Query 028884
Match_columns 202
No_of_seqs 114 out of 1873
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 06:04:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028884.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028884hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 5.4E-39 1.9E-43 235.5 18.4 167 31-198 11-177 (216)
2 2efe_B Small GTP-binding prote 100.0 7.2E-34 2.5E-38 202.7 22.4 170 30-200 9-178 (181)
3 1z0f_A RAB14, member RAS oncog 100.0 3.2E-34 1.1E-38 204.0 20.1 168 29-197 11-178 (179)
4 2hup_A RAS-related protein RAB 100.0 9.6E-35 3.3E-39 211.2 17.3 171 28-199 24-195 (201)
5 2a5j_A RAS-related protein RAB 100.0 7E-34 2.4E-38 204.9 20.8 169 28-197 16-184 (191)
6 2gf9_A RAS-related protein RAB 100.0 7.9E-34 2.7E-38 204.3 21.0 167 30-197 19-185 (189)
7 1r2q_A RAS-related protein RAB 100.0 1.1E-33 3.9E-38 199.5 20.5 166 31-197 4-169 (170)
8 3dz8_A RAS-related protein RAB 100.0 4.5E-35 1.5E-39 211.1 13.2 170 30-200 20-189 (191)
9 1z08_A RAS-related protein RAB 100.0 7.3E-34 2.5E-38 200.7 19.1 167 30-197 3-169 (170)
10 3tkl_A RAS-related protein RAB 100.0 9.9E-34 3.4E-38 204.6 19.9 168 30-198 13-180 (196)
11 1z0j_A RAB-22, RAS-related pro 100.0 2.5E-33 8.6E-38 197.8 21.4 166 31-197 4-169 (170)
12 1ek0_A Protein (GTP-binding pr 100.0 1.6E-33 5.3E-38 198.8 20.3 166 32-198 2-170 (170)
13 2fu5_C RAS-related protein RAB 100.0 6.6E-34 2.3E-38 203.4 18.5 166 31-197 6-171 (183)
14 3kkq_A RAS-related protein M-R 100.0 9E-34 3.1E-38 202.7 19.0 169 27-197 12-182 (183)
15 2g6b_A RAS-related protein RAB 100.0 2.5E-33 8.5E-38 199.8 21.1 172 28-200 5-177 (180)
16 2ew1_A RAS-related protein RAB 100.0 1.3E-33 4.5E-38 205.2 19.9 168 29-197 22-189 (201)
17 2fg5_A RAB-22B, RAS-related pr 100.0 1.6E-33 5.5E-38 203.2 19.9 170 30-200 20-189 (192)
18 3cpj_B GTP-binding protein YPT 100.0 1.5E-33 5.2E-38 207.9 20.0 170 29-199 9-178 (223)
19 2bme_A RAB4A, RAS-related prot 100.0 2.7E-33 9.3E-38 200.6 20.3 167 30-197 7-173 (186)
20 2bcg_Y Protein YP2, GTP-bindin 100.0 6.8E-33 2.3E-37 201.9 22.4 167 30-197 5-171 (206)
21 2oil_A CATX-8, RAS-related pro 100.0 1.9E-33 6.5E-38 202.8 19.2 169 28-197 20-188 (193)
22 3tw8_B RAS-related protein RAB 100.0 4E-33 1.4E-37 198.7 20.2 167 29-197 5-171 (181)
23 1g16_A RAS-related protein SEC 100.0 2.1E-33 7.1E-38 198.2 18.5 166 32-199 2-167 (170)
24 2hxs_A RAB-26, RAS-related pro 100.0 9.4E-34 3.2E-38 201.6 16.8 171 31-201 4-177 (178)
25 3t5g_A GTP-binding protein RHE 100.0 2.7E-33 9.2E-38 199.9 18.9 168 31-200 4-172 (181)
26 2o52_A RAS-related protein RAB 100.0 2.2E-33 7.6E-38 203.8 18.4 167 30-197 22-188 (200)
27 1zbd_A Rabphilin-3A; G protein 100.0 8.7E-33 3E-37 200.9 21.4 166 30-196 5-170 (203)
28 2p5s_A RAS and EF-hand domain 100.0 1.1E-33 3.6E-38 205.2 16.5 169 29-198 24-198 (199)
29 3l0i_B RAS-related protein RAB 100.0 8.8E-36 3E-40 216.2 4.8 197 1-198 1-197 (199)
30 2f7s_A C25KG, RAS-related prot 100.0 2.1E-33 7.2E-38 206.2 17.4 168 30-197 22-199 (217)
31 3oes_A GTPase rhebl1; small GT 100.0 1.4E-33 4.8E-38 204.9 16.3 172 26-199 17-189 (201)
32 2il1_A RAB12; G-protein, GDP, 100.0 1.1E-33 3.8E-38 204.1 15.4 168 29-197 22-190 (192)
33 2y8e_A RAB-protein 6, GH09086P 100.0 4.6E-33 1.6E-37 198.0 18.4 167 31-198 12-178 (179)
34 1z06_A RAS-related protein RAB 100.0 6.7E-33 2.3E-37 199.4 18.8 169 28-197 15-188 (189)
35 1z2a_A RAS-related protein RAB 100.0 3.9E-33 1.3E-37 196.5 17.0 165 31-197 3-167 (168)
36 3cbq_A GTP-binding protein REM 100.0 3.2E-33 1.1E-37 202.2 16.5 173 26-199 16-190 (195)
37 3bc1_A RAS-related protein RAB 100.0 2.8E-32 9.7E-37 196.3 21.3 169 29-197 7-185 (195)
38 3q85_A GTP-binding protein REM 100.0 6.3E-33 2.2E-37 195.7 16.6 165 33-198 2-168 (169)
39 3q3j_B RHO-related GTP-binding 100.0 1E-32 3.5E-37 202.3 18.2 169 28-199 22-205 (214)
40 1wms_A RAB-9, RAB9, RAS-relate 100.0 3.4E-32 1.1E-36 193.4 20.2 167 30-198 4-175 (177)
41 3reg_A RHO-like small GTPase; 100.0 3.4E-32 1.2E-36 196.5 20.4 169 29-200 19-191 (194)
42 1ky3_A GTP-binding protein YPT 100.0 6.4E-33 2.2E-37 197.8 16.2 169 30-198 5-179 (182)
43 3c5c_A RAS-like protein 12; GD 100.0 7E-33 2.4E-37 199.1 16.1 165 30-197 18-186 (187)
44 3ihw_A Centg3; RAS, centaurin, 100.0 2.2E-32 7.7E-37 196.0 18.6 164 28-199 15-182 (184)
45 1x3s_A RAS-related protein RAB 100.0 3E-32 1E-36 196.5 19.3 167 30-198 12-179 (195)
46 2fn4_A P23, RAS-related protei 100.0 1.4E-32 4.8E-37 195.8 17.2 167 30-198 6-173 (181)
47 3cph_A RAS-related protein SEC 100.0 4.3E-32 1.5E-36 198.4 19.7 168 28-197 15-182 (213)
48 1c1y_A RAS-related protein RAP 100.0 3.2E-32 1.1E-36 191.6 18.3 164 32-197 2-167 (167)
49 2atx_A Small GTP binding prote 100.0 7.3E-32 2.5E-36 194.7 20.3 166 30-198 15-194 (194)
50 3q72_A GTP-binding protein RAD 100.0 3E-32 1E-36 191.7 17.8 163 33-198 2-165 (166)
51 2gco_A H9, RHO-related GTP-bin 100.0 1E-31 3.4E-36 195.1 21.1 164 31-197 23-200 (201)
52 2nzj_A GTP-binding protein REM 100.0 3E-32 1E-36 193.3 17.6 165 32-198 3-170 (175)
53 1u8z_A RAS-related protein RAL 100.0 5.9E-32 2E-36 190.2 18.7 164 32-197 3-167 (168)
54 4djt_A GTP-binding nuclear pro 100.0 9.3E-33 3.2E-37 202.9 15.1 170 30-199 8-177 (218)
55 3clv_A RAB5 protein, putative; 100.0 3.7E-31 1.3E-35 191.9 22.2 164 31-197 5-204 (208)
56 2g3y_A GTP-binding protein GEM 100.0 7.4E-32 2.5E-36 197.1 18.0 168 29-197 33-203 (211)
57 1vg8_A RAS-related protein RAB 100.0 1.7E-31 5.7E-36 194.5 19.9 166 30-197 5-175 (207)
58 1m7b_A RND3/RHOE small GTP-bin 100.0 8.6E-32 2.9E-36 192.8 17.9 165 30-197 4-183 (184)
59 1gwn_A RHO-related GTP-binding 100.0 4.6E-32 1.6E-36 197.6 16.7 165 30-197 25-204 (205)
60 2bov_A RAla, RAS-related prote 100.0 1.5E-31 5.2E-36 194.5 19.4 166 30-197 11-177 (206)
61 4gzl_A RAS-related C3 botulinu 100.0 8.1E-32 2.8E-36 196.1 17.8 165 28-195 25-203 (204)
62 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.8E-31 9.5E-36 190.0 20.2 167 31-200 3-183 (186)
63 2a9k_A RAS-related protein RAL 100.0 1.7E-31 5.9E-36 191.1 19.0 166 31-198 16-182 (187)
64 2erx_A GTP-binding protein DI- 100.0 9.8E-32 3.3E-36 189.8 17.1 166 32-199 2-169 (172)
65 1kao_A RAP2A; GTP-binding prot 100.0 6.7E-32 2.3E-36 189.7 15.9 163 32-196 2-165 (167)
66 2yc2_C IFT27, small RAB-relate 100.0 4.7E-32 1.6E-36 197.4 15.3 167 31-197 18-192 (208)
67 2atv_A RERG, RAS-like estrogen 100.0 1.6E-31 5.3E-36 193.3 17.2 166 30-198 25-192 (196)
68 2fv8_A H6, RHO-related GTP-bin 100.0 5E-31 1.7E-35 192.3 19.4 167 31-200 23-203 (207)
69 4dsu_A GTPase KRAS, isoform 2B 100.0 7E-31 2.4E-35 188.3 19.8 163 31-196 2-165 (189)
70 3con_A GTPase NRAS; structural 100.0 1.1E-30 3.6E-35 187.9 20.7 165 31-198 19-184 (190)
71 2q3h_A RAS homolog gene family 100.0 1.6E-31 5.5E-36 193.9 16.5 168 28-198 15-196 (201)
72 2j0v_A RAC-like GTP-binding pr 100.0 1.5E-31 5.2E-36 195.6 16.5 166 31-199 7-182 (212)
73 2iwr_A Centaurin gamma 1; ANK 100.0 4.2E-31 1.4E-35 188.0 18.2 159 31-197 5-169 (178)
74 2j1l_A RHO-related GTP-binding 100.0 2.8E-31 9.7E-36 194.6 16.7 167 31-200 32-212 (214)
75 3bwd_D RAC-like GTP-binding pr 100.0 6E-32 2.1E-36 192.9 12.6 165 31-198 6-182 (182)
76 2gf0_A GTP-binding protein DI- 100.0 1.4E-30 4.8E-35 188.4 18.9 166 31-199 6-173 (199)
77 2ce2_X GTPase HRAS; signaling 100.0 1.8E-30 6.2E-35 182.1 18.9 162 33-197 3-165 (166)
78 3gj0_A GTP-binding nuclear pro 100.0 1.1E-31 3.7E-36 197.7 12.5 169 27-199 9-177 (221)
79 4bas_A ADP-ribosylation factor 100.0 4.3E-31 1.5E-35 191.1 14.5 167 26-199 10-191 (199)
80 1zd9_A ADP-ribosylation factor 100.0 4.7E-31 1.6E-35 189.6 13.9 167 26-199 15-187 (188)
81 2cjw_A GTP-binding protein GEM 100.0 8.9E-30 3.1E-34 183.7 18.9 164 31-196 4-171 (192)
82 1upt_A ARL1, ADP-ribosylation 100.0 2.1E-30 7.3E-35 183.0 15.2 161 31-199 5-171 (171)
83 3t1o_A Gliding protein MGLA; G 100.0 7.3E-31 2.5E-35 189.5 13.0 166 29-198 10-193 (198)
84 1r8s_A ADP-ribosylation factor 100.0 7.5E-31 2.6E-35 184.2 11.6 158 34-199 1-164 (164)
85 2h57_A ADP-ribosylation factor 100.0 1.4E-29 4.7E-34 182.2 18.3 162 31-199 19-189 (190)
86 1ksh_A ARF-like protein 2; sma 100.0 4E-29 1.4E-33 179.0 19.1 160 31-198 16-181 (186)
87 1m2o_B GTP-binding protein SAR 100.0 3.7E-29 1.3E-33 180.1 18.2 157 31-195 21-190 (190)
88 2b6h_A ADP-ribosylation factor 100.0 2.3E-30 8E-35 186.7 11.4 162 29-198 25-192 (192)
89 1f6b_A SAR1; gtpases, N-termin 100.0 2.7E-29 9.2E-34 182.0 16.6 157 31-195 23-197 (198)
90 2f9l_A RAB11B, member RAS onco 100.0 1.4E-28 4.9E-33 178.2 20.4 165 31-196 3-167 (199)
91 1zj6_A ADP-ribosylation factor 100.0 2.2E-29 7.4E-34 180.7 15.8 162 31-200 14-181 (187)
92 2h17_A ADP-ribosylation factor 100.0 2.6E-29 8.9E-34 179.4 14.9 159 29-195 17-181 (181)
93 1oix_A RAS-related protein RAB 100.0 1.9E-28 6.6E-33 176.5 19.0 166 29-195 25-190 (191)
94 1fzq_A ADP-ribosylation factor 100.0 4E-29 1.4E-33 178.6 14.5 161 31-199 14-180 (181)
95 3llu_A RAS-related GTP-binding 100.0 1.2E-29 4.1E-34 183.5 11.6 164 28-196 15-196 (196)
96 2x77_A ADP-ribosylation factor 100.0 5.9E-30 2E-34 183.9 9.0 162 31-200 20-187 (189)
97 3th5_A RAS-related C3 botulinu 99.9 1.3E-31 4.5E-36 194.9 0.0 162 31-195 28-203 (204)
98 2wkq_A NPH1-1, RAS-related C3 100.0 3.2E-28 1.1E-32 189.1 18.5 165 31-198 153-331 (332)
99 2zej_A Dardarin, leucine-rich 100.0 2E-29 6.9E-34 180.6 8.7 166 33-199 2-180 (184)
100 1moz_A ARL1, ADP-ribosylation 100.0 1.3E-28 4.3E-33 175.8 12.2 159 31-197 16-180 (183)
101 2fh5_B SR-beta, signal recogni 100.0 3.4E-27 1.2E-31 172.6 16.9 162 31-195 5-214 (214)
102 2wji_A Ferrous iron transport 100.0 1.2E-27 4.1E-32 168.4 12.9 154 33-196 3-164 (165)
103 3o47_A ADP-ribosylation factor 100.0 8E-28 2.7E-32 186.8 12.9 162 29-198 161-328 (329)
104 2lkc_A Translation initiation 100.0 1.5E-27 5.2E-32 169.4 13.4 160 30-199 5-173 (178)
105 3lvq_E ARF-GAP with SH3 domain 99.9 1.3E-27 4.4E-32 195.3 13.5 163 30-200 319-487 (497)
106 3c5h_A Glucocorticoid receptor 99.9 8.9E-29 3.1E-33 185.9 6.1 169 26-196 12-254 (255)
107 2qu8_A Putative nucleolar GTP- 99.9 9.1E-27 3.1E-31 172.2 15.0 162 31-197 27-205 (228)
108 3r7w_A Gtpase1, GTP-binding pr 99.9 8.2E-27 2.8E-31 179.6 15.2 161 32-197 2-181 (307)
109 1svi_A GTP-binding protein YSX 99.9 1.3E-26 4.4E-31 167.1 11.5 160 30-197 20-195 (195)
110 3iev_A GTP-binding protein ERA 99.9 1.4E-25 4.7E-30 172.8 16.9 167 28-198 5-183 (308)
111 2wjg_A FEOB, ferrous iron tran 99.9 1.6E-26 5.5E-31 165.6 10.8 158 32-199 6-171 (188)
112 2dyk_A GTP-binding protein; GT 99.9 2.5E-26 8.7E-31 160.4 11.4 150 34-195 2-160 (161)
113 2cxx_A Probable GTP-binding pr 99.9 8.4E-27 2.9E-31 167.2 8.9 157 34-200 2-187 (190)
114 2gj8_A MNME, tRNA modification 99.9 3.3E-26 1.1E-30 162.2 9.4 156 32-198 3-167 (172)
115 3r7w_B Gtpase2, GTP-binding pr 99.9 1.1E-26 3.7E-31 178.0 7.2 156 35-198 1-175 (331)
116 3pqc_A Probable GTP-binding pr 99.9 2.2E-25 7.5E-30 160.4 13.0 159 28-197 18-194 (195)
117 3dpu_A RAB family protein; roc 99.9 4.1E-26 1.4E-30 187.8 10.0 167 29-199 37-210 (535)
118 3a1s_A Iron(II) transport prot 99.9 1.3E-25 4.6E-30 168.7 11.9 156 31-196 3-166 (258)
119 4dhe_A Probable GTP-binding pr 99.9 2.6E-25 8.8E-30 163.6 10.5 164 30-199 26-213 (223)
120 3b1v_A Ferrous iron uptake tra 99.9 3.2E-25 1.1E-29 167.6 11.0 156 32-198 2-165 (272)
121 3iby_A Ferrous iron transport 99.9 1.8E-25 6.1E-30 167.8 8.6 151 34-194 2-164 (256)
122 3i8s_A Ferrous iron transport 99.9 1.7E-25 5.8E-30 169.6 8.2 156 33-198 3-170 (274)
123 3k53_A Ferrous iron transport 99.9 1.5E-24 5.1E-29 164.3 10.4 158 32-198 2-167 (271)
124 1nrj_B SR-beta, signal recogni 99.9 2.9E-25 9.8E-30 162.8 5.1 144 30-183 9-170 (218)
125 1wf3_A GTP-binding protein; GT 99.9 7.6E-24 2.6E-28 162.3 12.3 156 32-197 6-173 (301)
126 3gee_A MNME, tRNA modification 99.9 7E-24 2.4E-28 171.3 12.6 157 32-196 232-397 (476)
127 1cip_A Protein (guanine nucleo 99.9 3.2E-24 1.1E-28 167.3 10.3 117 83-199 193-346 (353)
128 3qq5_A Small GTP-binding prote 99.9 5.9E-25 2E-29 175.0 6.0 164 25-198 26-197 (423)
129 1zcb_A G alpha I/13; GTP-bindi 99.9 9.2E-24 3.2E-28 165.2 11.9 115 83-197 201-353 (362)
130 2hjg_A GTP-binding protein ENG 99.9 7.6E-24 2.6E-28 170.3 10.6 159 31-196 173-348 (436)
131 3sjy_A Translation initiation 99.9 1.5E-22 5.2E-27 161.2 16.8 169 29-199 4-194 (403)
132 1lnz_A SPO0B-associated GTP-bi 99.9 1.2E-23 4.2E-28 163.4 10.2 161 34-200 159-333 (342)
133 1s0u_A EIF-2-gamma, translatio 99.9 3E-22 1E-26 159.8 18.4 168 30-199 5-200 (408)
134 2e87_A Hypothetical protein PH 99.9 7.9E-23 2.7E-27 160.5 14.8 160 31-196 165-335 (357)
135 4dcu_A GTP-binding protein ENG 99.9 2.1E-23 7.2E-28 168.6 11.8 160 30-196 192-368 (456)
136 3cb4_D GTP-binding protein LEP 99.9 2.4E-22 8.2E-27 166.0 15.0 162 32-199 3-184 (599)
137 1kk1_A EIF2gamma; initiation o 99.9 3.8E-22 1.3E-26 159.3 15.1 169 29-199 6-202 (410)
138 2ywe_A GTP-binding protein LEP 99.9 4.1E-22 1.4E-26 164.4 15.7 163 31-199 4-186 (600)
139 3lxx_A GTPase IMAP family memb 99.9 2.5E-22 8.5E-27 149.4 12.6 164 29-197 25-214 (239)
140 1wb1_A Translation elongation 99.9 2.5E-22 8.6E-27 163.0 13.1 159 31-196 17-188 (482)
141 1ega_A Protein (GTP-binding pr 99.9 6.1E-22 2.1E-26 151.9 14.3 160 31-198 6-176 (301)
142 1xzp_A Probable tRNA modificat 99.9 1.5E-22 5.2E-27 163.7 10.4 152 33-196 243-404 (482)
143 1mky_A Probable GTP-binding pr 99.9 2.9E-22 1E-26 161.2 12.0 150 34-196 2-165 (439)
144 3j2k_7 ERF3, eukaryotic polype 99.9 1.9E-21 6.4E-26 156.3 16.3 155 29-189 13-217 (439)
145 1azs_C GS-alpha; complex (lyas 99.9 6.4E-22 2.2E-26 156.0 13.0 115 83-197 217-385 (402)
146 3izy_P Translation initiation 99.9 8.7E-24 3E-28 172.3 2.4 160 32-197 3-168 (537)
147 2qtf_A Protein HFLX, GTP-bindi 99.9 1.1E-21 3.7E-26 153.9 13.5 163 33-199 178-356 (364)
148 3geh_A MNME, tRNA modification 99.9 2E-22 6.8E-27 162.3 9.5 155 32-199 223-386 (462)
149 3lxw_A GTPase IMAP family memb 99.9 5.8E-22 2E-26 148.0 10.6 165 31-198 19-209 (247)
150 2xtp_A GTPase IMAP family memb 99.9 1.1E-21 3.9E-26 147.5 11.6 164 29-197 18-208 (260)
151 3ohm_A Guanine nucleotide-bind 99.9 1.7E-21 5.8E-26 150.0 12.2 118 83-200 167-321 (327)
152 1d2e_A Elongation factor TU (E 99.9 4E-21 1.4E-25 152.7 13.2 163 32-199 2-197 (397)
153 3p26_A Elongation factor 1 alp 99.9 1.8E-21 6.1E-26 158.3 11.2 151 31-186 31-227 (483)
154 2hjg_A GTP-binding protein ENG 99.9 5.8E-22 2E-26 159.3 8.2 152 34-197 4-165 (436)
155 2c78_A Elongation factor TU-A; 99.9 2.6E-21 8.9E-26 154.2 11.1 163 30-199 8-214 (405)
156 3t5d_A Septin-7; GTP-binding p 99.9 7.9E-22 2.7E-26 149.5 7.7 161 31-196 6-203 (274)
157 3tr5_A RF-3, peptide chain rel 99.9 6.2E-21 2.1E-25 156.0 13.1 116 31-153 11-148 (528)
158 1zun_B Sulfate adenylate trans 99.9 1.1E-20 3.7E-25 151.8 14.3 153 29-187 20-214 (434)
159 2ged_A SR-beta, signal recogni 99.8 1.5E-21 5.2E-26 140.3 7.2 117 30-156 45-173 (193)
160 1jny_A EF-1-alpha, elongation 99.8 2.8E-21 9.5E-26 155.3 8.9 151 31-187 4-203 (435)
161 1mky_A Probable GTP-binding pr 99.8 2.7E-20 9.4E-25 149.7 14.6 159 31-196 178-354 (439)
162 1g7s_A Translation initiation 99.8 3.2E-20 1.1E-24 153.5 14.5 158 32-196 4-217 (594)
163 3izq_1 HBS1P, elongation facto 99.8 7.5E-21 2.6E-25 158.0 10.0 153 30-187 164-362 (611)
164 1r5b_A Eukaryotic peptide chai 99.8 2.4E-21 8.1E-26 156.8 6.6 155 31-188 41-243 (467)
165 2xtz_A Guanine nucleotide-bind 99.8 1.3E-20 4.4E-25 146.9 10.1 117 81-197 181-345 (354)
166 1zo1_I IF2, translation initia 99.8 4.2E-22 1.4E-26 161.2 1.5 157 31-194 2-164 (501)
167 4dcu_A GTP-binding protein ENG 99.8 4.5E-21 1.5E-25 155.0 7.2 156 32-197 22-185 (456)
168 2elf_A Protein translation elo 99.8 5.8E-21 2E-25 150.1 7.6 145 35-196 23-179 (370)
169 4fid_A G protein alpha subunit 99.8 1.6E-20 5.5E-25 145.0 9.2 115 83-197 161-328 (340)
170 3avx_A Elongation factor TS, e 99.8 5.8E-20 2E-24 159.0 12.0 165 29-198 292-487 (1289)
171 2aka_B Dynamin-1; fusion prote 99.8 8.3E-21 2.8E-25 145.4 5.3 161 31-194 24-250 (299)
172 1f60_A Elongation factor EEF1A 99.8 2.7E-19 9.3E-24 144.5 12.9 149 31-185 5-200 (458)
173 2qag_A Septin-2, protein NEDD5 99.8 4.7E-21 1.6E-25 150.3 1.9 160 31-196 35-232 (361)
174 3mca_A HBS1, elongation factor 99.8 3.6E-21 1.2E-25 159.5 0.2 161 30-196 174-396 (592)
175 2dy1_A Elongation factor G; tr 99.8 9.4E-19 3.2E-23 147.0 14.0 116 30-152 6-139 (665)
176 3def_A T7I23.11 protein; chlor 99.8 1.6E-18 5.6E-23 130.4 13.3 122 32-157 35-169 (262)
177 1pui_A ENGB, probable GTP-bind 99.8 3.2E-19 1.1E-23 129.7 9.1 161 28-198 21-200 (210)
178 2j69_A Bacterial dynamin-like 99.8 5.6E-19 1.9E-23 148.9 10.6 163 31-196 67-324 (695)
179 1dar_A EF-G, elongation factor 99.8 3.4E-18 1.1E-22 144.1 14.6 117 30-153 9-143 (691)
180 2h5e_A Peptide chain release f 99.8 1.1E-17 3.7E-22 136.9 16.5 116 31-153 11-148 (529)
181 1jwy_B Dynamin A GTPase domain 99.8 1.4E-18 4.7E-23 134.1 9.1 112 83-197 131-262 (315)
182 3t34_A Dynamin-related protein 99.8 3.1E-19 1.1E-23 140.2 5.4 156 33-190 34-254 (360)
183 2rdo_7 EF-G, elongation factor 99.8 2.9E-17 9.7E-22 138.7 16.8 119 31-153 8-148 (704)
184 1udx_A The GTP-binding protein 99.8 6.2E-18 2.1E-22 134.3 11.6 161 34-199 158-327 (416)
185 2xex_A Elongation factor G; GT 99.8 1.3E-17 4.4E-22 140.6 14.1 117 30-153 7-141 (693)
186 1h65_A Chloroplast outer envel 99.8 1.4E-17 4.8E-22 125.8 12.6 122 31-156 37-171 (270)
187 1wxq_A GTP-binding protein; st 99.7 1.7E-18 5.8E-23 137.1 4.6 86 34-119 1-114 (397)
188 2qag_C Septin-7; cell cycle, c 99.7 2.8E-17 9.5E-22 130.6 9.5 163 29-196 27-226 (418)
189 2qnr_A Septin-2, protein NEDD5 99.7 2.8E-18 9.7E-23 131.4 3.6 164 30-198 15-215 (301)
190 1u0l_A Probable GTPase ENGC; p 99.7 4.7E-18 1.6E-22 130.3 3.8 134 48-193 32-169 (301)
191 3vqt_A RF-3, peptide chain rel 99.7 4.2E-16 1.4E-20 128.1 15.2 116 31-153 29-166 (548)
192 2x2e_A Dynamin-1; nitration, h 99.7 3.1E-17 1.1E-21 128.5 4.1 160 31-193 29-254 (353)
193 2wsm_A Hydrogenase expression/ 99.7 1.8E-16 6.2E-21 116.1 7.4 157 32-199 29-216 (221)
194 3p32_A Probable GTPase RV1496/ 99.6 7.2E-17 2.4E-21 126.4 3.8 102 83-196 172-283 (355)
195 2hf9_A Probable hydrogenase ni 99.6 3.9E-18 1.3E-22 125.4 -3.7 155 32-197 37-224 (226)
196 1n0u_A EF-2, elongation factor 99.6 7.5E-16 2.6E-20 132.4 8.0 118 31-152 17-163 (842)
197 1jal_A YCHF protein; nucleotid 99.6 1.5E-14 5.2E-19 112.7 14.3 162 34-195 3-277 (363)
198 2qpt_A EH domain-containing pr 99.6 8.3E-16 2.9E-20 126.5 7.5 119 30-154 62-233 (550)
199 4fn5_A EF-G 1, elongation fact 99.6 4.6E-14 1.6E-18 119.5 15.4 119 30-152 10-150 (709)
200 3j25_A Tetracycline resistance 99.6 9.8E-16 3.4E-20 128.2 3.5 160 33-199 2-241 (638)
201 2www_A Methylmalonic aciduria 99.5 3.5E-14 1.2E-18 110.8 10.7 101 83-195 167-277 (349)
202 4a9a_A Ribosome-interacting GT 99.5 1.6E-13 5.4E-18 107.5 14.1 156 31-190 70-241 (376)
203 3zvr_A Dynamin-1; hydrolase, D 99.5 8.3E-15 2.8E-19 123.4 7.3 156 31-193 49-274 (772)
204 2dby_A GTP-binding protein; GD 99.5 7.6E-14 2.6E-18 109.3 11.8 85 34-118 2-111 (368)
205 2p67_A LAO/AO transport system 99.5 5.5E-15 1.9E-19 115.1 4.4 103 83-196 149-260 (341)
206 1yrb_A ATP(GTP)binding protein 99.5 7.6E-14 2.6E-18 104.7 9.5 109 83-196 109-256 (262)
207 2yv5_A YJEQ protein; hydrolase 99.5 1.8E-13 6E-18 104.9 8.2 98 93-193 66-165 (302)
208 2qm8_A GTPase/ATPase; G protei 99.4 1.4E-13 4.7E-18 107.0 6.8 102 83-195 148-259 (337)
209 3l82_B F-box only protein 4; T 99.3 9.5E-13 3.2E-17 94.1 5.6 106 91-199 110-225 (227)
210 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 1.5E-10 5.1E-15 91.3 13.2 88 31-118 18-127 (392)
211 2ohf_A Protein OLA1, GTP-bindi 99.2 5E-12 1.7E-16 99.5 4.8 89 31-119 20-129 (396)
212 3l2o_B F-box only protein 4; s 99.2 1.8E-11 6.1E-16 91.6 6.0 108 90-199 194-310 (312)
213 3h2y_A GTPase family protein; 99.0 8.5E-10 2.9E-14 86.6 7.4 98 92-196 55-159 (368)
214 2j37_W Signal recognition part 99.0 3.4E-10 1.2E-14 91.9 4.3 153 31-194 99-310 (504)
215 3ec1_A YQEH GTPase; atnos1, at 98.9 1.4E-10 4.7E-15 91.2 0.1 140 33-182 162-316 (369)
216 1tq4_A IIGP1, interferon-induc 98.9 2.5E-08 8.6E-13 79.1 12.9 159 34-198 70-254 (413)
217 2qag_B Septin-6, protein NEDD5 98.9 2.8E-09 9.6E-14 84.6 6.8 145 30-179 39-218 (427)
218 3h2y_A GTPase family protein; 98.8 1.1E-10 3.8E-15 91.6 -2.6 136 33-177 160-310 (368)
219 3sop_A Neuronal-specific septi 98.8 3.7E-08 1.3E-12 74.1 10.5 117 33-154 2-155 (270)
220 3ec1_A YQEH GTPase; atnos1, at 98.8 2.7E-09 9.4E-14 83.8 4.5 99 92-197 57-162 (369)
221 1puj_A YLQF, conserved hypothe 98.8 5.6E-09 1.9E-13 79.0 4.6 100 87-196 3-105 (282)
222 1puj_A YLQF, conserved hypothe 98.5 1.8E-07 6.2E-12 70.7 5.9 59 31-94 118-176 (282)
223 3dm5_A SRP54, signal recogniti 98.5 2.9E-07 9.8E-12 73.5 6.6 86 83-178 183-274 (443)
224 3cnl_A YLQF, putative uncharac 98.4 1.3E-07 4.3E-12 70.8 3.2 56 34-94 100-155 (262)
225 2v3c_C SRP54, signal recogniti 98.4 3.4E-07 1.1E-11 73.2 5.5 83 83-176 181-271 (432)
226 1f5n_A Interferon-induced guan 98.3 1.1E-06 3.8E-11 72.7 7.1 66 30-95 35-103 (592)
227 1t9h_A YLOQ, probable GTPase E 98.3 1.3E-07 4.6E-12 72.1 1.6 91 97-190 77-170 (307)
228 3cnl_A YLQF, putative uncharac 98.3 1.9E-07 6.7E-12 69.8 1.5 93 90-193 4-97 (262)
229 3kl4_A SRP54, signal recogniti 98.2 5.5E-07 1.9E-11 71.8 2.5 86 83-178 180-273 (433)
230 3szr_A Interferon-induced GTP- 98.2 4.9E-06 1.7E-10 69.4 7.6 23 35-57 47-69 (608)
231 2rcn_A Probable GTPase ENGC; Y 98.0 1.1E-05 3.8E-10 62.7 7.1 87 102-191 126-213 (358)
232 1j8m_F SRP54, signal recogniti 98.0 4E-06 1.4E-10 63.8 3.2 89 83-184 181-278 (297)
233 3q5d_A Atlastin-1; G protein, 97.8 2.5E-05 8.4E-10 62.6 5.7 26 31-56 65-90 (447)
234 1bif_A 6-phosphofructo-2-kinas 97.8 2.1E-06 7.3E-11 69.5 -0.6 102 31-135 37-148 (469)
235 1ye8_A Protein THEP1, hypothet 97.4 9.1E-05 3.1E-09 52.0 3.4 23 34-56 1-23 (178)
236 2rcn_A Probable GTPase ENGC; Y 97.3 0.00024 8.3E-09 55.3 5.1 24 35-58 217-240 (358)
237 1kgd_A CASK, peripheral plasma 97.3 0.00013 4.6E-09 51.1 3.2 22 35-56 7-28 (180)
238 2xxa_A Signal recognition part 97.3 0.00058 2E-08 54.6 7.2 83 83-176 184-273 (433)
239 1lvg_A Guanylate kinase, GMP k 97.3 0.00017 5.9E-09 51.4 3.2 22 34-55 5-26 (198)
240 3tr0_A Guanylate kinase, GMP k 97.2 0.00024 8.3E-09 50.5 3.2 22 35-56 9-30 (205)
241 1zp6_A Hypothetical protein AT 97.1 0.00024 8.3E-09 50.0 3.0 23 34-56 10-32 (191)
242 3a00_A Guanylate kinase, GMP k 97.1 0.00025 8.7E-09 49.9 3.1 21 36-56 4-24 (186)
243 1t9h_A YLOQ, probable GTPase E 97.1 8.2E-05 2.8E-09 56.7 0.4 24 34-57 174-197 (307)
244 4gp7_A Metallophosphoesterase; 97.1 0.00022 7.7E-09 49.5 2.5 20 35-54 11-30 (171)
245 1znw_A Guanylate kinase, GMP k 97.1 0.00031 1E-08 50.3 3.2 24 34-57 21-44 (207)
246 1s96_A Guanylate kinase, GMP k 97.1 0.00032 1.1E-08 50.8 3.2 25 33-57 16-40 (219)
247 3c8u_A Fructokinase; YP_612366 97.1 0.00037 1.3E-08 49.9 3.4 25 31-55 20-44 (208)
248 1z6g_A Guanylate kinase; struc 97.1 0.00033 1.1E-08 50.7 3.2 25 33-57 23-47 (218)
249 3ney_A 55 kDa erythrocyte memb 97.0 0.0005 1.7E-08 48.9 3.8 24 33-56 19-42 (197)
250 3tau_A Guanylate kinase, GMP k 97.0 0.00038 1.3E-08 49.9 3.2 25 33-57 8-32 (208)
251 3umf_A Adenylate kinase; rossm 97.0 0.00069 2.4E-08 49.0 4.3 21 35-55 31-51 (217)
252 1ex7_A Guanylate kinase; subst 97.0 0.00046 1.6E-08 48.7 3.2 21 36-56 4-24 (186)
253 1kag_A SKI, shikimate kinase I 97.0 0.0005 1.7E-08 47.5 3.2 23 34-56 5-27 (173)
254 1htw_A HI0065; nucleotide-bind 97.0 0.00052 1.8E-08 47.1 3.2 25 33-57 33-57 (158)
255 2qor_A Guanylate kinase; phosp 97.0 0.0005 1.7E-08 49.1 3.2 24 33-56 12-35 (204)
256 2cdn_A Adenylate kinase; phosp 96.9 0.0007 2.4E-08 48.1 3.9 25 31-55 18-42 (201)
257 3asz_A Uridine kinase; cytidin 96.9 0.0006 2E-08 48.8 3.5 24 32-55 5-28 (211)
258 2j41_A Guanylate kinase; GMP, 96.9 0.00053 1.8E-08 48.8 3.2 25 33-57 6-30 (207)
259 3lw7_A Adenylate kinase relate 96.9 0.00052 1.8E-08 47.2 3.0 20 34-53 2-21 (179)
260 2bdt_A BH3686; alpha-beta prot 96.9 0.00055 1.9E-08 48.1 3.2 21 35-55 4-24 (189)
261 1ly1_A Polynucleotide kinase; 96.9 0.00058 2E-08 47.4 3.2 22 34-55 3-24 (181)
262 3tif_A Uncharacterized ABC tra 96.9 0.00049 1.7E-08 50.4 2.9 23 34-56 32-54 (235)
263 3kb2_A SPBC2 prophage-derived 96.9 0.00059 2E-08 47.0 3.1 21 35-55 3-23 (173)
264 4eun_A Thermoresistant glucoki 96.9 0.00061 2.1E-08 48.5 3.2 23 33-55 29-51 (200)
265 2i3b_A HCR-ntpase, human cance 96.9 0.00065 2.2E-08 48.0 3.1 22 35-56 3-24 (189)
266 2eyu_A Twitching motility prot 96.9 0.00064 2.2E-08 50.6 3.2 24 32-55 24-47 (261)
267 3fb4_A Adenylate kinase; psych 96.9 0.00066 2.3E-08 48.7 3.2 22 34-55 1-22 (216)
