999999999999977433333333333333333333211 13589999999432
Q ss_pred ---hhhcccccccCccEEEEEEeCC
Q 028884 96 ---YAALAPLYYRGAAVAVVVYDIT 117 (202)
Q Consensus 96 ---~~~~~~~~~~~~d~~i~v~d~~ 117 (202)
........++.+|++++|+|..
T Consensus 83 g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 83 GEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 1112333467899999999984
No 305
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.27 E-value=1.1e-10 Score=96.51 Aligned_cols=125 Identities=16% Similarity=0.165 Sum_probs=73.4
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-------
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------- 97 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------- 97 (202)
..++.+..++|+|+|.+|+||||++|++++......... ..++......... ++ ..+.++||||.....
T Consensus 111 g~~~LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~i-dG--~~L~VIDTPGL~dt~~dq~~ne 187 (763)
T TIGR00993 111 GQDPLDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLV-QG--VKIRVIDTPGLKSSASDQSKNE 187 (763)
T ss_pred hccccCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEE-CC--ceEEEEECCCCCccccchHHHH
Confidence 344556678999999999999999999999764333321 2222221211222 22 579999999955321
Q ss_pred h---ccccccc--CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCC
Q 028884 98 A---LAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHE 153 (202)
Q Consensus 98 ~---~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~ 153 (202)
. ....++. ..|++|+|..++......+-..+++.+......+ ...|||+|+.|..+
T Consensus 188 eILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 188 KILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 1 1111323 4799999988764322112223444443332211 23789999999765
No 306
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.8e-10 Score=93.03 Aligned_cols=154 Identities=19% Similarity=0.200 Sum_probs=99.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCC-------------------------------CCCCccccceeEEEEEEEe
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQF-------------------------------DPTSKVTVGASFLSQTIAL 77 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 77 (202)
+....++++|+|+..+|||||+.+++...- .......++.+.....+
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f-- 250 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF-- 250 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE--
Confidence 345789999999999999999998875310 11111222222222222
Q ss_pred cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh---HHH---HHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFN---KAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 78 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
+.....+.++|+||+..|-.....-...+|++++|+|++... .|+ +.++....++... -..++|++||+|.
T Consensus 251 -es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lg--i~qlivaiNKmD~ 327 (603)
T KOG0458|consen 251 -ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLG--ISQLIVAINKMDL 327 (603)
T ss_pred -ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcC--cceEEEEeecccc
Confidence 233478999999998888766666677799999999998652 222 2344545555554 3348889999998
Q ss_pred CCCCCCChHHH----HHHH-HHc-----CCeEEEeccCCCCCHHHH
Q 028884 152 HEKREVPAQDG----IEYA-EKN-----GMFFIETSAKTADNINQL 187 (202)
Q Consensus 152 ~~~~~~~~~~~----~~~~-~~~-----~~~~~~~s~~~~~~i~~~ 187 (202)
..=.+...+++ ..+. +.. .+.+++||...|.|+...
T Consensus 328 V~Wsq~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 328 VSWSQDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred cCccHHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 75332222222 2222 223 346999999999986543
No 307
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=3.8e-11 Score=86.59 Aligned_cols=160 Identities=19% Similarity=0.281 Sum_probs=99.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-----hhcccccccC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-----AALAPLYYRG 106 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~~~~ 106 (202)
.-||+++|.+|+||||+-.-++.+... .....+.+.+.....+.+-++ ..+.+||++|++.+ .......+++
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGn--l~LnlwDcGgqe~fmen~~~~q~d~iF~n 81 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGN--LVLNLWDCGGQEEFMENYLSSQEDNIFRN 81 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhhh--heeehhccCCcHHHHHHHHhhcchhhhee
Confidence 468999999999999987666543321 222334444444444333222 57899999998843 3455667889
Q ss_pred ccEEEEEEeCCChhHHHHH---HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChH------HHHHHHHHcCCeEEEec
Q 028884 107 AAVAVVVYDITSPDSFNKA---QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ------DGIEYAEKNGMFFIETS 177 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~---~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~------~~~~~~~~~~~~~~~~s 177 (202)
.+++|++||++..+-..++ ++-++.+.+. .|...+...++|.|+......... ....+..-+.+.++.+|
T Consensus 82 V~vli~vFDves~e~~~D~~~yqk~Le~ll~~-SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~~~~f~Ts 160 (295)
T KOG3886|consen 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQN-SPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLECKCFPTS 160 (295)
T ss_pred heeeeeeeeccchhhhhhHHHHHHHHHHHHhc-CCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcccccccccccc
Confidence 9999999999976533333 4444555554 677889999999999765332221 12222223445677777
Q ss_pred cCCCCCHHHHHHHHHHHcC
Q 028884 178 AKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 178 ~~~~~~i~~~~~~l~~~i~ 196 (202)
..+ +.+-.++..++..+.
T Consensus 161 iwD-etl~KAWS~iv~~li 178 (295)
T KOG3886|consen 161 IWD-ETLYKAWSSIVYNLI 178 (295)
T ss_pred hhh-HHHHHHHHHHHHhhC
Confidence 666 444444555544433
No 308
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.24 E-value=1.4e-10 Score=86.28 Aligned_cols=69 Identities=14% Similarity=0.126 Sum_probs=44.9
Q ss_pred EEEEEEeCCChhh-------------hhhcccccccC-ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028884 83 VKFEIWDTAGQER-------------YAALAPLYYRG-AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148 (202)
Q Consensus 83 ~~~~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 148 (202)
..+.++|+||... ...+...|++. .+++++|+|++....-....+....+. ..+.|+++|+||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld---~~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVD---PQGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH---HcCCcEEEEEEC
Confidence 4789999999631 23455667774 468999999876422222223333333 336789999999
Q ss_pred CCCCCC
Q 028884 149 ADLHEK 154 (202)
Q Consensus 149 ~D~~~~ 154 (202)
.|..++
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998653
No 309
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.24 E-value=4.4e-10 Score=85.77 Aligned_cols=140 Identities=17% Similarity=0.222 Sum_probs=71.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC--------ccccceeEEEEEEEe-cCCcEEEEEEEeCCChh--------
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGASFLSQTIAL-QDSTTVKFEIWDTAGQE-------- 94 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~-------- 94 (202)
-.++|+|+|..|+|||||||.|++....... ....+.........+ .++..+.+.++||||..
T Consensus 3 ~~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 3 FNFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 3689999999999999999999986543332 011122222222222 35566899999999911
Q ss_pred ----------hhhhc-------c--cccccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 95 ----------RYAAL-------A--PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 95 ----------~~~~~-------~--~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
.|... . ...=...|++||+++++... .... -..++.+ ...+++|.|+.|+|....
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~D-i~~mk~L----s~~vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLD-IEFMKRL----SKRVNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHH-HHHHHHH----TTTSEEEEEESTGGGS-H
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHH-HHHHHHh----cccccEEeEEecccccCH
Confidence 11100 0 11112468999999987531 1122 2233444 345789999999997543
Q ss_pred CCC--ChHHHHHHHHHcCCeEEEe
Q 028884 155 REV--PAQDGIEYAEKNGMFFIET 176 (202)
Q Consensus 155 ~~~--~~~~~~~~~~~~~~~~~~~ 176 (202)
.+. ....+.......++.++..
T Consensus 158 ~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 158 EELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp HHHHHHHHHHHHHHHHTT--S---
T ss_pred HHHHHHHHHHHHHHHHcCceeecc
Confidence 221 1122333334456665553
No 310
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.23 E-value=7.5e-11 Score=89.11 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=108.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhcccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALAPL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~~~ 102 (202)
...-|.|+|=+++||||||+.|.+-...+...-..+.+.+......+.+. .+.+.||.|.- .|++..+.
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~--~vlltDTvGFisdLP~~LvaAF~ATLee 254 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGN--FVLLTDTVGFISDLPIQLVAAFQATLEE 254 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCc--EEEEeechhhhhhCcHHHHHHHHHHHHH
Confidence 34678999999999999999999766656655556667767777777776 78889999943 24444443
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe----EEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEecc
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV----MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p----~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
+..+|+++-|.|++.|.--++....+..+.....+..| ++=|=||.|..+.....+ ..+ .+.+|+
T Consensus 255 -VaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E--------~n~--~v~isa 323 (410)
T KOG0410|consen 255 -VAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEE--------KNL--DVGISA 323 (410)
T ss_pred -HhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCccc--------cCC--cccccc
Confidence 55699999999999997555666666777766544444 344568888654322211 111 578999
Q ss_pred CCCCCHHHHHHHHHHHcC
Q 028884 179 KTADNINQLFEEIAKRLP 196 (202)
Q Consensus 179 ~~~~~i~~~~~~l~~~i~ 196 (202)
++|.|++++++.+-..+.
T Consensus 324 ltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 324 LTGDGLEELLKAEETKVA 341 (410)
T ss_pred ccCccHHHHHHHHHHHhh
Confidence 999999999988766554
No 311
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.21 E-value=2.2e-09 Score=78.69 Aligned_cols=154 Identities=18% Similarity=0.172 Sum_probs=102.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhccccccc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYR 105 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 105 (202)
..+|+++|-|.+|||||+..+......... ...++-.+.+-+...++ ..+++.|.||.-+ .........+
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~SeaA~-yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavAr 138 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHSEAAS-YEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVAR 138 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchhhhhc-eeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEee
Confidence 479999999999999999999875432222 22333333333322233 4799999999432 1345566778
Q ss_pred CccEEEEEEeCCChhHHH-HHHHHHHHHHHcCCC----------------------------------------------
Q 028884 106 GAAVAVVVYDITSPDSFN-KAQYWVKELQKHGSP---------------------------------------------- 138 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~---------------------------------------------- 138 (202)
.+|.++.|.|++..+... -+.+.++.+--+-++
T Consensus 139 taDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl 218 (364)
T KOG1486|consen 139 TADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVL 218 (364)
T ss_pred cccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEE
Confidence 899999999999875443 334444433111111
Q ss_pred -------------------CCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 139 -------------------DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 139 -------------------~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
-.+|+.|-||+| +++.++...+++..+. +.+|+.-..|++.+++.+++.+.
T Consensus 219 ~ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID-----~vs~eevdrlAr~Pns--vViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486|consen 219 FREDCTVDDFIDVIEGNRVYIKCLYVYNKID-----QVSIEEVDRLARQPNS--VVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred EecCCChHHHHHHHhccceEEEEEEEeeccc-----eecHHHHHHHhcCCCc--EEEEeccccCHHHHHHHHHHHhc
Confidence 256677777777 4556677777766664 56777888899999999998764
No 312
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=1.8e-10 Score=90.19 Aligned_cols=113 Identities=15% Similarity=0.147 Sum_probs=82.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC--C--------------------CCCCCccccceeEEEEEEEecCCcEEEEEEEeC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG--Q--------------------FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT 90 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~--~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~ 90 (202)
.-..+|+-+|.+|||||-++|+-- . .....+..++...+...+.+.+ ..+.+.||
T Consensus 12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~---~~iNLLDT 88 (528)
T COG4108 12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD---CLVNLLDT 88 (528)
T ss_pred hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC---eEEeccCC
Confidence 346789999999999999988631 0 0111223455666666666654 67999999
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 91 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
||++.|..-+..-+..+|.++.|+|+..+-.. +..+.++.-+ .+++|++=++||.|..
T Consensus 89 PGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~-qT~KLfeVcr---lR~iPI~TFiNKlDR~ 146 (528)
T COG4108 89 PGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEP-QTLKLFEVCR---LRDIPIFTFINKLDRE 146 (528)
T ss_pred CCccccchhHHHHHHhhheeeEEEecccCccH-HHHHHHHHHh---hcCCceEEEeeccccc
Confidence 99999988777778889999999999987432 2233434333 4589999999999964
No 313
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=1.4e-10 Score=97.67 Aligned_cols=119 Identities=15% Similarity=0.100 Sum_probs=84.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCC--------C------CC----CccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF--------D------PT----SKVTVGASFLSQTIALQDSTTVKFEIWDTA 91 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~--------~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 91 (202)
..+.-+|.++|+..+|||||.++++...- . .. ....++.........+.+ .+.+.++|||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~--~~~iNlIDTP 84 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKG--DYRINLIDTP 84 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC--ceEEEEeCCC
Confidence 45678999999999999999999986311 0 00 111223333233333332 3789999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
|+..|.......++.+|++++|+|+..+-..+.-.-|.. ....++|.++++||+|....
T Consensus 85 GHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rq----a~~~~vp~i~fiNKmDR~~a 143 (697)
T COG0480 85 GHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQ----ADKYGVPRILFVNKMDRLGA 143 (697)
T ss_pred CccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHH----HhhcCCCeEEEEECcccccc
Confidence 999999999999999999999999998744433333422 23447999999999997654
No 314
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=99.20 E-value=3.7e-11 Score=84.80 Aligned_cols=151 Identities=16% Similarity=0.145 Sum_probs=89.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEE---------------EEEEecCCc----------------
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS---------------QTIALQDST---------------- 81 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~---------------- 81 (202)
.++|.|.|++|||||+|+.+++.........--++.+... ..+...++.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 5899999999999999999887642211100000001100 001111000
Q ss_pred ---EEEEEEEeCCChhhhhhcccccccCcc-EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC
Q 028884 82 ---TVKFEIWDTAGQERYAALAPLYYRGAA-VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (202)
Q Consensus 82 ---~~~~~i~D~~G~~~~~~~~~~~~~~~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~ 157 (202)
...+.|++..|+ ...... ..-.| .-|+|+|...++-.. ++-+..+. ..=++|+||.|+......
T Consensus 93 ~~~~~Dll~iEs~GN--L~~~~s--p~L~d~~~v~VidvteGe~~P--~K~gP~i~------~aDllVInK~DLa~~v~~ 160 (202)
T COG0378 93 DFPDLDLLFIESVGN--LVCPFS--PDLGDHLRVVVIDVTEGEDIP--RKGGPGIF------KADLLVINKTDLAPYVGA 160 (202)
T ss_pred cCCcCCEEEEecCcc--eecccC--cchhhceEEEEEECCCCCCCc--ccCCCcee------EeeEEEEehHHhHHHhCc
Confidence 135677777772 111111 22234 788999998763211 11011111 125888999999887666
Q ss_pred ChHHHHHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 158 PAQDGIEYAEK--NGMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 158 ~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
..+...+-+++ ...+++++|.++|+|++++++++....
T Consensus 161 dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 161 DLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred cHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence 55666555554 467899999999999999999988764
No 315
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.20 E-value=3.4e-10 Score=85.80 Aligned_cols=82 Identities=15% Similarity=0.102 Sum_probs=53.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhh------
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQER------ 95 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~------ 95 (202)
|.++|.|++|||||+|+|++........+..+.+.....+.+.+.. ...+.++|+||...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~ 80 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGE 80 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhh
Confidence 5799999999999999999977643333333334433334433321 13589999999432
Q ss_pred -hhhcccccccCccEEEEEEeCC
Q 028884 96 -YAALAPLYYRGAAVAVVVYDIT 117 (202)
Q Consensus 96 -~~~~~~~~~~~~d~~i~v~d~~ 117 (202)
........++.+|++++|+|..
T Consensus 81 glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 81 GLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHHHHHHHHhCCEEEEEEeCc
Confidence 1112233467799999999874
No 316
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.20 E-value=2.1e-10 Score=88.66 Aligned_cols=102 Identities=24% Similarity=0.083 Sum_probs=63.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 162 (202)
+.+.|+||+|..... ......+|.++++.+....+ ++......+ .++|.++|+||+|+...........
T Consensus 127 ~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~~~~---el~~~~~~l-----~~~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 127 YDVIIVETVGVGQSE---VDIANMADTFVVVTIPGTGD---DLQGIKAGL-----MEIADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCEEEEeCCCCchhh---hHHHHhhceEEEEecCCccH---HHHHHHHHH-----hhhccEEEEEcccccchhHHHHHHH
Confidence 688999999954222 12456678888886544433 333332323 2466799999999865432110000
Q ss_pred ------HHHHH---HcCCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 163 ------IEYAE---KNGMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 163 ------~~~~~---~~~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
..+.. .+..+++.+|++++.|+++++++|.+.+
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~ 237 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHK 237 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence 11111 1224589999999999999999998864
No 317
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.4e-11 Score=92.30 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=112.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCC---CCCCCccccceeEEEEEEEec--C-----------------------
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQ---FDPTSKVTVGASFLSQTIALQ--D----------------------- 79 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~---~~~~~~~~~~~~~~~~~~~~~--~----------------------- 79 (202)
.+++..++|.-+|+...||||+++.+.+-. |.......++....+.+.++. +
T Consensus 33 isRQATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c 112 (466)
T KOG0466|consen 33 ISRQATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPC 112 (466)
T ss_pred hhheeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCc
Confidence 456778999999999999999998887631 111111112221111111110 0
Q ss_pred ----Cc-----EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028884 80 ----ST-----TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150 (202)
Q Consensus 80 ----~~-----~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 150 (202)
.. ...+.|+|+||++-.-+....-..-.|++++++..+.+-...+..+.+..+..+. -+.++++.||.|
T Consensus 113 ~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--LkhiiilQNKiD 190 (466)
T KOG0466|consen 113 DRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LKHIIILQNKID 190 (466)
T ss_pred ccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hceEEEEechhh
Confidence 00 1467899999998766555444555699999999986543445555555555442 234889999999
Q ss_pred CCCCCCC--ChHHHHHHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 151 LHEKREV--PAQDGIEYAEK---NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 151 ~~~~~~~--~~~~~~~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
+.++.+. ..++++.|.+. .+.+++++||.-++|++-+.++|+..+..+.
T Consensus 191 li~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 191 LIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred hhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 9875432 23344445443 3678999999999999999999999998763
No 318
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=4.2e-10 Score=84.13 Aligned_cols=166 Identities=16% Similarity=0.218 Sum_probs=105.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC----------CC----CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ----------FD----PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 96 (202)
.+.+||..+|+...|||||...+..-. +. .......+..+....+.+.-.. ..+..+|+||+..|
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~-rhyahVDcPGHaDY 88 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN-RHYAHVDCPGHADY 88 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCC-ceEEeccCCChHHH
Confidence 568999999999999999987765421 11 1111222333333333333233 67899999999998
Q ss_pred hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCC---CChHHHHHHHHHcCC-
Q 028884 97 AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKRE---VPAQDGIEYAEKNGM- 171 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~~- 171 (202)
-.....-....|+.|+|+++.+..- .+.++.+...++. +.| +++++||+|+.+..+ .-..+.+.+..+++.
T Consensus 89 vKNMItgAaqmDgAILVVsA~dGpm-PqTrEHiLlarqv---Gvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~ 164 (394)
T COG0050 89 VKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQV---GVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFP 164 (394)
T ss_pred HHHHhhhHHhcCccEEEEEcCCCCC-Ccchhhhhhhhhc---CCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCC
Confidence 7766666667899999999998642 3334444444444 454 667789999987433 223445566666654
Q ss_pred ----eEEEeccCCC--------CCHHHHHHHHHHHcCCCCCC
Q 028884 172 ----FFIETSAKTA--------DNINQLFEEIAKRLPRPSPS 201 (202)
Q Consensus 172 ----~~~~~s~~~~--------~~i~~~~~~l~~~i~~~~~~ 201 (202)
|++.-|+..- ..+.++++++-+.+..+..+
T Consensus 165 gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 165 GDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred CCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 3555453322 24788888888888877543
No 319
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.14 E-value=8.1e-10 Score=86.80 Aligned_cols=155 Identities=19% Similarity=0.108 Sum_probs=105.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCC---CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
.|...|+-..|||||+..+.+.... .......+.+.........+ ..+.|+|.||++++-......+...|.++
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d---~~~~fIDvpgh~~~i~~miag~~~~d~al 78 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED---GVMGFIDVPGHPDFISNLLAGLGGIDYAL 78 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC---CceEEeeCCCcHHHHHHHHhhhcCCceEE
Confidence 4778899999999999999986533 22233344444444443333 47999999999988777777788899999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH---HcCCeEEEeccCCCCCHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE---KNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~~i~~~~ 188 (202)
+|+|.+++-.. +..+.+..+.... ....++|+||+|..++... .+...+... ....+++.+|+++|+|+.++.
T Consensus 79 LvV~~deGl~~-qtgEhL~iLdllg--i~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk 154 (447)
T COG3276 79 LVVAADEGLMA-QTGEHLLILDLLG--IKNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTSAKTGRGIEELK 154 (447)
T ss_pred EEEeCccCcch-hhHHHHHHHHhcC--CCceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccccccCCCHHHHH
Confidence 99999876322 2233334444332 1226899999998764321 222222222 234568999999999999999
Q ss_pred HHHHHHcC
Q 028884 189 EEIAKRLP 196 (202)
Q Consensus 189 ~~l~~~i~ 196 (202)
+.|.+...