268 2bbw_A Adenylate kinase 4, AK4 96.8 0.0007 2.4E-08 49.8 3.3 22 33-54 27-48 (246)
269 2onk_A Molybdate/tungstate ABC 96.8 0.00069 2.3E-08 49.8 3.2 22 35-56 26-47 (240)
270 2pcj_A ABC transporter, lipopr 96.8 0.00056 1.9E-08 49.7 2.7 22 35-56 32-53 (224)
271 3dl0_A Adenylate kinase; phosp 96.8 0.0007 2.4E-08 48.6 3.2 22 34-55 1-22 (216)
272 1knq_A Gluconate kinase; ALFA/ 96.8 0.0011 3.7E-08 45.9 4.0 22 34-55 9-30 (175)
273 1y63_A LMAJ004144AAA protein; 96.8 0.001 3.6E-08 46.6 3.8 25 32-56 9-33 (184)
274 3sr0_A Adenylate kinase; phosp 96.8 0.00088 3E-08 48.1 3.4 22 34-55 1-22 (206)
275 1sgw_A Putative ABC transporte 96.8 0.00073 2.5E-08 48.8 2.9 22 35-56 37-58 (214)
276 2v9p_A Replication protein E1; 96.8 0.00082 2.8E-08 51.1 3.3 24 32-55 125-148 (305)
277 1np6_A Molybdopterin-guanine d 96.8 0.00087 3E-08 46.7 3.2 23 34-56 7-29 (174)
278 3t61_A Gluconokinase; PSI-biol 96.8 0.00082 2.8E-08 47.8 3.2 22 34-55 19-40 (202)
279 3ec2_A DNA replication protein 96.8 0.00075 2.6E-08 47.0 2.9 24 33-56 38-61 (180)
280 2cbz_A Multidrug resistance-as 96.8 0.00078 2.7E-08 49.4 3.1 22 35-56 33-54 (237)
281 2chg_A Replication factor C sm 96.8 0.0025 8.5E-08 45.4 5.7 21 35-55 40-60 (226)
282 3vaa_A Shikimate kinase, SK; s 96.8 0.00098 3.3E-08 47.3 3.5 23 33-55 25-47 (199)
283 1b0u_A Histidine permease; ABC 96.8 0.00072 2.5E-08 50.4 2.9 22 35-56 34-55 (262)
284 3gfo_A Cobalt import ATP-bindi 96.8 0.00075 2.6E-08 50.6 2.9 22 35-56 36-57 (275)
285 2if2_A Dephospho-COA kinase; a 96.8 0.0009 3.1E-08 47.6 3.2 21 35-55 3-23 (204)
286 3cm0_A Adenylate kinase; ATP-b 96.7 0.0011 3.8E-08 46.3 3.6 23 33-55 4-26 (186)
287 1sxj_E Activator 1 40 kDa subu 96.7 0.0043 1.5E-07 47.9 7.2 22 35-56 38-59 (354)
288 1mv5_A LMRA, multidrug resista 96.7 0.00088 3E-08 49.3 3.1 23 34-56 29-51 (243)
289 3tlx_A Adenylate kinase 2; str 96.7 0.0012 4.1E-08 48.5 3.8 24 32-55 28-51 (243)
290 1qhx_A CPT, protein (chloramph 96.7 0.00098 3.3E-08 46.2 3.2 23 34-56 4-26 (178)
291 2pze_A Cystic fibrosis transme 96.7 0.00082 2.8E-08 49.0 2.9 22 35-56 36-57 (229)
292 1g6h_A High-affinity branched- 96.7 0.0008 2.7E-08 50.0 2.9 22 35-56 35-56 (257)
293 2jaq_A Deoxyguanosine kinase; 96.7 0.0011 3.6E-08 47.0 3.4 21 35-55 2-22 (205)
294 2d2e_A SUFC protein; ABC-ATPas 96.7 0.00094 3.2E-08 49.4 3.2 22 35-56 31-52 (250)
295 2rhm_A Putative kinase; P-loop 96.7 0.0012 4.1E-08 46.3 3.6 23 33-55 5-27 (193)
296 4g1u_C Hemin import ATP-bindin 96.7 0.00081 2.8E-08 50.2 2.8 22 35-56 39-60 (266)
297 2olj_A Amino acid ABC transpor 96.7 0.00084 2.9E-08 50.0 2.9 22 35-56 52-73 (263)
298 1ukz_A Uridylate kinase; trans 96.7 0.0017 5.8E-08 46.1 4.4 23 33-55 15-37 (203)
299 1ji0_A ABC transporter; ATP bi 96.7 0.00085 2.9E-08 49.3 2.9 22 35-56 34-55 (240)
300 2ff7_A Alpha-hemolysin translo 96.7 0.00093 3.2E-08 49.3 3.1 22 35-56 37-58 (247)
301 1nks_A Adenylate kinase; therm 96.7 0.0011 3.8E-08 46.4 3.4 21 35-55 3-23 (194)
302 3aez_A Pantothenate kinase; tr 96.7 0.0016 5.5E-08 49.8 4.5 25 31-55 88-112 (312)
303 1cke_A CK, MSSA, protein (cyti 96.7 0.0011 3.8E-08 47.8 3.4 22 34-55 6-27 (227)
304 2qi9_C Vitamin B12 import ATP- 96.7 0.0009 3.1E-08 49.5 2.9 22 35-56 28-49 (249)
305 1aky_A Adenylate kinase; ATP:A 96.7 0.0012 4.1E-08 47.6 3.5 23 33-55 4-26 (220)
306 1vpl_A ABC transporter, ATP-bi 96.7 0.00091 3.1E-08 49.7 2.9 22 35-56 43-64 (256)
307 2zu0_C Probable ATP-dependent 96.7 0.001 3.5E-08 49.7 3.2 22 35-56 48-69 (267)
308 4a74_A DNA repair and recombin 96.7 0.00098 3.3E-08 48.1 3.0 23 34-56 26-48 (231)
309 3b85_A Phosphate starvation-in 96.7 0.00072 2.5E-08 48.6 2.2 22 35-56 24-45 (208)
310 1e4v_A Adenylate kinase; trans 96.7 0.0011 3.8E-08 47.6 3.2 22 34-55 1-22 (214)
311 2ghi_A Transport protein; mult 96.7 0.001 3.6E-08 49.4 3.1 23 34-56 47-69 (260)
312 1u0l_A Probable GTPase ENGC; p 96.7 0.00088 3E-08 50.9 2.7 24 34-57 170-193 (301)
313 1jjv_A Dephospho-COA kinase; P 96.7 0.0013 4.6E-08 46.8 3.5 22 34-55 3-24 (206)
314 1kht_A Adenylate kinase; phosp 96.6 0.0013 4.5E-08 46.0 3.4 22 34-55 4-25 (192)
315 3uie_A Adenylyl-sulfate kinase 96.6 0.0015 5.3E-08 46.3 3.8 24 32-55 24-47 (200)
316 2ehv_A Hypothetical protein PH 96.6 0.0012 3.9E-08 48.4 3.2 21 34-54 31-51 (251)
317 2ixe_A Antigen peptide transpo 96.6 0.001 3.5E-08 49.8 2.9 22 35-56 47-68 (271)
318 3co5_A Putative two-component 96.6 0.0022 7.5E-08 43.0 4.3 23 33-55 27-49 (143)
319 1njg_A DNA polymerase III subu 96.6 0.0014 4.9E-08 47.2 3.6 21 35-55 47-67 (250)
320 2jeo_A Uridine-cytidine kinase 96.6 0.0015 5.1E-08 48.0 3.7 25 31-55 23-47 (245)
321 2ihy_A ABC transporter, ATP-bi 96.6 0.0011 3.9E-08 49.8 3.1 22 35-56 49-70 (279)
322 2plr_A DTMP kinase, probable t 96.6 0.0015 5.3E-08 46.5 3.7 23 33-55 4-26 (213)
323 1tev_A UMP-CMP kinase; ploop, 96.6 0.0015 5.2E-08 45.8 3.6 23 33-55 3-25 (196)
324 3lnc_A Guanylate kinase, GMP k 96.6 0.0007 2.4E-08 49.3 1.9 24 33-56 27-51 (231)
325 3trf_A Shikimate kinase, SK; a 96.6 0.0013 4.4E-08 45.9 3.2 22 34-55 6-27 (185)
326 2qt1_A Nicotinamide riboside k 96.6 0.0017 5.7E-08 46.3 3.8 24 33-56 21-44 (207)
327 3iij_A Coilin-interacting nucl 96.6 0.0015 5.1E-08 45.5 3.5 23 33-55 11-33 (180)
328 1ak2_A Adenylate kinase isoenz 96.6 0.0015 5.2E-08 47.6 3.6 23 33-55 16-38 (233)
329 2yv5_A YJEQ protein; hydrolase 96.6 0.0012 4.1E-08 50.2 3.1 23 34-57 166-188 (302)
330 2nq2_C Hypothetical ABC transp 96.6 0.0011 3.8E-08 49.1 2.9 22 35-56 33-54 (253)
331 2f1r_A Molybdopterin-guanine d 96.6 0.00065 2.2E-08 47.3 1.5 22 35-56 4-25 (171)
332 1uf9_A TT1252 protein; P-loop, 96.6 0.0016 5.6E-08 46.0 3.6 25 32-56 7-31 (203)
333 3jvv_A Twitching mobility prot 96.6 0.0012 4.2E-08 51.3 3.2 21 35-55 125-145 (356)
334 2yz2_A Putative ABC transporte 96.6 0.0011 3.9E-08 49.4 2.9 22 35-56 35-56 (266)
335 3be4_A Adenylate kinase; malar 96.6 0.0014 4.7E-08 47.3 3.1 23 33-55 5-27 (217)
336 1via_A Shikimate kinase; struc 96.6 0.0015 5.1E-08 45.3 3.1 21 35-55 6-26 (175)
337 2pjz_A Hypothetical protein ST 96.5 0.0014 4.8E-08 48.8 3.1 23 35-57 32-54 (263)
338 1zd8_A GTP:AMP phosphotransfer 96.5 0.0014 4.9E-08 47.5 3.1 23 33-55 7-29 (227)
339 1lw7_A Transcriptional regulat 96.5 0.0013 4.6E-08 51.3 3.1 24 33-56 170-193 (365)
340 1gvn_B Zeta; postsegregational 96.5 0.0017 5.8E-08 49.0 3.6 24 32-55 32-55 (287)
341 4ido_A Atlastin-1; GTPase, GTP 96.5 0.0073 2.5E-07 48.3 7.1 24 31-54 65-88 (457)
342 2pt5_A Shikimate kinase, SK; a 96.5 0.0017 5.9E-08 44.5 3.2 21 35-55 2-22 (168)
343 2c95_A Adenylate kinase 1; tra 96.5 0.0018 6.3E-08 45.5 3.4 23 33-55 9-31 (196)
344 2wwf_A Thymidilate kinase, put 96.5 0.0019 6.4E-08 46.1 3.5 23 33-55 10-32 (212)
345 1zak_A Adenylate kinase; ATP:A 96.5 0.0016 5.4E-08 47.0 3.1 22 34-55 6-27 (222)
346 1jbk_A CLPB protein; beta barr 96.5 0.0019 6.5E-08 44.8 3.4 24 33-56 43-66 (195)
347 2v54_A DTMP kinase, thymidylat 96.5 0.0021 7.1E-08 45.5 3.6 24 33-56 4-27 (204)
348 2xb4_A Adenylate kinase; ATP-b 96.5 0.0019 6.3E-08 46.8 3.4 21 35-55 2-22 (223)
349 2x8a_A Nuclear valosin-contain 96.5 0.0016 5.6E-08 48.8 3.2 20 36-55 47-66 (274)
350 1rz3_A Hypothetical protein rb 96.5 0.0024 8E-08 45.4 3.9 24 32-55 21-44 (201)
351 2yvu_A Probable adenylyl-sulfa 96.5 0.0028 9.6E-08 44.3 4.2 24 32-55 12-35 (186)
352 1odf_A YGR205W, hypothetical 3 96.5 0.0024 8.3E-08 48.3 4.1 25 31-55 29-53 (290)
353 3tqc_A Pantothenate kinase; bi 96.5 0.0025 8.4E-08 48.9 4.1 25 31-55 90-114 (321)
354 2ewv_A Twitching motility prot 96.4 0.0018 6.2E-08 50.7 3.3 23 33-55 136-158 (372)
355 3nh6_A ATP-binding cassette SU 96.4 0.0011 3.8E-08 50.5 2.1 23 34-56 81-103 (306)
356 2gza_A Type IV secretion syste 96.4 0.0015 5.3E-08 50.9 2.9 23 34-56 176-198 (361)
357 1ixz_A ATP-dependent metallopr 96.4 0.0019 6.4E-08 47.6 3.2 21 36-56 52-72 (254)
358 1nn5_A Similar to deoxythymidy 96.4 0.002 6.8E-08 46.0 3.2 23 33-55 9-31 (215)
359 1xjc_A MOBB protein homolog; s 96.4 0.0021 7.3E-08 44.5 3.2 22 34-55 5-26 (169)
360 1rj9_A FTSY, signal recognitio 96.4 0.0019 6.5E-08 49.2 3.2 23 33-55 102-124 (304)
361 1z47_A CYSA, putative ABC-tran 96.4 0.0019 6.6E-08 50.2 3.2 22 35-56 43-64 (355)
362 3fvq_A Fe(3+) IONS import ATP- 96.4 0.0018 6.1E-08 50.4 3.0 23 35-57 32-54 (359)
363 2ze6_A Isopentenyl transferase 96.4 0.0021 7.1E-08 47.6 3.2 21 35-55 3-23 (253)
364 2kjq_A DNAA-related protein; s 96.4 0.0013 4.3E-08 44.7 1.9 25 33-57 36-60 (149)
365 2bbs_A Cystic fibrosis transme 96.4 0.0018 6.1E-08 49.0 2.9 22 35-56 66-87 (290)
366 1p9r_A General secretion pathw 96.4 0.0019 6.5E-08 51.4 3.2 23 34-56 168-190 (418)
367 3uc9_A Increased recombination 96.4 0.0016 5.4E-08 47.2 2.4 25 32-56 28-52 (233)
368 2pt7_A CAG-ALFA; ATPase, prote 96.4 0.0015 5.1E-08 50.4 2.4 24 34-57 172-195 (330)
369 1sq5_A Pantothenate kinase; P- 96.4 0.0028 9.4E-08 48.3 3.9 24 32-55 79-102 (308)
370 2p5t_B PEZT; postsegregational 96.4 0.0017 5.9E-08 48.0 2.7 25 31-55 30-54 (253)
371 2yyz_A Sugar ABC transporter, 96.4 0.0021 7E-08 50.1 3.2 22 35-56 31-52 (359)
372 2it1_A 362AA long hypothetical 96.4 0.0022 7.4E-08 50.1 3.2 22 35-56 31-52 (362)
373 2pbr_A DTMP kinase, thymidylat 96.3 0.0026 8.8E-08 44.6 3.4 21 35-55 2-22 (195)
374 3rlf_A Maltose/maltodextrin im 96.3 0.0022 7.6E-08 50.3 3.2 23 35-57 31-53 (381)
375 1gtv_A TMK, thymidylate kinase 96.3 0.00089 3E-08 47.9 0.9 21 35-55 2-22 (214)
376 2z0h_A DTMP kinase, thymidylat 96.3 0.0024 8.2E-08 44.9 3.2 21 35-55 2-22 (197)
377 2oap_1 GSPE-2, type II secreti 96.3 0.0019 6.6E-08 52.7 2.8 24 34-57 261-284 (511)
378 2bwj_A Adenylate kinase 5; pho 96.3 0.0026 8.8E-08 44.8 3.2 23 33-55 12-34 (199)
379 1g29_1 MALK, maltose transport 96.3 0.0023 8E-08 50.1 3.2 23 35-57 31-53 (372)
380 1v43_A Sugar-binding transport 96.3 0.0024 8.2E-08 50.0 3.2 22 35-56 39-60 (372)
381 1e6c_A Shikimate kinase; phosp 96.3 0.0025 8.5E-08 43.9 3.0 21 35-55 4-24 (173)
382 3tui_C Methionine import ATP-b 96.3 0.0024 8.4E-08 49.7 3.2 22 35-56 56-77 (366)
383 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0025 8.6E-08 45.9 3.2 21 35-55 25-45 (235)
384 1qf9_A UMP/CMP kinase, protein 96.3 0.0036 1.2E-07 43.7 3.8 22 34-55 7-28 (194)
385 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0032 1.1E-07 46.7 3.7 22 34-55 5-26 (260)
386 1vht_A Dephospho-COA kinase; s 96.3 0.0033 1.1E-07 45.1 3.6 23 33-55 4-26 (218)
387 3kta_A Chromosome segregation 96.2 0.0028 9.5E-08 44.1 3.0 21 35-55 28-48 (182)
388 2pez_A Bifunctional 3'-phospho 96.2 0.0038 1.3E-07 43.4 3.7 23 33-55 5-27 (179)
389 1iy2_A ATP-dependent metallopr 96.2 0.0028 9.6E-08 47.4 3.2 22 35-56 75-96 (278)
390 3b9q_A Chloroplast SRP recepto 96.2 0.0044 1.5E-07 47.1 4.3 24 32-55 99-122 (302)
391 1zuh_A Shikimate kinase; alpha 96.2 0.0032 1.1E-07 43.2 3.2 21 35-55 9-29 (168)
392 4e22_A Cytidylate kinase; P-lo 96.2 0.0031 1.1E-07 46.5 3.4 22 33-54 27-48 (252)
393 4dzz_A Plasmid partitioning pr 96.2 0.0035 1.2E-07 44.3 3.6 85 83-174 76-162 (206)
394 2iyv_A Shikimate kinase, SK; t 96.2 0.0028 9.6E-08 44.2 3.0 21 35-55 4-24 (184)
395 3d31_A Sulfate/molybdate ABC t 96.2 0.0019 6.6E-08 50.1 2.2 22 35-56 28-49 (348)
396 4eaq_A DTMP kinase, thymidylat 96.2 0.0045 1.5E-07 45.0 4.1 25 32-56 25-49 (229)
397 2p65_A Hypothetical protein PF 96.2 0.0024 8.1E-08 44.2 2.5 24 33-56 43-66 (187)
398 1in4_A RUVB, holliday junction 96.2 0.0028 9.5E-08 48.8 3.1 23 34-56 52-74 (334)
399 3e70_C DPA, signal recognition 96.2 0.0041 1.4E-07 47.8 4.0 83 84-177 213-302 (328)
400 1uj2_A Uridine-cytidine kinase 96.2 0.0036 1.2E-07 46.2 3.4 24 32-55 21-44 (252)
401 2vli_A Antibiotic resistance p 96.2 0.002 7E-08 44.8 2.0 22 34-55 6-27 (183)
402 3bos_A Putative DNA replicatio 96.1 0.0037 1.3E-07 45.2 3.4 23 33-55 52-74 (242)
403 1cr0_A DNA primase/helicase; R 96.1 0.003 1E-07 47.6 3.0 22 35-56 37-58 (296)
404 3gd7_A Fusion complex of cysti 96.1 0.0031 1.1E-07 49.7 3.0 22 35-56 49-70 (390)
405 2cvh_A DNA repair and recombin 96.1 0.0037 1.3E-07 44.7 3.2 21 35-55 22-42 (220)
406 1lv7_A FTSH; alpha/beta domain 96.1 0.0046 1.6E-07 45.6 3.6 23 34-56 46-68 (257)
407 3r20_A Cytidylate kinase; stru 96.1 0.0041 1.4E-07 45.4 3.3 23 33-55 9-31 (233)
408 2npi_A Protein CLP1; CLP1-PCF1 96.1 0.0032 1.1E-07 50.7 2.9 24 33-56 138-161 (460)
409 1m7g_A Adenylylsulfate kinase; 96.1 0.0055 1.9E-07 43.8 3.9 23 33-55 25-47 (211)
410 2vp4_A Deoxynucleoside kinase; 96.0 0.0041 1.4E-07 45.2 3.2 26 31-56 18-43 (230)
411 2yhs_A FTSY, cell division pro 96.0 0.0038 1.3E-07 50.6 3.2 106 83-199 376-500 (503)
412 2w58_A DNAI, primosome compone 96.0 0.0046 1.6E-07 43.8 3.4 23 34-56 55-77 (202)
413 2f6r_A COA synthase, bifunctio 96.0 0.005 1.7E-07 46.3 3.7 24 32-55 74-97 (281)
414 1oxx_K GLCV, glucose, ABC tran 96.0 0.002 6.7E-08 50.1 1.5 23 35-57 33-55 (353)
415 1n0w_A DNA repair protein RAD5 96.0 0.0042 1.4E-07 45.2 3.2 23 34-56 25-47 (243)
416 3nwj_A ATSK2; P loop, shikimat 96.0 0.0043 1.5E-07 45.8 3.1 23 33-55 48-70 (250)
417 2og2_A Putative signal recogni 96.0 0.0067 2.3E-07 47.2 4.2 24 32-55 156-179 (359)
418 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0051 1.7E-07 41.6 3.2 20 36-55 26-45 (149)
419 3n70_A Transport activator; si 95.9 0.0053 1.8E-07 41.2 3.2 24 33-56 24-47 (145)
420 1nij_A Hypothetical protein YJ 95.9 0.003 1E-07 48.4 2.2 24 34-57 5-28 (318)
421 1p5z_B DCK, deoxycytidine kina 95.9 0.003 1E-07 46.9 2.0 24 32-55 23-46 (263)
422 1ltq_A Polynucleotide kinase; 95.9 0.0049 1.7E-07 46.5 3.2 22 34-55 3-24 (301)
423 2obl_A ESCN; ATPase, hydrolase 95.8 0.0054 1.9E-07 47.5 3.2 26 32-57 70-95 (347)
424 3syl_A Protein CBBX; photosynt 95.8 0.0072 2.5E-07 45.7 3.8 24 32-55 66-89 (309)
425 1jr3_A DNA polymerase III subu 95.8 0.0062 2.1E-07 47.3 3.4 22 35-56 40-61 (373)
426 1svm_A Large T antigen; AAA+ f 95.8 0.0056 1.9E-07 48.0 3.2 24 32-55 168-191 (377)
427 3t15_A Ribulose bisphosphate c 95.8 0.0064 2.2E-07 45.9 3.4 25 32-56 35-59 (293)
428 3h4m_A Proteasome-activating n 95.8 0.0068 2.3E-07 45.3 3.4 24 33-56 51-74 (285)
429 2qz4_A Paraplegin; AAA+, SPG7, 95.7 0.0077 2.6E-07 44.3 3.6 23 33-55 39-61 (262)
430 1d2n_A N-ethylmaleimide-sensit 95.7 0.0094 3.2E-07 44.3 4.1 26 31-56 62-87 (272)
431 3b9p_A CG5977-PA, isoform A; A 95.7 0.0071 2.4E-07 45.5 3.4 23 33-55 54-76 (297)
432 1nlf_A Regulatory protein REPA 95.7 0.006 2.1E-07 45.6 3.0 23 33-55 30-52 (279)
433 1tue_A Replication protein E1; 95.7 0.0053 1.8E-07 43.9 2.5 22 34-55 59-80 (212)
434 4fcw_A Chaperone protein CLPB; 95.7 0.01 3.5E-07 44.8 4.2 24 33-56 47-70 (311)
435 2grj_A Dephospho-COA kinase; T 95.7 0.0081 2.8E-07 42.5 3.3 23 33-55 12-34 (192)
436 3euj_A Chromosome partition pr 95.7 0.0068 2.3E-07 49.0 3.2 22 34-55 30-51 (483)
437 1yqt_A RNAse L inhibitor; ATP- 95.6 0.0074 2.5E-07 49.6 3.4 26 32-57 46-71 (538)
438 1q3t_A Cytidylate kinase; nucl 95.6 0.009 3.1E-07 43.5 3.6 25 31-55 14-38 (236)
439 2dpy_A FLII, flagellum-specifi 95.6 0.0074 2.5E-07 48.3 3.2 26 32-57 156-181 (438)
440 3gmt_A Adenylate kinase; ssgci 95.5 0.0098 3.3E-07 43.3 3.4 23 33-55 8-30 (230)
441 3b60_A Lipid A export ATP-bind 95.5 0.007 2.4E-07 50.2 2.9 23 34-56 370-392 (582)
442 3cf0_A Transitional endoplasmi 95.5 0.0095 3.3E-07 45.1 3.4 24 33-56 49-72 (301)
443 3b5x_A Lipid A export ATP-bind 95.5 0.0081 2.8E-07 49.9 3.2 23 34-56 370-392 (582)
444 1l8q_A Chromosomal replication 95.5 0.0084 2.9E-07 45.8 3.1 23 33-55 37-59 (324)
445 3zvl_A Bifunctional polynucleo 95.5 0.029 9.8E-07 44.6 6.2 24 32-55 257-280 (416)
446 2px0_A Flagellar biosynthesis 95.5 0.0083 2.8E-07 45.4 3.0 85 83-177 183-273 (296)
447 2dr3_A UPF0273 protein PH0284; 95.5 0.0088 3E-07 43.5 3.0 21 35-55 25-45 (247)
448 3upu_A ATP-dependent DNA helic 95.4 0.0047 1.6E-07 49.7 1.6 21 35-55 47-67 (459)
449 1c9k_A COBU, adenosylcobinamid 95.4 0.0099 3.4E-07 41.6 3.0 21 36-56 2-22 (180)
450 3ozx_A RNAse L inhibitor; ATP 95.4 0.008 2.7E-07 49.4 2.9 23 35-57 27-49 (538)
451 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0094 3.2E-07 46.5 3.2 21 33-54 24-44 (365)
452 2qby_A CDC6 homolog 1, cell di 95.4 0.0087 3E-07 46.4 3.0 23 33-55 45-67 (386)
453 3ake_A Cytidylate kinase; CMP 95.4 0.011 3.9E-07 41.7 3.4 21 35-55 4-24 (208)
454 1ofh_A ATP-dependent HSL prote 95.4 0.011 3.6E-07 44.6 3.3 23 33-55 50-72 (310)
455 3j16_B RLI1P; ribosome recycli 95.4 0.0093 3.2E-07 49.7 3.2 24 34-57 104-127 (608)
456 1vma_A Cell division protein F 95.4 0.01 3.5E-07 45.2 3.2 86 83-178 187-284 (306)
457 1pzn_A RAD51, DNA repair and r 95.4 0.0091 3.1E-07 46.3 3.0 25 32-56 130-154 (349)
458 1fnn_A CDC6P, cell division co 95.4 0.011 3.7E-07 46.1 3.4 22 35-56 46-67 (389)
459 2qmh_A HPR kinase/phosphorylas 95.4 0.01 3.4E-07 42.2 2.9 24 33-56 34-57 (205)
460 1a5t_A Delta prime, HOLB; zinc 95.3 0.0069 2.4E-07 46.6 2.2 23 35-57 26-48 (334)
461 1yqt_A RNAse L inhibitor; ATP- 95.3 0.011 3.8E-07 48.6 3.4 23 35-57 314-336 (538)
462 3eie_A Vacuolar protein sortin 95.3 0.013 4.5E-07 44.7 3.7 24 32-55 50-73 (322)
463 2b8t_A Thymidine kinase; deoxy 95.3 0.03 1E-06 40.5 5.3 23 33-55 12-34 (223)
464 2ga8_A Hypothetical 39.9 kDa p 95.3 0.017 5.7E-07 44.9 4.1 23 33-55 24-46 (359)
465 3ea0_A ATPase, para family; al 95.3 0.081 2.8E-06 38.3 7.7 86 83-176 119-204 (245)
466 3ozx_A RNAse L inhibitor; ATP 95.2 0.0099 3.4E-07 48.8 2.9 23 35-57 296-318 (538)
467 1xwi_A SKD1 protein; VPS4B, AA 95.2 0.014 4.8E-07 44.7 3.6 25 32-56 44-68 (322)
468 3crm_A TRNA delta(2)-isopenten 95.2 0.012 4.2E-07 45.0 3.2 22 34-55 6-27 (323)
469 3bk7_A ABC transporter ATP-bin 95.2 0.012 4.2E-07 49.1 3.4 23 35-57 384-406 (607)
470 3u61_B DNA polymerase accessor 95.2 0.18 6.2E-06 38.2 9.8 21 36-56 51-71 (324)
471 3bk7_A ABC transporter ATP-bin 95.2 0.011 3.8E-07 49.3 3.1 26 32-57 116-141 (607)
472 2yl4_A ATP-binding cassette SU 95.1 0.0073 2.5E-07 50.3 1.9 22 35-56 372-393 (595)
473 3qks_A DNA double-strand break 95.1 0.014 4.8E-07 41.5 3.2 20 35-54 25-44 (203)
474 3qf4_B Uncharacterized ABC tra 95.1 0.0079 2.7E-07 50.1 2.1 24 33-56 381-404 (598)
475 3d3q_A TRNA delta(2)-isopenten 95.1 0.013 4.5E-07 45.1 3.2 22 34-55 8-29 (340)
476 1sxj_C Activator 1 40 kDa subu 95.1 0.013 4.4E-07 45.1 3.1 22 35-56 48-69 (340)
477 3exa_A TRNA delta(2)-isopenten 95.0 0.016 5.5E-07 44.2 3.3 22 35-56 5-26 (322)
478 4a82_A Cystic fibrosis transme 95.0 0.0071 2.4E-07 50.2 1.5 24 33-56 367-390 (578)
479 2ocp_A DGK, deoxyguanosine kin 95.0 0.018 6.1E-07 42.0 3.5 23 34-56 3-25 (241)
480 3a8t_A Adenylate isopentenyltr 95.0 0.014 4.8E-07 44.9 3.0 23 34-56 41-63 (339)
481 3j16_B RLI1P; ribosome recycli 95.0 0.014 4.9E-07 48.6 3.2 22 36-57 381-402 (608)
482 4b4t_M 26S protease regulatory 95.0 0.018 6.1E-07 46.0 3.6 24 32-55 214-237 (434)
483 3pfi_A Holliday junction ATP-d 95.0 0.018 6E-07 44.2 3.6 24 33-56 55-78 (338)
484 2v1u_A Cell division control p 95.0 0.013 4.4E-07 45.5 2.8 23 33-55 44-66 (387)
485 3qf4_A ABC transporter, ATP-bi 95.0 0.009 3.1E-07 49.7 2.0 23 34-56 370-392 (587)
486 2qen_A Walker-type ATPase; unk 95.0 0.016 5.3E-07 44.4 3.2 23 34-56 32-54 (350)
487 1sxj_D Activator 1 41 kDa subu 94.9 0.016 5.4E-07 44.6 3.2 22 35-56 60-81 (353)
488 2qgz_A Helicase loader, putati 94.9 0.018 6.1E-07 43.8 3.4 23 33-55 152-174 (308)
489 3uk6_A RUVB-like 2; hexameric 94.9 0.016 5.5E-07 44.9 3.2 23 34-56 71-93 (368)
490 3cwq_A Para family chromosome 94.9 0.052 1.8E-06 38.7 5.7 85 83-174 68-153 (209)
491 4b4t_K 26S protease regulatory 94.9 0.019 6.6E-07 45.7 3.6 23 33-55 206-228 (428)
492 2r62_A Cell division protease 94.9 0.0071 2.4E-07 44.8 1.1 22 35-56 46-67 (268)
493 4ag6_A VIRB4 ATPase, type IV s 94.9 0.016 5.5E-07 45.5 3.1 25 32-56 34-58 (392)
494 1um8_A ATP-dependent CLP prote 94.9 0.019 6.5E-07 44.8 3.5 24 33-56 72-95 (376)
495 3pxg_A Negative regulator of g 94.9 0.015 5.1E-07 47.0 2.9 24 33-56 201-224 (468)
496 3lda_A DNA repair protein RAD5 94.8 0.016 5.4E-07 45.8 2.9 21 35-55 180-200 (400)
497 2h92_A Cytidylate kinase; ross 94.8 0.019 6.4E-07 41.1 3.2 22 34-55 4-25 (219)
498 2bjv_A PSP operon transcriptio 94.8 0.019 6.4E-07 42.4 3.2 23 34-56 30-52 (265)
499 3te6_A Regulatory protein SIR3 94.8 0.015 5E-07 44.5 2.6 25 32-56 44-68 (318)
500 3d8b_A Fidgetin-like protein 1 94.8 0.021 7E-07 44.4 3.5 24 32-55 116-139 (357)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=5.4e-39 Score=235.53 Aligned_cols=167 Identities=43% Similarity=0.767 Sum_probs=142.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.+||+|+|.+|||||||+++|..+.+...+.++.+.++..+.+...+ ..+.+++|||+|+++|..++..+++.+|++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~-~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ 89 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLED-RTIRLQLWDTAGLERFRSLIPSYIRDSAAA 89 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSS-CEEEEEEECCSCTTTCGGGHHHHHTTCSEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecc-eEEEEEEEECCCchhhhhHHHHHhccccEE
Confidence 4579999999999999999999999999888888888888777766654 459999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|||++++.+|..+..|+..+.....+++|++||+||+|+.+.+.+..+++..+++.+++.|+++||++|.||+++|+.
T Consensus 90 ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~ 169 (216)
T 4dkx_A 90 VVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRR 169 (216)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877788999999999999888889999999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
|++.+...
T Consensus 170 i~~~i~~~ 177 (216)
T 4dkx_A 170 VAAALPGM 177 (216)
T ss_dssp HHHHC---
T ss_pred HHHHHHhh
Confidence 99988654
No 2
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=7.2e-34 Score=202.73 Aligned_cols=170 Identities=60% Similarity=1.017 Sum_probs=148.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.+..+.....++.+.......+.+.+ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVND-ATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETT-EEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECC-EEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 35679999999999999999999999988777777777766666665543 34899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+.....++.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 167 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFY 167 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHcCCCCC
Q 028884 190 EIAKRLPRPSP 200 (202)
Q Consensus 190 ~l~~~i~~~~~ 200 (202)
+|.+.+.+.+.
T Consensus 168 ~l~~~~~~~~~ 178 (181)
T 2efe_B 168 EIARRLPRVQP 178 (181)
T ss_dssp HHHHTCC----
T ss_pred HHHHHHHhcCC
Confidence 99999987654
No 3
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=3.2e-34 Score=204.03 Aligned_cols=168 Identities=39% Similarity=0.740 Sum_probs=148.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+... +..+.+.+||+||++.+...+..+++.+|
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-GQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-TEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34568999999999999999999999988877666776666666665554 44489999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++..+++...+++++++||+++.|++++|
T Consensus 90 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (179)
T 1z0f_A 90 GALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169 (179)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999888777789999999999997766777888999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028884 189 EEIAKRLPR 197 (202)
Q Consensus 189 ~~l~~~i~~ 197 (202)
++|++.+.+
T Consensus 170 ~~l~~~i~~ 178 (179)
T 1z0f_A 170 LEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhh
Confidence 999998865
No 4
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=9.6e-35 Score=211.18 Aligned_cols=171 Identities=40% Similarity=0.673 Sum_probs=142.1
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
...++.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+. +..+.+.+||+||++.+..++..+++.+
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-GKRVKLQIWDTAGQERFRTITQSYYRSA 102 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEET-TEEEEEEEECCTTCGGGHHHHHHHHTTC
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCcHhHHHHHHHHHhhC
Confidence 444678999999999999999999999988876666776666666666654 4448999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNINQ 186 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i~~ 186 (202)
|++|+|||++++.+++.+..|+..+......+.|++||+||+|+.+.+.+..+++..++...++ +++++||+++.|+++
T Consensus 103 d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~ 182 (201)
T 2hup_A 103 NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182 (201)
T ss_dssp SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHH
Confidence 9999999999999999999999999887667899999999999987667778889999999999 999999999999999
Q ss_pred HHHHHHHHcCCCC
Q 028884 187 LFEEIAKRLPRPS 199 (202)
Q Consensus 187 ~~~~l~~~i~~~~ 199 (202)
+|++|++.+.++.
T Consensus 183 l~~~l~~~i~~~~ 195 (201)
T 2hup_A 183 AFLRVATELIMRH 195 (201)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999886543
No 5
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=7e-34 Score=204.90 Aligned_cols=169 Identities=40% Similarity=0.788 Sum_probs=145.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
....+.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+... +..+.+.+||+||++.+..++..+++.+
T Consensus 16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 94 (191)
T 2a5j_A 16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-GKQIKLQIWDTAGQESFRSITRSYYRGA 94 (191)
T ss_dssp CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-TEEEEEEEECCTTGGGTSCCCHHHHTTC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEECCCchhhhhhHHHHhccC
Confidence 334568999999999999999999999998877777777776666666654 4448999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++
T Consensus 95 d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 174 (191)
T 2a5j_A 95 AGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174 (191)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999998876778999999999999776677788889999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028884 188 FEEIAKRLPR 197 (202)
Q Consensus 188 ~~~l~~~i~~ 197 (202)
|++|++.+.+
T Consensus 175 ~~~l~~~i~~ 184 (191)
T 2a5j_A 175 FINTAKEIYR 184 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 6
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=7.9e-34 Score=204.25 Aligned_cols=167 Identities=38% Similarity=0.668 Sum_probs=147.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+... +..+.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 97 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-DKRIKLQIWDTAGQERYRTITTAYYRGAMG 97 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-TEEEEEEEEECCSCCSSCCSGGGGGTTCSE
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-CeEEEEEEEeCCCcHHHhhhHHHhccCCCE
Confidence 3568999999999999999999999998877777777766665555554 344899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|+
T Consensus 98 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 177 (189)
T 2gf9_A 98 FLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFE 177 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998887667899999999999987677778888999999999999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
+|++.+.+
T Consensus 178 ~l~~~i~~ 185 (189)
T 2gf9_A 178 RLVDVICE 185 (189)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 7
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=1.1e-33 Score=199.45 Aligned_cols=166 Identities=61% Similarity=0.995 Sum_probs=147.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+.....++.+.......+.+.+ ..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAA 82 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETT-EEEEEEEEEECCSGGGGGGHHHHHTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECC-EEEEEEEEeCCCcHHhhhhhHHhccCCCEE
Confidence 4579999999999999999999999888777777777777666666543 348999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||++++.++..+..|+..+.....++.|+++|+||+|+.....+..++...++...+++++++||++|.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~ 162 (170)
T 1r2q_A 83 IVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876778999999999998776677778888999999999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
|.+.+.+
T Consensus 163 i~~~~~~ 169 (170)
T 1r2q_A 163 IAKKLPK 169 (170)
T ss_dssp HHHTSCC
T ss_pred HHHHHhh
Confidence 9998865
No 8
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=4.5e-35 Score=211.13 Aligned_cols=170 Identities=37% Similarity=0.636 Sum_probs=152.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.+..+||+|+|.+|+|||||+++|.++.+.....++.+.......+...+.. +.+.+||+||++.+..++..+++.+|+
T Consensus 20 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (191)
T 3dz8_A 20 FDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKR-VKLQIWDTAGQERYRTITTAYYRGAMG 98 (191)
T ss_dssp EEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTT-EEEEEECHHHHHHCHHHHHHHHTTCCE
T ss_pred cCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEE-EEEEEEeCCChHHHHHHHHHHHccCCE
Confidence 4578999999999999999999999988877777777777777776665555 899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|+
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (191)
T 3dz8_A 99 FILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFE 178 (191)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999999887777899999999999987778888889999999999999999999999999999
Q ss_pred HHHHHcCCCCC
Q 028884 190 EIAKRLPRPSP 200 (202)
Q Consensus 190 ~l~~~i~~~~~ 200 (202)
+|++.+.++..
T Consensus 179 ~l~~~i~~~~~ 189 (191)
T 3dz8_A 179 RLVDAICDKMS 189 (191)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHhcc
Confidence 99998865543
No 9
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=7.3e-34 Score=200.65 Aligned_cols=167 Identities=44% Similarity=0.750 Sum_probs=140.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.++|+|+|.+|+|||||+++|.++.+.....++.+.+.....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 81 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-GKRVNLAIWDTAGQERFHALGPIYYRDSNG 81 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-SCEEEEEEEECCCC-------CCSSTTCSE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEEC-CEEEEEEEEECCCcHhhhhhHHHHhccCCE
Confidence 3568999999999999999999999988877777777776666666654 445899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+++|+|++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|+
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 161 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFL 161 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHH
Confidence 99999999999999999999988776556899999999999987777788889999999999999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
+|.+.+.+
T Consensus 162 ~l~~~~~~ 169 (170)
T 1z08_A 162 DLCKRMIE 169 (170)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhh
Confidence 99998764
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=9.9e-34 Score=204.55 Aligned_cols=168 Identities=42% Similarity=0.735 Sum_probs=151.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.+..++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+.+ ..+.+.+||+||++.+...+..+++.+|+
T Consensus 13 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 91 (196)
T 3tkl_A 13 YDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDG-KTIKLQIWDTAGQERFRTITSSYYRGAHG 91 (196)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETT-EEEEEEEEEECCSGGGCTTHHHHHTTCSE
T ss_pred cccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC-EEEEEEEEECCCcHhhhhhHHHHHhhCCE
Confidence 35789999999999999999999999988887778887777777776644 44889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.....+...+...++...+++++++||+++.|++++|+
T Consensus 92 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 171 (196)
T 3tkl_A 92 IIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFM 171 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999888777899999999999988888888899999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028884 190 EIAKRLPRP 198 (202)
Q Consensus 190 ~l~~~i~~~ 198 (202)
+|++.+.++
T Consensus 172 ~l~~~i~~~ 180 (196)
T 3tkl_A 172 TMAAEIKKR 180 (196)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987654
No 11
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=2.5e-33 Score=197.80 Aligned_cols=166 Identities=52% Similarity=0.903 Sum_probs=148.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.+..+.....++.+.......+...+ ..+.+.+||+||.+.+...+..+++.+|++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQN-ELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETT-EEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECC-eEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 4679999999999999999999999988777777777776666666543 448899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||++++.++..+..|+..+.....+..|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|++
T Consensus 83 i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 162 (170)
T 1z0j_A 83 IIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIE 162 (170)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHH
Confidence 99999999999999999999998877788999999999999877777788888999999999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
|.+.+.+
T Consensus 163 i~~~i~~ 169 (170)
T 1z0j_A 163 ISRRIPS 169 (170)
T ss_dssp HHHHCCC
T ss_pred HHHHHhc
Confidence 9998864
No 12
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=198.75 Aligned_cols=166 Identities=54% Similarity=0.907 Sum_probs=146.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.++|+|+|.+|+|||||+++|.++.+.....++.+.+.....+.+. +..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-EHTVKFEIWDTAGQERFASLAPXYYRNAQAAL 80 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCChhhhhhhhhhhccCcEEE
Confidence 46899999999999999999999988877777777777666666654 44589999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC---CCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK---REVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
+|+|++++.++..+..|+..+......+.|+++|+||+|+.+. ..+..++...++...+++++++||+++.|++++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 160 (170)
T 1ek0_A 81 VVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVF 160 (170)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHH
T ss_pred EEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 9999999999999999999988876778999999999998655 5677788888888899999999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
++|.+.+.++
T Consensus 161 ~~l~~~i~~k 170 (170)
T 1ek0_A 161 LGIGEKIPLK 170 (170)
T ss_dssp HHHHTTSCCC
T ss_pred HHHHHHHhhC
Confidence 9999988653
No 13
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=6.6e-34 Score=203.44 Aligned_cols=166 Identities=40% Similarity=0.747 Sum_probs=119.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
++.++|+|+|.+|+|||||+++|.++.+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 6 DYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-GKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp SEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEET-TEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 568999999999999999999999888776667777766666666653 4458999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|++
T Consensus 85 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 164 (183)
T 2fu5_C 85 MLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFT 164 (183)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999988876678999999999999877777888889999999999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
|.+.+.+
T Consensus 165 l~~~i~~ 171 (183)
T 2fu5_C 165 LARDIKA 171 (183)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987753
No 14
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=9e-34 Score=202.74 Aligned_cols=169 Identities=30% Similarity=0.472 Sum_probs=145.9
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 106 (202)
.....+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...... ++..+.+.+||+||++.+..++..+++.
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 89 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAMREQYMRT 89 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSSHHHHHHH
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHHHHHHHhc
Confidence 34456789999999999999999999999887777776666555 444444 4555889999999999999999999999
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccC-CCCCH
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK-TADNI 184 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~~i 184 (202)
+|++|+|||++++.++..+..|+..+... ...++|+++|+||+|+.+...+..++...++...+++++++||+ ++.|+
T Consensus 90 ~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v 169 (183)
T 3kkq_A 90 GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNV 169 (183)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCH
Confidence 99999999999999999999999888653 55689999999999998888888899999999999999999999 99999
Q ss_pred HHHHHHHHHHcCC
Q 028884 185 NQLFEEIAKRLPR 197 (202)
Q Consensus 185 ~~~~~~l~~~i~~ 197 (202)
+++|++|.+.+.+
T Consensus 170 ~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 170 DKTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988754
No 15
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.5e-33 Score=199.77 Aligned_cols=172 Identities=41% Similarity=0.704 Sum_probs=139.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 106 (202)
...++.++|+|+|.+|+|||||+++|.++.+.. .+.++.+.++....+.. ++..+.+.+||+||++.+...+..+++.
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~ 83 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQERFRSVTHAYYRD 83 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC--------CCGGG
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHHHHHHHHHHccC
Confidence 344678999999999999999999999988743 44566666665555555 4445899999999999999999999999
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
+|++|+|+|++++.++..+..|+..+......+.|+++|+||+|+.....+..++...++...+++++++||+++.|+++
T Consensus 84 ~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 163 (180)
T 2g6b_A 84 AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDL 163 (180)
T ss_dssp CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 99999999999999999999999998887667899999999999988777788888889999999999999999999999
Q ss_pred HHHHHHHHcCCCCC
Q 028884 187 LFEEIAKRLPRPSP 200 (202)
Q Consensus 187 ~~~~l~~~i~~~~~ 200 (202)
+|++|.+.+.+++.
T Consensus 164 l~~~l~~~~~~~~~ 177 (180)
T 2g6b_A 164 AFTAIAKELKRRSM 177 (180)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999876543
No 16
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.3e-33 Score=205.19 Aligned_cols=168 Identities=42% Similarity=0.788 Sum_probs=149.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..++.++|+|+|.+|+|||||+++|.++.+.....++.+.++....+.+. +..+.+.+||+||.+.+..++..+++.+|
T Consensus 22 ~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (201)
T 2ew1_A 22 DYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-GEKVKLQIWDTAGQERFRSITQSYYRSAN 100 (201)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHGGGSTTCS
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCcHHHHHHHHHHHhcCC
Confidence 34678999999999999999999999998877777777777766666664 44489999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|
T Consensus 101 ~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~ 180 (201)
T 2ew1_A 101 ALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180 (201)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999988766789999999999997766777888888888899999999999999999999
Q ss_pred HHHHHHcCC
Q 028884 189 EEIAKRLPR 197 (202)
Q Consensus 189 ~~l~~~i~~ 197 (202)
++|++.+.+
T Consensus 181 ~~l~~~i~~ 189 (201)
T 2ew1_A 181 LDLACRLIS 189 (201)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887754
No 17
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-33 Score=203.19 Aligned_cols=170 Identities=54% Similarity=0.880 Sum_probs=147.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.++|+|+|.+|+|||||+++|.+..+.....++.+.......+...+ ..+.+.+||+||.+.+...+..+++.+|+
T Consensus 20 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 98 (192)
T 2fg5_A 20 AIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGN-ELHKFLIWDTAGQERFHSLAPMYYRGSAA 98 (192)
T ss_dssp -CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSS-SEEEEEEEEECCSGGGGGGTHHHHTTCSE
T ss_pred cCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCC-EEEEEEEEcCCCchhhHhhhHHhhccCCE
Confidence 45689999999999999999999999887766777777776666665543 44899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+.+.+..++...++...+++++++||+++.|++++|+
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 178 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQ 178 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHH
Confidence 99999999999999999999999887667899999999999976667778889999999999999999999999999999
Q ss_pred HHHHHcCCCCC
Q 028884 190 EIAKRLPRPSP 200 (202)
Q Consensus 190 ~l~~~i~~~~~ 200 (202)
+|.+.+.+..+
T Consensus 179 ~l~~~i~~~~~ 189 (192)
T 2fg5_A 179 GISRQIPPLDP 189 (192)
T ss_dssp HHHHTCC----
T ss_pred HHHHHHHhhCC
Confidence 99999876643
No 18
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=207.94 Aligned_cols=170 Identities=39% Similarity=0.756 Sum_probs=142.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..+..++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+..++..+++.+|
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 87 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-GKRIKAQIWDTAGQERYRAITSAYYRGAV 87 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGTTTCC
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEECCCccchhhhHHHHhccCC
Confidence 34678999999999999999999999998877777777777766666654 44489999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++|+|||++++.++..+..|+..+......++|++||+||+|+.....+..++...++...+++++++||+++.|++++|
T Consensus 88 ~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 167 (223)
T 3cpj_B 88 GALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167 (223)
T ss_dssp EEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999999999999999987766789999999999998766777888889999999999999999999999999
Q ss_pred HHHHHHcCCCC
Q 028884 189 EEIAKRLPRPS 199 (202)
Q Consensus 189 ~~l~~~i~~~~ 199 (202)
++|++.+.+..
T Consensus 168 ~~l~~~i~~~~ 178 (223)
T 3cpj_B 168 EELINTIYQKV 178 (223)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 19
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=2.7e-33 Score=200.64 Aligned_cols=167 Identities=38% Similarity=0.709 Sum_probs=148.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+... +..+.+.+||+||++.+...+..+++.+|+
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-GKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 4568999999999999999999999998877777777766666666554 444799999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.....+...+...++...+++++++||+++.|++++|+
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 165 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFV 165 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHH
Confidence 99999999999999999999988877667899999999999977667778888899999999999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
+|++.+.+
T Consensus 166 ~l~~~~~~ 173 (186)
T 2bme_A 166 QCARKILN 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 20
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=6.8e-33 Score=201.92 Aligned_cols=167 Identities=40% Similarity=0.725 Sum_probs=149.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-GKTVKLQIWDTAGQERFRTITSSYYRGSHG 83 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-TEEEEEEEECCTTTTTTTCCCGGGGTTCSE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-CEEEEEEEEeCCChHHHHHHHHHhccCCCE
Confidence 4568999999999999999999999998877777777777766666654 444899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.....+..++...++...+++++++||++|.|++++|+
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 163 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFL 163 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999999887667899999999999987777788888899999999999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
+|.+.+.+
T Consensus 164 ~l~~~i~~ 171 (206)
T 2bcg_Y 164 TMARQIKE 171 (206)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 21
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=202.80 Aligned_cols=169 Identities=43% Similarity=0.764 Sum_probs=148.5
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
...++.++|+|+|.+|+|||||+++|.+..+...+.++.+..+....+... +..+.+.+||+||.+.+...+..+++.+
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 98 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-TAAVKAQIWDTAGLERYRAITSAYYRGA 98 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-TEEEEEEEEEESCCCTTCTTHHHHHTTC
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhhHHHhccC
Confidence 445678999999999999999999999998877777777776666666554 4448999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.....+..++...++...+++++++||+++.|++++
T Consensus 99 d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 178 (193)
T 2oil_A 99 VGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178 (193)
T ss_dssp CEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988776678999999999999776677788888999999999999999999999999
Q ss_pred HHHHHHHcCC
Q 028884 188 FEEIAKRLPR 197 (202)
Q Consensus 188 ~~~l~~~i~~ 197 (202)
|++|.+.+.+
T Consensus 179 ~~~l~~~i~~ 188 (193)
T 2oil_A 179 FETVLKEIFA 188 (193)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987754
No 22
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=4e-33 Score=198.68 Aligned_cols=167 Identities=38% Similarity=0.689 Sum_probs=145.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..++.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+. +..+.+.+||+||++.+...+..+++.+|
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 83 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-GEKVKLQIWDTAGQERFRTITSTYYRGTH 83 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-TEEEEEEEEEETTGGGCSSCCGGGGTTCS
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-CEEEEEEEEcCCCchhhhhhHHHHhccCC
Confidence 34578999999999999999999999988877777777777766666664 44489999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++|+|||++++.++..+..|+..+... .++.|+++|+||+|+.+...+...+...++...+++++++||++|.|++++|
T Consensus 84 ~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (181)
T 3tw8_B 84 GVIVVYDVTSAESFVNVKRWLHEINQN-CDDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162 (181)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHH-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHh-CCCCCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHH
Confidence 999999999999999999999998776 4579999999999998877788888999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028884 189 EEIAKRLPR 197 (202)
Q Consensus 189 ~~l~~~i~~ 197 (202)
++|.+.+.+
T Consensus 163 ~~l~~~~~~ 171 (181)
T 3tw8_B 163 NCITELVLR 171 (181)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.1e-33 Score=198.21 Aligned_cols=166 Identities=42% Similarity=0.770 Sum_probs=140.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
..++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+... +..+.+.+||+||++.+...+..+++.+|++|
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 46899999999999999999999988877777777766666666554 44489999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
+|+|++++.++..+..|+..+......+.|+++|+||+|+ .......++...+++..+++++++||+++.|++++|++|
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l 159 (170)
T 1g16_A 81 LVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTL 159 (170)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHH
Confidence 9999999999999999999988876678999999999998 444566778888898999999999999999999999999
Q ss_pred HHHcCCCC
Q 028884 192 AKRLPRPS 199 (202)
Q Consensus 192 ~~~i~~~~ 199 (202)
.+.+.++.
T Consensus 160 ~~~~~~~~ 167 (170)
T 1g16_A 160 AKLIQEKI 167 (170)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHh
Confidence 99887653
No 24
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=9.4e-34 Score=201.61 Aligned_cols=171 Identities=30% Similarity=0.475 Sum_probs=147.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+.++..+.+.+||+||++.+...+..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 46799999999999999999999998876556667766777777777665568999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCC--CCCe-EEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGS--PDIV-MALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~p-~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
|+|||++++.++..+..|+..+..... ...| +++|+||+|+.+...+..++...++...+++++++||++|.|++++
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (178)
T 2hxs_A 84 LLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLC 163 (178)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHH
Confidence 999999999999999999988876421 2344 8999999999776677778888999999999999999999999999
Q ss_pred HHHHHHHcCCCCCC
Q 028884 188 FEEIAKRLPRPSPS 201 (202)
Q Consensus 188 ~~~l~~~i~~~~~~ 201 (202)
|++|.+.+.+.+..