T Consensus 155 ~~l~~L~~ 162 (447)
T COG3276 155 NELIDLLE 162 (447)
T ss_pred HHHHHhhh
Confidence 99998874
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.11 E-value=1.1e-09 Score=82.23 Aligned_cols=155 Identities=20% Similarity=0.193 Sum_probs=93.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC-----------CCCCCccccce---------------eEEEEEEEec------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ-----------FDPTSKVTVGA---------------SFLSQTIALQ------ 78 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~-----------~~~~~~~~~~~---------------~~~~~~~~~~------ 78 (202)
.+...|.|.|.||+|||||+..|.... .++....+.+. ..+.......
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGl 128 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGL 128 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhh
Confidence 456789999999999999999886531 12222211110 0001110000
Q ss_pred -----------CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEe
Q 028884 79 -----------DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGN 147 (202)
Q Consensus 79 -----------~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~n 147 (202)
+...+.+.|++|.|--.-. ....+.+|.+++|.-..-++..+.++.-+..+- =++|+|
T Consensus 129 S~at~~~i~~ldAaG~DvIIVETVGvGQse---v~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia--------Di~vIN 197 (323)
T COG1703 129 SRATREAIKLLDAAGYDVIIVETVGVGQSE---VDIANMADTFLVVMIPGAGDDLQGIKAGIMEIA--------DIIVIN 197 (323)
T ss_pred hHHHHHHHHHHHhcCCCEEEEEecCCCcch---hHHhhhcceEEEEecCCCCcHHHHHHhhhhhhh--------heeeEe
Confidence 0002578999999853222 223455899999988877776776665444442 378899
Q ss_pred CCCCCCCCC--CChHHHHHHHH------HcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 148 KADLHEKRE--VPAQDGIEYAE------KNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 148 K~D~~~~~~--~~~~~~~~~~~------~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
|.|...... .....+..+.. .+..+++.+|+.+|+|++++++.+.++..
T Consensus 198 KaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 198 KADRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred ccChhhHHHHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 999433211 11111111111 13457999999999999999999988754
No 321
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.05 E-value=1e-10 Score=86.48 Aligned_cols=152 Identities=22% Similarity=0.187 Sum_probs=84.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCC-----------CCCCccc---------------cceeEEEEEEEecCCc----
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQF-----------DPTSKVT---------------VGASFLSQTIALQDST---- 81 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~---------------~~~~~~~~~~~~~~~~---- 81 (202)
+.+.|.|.|+||+|||||++.|..... ++....+ .....+.......+.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 468999999999999999998865211 1111110 0111112221111100
Q ss_pred -------------EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028884 82 -------------TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNK 148 (202)
Q Consensus 82 -------------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 148 (202)
.+.+.|++|.|--.-. ......+|.+++|.-+.-.+..+.++.-+.++. =++|+||
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEia--------Di~vVNK 176 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEIA--------DIFVVNK 176 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH---------SEEEEE-
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhhc--------cEEEEeC
Confidence 1678999998742222 112455899999999887766665544333332 3788999
Q ss_pred CCCCCCCCCChHHHHHHHHH-------cCCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 149 ADLHEKREVPAQDGIEYAEK-------NGMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 149 ~D~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
.|...... ...+....... +..+++.+||.++.|++++++.|.++.
T Consensus 177 aD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 177 ADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHR 229 (266)
T ss_dssp -SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred CChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 99432211 11111111111 235799999999999999999988753
No 322
>PRK12289 GTPase RsgA; Reviewed
Probab=99.05 E-value=1.8e-09 Score=84.82 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=69.3
Q ss_pred hhcccccccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEE
Q 028884 97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE 175 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (202)
..+.+..+.++|.+++|+|+.++. ....+..|+..+. ..++|+++|+||+|+..... ...........+..++.
T Consensus 80 ~~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~---~~~ip~ILVlNK~DLv~~~~--~~~~~~~~~~~g~~v~~ 154 (352)
T PRK12289 80 TELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAE---STGLEIVLCLNKADLVSPTE--QQQWQDRLQQWGYQPLF 154 (352)
T ss_pred cceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHH---HCCCCEEEEEEchhcCChHH--HHHHHHHHHhcCCeEEE
Confidence 445566788999999999998774 4556677776553 34789999999999864322 12233344567888999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028884 176 TSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~ 194 (202)
+|++++.|++++++.|...
T Consensus 155 iSA~tg~GI~eL~~~L~~k 173 (352)
T PRK12289 155 ISVETGIGLEALLEQLRNK 173 (352)
T ss_pred EEcCCCCCHHHHhhhhccc
Confidence 9999999999999988653
No 323
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=99.04 E-value=3.8e-09 Score=80.22 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=40.5
Q ss_pred CeEEEEEeCCCCCCCCCCChHHHHHHHHH--cCCeEEEeccCCCCCHHHHHHHHHHH
Q 028884 140 IVMALVGNKADLHEKREVPAQDGIEYAEK--NGMFFIETSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 140 ~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~i~~~~~~l~~~ 194 (202)
.+-++|+||+|+.+......+...+..+. ...+++.+|+++|+|++++++||.+.
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 44689999999975433333344444433 35779999999999999999999874
No 324
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=3e-09 Score=76.96 Aligned_cols=96 Identities=24% Similarity=0.170 Sum_probs=66.5
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-----HH
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EK 168 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~ 168 (202)
..+..++..+++.+|++++|+|++++.. .|...+... ..++|+++|+||+|+..... .......+. ..
T Consensus 22 ~~~~~~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~-~~~~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~ 94 (190)
T cd01855 22 DFILNLLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLF-GGNNPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAG 94 (190)
T ss_pred HHHHHHHHhcccCCcEEEEEEECccCCC-----ccchhHHHh-cCCCcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhh
Confidence 3357788889999999999999987631 111222222 24689999999999865322 222233332 22
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 169 NGM---FFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 169 ~~~---~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
.+. .++.+|++++.|++++++.|.+.+.
T Consensus 95 ~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred cCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 332 5899999999999999999998764
No 325
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.01 E-value=6.5e-10 Score=77.87 Aligned_cols=96 Identities=20% Similarity=0.142 Sum_probs=65.5
Q ss_pred hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEE
Q 028884 96 YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE 175 (202)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (202)
++.++++.++.+|++|+|+|++++..... ..+...+. ..++|+++|+||+|+.+... ......+....+.+++.
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~---~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~ 75 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRS-RKLERYVL---ELGKKLLIVLNKADLVPKEV--LEKWKSIKESEGIPVVY 75 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHH---hCCCcEEEEEEhHHhCCHHH--HHHHHHHHHhCCCcEEE
Confidence 35567778888999999999987643221 12222222 23689999999999854221 11111233345667899
Q ss_pred eccCCCCCHHHHHHHHHHHcCC
Q 028884 176 TSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
+|++++.|++++++.+.+.+..
T Consensus 76 iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 76 VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EEccccccHHHHHHHHHHHHhh
Confidence 9999999999999999887653
No 326
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.00 E-value=2.6e-09 Score=87.70 Aligned_cols=117 Identities=18% Similarity=0.169 Sum_probs=81.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-----------------cccceeEEEEEE--EecCCcEEEEEEEeCC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-----------------VTVGASFLSQTI--ALQDSTTVKFEIWDTA 91 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~~i~D~~ 91 (202)
....++.++|+-++|||+|+.-|..+..+.... ...+.......+ ...++..+.+++.|||
T Consensus 126 ~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 126 ERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred ceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 357899999999999999999887653211110 111111111122 2234556889999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
|+..|.......++.+|++++++|+..+-.+..-+-....+ ....|+++|+||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhai----q~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAI----QNRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHH----hccCcEEEEEehhHH
Confidence 99999888888899999999999999886554322222223 346889999999996
No 327
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=2e-08 Score=78.01 Aligned_cols=148 Identities=17% Similarity=0.237 Sum_probs=86.3
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-------ccccceeEEEEEEEe-cCCcEEEEEEEeCCChh-----
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------KVTVGASFLSQTIAL-QDSTTVKFEIWDTAGQE----- 94 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~i~D~~G~~----- 94 (202)
.++.-.++++++|..|.|||||||.|+...+.... .+..+..+......+ .++-.+++.++||||..
T Consensus 16 ~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdn 95 (366)
T KOG2655|consen 16 VKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDN 95 (366)
T ss_pred HhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccc
Confidence 44456799999999999999999999987543321 111122333333333 34566899999999911
Q ss_pred ----------------hh----hhccccccc--CccEEEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 95 ----------------RY----AALAPLYYR--GAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 95 ----------------~~----~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
.| ....+..+. .+++.+|.+..+.-. +..+ ..++..+ ...+.+|.|+.|.|.
T Consensus 96 s~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghg-L~p~Di~~Mk~l----~~~vNiIPVI~KaD~ 170 (366)
T KOG2655|consen 96 SNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHG-LKPLDIEFMKKL----SKKVNLIPVIAKADT 170 (366)
T ss_pred cccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCC-CcHhhHHHHHHH----hccccccceeecccc
Confidence 11 111222233 467888888866431 2222 2233333 335668999999997
Q ss_pred CCCCC--CChHHHHHHHHHcCCeEEEeccCC
Q 028884 152 HEKRE--VPAQDGIEYAEKNGMFFIETSAKT 180 (202)
Q Consensus 152 ~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~ 180 (202)
....+ .....+.+.+...++++|......
T Consensus 171 lT~~El~~~K~~I~~~i~~~nI~vf~fp~~~ 201 (366)
T KOG2655|consen 171 LTKDELNQFKKRIRQDIEEHNIKVFDFPTDE 201 (366)
T ss_pred CCHHHHHHHHHHHHHHHHHcCcceecCCCCc
Confidence 65432 122334455556677766655444
No 328
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.97 E-value=3.7e-09 Score=81.25 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=68.0
Q ss_pred cccccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccC
Q 028884 101 PLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 179 (202)
...+.++|.+++|+|+.++. ++..+.+|+..+... ++|+++|+||+|+.+.. .......+....+.+++.+|++
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~---~ip~iIVlNK~DL~~~~--~~~~~~~~~~~~g~~v~~vSA~ 147 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAA---GIEPVIVLTKADLLDDE--EEELELVEALALGYPVLAVSAK 147 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHc---CCCEEEEEEHHHCCChH--HHHHHHHHHHhCCCeEEEEECC
Confidence 33478899999999999887 778888888776643 68899999999986541 1122333445577889999999
Q ss_pred CCCCHHHHHHHHHH
Q 028884 180 TADNINQLFEEIAK 193 (202)
Q Consensus 180 ~~~~i~~~~~~l~~ 193 (202)
++.|+++++..|..
T Consensus 148 ~g~gi~~L~~~L~~ 161 (287)
T cd01854 148 TGEGLDELREYLKG 161 (287)
T ss_pred CCccHHHHHhhhcc
Confidence 99999999888753
No 329
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.95 E-value=3e-08 Score=76.53 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=80.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC----------ccccceeEEEEEEEecCCcEEEEEEEeCCChh----
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE---- 94 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---- 94 (202)
.+.-.++|+++|+.|.|||||+|+|++....... .++....... .....++-.+.+.++||||..
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~-~~l~e~~~~~~l~vIDtpGfGD~id 97 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITK-AELEEDGFHLNLTVIDTPGFGDFID 97 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeee-eeeecCCeEEEEEEeccCCcccccc
Confidence 3356899999999999999999999986332221 1222222222 223335556899999999911
Q ss_pred --------------hhhh-------cccc-cc--cCccEEEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCC
Q 028884 95 --------------RYAA-------LAPL-YY--RGAAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKA 149 (202)
Q Consensus 95 --------------~~~~-------~~~~-~~--~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~ 149 (202)
.+.. ..+. -+ ..+++++|.+.++.-. +..+ -..+..+.. .+-+|.|+.|.
T Consensus 98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~-l~~~DIe~Mk~ls~----~vNlIPVI~Ka 172 (373)
T COG5019 98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHG-LKPLDIEAMKRLSK----RVNLIPVIAKA 172 (373)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCC-CCHHHHHHHHHHhc----ccCeeeeeecc
Confidence 1110 0111 11 2367888888766431 2222 223333433 35589999999
Q ss_pred CCCCCCC--CChHHHHHHHHHcCCeEEE
Q 028884 150 DLHEKRE--VPAQDGIEYAEKNGMFFIE 175 (202)
Q Consensus 150 D~~~~~~--~~~~~~~~~~~~~~~~~~~ 175 (202)
|.....+ .-...+++....+++++|.
T Consensus 173 D~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 173 DTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred ccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 9765322 1223344555566777664
No 330
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.94 E-value=3.3e-08 Score=79.30 Aligned_cols=113 Identities=17% Similarity=0.250 Sum_probs=77.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh----------HHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD----------SFNKAQYWVKELQK-HGSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----------s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~ 151 (202)
..+.++|++|+...+..|..++.+++++|||+++++.+ .+.+....++.+-. ..-.+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 57899999999999999999999999999999987532 13333333333322 22347899999999996
Q ss_pred CCC-----C-------------CCChHHHHHHHHHc--------C--C--eEEEeccCCCCCHHHHHHHHHHHc
Q 028884 152 HEK-----R-------------EVPAQDGIEYAEKN--------G--M--FFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 152 ~~~-----~-------------~~~~~~~~~~~~~~--------~--~--~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
..+ . ....+.+..+.... . . .+..++|.+..++..+|+.+.+.|
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 321 0 12334455444431 1 2 356789999999999999988754
No 331
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=1.7e-08 Score=73.53 Aligned_cols=157 Identities=18% Similarity=0.234 Sum_probs=86.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-----c--cccceeEEEEE-EEecCCcEEEEEEEeCCCh-------
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----K--VTVGASFLSQT-IALQDSTTVKFEIWDTAGQ------- 93 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----~--~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~------- 93 (202)
+....++|.|+|..|.|||||+|+|+........ . .+.+....... +...++-...+.++||||.
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 3456899999999999999999999875432211 1 11111221111 2223555688999999991
Q ss_pred -----------hhh--------hhcccccccC--ccEEEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 94 -----------ERY--------AALAPLYYRG--AAVAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 94 -----------~~~--------~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
+.| .......++. +++.+|.+..+. .++..+ -++++.+... +.++-|+.|.|-
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~v----vNvvPVIakaDt 196 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTEV----VNVVPVIAKADT 196 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhhh----heeeeeEeeccc
Confidence 111 1122233333 445555555543 223333 3344444332 448889999995
Q ss_pred CC--CCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 152 HE--KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 152 ~~--~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
.. ++..-.+.+++....+++.+|+--+.+...-+..++.
T Consensus 197 lTleEr~~FkqrI~~el~~~~i~vYPq~~fded~ed~~lN~ 237 (336)
T KOG1547|consen 197 LTLEERSAFKQRIRKELEKHGIDVYPQDSFDEDLEDKTLND 237 (336)
T ss_pred ccHHHHHHHHHHHHHHHHhcCcccccccccccchhHHHHHH
Confidence 43 2222334455555567777777655554433333333
No 332
>PRK12288 GTPase RsgA; Reviewed
Probab=98.92 E-value=8.5e-09 Score=80.96 Aligned_cols=88 Identities=17% Similarity=0.186 Sum_probs=68.0
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC-CChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE-VPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
..++|.+++|++.....++..+..|+..+.. .++|++||+||+|+..... .............+.+++.+|++++.
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~---~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~ 194 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACET---LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGE 194 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCc
Confidence 4669999999999888889999999875543 4688999999999965432 11222333445678899999999999
Q ss_pred CHHHHHHHHHHH
Q 028884 183 NINQLFEEIAKR 194 (202)
Q Consensus 183 ~i~~~~~~l~~~ 194 (202)
|++++++.|...
T Consensus 195 GideL~~~L~~k 206 (347)
T PRK12288 195 GLEELEAALTGR 206 (347)
T ss_pred CHHHHHHHHhhC
Confidence 999999998754
No 333
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=8.8e-09 Score=79.44 Aligned_cols=123 Identities=14% Similarity=0.205 Sum_probs=79.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-cccceeEEEEEEEec------CCc----------------------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQ------DST---------------------- 81 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~---------------------- 81 (202)
+...=|+++|.-..||||||+.|+.+.++.... +..++++....+.-+ ++.
T Consensus 56 d~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954|consen 56 DAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred ccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHH
Confidence 455679999999999999999999998864432 233333333222111 000
Q ss_pred ----------EEEEEEEeCCChhh-----------hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCC
Q 028884 82 ----------TVKFEIWDTAGQER-----------YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI 140 (202)
Q Consensus 82 ----------~~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 140 (202)
.-.+.++||||.-+ |......+...+|.+|++||+..-+--++....+..++.++ -
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E---d 212 (532)
T KOG1954|consen 136 FMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE---D 212 (532)
T ss_pred HHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCc---c
Confidence 01578999999432 33445667778999999999875432234444555565553 3
Q ss_pred eEEEEEeCCCCCCCCC
Q 028884 141 VMALVGNKADLHEKRE 156 (202)
Q Consensus 141 p~ivv~nK~D~~~~~~ 156 (202)
.+-||+||.|..+.++
T Consensus 213 kiRVVLNKADqVdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQVDTQQ 228 (532)
T ss_pred eeEEEeccccccCHHH
Confidence 3788899999765433
No 334
>PRK00098 GTPase RsgA; Reviewed
Probab=98.90 E-value=6e-09 Score=80.48 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=64.4
Q ss_pred cccCccEEEEEEeCCChhHHH-HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFN-KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~-~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
.+.++|++++|+|+.++.... .+..|+..+.. .++|+++|+||+|+.+... ............+.+++.+|++++
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~---~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g 152 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA---NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG 152 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH---CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 358899999999998875443 44777766653 3689999999999863221 122344455567889999999999
Q ss_pred CCHHHHHHHHH
Q 028884 182 DNINQLFEEIA 192 (202)
Q Consensus 182 ~~i~~~~~~l~ 192 (202)
.|++++++.+.
T Consensus 153 ~gi~~L~~~l~ 163 (298)
T PRK00098 153 EGLDELKPLLA 163 (298)
T ss_pred ccHHHHHhhcc
Confidence 99999998874
No 335
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.89 E-value=2.6e-08 Score=77.24 Aligned_cols=164 Identities=17% Similarity=0.161 Sum_probs=102.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc--------------cccceeEEEEEEEecCCcE-------------
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------------VTVGASFLSQTIALQDSTT------------- 82 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~------------- 82 (202)
.+..+.+.++|+.+.|||||+-.|..+..+...- ...+.+.+...+.+.++..
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 4568999999999999999997776554322111 1123333344444433332
Q ss_pred -------EEEEEEeCCChhhhhhccc--ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 83 -------VKFEIWDTAGQERYAALAP--LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 83 -------~~~~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
..+.|+|+.|++.|-.... ..=+..|..++++.+++.-+- ..++.+-.+... +.|+++++||+|+..
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~-~tkEHLgi~~a~---~lPviVvvTK~D~~~ 269 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTK-MTKEHLGIALAM---ELPVIVVVTKIDMVP 269 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcch-hhhHhhhhhhhh---cCCEEEEEEecccCc
Confidence 3578999999998754332 233457999999999987321 224444444433 789999999999865
Q ss_pred CCCC--ChHHHHHH----------------------HHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 154 KREV--PAQDGIEY----------------------AEK---NGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 154 ~~~~--~~~~~~~~----------------------~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
...+ ..++..+. +.+ .-.|++.+|+.+|+|++- ++.+...+.++
T Consensus 270 ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~Gldl-L~e~f~~Lp~r 340 (527)
T COG5258 270 DDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDL-LDEFFLLLPKR 340 (527)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHH-HHHHHHhCCcc
Confidence 3211 01111111 111 124789999999999984 55556666555
No 336
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.89 E-value=7.1e-08 Score=74.93 Aligned_cols=85 Identities=15% Similarity=0.092 Sum_probs=55.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecC---------------CcEEEEEEEeCCChhh--
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD---------------STTVKFEIWDTAGQER-- 95 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~i~D~~G~~~-- 95 (202)
.+++.++|.|++|||||.|.++.........|..+.+...-.+.... .....+.++|.+|.-.
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GA 81 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGA 81 (372)
T ss_pred CceeEEecCCCCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCc
Confidence 47899999999999999999998775434444444433333222211 1135688999998421
Q ss_pred -----hhhcccccccCccEEEEEEeCC
Q 028884 96 -----YAALAPLYYRGAAVAVVVYDIT 117 (202)
Q Consensus 96 -----~~~~~~~~~~~~d~~i~v~d~~ 117 (202)
..-..-..++.+|+++-|++..