T Consensus 164 ~~~l~~~~~~~~~~ 177 (178)
T 2hxs_A 164 FQKVAAEILGIKLN 177 (178)
T ss_dssp HHHHHHHHTTCCCC
T ss_pred HHHHHHHHHhhhhc
Confidence 99999999887654
No 25
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=2.7e-33 Score=199.93 Aligned_cols=168 Identities=30% Similarity=0.454 Sum_probs=144.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.. ++..+.+.+||+||++.+..++..+++.+|++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 81 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITV-NGQEYHLQLVDTAGQDEYSIFPQTYSIDINGY 81 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCTTCCCCGGGTTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHHHhcCCEE
Confidence 4689999999999999999999998887777776666655 444444 45558899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
++|||++++.+++.+..|+..+... ...++|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|+
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~ 161 (181)
T 3t5g_A 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFR 161 (181)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHH
Confidence 9999999999999999999888655 445899999999999988888889999999999999999999999999999999
Q ss_pred HHHHHcCCCCC
Q 028884 190 EIAKRLPRPSP 200 (202)
Q Consensus 190 ~l~~~i~~~~~ 200 (202)
+|++.+.+.+.
T Consensus 162 ~l~~~~~~~~~ 172 (181)
T 3t5g_A 162 RIILEAEKMDG 172 (181)
T ss_dssp HHHHHHHTC--
T ss_pred HHHHHHHHhcC
Confidence 99999877653
No 26
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-33 Score=203.78 Aligned_cols=167 Identities=39% Similarity=0.730 Sum_probs=138.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ 100 (200)
T 2o52_A 22 SDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG-GKTVKLQIWDTAGQERFRSVTRSYYRGAAG 100 (200)
T ss_dssp CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEET-TEEEEEEEECCTTHHHHSCCCHHHHTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEEC-CeeeEEEEEcCCCcHhHHHHHHHHhccCCE
Confidence 3568999999999999999999999988877777777766666666554 444899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.....+...+...++...+++++++||++|.|++++|+
T Consensus 101 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~ 180 (200)
T 2o52_A 101 ALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFL 180 (200)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHH
Confidence 99999999999999999999998877667899999999999977667778888899999999999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
+|++.+.+
T Consensus 181 ~l~~~i~~ 188 (200)
T 2o52_A 181 KCARTILN 188 (200)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987754
No 27
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=8.7e-33 Score=200.86 Aligned_cols=166 Identities=36% Similarity=0.630 Sum_probs=146.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+..+....+... +..+.+.+||+||.+.+...+..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-DKRIKLQIWDTAGLERYRTITTAYYRGAMG 83 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHTTGGGCSE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC-CeEEEEEEEECCCchhhcchHHHhhcCCCE
Confidence 3568999999999999999999999988877777777766666655554 444899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|+
T Consensus 84 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 163 (203)
T 1zbd_A 84 FILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFE 163 (203)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHH
Confidence 99999999999999999999998877667899999999999987777788888999999999999999999999999999
Q ss_pred HHHHHcC
Q 028884 190 EIAKRLP 196 (202)
Q Consensus 190 ~l~~~i~ 196 (202)
+|.+.+.
T Consensus 164 ~l~~~i~ 170 (203)
T 1zbd_A 164 RLVDVIC 170 (203)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988764
No 28
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=205.24 Aligned_cols=169 Identities=33% Similarity=0.582 Sum_probs=135.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
...+.++|+|+|.+|+|||||+++|.++.+.....++.+.++....+.+. +..+.+.+||+||.+.+...+..+++.+|
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 102 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-GERTVLQLWDTAGQERFRSIAKSYFRKAD 102 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEET-TEEEEEEEEECTTCTTCHHHHHHHHHHCS
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-CEEEEEEEEECCCCcchhhhHHHHHhhCC
Confidence 34568999999999999999999999988776666666666655556554 44488999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC------CCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH------EKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~------~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+. ....+..++...++...+++++++||++|.
T Consensus 103 ~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~ 182 (199)
T 2p5s_A 103 GVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182 (199)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCT
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCC
Confidence 99999999999999999999999887766789999999999985 345667788888999999999999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q 028884 183 NINQLFEEIAKRLPRP 198 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~~ 198 (202)
|++++|++|++.+.++
T Consensus 183 gv~el~~~l~~~i~~~ 198 (199)
T 2p5s_A 183 NIVEAVLHLAREVKKR 198 (199)
T ss_dssp THHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999999998764
No 29
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=8.8e-36 Score=216.23 Aligned_cols=197 Identities=39% Similarity=0.648 Sum_probs=141.1
Q ss_pred CCCCCCCCCccCCCCCCCCCcccCCCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCC
Q 028884 1 MGCSGSVPARSSGQSGGLNNLENAGSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS 80 (202)
Q Consensus 1 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (202)
||-+...+...+.+.......+........++.++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+. +
T Consensus 1 ~~~~~~~~~~~~~~~~~~~G~pm~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (199)
T 3l0i_B 1 MGSSHHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-G 79 (199)
T ss_dssp ------------------------CC-CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-T
T ss_pred CCcccCCCCCCCCCcCccCCCcccccCcccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-C
Confidence 554333333333443333333333444455778999999999999999999999988777666777777766666664 4
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChH
Q 028884 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ 160 (202)
Q Consensus 81 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 160 (202)
..+.+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+...
T Consensus 80 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~~~ 159 (199)
T 3l0i_B 80 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT 159 (199)
T ss_dssp EEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCCSC
T ss_pred EEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCCHH
Confidence 44889999999999999999999999999999999999999999999999998876778999999999999877777777
Q ss_pred HHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 161 DGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 161 ~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+...++...+++++++||+++.|++++|++|++.+.++
T Consensus 160 ~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~~ 197 (199)
T 3l0i_B 160 TAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKR 197 (199)
T ss_dssp C-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTTT
T ss_pred HHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 78888999999999999999999999999999988765
No 30
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.1e-33 Score=206.17 Aligned_cols=168 Identities=35% Similarity=0.629 Sum_probs=144.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc---------EEEEEEEeCCChhhhhhcc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST---------TVKFEIWDTAGQERYAALA 100 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~i~D~~G~~~~~~~~ 100 (202)
.++.++|+|+|.+|+|||||+++|.+..+...+.++.+.++....+.+.+.. .+.+.+||+||++.+...+
T Consensus 22 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 22 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred cceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 4678999999999999999999999988766666666666655555555431 4789999999999999999
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccC
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 179 (202)
..+++.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+.....+..++...++...+++++++||+
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~ 181 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAA 181 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTT
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECC
Confidence 9999999999999999999999999999887765533 689999999999997766777888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHcCC
Q 028884 180 TADNINQLFEEIAKRLPR 197 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~ 197 (202)
++.|++++|++|.+.+.+
T Consensus 182 ~g~gi~~l~~~l~~~i~~ 199 (217)
T 2f7s_A 182 TGQNVEKAVETLLDLIMK 199 (217)
T ss_dssp TTBTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 31
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.4e-33 Score=204.90 Aligned_cols=172 Identities=31% Similarity=0.475 Sum_probs=141.2
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 105 (202)
.+.+..+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+... +..+.+.+||+||.+.+..++..+++
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~ 94 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLG-KDEFHLHLVDTAGQDEYSILPYSFII 94 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC-----CEEEEEEEECCCCTTCCCCGGGTT
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEEC-CEEEEEEEEECCCccchHHHHHHHHh
Confidence 334456789999999999999999999999988777666666554 3333333 33488999999999999999999999
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
.+|++|+|||++++.++..+..|+..+... ...++|+++|+||+|+.....+...+...++...+++++++||++|.|+
T Consensus 95 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v 174 (201)
T 3oes_A 95 GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLT 174 (201)
T ss_dssp TCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHH
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCH
Confidence 999999999999999999999999988765 3457899999999999887888888999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 028884 185 NQLFEEIAKRLPRPS 199 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~ 199 (202)
+++|++|++.+.+..
T Consensus 175 ~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 175 QGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999886554
No 32
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=204.09 Aligned_cols=168 Identities=35% Similarity=0.678 Sum_probs=140.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
+....++|+|+|.+|+|||||+++|.++.+.....++.+.+.....+.+. +..+.+.+||+||.+.+...+..+++.+|
T Consensus 22 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d 100 (192)
T 2il1_A 22 PADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-GKKIRLQIWDTAGQERFNSITSAYYRSAK 100 (192)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEET-TEEEEEEEEEECCSGGGHHHHHHHHHHCS
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-CeEEEEEEEeCCCcHHHHHHHHHHhcCCC
Confidence 34678999999999999999999999988777777777777766666654 44489999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-CCeEEEeccCCCCCHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQL 187 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~ 187 (202)
++|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+..++...++... +.+++++||++|.|++++
T Consensus 101 ~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l 180 (192)
T 2il1_A 101 GIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180 (192)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHH
Confidence 9999999999999999999999888876678999999999999776677778888888874 889999999999999999
Q ss_pred HHHHHHHcCC
Q 028884 188 FEEIAKRLPR 197 (202)
Q Consensus 188 ~~~l~~~i~~ 197 (202)
|++|.+.+.+
T Consensus 181 ~~~l~~~i~~ 190 (192)
T 2il1_A 181 FLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988754
No 33
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=4.6e-33 Score=198.02 Aligned_cols=167 Identities=44% Similarity=0.779 Sum_probs=146.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+.+. +..+.+.+||+||++.+...+..+++.+|++
T Consensus 12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-DRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-TEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC-CeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 356999999999999999999999988877777777777766666654 4447899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+...+...++...+++++++||+++.|++++|++
T Consensus 91 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 170 (179)
T 2y8e_A 91 VVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRR 170 (179)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999999999999887765678999999999999877777788888899999999999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
|.+.+.+.
T Consensus 171 l~~~~~~~ 178 (179)
T 2y8e_A 171 VAAALPGM 178 (179)
T ss_dssp HHHTCC--
T ss_pred HHHHHhhc
Confidence 99988653
No 34
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=6.7e-33 Score=199.37 Aligned_cols=169 Identities=35% Similarity=0.685 Sum_probs=142.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh-hcccccccC
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA-ALAPLYYRG 106 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-~~~~~~~~~ 106 (202)
.+..+.++|+|+|.+|+|||||+++|.++.+.....++.+.++....+.+. +..+.+.+||+||.+.+. .++..+++.
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-GERIKIQLWDTAGQERFRKSMVQHYYRN 93 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-TEEEEEEEEECCCSHHHHTTTHHHHHTT
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEC-CEEEEEEEEECCCchhhhhhhhHHHhcC
Confidence 334568999999999999999999999998877777777777766666654 344899999999999998 888899999
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC---C
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA---D 182 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~---~ 182 (202)
+|++|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+...+..++...++...+++++++||+++ .
T Consensus 94 ~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~ 173 (189)
T 1z06_A 94 VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173 (189)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGS
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCccc
Confidence 999999999999999999999999887763 568999999999999777777788889999999999999999999 9
Q ss_pred CHHHHHHHHHHHcCC
Q 028884 183 NINQLFEEIAKRLPR 197 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~ 197 (202)
|+.++|++|++.+.+
T Consensus 174 ~i~~l~~~l~~~i~~ 188 (189)
T 1z06_A 174 HVEAIFMTLAHKLKS 188 (189)
T ss_dssp CHHHHHHHHC-----
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999988754
No 35
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=3.9e-33 Score=196.46 Aligned_cols=165 Identities=32% Similarity=0.586 Sum_probs=145.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+..++|+|+|.+|+|||||+++|.++.+...+.++.+.+.....+... +..+.+.+||+||++.+..++..+++.+|++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-DEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-TEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEEC-CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 457999999999999999999999988877777777777766666654 3448999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|||++++.++..+..|+..+.... .+.|+++|+||+|+.+...+..++...++...+++++++|++++.|++++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~ 160 (168)
T 1z2a_A 82 VLVFSTTDRESFEAISSWREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKY 160 (168)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHH-CSCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHH
Confidence 99999999999999999998887663 67899999999999876677788888999999999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
|.+.+.+
T Consensus 161 l~~~~~~ 167 (168)
T 1z2a_A 161 LAEKHLQ 167 (168)
T ss_dssp HHHHHHC
T ss_pred HHHHHhh
Confidence 9988754
No 36
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=202.25 Aligned_cols=173 Identities=27% Similarity=0.326 Sum_probs=138.9
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccc
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYY 104 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~ 104 (202)
...+....++|+|+|.+|+|||||+++|.+........++.+.+.....+.+ ++..+.+.+||++|.+.+.. ++..++
T Consensus 16 ~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 94 (195)
T 3cbq_A 16 FQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAGGWLRDHCL 94 (195)
T ss_dssp ------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGGHHHHHHHH
T ss_pred CCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEE-CCEEEEEEEEecCCCccchhhhHHHhh
Confidence 4444567899999999999999999999764433233344444444555554 44558999999999987664 777788
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
+.+|++|+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++...+++++++||+++.|
T Consensus 95 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~ 174 (195)
T 3cbq_A 95 QTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHN 174 (195)
T ss_dssp HHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBS
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCC
Confidence 89999999999999999999999999887653 35899999999999987777888888999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 028884 184 INQLFEEIAKRLPRPS 199 (202)
Q Consensus 184 i~~~~~~l~~~i~~~~ 199 (202)
++++|++|++.+.+++
T Consensus 175 v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 175 TRELFEGAVRQIRLRR 190 (195)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 37
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=2.8e-32 Score=196.33 Aligned_cols=169 Identities=31% Similarity=0.599 Sum_probs=146.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEE-EEEEEecCC--------cEEEEEEEeCCChhhhhhc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL-SQTIALQDS--------TTVKFEIWDTAGQERYAAL 99 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~--------~~~~~~i~D~~G~~~~~~~ 99 (202)
..++.++|+|+|.+|+|||||+++|.++.+.....++.+.++. ...+...+. ..+.+.+||+||++.+...
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 86 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSL 86 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHH
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHH
Confidence 4567899999999999999999999998887777777777665 444444433 1589999999999999999
Q ss_pred ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEecc
Q 028884 100 APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 100 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
+..+++.+|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+...+..++...++...+++++++||
T Consensus 87 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 166 (195)
T 3bc1_A 87 TTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSA 166 (195)
T ss_dssp HHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEEC
Confidence 99999999999999999999999999999998877643 68999999999999776677788888999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcCC
Q 028884 179 KTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 179 ~~~~~i~~~~~~l~~~i~~ 197 (202)
+++.|++++|++|.+.+.+
T Consensus 167 ~~~~~v~~l~~~l~~~~~~ 185 (195)
T 3bc1_A 167 ANGTNISHAIEMLLDLIMK 185 (195)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999987754
No 38
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=6.3e-33 Score=195.74 Aligned_cols=165 Identities=28% Similarity=0.353 Sum_probs=129.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccccCccEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYRGAAVAV 111 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~~i 111 (202)
.+||+|+|.+|+|||||+++|.+........++.+.+.....+.+ ++..+.+.+||++|.+.+.. ++..+++.+|+++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEE-TTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 589999999999999999999987766555555555555555555 44458999999999998875 7777888999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+|||++++.++..+..|+..+.... ..++|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~ 160 (169)
T 3q85_A 81 IVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEG 160 (169)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHH
T ss_pred EEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHH
Confidence 9999999999999999999887763 348999999999999877788889999999999999999999999999999999
Q ss_pred HHHHcCCC
Q 028884 191 IAKRLPRP 198 (202)
Q Consensus 191 l~~~i~~~ 198 (202)
|++.+..+
T Consensus 161 l~~~i~~~ 168 (169)
T 3q85_A 161 AVRQIRLR 168 (169)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99988654
No 39
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1e-32 Score=202.33 Aligned_cols=169 Identities=24% Similarity=0.476 Sum_probs=141.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
.+....+||+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.. ++..+.+.+||++|++.+..++..+++.+
T Consensus 22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 99 (214)
T 3q3j_B 22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLET-EEQRVELSLWDTSGSPYYDNVRPLCYSDS 99 (214)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC---CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHHcCCC
Confidence 3445689999999999999999999999988777777766655 333333 34458999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHH-HHHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eE
Q 028884 108 AVAVVVYDITSPDSFNK-AQYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FF 173 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~ 173 (202)
|++|+|||++++.++.. +..|+..+... .++.|+++|+||+|+.+. +.+..+++..++...++ ++
T Consensus 100 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 100 DAVLLCFDISRPETVDSALKKWRTEILDY-CPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp SEEEEEEETTCTHHHHHHHTHHHHHHHHH-CTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred eEEEEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 99999999999999998 69999999877 468999999999998653 56788899999999999 99
Q ss_pred EEeccCCCCC-HHHHHHHHHHHcCCCC
Q 028884 174 IETSAKTADN-INQLFEEIAKRLPRPS 199 (202)
Q Consensus 174 ~~~s~~~~~~-i~~~~~~l~~~i~~~~ 199 (202)
+++||++|.| ++++|++|++.+.++.
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccC
Confidence 9999999998 9999999999887654
No 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=3.4e-32 Score=193.40 Aligned_cols=167 Identities=33% Similarity=0.626 Sum_probs=140.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.++.+.....++.+.+.....+.+. +..+.+.+||+||++.+...+..+++.+|+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 82 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-GHFVTMQIWDTAGQERFRSLRTPFYRGSDC 82 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-TEEEEEEEEECCCCGGGHHHHGGGGTTCSE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEEC-CEEEEEEEEeCCCchhhhhhHHHHHhcCCE
Confidence 3568999999999999999999999988877777777776666666654 444899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCCCChHHHHHHHH-HcCCeEEEeccCCCCCH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTADNI 184 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i 184 (202)
+++|||++++.++..+..|+..+..... .+.|+++|+||+|+. ......++...++. ..+++++++||++|.|+
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 161 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNV 161 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988876533 678999999999987 45566778888887 56788999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028884 185 NQLFEEIAKRLPRP 198 (202)
Q Consensus 185 ~~~~~~l~~~i~~~ 198 (202)
+++|++|++.+.+.
T Consensus 162 ~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 162 AAAFEEAVRRVLAT 175 (177)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988654
No 41
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=3.4e-32 Score=196.46 Aligned_cols=169 Identities=29% Similarity=0.536 Sum_probs=144.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
...+.++|+|+|.+|+|||||+++|.++.+...+.++.+..+.. .+.. ++..+.+.+||+||++.+..++..+++.+|
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH-VMKY-KNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEE-TTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE-EEEE-CCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34568999999999999999999999998876666666555543 3333 455588999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC--CCCChHHHHHHHHHcCCe-EEEeccCCCCCH
Q 028884 109 VAVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK--REVPAQDGIEYAEKNGMF-FIETSAKTADNI 184 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~i 184 (202)
++|+|||++++.++..+ ..|+..+... ..+.|+++|+||+|+.+. ..+..++...++...++. ++++||++|.|+
T Consensus 97 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 175 (194)
T 3reg_A 97 VVLLCFAVNNRTSFDNISTKWEPEIKHY-IDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGL 175 (194)
T ss_dssp EEEEEEETTCHHHHHHHHHTHHHHHHHH-CTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCH
Confidence 99999999999999987 7888888766 467999999999998753 567788899999999988 999999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 028884 185 NQLFEEIAKRLPRPSP 200 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~~ 200 (202)
+++|++|++.+.+++.
T Consensus 176 ~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 176 NEVFEKSVDCIFSNKP 191 (194)
T ss_dssp HHHHHHHHHHHHCSCC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999877654
No 42
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=6.4e-33 Score=197.77 Aligned_cols=169 Identities=36% Similarity=0.643 Sum_probs=132.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+.++..+.+.+||+||++.+...+..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 45689999999999999999999999888777777777777677776664555899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCC-CCCChHHHHHHHH-HcCCeEEEeccCCCCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEK-REVPAQDGIEYAE-KNGMFFIETSAKTADN 183 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~ 183 (202)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+... ..+..++...++. ..+.+++++||++|.|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~g 164 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAIN 164 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBS
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCC
Confidence 9999999999999999999988876532 68899999999998543 4456777888887 4678899999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028884 184 INQLFEEIAKRLPRP 198 (202)
Q Consensus 184 i~~~~~~l~~~i~~~ 198 (202)
++++|++|.+.+.++
T Consensus 165 i~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 165 VDTAFEEIARSALQQ 179 (182)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999887644
No 43
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=199.14 Aligned_cols=165 Identities=27% Similarity=0.461 Sum_probs=137.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.. ++..+.+.+||++|++.+..+ ..+++.+|+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~ 94 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETV-DHQPVHLRVMDTADLDTPRNC-ERYLNWAHA 94 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC---CCCT-HHHHTTCSE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEE-CCEEEEEEEEECCCCCcchhH-HHHHhhCCE
Confidence 35689999999999999999999999987776676666554 233333 445589999999999988765 568899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcC---CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEecc-CCCCCHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHG---SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSA-KTADNIN 185 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~~i~ 185 (202)
+|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+...+.+..+++..++...+++++++|| +++.|++
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQ 174 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHH
Confidence 999999999999999999999887652 258999999999999777778888899999999999999999 8999999
Q ss_pred HHHHHHHHHcCC
Q 028884 186 QLFEEIAKRLPR 197 (202)
Q Consensus 186 ~~~~~l~~~i~~ 197 (202)
++|+.|++.+.+
T Consensus 175 ~lf~~l~~~i~~ 186 (187)
T 3c5c_A 175 HVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 44
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=2.2e-32 Score=196.04 Aligned_cols=164 Identities=18% Similarity=0.316 Sum_probs=136.8
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
....+.+||+|+|.+|+|||||+++|.++.+...+.++. ..+ ...+.+ ++..+.+.+||++|++.+. +++.+
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~-~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~-----~~~~~ 86 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG-GRF-KKEIVV-DGQSYLLLIRDEGGPPELQ-----FAAWV 86 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC-EEE-EEEEEE-TTEEEEEEEEECSSSCCHH-----HHHHC
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc-ceE-EEEEEE-CCEEEEEEEEECCCChhhh-----eecCC
Confidence 445668999999999999999999999998876666552 223 344444 4455889999999998776 67789
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCC-CCCeEEEEEeCCCCC--CCCCCChHHHHHHHHHcC-CeEEEeccCCCCC
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLH--EKREVPAQDGIEYAEKNG-MFFIETSAKTADN 183 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 183 (202)
|++++|||++++.+++.+..|+..+..... .+.|+++|+||+|+. ....+..+++..++...+ ++++++||++|.|
T Consensus 87 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~g 166 (184)
T 3ihw_A 87 DAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLN 166 (184)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBT
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCC
Confidence 999999999999999999999999887643 689999999999984 456678888999999986 8999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 028884 184 INQLFEEIAKRLPRPS 199 (202)
Q Consensus 184 i~~~~~~l~~~i~~~~ 199 (202)
++++|++|++.+.+.+
T Consensus 167 v~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 167 VERVFQDVAQKVVALR 182 (184)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999876554
No 45
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3e-32 Score=196.52 Aligned_cols=167 Identities=44% Similarity=0.779 Sum_probs=145.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+. +..+.+.+||+||++.+..++..+++.+|+
T Consensus 12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-GNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-TEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-CeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 3467999999999999999999999998877777777777766666654 344899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
+|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+. ...+..++...++...+++++++||+++.|++++|
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 169 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAF 169 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHH
Confidence 999999999999999999999887653 3579999999999984 34566778888999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
++|.+.+.+.
T Consensus 170 ~~l~~~~~~~ 179 (195)
T 1x3s_A 170 EELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHhh
Confidence 9999988654
No 46
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.4e-32 Score=195.85 Aligned_cols=167 Identities=29% Similarity=0.519 Sum_probs=143.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
....++|+|+|.+|+|||||+++|.++.+...+.++....+. ..+.. ++..+.+.+||+||++.+..++..+++.+|+
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 83 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSV-DGIPARLDILDTAGQEEFGAMREQYMRAGHG 83 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEE-TTEEEEEEEEECCCTTTTSCCHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEE-CCEEEEEEEEECCCchhhHHHHHHHHhhCCE
Confidence 356799999999999999999999998876666666655543 33443 3445889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHH-cCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~-~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
+++|||++++.++..+..|+..+.. ....+.|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~ 163 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHH
Confidence 9999999999999999999988744 456689999999999998777777888889999999999999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
++|.+.+.+.
T Consensus 164 ~~l~~~~~~~ 173 (181)
T 2fn4_A 164 EQLVRAVRKY 173 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999887644
No 47
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=4.3e-32 Score=198.43 Aligned_cols=168 Identities=40% Similarity=0.764 Sum_probs=143.4
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
....+.++|+|+|.+|+|||||+++|.+..+.....++.+.++....+.+. +..+.+.+||+||++.+...+..+++.+
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 93 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-GKKVKLQLWDTAGQERFRTITTAYYRGA 93 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-TEEEEEEEECCTTGGGGTCCCHHHHTTC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-CEEEEEEEEeCCCcHHHHHHHHHHhccC
Confidence 344567999999999999999999999988877777777777766666654 4448899999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~ 187 (202)
|++|+|||++++.++..+..|+..+......+.|+++|+||+|+ ....+..++...++...+++++++||+++.|++++
T Consensus 94 d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 94 MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 99999999999999999999999988876668999999999998 44556677888888888999999999999999999
Q ss_pred HHHHHHHcCC
Q 028884 188 FEEIAKRLPR 197 (202)
Q Consensus 188 ~~~l~~~i~~ 197 (202)
|++|.+.+.+
T Consensus 173 ~~~l~~~~~~ 182 (213)
T 3cph_A 173 FFTLAKLIQE 182 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987753
No 48
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=3.2e-32 Score=191.56 Aligned_cols=164 Identities=34% Similarity=0.573 Sum_probs=140.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.++|+|+|.+|+|||||+++|.++.+...+.++...... ..+.. ++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 79 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEV-DCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFA 79 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEES-SSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEE
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEE-CCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 3689999999999999999999998877666666554442 33333 444589999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-CCeEEEeccCCCCCHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-GMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++... +.+++++||++|.|++++|+
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (167)
T 1c1y_A 80 LVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFY 159 (167)
T ss_dssp EEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHH
Confidence 999999999999999998887664 4568999999999999877777788888888887 78999999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
+|.+.+.+
T Consensus 160 ~l~~~i~~ 167 (167)
T 1c1y_A 160 DLVRQINR 167 (167)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhC
Confidence 99988753
No 49
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.3e-32 Score=194.66 Aligned_cols=166 Identities=28% Similarity=0.564 Sum_probs=140.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.+ ++..+.+.+||+||++.+..++..+++.+|+
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 92 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTV-GGKQYLLGLYDTAGQEDYDRLRPLSYPMTDV 92 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEES-SSCEEEEEEECCCCSSSSTTTGGGGCTTCSE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCcchhHHHHHhcCCCCE
Confidence 34689999999999999999999999887666666655544 333443 4455899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEE
Q 028884 110 AVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIE 175 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~ 175 (202)
+|+|||++++.++..+. .|+..+... .++.|+++|+||+|+.+. +.+..++...++...++ ++++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 171 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEY-APNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVE 171 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEE
Confidence 99999999999999986 798888876 348999999999998753 35677888889988887 8999
Q ss_pred eccCCCCCHHHHHHHHHHHcCCC
Q 028884 176 TSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+||++|.|++++|++|++.+.++
T Consensus 172 ~Sa~~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 172 CSALTQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred eeCCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999987653
No 50
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=3e-32 Score=191.72 Aligned_cols=163 Identities=30% Similarity=0.415 Sum_probs=118.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.+||+|+|.+|+|||||+++|.+...... .++.+... ...+.. ++..+.+.+||++|++.+..++..+++.+|++++
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~-~~~~~~~~-~~~~~~-~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~ 78 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAGHTY-DRSIVV-DGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVI 78 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEE-TTEEEEEEEEECC---------------CCEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCC-CCccccce-EEEEEE-CCEEEEEEEEECCCCccchhhhhhhhhhCCEEEE
Confidence 58999999999999999999987665433 22333333 233333 4555899999999999999999999999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||++++.++..+..|+..+... ...++|+++|+||+|+.+...+..++...++...+++++++||++|.|++++|++|
T Consensus 79 v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 158 (166)
T 3q72_A 79 VYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGV 158 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHH
Confidence 99999999999999999888765 45689999999999998888888889999999999999999999999999999999
Q ss_pred HHHcCCC
Q 028884 192 AKRLPRP 198 (202)
Q Consensus 192 ~~~i~~~ 198 (202)
.+.+.++
T Consensus 159 ~~~~~~~ 165 (166)
T 3q72_A 159 VRQIRLR 165 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9987543
No 51
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1e-31 Score=195.14 Aligned_cols=164 Identities=34% Similarity=0.645 Sum_probs=139.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...++|+|+|.+|+|||||+++|.++.+...+.++.+..+.. .+.. ++..+.+.+||+||++.+..++..+++.+|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIA-DIEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEE-EEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEE-EEEE-CCEEEEEEEEECCCchhHHHHHHHhcCCCCEE
Confidence 467999999999999999999999988876666666555533 2333 44458999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
|+|||++++.++..+ ..|+..+... .++.|+++|+||+|+.+. +.+..++...++...+. +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (201)
T 2gco_A 101 LMCFSIDSPDSLENIPEKWTPEVKHF-CPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLEC 179 (201)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEe
Confidence 999999999999988 6888888765 357999999999998764 45677788888888888 89999
Q ss_pred ccCCCCCHHHHHHHHHHHcCC
Q 028884 177 SAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~ 197 (202)
||++|.|++++|++|.+.+.+
T Consensus 180 SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 180 SAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC
T ss_pred eCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999987643
No 52
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=193.25 Aligned_cols=165 Identities=30% Similarity=0.412 Sum_probs=129.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--hhhcccccccCccE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--YAALAPLYYRGAAV 109 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~~~~~~~~d~ 109 (202)
+.++|+|+|.+|+|||||+++|.+..+..... +.+.+.....+.+. +..+.+.+||+||.+. +..+...+++.+|+
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~ 80 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE-QLGEDVYERTLTVD-GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSA 80 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC-CSSSSEEEEEEEET-TEEEEEEEECCC-------CHHHHHTTTSCSE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC-ccccceeEEEEEEC-CEEEEEEEEecCCCCccchhhhHHhhcccCCE
Confidence 57999999999999999999999987654433 34444444555543 4447899999999887 56667788899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
+++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++++|
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 160 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHH
Confidence 99999999999999999999888765 34579999999999998777777888888888899999999999999999999
Q ss_pred HHHHHHcCCC
Q 028884 189 EEIAKRLPRP 198 (202)
Q Consensus 189 ~~l~~~i~~~ 198 (202)
++|.+.+.++
T Consensus 161 ~~l~~~~~~~ 170 (175)
T 2nzj_A 161 EGVVRQLRLR 170 (175)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987544
No 53
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=5.9e-32 Score=190.19 Aligned_cols=164 Identities=31% Similarity=0.546 Sum_probs=138.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.++|+|+|.+|+|||||+++|.++.+...+.++..... ...+.. ++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFL 80 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC---CHHHHHHHHHHCSEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEE-CCEEEEEEEEECCCcchhHHHHHHHhhcCCEEE
Confidence 469999999999999999999999887666665555444 233333 444588999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+...+..++...++...+++++++||+++.|++++|++
T Consensus 81 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 160 (168)
T 1u8z_A 81 CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFD 160 (168)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHH
Confidence 999999999999999999888765 3458999999999999776677788899999999999999999999999999999
Q ss_pred HHHHcCC
Q 028884 191 IAKRLPR 197 (202)
Q Consensus 191 l~~~i~~ 197 (202)
|.+.+.+
T Consensus 161 l~~~i~~ 167 (168)
T 1u8z_A 161 LMREIRA 167 (168)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998764
No 54
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=100.00 E-value=9.3e-33 Score=202.86 Aligned_cols=170 Identities=32% Similarity=0.520 Sum_probs=146.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
....++|+|+|.+|+|||||+++|.++.+.....++.+.......+...++..+.+.+||+||++.+..++..+++.+|+
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 87 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASG 87 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCE
Confidence 45689999999999999999999999887766667777766666666656666899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|+|||++++.++..+..|+..+......+.|+++|+||+|+.+...+...+...++...+++++++||++|.|++++|+
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~ 167 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFL 167 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHH
Confidence 99999999999999999999998877666799999999999987777888888888889999999999999999999999
Q ss_pred HHHHHcCCCC
Q 028884 190 EIAKRLPRPS 199 (202)
Q Consensus 190 ~l~~~i~~~~ 199 (202)
+|.+.+.+..
T Consensus 168 ~l~~~~~~~~ 177 (218)
T 4djt_A 168 HLARIFTGRP 177 (218)
T ss_dssp HHHHHHHCCT
T ss_pred HHHHHHhccc
Confidence 9999987654
No 55
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=100.00 E-value=3.7e-31 Score=191.95 Aligned_cols=164 Identities=44% Similarity=0.778 Sum_probs=141.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc-----------------------------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST----------------------------- 81 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 81 (202)
++.++|+|+|.+|+|||||+++|++..+...+.++.+..+....+.+.+..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 467999999999999999999999998877777777666666655554321
Q ss_pred -------EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 82 -------TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 82 -------~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
.+.+.+||+||++.+...+..+++.+|++|+|||++++.++..+..|+..+.... +.|+++|+||+| ...
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~--~~piilv~NK~D-~~~ 161 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS--NYIIILVANKID-KNK 161 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS--CCEEEEEEECTT-CC-
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC--CCcEEEEEECCC-ccc
Confidence 1789999999999999999999999999999999999999999999999887764 399999999999 555
Q ss_pred CCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 155 REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
..+..++...++...+++++++||+++.|+.++|++|.+.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 162 FQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 6677888999999999999999999999999999999988754
No 56
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=7.4e-32 Score=197.07 Aligned_cols=168 Identities=29% Similarity=0.378 Sum_probs=133.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhcccccccC
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YAALAPLYYRG 106 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~ 106 (202)
.....+||+|+|.+|+|||||+++|.+.... ....++.+.+.....+.+ ++..+.+.+||++|.+. +..+...+++.
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~-~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~ 111 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQV 111 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEE-TTEEEEEEEECCTTTTHHHHHHHHCCCCC
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEE-CCeeeEEEEeecCCCcchhhhHHHHHHhh
Confidence 3456799999999999999999999974431 122233444444455555 44558899999999876 55667778899
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHH
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNIN 185 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~ 185 (202)
+|++|+|||++++.+|..+..|+..+... ...++|+++|+||+|+.+.+.+..++...++...+++++++||++|.|++
T Consensus 112 a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~ 191 (211)
T 2g3y_A 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVK 191 (211)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 99999999999999999999998877654 23579999999999997766777778888888899999999999999999
Q ss_pred HHHHHHHHHcCC
Q 028884 186 QLFEEIAKRLPR 197 (202)
Q Consensus 186 ~~~~~l~~~i~~ 197 (202)
++|++|++.+..
T Consensus 192 elf~~l~~~i~~ 203 (211)
T 2g3y_A 192 ELFEGIVRQVRL 203 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 57
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=1.7e-31 Score=194.50 Aligned_cols=166 Identities=38% Similarity=0.707 Sum_probs=141.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.+..+...+.++.+.+.....+.+.+ ..+.+.+||+||++.+..++..+++.+|+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 83 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDD-RLVTMQIWDTAGQERFQSLGVAFYRGADC 83 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSS-CEEEEEEEEECSSGGGSCSCCGGGTTCSE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECC-EEEEEEEEeCCCcHHHHHhHHHHHhCCcE
Confidence 35689999999999999999999999988777777777777666666544 44899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCC----CCCeEEEEEeCCCCCCCCCCChHHHHHHHH-HcCCeEEEeccCCCCCH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGS----PDIVMALVGNKADLHEKREVPAQDGIEYAE-KNGMFFIETSAKTADNI 184 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~----~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~i 184 (202)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+. ...+..++...++. ..+++++++||++|.|+
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 162 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINV 162 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCH
Confidence 9999999999999999999988766532 478999999999987 44556677777777 66788999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028884 185 NQLFEEIAKRLPR 197 (202)
Q Consensus 185 ~~~~~~l~~~i~~ 197 (202)
+++|++|.+.+.+
T Consensus 163 ~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 163 EQAFQTIARNALK 175 (207)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988753
No 58
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=8.6e-32 Score=192.83 Aligned_cols=165 Identities=27% Similarity=0.553 Sum_probs=138.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
....++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.+ ++..+.+.+||+||++.+..++..+++.+|+
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ 81 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 81 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-SSCEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCChhhhhhHHhhcCCCcE
Confidence 45689999999999999999999999888766666665544 233443 3445899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcC-CeEEE
Q 028884 110 AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIE 175 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 175 (202)
+|+|||++++.++..+ ..|+..+... .++.|+++|+||+|+.+. ..+..+++..++...+ +++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 160 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 160 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEE
Confidence 9999999999999988 7898888776 358999999999998642 4567788888998877 78999
Q ss_pred eccC-CCCCHHHHHHHHHHHcCC
Q 028884 176 TSAK-TADNINQLFEEIAKRLPR 197 (202)
Q Consensus 176 ~s~~-~~~~i~~~~~~l~~~i~~ 197 (202)
+||+ ++.|++++|+.|.+.+.+
T Consensus 161 ~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 161 CSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp CBTTTBHHHHHHHHHHHHHHHHT
T ss_pred eeecCCCcCHHHHHHHHHHHHhc
Confidence 9999 689999999999988754
No 59
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=4.6e-32 Score=197.62 Aligned_cols=165 Identities=27% Similarity=0.553 Sum_probs=138.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
....++|+|+|.+|+|||||+++|.+..+...+.++....+ ...+.+ ++..+.+.+||++|++.+..++..+++.+|+
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 102 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEI-DTQRIELSLWDTSGSPYYDNVRPLSYPDSDA 102 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEES-SSSEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEE-CCEEEEEEEEeCCCcHhhhHHHHhhccCCCE
Confidence 35679999999999999999999999888766666665554 333433 4455899999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcC-CeEEE
Q 028884 110 AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNG-MFFIE 175 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 175 (202)
+|+|||++++.++..+ ..|+..+... .++.|+++|+||+|+.+. ..+..+++..+++..+ +++++
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 181 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEF-CPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIE 181 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHH-CTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHH-CCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999988 7898888776 357999999999998642 4567778888988877 68999
Q ss_pred eccC-CCCCHHHHHHHHHHHcCC
Q 028884 176 TSAK-TADNINQLFEEIAKRLPR 197 (202)
Q Consensus 176 ~s~~-~~~~i~~~~~~l~~~i~~ 197 (202)
+||+ ++.|++++|+.|++.+.+
T Consensus 182 ~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 182 CSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp CCTTTCHHHHHHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHHHHhh
Confidence 9999 689999999999987653
No 60
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=1.5e-31 Score=194.47 Aligned_cols=166 Identities=31% Similarity=0.535 Sum_probs=142.6
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.+ ++..+.+.+||+||++.+..++..+++.+|+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEE-CCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 35679999999999999999999999887666666655444 333444 3445889999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
+++|||++++.++..+..|+..+.... ..+.|+++|+||+|+.....+..+++..++...+++++++||++|.|++++|
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~ 168 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVF 168 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHH
Confidence 999999999999999999999887763 3589999999999998777778888999999999999999999999999999
Q ss_pred HHHHHHcCC
Q 028884 189 EEIAKRLPR 197 (202)
Q Consensus 189 ~~l~~~i~~ 197 (202)
++|++.+.+
T Consensus 169 ~~l~~~i~~ 177 (206)
T 2bov_A 169 FDLMREIRA 177 (206)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 61
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=8.1e-32 Score=196.15 Aligned_cols=165 Identities=30% Similarity=0.580 Sum_probs=134.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
....+.++|+|+|.+|+|||||+++|.++.+...+.++.... ....+.+ ++..+.+.+||+||.+.+...+..+++.+
T Consensus 25 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~ 102 (204)
T 4gzl_A 25 YFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-YSANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQT 102 (204)
T ss_dssp -----CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEE-EEEEEEC-C-CEEEEEEEEECCSGGGTTTGGGGCTTC
T ss_pred hhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecce-eEEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccC
Confidence 334568999999999999999999999988766666555433 2333443 44558899999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------CCChHHHHHHHHHcCC-eE
Q 028884 108 AVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNGM-FF 173 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~ 173 (202)
|++|+|||++++.++..+. .|+..+.... .++|+++|+||+|+.... .+..++...++...++ ++
T Consensus 103 d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 103 DVFLICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 9999999999999999986 8888888774 689999999999986543 2667788888888886 59
Q ss_pred EEeccCCCCCHHHHHHHHHHHc
Q 028884 174 IETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i 195 (202)
+++||++|.|++++|++|.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
No 62
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.8e-31 Score=189.98 Aligned_cols=167 Identities=31% Similarity=0.619 Sum_probs=141.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++..... ...+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 80 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVS 80 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEE-TTEEEEEEEECCCCSGGGTTTGGGGCTTCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEE-CCEEEEEEEEECCCCHhHHHHHHHhccCCcEE
Confidence 3579999999999999999999999887666665554443 333333 45558899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
|+|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+. ..+..++...++...+. +++++
T Consensus 81 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 159 (186)
T 1mh1_A 81 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 159 (186)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHS-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCChhhHHHHHHHHHHHHHHhC-CCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEe
Confidence 9999999999999886 7888887763 48999999999998653 45677788888888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
||++|.|++++|++|.+.+.++..
T Consensus 160 Sa~~g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 160 SALTQRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CTTTCTTHHHHHHHHHHHHSCCCC
T ss_pred cCCCccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999987764
No 63
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=1.7e-31 Score=191.13 Aligned_cols=166 Identities=31% Similarity=0.533 Sum_probs=141.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.+..+...+.++..... ...+.. ++..+.+.+||+||++.+..++..+++.+|++
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVL-DGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEE-CCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 4579999999999999999999999887666665555444 333333 44457899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
++|||++++.++..+..|+..+... ...++|+++|+||+|+.+...+..++...++...+++++++|++++.|++++|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 173 (187)
T 2a9k_A 94 LCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFF 173 (187)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHH
Confidence 9999999999999999999888765 345899999999999977667778888999999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028884 190 EIAKRLPRP 198 (202)
Q Consensus 190 ~l~~~i~~~ 198 (202)
+|.+.+.++
T Consensus 174 ~l~~~i~~~ 182 (187)
T 2a9k_A 174 DLMREIRAR 182 (187)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999987653
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=9.8e-32 Score=189.85 Aligned_cols=166 Identities=31% Similarity=0.460 Sum_probs=139.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.++|+|+|.+|+|||||+++|.++.+...+.++....+. .... .++..+.+.+||+||++.+...+..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 79 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVIS-CDKSICTLQITDTTGSHQFPAMQRLSISKGHAFI 79 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEE-ETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEE-ECCEEEEEEEEECCCchhhHHHHHHhcccCCEEE
Confidence 4689999999999999999999998876655555554432 2222 3455578999999999999888888999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
+|||++++.+++.+..|+..+.... .++.|+++|+||+|+.....+...+...++...+++++++||+++.|++++|+
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 159 (172)
T 2erx_A 80 LVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQ 159 (172)
T ss_dssp EEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHH
T ss_pred EEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHH
Confidence 9999999999998888888776642 25789999999999977777777888888888999999999999999999999
Q ss_pred HHHHHcCCCC
Q 028884 190 EIAKRLPRPS 199 (202)
Q Consensus 190 ~l~~~i~~~~ 199 (202)
+|.+.+.+++
T Consensus 160 ~l~~~~~~~~ 169 (172)
T 2erx_A 160 ELLNLEKRRT 169 (172)
T ss_dssp HHHHTCCSSC
T ss_pred HHHHHHhhhh
Confidence 9999987765
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=6.7e-32 Score=189.71 Aligned_cols=163 Identities=34% Similarity=0.559 Sum_probs=139.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+.++|+|+|++|+|||||+++|.++.+...+.++..... ...+.. ++..+.+.+||+||++.+..++..+++.+|+++
T Consensus 2 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i 79 (167)
T 1kao_A 2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEV-DSSPSVLEILDTAGTEQFASMRDLYIKNGQGFI 79 (167)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEE-CCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 368999999999999999999999887766666555433 344444 344578999999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+...+...+...++...+++++++||++|.|++++|++
T Consensus 80 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~ 159 (167)
T 1kao_A 80 LVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAE 159 (167)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHH
Confidence 999999999999999998887665 3468999999999998776777788888899999999999999999999999999
Q ss_pred HHHHcC
Q 028884 191 IAKRLP 196 (202)
Q Consensus 191 l~~~i~ 196 (202)
|.+.+.
T Consensus 160 l~~~~~ 165 (167)
T 1kao_A 160 IVRQMN 165 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998764
No 66
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=4.7e-32 Score=197.39 Aligned_cols=167 Identities=28% Similarity=0.484 Sum_probs=108.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCCCCCccccceeEEEEEEEecCCc-EEEEEEEeCCChhhhhhcccccccCc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQDST-TVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
...++|+|+|.+|+|||||+++|.+. .+...+.++.+.+.....+.+.+.. .+.+.+||+||++.+...+..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999998 6655555665555555555554431 58999999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCC---CCCeEEEEEeCCCCCC-CCCCChHHHHHHHHHcCCeEEEeccCC-CC
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGS---PDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKT-AD 182 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~ 182 (202)
|++|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+ ...+..+++..++...+++++++||++ +.
T Consensus 98 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 98 YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 999999999999999999999999988755 6899999999999987 667778889999999999999999999 99
Q ss_pred CHHHHHHHHHHHcCC
Q 028884 183 NINQLFEEIAKRLPR 197 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~ 197 (202)
|++++|++|.+.+.+
T Consensus 178 gi~~l~~~i~~~~~~ 192 (208)
T 2yc2_C 178 DADAPFLSIATTFYR 192 (208)
T ss_dssp --CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999987653
No 67
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-31 Score=193.32 Aligned_cols=166 Identities=34% Similarity=0.492 Sum_probs=140.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.++.+...+.++.+..+ ...+.+ ++..+.+.+||+||.+. ...+..+++.+|+
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~ 101 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATI-DDEVVSMEILDTAGQED-TIQREGHMRWGEG 101 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-CHHHHHHHHHCSE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-ccchhhhhccCCE
Confidence 35679999999999999999999999988777666666544 333333 44458899999999887 6777888899999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC-CHHHH
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD-NINQL 187 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~i~~~ 187 (202)
+|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.+.+..++...++...+++++++||+++. |++++
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l 181 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEI 181 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHH
Confidence 99999999999999999999888765 34689999999999997767778888899999999999999999999 99999
Q ss_pred HHHHHHHcCCC
Q 028884 188 FEEIAKRLPRP 198 (202)
Q Consensus 188 ~~~l~~~i~~~ 198 (202)
|++|++.+.++
T Consensus 182 ~~~l~~~i~~~ 192 (196)
T 2atv_A 182 FYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987643
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.98 E-value=5e-31 Score=192.31 Aligned_cols=167 Identities=32% Similarity=0.606 Sum_probs=136.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...++|+|+|.+|+|||||+++|.++.+...+.++.+...... +.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 100 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEV-DGKQVELALWDTAGQEDYDRLRPLSYPDTDVI 100 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEE-TTEEEEEEEEECTTCTTCTTTGGGGCTTCCEE
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEE-CCEEEEEEEEECCCcHHHHHHHHhhcCCCCEE
Confidence 4579999999999999999999999887766666655544332 333 44558999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
|+|||++++.++..+ ..|+..+... .++.|+++|+||+|+.+. +.+..++...++...++ +++++
T Consensus 101 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (207)
T 2fv8_A 101 LMCFSVDSPDSLENIPEKWVPEVKHF-CPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLEC 179 (207)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-STTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEe
Confidence 999999999999988 7788888765 357999999999998654 34667788888888887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
||++|.|++++|++|.+.+.+++.
T Consensus 180 SA~~g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 180 SAKTKEGVREVFETATRAALQKRY 203 (207)
T ss_dssp CTTTCTTHHHHHHHHHHHHHSCCC
T ss_pred eCCCCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999999876643
No 69
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.98 E-value=7e-31 Score=188.34 Aligned_cols=163 Identities=32% Similarity=0.554 Sum_probs=136.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
++.++|+|+|.+|+|||||+++|.++.+...+.++..... ...+.. ++..+.+.+||+||++.+..++..+++.+|++
T Consensus 2 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (189)
T 4dsu_A 2 STEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 79 (189)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCC---CTTHHHHHHHCSEE
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEE-CCcEEEEEEEECCCcHHHHHHHHHHHhcCCEE
Confidence 3579999999999999999999999887666665554333 333333 45558899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .....+....++...+++++++||++|.|++++|+
T Consensus 80 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~ 158 (189)
T 4dsu_A 80 LCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFY 158 (189)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888774 456899999999999874 45667888889999999999999999999999999
Q ss_pred HHHHHcC
Q 028884 190 EIAKRLP 196 (202)
Q Consensus 190 ~l~~~i~ 196 (202)
+|.+.+.
T Consensus 159 ~l~~~~~ 165 (189)
T 4dsu_A 159 TLVREIR 165 (189)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998874
No 70
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.98 E-value=1.1e-30 Score=187.87 Aligned_cols=165 Identities=32% Similarity=0.538 Sum_probs=129.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++..... ...+.. ++..+.+.+||+||.+.+...+..+++.+|++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 96 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGF 96 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCC-----------CTTCSEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEE-CCEEEEEEEEECCChHHHHHHHHHhhCcCCEE
Confidence 4679999999999999999999999887666555544433 333333 34458899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~ 189 (202)
++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .....++..+++...+++++++|++++.|++++|+
T Consensus 97 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~ 175 (190)
T 3con_A 97 LCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFY 175 (190)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHH
Confidence 9999999999999999999888765 335799999999999876 45667888889999999999999999999999999
Q ss_pred HHHHHcCCC
Q 028884 190 EIAKRLPRP 198 (202)
Q Consensus 190 ~l~~~i~~~ 198 (202)
+|.+.+.+.
T Consensus 176 ~l~~~~~~~ 184 (190)
T 3con_A 176 TLVREIRQY 184 (190)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 71
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.98 E-value=1.6e-31 Score=193.87 Aligned_cols=168 Identities=30% Similarity=0.525 Sum_probs=132.2
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGA 107 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~ 107 (202)
....+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.. ++..+.+.+||+||++.+..++..+++.+
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSV-DGRPVRLQLCDTAGQDEFDKLRPLCYTNT 92 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEE-TTEEEEEEEEECCCSTTCSSSGGGGGTTC
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEE-CCEEEEEEEEECCCCHHHHHHhHhhcCCC
Confidence 3445689999999999999999999999887666565554433 333333 44558899999999999999999999999
Q ss_pred cEEEEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCC------------CCCCChHHHHHHHHHcCC-eE
Q 028884 108 AVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHE------------KREVPAQDGIEYAEKNGM-FF 173 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~------------~~~~~~~~~~~~~~~~~~-~~ 173 (202)
|++|+|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+ ...+..++...++...+. ++
T Consensus 93 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 93 DIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHHHHC-SSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 9999999999999999986 7998887763 4899999999999865 245677788888888887 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 174 IETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+++||+++.|++++|++|++.+.++
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999887644
No 72
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.98 E-value=1.5e-31 Score=195.58 Aligned_cols=166 Identities=34% Similarity=0.648 Sum_probs=137.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.+ ++..+.+.+||+||++.+..++..+++.+|++
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 84 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAV-DGQIVNLGLWDTAGQEDYSRLRPLSYRGADIF 84 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEEC-SSCEEEEEEECCCCCCCCCC--CGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEE-CCEEEEEEEEECCCcHHHHHHHHhhccCCCEE
Confidence 4679999999999999999999999887766666665544 333343 44558999999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--------CChHHHHHHHHHcCC-eEEEeccCC
Q 028884 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE--------VPAQDGIEYAEKNGM-FFIETSAKT 180 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--------~~~~~~~~~~~~~~~-~~~~~s~~~ 180 (202)
|+|||++++.++..+. .|+..+.... ++.|++||+||+|+..... +..++...++...+. +++++||++
T Consensus 85 ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (212)
T 2j0v_A 85 VLAFSLISKASYENVLKKWMPELRRFA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKT 163 (212)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCC
Confidence 9999999999999886 8998887763 5899999999999865432 367778888888886 899999999
Q ss_pred CCCHHHHHHHHHHHcCCCC
Q 028884 181 ADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 181 ~~~i~~~~~~l~~~i~~~~ 199 (202)
|.|++++|++|++.+.+..
T Consensus 164 g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 164 QQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp CTTHHHHHHHHHHHHHCC-
T ss_pred CCCHHHHHHHHHHHHhhhh
Confidence 9999999999999886653
No 73
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.98 E-value=4.2e-31 Score=188.04 Aligned_cols=159 Identities=22% Similarity=0.360 Sum_probs=129.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.+||+|+|.+|+|||||+++|.++.+.. +.++.+..+ ...+.+ ++..+.+.+||++|++. ..+++.+|++
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ 76 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLV-DGQTHLVLIREEAGAPD-----AKFSGWADAV 76 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEE-TTEEEEEEEEECSSSCC-----HHHHHHCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEE-CCEEEEEEEEECCCCch-----hHHHHhCCEE
Confidence 457999999999999999999999988865 555555433 444444 44558899999999875 3467789999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc---CCCCCeEEEEEeCCCCC--CCCCCChHHHHHHHHHc-CCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH---GSPDIVMALVGNKADLH--EKREVPAQDGIEYAEKN-GMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~---~~~~~p~ivv~nK~D~~--~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~~i 184 (202)
|+|||++++.++..+..|+..+... ..++.|+++|+||+|+. ..+.+..+++..++... +++++++||++|.|+
T Consensus 77 ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 156 (178)
T 2iwr_A 77 IFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNV 156 (178)
T ss_dssp EEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCH
Confidence 9999999999999999877665543 33689999999999984 44567778888888876 688999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028884 185 NQLFEEIAKRLPR 197 (202)
Q Consensus 185 ~~~~~~l~~~i~~ 197 (202)
+++|++|++.+.+
T Consensus 157 ~~lf~~l~~~~~~ 169 (178)
T 2iwr_A 157 DRVFQEVAQKVVT 169 (178)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987754
No 74
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.98 E-value=2.8e-31 Score=194.62 Aligned_cols=167 Identities=33% Similarity=0.598 Sum_probs=120.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++....+ ...+.+ ++..+.+.+||+||++.+..++..+++.+|++
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 109 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQV-KGKPVHLHIWDTAGQDDYDRLRPLFYPDASVL 109 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEE-TTEEEEEEEEEC---------------CEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHHhccCCEE
Confidence 4579999999999999999999999887666665554433 333333 44458899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------CCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
|+|||++++.++..+. .|+..+... .+++|+++|+||+|+.... .+..++...+++..++ +++++
T Consensus 110 i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 188 (214)
T 2j1l_A 110 LLCFDVTSPNSFDNIFNRWYPEVNHF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLEC 188 (214)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHH-CSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHh-CCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999986 798888776 3679999999999987642 5667788889988887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
||++|.|++++|++|++.+.+.+.
T Consensus 189 SA~~g~gi~el~~~l~~~~~~~~~ 212 (214)
T 2j1l_A 189 SARLHDNVHAVFQEAAEVALSSRG 212 (214)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHC--
T ss_pred cCCCCCCHHHHHHHHHHHHHHhhc
Confidence 999999999999999998876543
No 75
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.98 E-value=6e-32 Score=192.90 Aligned_cols=165 Identities=32% Similarity=0.627 Sum_probs=126.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++....+. ..+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 83 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVV-NGATVNLGLWDTAGQEDYNRLRPLSYRGADVF 83 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC--------CEEECCCC-CTTTTTGGGGGTTCSEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEE-CCEEEEEEEEECCCChhhhhhHHhhccCCCEE
Confidence 45799999999999999999999998876555555443321 11222 33447788999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCCC----------CChHHHHHHHHHcCC-eEEEecc
Q 028884 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSA 178 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~s~ 178 (202)
++|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+... +..++...++...++ +++++||
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa 162 (182)
T 3bwd_D 84 ILAFSLISKASYENVSKKWIPELKHYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSS 162 (182)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCT
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 9999999999999986 7988887763 4899999999999865433 467778888888886 8999999
Q ss_pred CCCCCHHHHHHHHHHHcCCC
Q 028884 179 KTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 179 ~~~~~i~~~~~~l~~~i~~~ 198 (202)
++|.|++++|++|.+.+.++
T Consensus 163 ~~~~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 163 KSQENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TTCTTHHHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999988764
No 76
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=1.4e-30 Score=188.39 Aligned_cols=166 Identities=32% Similarity=0.468 Sum_probs=138.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...++|+|+|.+|+|||||+++|.++.+...+.++....+. ..+.. ++..+.+.+||+||++.+..++..+++.+|++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 83 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISC-DKSVCTLQITDTTGSHQFPAMQRLSISKGHAF 83 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEE-TTEEEEEEEEECCGGGSCHHHHHHHHHHCSEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEE-CCEEEEEEEEeCCChHHhHHHHHHhhccCCEE
Confidence 45799999999999999999999998876666665554332 22333 45558899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
|+|||++++.++..+..|+..+.... ..+.|+++|+||+|+.+ ..+..++...++...+++++++||++|.|++++|
T Consensus 84 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~ 162 (199)
T 2gf0_A 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162 (199)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHH
Confidence 99999999999998888887776542 24789999999999875 4566778888888899999999999999999999
Q ss_pred HHHHHHcCCCC
Q 028884 189 EEIAKRLPRPS 199 (202)
Q Consensus 189 ~~l~~~i~~~~ 199 (202)
++|.+.+.++.
T Consensus 163 ~~l~~~~~~~~ 173 (199)
T 2gf0_A 163 QELLTLETRRN 173 (199)
T ss_dssp HHHHHHCSSSC
T ss_pred HHHHHHHhhhh
Confidence 99999987664
No 77
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.97 E-value=1.8e-30 Score=182.07 Aligned_cols=162 Identities=31% Similarity=0.562 Sum_probs=136.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEE
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVV 112 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 112 (202)
.++|+++|.+|+|||||+++|.++.+.....++..... ...+.. ++..+.+.+||+||++.+...+..+++.+|++++
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 80 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVI-DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 80 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEE-TTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEE-CCEEEEEEEEECCCchhhhHHHHHhhccCCEEEE
Confidence 58999999999999999999999887666555554433 333333 3445889999999999888888889999999999
Q ss_pred EEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHH
Q 028884 113 VYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 113 v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ .....++...++...+++++++|++++.|++++|++|
T Consensus 81 v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l 159 (166)
T 2ce2_X 81 VFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTL 159 (166)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHH
Confidence 99999999999999999888765 335799999999999876 4566778888999999999999999999999999999
Q ss_pred HHHcCC
Q 028884 192 AKRLPR 197 (202)
Q Consensus 192 ~~~i~~ 197 (202)
.+.+.+
T Consensus 160 ~~~~~~ 165 (166)
T 2ce2_X 160 VREIRQ 165 (166)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 988754
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=1.1e-31 Score=197.69 Aligned_cols=169 Identities=29% Similarity=0.556 Sum_probs=142.1
Q ss_pred CCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028884 27 SDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (202)
Q Consensus 27 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 106 (202)
.......+||+|+|.+|+|||||+++|+.+.+...+.++.+.+......... +..+.+.+||+||++.+..++..+++.
T Consensus 9 ~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 9 QGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-RGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp TTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-TEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred CCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 3445678999999999999999999987776666666677666666665554 344899999999999999999999999
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
+|++|+|||++++.++..+..|+..+.... .++|+++|+||+|+.+... ..+...++...+++++++||+++.|+.+
T Consensus 88 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 164 (221)
T 3gj0_A 88 AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIPIVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEK 164 (221)
T ss_dssp CCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TTCCEEEEEECTTSSSCSS--CGGGCCHHHHHTCEEEECBGGGTBTTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCEEEEEECCccccccc--cHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 999999999999999999999999988773 5799999999999875443 2355667788899999999999999999
Q ss_pred HHHHHHHHcCCCC
Q 028884 187 LFEEIAKRLPRPS 199 (202)
Q Consensus 187 ~~~~l~~~i~~~~ 199 (202)
+|++|.+.+....
T Consensus 165 l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 165 PFLWLARKLIGDP 177 (221)
T ss_dssp HHHHHHHHHHTCT
T ss_pred HHHHHHHHHHhCc
Confidence 9999999886653
No 79
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=4.3e-31 Score=191.13 Aligned_cols=167 Identities=17% Similarity=0.291 Sum_probs=126.5
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccc
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYY 104 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 104 (202)
...+..+..+|+|+|.+|+|||||+++|.++.+.. .+.++.+... ..+. .. .+.+.+||+||++.+..++..++
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~--~~~~--~~-~~~~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV--ETFE--KG-RVAFTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE--EEEE--ET-TEEEEEEEECCSGGGGGGGGGGC
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE--EEEE--eC-CEEEEEEECCCCHhHHHHHHHHH
Confidence 34555678999999999999999999999988776 5566655333 2332 22 27899999999999999999999
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCC--------CCCeEEEEEeCCCCCCCCCCChHHHHH------HHHHcC
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGS--------PDIVMALVGNKADLHEKREVPAQDGIE------YAEKNG 170 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~--------~~~p~ivv~nK~D~~~~~~~~~~~~~~------~~~~~~ 170 (202)
+.+|++|+|||++++.++..+..|+..+..... .++|++||+||+|+..... ..+... ++...+
T Consensus 85 ~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~ 162 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHP 162 (199)
T ss_dssp TTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSC
T ss_pred hcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCe
Confidence 999999999999999999999888887755311 3789999999999876532 112111 113467
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 171 MFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 171 ~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
++++++||+++.|++++|++|++.+.++.