T Consensus 82 s~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 82 SKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred ccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 2222333477799999998875
No 337
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.84 E-value=6.4e-09 Score=83.68 Aligned_cols=158 Identities=21% Similarity=0.397 Sum_probs=112.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
-+++|+.|+|..++|||+|+++|+.+.|.+...+ .+..+ .+.+.. ++....+.+.|.+|... ..+...+|++
T Consensus 28 ipelk~givg~~~sgktalvhr~ltgty~~~e~~-e~~~~-kkE~vv-~gqs~lLlirdeg~~~~-----aQft~wvdav 99 (749)
T KOG0705|consen 28 IPELKLGIVGTSQSGKTALVHRYLTGTYTQDESP-EGGRF-KKEVVV-DGQSHLLLIRDEGGHPD-----AQFCQWVDAV 99 (749)
T ss_pred cchhheeeeecccCCceeeeeeeccceeccccCC-cCccc-eeeEEe-eccceEeeeecccCCch-----hhhhhhccce
Confidence 3579999999999999999999999888665443 33333 333333 34446788888888432 3345568999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCC--CCCCChHHHHHHHHH-cCCeEEEeccCCCCCHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHE--KREVPAQDGIEYAEK-NGMFFIETSAKTADNINQ 186 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~--~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~ 186 (202)
|+||...+..+|+.+..+...+... ....+|.++++++.-... .+.+......+++.. ..+.+|+.++..|-++..
T Consensus 100 Ifvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv~r 179 (749)
T KOG0705|consen 100 VFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNVER 179 (749)
T ss_pred EEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhHHH
Confidence 9999999998898887766655433 234677888877655432 234444555555544 456799999999999999
Q ss_pred HHHHHHHHcC
Q 028884 187 LFEEIAKRLP 196 (202)
Q Consensus 187 ~~~~l~~~i~ 196 (202)
.|+.+...+.
T Consensus 180 vf~~~~~k~i 189 (749)
T KOG0705|consen 180 VFQEVAQKIV 189 (749)
T ss_pred HHHHHHHHHH
Confidence 9998877653
No 338
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=9.3e-08 Score=73.13 Aligned_cols=167 Identities=16% Similarity=0.201 Sum_probs=106.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhC----------CCCC----CCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRG----------QFDP----TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~----------~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
....+..||.-+|+...|||||--.+..- +|++ .....-+..+....+.|.-.. ..+.=+|+||+
T Consensus 49 ~R~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~-RhYaH~DCPGH 127 (449)
T KOG0460|consen 49 VRDKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAK-RHYAHTDCPGH 127 (449)
T ss_pred ccCCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccc-cccccCCCCch
Confidence 33467899999999999999998766531 1111 111222333333334333222 56778899999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC---CChHHHHHHHHHcC
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE---VPAQDGIEYAEKNG 170 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~ 170 (202)
..|-.....-....|+.|+|+.++|.. ..+.++.+...++... ..++|++||.|+.++.+ .-+.+++++..+++
T Consensus 128 ADYIKNMItGaaqMDGaILVVaatDG~-MPQTrEHlLLArQVGV--~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~g 204 (449)
T KOG0460|consen 128 ADYIKNMITGAAQMDGAILVVAATDGP-MPQTREHLLLARQVGV--KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFG 204 (449)
T ss_pred HHHHHHhhcCccccCceEEEEEcCCCC-CcchHHHHHHHHHcCC--ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcC
Confidence 998776666666789999999999874 3455666655565543 23778889999885432 23445666666664
Q ss_pred -----CeEEEec---cCCCCC-------HHHHHHHHHHHcCCC
Q 028884 171 -----MFFIETS---AKTADN-------INQLFEEIAKRLPRP 198 (202)
Q Consensus 171 -----~~~~~~s---~~~~~~-------i~~~~~~l~~~i~~~ 198 (202)
+|++.=| |++|.+ +..+++.+-++|..|
T Consensus 205 f~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P 247 (449)
T KOG0460|consen 205 FDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTP 247 (449)
T ss_pred CCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCc
Confidence 4566644 566632 556666666655544
No 339
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.3e-08 Score=74.29 Aligned_cols=160 Identities=19% Similarity=0.219 Sum_probs=94.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEE-EEecCCcEEEEEEEeCCChhhhh---hcccccccCccE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT-IALQDSTTVKFEIWDTAGQERYA---ALAPLYYRGAAV 109 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~~---~~~~~~~~~~d~ 109 (202)
.+|+++|...|||||+-+-.+..-. +... ...+.+.+. ...--+..+.+++||.||+-.+- --....++.+.+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMs-PneT--lflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~gA 104 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMS-PNET--LFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVGA 104 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccC-CCce--eEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccCe
Confidence 4599999999999998766655332 2211 111111111 01111244789999999976532 223456788999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCCCCCCC--hHHHHHHH---------HHcCCeEEEe
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHEKREVP--AQDGIEYA---------EKNGMFFIET 176 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~---------~~~~~~~~~~ 176 (202)
+|+|+|+.+.- .+.+......+.+. -++++.+-|++.|.|...+.... ..++.+.. ....+.++.+
T Consensus 105 LifvIDaQddy-~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDDY-MEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHHH-HHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 99999998752 22333333333332 47788899999999976532111 11111111 1123457777
Q ss_pred ccCCCCCHHHHHHHHHHHcCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
|..+ -++-++|..+++.+.+.
T Consensus 184 SIyD-HSIfEAFSkvVQkLipq 204 (347)
T KOG3887|consen 184 SIYD-HSIFEAFSKVVQKLIPQ 204 (347)
T ss_pred eecc-hHHHHHHHHHHHHHhhh
Confidence 7766 66888999888887654
No 340
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=5.4e-08 Score=79.01 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=86.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
...++.+-++|+|+||+||||||+.|...-...... .+ .-.+....+...++.+.++|.. ..++. ...+-+
T Consensus 64 ~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~-~i-----~GPiTvvsgK~RRiTflEcp~D--l~~mi-DvaKIa 134 (1077)
T COG5192 64 KDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTID-EI-----RGPITVVSGKTRRITFLECPSD--LHQMI-DVAKIA 134 (1077)
T ss_pred ccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhh-cc-----CCceEEeecceeEEEEEeChHH--HHHHH-hHHHhh
Confidence 444678889999999999999999887633211111 11 1112222455579999999943 23332 245668
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHH-----HHHHH-cCCeEEEeccCCC
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI-----EYAEK-NGMFFIETSAKTA 181 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-----~~~~~-~~~~~~~~s~~~~ 181 (202)
|.|++++|.+-+..++. -+|+..+..+..+. ++-|+|+.|+.....-...... -|-.. .++++|.+|...+
T Consensus 135 DLVlLlIdgnfGfEMET-mEFLnil~~HGmPr--vlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFylsgV~n 211 (1077)
T COG5192 135 DLVLLLIDGNFGFEMET-MEFLNILISHGMPR--VLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLSGVEN 211 (1077)
T ss_pred heeEEEeccccCceehH-HHHHHHHhhcCCCc--eEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEeccccc
Confidence 99999999998844443 44666666664332 6677899998765332111111 11111 2667777775543
No 341
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.4e-07 Score=78.04 Aligned_cols=147 Identities=15% Similarity=0.222 Sum_probs=89.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEE--------------------------------------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS-------------------------------------- 72 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~-------------------------------------- 72 (202)
....||++.|..++||||++|.++..+.-+......+..+..
T Consensus 107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence 456899999999999999999998865433322111111111
Q ss_pred -----EEEEecCCcE----EEEEEEeCCChh---hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCC
Q 028884 73 -----QTIALQDSTT----VKFEIWDTAGQE---RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI 140 (202)
Q Consensus 73 -----~~~~~~~~~~----~~~~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~ 140 (202)
-.+.++++.. =.+.++|.||.+ ...+....+...+|++|+|..+.+-.+..+ .+++..+... +.
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~se-k~Ff~~vs~~---Kp 262 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSE-KQFFHKVSEE---KP 262 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHH-HHHHHHhhcc---CC
Confidence 0111111100 147899999954 345666677788999999999888644333 3344444332 23
Q ss_pred eEEEEEeCCCCCCCCCCChHHHHHHHHHcCC--------eEEEeccCCC
Q 028884 141 VMALVGNKADLHEKREVPAQDGIEYAEKNGM--------FFIETSAKTA 181 (202)
Q Consensus 141 p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~--------~~~~~s~~~~ 181 (202)
.++|+.||+|.....+.-.++......++.. .++++|++.-
T Consensus 263 niFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e~ 311 (749)
T KOG0448|consen 263 NIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKEV 311 (749)
T ss_pred cEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccch
Confidence 3666678999876655545555555444322 4788886654
No 342
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.77 E-value=1.1e-08 Score=76.04 Aligned_cols=156 Identities=21% Similarity=0.188 Sum_probs=90.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA 98 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 98 (202)
.....+++++|..++|||||||-++..+....... ..+.......+.. + -.+.++|.|| ...+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-~---~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-G---KSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-c---ceEEEEecCCcccccCCccCcchHhH
Confidence 45679999999999999999999988654333322 2222222222222 1 3688899999 122333
Q ss_pred cccccccCcc---EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC------CCC-----hHHHHH
Q 028884 99 LAPLYYRGAA---VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR------EVP-----AQDGIE 164 (202)
Q Consensus 99 ~~~~~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------~~~-----~~~~~~ 164 (202)
+...|+.+-+ -+++++|++-+ +..... ..+.-.+..++|..+|+||+|..... ... ......
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~--i~~~D~--~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~ 284 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVP--IQPTDN--PEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIR 284 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCC--CCCCCh--HHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeehhhccc
Confidence 4444443322 34566777654 221111 11222334589999999999975321 111 111122
Q ss_pred HHHHcCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 165 YAEKNGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 165 ~~~~~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
.+.....+.+.+|+.++.|+++++-.+.+
T Consensus 285 ~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 285 GVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred cceeccCCceeeecccccCceeeeeehhh
Confidence 22233456778999999999987765544
No 343
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=5.5e-08 Score=77.08 Aligned_cols=95 Identities=28% Similarity=0.304 Sum_probs=68.5
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHH----HHHHH
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEK 168 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~ 168 (202)
.+.|..+...+.+.++++++|+|+.+.. ..|...+.... .+.|+++|+||+|+.... ...+... ++++.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~-~~~piilV~NK~DLl~k~-~~~~~~~~~l~~~~k~ 122 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV-GGNPVLLVGNKIDLLPKS-VNLSKIKEWMKKRAKE 122 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh-CCCCEEEEEEchhhCCCC-CCHHHHHHHHHHHHHH
Confidence 4678888888888999999999997652 22334444332 267899999999986532 2233333 33555
Q ss_pred cCC---eEEEeccCCCCCHHHHHHHHHHH
Q 028884 169 NGM---FFIETSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 169 ~~~---~~~~~s~~~~~~i~~~~~~l~~~ 194 (202)
.++ .++.+||+++.|++++++.|.+.
T Consensus 123 ~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 123 LGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred cCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 665 38999999999999999999765
No 344
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.76 E-value=1.8e-07 Score=69.12 Aligned_cols=153 Identities=17% Similarity=0.120 Sum_probs=95.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhcccccccC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYRG 106 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~~ 106 (202)
.+|-++|-|.+||||++..+.+... +......++-.+..-....++ ..+++.|.||.-+ .........+.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s-~vasyefttl~~vpG~~~y~g--aKiqlldlpgiiegakdgkgrg~qviavart 136 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFS-EVAAYEFTTLTTVPGVIRYKG--AKIQLLDLPGIIEGAKDGKGRGKQVIAVART 136 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCC-ccccccceeEEEecceEeccc--cceeeecCcchhcccccCCCCccEEEEEeec
Confidence 4899999999999999999987543 222222233222222221222 3799999999432 23455667788
Q ss_pred ccEEEEEEeCCChhHHHHH-HHHHHHHHHc--------------------------------------------------
Q 028884 107 AAVAVVVYDITSPDSFNKA-QYWVKELQKH-------------------------------------------------- 135 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~-------------------------------------------------- 135 (202)
++.+++|.|...|-+-..+ .+.++-+--+
T Consensus 137 cnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hsAdi~Lr~Da 216 (358)
T KOG1487|consen 137 CNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHSADIALRFDA 216 (358)
T ss_pred ccEEEEEeeccCcccHHHHHHHhhhcceeeccCCCCCccccccccCceeeecchhhHHHHHHHHHHhhhcchheeeecCc
Confidence 9999999998877443332 3333311000
Q ss_pred ---------C--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 136 ---------G--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 136 ---------~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+ ..-+|+++++||+|...-++.. -.. .-...+.+|+.+++|++++++.+.+.+.
T Consensus 217 T~DdLIdvVegnr~yVp~iyvLNkIdsISiEELd-----ii~--~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487|consen 217 TADDLIDVVEGNRIYVPCIYVLNKIDSISIEELD-----IIY--TIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred chhhhhhhhccCceeeeeeeeecccceeeeeccc-----eee--eccceeecccccccchHHHHHHHhhcch
Confidence 0 0147788888888854322111 110 1123688999999999999999988764
No 345
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.75 E-value=2.9e-08 Score=69.59 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=56.9
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
.+..+|++++|+|++++..- ....+...+... ..++|+++|+||+|+.+.... ......+........+.+|++.+.
T Consensus 5 ~l~~aD~il~VvD~~~p~~~-~~~~i~~~l~~~-~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~ 81 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGT-RCKHVEEYLKKE-KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPF 81 (157)
T ss_pred hhhhCCEEEEEEECCCCccc-cCHHHHHHHHhc-cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeeccccc
Confidence 46779999999999987321 112222223322 346899999999998643211 111112222222235779999999
Q ss_pred CHHHHHHHHHHHc
Q 028884 183 NINQLFEEIAKRL 195 (202)
Q Consensus 183 ~i~~~~~~l~~~i 195 (202)
|++++++.|.+.+
T Consensus 82 ~~~~L~~~l~~~~ 94 (157)
T cd01858 82 GKGSLIQLLRQFS 94 (157)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999998764
No 346
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=98.75 E-value=9.9e-07 Score=69.75 Aligned_cols=154 Identities=19% Similarity=0.217 Sum_probs=89.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCC----------------Cccccce--------eEEEEEEEecCCcEEEEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPT----------------SKVTVGA--------SFLSQTIALQDSTTVKFEIW 88 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------------~~~~~~~--------~~~~~~~~~~~~~~~~~~i~ 88 (202)
.+=|.|+|+..+||||||+||...-..+. ....-+. .-....+.+.++-.+++.++
T Consensus 17 dIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 17 DIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred ceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 47789999999999999999976422111 0000000 01111344556667899999
Q ss_pred eCCChh-------------h----------------hhhccccccc--CccEEEEEEeCCC----hhHHHHH-HHHHHHH
Q 028884 89 DTAGQE-------------R----------------YAALAPLYYR--GAAVAVVVYDITS----PDSFNKA-QYWVKEL 132 (202)
Q Consensus 89 D~~G~~-------------~----------------~~~~~~~~~~--~~d~~i~v~d~~~----~~s~~~~-~~~~~~i 132 (202)
|+.|-- + ...-++..+. ..-++++.-|.+- ++.+... .+.+..+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999810 0 0000111111 1237777788762 3344333 4444555
Q ss_pred HHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC--CCCHHHHHHHH
Q 028884 133 QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT--ADNINQLFEEI 191 (202)
Q Consensus 133 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~~i~~~~~~l 191 (202)
... ++|++|++|-.+- ......+...++..+++++++.+++.. ..++..+++.+
T Consensus 177 k~i---gKPFvillNs~~P--~s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~v 232 (492)
T PF09547_consen 177 KEI---GKPFVILLNSTKP--YSEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEV 232 (492)
T ss_pred HHh---CCCEEEEEeCCCC--CCHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHH
Confidence 544 7999999998872 233345556677778899988877654 33444444443
No 347
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.72 E-value=4.7e-08 Score=69.43 Aligned_cols=57 Identities=21% Similarity=0.315 Sum_probs=38.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
...++++|+|.||+|||||+|+|.+......... .+.......+.+. ..+.++||||
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~~~----~~~~l~DtPG 171 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVHLD----KKVKLLDSPG 171 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEEeC----CCEEEEECcC
Confidence 4468999999999999999999998765433332 2222222223322 2588999999
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.72 E-value=5e-08 Score=68.36 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=37.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
..++|+++|.+|+|||||+|+|.+.......... +.......+... . .+.++||||
T Consensus 101 ~~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~-g~T~~~~~~~~~--~--~~~liDtPG 156 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIP-GETKVWQYITLM--K--RIYLIDCPG 156 (157)
T ss_pred cceEEEEEeCCCCChHHHHHHHhcCCceeeCCCC-CeeEeEEEEEcC--C--CEEEEECcC
Confidence 4678999999999999999999986653333322 222222222221 2 378999999
No 349
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.69 E-value=5.2e-08 Score=67.07 Aligned_cols=54 Identities=28% Similarity=0.304 Sum_probs=37.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
+++++|.+|+|||||+|++.+......... .+.......+.+.+ .+.+|||||.
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSAT-PGKTKHFQTIFLTP----TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCC-CCcccceEEEEeCC----CEEEEECCCc
Confidence 899999999999999999998775433221 22222233333322 4799999995
No 350
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=1.2e-07 Score=73.40 Aligned_cols=160 Identities=16% Similarity=0.247 Sum_probs=98.8
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc--------------cc---------cceeEEEEEEEecCC---
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--------------VT---------VGASFLSQTIALQDS--- 80 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--------------~~---------~~~~~~~~~~~~~~~--- 80 (202)
.....-.++++|+|.-.+|||||+--|..+..+...- .. .+.+.....+.+.+.
T Consensus 161 d~QqfievRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~ta 240 (591)
T KOG1143|consen 161 DSQQFIEVRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTA 240 (591)
T ss_pred CcccceEEEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccH
Confidence 3334458999999999999999998777654322211 00 111111111111111
Q ss_pred ------cEEEEEEEeCCChhhhhhcccccccC--ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 81 ------TTVKFEIWDTAGQERYAALAPLYYRG--AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 81 ------~~~~~~i~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
..-.+.++|..|+.+|.......+.+ .|.++++++++....+. .++.+-.+... ++|++|+++|+|+.
T Consensus 241 EEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~t-TrEHLgl~~AL---~iPfFvlvtK~Dl~ 316 (591)
T KOG1143|consen 241 EEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWT-TREHLGLIAAL---NIPFFVLVTKMDLV 316 (591)
T ss_pred HHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccc-cHHHHHHHHHh---CCCeEEEEEeeccc
Confidence 12358899999999998777666654 48899999998774432 34455555544 79999999999986
Q ss_pred CCCCC------------------------ChHHHH----HHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 153 EKREV------------------------PAQDGI----EYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 153 ~~~~~------------------------~~~~~~----~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
..... ...++. +.+...-.|++.+|+..|++++-+-..
T Consensus 317 ~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~f 382 (591)
T KOG1143|consen 317 DRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTF 382 (591)
T ss_pred cchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHH
Confidence 54211 111111 111122346888999999998754433
No 351
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.64 E-value=1.2e-07 Score=66.24 Aligned_cols=82 Identities=20% Similarity=0.107 Sum_probs=54.3
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHH-HHHHHcCCeEEEeccCCCCCHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI-EYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
|++++|+|+.++.+.. ..++.. ......++|+++|+||+|+.+... ..... .+.......++.+|++++.|+++
T Consensus 1 Dvvl~VvD~~~p~~~~--~~~i~~-~~~~~~~~p~IiVlNK~Dl~~~~~--~~~~~~~~~~~~~~~ii~vSa~~~~gi~~ 75 (155)
T cd01849 1 DVILEVLDARDPLGTR--SPDIER-VLIKEKGKKLILVLNKADLVPKEV--LRKWLAYLRHSYPTIPFKISATNGQGIEK 75 (155)
T ss_pred CEEEEEEeccCCcccc--CHHHHH-HHHhcCCCCEEEEEechhcCCHHH--HHHHHHHHHhhCCceEEEEeccCCcChhh
Confidence 7899999999875433 223321 112234789999999999854321 11111 23233455689999999999999
Q ss_pred HHHHHHHH
Q 028884 187 LFEEIAKR 194 (202)
Q Consensus 187 ~~~~l~~~ 194 (202)
+++.+.+.
T Consensus 76 L~~~i~~~ 83 (155)
T cd01849 76 KESAFTKQ 83 (155)
T ss_pred HHHHHHHH
Confidence 99988764
No 352
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.60 E-value=1.5e-07 Score=78.53 Aligned_cols=115 Identities=20% Similarity=0.177 Sum_probs=75.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC------------CCCCCc--cccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ------------FDPTSK--VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
..-+|+++.+...|||||+..|.... |..... .+-+..-....+.+.... +.+.++|+||+-.|.
T Consensus 8 ~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~-~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKD-YLINLIDSPGHVDFS 86 (887)
T ss_pred ceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCc-eEEEEecCCCccchh
Confidence 45789999999999999999998642 111111 111111111122222233 789999999999999
Q ss_pred hcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
+......+-+|++++++|+..+-.-+.. ..+++.-..+..+++|+||+|.
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~----~vlrq~~~~~~~~~lvinkidr 136 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY----AVLRQAWIEGLKPILVINKIDR 136 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH----HHHHHHHHccCceEEEEehhhh
Confidence 9999999999999999999876322221 1111110123447899999993
No 353
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.59 E-value=1.2e-06 Score=64.89 Aligned_cols=89 Identities=12% Similarity=0.074 Sum_probs=53.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCCCCCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhhhhh------ccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQERYAA------LAP 101 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~ 101 (202)
.+..-|.|+|++++|||+|+|+|++. .+....... .+..+-........+....+.++||+|...... ...
T Consensus 5 ~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~ 84 (224)
T cd01851 5 FPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARL 84 (224)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHH
Confidence 34567889999999999999999997 543332211 111111111111112236899999999653221 122
Q ss_pred ccccC--ccEEEEEEeCCCh
Q 028884 102 LYYRG--AAVAVVVYDITSP 119 (202)
Q Consensus 102 ~~~~~--~d~~i~v~d~~~~ 119 (202)
..+.. +|++|+..+....
T Consensus 85 ~~l~~llss~~i~n~~~~~~ 104 (224)
T cd01851 85 FALATLLSSVLIYNSWETIL 104 (224)
T ss_pred HHHHHHHhCEEEEeccCccc
Confidence 22333 7899988887754
No 354
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.58 E-value=1.9e-07 Score=66.33 Aligned_cols=98 Identities=21% Similarity=0.217 Sum_probs=63.5
Q ss_pred CCChh-hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH
Q 028884 90 TAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168 (202)
Q Consensus 90 ~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 168 (202)
.||+- +.-......++.+|++++|+|++++..... ..++..+ .++|+++|+||+|+.+... .....++...
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~-~~i~~~~-----~~k~~ilVlNK~Dl~~~~~--~~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRN-PLLEKIL-----GNKPRIIVLNKADLADPKK--TKKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCC-hhhHhHh-----cCCCEEEEEehhhcCChHH--HHHHHHHHHh
Confidence 35543 233445667888999999999987643211 1122211 2478999999999854311 1122233333
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 169 NGMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 169 ~~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
....++.+|++++.|++++.+.+.+.+
T Consensus 74 ~~~~vi~iSa~~~~gi~~L~~~l~~~l 100 (171)
T cd01856 74 KGEKVLFVNAKSGKGVKKLLKAAKKLL 100 (171)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHH
Confidence 455689999999999999999998865
No 355
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.56 E-value=2.7e-07 Score=65.64 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=39.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
...++++++|.+|+|||||+|++.+..+..... ..+.......+.+. ..+.++||||.
T Consensus 113 ~~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~-~~~~T~~~~~~~~~----~~~~~iDtpG~ 170 (171)
T cd01856 113 PRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGN-KPGVTKGIQWIKIS----PGIYLLDTPGI 170 (171)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCEEeeeEEEEec----CCEEEEECCCC
Confidence 345899999999999999999999876532222 22222323333332 25789999994
No 356
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.55 E-value=1.9e-07 Score=67.58 Aligned_cols=57 Identities=21% Similarity=0.333 Sum_probs=36.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCC-------CCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDP-------TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
..+++++|.+|+|||||+|+|.+..... ......++......+.... .+.++||||.
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~----~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN----GKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC----CCEEEeCcCC
Confidence 4689999999999999999999854311 1111122333333333322 4789999993
No 357
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.54 E-value=3e-07 Score=70.39 Aligned_cols=58 Identities=28% Similarity=0.386 Sum_probs=39.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
...++++|+|.||+|||||+|+|.+......... .+.+.....+.+.. .+.++||||.
T Consensus 116 ~~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~-~g~T~~~~~~~~~~----~~~l~DtPG~ 173 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNR-PGVTKGQQWIKLSD----GLELLDTPGI 173 (276)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCccccCCC-CCeecceEEEEeCC----CEEEEECCCc
Confidence 3578999999999999999999998664333322 22222222333321 4789999996
No 358
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.4e-07 Score=74.03 Aligned_cols=119 Identities=16% Similarity=0.155 Sum_probs=83.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--------CCCCCCc--------cccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--------QFDPTSK--------VTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
...-+|.|+.+..+||||.-++++.- ..+.... ...+..+....+..+... +++.++||||+.
T Consensus 35 akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg-~rinlidtpghv 113 (753)
T KOG0464|consen 35 AKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKG-HRINLIDTPGHV 113 (753)
T ss_pred hhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccccc-ceEeeecCCCcc
Confidence 34568899999999999999988652 1111111 111222323333333333 689999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
.|+-..+.+++.-|+++.|||.+.+-..+.+.-| ++....++|-+.++||+|....
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvw----rqadk~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW----RQADKFKIPAHCFINKMDKLAA 169 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeee----hhccccCCchhhhhhhhhhhhh
Confidence 9999999999999999999999987555555555 4445678999999999997543
No 359
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=98.53 E-value=4.1e-07 Score=67.35 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=76.2
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh-------HHHHHHHHHHHHHH---c-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-------SFNKAQYWVKELQK---H-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~i~~---~-~~~~~p~ivv~nK~D~ 151 (202)
+.|+.+|.+|+..-+..|..++...-++|+|+..+... +...+++-+..++. . -...+.+|+++||.|+
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl 281 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 281 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence 67999999999999999999999999999999887532 22233333333222 1 1235679999999997
Q ss_pred CCC------------------------------CCCChHHHHHHHHH-------------cCCeEEEeccCCCCCHHHHH
Q 028884 152 HEK------------------------------REVPAQDGIEYAEK-------------NGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 152 ~~~------------------------------~~~~~~~~~~~~~~-------------~~~~~~~~s~~~~~~i~~~~ 188 (202)
..+ +......+..+.+. +-|-+.++.|.+.+++..+|
T Consensus 282 laeKi~Agk~~i~dyFpEf~~y~~p~da~~es~~d~~v~raK~fird~FlRiSta~~Dg~h~CYpHFTcAvDTenIrrVF 361 (379)
T KOG0099|consen 282 LAEKILAGKSKIEDYFPEFARYTTPEDATPESGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 361 (379)
T ss_pred HHHHHHcchhhHHHhChHHhccCCccccCCCCCCChhhHHHHHhhhhhHhhhccccCCCceecccceeEeechHHHHHHH
Confidence 421 01111111112211 12345678899999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
+.....|.+-
T Consensus 362 nDcrdiIqr~ 371 (379)
T KOG0099|consen 362 NDCRDIIQRM 371 (379)
T ss_pred HHHHHHHHHH
Confidence 9987776544
No 360
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.53 E-value=4.4e-07 Score=69.84 Aligned_cols=59 Identities=25% Similarity=0.359 Sum_probs=39.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
...++++|+|.||+|||||+|+|.+........ ..+.+.....+... . .+.++||||..
T Consensus 119 ~~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~~~~~--~--~~~l~DtPGi~ 177 (287)
T PRK09563 119 PRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQWIKLG--K--GLELLDTPGIL 177 (287)
T ss_pred cCceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEEEEeC--C--cEEEEECCCcC
Confidence 456899999999999999999999876533322 22222222223322 1 47899999963
No 361
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.52 E-value=1.4e-07 Score=65.76 Aligned_cols=60 Identities=28% Similarity=0.319 Sum_probs=33.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCc------cccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK------VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
-.++++|++|+|||||||.|.+........ ....+......+..+. ...++||||...+.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~----g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPD----GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETT----SEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCC----CcEEEECCCCCccc
Confidence 478899999999999999999864222211 1111112222333322 24788999976543
No 362
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.50 E-value=1.4e-05 Score=55.23 Aligned_cols=148 Identities=20% Similarity=0.282 Sum_probs=80.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCC-C------------------
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA-G------------------ 92 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~-G------------------ 92 (202)
..++|.|.|+||+||||++.++........+. .+.-+ ...+. .++..+-|.++|.. |
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~k--vgGf~-t~EVR-~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYK--VGGFI-TPEVR-EGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCce--eeeEE-eeeee-cCCeEeeeEEEEccCCceEEEEEcCCCCcccceE
Confidence 46899999999999999998887532211111 11111 11111 23444555555654 2
Q ss_pred ------hh-hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHH
Q 028884 93 ------QE-RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY 165 (202)
Q Consensus 93 ------~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~ 165 (202)
.+ ......+..++.+|++ ++|---+..+. .+++.+.+...-..++|++.++.+.+..+ ..+.
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvI--IIDEIGpMElk-s~~f~~~ve~vl~~~kpliatlHrrsr~P--------~v~~ 148 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVI--IIDEIGPMELK-SKKFREAVEEVLKSGKPLIATLHRRSRHP--------LVQR 148 (179)
T ss_pred EeeHHHHHHHhHHHHHHHhhcCCEE--EEecccchhhc-cHHHHHHHHHHhcCCCcEEEEEecccCCh--------HHHH
Confidence 11 0111223334446654 45655553222 24455555555456788888888776321 2223
Q ss_pred HHHcCCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 166 AEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 166 ~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
.+..+.-++. .+..|-+.+++.+.+.+..
T Consensus 149 ik~~~~v~v~---lt~~NR~~i~~~Il~~L~~ 177 (179)
T COG1618 149 IKKLGGVYVF---LTPENRNRILNEILSVLKG 177 (179)
T ss_pred hhhcCCEEEE---EccchhhHHHHHHHHHhcc
Confidence 3344444443 5666666888888887654
No 363
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.50 E-value=3.3e-07 Score=63.07 Aligned_cols=76 Identities=26% Similarity=0.311 Sum_probs=51.6
Q ss_pred ccccCccEEEEEEeCCChhHHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccC
Q 028884 102 LYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (202)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 179 (202)
..+..+|++++|+|+.++.+.. .+.+|+.. . ..++|+++|+||+|+.++.. .....+.....+..++++|++
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~---~-~~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~ 80 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKE---V-DPRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSAL 80 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCHHHHHHHHh---c-cCCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEec
Confidence 3467799999999999875433 33344332 2 24789999999999854321 223444555566789999999
Q ss_pred CCCC
Q 028884 180 TADN 183 (202)
Q Consensus 180 ~~~~ 183 (202)
++.+
T Consensus 81 ~~~~ 84 (141)
T cd01857 81 KENA 84 (141)
T ss_pred CCCc
Confidence 8764
No 364
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.48 E-value=4.2e-07 Score=69.60 Aligned_cols=99 Identities=19% Similarity=0.173 Sum_probs=64.5
Q ss_pred CChhh-hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc
Q 028884 91 AGQER-YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN 169 (202)
Q Consensus 91 ~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~ 169 (202)
|||-. ........+..+|++++|+|+..+.+... ..+.+.+ .++|+++|+||+|+.+... ...........
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~-~~i~~~l-----~~kp~IiVlNK~DL~~~~~--~~~~~~~~~~~ 76 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRN-PMIDEIR-----GNKPRLIVLNKADLADPAV--TKQWLKYFEEK 76 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCC-hhHHHHH-----CCCCEEEEEEccccCCHHH--HHHHHHHHHHc
Confidence 55542 22345566888999999999987743221 1111112 2578999999999854311 12222223334
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 170 GMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 170 ~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
+.+++.+|++++.|+.++.+.+.+.+.+
T Consensus 77 ~~~vi~iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 77 GIKALAINAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence 5678999999999999999998877654
No 365
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.47 E-value=6.8e-07 Score=62.49 Aligned_cols=56 Identities=25% Similarity=0.259 Sum_probs=37.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
...+++++|.+++|||||+|++.+...... .++.+.......+.. + ..+.+|||||
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~-~~~~~~t~~~~~~~~-~---~~~~~~DtpG 155 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSAST-SPSPGYTKGEQLVKI-T---SKIYLLDTPG 155 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCCeeeeeEEEEc-C---CCEEEEECcC
Confidence 457899999999999999999997553222 223333222222222 1 2589999999
No 366
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.47 E-value=5.8e-07 Score=70.72 Aligned_cols=84 Identities=14% Similarity=0.014 Sum_probs=56.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCC-CCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhh---
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQER--- 95 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~D~~G~~~--- 95 (202)
+++.++|.|++|||||.+.|++... .....+..+.......+.+++. ....+.++|.||...
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs 82 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGAS 82 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchh
Confidence 7899999999999999999999875 3333333333333333443332 124689999999543
Q ss_pred ----hhhcccccccCccEEEEEEeCC
Q 028884 96 ----YAALAPLYYRGAAVAVVVYDIT 117 (202)
Q Consensus 96 ----~~~~~~~~~~~~d~~i~v~d~~ 117 (202)
........++.+|+++.|++..
T Consensus 83 ~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 83 KGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred cccCcchHHHHHHHhCCEEEEEEeCC
Confidence 1123344578899999999974
No 367
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.46 E-value=7e-07 Score=62.41 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=38.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
....+++++|.+|+|||||+|.+.+........ +..+... ...... ..+.++||||.
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~--~~~~~~----~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQ--QEVKLD----NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccce--EEEEec----CCEEEEECCCC
Confidence 356889999999999999999999865322222 2222222 222222 25899999993
No 368
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.43 E-value=6.8e-07 Score=69.77 Aligned_cols=58 Identities=28% Similarity=0.377 Sum_probs=41.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
...+++.|+|-|++|||||||+|.+........ ..+.+.....+.... .+.++||||.
T Consensus 130 ~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~~~~----~i~LlDtPGi 187 (322)
T COG1161 130 KRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIKLDD----GIYLLDTPGI 187 (322)
T ss_pred ccceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEEcCC----CeEEecCCCc
Confidence 456889999999999999999999977633332 223333344444433 3899999994
No 369
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.42 E-value=2.7e-06 Score=59.70 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
+++.|..|+|||||++++...
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 679999999999999999875
No 370
>PRK12288 GTPase RsgA; Reviewed
Probab=98.41 E-value=6e-07 Score=70.63 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=36.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccc------cceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT------VGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
-++|+|.+|+|||||||+|++.......... -.+......+.+..+. .++||||..++.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~----~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG----DLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC----EEEECCCCCccc
Confidence 3789999999999999999986533222211 1122223334443332 489999976543
No 371
>PRK01889 GTPase RsgA; Reviewed
Probab=98.40 E-value=1.4e-06 Score=68.92 Aligned_cols=83 Identities=16% Similarity=0.165 Sum_probs=60.0
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-HcCCeEEEeccCCCC
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTAD 182 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~ 182 (202)
..++|.+++|+++..+.....+..++..+... +++.+||+||+|+.+... .....+.. ..+.+++.+|++++.
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~---~i~piIVLNK~DL~~~~~---~~~~~~~~~~~g~~Vi~vSa~~g~ 183 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWES---GAEPVIVLTKADLCEDAE---EKIAEVEALAPGVPVLAVSALDGE 183 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHc---CCCEEEEEEChhcCCCHH---HHHHHHHHhCCCCcEEEEECCCCc
Confidence 57899999999997655555667776666654 567899999999975311 11112221 346789999999999
Q ss_pred CHHHHHHHHH
Q 028884 183 NINQLFEEIA 192 (202)
Q Consensus 183 ~i~~~~~~l~ 192 (202)
|++++.++|.
T Consensus 184 gl~~L~~~L~ 193 (356)
T PRK01889 184 GLDVLAAWLS 193 (356)
T ss_pred cHHHHHHHhh
Confidence 9999888874
No 372
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.40 E-value=8.1e-07 Score=80.21 Aligned_cols=116 Identities=20% Similarity=0.170 Sum_probs=69.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCc--c--ccce-eEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSK--V--TVGA-SFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALA 100 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~--~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~ 100 (202)
.=.+|+|++|+||||+|.+- +..++.... . ..+. ..........+ +-.++||+|.- .....|
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~----~avliDtaG~y~~~~~~~~~~~~~W 186 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTD----EAVLIDTAGRYTTQDSDPEEDAAAW 186 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecC----CEEEEcCCCccccCCCcccccHHHH
Confidence 45689999999999999876 333322110 0 0000 01111111112 45699999921 112223
Q ss_pred cccc---------cCccEEEEEEeCCCh-----hH----HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 101 PLYY---------RGAAVAVVVYDITSP-----DS----FNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 101 ~~~~---------~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
..++ +-.+++|+++|+.+- .. -..++..+..+........|++|++||+|+...
T Consensus 187 ~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G 258 (1169)
T TIGR03348 187 LGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred HHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence 2222 247999999998642 11 134566677777776778999999999998754
No 373
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.38 E-value=4.1e-06 Score=65.25 Aligned_cols=161 Identities=13% Similarity=0.161 Sum_probs=90.5
Q ss_pred CCCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC------------------ccccceeEEEE------------
Q 028884 24 AGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQ------------ 73 (202)
Q Consensus 24 ~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~------------ 73 (202)
....+...-+++|+|+|...+|||||+--|..+..+... ....+.++--.
T Consensus 124 k~~~~~DF~E~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~ 203 (641)
T KOG0463|consen 124 KPPTEKDFIEARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDP 203 (641)
T ss_pred CCCCCccceeEEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCC
Confidence 334455566899999999999999999766554321110 01111111000
Q ss_pred ------EEEecCCcEEEEEEEeCCChhhhhhccccccc--CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEE
Q 028884 74 ------TIALQDSTTVKFEIWDTAGQERYAALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALV 145 (202)
Q Consensus 74 ------~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv 145 (202)
-+.+..+..-.+.|+|..|+++|-.....-.. ..|...+++-++... .-..++.+-... ..++|+++|
T Consensus 204 Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLAL---aL~VPVfvV 279 (641)
T KOG0463|consen 204 HGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLAL---ALHVPVFVV 279 (641)
T ss_pred CCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eeccHHhhhhhh---hhcCcEEEE
Confidence 01122222245789999999998665544333 247777777776541 111133333323 237889999
Q ss_pred EeCCCCCCCCCCChH--HHHHHHH--------------------------HcCCeEEEeccCCCCCHHHHH
Q 028884 146 GNKADLHEKREVPAQ--DGIEYAE--------------------------KNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 146 ~nK~D~~~~~~~~~~--~~~~~~~--------------------------~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++|+|........+. ....+.+ +.-|++|.+|..+|.|+.-+.
T Consensus 280 VTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLk 350 (641)
T KOG0463|consen 280 VTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLK 350 (641)
T ss_pred EEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHH
Confidence 999997553221110 1111111 122678999999999987543
No 374
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.37 E-value=1.1e-06 Score=68.30 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=54.4
Q ss_pred EEEEEEeCCChhh--------hhhccc---cc-ccCccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028884 83 VKFEIWDTAGQER--------YAALAP---LY-YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (202)
Q Consensus 83 ~~~~i~D~~G~~~--------~~~~~~---~~-~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 149 (202)
+.+.++||||... ...... .. -...+..++|+|++.+ +.+.+...+.+.+ .+.-+|+||.
T Consensus 197 ~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~~~~-------~~~giIlTKl 269 (318)
T PRK10416 197 IDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFHEAV-------GLTGIILTKL 269 (318)
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHHhhC-------CCCEEEEECC
Confidence 6899999999532 111111 11 1246788999999965 2333333222111 2357889999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
|.... .-.+.......+.|+..++ +|++++++
T Consensus 270 D~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl 301 (318)
T PRK10416 270 DGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDL 301 (318)
T ss_pred CCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhC
Confidence 94332 3345555667788888887 66666554
No 375
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.34 E-value=1.2e-06 Score=67.36 Aligned_cols=99 Identities=20% Similarity=0.221 Sum_probs=64.3
Q ss_pred CCChhhh-hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH
Q 028884 90 TAGQERY-AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168 (202)
Q Consensus 90 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 168 (202)
.|||-.- .......+..+|++|+|+|+.++.+... .++.... .++|+++|+||+|+.+... ......+...
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSEN--PMIDKII----GNKPRLLILNKSDLADPEV--TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh----CCCCEEEEEEchhcCCHHH--HHHHHHHHHH
Confidence 4665432 2344556788999999999987743221 1222221 1578999999999854211 1222222334
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 169 NGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 169 ~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
.+.+++.+|++++.|+.++.+.+.+.+.
T Consensus 79 ~~~~vi~vSa~~~~gi~~L~~~l~~~l~ 106 (287)
T PRK09563 79 QGIKALAINAKKGQGVKKILKAAKKLLK 106 (287)
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHHH
Confidence 4567899999999999999998877654
No 376
>PRK13796 GTPase YqeH; Provisional
Probab=98.33 E-value=5.3e-06 Score=65.96 Aligned_cols=94 Identities=29% Similarity=0.312 Sum_probs=60.6
Q ss_pred hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHH----HHHHHcC
Q 028884 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI----EYAEKNG 170 (202)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~----~~~~~~~ 170 (202)
.|...........+++++|+|+.+.. ..|...+.+.. .+.|+++|+||+|+.... ...+... .+++..+
T Consensus 58 ~~~~~l~~i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~-~~kpviLViNK~DLl~~~-~~~~~i~~~l~~~~k~~g 130 (365)
T PRK13796 58 DFLKLLNGIGDSDALVVNVVDIFDFN-----GSWIPGLHRFV-GNNPVLLVGNKADLLPKS-VKKNKVKNWLRQEAKELG 130 (365)
T ss_pred HHHHHHHhhcccCcEEEEEEECccCC-----CchhHHHHHHh-CCCCEEEEEEchhhCCCc-cCHHHHHHHHHHHHHhcC
Confidence 44444444333334899999998742 22333444332 267899999999996532 2222332 2344555
Q ss_pred C---eEEEeccCCCCCHHHHHHHHHHHc
Q 028884 171 M---FFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 171 ~---~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
+ .++.+||+++.|++++++.|.+..