T Consensus 163 ~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 163 FVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred eEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999876544
No 80
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.97 E-value=4.7e-31 Score=189.64 Aligned_cols=167 Identities=23% Similarity=0.331 Sum_probs=128.1
Q ss_pred CCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc
Q 028884 26 SSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR 105 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 105 (202)
......+.++|+|+|.+|+|||||+++|.++.+...+.++.+..+.. +.. .. +.+.+||+||++.+...+..+++
T Consensus 15 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~--~~-~~~~l~Dt~G~~~~~~~~~~~~~ 89 (188)
T 1zd9_A 15 VPRGSKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--ITK--GN-VTIKLWDIGGQPRFRSMWERYCR 89 (188)
T ss_dssp ----CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--EEE--TT-EEEEEEEECCSHHHHTTHHHHHT
T ss_pred cccCCCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--EEe--CC-EEEEEEECCCCHhHHHHHHHHHc
Confidence 33444568999999999999999999999988776666666555432 322 22 78999999999999999999999
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccC
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAK 179 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~ 179 (202)
.+|++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.... ...+...... ..+++++++||+
T Consensus 90 ~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~ 167 (188)
T 1zd9_A 90 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCK 167 (188)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTT
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECC
Confidence 999999999999999999998888877653 23689999999999986542 2222222211 234579999999
Q ss_pred CCCCHHHHHHHHHHHcCCCC
Q 028884 180 TADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~~~ 199 (202)
+|.|++++|++|.+.+.+++
T Consensus 168 ~g~gv~~l~~~l~~~~~~~~ 187 (188)
T 1zd9_A 168 EKDNIDITLQWLIQHSKSRR 187 (188)
T ss_dssp TCTTHHHHHHHHHHTCC---
T ss_pred CCCCHHHHHHHHHHHHHhhc
Confidence 99999999999999987754
No 81
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.97 E-value=8.9e-30 Score=183.68 Aligned_cols=164 Identities=30% Similarity=0.396 Sum_probs=129.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCC--CCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-hhhcccccccCc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF--DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-YAALAPLYYRGA 107 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-~~~~~~~~~~~~ 107 (202)
...++|+++|.+|+|||||+++|.+... ...+ ++.+.+.....+.+ ++..+.+.+||++|.+. +..+...+++.+
T Consensus 4 ~~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~ 81 (192)
T 2cjw_A 4 MTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDX-EVLGEDTYERTLMV-DGESATIILLDMWENKGENEWLHDHCMQVG 81 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHSCCC-----GGGCTTEEEEEEEE-TTEEEEEEEECCCCC----CTTGGGHHHHC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCcCCcCccc-cccceeEEEEEEEE-CCeEEEEEEEEeccCcchhhhHHHhhcccC
Confidence 4579999999999999999999996432 2222 23444444455554 44557889999999776 456677788889
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHH
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQ 186 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~ 186 (202)
|++++|||++++.+|..+..|+..+... ...+.|+++|+||+|+...+.+...+...++...+++++++||++|.|+++
T Consensus 82 ~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 82 DAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp SEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 9999999999999999999998877764 345799999999999876666777777888888899999999999999999
Q ss_pred HHHHHHHHcC
Q 028884 187 LFEEIAKRLP 196 (202)
Q Consensus 187 ~~~~l~~~i~ 196 (202)
+|++|++.+.
T Consensus 162 lf~~l~~~~~ 171 (192)
T 2cjw_A 162 LFEGIVRQVR 171 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998774
No 82
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=2.1e-30 Score=182.96 Aligned_cols=161 Identities=18% Similarity=0.330 Sum_probs=126.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+.. ..++.+. ....+.+. ...+.+||+||++.+...+..+++.+|++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGF--NVETVTYK---NLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSE--EEEEEEET---TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCcc--ceEEEEEC---CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 457999999999999999999999887643 3444433 33344443 27899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHH-----HHHcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEY-----AEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i 184 (202)
|+|+|++++.++.....|+..+... ...+.|+++|+||+|+.+... ..+.... +...+++++++||+++.|+
T Consensus 79 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (171)
T 1upt_A 79 IYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKGTGL 156 (171)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTCTTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCCcCH
Confidence 9999999999999988888776554 236899999999999866432 2222221 2234567999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 028884 185 NQLFEEIAKRLPRPS 199 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~ 199 (202)
+++|++|.+.+.+++
T Consensus 157 ~~l~~~l~~~i~~~q 171 (171)
T 1upt_A 157 DEAMEWLVETLKSRQ 171 (171)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhhcC
Confidence 999999999987653
No 83
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=7.3e-31 Score=189.48 Aligned_cols=166 Identities=19% Similarity=0.245 Sum_probs=130.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-----------ccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-----------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
.....+||+|+|.+|+|||||++.+.+. +...+ .++.+.++....+...++..+.+.+||+||++.+.
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~ 88 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN 88 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH
Confidence 3457899999999999999999766653 33322 12332333222221234456899999999999999
Q ss_pred hcccccccCccEEEEEEeCC------ChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC
Q 028884 98 ALAPLYYRGAAVAVVVYDIT------SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM 171 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 171 (202)
.++..+++.+|++|+|||++ +..++..+..|+..+. ....+.|+++|+||+|+.+. +..+++..++...++
T Consensus 89 ~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~-~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~ 165 (198)
T 3t1o_A 89 ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYG-LTLDDVPIVIQVNKRDLPDA--LPVEMVRAVVDPEGK 165 (198)
T ss_dssp HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTT-CCTTSSCEEEEEECTTSTTC--CCHHHHHHHHCTTCC
T ss_pred HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhc-cccCCCCEEEEEEchhcccc--cCHHHHHHHHHhcCC
Confidence 99999999999999999999 5567777778877773 23578999999999998654 677888889988999
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 172 -FFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 172 -~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+++++||++|.|++++|++|++.+.++
T Consensus 166 ~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 166 FPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp SCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654
No 84
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=7.5e-31 Score=184.21 Aligned_cols=158 Identities=19% Similarity=0.356 Sum_probs=120.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEE
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVV 113 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v 113 (202)
+||+|+|.+|+|||||+++|.++.+.. ..++.+. ....+... .+.+.+||+||++.+...+..+++.+|++++|
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~--~~~~~~~~---~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 74 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF--NVETVEYK---NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 74 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC--CEEEEECS---SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce--eEEEEEEC---CEEEEEEEcCCChhhHHHHHHHhccCCEEEEE
Confidence 589999999999999999999877653 3444442 22333332 26899999999999999999999999999999
Q ss_pred EeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-----HHcCCeEEEeccCCCCCHHHH
Q 028884 114 YDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNINQL 187 (202)
Q Consensus 114 ~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i~~~ 187 (202)
||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.|++++
T Consensus 75 ~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 152 (164)
T 1r8s_A 75 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEG 152 (164)
T ss_dssp EETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHH
Confidence 9999999999998888877653 34689999999999986542 222222211 113457999999999999999
Q ss_pred HHHHHHHcCCCC
Q 028884 188 FEEIAKRLPRPS 199 (202)
Q Consensus 188 ~~~l~~~i~~~~ 199 (202)
|++|.+.+.+++
T Consensus 153 ~~~l~~~i~~~k 164 (164)
T 1r8s_A 153 LDWLSNQLRNQK 164 (164)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHhhcC
Confidence 999999987653
No 85
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=182.17 Aligned_cols=162 Identities=19% Similarity=0.276 Sum_probs=126.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC-CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ-FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
.+.++|+|+|.+|+|||||+++|.+.. +.....++.+ .....+.+.+ +.+.+||+||++.+...+..+++.+|+
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 93 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIG--FSIEKFKSSS---LSFTVFDMSGQGRYRNLWEHYYKEGQA 93 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSS--EEEEEEECSS---CEEEEEEECCSTTTGGGGGGGGGGCSE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccc--eeEEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCE
Confidence 457999999999999999999999877 3444444444 3344444432 689999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCC---CCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGS---PDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTA 181 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~ 181 (202)
+|+|||++++.++..+..|+..+..... .+.|+++|+||+|+.+. ...++...... ..+++++++||+++
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 171 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKG 171 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCC
Confidence 9999999999999999889888776533 58999999999998653 33444444442 23568999999999
Q ss_pred CCHHHHHHHHHHHcCCCC
Q 028884 182 DNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~~ 199 (202)
.|++++|++|.+.+.+-+
T Consensus 172 ~gi~~l~~~l~~~i~~~k 189 (190)
T 2h57_A 172 EGLQEGVDWLQDQIQTVK 189 (190)
T ss_dssp BTHHHHHHHHHHHC----
T ss_pred cCHHHHHHHHHHHHHHhc
Confidence 999999999999987643
No 86
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=4e-29 Score=179.03 Aligned_cols=160 Identities=19% Similarity=0.245 Sum_probs=127.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++. ...+.++.+.. ...+.+. . ..+.+||+||++.+...+..+++.+|++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~--~~~~~~~--~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 89 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN--IKTLEHR--G-FKLNIWDVGGQKSLRSYWRNYFESTDGL 89 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE--EEEEEET--T-EEEEEEEECCSHHHHTTGGGGCTTCSEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc--eEEEEEC--C-EEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 567999999999999999999999877 44445554433 3344443 2 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i 184 (202)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+...... ..+++++++||+++.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (186)
T 1ksh_A 90 IWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDL 167 (186)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCCCCH
Confidence 9999999999999998888877654 346799999999999866432 233322221 24567999999999999
Q ss_pred HHHHHHHHHHcCCC
Q 028884 185 NQLFEEIAKRLPRP 198 (202)
Q Consensus 185 ~~~~~~l~~~i~~~ 198 (202)
+++|++|.+.+.++
T Consensus 168 ~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 168 LPGIDWLLDDISSR 181 (186)
T ss_dssp HHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988664
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=3.7e-29 Score=180.14 Aligned_cols=157 Identities=19% Similarity=0.264 Sum_probs=124.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+++|++|+|||||+++|.++.+.. +.++.... ...+.+.+ +.+.+||+||++.++..+..+++.+|++
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~-~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 94 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPT--SEELAIGN---IKFTTFDLGGHIQARRLWKDYFPEVNGI 94 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCCSCE--EEEEEETT---EEEEEEECCCSGGGTTSGGGGCTTCCEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCc-cccCCCCC--eEEEEECC---EEEEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 456899999999999999999999987643 33444443 34444443 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH------------cCCeEEEec
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK------------NGMFFIETS 177 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~------------~~~~~~~~s 177 (202)
++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+ ....++..+.... .+++++++|
T Consensus 95 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 172 (190)
T 1m2o_B 95 VFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCS 172 (190)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECB
T ss_pred EEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeE
Confidence 9999999999999999998887654 346799999999999865 3445555554432 346799999
Q ss_pred cCCCCCHHHHHHHHHHHc
Q 028884 178 AKTADNINQLFEEIAKRL 195 (202)
Q Consensus 178 ~~~~~~i~~~~~~l~~~i 195 (202)
|++|.|++++|++|.+.+
T Consensus 173 a~~g~gi~~l~~~l~~~l 190 (190)
T 1m2o_B 173 VVMRNGYLEAFQWLSQYI 190 (190)
T ss_dssp TTTTBSHHHHHHHHHTTC
T ss_pred CCcCCCHHHHHHHHHhhC
Confidence 999999999999998754
No 88
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.97 E-value=2.3e-30 Score=186.70 Aligned_cols=162 Identities=17% Similarity=0.347 Sum_probs=120.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
...+.++|+|+|.+|+|||||+++|.++.+.. ..++.+ .....+... . +.+.+||+||.+.+...+..+++.+|
T Consensus 25 ~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~--~~~~~~~~~--~-~~~~i~Dt~G~~~~~~~~~~~~~~~d 98 (192)
T 2b6h_A 25 FGKKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIG--FNVETVEYK--N-ICFTVWDVGGQDKIRPLWRHYFQNTQ 98 (192)
T ss_dssp TTTSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETT--EEEEEEEET--T-EEEEEEECC-----CTTHHHHHHTCC
T ss_pred ccCCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCc--eeEEEEEEC--C-EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 34568999999999999999999999877542 333333 333333332 2 78999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-----HHcCCeEEEeccCCCC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTAD 182 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~ 182 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+.. ...+..... ...+++++++||++|.
T Consensus 99 ~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~ 176 (192)
T 2b6h_A 99 GLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGT 176 (192)
T ss_dssp EEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcC
Confidence 999999999999999998888877653 34579999999999986542 222222211 1234579999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q 028884 183 NINQLFEEIAKRLPRP 198 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~~ 198 (202)
|++++|++|++.+.++
T Consensus 177 gi~~l~~~l~~~i~~q 192 (192)
T 2b6h_A 177 GLYDGLDWLSHELSKR 192 (192)
T ss_dssp THHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999998764
No 89
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=2.7e-29 Score=181.99 Aligned_cols=157 Identities=16% Similarity=0.204 Sum_probs=120.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+++|++|+|||||+++|.++.+. .+.++.... ...+.+.+ +.+.+|||||++.++..+..+++.+|++
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 96 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT--SEELTIAG---MTFTTFDLGGHIQARRVWKNYLPAINGI 96 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS--CEEEEETT---EEEEEEEECC----CCGGGGGGGGCSEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce--eEEEEECC---EEEEEEECCCcHhhHHHHHHHHhcCCEE
Confidence 45689999999999999999999987764 233444333 23344433 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-----------------cCCe
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----------------NGMF 172 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----------------~~~~ 172 (202)
++|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+ .+..++...++.. .+++
T Consensus 97 i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (198)
T 1f6b_A 97 VFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLE 174 (198)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEE
T ss_pred EEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEE
Confidence 9999999999999999998887654 346899999999999865 4455666665542 3457
Q ss_pred EEEeccCCCCCHHHHHHHHHHHc
Q 028884 173 FIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 173 ~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
++++||++|.|++++|++|.+.+
T Consensus 175 ~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 175 VFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp EEECBTTTTBSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 99999999999999999998765
No 90
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=1.4e-28 Score=178.19 Aligned_cols=165 Identities=44% Similarity=0.777 Sum_probs=140.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
+..++|+|+|++|+|||||+++|.+..+...+.++.+.......+.+. +..+.+.+||++|++.++..+..+++.+|++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-TEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-CEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 457999999999999999999999988777777776666666666554 4447899999999999988888889999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
++|+|.++..++..+..|+..+......+.|+++|+||+|+.+...+...++..++...++.++++|++++.|+.++|++
T Consensus 82 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~ 161 (199)
T 2f9l_A 82 LLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKN 161 (199)
T ss_dssp EEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHH
Confidence 99999999999988888988877665567899999999999776667778888999999999999999999999999999
Q ss_pred HHHHcC
Q 028884 191 IAKRLP 196 (202)
Q Consensus 191 l~~~i~ 196 (202)
|.+.+.
T Consensus 162 l~~~~~ 167 (199)
T 2f9l_A 162 ILTEIY 167 (199)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988764
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=2.2e-29 Score=180.70 Aligned_cols=162 Identities=20% Similarity=0.324 Sum_probs=123.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+. ...++.+.. ...+.+.+ +.+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 87 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSN--VEEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTEFV 87 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSS--CEEEEETT---EEEEEEECCC----CGGGHHHHTTCCEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccc--eEEEEECC---EEEEEEECCCCHhHHHHHHHHhcCCCEE
Confidence 45799999999999999999999987765 334444322 23333332 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~i 184 (202)
|+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+. ...++...... ..+++++++||++|.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (187)
T 1zj6_A 88 IVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGL 165 (187)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCH
Confidence 9999999999999999998887654 2357999999999998653 23333333332 23568999999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 028884 185 NQLFEEIAKRLPRPSP 200 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~~ 200 (202)
+++|++|++.+.+...
T Consensus 166 ~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 166 CQGLEWMMSRLKIRLE 181 (187)
T ss_dssp HHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999987654
No 92
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=2.6e-29 Score=179.43 Aligned_cols=159 Identities=20% Similarity=0.344 Sum_probs=121.8
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
...+.++|+|+|.+|+|||||+++|.++.+ ....++.+... ..+.+.+ +.+.+||+||.+.+...+..+++.+|
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~--~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV--EEIVINN---TRFLMWDIGGQESLRSSWNTYYTNTE 90 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC--EEEEETT---EEEEEEEESSSGGGTCGGGGGGTTCC
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee--EEEEECC---EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 334579999999999999999999999876 33334444332 3333332 78999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-----HHcCCeEEEeccCCCC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTAD 182 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~ 182 (202)
++|+|||++++.++..+..|+..+... ...+.|+++|+||+|+.+. ....+..... ...+++++++||++|.
T Consensus 91 ~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~ 168 (181)
T 2h17_A 91 FVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGE 168 (181)
T ss_dssp EEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCc
Confidence 999999999999999998888877654 2468999999999998653 2233333332 1234579999999999
Q ss_pred CHHHHHHHHHHHc
Q 028884 183 NINQLFEEIAKRL 195 (202)
Q Consensus 183 ~i~~~~~~l~~~i 195 (202)
|++++|++|.+.+
T Consensus 169 gi~~l~~~l~~~l 181 (181)
T 2h17_A 169 GLCQGLEWMMSRL 181 (181)
T ss_dssp THHHHHHHHHTC-
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998653
No 93
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=1.9e-28 Score=176.50 Aligned_cols=166 Identities=45% Similarity=0.779 Sum_probs=144.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
..+..++|+|+|++|||||||+++|.+..+...+.++.+.+.....+.+. +..+.+.+||++|.+++...+..+++.++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~ 103 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGLERYRAITSAYYRGAV 103 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-TEEEEEEEEEECSCCSSSCCCHHHHTTCC
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-CEEEEEEEEECCCCcchhhhhHHHhhcCC
Confidence 34567999999999999999999999988877777887777766666664 44478889999999988888888889999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHH
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~ 188 (202)
++++|+|..+..+++.+..|+..+......+.|+++++||+|+.+.......++..++...++.++++|++++.|+.++|
T Consensus 104 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~ 183 (191)
T 1oix_A 104 GALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183 (191)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHH
Confidence 99999999999989888889887776555678999999999987766677788899999999999999999999999999
Q ss_pred HHHHHHc
Q 028884 189 EEIAKRL 195 (202)
Q Consensus 189 ~~l~~~i 195 (202)
+.|.+.+
T Consensus 184 ~~l~~~i 190 (191)
T 1oix_A 184 QTILTEI 190 (191)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998875
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=4e-29 Score=178.59 Aligned_cols=161 Identities=19% Similarity=0.270 Sum_probs=122.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...++|+++|++|+|||||+++|.+..+. ...++.+. ....+.+. . +.+.+||+||++.+...+..+++.+|++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~--~~~~~~~~--~-~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 87 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGF--NIKSVQSQ--G-FKLNVWDIGGQRKIRPYWRSYFENTDIL 87 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTE--EEEEEEET--T-EEEEEEECSSCGGGHHHHHHHHTTCSEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCe--EEEEEEEC--C-EEEEEEECCCCHHHHHHHHHHhCCCCEE
Confidence 45799999999999999999999987542 23334442 23334443 2 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-----HHcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYA-----EKNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~~i 184 (202)
++|||++++.++..+..|+..+... ...+.|+++|+||+|+.+... .++..... ...+++++++||++|.|+
T Consensus 88 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi 165 (181)
T 1fzq_A 88 IYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGV 165 (181)
T ss_dssp EEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCH
Confidence 9999999999999998888776543 346799999999999875432 22222221 123457999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 028884 185 NQLFEEIAKRLPRPS 199 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~ 199 (202)
+++|++|.+.+.+++
T Consensus 166 ~~l~~~l~~~~~~~~ 180 (181)
T 1fzq_A 166 QDGMNWVCKNVNAKK 180 (181)
T ss_dssp HHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999987654
No 95
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=1.2e-29 Score=183.50 Aligned_cols=164 Identities=21% Similarity=0.310 Sum_probs=121.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEE--EEecCCcEEEEEEEeCCChhhhhhcc---cc
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT--IALQDSTTVKFEIWDTAGQERYAALA---PL 102 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~D~~G~~~~~~~~---~~ 102 (202)
.+.++.+||+|+|.+|+|||||++++.+... .. ++.+....... ..+.++..+.+.+||++|++.|.... ..
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 91 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMS-PN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEM 91 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCC-GG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHH
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCC-Cc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccc
Confidence 4445689999999999999999998877432 22 23333322222 22333444789999999999887665 78
Q ss_pred cccCccEEEEEEeCCCh--hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-------CCCChHHHHHHHH----Hc
Q 028884 103 YYRGAAVAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-------REVPAQDGIEYAE----KN 169 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~----~~ 169 (202)
+++.+|++|+|||++++ +++..+..|+..+... .++.|+++|+||+|+.+. +.+...+...++. ..
T Consensus 92 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 92 IFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-NPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp HHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHH-CTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTS
T ss_pred ccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999999997 6677777777776544 568999999999998652 2344445666676 67
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 170 GMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 170 ~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+++++++||++ .|+.++|+.|++.+.
T Consensus 171 ~~~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 171 HLSFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CEEEEEECTTS-THHHHHHHHHHHHTC
T ss_pred CcceEEEEech-hhHHHHHHHHHHHhC
Confidence 88999999999 999999999998763
No 96
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=5.9e-30 Score=183.89 Aligned_cols=162 Identities=22% Similarity=0.342 Sum_probs=125.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
++.++|+|+|.+|+|||||+++|..+.+.. ..++.+. ....+... . +.+.+||+||++.+...+..+++.+|++
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~--~~~~~~~~--~-~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 93 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV--NLETLQYK--N-ISFEVWDLGGQTGVRPYWRCYFSDTDAV 93 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC--CEEEEEET--T-EEEEEEEECCSSSSCCCCSSSSTTCCEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce--EEEEEEEC--C-EEEEEEECCCCHhHHHHHHHHhhcCCEE
Confidence 467999999999999999999998876542 3334332 23334333 2 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHH-----HHHcCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEY-----AEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~-----~~~~~~~~~~~s~~~~~~i 184 (202)
|+|+|++++.++..+..|+..+... ...+.|+++|+||+|+.+... ..+.... +...+++++++||+++.|+
T Consensus 94 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 171 (189)
T 2x77_A 94 IYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTGDGL 171 (189)
T ss_dssp EEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTH
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCccCH
Confidence 9999999999999988888777554 346899999999999865432 2222221 1223457999999999999
Q ss_pred HHHHHHHHHHcCCCCC
Q 028884 185 NQLFEEIAKRLPRPSP 200 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~~ 200 (202)
+++|++|.+.+.+++.
T Consensus 172 ~~l~~~l~~~i~~~~~ 187 (189)
T 2x77_A 172 VEGMDWLVERLREQGL 187 (189)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999998876543
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.3e-31 Score=194.88 Aligned_cols=162 Identities=31% Similarity=0.617 Sum_probs=131.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+.++..... ...+.. ++..+.+.+||+||++.+...+..+++.+|++
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVF 105 (204)
Confidence 5689999999999999999999998877655555443333 223333 33447888999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCCC------------CCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEKR------------EVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
|+|||++++.++..+. .|+..+.... ++.|+++|+||+|+.+.. .+..++...++...++ +++++
T Consensus 106 ilv~D~~~~~s~~~~~~~~~~~l~~~~-~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~v 184 (204)
T 3th5_A 106 LICFSLVSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 184 (204)
Confidence 9999999999998886 7888776653 379999999999986542 4455666777777787 89999
Q ss_pred ccCCCCCHHHHHHHHHHHc
Q 028884 177 SAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i 195 (202)
||++|.|++++|++|++.+
T Consensus 185 SA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 185 SALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999998765
No 98
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.96 E-value=3.2e-28 Score=189.09 Aligned_cols=165 Identities=30% Similarity=0.593 Sum_probs=138.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
...++|+++|.+|+|||||+++|.++.+...+.++..... ...+.. ++..+.+.+||+||.+.+...+..+++.+|++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 230 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMV-DGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVF 230 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEE-TTEEEEEEEEEECCCGGGTTTGGGGCTTCSEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEE-CCEEEEEEEEeCCCchhhhHHHHHhccCCCEE
Confidence 3469999999999999999999999887666665554433 333343 44558889999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC------------CCCChHHHHHHHHHcCC-eEEEe
Q 028884 111 VVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK------------REVPAQDGIEYAEKNGM-FFIET 176 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~------------~~~~~~~~~~~~~~~~~-~~~~~ 176 (202)
++|||++++.++..+. .|+..+.... .++|+++|+||+|+... ..+...+...++...++ +++++
T Consensus 231 i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 309 (332)
T 2wkq_A 231 LICFSLVSPASFHHVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLEC 309 (332)
T ss_dssp EEEEETTCHHHHHHHHHTHHHHHHHHC-TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEEC
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhhC-CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEe
Confidence 9999999999999886 7888887763 48999999999998653 45777888899999987 89999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
||++|.|++++|++|.+.+..+
T Consensus 310 Sa~~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 310 SALTQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp CTTTCTTHHHHHHHHHHHHHC-
T ss_pred cCCCCcCHHHHHHHHHHHHhcC
Confidence 9999999999999999988664
No 99
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=2e-29 Score=180.56 Aligned_cols=166 Identities=19% Similarity=0.377 Sum_probs=121.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC--CCCCCCccccceeEEEEEEEec--CCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG--QFDPTSKVTVGASFLSQTIALQ--DSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
.++|+|+|++|+|||||+++|.+. .+...+.++.+.+.....+... ++..+.+.+||++|.+.+..++..+++.+|
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 579999999999999999999985 3334445555555544443321 223478999999999999999999999999
Q ss_pred EEEEEEeCCCh-hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC---hHHHHHHHHHcCCe----EEEeccCC
Q 028884 109 VAVVVYDITSP-DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP---AQDGIEYAEKNGMF----FIETSAKT 180 (202)
Q Consensus 109 ~~i~v~d~~~~-~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~---~~~~~~~~~~~~~~----~~~~s~~~ 180 (202)
++++|||++++ .++..+..|+..+... .++.|+++|+||+|+.+..... ......++...+++ ++++||++
T Consensus 82 ~~i~v~d~~~~~~s~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 160 (184)
T 2zej_A 82 LYLAVYDLSKGQAEVDAMKPWLFNIKAR-ASSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATE 160 (184)
T ss_dssp EEEEEEEGGGCHHHHHTHHHHHHHHHHH-CTTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTS
T ss_pred EEEEEEeCCcchhHHHHHHHHHHHHHhh-CCCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEeccc
Confidence 99999999997 5788899999988765 3578999999999986533221 22234455556676 89999999
Q ss_pred CC-CHHHHHHHHHHHcCCCC
Q 028884 181 AD-NINQLFEEIAKRLPRPS 199 (202)
Q Consensus 181 ~~-~i~~~~~~l~~~i~~~~ 199 (202)
+. ++.++++.|.+.+...+
T Consensus 161 ~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 161 ESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp CCHHHHHHHHHHHHHHHCC-
T ss_pred CchhHHHHHHHHHHHHhccc
Confidence 97 99999999998876654
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=1.3e-28 Score=175.84 Aligned_cols=159 Identities=22% Similarity=0.362 Sum_probs=121.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
.+.++|+|+|++|+|||||+++|.++.+ ....++.+.. ...+.+.+ ..+.+||+||.+.+...+..+++.+|++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~--~~~~~~~~---~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 89 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFN--VETLSYKN---LKLNVWDLGGQTSIRPYWRCYYADTAAV 89 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCC--EEEEEETT---EEEEEEEEC----CCTTGGGTTTTEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccc--eEEEEECC---EEEEEEECCCCHhHHHHHHHHhccCCEE
Confidence 5679999999999999999999998766 3333444432 23334332 7899999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcC-CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-----cCCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHG-SPDIVMALVGNKADLHEKREVPAQDGIEYAEK-----NGMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~~~~~~i 184 (202)
++|+|++++.++..+..|+..+.... ..+.|+++|+||+|+.+. ....+....... .+++++++||+++.|+
T Consensus 90 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi 167 (183)
T 1moz_A 90 IFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGI 167 (183)
T ss_dssp EEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTH
T ss_pred EEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCH
Confidence 99999999999999988888876542 468999999999998653 223333333221 2347999999999999
Q ss_pred HHHHHHHHHHcCC
Q 028884 185 NQLFEEIAKRLPR 197 (202)
Q Consensus 185 ~~~~~~l~~~i~~ 197 (202)
+++|++|.+.+.+
T Consensus 168 ~~l~~~l~~~~~~ 180 (183)
T 1moz_A 168 TEGLDWLIDVIKE 180 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988754
No 101
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=3.4e-27 Score=172.64 Aligned_cols=162 Identities=19% Similarity=0.204 Sum_probs=113.5
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh-cccccccCccE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-LAPLYYRGAAV 109 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-~~~~~~~~~d~ 109 (202)
.+.++|+|+|.+|+|||||+++|.++.+...+. +....... +.+.+...+.+.+|||||++.+.. ++..+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCC-CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccC-CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 457999999999999999999999988765554 33333322 444444347899999999999987 78888999999
Q ss_pred EEEEEeCCChh-HHHHHHH-HHHHHHH--cCCCCCeEEEEEeCCCCCCCCCCCh--HHHHHHHH----------------
Q 028884 110 AVVVYDITSPD-SFNKAQY-WVKELQK--HGSPDIVMALVGNKADLHEKREVPA--QDGIEYAE---------------- 167 (202)
Q Consensus 110 ~i~v~d~~~~~-s~~~~~~-~~~~i~~--~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~~~~---------------- 167 (202)
+|+|||+++.. ++..... |...+.. ....+.|+++|+||+|+........ ........
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~ 161 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSS 161 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCC
Confidence 99999999853 4555544 4444433 2355799999999999876432111 01111111
Q ss_pred -----------------Hc--CCeEEEeccCCC------CCHHHHHHHHHHHc
Q 028884 168 -----------------KN--GMFFIETSAKTA------DNINQLFEEIAKRL 195 (202)
Q Consensus 168 -----------------~~--~~~~~~~s~~~~------~~i~~~~~~l~~~i 195 (202)
.+ ++++++|||++| .|++++|++|.+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 162 STAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp ---CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHHC
T ss_pred ccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHhC
Confidence 11 567999999999 99999999998764
No 102
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.95 E-value=1.2e-27 Score=168.41 Aligned_cols=154 Identities=20% Similarity=0.199 Sum_probs=113.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc-
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR- 105 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~- 105 (202)
.++|+++|++|+|||||+++|.+..+.....++.+.......+.+.+ ..+.+|||||...+. .+...+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT---EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC---cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 58999999999999999999998765444444434333344444432 589999999987654 23344554
Q ss_pred -CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 106 -GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 106 -~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
.+|++++|+|.++.+ ....|+..+.. .+.|+++|+||+|+.....+.. +...++..++++++++||++|.|+
T Consensus 80 ~~~~~~i~v~D~~~~~---~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v 152 (165)
T 2wji_A 80 EKPDLVVNIVDATALE---RNLYLTLQLME---MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGI 152 (165)
T ss_dssp HCCSEEEEEEETTCHH---HHHHHHHHHHH---TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSH
T ss_pred CCCCEEEEEecCCchh---HhHHHHHHHHh---cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCH
Confidence 799999999999854 34457666654 3689999999999864333332 356677788899999999999999
Q ss_pred HHHHHHHHHHcC
Q 028884 185 NQLFEEIAKRLP 196 (202)
Q Consensus 185 ~~~~~~l~~~i~ 196 (202)
+++|++|.+.+.