T Consensus 131 ~~~~~v~~vSAk~g~gI~eL~~~I~~~~ 158 (365)
T PRK13796 131 LRPVDVVLISAQKGHGIDELLEAIEKYR 158 (365)
T ss_pred CCcCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 5 589999999999999999998764
No 377
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.32 E-value=4.3e-06 Score=63.77 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=54.8
Q ss_pred EEEEEEeCCChhhhhhc--------cc----ccccCccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028884 83 VKFEIWDTAGQERYAAL--------AP----LYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~--------~~----~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 149 (202)
+.+.++||+|....... .. ..-...|.+++|+|++.+ +.+.....+. +.. .+.-+|+||.
T Consensus 155 ~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~----~~~---~~~g~IlTKl 227 (272)
T TIGR00064 155 IDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFN----EAV---GLTGIILTKL 227 (272)
T ss_pred CCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHH----hhC---CCCEEEEEcc
Confidence 68999999996432211 11 112247899999999864 2333333322 211 1357789999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
|.... .-.+.......+.|+..++ +|++++++
T Consensus 228 De~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~~dl 259 (272)
T TIGR00064 228 DGTAK----GGIILSIAYELKLPIKFIG--VGEKIDDL 259 (272)
T ss_pred CCCCC----ccHHHHHHHHHCcCEEEEe--CCCChHhC
Confidence 95332 2344555556678887777 66766554
No 378
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.32 E-value=1.8e-06 Score=66.14 Aligned_cols=87 Identities=15% Similarity=0.121 Sum_probs=59.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCC--------------cEEEEEEEeCCChhh-
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS--------------TTVKFEIWDTAGQER- 95 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~i~D~~G~~~- 95 (202)
.+.++|.+||.|++|||||.|.|......+...|-.+.+.....+..... ....+.++|+.|.-.
T Consensus 18 ~~~lkiGIVGlPNvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491|consen 18 GNNLKIGIVGLPNVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCcceeeEeeCCCCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccC
Confidence 46799999999999999999999998776555555555554444443321 235789999998432
Q ss_pred ------hhhcccccccCccEEEEEEeCC
Q 028884 96 ------YAALAPLYYRGAAVAVVVYDIT 117 (202)
Q Consensus 96 ------~~~~~~~~~~~~d~~i~v~d~~ 117 (202)
..-.....++.+|+++-|++..
T Consensus 98 As~G~GLGN~FLs~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 98 ASAGEGLGNKFLSHIRHVDAIFHVVRAF 125 (391)
T ss_pred cccCcCchHHHHHhhhhccceeEEEEec
Confidence 1122233466788887777653
No 379
>PRK12289 GTPase RsgA; Reviewed
Probab=98.30 E-value=1.4e-06 Score=68.66 Aligned_cols=56 Identities=27% Similarity=0.286 Sum_probs=34.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCcccc------ceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTV------GASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
.++|+|.+|+|||||||.|.+........... .+......+...++. .++||||..
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~----~liDTPG~~ 235 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG----LLADTPGFN 235 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc----EEEeCCCcc
Confidence 37999999999999999999764332222111 122223334443332 689999943
No 380
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.30 E-value=1.3e-06 Score=66.43 Aligned_cols=59 Identities=25% Similarity=0.235 Sum_probs=38.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCC------CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQF------DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
..+++|.+|+|||||+|+|..... .......-.+......+..+++. .++||||..++.
T Consensus 166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG----~iiDTPGf~~~~ 230 (301)
T COG1162 166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG----WIIDTPGFRSLG 230 (301)
T ss_pred eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC----EEEeCCCCCccC
Confidence 678999999999999999987432 22222222333334445554444 578999976544
No 381
>PRK14974 cell division protein FtsY; Provisional
Probab=98.30 E-value=8.3e-07 Score=69.40 Aligned_cols=93 Identities=14% Similarity=0.142 Sum_probs=54.6
Q ss_pred EEEEEEeCCChhhhh----hccccc--ccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYA----ALAPLY--YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
+.+.++||+|..... ...... .-..|.+++|+|+..+. .......|...+ ..--+|+||.|....
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-------~~~giIlTKlD~~~~- 294 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-------GIDGVILTKVDADAK- 294 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-------CCCEEEEeeecCCCC-
Confidence 469999999964311 111111 12468889999997653 223333322211 124677899996432
Q ss_pred CCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 156 EVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
.-.+...+...+.|+..++ +|++++++.
T Consensus 295 ---~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~ 322 (336)
T PRK14974 295 ---GGAALSIAYVIGKPILFLG--VGQGYDDLI 322 (336)
T ss_pred ---ccHHHHHHHHHCcCEEEEe--CCCChhhcc
Confidence 2344555556788888776 688876654
No 382
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.23 E-value=3.1e-06 Score=63.68 Aligned_cols=57 Identities=21% Similarity=0.192 Sum_probs=35.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc------ccceeEEEEEEEecCCcEEEEEEEeCCChhh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV------TVGASFLSQTIALQDSTTVKFEIWDTAGQER 95 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~ 95 (202)
..++++|.+|+|||||||+|.+......... ...++.....+.. .+ -.++||||...
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l-~~----~~liDtPG~~~ 183 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF-HG----GLIADTPGFNE 183 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc-CC----cEEEeCCCccc
Confidence 3788999999999999999998643222111 1112222223333 22 26999999754
No 383
>PRK13695 putative NTPase; Provisional
Probab=98.22 E-value=5.4e-05 Score=53.92 Aligned_cols=83 Identities=18% Similarity=0.110 Sum_probs=45.4
Q ss_pred ccccccCccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEecc
Q 028884 100 APLYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
....+..+++ +++|--.+ +... ..+++.+......+.|++++.+|... ......+....+..++.+
T Consensus 90 ~~~~l~~~~~--lllDE~~~~e~~~--~~~~~~l~~~~~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~-- 156 (174)
T PRK13695 90 LERALEEADV--IIIDEIGKMELKS--PKFVKAVEEVLDSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL-- 156 (174)
T ss_pred HHhccCCCCE--EEEECCCcchhhh--HHHHHHHHHHHhCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE--
Confidence 3344556676 56773111 1111 22333333332346889999987531 123444555566677776
Q ss_pred CCCCCHHHHHHHHHHHcC
Q 028884 179 KTADNINQLFEEIAKRLP 196 (202)
Q Consensus 179 ~~~~~i~~~~~~l~~~i~ 196 (202)
+.+|-+++.+.+++.++
T Consensus 157 -~~~~r~~~~~~~~~~~~ 173 (174)
T PRK13695 157 -TPENRDSLPFEILNRLK 173 (174)
T ss_pred -cchhhhhHHHHHHHHHh
Confidence 45666688888887664
No 384
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=98.22 E-value=9.4e-05 Score=60.51 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=53.5
Q ss_pred EEEEEEeCCCh-------------hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028884 83 VKFEIWDTAGQ-------------ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (202)
Q Consensus 83 ~~~~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 149 (202)
-+..++|.||. +..-.+...|..+.+++|+|+--..-+.-. ...-..+......+...|+|++|.
T Consensus 412 qRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAER--SnVTDLVsq~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 412 QRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAER--SIVTDLVSQMDPHGRRTIFVLTKV 489 (980)
T ss_pred ceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhh--hhHHHHHHhcCCCCCeeEEEEeec
Confidence 47889999992 234466788899999999997543321111 112233344444567789999999
Q ss_pred CCCCCCCCChHHHHHHHH
Q 028884 150 DLHEKREVPAQDGIEYAE 167 (202)
Q Consensus 150 D~~~~~~~~~~~~~~~~~ 167 (202)
|+.+........++++..
T Consensus 490 DlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 490 DLAEKNVASPSRIQQIIE 507 (980)
T ss_pred chhhhccCCHHHHHHHHh
Confidence 998876555555555543
No 385
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.18 E-value=1.2e-05 Score=56.88 Aligned_cols=136 Identities=16% Similarity=0.267 Sum_probs=64.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeC-CCh--------------------
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDT-AGQ-------------------- 93 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~-~G~-------------------- 93 (202)
||++.|++|+|||||+++++......... ... +....+ ..++...-|.+.|. .|.
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l~~~~~~--v~G-f~t~ev-r~~g~r~GF~iv~l~~g~~~~la~~~~~~~~~vgky~v 76 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEELKKKGLP--VGG-FYTEEV-RENGRRIGFDIVDLNSGEEAILARVDFRSGPRVGKYFV 76 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHHHHTCGG--EEE-EEEEEE-ETTSSEEEEEEEET-TS-EEEEEETTSS-SCECTTCEE
T ss_pred CEEEECcCCCCHHHHHHHHHHHhhccCCc--cce-EEeecc-cCCCceEEEEEEECcCCCccccccccccccccCCCEEE
Confidence 68999999999999999988632111111 111 111111 13444455555555 331
Q ss_pred --hhhhhccccccc----CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH
Q 028884 94 --ERYAALAPLYYR----GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAE 167 (202)
Q Consensus 94 --~~~~~~~~~~~~----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~ 167 (202)
+.+.......++ .+| ++++|-=-+..+. ...|.+.+...-..++|++.++.+.- ......++..
T Consensus 77 ~~e~fe~~~~~~L~~~~~~~~--liviDEIG~mEl~-~~~F~~~v~~~l~s~~~vi~vv~~~~-------~~~~l~~i~~ 146 (168)
T PF03266_consen 77 DLESFEEIGLPALRNALSSSD--LIVIDEIGKMELK-SPGFREAVEKLLDSNKPVIGVVHKRS-------DNPFLEEIKR 146 (168)
T ss_dssp -HHHHHCCCCCCCHHHHHCCH--EEEE---STTCCC--CHHHHHHHHHHCTTSEEEEE--SS---------SCCHHHHHT
T ss_pred cHHHHHHHHHHHHHhhcCCCC--EEEEeccchhhhc-CHHHHHHHHHHHcCCCcEEEEEecCC-------CcHHHHHHHh
Confidence 222222222222 344 6777744331111 12233334333245788888887762 1123455666
Q ss_pred HcCCeEEEeccCCCCCH
Q 028884 168 KNGMFFIETSAKTADNI 184 (202)
Q Consensus 168 ~~~~~~~~~s~~~~~~i 184 (202)
..++.++++...+.+.+
T Consensus 147 ~~~~~i~~vt~~NRd~l 163 (168)
T PF03266_consen 147 RPDVKIFEVTEENRDAL 163 (168)
T ss_dssp TTTSEEEE--TTTCCCH
T ss_pred CCCcEEEEeChhHHhhH
Confidence 67788888876665544
No 386
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.16 E-value=5.2e-06 Score=65.92 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=35.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC----CCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP----TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
.++.++|.+|+|||||+|+|++..... ......+++.....+...+ .+.++||||..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~----~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD----GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC----CCEEEECCCCC
Confidence 589999999999999999999853211 1111122222222233222 35799999954
No 387
>PRK13796 GTPase YqeH; Provisional
Probab=98.15 E-value=4.8e-06 Score=66.25 Aligned_cols=57 Identities=23% Similarity=0.334 Sum_probs=34.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCC----CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPT----SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
.++.|+|.+|+|||||||+|........ .....+++.....+.+.++ ..++||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~----~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG----SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC----cEEEECCCcc
Confidence 4799999999999999999996431110 1111222222223333222 4799999963
No 388
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=98.13 E-value=5.3e-06 Score=60.54 Aligned_cols=116 Identities=17% Similarity=0.212 Sum_probs=74.1
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhH----------HHHHHHHHHHHHHcC-CCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS----------FNKAQYWVKELQKHG-SPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~ 151 (202)
+.+.++|.+|+..-+..|.+++.+.-.+++++.++..+. .++....+..+...- -.+.++|+++||.|+
T Consensus 199 iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkDl 278 (359)
T KOG0085|consen 199 IIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 278 (359)
T ss_pred heeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhhh
Confidence 567799999998888899999998888877777664321 222222222222221 125679999999998
Q ss_pred CCC----------------CCCChHHHHHHHHHc----C-----C-eEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 152 HEK----------------REVPAQDGIEYAEKN----G-----M-FFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 152 ~~~----------------~~~~~~~~~~~~~~~----~-----~-~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
.++ .....+.++.+..+. + + --..+.|.+.+|+.-+|.++.+.+...
T Consensus 279 LEekI~ySHl~~YFPe~~GP~qDa~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~ 351 (359)
T KOG0085|consen 279 LEEKILYSHLADYFPEFDGPKQDAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 351 (359)
T ss_pred hhhhhhHHHHHHhCcccCCCcccHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHh
Confidence 653 123334444454432 1 1 124467899999999999988877543
No 389
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=6.5e-05 Score=55.59 Aligned_cols=157 Identities=20% Similarity=0.317 Sum_probs=93.3
Q ss_pred eeeEEEEcCCCC--cHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc-E--EEEEEEeCCChhhhhhcccccccCc
Q 028884 33 RVKLVLLGDSGV--GKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST-T--VKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 33 ~~~i~v~G~~~~--GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
...++|+|-.|+ ||.+|+.+|....+.......-.+.+..+++ .+.+ . +.+.+.-.- +++.--........
T Consensus 4 rp~~lv~g~sgvfsg~~~ll~rl~s~dfed~ses~~~te~hgwti--d~kyysadi~lcishic--de~~lpn~~~a~pl 79 (418)
T KOG4273|consen 4 RPCALVTGCSGVFSGDQLLLHRLGSEDFEDESESNDATEFHGWTI--DNKYYSADINLCISHIC--DEKFLPNAEIAEPL 79 (418)
T ss_pred CceEEEecccccccchHHHHHHhcchhheeeccccCceeeeceEe--cceeeecceeEEeeccc--chhccCCcccccce
Confidence 357899999998 9999999999877755544433333333322 1111 0 222222211 11111111112234
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC--------------C------------------
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK--------------R------------------ 155 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--------------~------------------ 155 (202)
-+++.+||.+....+..++.|+...... ..++ .+-++||.|.... .
T Consensus 80 ~a~vmvfdlse~s~l~alqdwl~htdin-sfdi-llcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgiset 157 (418)
T KOG4273|consen 80 QAFVMVFDLSEKSGLDALQDWLPHTDIN-SFDI-LLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGISET 157 (418)
T ss_pred eeEEEEEeccchhhhHHHHhhccccccc-cchh-heecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccccc
Confidence 5788999999998899999997643221 1121 3445789886421 0
Q ss_pred ------------CCChHHHHHHHHHcCCeEEEeccCCC------------CCHHHHHHHHHHHc
Q 028884 156 ------------EVPAQDGIEYAEKNGMFFIETSAKTA------------DNINQLFEEIAKRL 195 (202)
Q Consensus 156 ------------~~~~~~~~~~~~~~~~~~~~~s~~~~------------~~i~~~~~~l~~~i 195 (202)
........+||.++++.+++.++... .|+..+|.+|-..+
T Consensus 158 egssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsqgverifgal~ahm 221 (418)
T KOG4273|consen 158 EGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQGVERIFGALNAHM 221 (418)
T ss_pred ccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchhhHHHHHHHhhhcc
Confidence 01223456788899999999887433 47888888876554
No 390
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.10 E-value=1.9e-05 Score=62.61 Aligned_cols=142 Identities=14% Similarity=0.094 Sum_probs=69.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC-C-Ccc-ccceeEE----------------EEEEEe----------cCCcE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-T-SKV-TVGASFL----------------SQTIAL----------QDSTT 82 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~-~~~-~~~~~~~----------------~~~~~~----------~~~~~ 82 (202)
..-.++++|++|+||||++..|....... . ... -++.+.. ...... ..-..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 34578899999999999999887532100 0 000 0000000 000000 00112
Q ss_pred EEEEEEeCCChhhhhh----cccc--cccCccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCC--CeEEEEEeCCCCCC
Q 028884 83 VKFEIWDTAGQERYAA----LAPL--YYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPD--IVMALVGNKADLHE 153 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~----~~~~--~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~ 153 (202)
..+.++||+|...... .... .....+-.++|++++.. +...++.+.+.......... -.--+|+||.|-..
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 4789999999553221 1111 11223456888888864 33343322222221110000 12356779999432
Q ss_pred CCCCChHHHHHHHHHcCCeEEEec
Q 028884 154 KREVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.+.......+.++..++
T Consensus 296 ----~~G~~l~~~~~~~lPi~yvt 315 (374)
T PRK14722 296 ----NLGGVLDTVIRYKLPVHYVS 315 (374)
T ss_pred ----CccHHHHHHHHHCcCeEEEe
Confidence 33455666666676655543
No 391
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.09 E-value=3.2e-05 Score=59.02 Aligned_cols=95 Identities=22% Similarity=0.218 Sum_probs=70.9
Q ss_pred hhcccccccCccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEE
Q 028884 97 AALAPLYYRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIE 175 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (202)
..+.+--+.+.|-+++++.+.+| .+...+.+++-..... ++..+|++||+|+.........+........+.+++.
T Consensus 70 n~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~---gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~ 146 (301)
T COG1162 70 NVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG---GIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLF 146 (301)
T ss_pred CceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc---CCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEE
Confidence 34455556668888888888877 4566677776666544 5667888999999876554435566677788999999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028884 176 TSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~ 194 (202)
+|++++.++.++.+++...
T Consensus 147 ~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 147 VSAKNGDGLEELAELLAGK 165 (301)
T ss_pred ecCcCcccHHHHHHHhcCC
Confidence 9999999999998887654
No 392
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.08 E-value=6.8e-05 Score=54.45 Aligned_cols=82 Identities=16% Similarity=0.121 Sum_probs=47.4
Q ss_pred EEEEEEeCCChhhh--------hhcccccccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 83 VKFEIWDTAGQERY--------AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 83 ~~~~i~D~~G~~~~--------~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
.++.++||+|.... ..+.... ..+-+++|.+++... ....+..+++.+ .. --+|+||.|...
T Consensus 84 ~D~vlIDT~Gr~~~d~~~~~el~~~~~~~--~~~~~~LVlsa~~~~~~~~~~~~~~~~~----~~---~~lIlTKlDet~ 154 (196)
T PF00448_consen 84 YDLVLIDTAGRSPRDEELLEELKKLLEAL--NPDEVHLVLSATMGQEDLEQALAFYEAF----GI---DGLILTKLDETA 154 (196)
T ss_dssp SSEEEEEE-SSSSTHHHHHHHHHHHHHHH--SSSEEEEEEEGGGGGHHHHHHHHHHHHS----ST---CEEEEESTTSSS
T ss_pred CCEEEEecCCcchhhHHHHHHHHHHhhhc--CCccceEEEecccChHHHHHHHHHhhcc----cC---ceEEEEeecCCC
Confidence 46999999994322 1222211 467889999998763 333333333222 11 245689999432
Q ss_pred CCCCChHHHHHHHHHcCCeEEEec
Q 028884 154 KREVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.........+.|+-.++
T Consensus 155 ----~~G~~l~~~~~~~~Pi~~it 174 (196)
T PF00448_consen 155 ----RLGALLSLAYESGLPISYIT 174 (196)
T ss_dssp ----TTHHHHHHHHHHTSEEEEEE
T ss_pred ----CcccceeHHHHhCCCeEEEE
Confidence 33456667777788866554
No 393
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.07 E-value=3.6e-05 Score=62.04 Aligned_cols=85 Identities=15% Similarity=0.097 Sum_probs=45.8
Q ss_pred EEEEEEeCCChhhhh-----hcccc-cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYA-----ALAPL-YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~-----~~~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
+.+.|+||+|..... .+... ..-..|-+++|+|+..+..-..+ ...+... -.+--+|+||.|....
T Consensus 183 ~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~---a~~F~~~---~~~~g~IlTKlD~~ar-- 254 (429)
T TIGR01425 183 FDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ---AKAFKDS---VDVGSVIITKLDGHAK-- 254 (429)
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH---HHHHHhc---cCCcEEEEECccCCCC--
Confidence 689999999954221 11111 12246889999998765222211 1222221 1246788999996432
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
.-.+.......+.|+..++
T Consensus 255 --gG~aLs~~~~t~~PI~fig 273 (429)
T TIGR01425 255 --GGGALSAVAATKSPIIFIG 273 (429)
T ss_pred --ccHHhhhHHHHCCCeEEEc
Confidence 2223444455566655543
No 394
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=5e-06 Score=68.24 Aligned_cols=122 Identities=14% Similarity=0.078 Sum_probs=79.9
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCC------------------CCCCccccceeEEEEEEEecCCcEEEEEEEe
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF------------------DPTSKVTVGASFLSQTIALQDSTTVKFEIWD 89 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D 89 (202)
.+....-+|.+.-+-.+||||+-++.+...- .......++.......+.+ . .+++.++|
T Consensus 34 ~~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w--~-~~~iNiID 110 (721)
T KOG0465|consen 34 IPLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW--R-DYRINIID 110 (721)
T ss_pred CchhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee--c-cceeEEec
Confidence 3334677888999999999999988765210 0011111222221112222 2 27899999
Q ss_pred CCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 90 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
|||+-.|....+..++.-|++++++|+..+-.-+...-| ++.+.-++|.+-++||.|......
T Consensus 111 TPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~----rQ~~ry~vP~i~FiNKmDRmGa~~ 173 (721)
T KOG0465|consen 111 TPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTETVW----RQMKRYNVPRICFINKMDRMGASP 173 (721)
T ss_pred CCCceeEEEEehhhhhhccCeEEEEEcccceehhhHHHH----HHHHhcCCCeEEEEehhhhcCCCh
Confidence 999999998899999999999999998876222222223 222334789999999999765443
No 395
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.05 E-value=3.3e-05 Score=57.99 Aligned_cols=65 Identities=22% Similarity=0.410 Sum_probs=41.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccce--eEEEEEEEec-CCcEEEEEEEeCCC
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA--SFLSQTIALQ-DSTTVKFEIWDTAG 92 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~i~D~~G 92 (202)
-.....++|+.+|.+|.|||||+++|++-.+.....+-.-. .....++... .+-.+.+.++||.|
T Consensus 37 v~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 37 VSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred HhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 34456899999999999999999999997764332211111 1111112111 23347789999999
No 396
>PRK00098 GTPase RsgA; Reviewed
Probab=98.04 E-value=1.3e-05 Score=61.98 Aligned_cols=25 Identities=36% Similarity=0.395 Sum_probs=21.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQF 58 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~ 58 (202)
..++++|.+|+|||||+|.|.+...
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~ 189 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLE 189 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcC
Confidence 3688999999999999999998643
No 397
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.02 E-value=1.4e-05 Score=61.61 Aligned_cols=59 Identities=24% Similarity=0.294 Sum_probs=36.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccc------cceeEEEEEEEecCCcEEEEEEEeCCChhhh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT------VGASFLSQTIALQDSTTVKFEIWDTAGQERY 96 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~ 96 (202)
-.++++|++|+|||||+|.|.+.......... ..+......+....+ ..++||||...+
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~----~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG----GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC----CEEEECCCCCcc
Confidence 47899999999999999999985432221111 111222223333222 258999998654
No 398
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.98 E-value=0.00017 Score=56.29 Aligned_cols=137 Identities=18% Similarity=0.061 Sum_probs=72.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCC-----------CCCCcc--ccceeEEEEEEEecCCc---------------------
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQF-----------DPTSKV--TVGASFLSQTIALQDST--------------------- 81 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~--~~~~~~~~~~~~~~~~~--------------------- 81 (202)
.+|-|--|+|||||+++++...- -..... ..-.......+.+.++.
T Consensus 4 tvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~~~ 83 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRRRD 83 (323)
T ss_pred EEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhccC
Confidence 56788999999999999997532 000001 00000111122222222
Q ss_pred EEEEEEEeCCChhhh----hh-cccccc---cCccEEEEEEeCCChhHHHH-H-HHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 82 TVKFEIWDTAGQERY----AA-LAPLYY---RGAAVAVVVYDITSPDSFNK-A-QYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 82 ~~~~~i~D~~G~~~~----~~-~~~~~~---~~~d~~i~v~d~~~~~s~~~-~-~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
.....++++.|...- .. .+...+ -..|+++-|+|+..-..... + ..+...+... =+|++||.|+
T Consensus 84 ~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~A------D~ivlNK~Dl 157 (323)
T COG0523 84 RPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFA------DVIVLNKTDL 157 (323)
T ss_pred CCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhC------cEEEEecccC
Confidence 145678888884321 11 111111 13588999999987533221 2 2222333322 3788999999
Q ss_pred CCCCCCChHHHHHHHHH--cCCeEEEeccCC
Q 028884 152 HEKREVPAQDGIEYAEK--NGMFFIETSAKT 180 (202)
Q Consensus 152 ~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~ 180 (202)
..... .+...+..+. ...+++.++...
T Consensus 158 v~~~~--l~~l~~~l~~lnp~A~i~~~~~~~ 186 (323)
T COG0523 158 VDAEE--LEALEARLRKLNPRARIIETSYGD 186 (323)
T ss_pred CCHHH--HHHHHHHHHHhCCCCeEEEccccC
Confidence 87654 3333444444 356678777633
No 399
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=2e-05 Score=61.94 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=90.7
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCC-------------------------------CCCCccccceeEEEEE
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQF-------------------------------DPTSKVTVGASFLSQT 74 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-------------------------------~~~~~~~~~~~~~~~~ 74 (202)
-+.+....++++|+|+..+||||+-..++...- ....+..-+.......
T Consensus 72 ~~~~pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~ 151 (501)
T KOG0459|consen 72 CGEYPKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAY 151 (501)
T ss_pred ccCCCCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEE
Confidence 344456789999999999999998765543200 0001111111111111
Q ss_pred EEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh---HHHHH---HHHHHHHHHcCCCCCeEEEEEeC
Q 028884 75 IALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFNKA---QYWVKELQKHGSPDIVMALVGNK 148 (202)
Q Consensus 75 ~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~---~~~~~~i~~~~~~~~p~ivv~nK 148 (202)
+ .-...++.+.|+||+..|-.....-...||+.++|+.+...+ .|+.- +.......... -...|+++||
T Consensus 152 F---Ete~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g--v~~lVv~vNK 226 (501)
T KOG0459|consen 152 F---ETENKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG--VKHLIVLINK 226 (501)
T ss_pred E---EecceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc--cceEEEEEEe
Confidence 1 222368999999999887765555666789999999986442 23322 22222222222 2447888999
Q ss_pred CCCCCC-CCC-Ch----HHHHHHHHH------cCCeEEEeccCCCCCHHHHH
Q 028884 149 ADLHEK-REV-PA----QDGIEYAEK------NGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 149 ~D~~~~-~~~-~~----~~~~~~~~~------~~~~~~~~s~~~~~~i~~~~ 188 (202)
+|-+.. +.. .. +....+.+. ....++++|..+|.++++..
T Consensus 227 MddPtvnWs~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~ 278 (501)
T KOG0459|consen 227 MDDPTVNWSNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT 278 (501)
T ss_pred ccCCccCcchhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence 996532 111 11 112222222 23459999999999988754
No 400
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.96 E-value=4e-05 Score=43.39 Aligned_cols=44 Identities=23% Similarity=0.180 Sum_probs=30.4
Q ss_pred CccEEEEEEeCCC--hhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028884 106 GAAVAVVVYDITS--PDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150 (202)
Q Consensus 106 ~~d~~i~v~d~~~--~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 150 (202)
-.++++|++|++. +.+.++....++.++..- .++|+++|+||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F-~~~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF-PNKPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT-TTS-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc-CCCCEEEEEeccC
Confidence 3589999999984 567788888888888762 3799999999998
No 401
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.96 E-value=7.5e-05 Score=61.50 Aligned_cols=135 Identities=14% Similarity=0.123 Sum_probs=70.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCC--------CCccccc-------------eeEEEEEEEe--------cCCc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP--------TSKVTVG-------------ASFLSQTIAL--------QDST 81 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~--------~~~~~~~-------------~~~~~~~~~~--------~~~~ 81 (202)
...-.|+|+|++|+||||++..|...-... ....+.. .......... ..-.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~ 427 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLR 427 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhc
Confidence 345678899999999999998876521000 0000000 0000000000 0011
Q ss_pred EEEEEEEeCCChhhhhhc-------ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 82 TVKFEIWDTAGQERYAAL-------APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 82 ~~~~~i~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
.+.+.|+||+|....... .... . ....++|++.+.. ...+...+..+... .+.-+|+||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~-~~a~lLVLpAtss--~~Dl~eii~~f~~~----~~~gvILTKlDEt~- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAA-R-QVTSLLVLPANAH--FSDLDEVVRRFAHA----KPQGVVLTKLDETG- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHh-h-cCCcEEEEECCCC--hhHHHHHHHHHHhh----CCeEEEEecCcCcc-
Confidence 267999999995432111 1111 1 2345677777653 33333444443332 34678899999532
Q ss_pred CCCChHHHHHHHHHcCCeEEEec
Q 028884 155 REVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~s 177 (202)
............+.++..++
T Consensus 499 ---~lG~aLsv~~~~~LPI~yvt 518 (559)
T PRK12727 499 ---RFGSALSVVVDHQMPITWVT 518 (559)
T ss_pred ---chhHHHHHHHHhCCCEEEEe
Confidence 33556666667777765554
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=7.5e-05 Score=59.41 Aligned_cols=85 Identities=9% Similarity=0.076 Sum_probs=46.9
Q ss_pred EEEEEEeCCChhhh-----hhccccc-ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERY-----AALAPLY-YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~-----~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
+.+.|+||+|.... ..+.... ....+.+++|+|++.. ...+...+..+... + .--+|+||.|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk--~~d~~~i~~~F~~~---~-idglI~TKLDET~--- 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI---H-IDGIVFTKFDETA--- 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccC--hHHHHHHHHHhcCC---C-CCEEEEEcccCCC---
Confidence 57999999995431 1121111 1124678888988643 22333333333322 1 2356789999543
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.+...+...++|+..++
T Consensus 392 -k~G~iLni~~~~~lPIsyit 411 (436)
T PRK11889 392 -SSGELLKIPAVSSAPIVLMT 411 (436)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23455666667777755543
No 403
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=5e-05 Score=67.78 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=64.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCc---cc-cceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccc-
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSK---VT-VGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPL- 102 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~- 102 (202)
-+|+|++|+||||++..-.- .++.... .. .......+.... .. +-.++||.|.- .-...|..
T Consensus 128 y~viG~pgsGKTtal~~sgl-~Fpl~~~~~~~~~~~~gT~~cdwwf--~d--eaVlIDtaGry~~q~s~~~~~~~~W~~f 202 (1188)
T COG3523 128 YMVIGPPGSGKTTALLNSGL-QFPLAEQMGALGLAGPGTRNCDWWF--TD--EAVLIDTAGRYITQDSADEVDRAEWLGF 202 (1188)
T ss_pred eEEecCCCCCcchHHhcccc-cCcchhhhccccccCCCCcccCccc--cc--ceEEEcCCcceecccCcchhhHHHHHHH
Confidence 47999999999999854322 2211110 00 000011111111 11 46788988821 11222322
Q ss_pred --------cccCccEEEEEEeCCCh-----hH----HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 103 --------YYRGAAVAVVVYDITSP-----DS----FNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 103 --------~~~~~d~~i~v~d~~~~-----~s----~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
-.+-.+++|+++|+.+- .. ...++.-+++++..-.-..|++|++||.|+...
T Consensus 203 L~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G 271 (1188)
T COG3523 203 LGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG 271 (1188)
T ss_pred HHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence 23457999999998642 11 223455566666665668999999999998763
No 404
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.84 E-value=9.9e-05 Score=51.14 Aligned_cols=57 Identities=23% Similarity=0.121 Sum_probs=35.8
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 150 (202)
+.+.++|++|.... ...++..+|-+|++....-.+....++- ..+.. .=++++||.|
T Consensus 92 ~D~iiIDtaG~~~~---~~~~~~~Ad~~ivv~tpe~~D~y~~~k~--~~~~~------~~~~~~~k~~ 148 (148)
T cd03114 92 FDVIIVETVGVGQS---EVDIASMADTTVVVMAPGAGDDIQAIKA--GIMEI------ADIVVVNKAD 148 (148)
T ss_pred CCEEEEECCccChh---hhhHHHhCCEEEEEECCCchhHHHHhhh--hHhhh------cCEEEEeCCC
Confidence 67999999996422 2347778998988888774433332221 11221 1478899987
No 405
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.83 E-value=0.00014 Score=51.68 Aligned_cols=82 Identities=15% Similarity=0.085 Sum_probs=44.0
Q ss_pred EEEEEEeCCChhhhh----hccccc--ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYA----ALAPLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~----~~~~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
..+.++|++|...+. .....+ ....|.+++|+|...... ...+...+..... ...+|.||.|.....
T Consensus 83 ~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~---~~~~~~~~~~~~~---~~~viltk~D~~~~~- 155 (173)
T cd03115 83 FDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQD---AVNQAKAFNEALG---ITGVILTKLDGDARG- 155 (173)
T ss_pred CCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChH---HHHHHHHHHhhCC---CCEEEEECCcCCCCc-
Confidence 468889999964221 111111 123799999999875432 2223333332222 256777999964422
Q ss_pred CChHHHHHHHHHcCCeEE
Q 028884 157 VPAQDGIEYAEKNGMFFI 174 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~ 174 (202)
......+...+.|+.
T Consensus 156 ---g~~~~~~~~~~~p~~ 170 (173)
T cd03115 156 ---GAALSIRAVTGKPIK 170 (173)
T ss_pred ---chhhhhHHHHCcCeE
Confidence 223335555565543
No 406
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=6.4e-05 Score=60.83 Aligned_cols=117 Identities=21% Similarity=0.211 Sum_probs=73.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC------------CCCCCccc--cceeEEEEEEEe---------------cCCc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ------------FDPTSKVT--VGASFLSQTIAL---------------QDST 81 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------~~~~~~~~--~~~~~~~~~~~~---------------~~~~ 81 (202)
.+.-++-|+.+...|||||-..|.... +....... .+..+....+.. .++.
T Consensus 17 ~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~ 96 (842)
T KOG0469|consen 17 KNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGN 96 (842)
T ss_pred cccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCc
Confidence 345678899999999999999887531 11111111 111111111111 1334
Q ss_pred EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 82 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
.+.+.++|.||+..|.+.....++..|++++|+|.-++--.+.-.-..+.+.. +-+| +++.||.|.
T Consensus 97 ~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~E---RIkP-vlv~NK~DR 162 (842)
T KOG0469|consen 97 GFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAE---RIKP-VLVMNKMDR 162 (842)
T ss_pred ceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHh---hccc-eEEeehhhH
Confidence 57899999999999999999999999999999998776333221111122222 2334 667999995
No 407
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.81 E-value=4.8e-05 Score=61.53 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=42.3
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
.......+.|.+||=|||||||+||.|.+.+.--.. .|..+.++.... +.. .+.+.|+||.
T Consensus 308 ~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~--ls~----~v~LCDCPGL 369 (562)
T KOG1424|consen 308 GERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIF--LSP----SVCLCDCPGL 369 (562)
T ss_pred CcCCCceeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEE--cCC----CceecCCCCc
Confidence 333444799999999999999999999998754333 344444443322 222 5789999995
No 408
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.76 E-value=0.00053 Score=53.60 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.+|.|--|+|||||||+++..
T Consensus 6 v~iltGFLGaGKTTll~~ll~~ 27 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 3568899999999999999864
No 409
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.74 E-value=0.00021 Score=46.27 Aligned_cols=82 Identities=13% Similarity=0.159 Sum_probs=48.7
Q ss_pred EEEEc-CCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 36 LVLLG-DSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 36 i~v~G-~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
|.|.| ..|+||||+...+...... ...+ ...+.. +..+.+.++|+|+..... ....+..+|.++++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~-~~~~-------vl~~d~--d~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~ 69 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKR-------VLLIDL--DPQYDYIIIDTPPSLGLL--TRNALAAADLVLIPV 69 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHh-CCCc-------EEEEeC--CCCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEec
Confidence 56666 6699999998776652211 1111 111111 111679999999864322 235677799999999
Q ss_pred eCCChhHHHHHHHHHH
Q 028884 115 DITSPDSFNKAQYWVK 130 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~ 130 (202)
+.+.. ++..+..+++
T Consensus 70 ~~~~~-s~~~~~~~~~ 84 (104)
T cd02042 70 QPSPL-DLDGLEKLLE 84 (104)
T ss_pred cCCHH-HHHHHHHHHH
Confidence 87643 4555555554
No 410
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.72 E-value=0.0011 Score=52.85 Aligned_cols=131 Identities=15% Similarity=0.146 Sum_probs=66.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeE--EEE------------------EEEe---------cCCcEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF--LSQ------------------TIAL---------QDSTTV 83 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~------------------~~~~---------~~~~~~ 83 (202)
.-.|+++|++|+||||-+-.|-............+.-. +++ .+.+ ..-...
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~ 282 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC 282 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence 55688999999999998877765432111111111100 000 0000 000124
Q ss_pred EEEEEeCCChhhhh----hcccccccC--ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC
Q 028884 84 KFEIWDTAGQERYA----ALAPLYYRG--AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV 157 (202)
Q Consensus 84 ~~~i~D~~G~~~~~----~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~ 157 (202)
++.++||.|...+. .....++.. ..-+.+|++++.. ...+...++.+..... --+++||.|-..
T Consensus 283 d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K--~~dlkei~~~f~~~~i----~~~I~TKlDET~---- 352 (407)
T COG1419 283 DVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTK--YEDLKEIIKQFSLFPI----DGLIFTKLDETT---- 352 (407)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcc--hHHHHHHHHHhccCCc----ceeEEEcccccC----
Confidence 78999999965432 222222222 3455667777765 3455555555443311 245679999322
Q ss_pred ChHHHHHHHHHcCCeE
Q 028884 158 PAQDGIEYAEKNGMFF 173 (202)
Q Consensus 158 ~~~~~~~~~~~~~~~~ 173 (202)
..-.......+.+.|+
T Consensus 353 s~G~~~s~~~e~~~PV 368 (407)
T COG1419 353 SLGNLFSLMYETRLPV 368 (407)
T ss_pred chhHHHHHHHHhCCCe
Confidence 3344455555555553
No 411
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.00017 Score=58.21 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=45.6
Q ss_pred EEEEEEeCCChhhh----hhcccccc--cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERY----AALAPLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~----~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
..+.++||+|.... ......+. ...+-.++|+|++.. ...+.+++..+... -.--+|+||.|-..
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~--~~~~~~~~~~f~~~----~~~~~I~TKlDEt~--- 340 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSS--GDTLDEVISAYQGH----GIHGCIITKVDEAA--- 340 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeeeCCC---
Confidence 46889999995431 11111111 123457788888854 22333333333221 12356789999533
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.+.......+.++..++
T Consensus 341 -~~G~~l~~~~~~~lPi~yvt 360 (420)
T PRK14721 341 -SLGIALDAVIRRKLVLHYVT 360 (420)
T ss_pred -CccHHHHHHHHhCCCEEEEE
Confidence 33455666667777755554
No 412
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.71 E-value=0.00049 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=22.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
...+++.|++|+|||+|++.+....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999998754
No 413
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.69 E-value=0.00037 Score=44.00 Aligned_cols=69 Identities=17% Similarity=0.270 Sum_probs=44.5
Q ss_pred EEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc-ccccccCccEEEEEE
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL-APLYYRGAAVAVVVY 114 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~ 114 (202)
+++.|..|+||||+...+.......... . .... .+.++|+++....... .......+|.+++++
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~--------v--~~~~-----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~ 66 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKR--------V--LLID-----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVT 66 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCe--------E--EEEC-----CEEEEeCCCCccchhhhhhhhhhhCCEEEEec
Confidence 6788999999999998877633211111 0 1111 6899999986432221 134566789999999
Q ss_pred eCCCh
Q 028884 115 DITSP 119 (202)
Q Consensus 115 d~~~~ 119 (202)
+....
T Consensus 67 ~~~~~ 71 (99)
T cd01983 67 TPEAL 71 (99)
T ss_pred CCchh
Confidence 88765
No 414
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.00031 Score=57.12 Aligned_cols=85 Identities=15% Similarity=0.066 Sum_probs=46.8
Q ss_pred EEEEEEeCCChhhhhhc-----c-cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYAAL-----A-PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~-----~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
..+.++||+|....... . ...+-.+|.+++|+|++... ........+.... + ..-+|+||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~av~~a~~F~~~l--~-i~gvIlTKlD~~a--- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QAKNQAKAFHEAV--G-IGGIIITKLDGTA--- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HHHHHHHHHHhcC--C-CCEEEEecccCCC---
Confidence 37899999995432211 1 11133478999999987752 1112222222211 1 2366789999532
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.+.......+.|+.+++
T Consensus 247 -~~G~~ls~~~~~~~Pi~fig 266 (437)
T PRK00771 247 -KGGGALSAVAETGAPIKFIG 266 (437)
T ss_pred -cccHHHHHHHHHCcCEEEEe
Confidence 12345556666677765554
No 415
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.66 E-value=0.00026 Score=48.51 Aligned_cols=106 Identities=22% Similarity=0.192 Sum_probs=60.4
Q ss_pred EEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeC
Q 028884 37 VLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDI 116 (202)
Q Consensus 37 ~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 116 (202)
+.-|..|+|||++--.+........ ....-.+.. ... ....+.+.++|+|+.. .......+..+|.++++.+.
T Consensus 4 ~~~~kgg~gkt~~~~~~a~~~~~~~-~~~~~vd~D---~~~-~~~~yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~ 76 (139)
T cd02038 4 VTSGKGGVGKTNISANLALALAKLG-KRVLLLDAD---LGL-ANLDYDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTP 76 (139)
T ss_pred EEcCCCCCcHHHHHHHHHHHHHHCC-CcEEEEECC---CCC-CCCCCCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCC
Confidence 3567889999998765544211000 000000000 000 0011679999998743 33334568889999999998
Q ss_pred CChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 117 TSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 117 ~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
+.. ++......++.+... ....++.+|+|+.+.