T Consensus 153 ~~l~~~l~~~~~ 164 (165)
T 2wji_A 153 EELKKAISIAVK 164 (165)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999998874
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=8e-28 Score=186.75 Aligned_cols=162 Identities=19% Similarity=0.352 Sum_probs=118.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCcc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAA 108 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d 108 (202)
...+.++|+|+|.+|+|||||+++|.++.+... .++..... ..+... . +.+.+|||||++.+..++..+++.+|
T Consensus 161 ~~~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~--~~~~~~--~-~~l~i~Dt~G~~~~~~~~~~~~~~ad 234 (329)
T 3o47_A 161 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNV--ETVEYK--N-ISFTVWDVGGQDKIRPLWRHYFQNTQ 234 (329)
T ss_dssp --CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEE--EEEEET--T-EEEEEEECC-----CCSHHHHHTTEE
T ss_pred cccCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEE--EEEecC--c-EEEEEEECCCCHhHHHHHHHHhccCC
Confidence 345678999999999999999999998775332 23333332 223322 2 78999999999999999999999999
Q ss_pred EEEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCC
Q 028884 109 VAVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTAD 182 (202)
Q Consensus 109 ~~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~ 182 (202)
++|+|||++++.++..+..|+..+... ...++|++||+||+|+.+... ..+...... ..+++++++||++|.
T Consensus 235 ~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g~ 312 (329)
T 3o47_A 235 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSGD 312 (329)
T ss_dssp EEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTTB
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCCc
Confidence 999999999999999887777666443 346899999999999876432 222222221 124579999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q 028884 183 NINQLFEEIAKRLPRP 198 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~~ 198 (202)
|++++|++|++.+.++
T Consensus 313 gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 313 GLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp THHHHHHHHHHHHTC-
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998765
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=1.5e-27 Score=169.41 Aligned_cols=160 Identities=14% Similarity=0.177 Sum_probs=118.0
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
..+.++|+|+|.+|+|||||+++|.+..+.....++.+.+.....+.+.+ ..+.+||+||++.+..++..++..+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 81 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVND---KKITFLDTPGHEAFTTMRARGAQVTDI 81 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETT---EEEEESCCCSSSSSSCSCCSSCCCCCE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCC---ceEEEEECCCCHHHHHHHHHHHhhCCE
Confidence 34679999999999999999999999887766555555555444455443 468899999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-------C--CeEEEeccCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-------G--MFFIETSAKT 180 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-------~--~~~~~~s~~~ 180 (202)
+|+|+|++++...... .++..+. ..+.|+++|+||+|+.... ..+........ + ++++++||++
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~---~~~~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 154 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAK---AANVPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSAKT 154 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHG---GGSCCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCSSS
T ss_pred EEEEEECCCCCcHHHH-HHHHHHH---hCCCCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEecCC
Confidence 9999999884222211 1222222 3478999999999986531 22222222221 1 5799999999
Q ss_pred CCCHHHHHHHHHHHcCCCC
Q 028884 181 ADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 181 ~~~i~~~~~~l~~~i~~~~ 199 (202)
|.|++++|++|++.+...+
T Consensus 155 ~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 155 KEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp SHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhhhhhc
Confidence 9999999999998776544
No 105
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.95 E-value=1.3e-27 Score=195.29 Aligned_cols=163 Identities=21% Similarity=0.377 Sum_probs=124.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAV 109 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~ 109 (202)
....++|+|+|.+|+|||||+++|.++.+.. ..++.+... ..+.+.+ +.+.+|||+|.+.+..++..+++.+|+
T Consensus 319 ~~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~--~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~ad~ 392 (497)
T 3lvq_E 319 SNKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNV--ETVTYKN---VKFNVWDVGGQDKIRPLWRHYYTGTQG 392 (497)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE--EEEESSS---CEEEEEEECCCGGGSGGGGGGGTTCCE
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeE--EEEEeCC---EEEEEEECCCcHHHHHHHHHHhccCCE
Confidence 3567999999999999999999999988543 334444333 3333322 689999999999999999999999999
Q ss_pred EEEEEeCCChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHH-----HcCCeEEEeccCCCCC
Q 028884 110 AVVVYDITSPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAE-----KNGMFFIETSAKTADN 183 (202)
Q Consensus 110 ~i~v~d~~~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~-----~~~~~~~~~s~~~~~~ 183 (202)
+|+|||++++.++..+..|+..+... ...++|++||+||+|+.+... ..+...... ..+++++++||++|.|
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g~g 470 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSGDG 470 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCEEEEECBTTTTBT
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCeEEEEEECCCCCC
Confidence 99999999999999998888877553 336899999999999865322 222222111 1234699999999999
Q ss_pred HHHHHHHHHHHcCCCCC
Q 028884 184 INQLFEEIAKRLPRPSP 200 (202)
Q Consensus 184 i~~~~~~l~~~i~~~~~ 200 (202)
++++|++|.+.+.+...
T Consensus 471 i~~l~~~l~~~~~~~~~ 487 (497)
T 3lvq_E 471 LYEGLTWLTSNYKSKLA 487 (497)
T ss_dssp HHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHhcCC
Confidence 99999999999887653
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=8.9e-29 Score=185.89 Aligned_cols=169 Identities=22% Similarity=0.335 Sum_probs=121.8
Q ss_pred CCCCCCceeeEEEEcCC---------CCcHHHHHHHHHh---CCCCCCCcccc-ceeEEEEEEE-------------ecC
Q 028884 26 SSDAKNLRVKLVLLGDS---------GVGKSCIVLRFVR---GQFDPTSKVTV-GASFLSQTIA-------------LQD 79 (202)
Q Consensus 26 ~~~~~~~~~~i~v~G~~---------~~GKSsli~~l~~---~~~~~~~~~~~-~~~~~~~~~~-------------~~~ 79 (202)
......+.+||+|+|.+ |+|||||+++|.+ ..+...+.++. +.++....+. ..+
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 33445668999999999 9999999999998 44444444332 2222111111 113
Q ss_pred CcEEEEEEEe-----------------------CCChhhhhhccccccc---------------------CccEEEEEEe
Q 028884 80 STTVKFEIWD-----------------------TAGQERYAALAPLYYR---------------------GAAVAVVVYD 115 (202)
Q Consensus 80 ~~~~~~~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d 115 (202)
+..+.+.+|| +.|+++|..++..+++ ++|++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 4457899999 5666666777777776 7999999999
Q ss_pred CCCh--hHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH-cCCeEEEeccCCCCCHHHHHHHH
Q 028884 116 ITSP--DSFNKAQYWVKELQKH-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEK-NGMFFIETSAKTADNINQLFEEI 191 (202)
Q Consensus 116 ~~~~--~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~~i~~~~~~l 191 (202)
++++ .+++.+..|+..+... ...++|++||+||+|+.....+ ++...++.. .+++++++||+++.|++++|++|
T Consensus 172 ~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l 249 (255)
T 3c5h_A 172 VSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFSTL 249 (255)
T ss_dssp CBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHH
T ss_pred CCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHH
Confidence 9998 8999999999888654 3457999999999998654333 456667765 47889999999999999999999
Q ss_pred HHHcC
Q 028884 192 AKRLP 196 (202)
Q Consensus 192 ~~~i~ 196 (202)
++.+.
T Consensus 250 ~~~l~ 254 (255)
T 3c5h_A 250 VQLID 254 (255)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98764
No 107
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.95 E-value=9.1e-27 Score=172.17 Aligned_cols=162 Identities=16% Similarity=0.125 Sum_probs=113.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh------hh----hhhcc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ------ER----YAALA 100 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~------~~----~~~~~ 100 (202)
...++|+|+|.+|+|||||+++|.+..+.....+..+...........+ ..+.+|||||. +. +.. +
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~-~ 102 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL---NKYQIIDTPGLLDRAFENRNTIEMTT-I 102 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEETT---EEEEEEECTTTTTSCGGGCCHHHHHH-H
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC---CeEEEEECCCCcCcccchhhhHHHHH-H
Confidence 4579999999999999999999998765422222222222222222222 68999999998 32 222 2
Q ss_pred cccccCccEEEEEEeCCChhHHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChH---HHHHHHHHcC--CeE
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ---DGIEYAEKNG--MFF 173 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~~~~~~~~~~--~~~ 173 (202)
..+...+|++|+|||++++.++. ....|+..+... ..+.|+++|+||+|+.+...+... ....++...+ +++
T Consensus 103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (228)
T 2qu8_A 103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSV-FSNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKF 181 (228)
T ss_dssp HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTC-C-CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEE
T ss_pred HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHh-hcCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceE
Confidence 33467789999999999987654 234565555543 347899999999999776555543 3455666666 889
Q ss_pred EEeccCCCCCHHHHHHHHHHHcCC
Q 028884 174 IETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
+++||++|.|++++|++|++.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 182 SSFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988754
No 108
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=8.2e-27 Score=179.57 Aligned_cols=161 Identities=22% Similarity=0.343 Sum_probs=125.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC---CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-----hhccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-----AALAPLY 103 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-----~~~~~~~ 103 (202)
..+||+++|.+|+|||||+++|+++.... ...++..... ..+.+. +. +.+.+||+||++.+ ...+..+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~--~~~~~~-~~-~~l~i~Dt~G~~~~~~~~~~~~~~~~ 77 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEH--SHLRFL-GN-MTLNLWDCGGQDVFMENYFTKQKDHI 77 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEE--EEEEET-TT-EEEEEEEECCSHHHHHHHHTTTHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEE--EEEEeC-Cc-eEEEEEECCCcHHHhhhhhhhHHHHH
Confidence 46899999999999999999999874322 2233333333 333332 33 79999999999988 6788888
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHc--CCCCCeEEEEEeCCCCCC--CCC----CChHHHHHHHHHcC---Ce
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKH--GSPDIVMALVGNKADLHE--KRE----VPAQDGIEYAEKNG---MF 172 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~--~~~~~p~ivv~nK~D~~~--~~~----~~~~~~~~~~~~~~---~~ 172 (202)
++.+|++|+|||++++.++..+..|+..+... ..+++|+++|+||+|+.+ .+. +..+++..++..++ ++
T Consensus 78 ~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~ 157 (307)
T 3r7w_A 78 FQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLI 157 (307)
T ss_dssp HTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCE
T ss_pred hccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeE
Confidence 99999999999999999999887775554332 156899999999999876 332 44567778888886 78
Q ss_pred EEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 173 FIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 173 ~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
++++||++ .++.++|..++..+..
T Consensus 158 ~~~tSa~~-~~i~e~~~~iv~~li~ 181 (307)
T 3r7w_A 158 GFPTSIWD-ESLYKAWSQIVCSLIP 181 (307)
T ss_dssp EEECCTTS-SHHHHHHHHHHHTTCS
T ss_pred EEEeeecC-ChHHHHHHHHHHHHcC
Confidence 99999999 8999999999887754
No 109
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.94 E-value=1.3e-26 Score=167.09 Aligned_cols=160 Identities=18% Similarity=0.183 Sum_probs=108.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhhc
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAAL 99 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~ 99 (202)
....++|+|+|.+|+|||||+++|.+..+.....++.+.......... +. .+.+||+|| .+.+..+
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~-~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~ 95 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII-ND---ELHFVDVPGYGFAKVSKSEREAWGRM 95 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE-TT---TEEEEECCCBCCCSSCHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE-CC---cEEEEECCCCCccccCHHHHHHHHHH
Confidence 346799999999999999999999988654444433333332222333 22 589999999 7777777
Q ss_pred ccccccCc---cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCCh--HHHHH-HHHHcCCeE
Q 028884 100 APLYYRGA---AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--QDGIE-YAEKNGMFF 173 (202)
Q Consensus 100 ~~~~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~~~~~-~~~~~~~~~ 173 (202)
+..+++.+ |++++|+|++++.++.... ++..+.. .+.|+++|+||+|+........ ++... +....+.++
T Consensus 96 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (195)
T 1svi_A 96 IETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDEL 171 (195)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEE
T ss_pred HHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCce
Confidence 77777766 9999999999876665432 2233332 4789999999999876443321 12222 222246789
Q ss_pred EEeccCCCCCHHHHHHHHHHHcCC
Q 028884 174 IETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
+++||+++.|++++|++|.+.+.+
T Consensus 172 ~~~Sa~~~~gv~~l~~~l~~~l~~ 195 (195)
T 1svi_A 172 ILFSSETKKGKDEAWGAIKKMINR 195 (195)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHTC
T ss_pred EEEEccCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999988753
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.94 E-value=1.4e-25 Score=172.76 Aligned_cols=167 Identities=17% Similarity=0.108 Sum_probs=125.7
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----------hh
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----------YA 97 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----------~~ 97 (202)
.+..+.-.|+++|.+|+|||||+|+|++..+........++......+...+.. ..+.+|||||... +.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-~~i~lvDTPG~~~~~~~~~l~~~~~ 83 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-AQIIFLDTPGIYEPKKSDVLGHSMV 83 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-EEEEEEECCCCCCCCTTCHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-CeEEEEECcCCCccccchhHHHHHH
Confidence 344567899999999999999999999988754433332222222222222212 6899999999743 33
Q ss_pred hcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC--CeEEE
Q 028884 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIE 175 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~ 175 (202)
..+..+++.+|++++|+|++++.++.....|+..+... +.|+++|+||+|+.............+....+ .++++
T Consensus 84 ~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~ 160 (308)
T 3iev_A 84 EIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVP 160 (308)
T ss_dssp HHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEE
T ss_pred HHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEE
Confidence 56677788999999999999987777777777777653 68999999999987444555566666777765 77999
Q ss_pred eccCCCCCHHHHHHHHHHHcCCC
Q 028884 176 TSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+||++|.|++++|++|.+.+.+.
T Consensus 161 vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 161 ISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CBTTTTBSHHHHHHHHHHHSCBC
T ss_pred EeCCCCCCHHHHHHHHHHhCccC
Confidence 99999999999999999998764
No 111
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.94 E-value=1.6e-26 Score=165.62 Aligned_cols=158 Identities=20% Similarity=0.191 Sum_probs=119.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR 105 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 105 (202)
+.++|+++|++|+|||||+++|.+..+.....++.+.......+...+ ..+.+|||||...+. .++..++.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG---EKFKVVDLPGVYSLTANSIDEIIARDYII 82 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSCCSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC---cEEEEEECCCcCccccccHHHHHHHHHHh
Confidence 568999999999999999999998654333344444444444454433 689999999987653 33444554
Q ss_pred --CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 106 --GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 106 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
.+|++++|+|.++ ++....|+..+.. .+.|+++|+||+|+.....+. .+...++...+++++++|++++.|
T Consensus 83 ~~~~~~~i~v~d~~~---~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~ 155 (188)
T 2wjg_A 83 NEKPDLVVNIVDATA---LERNLYLTLQLME---MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMG 155 (188)
T ss_dssp HHCCSEEEEEEEGGG---HHHHHHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBS
T ss_pred ccCCCEEEEEecchh---HHHHHHHHHHHHh---cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCC
Confidence 4899999999876 4556667776654 478999999999986543333 346677778889999999999999
Q ss_pred HHHHHHHHHHHcCCCC
Q 028884 184 INQLFEEIAKRLPRPS 199 (202)
Q Consensus 184 i~~~~~~l~~~i~~~~ 199 (202)
++++|++|++.+....
T Consensus 156 v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 156 IEELKKAISIAVKDKK 171 (188)
T ss_dssp HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcc
Confidence 9999999999887654
No 112
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.94 E-value=2.5e-26 Score=160.45 Aligned_cols=150 Identities=21% Similarity=0.168 Sum_probs=104.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh-------hhhccccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER-------YAALAPLYYR 105 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-------~~~~~~~~~~ 105 (202)
.+|+++|.+|+|||||+++|.+..... ...+..+.+.....+...+ ..+.+||+||... +...+..+++
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 78 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR---GRFLLVDTGGLWSGDKWEKKIQEKVDRALE 78 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT---EEEEEEECGGGCSSSSCCHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC---ceEEEEECCCCCCccchHHHHHHHHHHHHH
Confidence 589999999999999999999876432 2223333334344444433 4789999999876 4455667788
Q ss_pred CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCCH
Q 028884 106 GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADNI 184 (202)
Q Consensus 106 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~i 184 (202)
.+|++++|+|.+++.+... ..+...+.. .+.|+++|+||+|+.+.. ++...++ ..++ +++++||+++.|+
T Consensus 79 ~~~~~i~v~d~~~~~~~~~-~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv 149 (161)
T 2dyk_A 79 DAEVVLFAVDGRAELTQAD-YEVAEYLRR---KGKPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGL 149 (161)
T ss_dssp TCSEEEEEEESSSCCCHHH-HHHHHHHHH---HTCCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSH
T ss_pred hCCEEEEEEECCCcccHhH-HHHHHHHHh---cCCCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCCh
Confidence 9999999999998643322 122222332 368899999999986542 2233344 5566 7999999999999
Q ss_pred HHHHHHHHHHc
Q 028884 185 NQLFEEIAKRL 195 (202)
Q Consensus 185 ~~~~~~l~~~i 195 (202)
+++|++|.+.+
T Consensus 150 ~~l~~~l~~~l 160 (161)
T 2dyk_A 150 EELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999876
No 113
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.94 E-value=8.4e-27 Score=167.24 Aligned_cols=157 Identities=24% Similarity=0.242 Sum_probs=115.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhhhhhcccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG-----------QERYAALAPL 102 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~~~~~~~~ 102 (202)
++|+|+|.+|+|||||+++|.+..+.....++.+..... +... .+.+||+|| ++.+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~-----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK-----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET-----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC-----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 689999999999999999999988765555544433322 2222 588999999 6777777777
Q ss_pred cccC-ccEEEEEEeCCChhHHHHH-HHHHHH---------HHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC
Q 028884 103 YYRG-AAVAVVVYDITSPDSFNKA-QYWVKE---------LQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM 171 (202)
Q Consensus 103 ~~~~-~d~~i~v~d~~~~~s~~~~-~~~~~~---------i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~ 171 (202)
+++. ++++++++++.+..++..+ ..|+.. +......+.|+++|+||+|+.... .++...++...++
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~~~~~ 151 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAEKFEV 151 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHHHHTC
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHHHhhh
Confidence 7776 6766666666666667665 555532 222223579999999999987644 5567777777776
Q ss_pred e-------EEEeccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 172 F-------FIETSAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 172 ~-------~~~~s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
+ ++++||++|.|++++|++|.+.+.+.+.
T Consensus 152 ~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~ 187 (190)
T 2cxx_A 152 PLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQG 187 (190)
T ss_dssp CGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC--
T ss_pred hhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhhc
Confidence 4 7999999999999999999998866543
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=3.3e-26 Score=162.18 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=110.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh----h--c--ccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA----A--L--APL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~----~--~--~~~ 102 (202)
+..+|+|+|.+|+|||||+++|.+..... ...++.+.+.....+.+.+ ..+.+|||||...+. . . ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG---MPLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT---EEEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC---eEEEEEECCCcccchhHHHHHHHHHHHH
Confidence 45899999999999999999999876432 2223333344444555443 468999999975321 1 1 123
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
+++.+|++++|+|++++.++. ...|+..+......++|+++|+||+|+.+.... ++...+.+++++||+++.
T Consensus 80 ~~~~ad~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-------~~~~~~~~~~~~SA~~g~ 151 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDAVD-PAEIWPEFIARLPAKLPITVVRNKADITGETLG-------MSEVNGHALIRLSARTGE 151 (172)
T ss_dssp HHHTCSEEEEEEETTTCCCCS-HHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-------EEEETTEEEEECCTTTCT
T ss_pred HHHhCCEEEEEEECCCCCCHH-HHHHHHHHHHhcccCCCEEEEEECccCCcchhh-------hhhccCCceEEEeCCCCC
Confidence 578899999999999887765 346777776665567999999999998543111 112245689999999999
Q ss_pred CHHHHHHHHHHHcCCC
Q 028884 183 NINQLFEEIAKRLPRP 198 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~~ 198 (202)
|++++|++|.+.+...
T Consensus 152 gv~~l~~~l~~~~~~~ 167 (172)
T 2gj8_A 152 GVDVLRNHLKQSMGFD 167 (172)
T ss_dssp THHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHhhhc
Confidence 9999999999987653
No 115
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.93 E-value=1.1e-26 Score=178.00 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=116.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCC---CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh---cccccccCcc
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDP---TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA---LAPLYYRGAA 108 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~---~~~~~~~~~d 108 (202)
||+++|..|+|||||++++.++.... ...++.+..... + +. .+.+++|||+|+++|.. .+..++++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~--v---~~-~v~LqIWDTAGQErf~~~~l~~~~yyr~a~ 74 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH--F---ST-LIDLAVMELPGQLNYFEPSYDSERLFKSVG 74 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE--E---CS-SSCEEEEECCSCSSSCCCSHHHHHHHTTCS
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE--E---cc-EEEEEEEECCCchhccchhhhhhhhccCCC
Confidence 68999999999999999887654322 234555554432 2 22 27899999999999864 4678899999
Q ss_pred EEEEEEeCCCh--hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC-------CCCChHHHHHHHHH----cCCeEEE
Q 028884 109 VAVVVYDITSP--DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK-------REVPAQDGIEYAEK----NGMFFIE 175 (202)
Q Consensus 109 ~~i~v~d~~~~--~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~-------~~~~~~~~~~~~~~----~~~~~~~ 175 (202)
++|+|||+++. ..+..+..|+..+... .+++|+++++||+|+..+ +.+..+++.+++.. .++.+++
T Consensus 75 ~~IlV~Ditd~~~~~~~~l~~~l~~~~~~-~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~e 153 (331)
T 3r7w_B 75 ALVYVIDSQDEYINAITNLAMIIEYAYKV-NPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYL 153 (331)
T ss_dssp EEEEECCCSSCTTHHHHHHHHHHHHHHHH-CTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEEC
T ss_pred EEEEEEECCchHHHHHHHHHHHHHHHhhc-CCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEE
Confidence 99999999997 3333334445555444 568999999999998754 23445555666664 5788999
Q ss_pred eccCCCCCHHHHHHHHHHHcCCC
Q 028884 176 TSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 176 ~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+||++ .|+.++|..|++.+.+.
T Consensus 154 TSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 154 TSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp CCSSS-SHHHHHHHHHHTTSSTT
T ss_pred eccCC-CcHHHHHHHHHHHHHhh
Confidence 99998 58999999999988764
No 116
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.93 E-value=2.2e-25 Score=160.36 Aligned_cols=159 Identities=21% Similarity=0.256 Sum_probs=110.6
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhh
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYA 97 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 97 (202)
.+....++|+|+|.+|+|||||+++|++...... .++.+.......... +. .+.+||+|| .+.+.
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~~-~~---~~~i~Dt~G~~~~~~~~~~~~~~~ 92 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYLV-NS---KYYFVDLPGYGYAKVSKKERMLWK 92 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEEE-TT---TEEEEECCCBSSSCCCHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEEE-CC---cEEEEECCCCccccCChhhHHHHH
Confidence 3445678999999999999999999999874332 223332222222222 22 478999999 66677
Q ss_pred hcccccccCc---cEEEEEEeCCChhHH--HHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--CChHHHHHHHHH-c
Q 028884 98 ALAPLYYRGA---AVAVVVYDITSPDSF--NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEK-N 169 (202)
Q Consensus 98 ~~~~~~~~~~---d~~i~v~d~~~~~s~--~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~-~ 169 (202)
.++..+++.+ |++++|+|.++..+. ..+..|+. .. +.|+++|+||+|+..... ...++...++.. .
T Consensus 93 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~---~~---~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 166 (195)
T 3pqc_A 93 RLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMK---SL---NIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG 166 (195)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHH---HT---TCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHH---Hc---CCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence 7777666655 999999999876332 23333333 22 689999999999875432 222344455554 3
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 170 GMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 170 ~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
.++++++||+++.|++++|++|.+.+.+
T Consensus 167 ~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 167 EYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 4689999999999999999999998875
No 117
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=4.1e-26 Score=187.82 Aligned_cols=167 Identities=20% Similarity=0.370 Sum_probs=125.5
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEE------EEec-CCcEEEEEEEeCCChhhhhhccc
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQT------IALQ-DSTTVKFEIWDTAGQERYAALAP 101 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~i~D~~G~~~~~~~~~ 101 (202)
.....+||+++|.+|+|||||+++|.+..+.....++.+....... +... ++..+.+.+||+||++.+.....
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 3456899999999999999999999998877666667666655432 1111 12247899999999999999999
Q ss_pred ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
.+++.+|++|+|+|+++. +.+..|+..+.... ++.|+++|+||+|+.+...+..++...++...+++++++||++|
T Consensus 117 ~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g 192 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNG 192 (535)
T ss_dssp HHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC---
T ss_pred HHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcc
Confidence 999999999999999875 45677888887763 47899999999999877777788888888888999999999999
Q ss_pred CCHHHHHHHHHHHcCCCC
Q 028884 182 DNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 182 ~~i~~~~~~l~~~i~~~~ 199 (202)
.|++++++.|.+.+.+..
T Consensus 193 ~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 193 DGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp --CTTHHHHHHHHHTCTT
T ss_pred cCHHHHHHHHHHHHhccc
Confidence 999999999999887653
No 118
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.93 E-value=1.3e-25 Score=168.69 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=116.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc------ccccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL------APLYY 104 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~------~~~~~ 104 (202)
.+.++|+++|.+|+|||||+|+|.+..+.....+..+.......+...+ ..+.+||+||...+... ...++
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~e~v~~~~~ 79 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG---YTINLIDLPGTYSLGYSSIDEKIARDYL 79 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT---EEEEEEECCCCSSCCSSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC---eEEEEEECCCcCccCCCCHHHHHHHHHH
Confidence 3578999999999999999999998765433344444444444444322 68999999998765532 24444
Q ss_pred --cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 105 --RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 105 --~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
..+|++++|+|+++.++. ..|+..+.. .+.|+++|+||+|+.+..... .+...++..++++++++||++|.
T Consensus 80 ~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~ 152 (258)
T 3a1s_A 80 LKGDADLVILVADSVNPEQS---LYLLLEILE---MEKKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGE 152 (258)
T ss_dssp HHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TTCCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCT
T ss_pred hhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cCCCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCc
Confidence 579999999999986543 335555543 378999999999986544443 24677888889999999999999
Q ss_pred CHHHHHHHHHHHcC
Q 028884 183 NINQLFEEIAKRLP 196 (202)
Q Consensus 183 ~i~~~~~~l~~~i~ 196 (202)
|++++|++|.+.+.
T Consensus 153 gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 153 GLEELKEKIVEYAQ 166 (258)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999998765
No 119
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.92 E-value=2.6e-25 Score=163.59 Aligned_cols=164 Identities=11% Similarity=0.088 Sum_probs=108.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCC-CC-CCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF-DP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYA 97 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~ 97 (202)
....++|+|+|.+|+|||||+++|++... .. ...+..+.... ...........+.+||||| .+.+.
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~ 103 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHIN--YFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWE 103 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEE--EEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceE--EEEecCCCCCcEEEEcCCCCCcccCChhhHHHHH
Confidence 34579999999999999999999999763 12 22222222222 2223212225799999999 44555
Q ss_pred hcccccccC---ccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC--hHHHHHHHHH----
Q 028884 98 ALAPLYYRG---AAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEK---- 168 (202)
Q Consensus 98 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~---- 168 (202)
..+..+++. +|++|+|+|.+++.+. ....++..+.. .+.|+++|+||+|+....... ..........
T Consensus 104 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~ 179 (223)
T 4dhe_A 104 QLLSSYLQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA 179 (223)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence 555555554 7889999999976332 22445555544 468999999999986543221 1112222222
Q ss_pred ---cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 169 ---NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 169 ---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
...+++++||+++.|++++|++|.+.+....
T Consensus 180 ~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~ 213 (223)
T 4dhe_A 180 GYAGKLTVQLFSALKRTGLDDAHALIESWLRPAA 213 (223)
T ss_dssp TCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC---
T ss_pred ccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccC
Confidence 5678999999999999999999999987654
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.92 E-value=3.2e-25 Score=167.61 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=114.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh------hccccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA------ALAPLYYR 105 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~------~~~~~~~~ 105 (202)
+.++|+++|.+|+|||||+|+|.+........+..+....... +.. ...+.+||+||...+. .+...++.
T Consensus 2 ~~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~--~~~--~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~ 77 (272)
T 3b1v_A 2 SMTEIALIGNPNSGKTSLFNLITGHNQRVGNWPGVTVERKSGL--VKK--NKDLEIQDLPGIYSMSPYSPEAKVARDYLL 77 (272)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEE--CTT--CTTEEEEECCCCSCSSCSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCCcEEEEEEE--Eec--CCeEEEEECCCcCccCCCChHHHHHHHHHh
Confidence 3589999999999999999999987643333343333322222 222 2579999999987664 34455554
Q ss_pred --CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 106 --GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 106 --~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
.+|++|+|+|+++.++ ...|...+.. .+.|+++|+||+|+.+..... .+...++..++++++++||++|.|
T Consensus 78 ~~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~g 150 (272)
T 3b1v_A 78 SQRADSILNVVDATNLER---NLYLTTQLIE---TGIPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTG 150 (272)
T ss_dssp TTCCSEEEEEEEGGGHHH---HHHHHHHHHH---TCSCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBS
T ss_pred cCCCCEEEEEecCCchHh---HHHHHHHHHh---cCCCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCC
Confidence 5999999999998643 3445555544 378999999999986543333 345677888899999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028884 184 INQLFEEIAKRLPRP 198 (202)
Q Consensus 184 i~~~~~~l~~~i~~~ 198 (202)
++++|++|.+.+...
T Consensus 151 i~el~~~i~~~~~~~ 165 (272)
T 3b1v_A 151 VDQVVKKAAHTTTST 165 (272)
T ss_dssp HHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHhhc
Confidence 999999999987543
No 121
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.8e-25 Score=167.79 Aligned_cols=151 Identities=17% Similarity=0.115 Sum_probs=113.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh----------ccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA----------LAPLY 103 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~~ 103 (202)
.+|+++|.+|+|||||+|+|.+........++.+.+.....+.+.+ ..+.+||+||...+.. ....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~---~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGE---HLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETT---EEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECC---eEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 4799999999999999999999765444445555555555555543 4899999999865543 44556
Q ss_pred c--cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCC
Q 028884 104 Y--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTA 181 (202)
Q Consensus 104 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 181 (202)
+ ..+|++|+|+|+++.++...+. ..+. ..+.|+++|+||+|+.+..... .....+...++++++++||++|
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l~---~~l~---~~~~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g 151 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYLT---SQLF---ELGKPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKN 151 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHHH---HHHT---TSCSCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGT
T ss_pred HhhCCCCEEEEEeeCCCchhHHHHH---HHHH---HcCCCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCC
Confidence 6 7899999999999965444332 2233 3378999999999986543332 2345577788999999999999
Q ss_pred CCHHHHHHHHHHH
Q 028884 182 DNINQLFEEIAKR 194 (202)
Q Consensus 182 ~~i~~~~~~l~~~ 194 (202)
.|++++|++|.+.