T Consensus 77 ~~~-s~~~~~~~l~~l~~~-~~~~~~~lVvN~~~~ 109 (139)
T cd02038 77 EPT-SITDAYALIKKLAKQ-LRVLNFRVVVNRAES 109 (139)
T ss_pred Chh-HHHHHHHHHHHHHHh-cCCCCEEEEEeCCCC
Confidence 744 345545555555443 234567899999973
No 416
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.65 E-value=6.5e-05 Score=58.98 Aligned_cols=66 Identities=20% Similarity=0.297 Sum_probs=46.0
Q ss_pred cCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 23 NAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 23 ~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
+...+......+++.|+|-|++||||+||+|.......... ..+.+..-..+.... .+.|+|.||.
T Consensus 242 ny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~-~pGvT~smqeV~Ldk----~i~llDsPgi 307 (435)
T KOG2484|consen 242 NYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGN-VPGVTRSMQEVKLDK----KIRLLDSPGI 307 (435)
T ss_pred CcccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCC-CccchhhhhheeccC----CceeccCCce
Confidence 34455556789999999999999999999999987755543 222222233333322 5889999994
No 417
>PRK10867 signal recognition particle protein; Provisional
Probab=97.64 E-value=8.4e-05 Score=60.21 Aligned_cols=85 Identities=15% Similarity=0.096 Sum_probs=46.1
Q ss_pred EEEEEEeCCChhhh-----hhc--ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 83 VKFEIWDTAGQERY-----AAL--APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 83 ~~~~i~D~~G~~~~-----~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
+.+.++||+|.... ..+ ....+ ..+.+++|+|+.... ........+.... +. .-+|+||.|....
T Consensus 184 ~DvVIIDTaGrl~~d~~lm~eL~~i~~~v-~p~evllVlda~~gq---~av~~a~~F~~~~--~i-~giIlTKlD~~~r- 255 (433)
T PRK10867 184 YDVVIVDTAGRLHIDEELMDELKAIKAAV-NPDEILLVVDAMTGQ---DAVNTAKAFNEAL--GL-TGVILTKLDGDAR- 255 (433)
T ss_pred CCEEEEeCCCCcccCHHHHHHHHHHHHhh-CCCeEEEEEecccHH---HHHHHHHHHHhhC--CC-CEEEEeCccCccc-
Confidence 57999999994321 111 11111 467789999987642 2222222233211 11 3566799995322
Q ss_pred CCChHHHHHHHHHcCCeEEEecc
Q 028884 156 EVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
.-.+.......+.|+.++..
T Consensus 256 ---gG~alsi~~~~~~PI~fig~ 275 (433)
T PRK10867 256 ---GGAALSIRAVTGKPIKFIGT 275 (433)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 22355666667777666543
No 418
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=97.61 E-value=0.00018 Score=54.92 Aligned_cols=60 Identities=18% Similarity=0.244 Sum_probs=37.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCC------CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD------PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~ 93 (202)
....++.|+|.||+|||||||.+...... ....+..+..... .+.+.+.. .+.+.||||.
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~-~iri~~rp--~vy~iDTPGi 206 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSE-RIRISHRP--PVYLIDTPGI 206 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehh-heEeccCC--ceEEecCCCc
Confidence 45789999999999999999988653221 1122222222211 23333333 5889999994
No 419
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.61 E-value=7.2e-05 Score=60.52 Aligned_cols=85 Identities=16% Similarity=0.101 Sum_probs=47.5
Q ss_pred EEEEEEeCCChhhh-----hhc--ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 83 VKFEIWDTAGQERY-----AAL--APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 83 ~~~~i~D~~G~~~~-----~~~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
+.+.++||+|.... ..+ ... .-..|.+++|+|+..+. ....+...+.... + ..-+|.||.|....
T Consensus 183 ~DvVIIDTaGr~~~d~~l~~eL~~i~~-~~~p~e~lLVvda~tgq---~~~~~a~~f~~~v--~-i~giIlTKlD~~~~- 254 (428)
T TIGR00959 183 FDVVIVDTAGRLQIDEELMEELAAIKE-ILNPDEILLVVDAMTGQ---DAVNTAKTFNERL--G-LTGVVLTKLDGDAR- 254 (428)
T ss_pred CCEEEEeCCCccccCHHHHHHHHHHHH-hhCCceEEEEEeccchH---HHHHHHHHHHhhC--C-CCEEEEeCccCccc-
Confidence 57999999994321 111 111 22468889999987652 2222333333221 1 14666899995322
Q ss_pred CCChHHHHHHHHHcCCeEEEecc
Q 028884 156 EVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
.-.+.......+.|+.++..
T Consensus 255 ---~G~~lsi~~~~~~PI~fi~~ 274 (428)
T TIGR00959 255 ---GGAALSVRSVTGKPIKFIGV 274 (428)
T ss_pred ---ccHHHHHHHHHCcCEEEEeC
Confidence 22366666677777666543
No 420
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.57 E-value=0.001 Score=49.01 Aligned_cols=62 Identities=27% Similarity=0.248 Sum_probs=40.6
Q ss_pred EEEEEeC-CChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 84 KFEIWDT-AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 84 ~~~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
.+.++|| .|.+.| -+...+++|.+|+|+|++.. ++....+.-+...... -+++.+|+||.|-
T Consensus 135 e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~~-sl~taeri~~L~~elg--~k~i~~V~NKv~e 197 (255)
T COG3640 135 EVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSYK-SLRTAERIKELAEELG--IKRIFVVLNKVDE 197 (255)
T ss_pred cEEEEecccchhhh---ccccccCCCEEEEEeCCcHH-HHHHHHHHHHHHHHhC--CceEEEEEeeccc
Confidence 5667776 344333 34456789999999999865 3444444444444432 3779999999993
No 421
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.56 E-value=0.00074 Score=43.97 Aligned_cols=100 Identities=14% Similarity=0.112 Sum_probs=58.2
Q ss_pred EcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC
Q 028884 39 LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS 118 (202)
Q Consensus 39 ~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 118 (202)
=+..|+||||+.-.|...-........ ..+..+....-.+.++|+|+... ......+..+|.++++.+.+.
T Consensus 6 ~~kgg~gkt~~~~~la~~~~~~~~~~~-------~l~d~d~~~~~D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~ 76 (106)
T cd03111 6 GAKGGVGATTLAANLAVALAKEAGRRV-------LLVDLDLQFGDDYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDL 76 (106)
T ss_pred CCCCCCcHHHHHHHHHHHHHhcCCCcE-------EEEECCCCCCCCEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCCh
Confidence 356789999988766542211100100 00111100111799999998543 233446678899999988765
Q ss_pred hhHHHHHHHHHHHHHHcCCC-CCeEEEEEeC
Q 028884 119 PDSFNKAQYWVKELQKHGSP-DIVMALVGNK 148 (202)
Q Consensus 119 ~~s~~~~~~~~~~i~~~~~~-~~p~ivv~nK 148 (202)
. +......+++.++....+ ...+.+|+|+
T Consensus 77 ~-s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 77 P-SIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred H-HHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 4 466667777777665443 4457777775
No 422
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.0014 Score=52.12 Aligned_cols=85 Identities=12% Similarity=0.093 Sum_probs=46.0
Q ss_pred EEEEEEeCCChhhhh----hccccccc--CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYA----ALAPLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~----~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
+.+.++||+|..... .....+.. ..+.+++|.++... ..++...+..+... -+--+|+||.|...
T Consensus 286 ~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d~~~i~~~f~~l----~i~glI~TKLDET~--- 356 (407)
T PRK12726 286 VDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SADVMTILPKLAEI----PIDGFIITKMDETT--- 356 (407)
T ss_pred CCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHHHHHHHHhcCcC----CCCEEEEEcccCCC---
Confidence 589999999963221 11111121 34666777776433 33333333332211 12466789999532
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.+...+...+.|+..++
T Consensus 357 -~~G~~Lsv~~~tglPIsylt 376 (407)
T PRK12726 357 -RIGDLYTVMQETNLPVLYMT 376 (407)
T ss_pred -CccHHHHHHHHHCCCEEEEe
Confidence 24456666677777765554
No 423
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.55 E-value=0.00029 Score=57.16 Aligned_cols=85 Identities=13% Similarity=0.094 Sum_probs=46.2
Q ss_pred EEEEEEeCCChhhhh----hccccccc---CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYA----ALAPLYYR---GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~----~~~~~~~~---~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
..+.++||+|..... .....++. ...-+++|++++.. ...+...+..+... + +--+|+||.|-..
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~--~~~l~~~~~~f~~~---~-~~~vI~TKlDet~-- 371 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTK--YEDLKDIYKHFSRL---P-LDGLIFTKLDETS-- 371 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCC--HHHHHHHHHHhCCC---C-CCEEEEecccccc--
Confidence 579999999953221 11112222 23466777888654 22333333333321 1 1357789999532
Q ss_pred CCChHHHHHHHHHcCCeEEEec
Q 028884 156 EVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~s 177 (202)
....+.......+.++..++
T Consensus 372 --~~G~i~~~~~~~~lPv~yit 391 (424)
T PRK05703 372 --SLGSILSLLIESGLPISYLT 391 (424)
T ss_pred --cccHHHHHHHHHCCCEEEEe
Confidence 23356666777777765554
No 424
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.52 E-value=0.00069 Score=51.94 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=62.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------------
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG---------------- 92 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G---------------- 92 (202)
+..+-.+++++|++|.|||+++++|..... ...+.. . ..+.+..+.+|.
T Consensus 57 ~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp-~~~d~~-~-------------~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 57 KRHRMPNLLIVGDSNNGKTMIIERFRRLHP-PQSDED-A-------------ERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred cccCCCceEEecCCCCcHHHHHHHHHHHCC-CCCCCC-C-------------ccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 344567899999999999999999997442 211111 0 012344444433
Q ss_pred --------hhhhhhcccccccCccEEEEEEeCCC---hhHHHHHHHHHHHHHHcC-CCCCeEEEEEeC
Q 028884 93 --------QERYAALAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHG-SPDIVMALVGNK 148 (202)
Q Consensus 93 --------~~~~~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK 148 (202)
...........++...+=++++|--. ..+....+.++..++..+ .-++|+|.||++
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~ 189 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTR 189 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccH
Confidence 11122233445666777788888432 133455566667666653 357889988865
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.52 E-value=0.0025 Score=51.36 Aligned_cols=94 Identities=17% Similarity=0.111 Sum_probs=48.7
Q ss_pred EEEEEEeCCChhhhh----hccccccc-----CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 83 VKFEIWDTAGQERYA----ALAPLYYR-----GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~----~~~~~~~~-----~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
..+.++||+|..... ..+..+++ ...-.++|+|++... ..+...+...... -+--+|+||.|-..
T Consensus 300 ~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~--~~~~~~~~~f~~~----~~~glIlTKLDEt~ 373 (432)
T PRK12724 300 SELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSY--HHTLTVLKAYESL----NYRRILLTKLDEAD 373 (432)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCH--HHHHHHHHHhcCC----CCCEEEEEcccCCC
Confidence 578999999954211 11111111 134678888988652 2333333333221 12456789999532
Q ss_pred CCCCChHHHHHHHHHcCCeEEEec--cCCCCCHHH
Q 028884 154 KREVPAQDGIEYAEKNGMFFIETS--AKTADNINQ 186 (202)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~s--~~~~~~i~~ 186 (202)
..-.+.......+.|+..++ ..-.+++..
T Consensus 374 ----~~G~il~i~~~~~lPI~ylt~GQ~VPeDi~~ 404 (432)
T PRK12724 374 ----FLGSFLELADTYSKSFTYLSVGQEVPFDILN 404 (432)
T ss_pred ----CccHHHHHHHHHCCCEEEEecCCCCCCCHHH
Confidence 23345556666677754443 333444443
No 426
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=97.46 E-value=0.0098 Score=41.84 Aligned_cols=141 Identities=9% Similarity=0.045 Sum_probs=95.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEe-CCChhhhhhcccccccCcc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWD-TAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D-~~G~~~~~~~~~~~~~~~d 108 (202)
-.+...|+++|..+.++..|.+.+...... ... +++.-- .|=..+ ....-...|
T Consensus 12 ~ln~atiLLVg~e~~~~~~LA~a~l~~~~~--------~~l-------------~Vh~a~sLPLp~e----~~~lRprID 66 (176)
T PF11111_consen 12 ELNTATILLVGTEEALLQQLAEAMLEEDKE--------FKL-------------KVHLAKSLPLPSE----NNNLRPRID 66 (176)
T ss_pred CcceeEEEEecccHHHHHHHHHHHHhhccc--------eeE-------------EEEEeccCCCccc----ccCCCceeE
Confidence 345789999999999999999999962211 111 111111 000000 111133479
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
.++|++|.....|+...+.-+..+....-.++ +.++.+.....+...+...+..+++..+.++++.+.-...++...+-
T Consensus 67 lIVFvinl~sk~SL~~ve~SL~~vd~~fflGK-VCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~~lA 145 (176)
T PF11111_consen 67 LIVFVINLHSKYSLQSVEASLSHVDPSFFLGK-VCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRTSLA 145 (176)
T ss_pred EEEEEEecCCcccHHHHHHHHhhCChhhhccc-eEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHHHHH
Confidence 99999999999999888776666543322244 44445555555667788999999999999999999988888887777
Q ss_pred HHHHHHcC
Q 028884 189 EEIAKRLP 196 (202)
Q Consensus 189 ~~l~~~i~ 196 (202)
+.|++.++
T Consensus 146 qRLL~~lq 153 (176)
T PF11111_consen 146 QRLLRMLQ 153 (176)
T ss_pred HHHHHHHH
Confidence 77776653
No 427
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.46 E-value=0.00012 Score=48.64 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.|+|.|++||||||+.+.|...
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999873
No 428
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.46 E-value=0.003 Score=51.99 Aligned_cols=22 Identities=27% Similarity=0.524 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
--++++|++|+||||++..|..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHH
Confidence 4588999999999999988875
No 429
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0014 Score=56.57 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=46.0
Q ss_pred EEEEEEeCCChhh----hhhccccc--ccCccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 83 VKFEIWDTAGQER----YAALAPLY--YRGAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 83 ~~~~i~D~~G~~~----~~~~~~~~--~~~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
..+.|+||+|... ........ ....+-+++|+|++.. +.+.++. +.+......+ +--+|+||.|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~---~~f~~~~~~~-i~glIlTKLDEt~-- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVV---HAYRHGAGED-VDGCIITKLDEAT-- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHH---HHHhhcccCC-CCEEEEeccCCCC--
Confidence 4789999999322 11111111 2234567888888753 3344332 2232211011 2356789999543
Q ss_pred CCChHHHHHHHHHcCCeEEEec
Q 028884 156 EVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.+.......+.++..++
T Consensus 338 --~~G~iL~i~~~~~lPI~yit 357 (767)
T PRK14723 338 --HLGPALDTVIRHRLPVHYVS 357 (767)
T ss_pred --CccHHHHHHHHHCCCeEEEe
Confidence 23445566666777755554
No 430
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0028 Score=50.81 Aligned_cols=84 Identities=8% Similarity=-0.066 Sum_probs=45.4
Q ss_pred EEEEEEeCCChhhhhh----cccccccC--cc-EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYAA----LAPLYYRG--AA-VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~----~~~~~~~~--~d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
+.+.++||+|...... ....++.. .+ -.++|+|++.. ...+...+...... -+--+|+||.|-..
T Consensus 255 ~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~--~~~~~~~~~~~~~~----~~~~~I~TKlDet~-- 326 (388)
T PRK12723 255 FDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTK--TSDVKEIFHQFSPF----SYKTVIFTKLDETT-- 326 (388)
T ss_pred CCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCC--HHHHHHHHHHhcCC----CCCEEEEEeccCCC--
Confidence 5799999999543211 11112221 13 57889998876 23333333333221 12456789999533
Q ss_pred CCChHHHHHHHHHcCCeEEEe
Q 028884 156 EVPAQDGIEYAEKNGMFFIET 176 (202)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~ 176 (202)
..-.+.......+.|+..+
T Consensus 327 --~~G~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 327 --CVGNLISLIYEMRKEVSYV 345 (388)
T ss_pred --cchHHHHHHHHHCCCEEEE
Confidence 2334555566666665444
No 431
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.43 E-value=0.0042 Score=47.38 Aligned_cols=85 Identities=9% Similarity=0.066 Sum_probs=47.7
Q ss_pred EEEEEEeCCChhhh-----hhccccc-ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERY-----AALAPLY-YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~-----~~~~~~~-~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
+.+.++||+|.... ..+.... .-..+-+++|+|++.. ...+..++..+... .+--+|+||.|...
T Consensus 155 ~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~--~~d~~~~~~~f~~~----~~~~~I~TKlDet~--- 225 (270)
T PRK06731 155 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMK--SKDMIEIITNFKDI----HIDGIVFTKFDETA--- 225 (270)
T ss_pred CCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccC--HHHHHHHHHHhCCC----CCCEEEEEeecCCC---
Confidence 68999999995421 1221111 1134678999998753 22333333333321 22467789999543
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
..-.+...+...+.|+..++
T Consensus 226 -~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 226 -SSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred -CccHHHHHHHHHCcCEEEEe
Confidence 23345566666777755554
No 432
>PRK08118 topology modulation protein; Reviewed
Probab=97.41 E-value=0.00015 Score=51.28 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+|+|+|++|||||||...|...
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~ 24 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEK 24 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998864
No 433
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.41 E-value=0.00015 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.687 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+|+|+|+||+||||+..+|...
T Consensus 1 ~riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 37999999999999999999875
No 434
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.40 E-value=0.0002 Score=41.55 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..+|.|+.|+|||||++.+..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999988753
No 435
>PRK07261 topology modulation protein; Provisional
Probab=97.39 E-value=0.00017 Score=51.31 Aligned_cols=22 Identities=32% Similarity=0.596 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+|+|+|.+|+|||||.+.|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 7999999999999999998753
No 436
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.38 E-value=0.00015 Score=49.68 Aligned_cols=20 Identities=35% Similarity=0.702 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 028884 36 LVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~ 55 (202)
|+++|+||||||||++.|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999985
No 437
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.36 E-value=0.0028 Score=50.12 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+|.|--|+|||||+++++..
T Consensus 7 ~iltGFLGaGKTTll~~ll~~ 27 (341)
T TIGR02475 7 TIVTGFLGAGKTTLIRHLLQN 27 (341)
T ss_pred EEEEECCCCCHHHHHHHHHhc
Confidence 578899999999999999864
No 438
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.00011 Score=57.59 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=27.4
Q ss_pred EEEEEEeCCChhh-----hhhcc--cccccCccEEEEEEeCCChhHHHHH
Q 028884 83 VKFEIWDTAGQER-----YAALA--PLYYRGAAVAVVVYDITSPDSFNKA 125 (202)
Q Consensus 83 ~~~~i~D~~G~~~-----~~~~~--~~~~~~~d~~i~v~d~~~~~s~~~~ 125 (202)
+++.|+||+|.-. |..+. ...+ ..|-+|+|.|++-+..-+..
T Consensus 184 fdvIIvDTSGRh~qe~sLfeEM~~v~~ai-~Pd~vi~VmDasiGQaae~Q 232 (483)
T KOG0780|consen 184 FDVIIVDTSGRHKQEASLFEEMKQVSKAI-KPDEIIFVMDASIGQAAEAQ 232 (483)
T ss_pred CcEEEEeCCCchhhhHHHHHHHHHHHhhc-CCCeEEEEEeccccHhHHHH
Confidence 7899999999432 12111 1122 37999999999987554443
No 439
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.31 E-value=0.00027 Score=51.13 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-++|+|+.||||||+++.+..
T Consensus 4 ya~lV~GpAgSGKSTyC~~~~~ 25 (273)
T KOG1534|consen 4 YAQLVMGPAGSGKSTYCSSMYE 25 (273)
T ss_pred eeEEEEccCCCCcchHHHHHHH
Confidence 4578999999999999988864
No 440
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.31 E-value=0.0028 Score=45.24 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.+.=.++++|+.|+|||||++-+.+-.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 344578999999999999999988743
No 441
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.27 E-value=0.0064 Score=43.13 Aligned_cols=84 Identities=14% Similarity=0.022 Sum_probs=49.7
Q ss_pred EEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHH
Q 028884 84 KFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI 163 (202)
Q Consensus 84 ~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 163 (202)
.+.++|+|+.... .....+..+|.+|++++.+.. ++..+..+++.+.... .....+|+|+.+..... ..+...
T Consensus 64 d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~-s~~~~~~~~~~~~~~~--~~~~~iv~N~~~~~~~~--~~~~~~ 136 (179)
T cd02036 64 DYILIDSPAGIER--GFITAIAPADEALLVTTPEIS-SLRDADRVKGLLEALG--IKVVGVIVNRVRPDMVE--GGDMVE 136 (179)
T ss_pred CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcc-hHHHHHHHHHHHHHcC--CceEEEEEeCCcccccc--hhhHHH
Confidence 6999999875432 233446789999999988754 3455555555555431 23467889999853221 112123
Q ss_pred HHHHHcCCeEE
Q 028884 164 EYAEKNGMFFI 174 (202)
Q Consensus 164 ~~~~~~~~~~~ 174 (202)
.+.+..+.+++
T Consensus 137 ~~~~~~~~~v~ 147 (179)
T cd02036 137 DIEEILGVPLL 147 (179)
T ss_pred HHHHHhCCCEE
Confidence 34444555543
No 442
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.27 E-value=0.0041 Score=51.83 Aligned_cols=86 Identities=8% Similarity=0.060 Sum_probs=45.5
Q ss_pred cEEEEEEeCCChhHH--HHHHHHHHHHHHcCCCCC-eEEEEEeCCCCCCCCCC--------ChHHHHHHHHHcCCeEEEe
Q 028884 108 AVAVVVYDITSPDSF--NKAQYWVKELQKHGSPDI-VMALVGNKADLHEKREV--------PAQDGIEYAEKNGMFFIET 176 (202)
Q Consensus 108 d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~-p~ivv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 176 (202)
--+|+|=|.-+-..- ..+...+...... ... |+|+|++-+|....... .......+....++..+.+
T Consensus 133 ~kvILVEDlPN~~~~~~~~f~~~L~~~l~~--~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~F 210 (519)
T PF03215_consen 133 KKVILVEDLPNVFHRDTSRFREALRQYLRS--SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKF 210 (519)
T ss_pred ceEEEeeccccccchhHHHHHHHHHHHHHc--CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEe
Confidence 345666566542111 3333333332222 234 99999996653221110 0111234445567778888
Q ss_pred ccCCCCCHHHHHHHHHHHc
Q 028884 177 SAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i 195 (202)
.+....-+...+..|+..-
T Consensus 211 NpIa~T~mkKaL~rI~~~E 229 (519)
T PF03215_consen 211 NPIAPTFMKKALKRILKKE 229 (519)
T ss_pred cCCCHHHHHHHHHHHHHHH
Confidence 8887777777777776643
No 443
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0028 Score=51.12 Aligned_cols=26 Identities=23% Similarity=0.584 Sum_probs=22.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+-.-+|+|+|+.|+|||||+.-|++.
T Consensus 611 DmdSRiaIVGPNGVGKSTlLkLL~Gk 636 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVGKSTLLKLLIGK 636 (807)
T ss_pred cccceeEEECCCCccHHHHHHHHhcC
Confidence 34568999999999999999988874
No 444
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.24 E-value=0.00021 Score=50.28 Aligned_cols=22 Identities=18% Similarity=0.481 Sum_probs=17.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
||+|.|.+++|||||++.|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 7999999999999999999874
No 445
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.24 E-value=0.00015 Score=57.07 Aligned_cols=59 Identities=19% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
....+|.|.++|=|++||||+||+|-..+..........+.. ...+.+.. ++.++|+||
T Consensus 303 ~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV-WQYItLmk----rIfLIDcPG 361 (572)
T KOG2423|consen 303 SDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV-WQYITLMK----RIFLIDCPG 361 (572)
T ss_pred cCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchH-HHHHHHHh----ceeEecCCC
No 446
>PRK04195 replication factor C large subunit; Provisional
Probab=97.22 E-value=0.0053 Score=50.95 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.+++.|++|+||||+++.+...
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999874
No 447
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.20 E-value=0.0049 Score=50.85 Aligned_cols=88 Identities=6% Similarity=-0.020 Sum_probs=46.1
Q ss_pred EEEEEEeCCChh---HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHH
Q 028884 109 VAVVVYDITSPD---SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (202)
Q Consensus 109 ~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 185 (202)
.+|+|=|+-+-. ..+.++..+..+-. ....|+|++++-+-..............+....++..+..+.....-++
T Consensus 196 ~liLveDLPn~~~~d~~~~f~evL~~y~s--~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MK 273 (634)
T KOG1970|consen 196 KLILVEDLPNQFYRDDSETFREVLRLYVS--IGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMK 273 (634)
T ss_pred eEEEeeccchhhhhhhHHHHHHHHHHHHh--cCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHH
Confidence 457777765532 23333444443333 3468899999877653322222222223334556666666655555566
Q ss_pred HHHHHHHHHcCCC
Q 028884 186 QLFEEIAKRLPRP 198 (202)
Q Consensus 186 ~~~~~l~~~i~~~ 198 (202)
.++..|+.....+
T Consensus 274 K~L~ric~~e~~~ 286 (634)
T KOG1970|consen 274 KFLKRICRIEANK 286 (634)
T ss_pred HHHHHHHHHhccc
Confidence 6666665554443
No 448
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.20 E-value=0.00043 Score=41.30 Aligned_cols=21 Identities=29% Similarity=0.567 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
|.+.|.+|+||||+.+.|...
T Consensus 2 i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 688999999999999998874
No 449
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.19 E-value=0.0013 Score=46.24 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.+.=.++++|+.|+|||||++.+.+..
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578899999999999999988743
No 450
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0024 Score=54.99 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=53.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCC---Chhhhhhcccccc---cCcc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTA---GQERYAALAPLYY---RGAA 108 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~---G~~~~~~~~~~~~---~~~d 108 (202)
-++|.|++|+||||+.+.|.................+.....+.++....+..+|.. |.+..+.+..... ....
T Consensus 40 AyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr 119 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDAR 119 (830)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCC
Confidence 358999999999999987776443222111111111111111222222334444432 3333333332211 1234
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
.-||++|--+.-+-.....+++.++.- ..+..+|++.|....
T Consensus 120 ~KVIIIDEah~LT~~A~NALLKtLEEP-P~~v~FILaTtd~~K 161 (830)
T PRK07003 120 FKVYMIDEVHMLTNHAFNAMLKTLEEP-PPHVKFILATTDPQK 161 (830)
T ss_pred ceEEEEeChhhCCHHHHHHHHHHHHhc-CCCeEEEEEECChhh
Confidence 556777765543322333334434332 235667777766554
No 451
>PLN02200 adenylate kinase family protein
Probab=97.17 E-value=0.00077 Score=50.38 Aligned_cols=35 Identities=31% Similarity=0.445 Sum_probs=26.5
Q ss_pred cccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 21 LENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 21 ~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+.............|+|+|.|||||||+..+|..
T Consensus 31 ~~~~~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~ 65 (234)
T PLN02200 31 LEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIVE 65 (234)
T ss_pred cccccCCccCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 33444444455568899999999999999988875
No 452
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.15 E-value=0.0021 Score=50.26 Aligned_cols=25 Identities=24% Similarity=0.508 Sum_probs=22.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
..+|+|.|.+|||||||++.|+...
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998743
No 453
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.15 E-value=0.0036 Score=44.63 Aligned_cols=84 Identities=21% Similarity=0.247 Sum_probs=57.1
Q ss_pred EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHH
Q 028884 82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161 (202)
Q Consensus 82 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 161 (202)
.+.+.++|+|+.... .....+..+|.+++++..+.. +...+..+++.+... +.|+.+|+||.|.... ...+
T Consensus 92 ~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~-~~~~~~~~~~~l~~~---~~~~~vV~N~~~~~~~---~~~~ 162 (179)
T cd03110 92 GAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPS-GLHDLERAVELVRHF---GIPVGVVINKYDLNDE---IAEE 162 (179)
T ss_pred CCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcc-cHHHHHHHHHHHHHc---CCCEEEEEeCCCCCcc---hHHH
Confidence 368999999964322 233456789999999998854 455666666666544 4568899999995332 3455
Q ss_pred HHHHHHHcCCeEE
Q 028884 162 GIEYAEKNGMFFI 174 (202)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (202)
..+++...+.+++
T Consensus 163 ~~~~~~~~~~~vl 175 (179)
T cd03110 163 IEDYCEEEGIPIL 175 (179)
T ss_pred HHHHHHHcCCCeE
Confidence 6677777777654
No 454
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.15 E-value=0.0064 Score=41.86 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.=.++|+|+.|+|||||++.+.+..
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3467899999999999999998743
No 455
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.14 E-value=0.00039 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++|+|+.|+|||||++.+.+.
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEEccCCCccccceeeeccc
Confidence 36889999999999999988874
No 456
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.12 E-value=0.00041 Score=51.49 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-|+++|++|||||||++-+.+-
T Consensus 31 fvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 31 FVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999988774
No 457
>PRK01889 GTPase RsgA; Reviewed
Probab=97.11 E-value=0.00067 Score=53.90 Aligned_cols=24 Identities=42% Similarity=0.631 Sum_probs=21.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-.++++|.+|+|||||+|.+.+..
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~ 219 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEE 219 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhc
Confidence 478999999999999999999754
No 458
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.10 E-value=0.00052 Score=46.11 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
|++.|++|+|||++++.+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 689999999999999999874
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.07 E-value=0.00062 Score=45.81 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=22.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQF 58 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~ 58 (202)
-.++++|++|+|||+++..+.....
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~ 27 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG 27 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC
Confidence 4789999999999999999987554
No 460
>PRK14738 gmk guanylate kinase; Provisional
Probab=97.06 E-value=0.001 Score=48.79 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=21.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+..-|+|+|++|||||||++.|...
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 34566889999999999999999754
No 461
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.04 E-value=0.00053 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.378 Sum_probs=19.0
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
|+|.|.+||||||+++.|...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999988764
No 462
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.04 E-value=0.00057 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-++|+|+.|||||||+|-+.+-.
T Consensus 33 ~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 33 FVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred EEEEECCCCCCHHHHHHHHhccc
Confidence 58899999999999999887733
No 463
>PRK06217 hypothetical protein; Validated
Probab=97.03 E-value=0.00066 Score=48.74 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+|+|+|.+|||||||...|...
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 464
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.02 E-value=0.0062 Score=40.67 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=33.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCC--CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQF--DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
.--|++-|+-|+|||||++.+...-- .....|+......+.. .+..-+.+-++-..+.++..
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~---~~~~l~H~DLYRl~~~~e~~ 78 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEG---GNIPLYHFDLYRLEDPEELE 78 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEE---TTEEEEEEE-TT-SSTHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecC---CCceEEEeeccccCCHHHHH
Confidence 34588999999999999998887432 2344555555433322 23233445555555555443
No 465
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.02 E-value=0.0016 Score=46.25 Aligned_cols=44 Identities=23% Similarity=0.174 Sum_probs=28.2
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
|++++|+|+.++.+-.. ..+.+.+. ....++|+++|+||+|+.+
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~~~~kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVL-QAGGNKKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHH-hccCCCCEEEEEehhhcCC
Confidence 78999999988732211 12222221 2133689999999999864
No 466
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.01 E-value=0.00068 Score=46.31 Aligned_cols=21 Identities=48% Similarity=0.767 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
|+|+|++|+|||||++.|...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 689999999999999999874
No 467
>PRK14530 adenylate kinase; Provisional
Probab=97.00 E-value=0.00071 Score=49.89 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+|+|+|+|||||||+.+.|..
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998864
No 468
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.99 E-value=0.0049 Score=48.69 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=23.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
...+|+|.|++|||||||++.|++.-
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i 186 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAI 186 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHccc
Confidence 45789999999999999999998743
No 469
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.99 E-value=0.0006 Score=46.64 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=22.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
....+|+|.|-||+|||||..++..
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae 29 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAE 29 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHH
Confidence 4578999999999999999999874
No 470
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.99 E-value=0.00093 Score=48.95 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=22.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
++..-|+|.|++|||||||++.+.+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44577899999999999999999863
No 471
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.99 E-value=0.0037 Score=48.50 Aligned_cols=25 Identities=20% Similarity=0.496 Sum_probs=22.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...+|+|.|++|+|||||++.+...
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~ 155 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAE 155 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 472
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.98 E-value=0.00072 Score=50.45 Aligned_cols=97 Identities=15% Similarity=0.272 Sum_probs=60.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC----
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG---- 106 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~---- 106 (202)
..+..|++.|..+. |++|++.+.... ....++...++++....-.++.+-...+|+.+|......+...-+..
T Consensus 43 ~~E~~I~~~Gn~~~--tt~I~~~FdR~e-~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~ 119 (363)
T KOG3929|consen 43 KFEFFIGSKGNGGK--TTIILRCFDRDE-PPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLR 119 (363)
T ss_pred cceeEEEEecCCce--eEeehhhcCccc-CCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchh
Confidence 45788999998765 999999987653 33455555556554443333333345799999866555444433332
Q ss_pred ccEEEEEEeCCChhHH-HHHHHHHH
Q 028884 107 AAVAVVVYDITSPDSF-NKAQYWVK 130 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~-~~~~~~~~ 130 (202)
.=.+|++.|+++++.+ ..+...+.
T Consensus 120 ~~slIL~LDls~p~~~W~t~E~~~~ 144 (363)
T KOG3929|consen 120 TFSLILVLDLSKPNDLWPTMENLLQ 144 (363)
T ss_pred hhhheeeeecCChHHHHHHHHHHHH
Confidence 1257899999998654 34444444
No 473
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.97 E-value=0.00079 Score=50.23 Aligned_cols=27 Identities=22% Similarity=0.442 Sum_probs=23.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
....++++|+|.+|||||+|+..++..
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~ 36 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYY 36 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHh
Confidence 345689999999999999999998864
No 474
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.97 E-value=0.0053 Score=41.60 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=21.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.--|++.|+.|+|||||++.+....
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3468899999999999999998753
No 475
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.96 E-value=0.00068 Score=54.18 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=20.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHH
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~ 54 (202)
..++..|+++|..|+||||.+-.|.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA 121 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLA 121 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHH
Confidence 3457889999999999999886554
No 476
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.95 E-value=0.00083 Score=45.83 Aligned_cols=22 Identities=23% Similarity=0.466 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.|+++|++|+|||+|++.+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~ 22 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAAL 22 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988763
No 477
>PRK03839 putative kinase; Provisional
Probab=96.95 E-value=0.00085 Score=47.99 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+|+|+|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6999999999999999988763
No 478
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0011 Score=48.36 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
=.++++|+.|||||||++.+-+-+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~LE 52 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGLE 52 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCc
Confidence 458899999999999999988744
No 479
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.94 E-value=0.00089 Score=48.23 Aligned_cols=24 Identities=21% Similarity=0.455 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.++|+|++|+|||||++.+.+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~ 48 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 457999999999999999999874
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.93 E-value=0.00087 Score=48.25 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.|+|+|++|+|||||++.|.+.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999764
No 481
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.93 E-value=0.00094 Score=45.81 Aligned_cols=23 Identities=13% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.|.|+|..++|||||++.|+...
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998743
No 482
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.93 E-value=0.00086 Score=47.88 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++|+|++|||||||++.|...
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998764
No 483
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.92 E-value=0.0071 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-+++.|++|+||||+++.|....
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999887643
No 484
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.92 E-value=0.011 Score=45.52 Aligned_cols=20 Identities=30% Similarity=0.419 Sum_probs=18.5
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 028884 35 KLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~ 54 (202)
-|+|.|.+||||||+++.|-
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 58899999999999999994
No 485
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.91 E-value=0.00081 Score=50.61 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.=-++++|+.|||||||++.+.+
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g 50 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAG 50 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34578999999999999999987
No 486
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.91 E-value=0.005 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~ 57 (202)
|+|.|++||||||+++.+....
T Consensus 4 ilI~GptGSGKTTll~~ll~~~ 25 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYI 25 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999887744
No 487
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.91 E-value=0.0056 Score=53.77 Aligned_cols=116 Identities=11% Similarity=0.102 Sum_probs=54.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEE--EEecCCcEEEEEEEeCC---Chhhhhhcccccc---cC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT--IALQDSTTVKFEIWDTA---GQERYAALAPLYY---RG 106 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~---G~~~~~~~~~~~~---~~ 106 (202)
-++|.|++|+||||+...|.................+... +...+.....+..+|.. |.+..+.+..... ..
T Consensus 39 a~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~ 118 (824)
T PRK07764 39 AYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAE 118 (824)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhc
Confidence 3789999999999999888765443221100011111111 11111122344455542 3333333322111 12
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCC
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADL 151 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~ 151 (202)
...-||++|--+..+-.....+++.|..- ..++-+|++.|+.|.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEp-P~~~~fIl~tt~~~k 162 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEP-PEHLKFIFATTEPDK 162 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCC-CCCeEEEEEeCChhh
Confidence 45567778766654444444444445432 223434555555553
No 488
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.91 E-value=0.0012 Score=48.47 Aligned_cols=25 Identities=20% Similarity=0.332 Sum_probs=22.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+...|.|.|++|||||||++.|...
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998864
No 489
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.91 E-value=0.00086 Score=48.12 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-|+|+|.+||||||+++.+..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999999874
No 490
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=96.89 E-value=0.0078 Score=44.53 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=61.6
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCCh--hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ 160 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 160 (202)
+.+.|+|+.|... .+....+..+|.+|+=.-.+.- +.-....+|+..+.+...+++|.-|+.|+...... .....
T Consensus 84 ~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~~~~-~~~~~ 160 (231)
T PF07015_consen 84 FDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPAARL-TRAQR 160 (231)
T ss_pred CCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCcchh-hHHHH
Confidence 5789999988542 2234445568999987777643 33334455666666656788999999999973311 11111
Q ss_pred HHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 161 DGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
....+.. +++++.+...+..-+.++|.
T Consensus 161 ~~~e~~~--~lpvl~t~l~eR~Af~~m~~ 187 (231)
T PF07015_consen 161 IISEQLE--SLPVLDTELHERDAFRAMFS 187 (231)
T ss_pred HHHHHHh--cCCccccccccHHHHHHHHH
Confidence 2222222 47777777666554444444
No 491
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.89 E-value=0.0038 Score=44.37 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.=.++++|+.|+|||||++.+.+..
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3468899999999999999998743
No 492
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.88 E-value=0.0014 Score=47.23 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.=|+|+|++|+|||||+++|...
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 45889999999999999999874
No 493
>PRK14532 adenylate kinase; Provisional
Probab=96.88 E-value=0.00092 Score=48.13 Aligned_cols=21 Identities=33% Similarity=0.589 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
+|+++|+|||||||+..+|..
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~ 22 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVE 22 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999875
No 494
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.88 E-value=0.00095 Score=47.65 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-|+|+|++|+|||||++.|...
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHcc
Confidence 4789999999999999999874
No 495
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.87 E-value=0.005 Score=48.20 Aligned_cols=25 Identities=20% Similarity=0.510 Sum_probs=22.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...+|+|.|.+|+|||||++.|...
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHh
Confidence 4578999999999999999999974
No 496
>PRK13949 shikimate kinase; Provisional
Probab=96.85 E-value=0.0012 Score=46.87 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+|+|+|.+|+||||+.+.|...
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999988753
No 497
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.85 E-value=0.0011 Score=43.08 Aligned_cols=22 Identities=36% Similarity=0.818 Sum_probs=19.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHH
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~ 54 (202)
.-.++++|++|+|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3468999999999999999875
No 498
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0034 Score=55.06 Aligned_cols=26 Identities=27% Similarity=0.461 Sum_probs=21.2
Q ss_pred ee-EEEEcCCCCcHHHHHHHHHhCCCC
Q 028884 34 VK-LVLLGDSGVGKSCIVLRFVRGQFD 59 (202)
Q Consensus 34 ~~-i~v~G~~~~GKSsli~~l~~~~~~ 59 (202)
.+ ++|.|++|+||||+++.|......
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 44 489999999999999998875543
No 499
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.84 E-value=0.0059 Score=48.09 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
...+|+|.|.+|||||||++.|+..-
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 36799999999999999999998743
No 500
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.82 E-value=0.0015 Score=50.58 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=48.5
Q ss_pred EEEEEEeCCChhh--------h---hhccccccc-CccEEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028884 83 VKFEIWDTAGQER--------Y---AALAPLYYR-GAAVAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (202)
Q Consensus 83 ~~~~i~D~~G~~~--------~---~~~~~~~~~-~~d~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 149 (202)
+.+.++||.|+-. . ......... ..+=+++++|+.-+ +.+.+.+.|-+.+. + --+++||.
T Consensus 222 ~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~------l-~GiIlTKl 294 (340)
T COG0552 222 IDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVG------L-DGIILTKL 294 (340)
T ss_pred CCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHHHHHHHHHHhcC------C-ceEEEEec
Confidence 6899999999321 1 112222222 23447888899876 45566555533332 1 35678999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCeEEEec
Q 028884 150 DLHEKREVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~s 177 (202)
|....- -.....+..+++|+.++-
T Consensus 295 DgtAKG----G~il~I~~~l~~PI~fiG 318 (340)
T COG0552 295 DGTAKG----GIILSIAYELGIPIKFIG 318 (340)
T ss_pred ccCCCc----ceeeeHHHHhCCCEEEEe
Confidence 954321 123445667788877764
Done!