T Consensus 152 ~gi~el~~~i~~~ 164 (256)
T 3iby_A 152 IGIPALQQSLLHC 164 (256)
T ss_dssp BSHHHHHHHHHTC
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999887
No 122
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.92 E-value=1.7e-25 Score=169.61 Aligned_cols=156 Identities=15% Similarity=0.146 Sum_probs=115.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh----------cccc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA----------LAPL 102 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~----------~~~~ 102 (202)
.++|+++|.+|+|||||+|+|.+........++.+.+.....+...+ ..+.+|||||...+.. .+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~---~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD---HQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS---CEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC---CceEEEECcCCCccccccccCCHHHHHHHH
Confidence 58999999999999999999999765444445555555555555443 4688999999766542 1222
Q ss_pred cc--cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC
Q 028884 103 YY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT 180 (202)
Q Consensus 103 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 180 (202)
++ +.+|++|+|+|+++.+.... |...+... ++|+++|+||+|+.+..... .....++..++++++++||++
T Consensus 80 ~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~ 152 (274)
T 3i8s_A 80 YILSGDADLLINVVDASNLERNLY---LTLQLLEL---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTR 152 (274)
T ss_dssp HHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGG
T ss_pred HHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCC
Confidence 22 68999999999998654433 33334433 68999999999986543322 234667778899999999999
Q ss_pred CCCHHHHHHHHHHHcCCC
Q 028884 181 ADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 181 ~~~i~~~~~~l~~~i~~~ 198 (202)
|.|++++|++|.+.+...
T Consensus 153 g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 153 GRGIEALKLAIDRYKANE 170 (274)
T ss_dssp GHHHHHHHHHHHTCCCCC
T ss_pred CCCHHHHHHHHHHHHhcC
Confidence 999999999999988754
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.91 E-value=1.5e-24 Score=164.28 Aligned_cols=158 Identities=22% Similarity=0.190 Sum_probs=116.4
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh------cccccc-
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA------LAPLYY- 104 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~------~~~~~~- 104 (202)
+.++|+++|++|+|||||+++|.+..+.....++.+.+.....+.+.+ ..+.+||+||...+.. .+..++
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~---~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 78 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYRE---KEFLVVDLPGIYSLTAHSIDELIARNFIL 78 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETT---EEEEEEECCCCSCCCSSCHHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECC---ceEEEEeCCCccccccCCHHHHHHHHhhh
Confidence 358999999999999999999998766444445555555555555433 4699999999876544 344444
Q ss_pred -cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 105 -RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 105 -~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
..+|++++|+|+++.. ....|...+.... ..|+++|+||+|+.+...... ....+...++++++++|+++|.|
T Consensus 79 ~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~g 152 (271)
T 3k53_A 79 DGNADVIVDIVDSTCLM---RNLFLTLELFEME--VKNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEG 152 (271)
T ss_dssp TTCCSEEEEEEEGGGHH---HHHHHHHHHHHTT--CCSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBT
T ss_pred ccCCcEEEEEecCCcch---hhHHHHHHHHhcC--CCCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCC
Confidence 6799999999999863 3333444444331 389999999999754333222 26667778899999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 028884 184 INQLFEEIAKRLPRP 198 (202)
Q Consensus 184 i~~~~~~l~~~i~~~ 198 (202)
+.++|+.+.+.+...
T Consensus 153 i~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 153 VEELKRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887543
No 124
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.91 E-value=2.9e-25 Score=162.85 Aligned_cols=144 Identities=15% Similarity=0.227 Sum_probs=102.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 106 (202)
..+.++|+|+|++|+|||||+++|.+..+... ..++.+..+ ....+.+||+||++.++..+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~Dt~G~~~~~~~~~~~~~~ 78 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----------DGSGVTLVDFPGHVKLRYKLSDYLKT 78 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG----------GGSSCEEEECCCCGGGTHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe----------eCceEEEEECCCcHHHHHHHHHHHHh
Confidence 45679999999999999999999999876432 222222111 22579999999999998888888776
Q ss_pred ----ccEEEEEEeCC-ChhHHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCCCC------hHHHHHHHHHcCC
Q 028884 107 ----AAVAVVVYDIT-SPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKREVP------AQDGIEYAEKNGM 171 (202)
Q Consensus 107 ----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~~~~~ 171 (202)
+|++|+|+|++ ++.++.....|+..+... ...++|+++|+||+|+....... ..+...++...++
T Consensus 79 ~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~ 158 (218)
T 1nrj_B 79 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKK 158 (218)
T ss_dssp HGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhc
Confidence 89999999999 888888888888776543 34689999999999997665433 3445556666666
Q ss_pred eEEEeccCCCCC
Q 028884 172 FFIETSAKTADN 183 (202)
Q Consensus 172 ~~~~~s~~~~~~ 183 (202)
.++++|++++.+
T Consensus 159 ~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 159 SLNEVERKINEE 170 (218)
T ss_dssp HHHC--------
T ss_pred cccccccccccc
Confidence 788888887764
No 125
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.91 E-value=7.6e-24 Score=162.34 Aligned_cols=156 Identities=18% Similarity=0.177 Sum_probs=109.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc-ccceeEEEEEEEecCCcEEEEEEEeCCChhh--------hhhcccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV-TVGASFLSQTIALQDSTTVKFEIWDTAGQER--------YAALAPL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--------~~~~~~~ 102 (202)
+..+|+++|.+|+|||||+|+|++..+...... ..+.......... .. ..+.+|||||... +......
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~--~~-~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE--GR-RQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE--TT-EEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe--CC-cEEEEecCccccchhhHHHHHHHHHHHH
Confidence 467899999999999999999999877543322 2222221111221 22 6899999999654 4556667
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHH-HHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH--cCCeEEEeccC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWV-KELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK--NGMFFIETSAK 179 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~-~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~ 179 (202)
+++.+|++++|+|++++.+.. ..|+ +.+... ..+.|+++|+||+|+...... ....... ...+++++||+
T Consensus 83 ~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~-~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~~~~~~~~~iSA~ 155 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPPTPE--DELVARALKPL-VGKVPILLVGNKLDAAKYPEE----AMKAYHELLPEAEPRMLSAL 155 (301)
T ss_dssp HTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGG-TTTSCEEEEEECGGGCSSHHH----HHHHHHHTSTTSEEEECCTT
T ss_pred HHhcCCEEEEEEECCCCCChH--HHHHHHHHHhh-cCCCCEEEEEECcccCCchHH----HHHHHHHhcCcCcEEEEeCC
Confidence 889999999999999874433 3343 445443 247899999999998653220 1222222 23568999999
Q ss_pred CCCCHHHHHHHHHHHcCC
Q 028884 180 TADNINQLFEEIAKRLPR 197 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~ 197 (202)
+|.|++++++.|.+.+.+
T Consensus 156 ~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 156 DERQVAELKADLLALMPE 173 (301)
T ss_dssp CHHHHHHHHHHHHTTCCB
T ss_pred CCCCHHHHHHHHHHhccc
Confidence 999999999999988754
No 126
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.91 E-value=7e-24 Score=171.35 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=99.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc--------cc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA--------PL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------~~ 102 (202)
..++|+|+|.+|+|||||+|+|.+..... ...+..+.+.....+.+.+ +.+.+|||||...+...+ ..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g---~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK---TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT---EEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC---eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 46899999999999999999999875322 2233334444344444433 689999999987655333 44
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
+++.+|++|+|+|++++.++..+..+...+.... ++|+++|+||+|+...... ....+......+++++||++|.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~ 383 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGD 383 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTB
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCC
Confidence 6889999999999999877654444444344332 7999999999998765433 2233333324679999999999
Q ss_pred CHHHHHHHHHHHcC
Q 028884 183 NINQLFEEIAKRLP 196 (202)
Q Consensus 183 ~i~~~~~~l~~~i~ 196 (202)
|+++++++|.+.+.
T Consensus 384 GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 384 GIDTLKQHMGDLVK 397 (476)
T ss_dssp SHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999886
No 127
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.91 E-value=3.2e-24 Score=167.29 Aligned_cols=117 Identities=15% Similarity=0.276 Sum_probs=97.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------hhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~ 151 (202)
+.+++||++|++.++..|..++++++++|+|||+++ ..++.+...|+..+... ...++|++||+||+|+
T Consensus 193 ~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL 272 (353)
T 1cip_A 193 LHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDL 272 (353)
T ss_dssp EEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCc
Confidence 789999999999999999999999999999999999 45688888888877654 2357999999999998
Q ss_pred CCCC---------------CCChHHHHHHHH-----------HcCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 152 HEKR---------------EVPAQDGIEYAE-----------KNGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 152 ~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
.++. .+..+++..++. ..++.++++||+++.|+.++|+++.+.+.+..
T Consensus 273 ~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~~ 346 (353)
T 1cip_A 273 FEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKNN 346 (353)
T ss_dssp HHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHHH
Confidence 4321 255677777776 35677999999999999999999998876543
No 128
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.91 E-value=5.9e-25 Score=174.99 Aligned_cols=164 Identities=18% Similarity=0.181 Sum_probs=116.5
Q ss_pred CCCCCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc----
Q 028884 25 GSSDAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL---- 99 (202)
Q Consensus 25 ~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~---- 99 (202)
++..+....++|+|+|..++|||||+++|++..+.. ...+..+.+.....+.+.+. ..+.+|||||+..+..+
T Consensus 26 m~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~l~liDTpG~~d~~~l~~~~ 103 (423)
T 3qq5_A 26 MRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI--GPVTLVDTPGLDDVGELGRLR 103 (423)
T ss_dssp CCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT--EEEEEEECSSTTCCCTTCCCC
T ss_pred cccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC--CeEEEEECcCCCcccchhHHH
Confidence 344455678999999999999999999999877532 22333444444455555443 37999999999876544
Q ss_pred ---ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEe
Q 028884 100 ---APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIET 176 (202)
Q Consensus 100 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (202)
+..+++.+|++|+|+|++.. .....|+..+... ++|+++|+||+|+...... +....++..++++++++
T Consensus 104 ~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~v 175 (423)
T 3qq5_A 104 VEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLV 175 (423)
T ss_dssp HHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCC
T ss_pred HHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEE
Confidence 33478889999999999332 3446677766655 7899999999998765543 45556666678899999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
||++|.|++++|++|.+.+.+.
T Consensus 176 SAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 176 SALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp SSCCTTSTTTHHHHHHHHSCCC
T ss_pred ECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999999553
No 129
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.90 E-value=9.2e-24 Score=165.18 Aligned_cols=115 Identities=15% Similarity=0.218 Sum_probs=87.9
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------hhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~ 151 (202)
+.+++||++|++.++..|..++++++++|+|+|+++ ..++.....|+..+... ...++|++|++||+|+
T Consensus 201 ~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL 280 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDL 280 (362)
T ss_dssp EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHH
T ss_pred eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhh
Confidence 789999999999999999999999999999999999 67898888888887654 2357999999999998
Q ss_pred CCCC----------------CCChHHHHHHHH-----------HcCCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 152 HEKR----------------EVPAQDGIEYAE-----------KNGMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 152 ~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
.++. .+..+++..++. ...+.++++||+++.|++++|+++.+.+.+
T Consensus 281 ~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~ 353 (362)
T 1zcb_A 281 LEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILH 353 (362)
T ss_dssp HHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHH
Confidence 5321 255666666652 345678999999999999999999987754
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.90 E-value=7.6e-24 Score=170.27 Aligned_cols=159 Identities=21% Similarity=0.187 Sum_probs=111.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCCh----------hhhhhc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ----------ERYAAL 99 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~ 99 (202)
+..++|+++|.+|+|||||+|+|++.... ....++.+.+.....+.+.+ ..+.+|||||+ +.|..+
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~e~~~~~ 249 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ---QEFVIVDTAGMRKKGKVYETTEKYSVL 249 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT---EEEEETTHHHHTCBTTBCCCCSHHHHH
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC---eEEEEEECCCcCcCccccchHHHHHHH
Confidence 45799999999999999999999987653 22223333333333344433 46999999997 445444
Q ss_pred cc-ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHH-H----HcCCeE
Q 028884 100 AP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYA-E----KNGMFF 173 (202)
Q Consensus 100 ~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~-~----~~~~~~ 173 (202)
.. .+++.+|++++|+|++++.+++.. .|+..+.. .+.|+++|+||+|+.+......++..... . ..++++
T Consensus 250 ~~~~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~ 325 (436)
T 2hjg_A 250 RALKAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPI 325 (436)
T ss_dssp HHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCE
T ss_pred HHHHHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCE
Confidence 33 467889999999999998777664 46666654 47899999999998765544333332222 2 236789
Q ss_pred EEeccCCCCCHHHHHHHHHHHcC
Q 028884 174 IETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+++||++|.|++++|+.+.+.+.
T Consensus 326 ~~~SA~tg~~v~~l~~~i~~~~~ 348 (436)
T 2hjg_A 326 LFMSALTKKRIHTLMPAIIKASE 348 (436)
T ss_dssp EECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEecccCCCHHHHHHHHHHHHH
Confidence 99999999999999999887664
No 131
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.90 E-value=1.5e-22 Score=161.21 Aligned_cols=169 Identities=17% Similarity=0.103 Sum_probs=118.2
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEE-----------------EEEecCCcEEEEEEEeCC
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ-----------------TIALQDSTTVKFEIWDTA 91 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~i~D~~ 91 (202)
..++.++|+++|++++|||||+++|++.................. ...........+.+||||
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP 83 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP 83 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence 345689999999999999999999998543221111000000000 000001122689999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC--hHHHHHHHHH-
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP--AQDGIEYAEK- 168 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~--~~~~~~~~~~- 168 (202)
|++.|...+...+..+|++|+|+|++++.++.+..+|+..+.... ..|+++|+||+|+.+..... .++...+...
T Consensus 84 Gh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~ 161 (403)
T 3sjy_A 84 GHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGT 161 (403)
T ss_dssp CCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHHHHHTTS
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHHHHHHHHHHhh
Confidence 999999988889999999999999999876777777877776653 25799999999986532211 1112222221
Q ss_pred --cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 169 --NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 169 --~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
..++++++||++|.|+++++++|.+.+..+.
T Consensus 162 ~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 162 WAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp TTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred CCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 1568999999999999999999999887654
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.90 E-value=1.2e-23 Score=163.40 Aligned_cols=161 Identities=20% Similarity=0.193 Sum_probs=116.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhcccccc---cC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAPLYY---RG 106 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~~~~---~~ 106 (202)
.+|+|+|.+++|||||+++|++........+..+.......+.+.+. ..+.+||+||..+ +..+...++ ..
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~~--~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~ 236 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDG--RSFVMADLPGLIEGAHQGVGLGHQFLRHIER 236 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECSSS--CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCceEEEEEeCCC--ceEEEecCCCCcccccccchhHHHHHHHHHh
Confidence 36889999999999999999986532222222222222333444332 4799999999654 222333343 45
Q ss_pred ccEEEEEEeCCC---hhHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC--CeEEEeccC
Q 028884 107 AAVAVVVYDITS---PDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAK 179 (202)
Q Consensus 107 ~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~ 179 (202)
+|++|+|+|+++ ..+++.+..|+..+.... ..++|+++|+||+|+.... +....+...+. .+++++||+
T Consensus 237 ~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~~~~~v~~iSA~ 312 (342)
T 1lnz_A 237 TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFPISAV 312 (342)
T ss_dssp CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCCCSSC
T ss_pred ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhhcCCCEEEEECC
Confidence 999999999998 677888888988888763 2579999999999986432 34455666665 679999999
Q ss_pred CCCCHHHHHHHHHHHcCCCCC
Q 028884 180 TADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~~~~ 200 (202)
++.|+++++++|.+.+.+.+.
T Consensus 313 tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 313 TREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSSTTHHHHHHHHHHHTSCCC
T ss_pred CCcCHHHHHHHHHHHHhhCcc
Confidence 999999999999999987654
No 133
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.90 E-value=3e-22 Score=159.75 Aligned_cols=168 Identities=17% Similarity=0.191 Sum_probs=107.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCC---CCCCcc--ccceeEEEEEEEe-------------cC-C----cEEEEE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQF---DPTSKV--TVGASFLSQTIAL-------------QD-S----TTVKFE 86 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~---~~~~~~--~~~~~~~~~~~~~-------------~~-~----~~~~~~ 86 (202)
+++.++|+++|+.++|||||+++|.+... ...... +....+....+.. .+ + ....+.
T Consensus 5 r~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 84 (408)
T 1s0u_A 5 SQAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS 84 (408)
T ss_dssp CCCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred cCCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence 45679999999999999999999996432 222223 2222222222211 10 1 126899
Q ss_pred EEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--ChHHHHH
Q 028884 87 IWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIE 164 (202)
Q Consensus 87 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~ 164 (202)
+||+||++.|.......+..+|++|+|+|++++....+..+.+..+.... ..|+++++||+|+...... ..++...
T Consensus 85 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~--~~~iivv~NK~Dl~~~~~~~~~~~~i~~ 162 (408)
T 1s0u_A 85 FVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILG--IDKIIIVQNKIDLVDEKQAEENYEQIKE 162 (408)
T ss_dssp EEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECTTSSCTTTTTTHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcC--CCeEEEEEEccCCCCHHHHHHHHHHHHH
Confidence 99999999998888788888999999999996531222233333333332 2479999999998765432 2344455
Q ss_pred HHHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 165 YAEK---NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 165 ~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
+... .+++++++||++|.|+++++++|.+.+..+.
T Consensus 163 ~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 163 FVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp HHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred HHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 5543 3678999999999999999999999887653
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.90 E-value=7.9e-23 Score=160.46 Aligned_cols=160 Identities=18% Similarity=0.174 Sum_probs=116.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh---------hccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA---------ALAP 101 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~---------~~~~ 101 (202)
...++|+++|.+|+|||||+++|.+........+..+.......+... . ..+.+|||||..... ....
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~--~-~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 241 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG--Y-FRYQIIDTPGLLDRPISERNEIEKQAIL 241 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET--T-EEEEEEECTTTSSSCSTTSCHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec--C-ceEEEEeCCCccccchhhhhHHHHHHHH
Confidence 356899999999999999999999876322222222223323333222 2 679999999974321 1112
Q ss_pred ccccCccEEEEEEeCCChh--HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccC
Q 028884 102 LYYRGAAVAVVVYDITSPD--SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAK 179 (202)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 179 (202)
.+...+|++++|+|++++. ++.....|+..+..... +.|+++|+||+|+..... .++...++...+++++++||+
T Consensus 242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~ 318 (357)
T 2e87_A 242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISAL 318 (357)
T ss_dssp GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTT
T ss_pred HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCC
Confidence 3445689999999998876 67777888888876533 799999999999865432 244556666788899999999
Q ss_pred CCCCHHHHHHHHHHHcC
Q 028884 180 TADNINQLFEEIAKRLP 196 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~ 196 (202)
+|.|+++++++|.+.+.
T Consensus 319 ~g~gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 319 KGTGIDLVKEEIIKTLR 335 (357)
T ss_dssp TTBTHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHH
Confidence 99999999999998764
No 135
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.90 E-value=2.1e-23 Score=168.58 Aligned_cols=160 Identities=21% Similarity=0.202 Sum_probs=115.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCC----------hhhhhh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG----------QERYAA 98 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~ 98 (202)
....++|+++|.+++|||||+++|.+.... ....++.+.+.....+...+ ..+.+||||| .+.|..
T Consensus 192 ~~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~e~~~~ 268 (456)
T 4dcu_A 192 NEEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ---QEFVIVDTAGMRKKGKVYETTEKYSV 268 (456)
T ss_dssp CTTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT---EEEEETTGGGTTTBTTBCCCCSHHHH
T ss_pred ccccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC---ceEEEEECCCCCcCcccchHHHHHHH
Confidence 456799999999999999999999976421 12222233332223333333 4799999999 566665
Q ss_pred ccc-ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc-----CCe
Q 028884 99 LAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN-----GMF 172 (202)
Q Consensus 99 ~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~-----~~~ 172 (202)
... .+++.+|++|+|+|++++.+ .....|+..+.. .++|+++|+||+|+.+......++..+.+... .++
T Consensus 269 ~~~~~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (456)
T 4dcu_A 269 LRALKAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAP 344 (456)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCC
Confidence 544 47788999999999998643 233445555554 36899999999999876666666666666654 578
Q ss_pred EEEeccCCCCCHHHHHHHHHHHcC
Q 028884 173 FIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 173 ~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
++++||++|.|++++|++|.+.+.
T Consensus 345 ~~~~SA~~g~gv~~l~~~i~~~~~ 368 (456)
T 4dcu_A 345 ILFMSALTKKRIHTLMPAIIKASE 368 (456)
T ss_dssp EEECCTTTCTTGGGHHHHHHHHHH
T ss_pred EEEEcCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999988763
No 136
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.89 E-value=2.4e-22 Score=166.05 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=114.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC--CCC-----CC--------ccccceeEEEEEEEec--CCcEEEEEEEeCCChh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ--FDP-----TS--------KVTVGASFLSQTIALQ--DSTTVKFEIWDTAGQE 94 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~--~~~-----~~--------~~~~~~~~~~~~~~~~--~~~~~~~~i~D~~G~~ 94 (202)
+..+|+|+|+.++|||||+++|+... ... .. ....+.......+.+. ++..+.+.+|||||+.
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 46899999999999999999998621 110 00 0111221112223232 4555899999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCe--
Q 028884 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMF-- 172 (202)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~-- 172 (202)
.|...+..+++.+|++|+|+|++++.+++....|+.... .++|+++|+||+|+.... ......++....+..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~ 156 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MDLEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDAT 156 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCT
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CCCCEEEeeeccCccccc--HHHHHHHHHHHhCCCcc
Confidence 999889999999999999999999877777777765543 368999999999987543 223344555555654
Q ss_pred -EEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 173 -FIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 173 -~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
++++||++|.|+++++++|.+.+..+.
T Consensus 157 ~vi~vSAktg~GI~~Ll~~I~~~lp~p~ 184 (599)
T 3cb4_D 157 DAVRCSAKTGVGVQDVLERLVRDIPPPE 184 (599)
T ss_dssp TCEEECTTTCTTHHHHHHHHHHHSCCCC
T ss_pred eEEEeecccCCCchhHHHHHhhcCCCcc
Confidence 899999999999999999999998764
No 137
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.89 E-value=3.8e-22 Score=159.29 Aligned_cols=169 Identities=18% Similarity=0.197 Sum_probs=113.7
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCC---CCCccccce--eEEEEEEEe-------------cC-Cc----EEEE
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGA--SFLSQTIAL-------------QD-ST----TVKF 85 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~--~~~~~~~~~-------------~~-~~----~~~~ 85 (202)
.+++.++|+++|+.++|||||+++|.+.... .......+. .+....+.. .+ +. ...+
T Consensus 6 ~~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 6 SRQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEE
T ss_pred cCCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEE
Confidence 4567899999999999999999999964322 222232233 222222211 00 11 2689
Q ss_pred EEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--CChHHHH
Q 028884 86 EIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGI 163 (202)
Q Consensus 86 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~ 163 (202)
.+||+||++.|.......+..+|++|+|+|++++....+..+.+..+.... ..|+++|+||+|+..... ...++..
T Consensus 86 ~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~~~i~ 163 (410)
T 1kk1_A 86 SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALENYRQIK 163 (410)
T ss_dssp EEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred EEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcC--CCcEEEEEECccCCCHHHHHHHHHHHH
Confidence 999999999998877777888999999999996531222233333333332 247999999999865321 1122333
Q ss_pred HHHHH---cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 164 EYAEK---NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 164 ~~~~~---~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
.+... ...+++++||++|.|+++++++|.+.+..+.
T Consensus 164 ~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 164 EFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp HHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 44333 3578999999999999999999999887653
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.89 E-value=4.1e-22 Score=164.40 Aligned_cols=163 Identities=20% Similarity=0.239 Sum_probs=116.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC--CCCC-----C--------ccccceeEEEEEEEe--cCCcEEEEEEEeCCCh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ--FDPT-----S--------KVTVGASFLSQTIAL--QDSTTVKFEIWDTAGQ 93 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~--~~~~-----~--------~~~~~~~~~~~~~~~--~~~~~~~~~i~D~~G~ 93 (202)
++..+|+++|+.++|||||+++|+... .... . ...++.......+.+ .++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 457899999999999999999998621 1100 0 011111111112222 2455589999999999
Q ss_pred hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC--
Q 028884 94 ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-- 171 (202)
Q Consensus 94 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-- 171 (202)
..|...+..+++.+|++|+|+|++++.+.+....|+.... .++|+++|+||+|+.... ......++....+.
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--HHHHHHHHHHhhCCCc
Confidence 9999888888999999999999999877777777765543 378999999999986543 22333445555565
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 172 -FFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 172 -~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
.++++||++|.|++++|++|++.+..+.
T Consensus 158 ~~vi~vSAktg~GI~~Lle~I~~~lp~p~ 186 (600)
T 2ywe_A 158 EEAILASAKEGIGIEEILEAIVNRIPPPK 186 (600)
T ss_dssp GGCEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred ccEEEEEeecCCCchHHHHHHHHhccccc
Confidence 3899999999999999999999998764
No 139
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=149.37 Aligned_cols=164 Identities=15% Similarity=0.194 Sum_probs=106.3
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc--ccceeEEEEEEEecCCcEEEEEEEeCCC-----------hhh
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQDSTTVKFEIWDTAG-----------QER 95 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~D~~G-----------~~~ 95 (202)
+....++|+|+|.+|+|||||+|+|++........+ +.+.........+.+ ..+.+||||| ...
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~liDTpG~~~~~~~~~~~~~~ 101 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE---TELVVVDTPGIFDTEVPNAETSKE 101 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETT---EEEEEEECCSCC-----CHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC---ceEEEEECCCccCCCCCHHHHHHH
Confidence 345689999999999999999999999876544443 233333333333333 5799999999 334
Q ss_pred hhhcccccccCccEEEEEEeCCChhH--HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC------hHHHHHHHH
Q 028884 96 YAALAPLYYRGAAVAVVVYDITSPDS--FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP------AQDGIEYAE 167 (202)
Q Consensus 96 ~~~~~~~~~~~~d~~i~v~d~~~~~s--~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~------~~~~~~~~~ 167 (202)
+...+..+.+.+|++|+|+|+++... ...+..+...+... ...|+++|+||+|+.....+. .+....+..
T Consensus 102 ~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~--~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 102 IIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGER--ARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD 179 (239)
T ss_dssp HHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHH--HGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhh--ccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence 55555666778999999999875432 22222222222211 245899999999986654332 245677788
Q ss_pred HcCCeEEEeccCCC-----CCHHHHHHHHHHHcCC
Q 028884 168 KNGMFFIETSAKTA-----DNINQLFEEIAKRLPR 197 (202)
Q Consensus 168 ~~~~~~~~~s~~~~-----~~i~~~~~~l~~~i~~ 197 (202)
.++..++.++...+ .++.++|+.+...+.+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 88888888877644 6899999988877754
No 140
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.88 E-value=2.5e-22 Score=162.96 Aligned_cols=159 Identities=16% Similarity=0.122 Sum_probs=109.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC-------CCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLY 103 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~ 103 (202)
.+.++|+++|++++|||||+++|.+.. .........+.+.....+.+.+ ..+.+||+||++.|...+...
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN---YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT---EEEEECCCSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC---EEEEEEECCChHHHHHHHHHH
Confidence 357999999999999999999999866 1222222333333333344432 689999999999998888888
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--CChHHHHHHHHHc----CCeEEEec
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKN----GMFFIETS 177 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~----~~~~~~~s 177 (202)
+..+|++|+|+|++++.. .+..+++..+... ++|+++|+||+|+..... ...++...+.... ..+++++|
T Consensus 94 ~~~aD~~ilVvda~~g~~-~qt~e~l~~~~~~---~ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vS 169 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPK-TQTGEHMLILDHF---NIPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPIS 169 (482)
T ss_dssp TTSCCEEEEEEETTTCSC-HHHHHHHHHHHHT---TCCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECC
T ss_pred HhhCCEEEEEEecCCCcc-HHHHHHHHHHHHc---CCCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEE
Confidence 999999999999998421 1222333334333 678899999999875321 1123344444444 57899999
Q ss_pred cCCCCCHHHHHHHHHHHcC
Q 028884 178 AKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 178 ~~~~~~i~~~~~~l~~~i~ 196 (202)
|++|.|+++++++|.+.+.
T Consensus 170 A~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 170 AKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp TTTCTTHHHHHHHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHhhc
Confidence 9999999999999998764
No 141
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.88 E-value=6.1e-22 Score=151.88 Aligned_cols=160 Identities=16% Similarity=0.142 Sum_probs=108.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChh---------hhhhcc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQE---------RYAALA 100 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~---------~~~~~~ 100 (202)
.+..+|+++|++|+|||||+|+|++..+..... +..+.......+. .+. ..+.+|||||.. .+....
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~--~~~-~~i~~iDTpG~~~~~~~~l~~~~~~~~ 82 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHT--EGA-YQAIYVDTPGLHMEEKRAINRLMNKAA 82 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEE--ETT-EEEEEESSSSCCHHHHHHHHHHHTCCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEE--ECC-eeEEEEECcCCCccchhhHHHHHHHHH
Confidence 345689999999999999999999976532221 1111111111122 122 689999999986 234455
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccC
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~ 179 (202)
..+++.+|++++|+|+++ +.....|+..... ..+.|+++|+||+|+.............+....+. .++++|++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~--~~~~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~ 157 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR--EGKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAE 157 (301)
T ss_dssp TSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH--SSSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTT
T ss_pred HHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH--hcCCCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECC
Confidence 677889999999999977 2222233332222 34789999999999865222222334445444565 69999999
Q ss_pred CCCCHHHHHHHHHHHcCCC
Q 028884 180 TADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~~~ 198 (202)
++.|+.++++.|.+.+.+.
T Consensus 158 ~g~~v~~l~~~i~~~l~~~ 176 (301)
T 1ega_A 158 TGLNVDTIAAIVRKHLPEA 176 (301)
T ss_dssp TTTTHHHHHHHHHTTCCBC
T ss_pred CCCCHHHHHHHHHHhCCcC
Confidence 9999999999999887643
No 142
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.88 E-value=1.5e-22 Score=163.68 Aligned_cols=152 Identities=21% Similarity=0.280 Sum_probs=109.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChh-hhhh--------cccc
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-RYAA--------LAPL 102 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-~~~~--------~~~~ 102 (202)
.++|+++|.+|+|||||+|+|.+.... ....+..+.+.....+.+.+ ..+.+|||||.. .+.. ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g---~~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG---ILFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT---EEEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC---eEEEEEECCCccccchhhHHHHHHHHHHH
Confidence 489999999999999999999987643 22333344444444555533 579999999987 5432 2234
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
+++.+|++|+|+|++++.+++... +++.+ .++|+++|+||+|+.+. ...++...+. ..+.+++++||++|.
T Consensus 320 ~~~~aD~vl~VvD~s~~~s~~~~~-il~~l-----~~~piivV~NK~DL~~~--~~~~~~~~~~-~~~~~~i~iSAktg~ 390 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLDEEDRK-ILERI-----KNKRYLVVINKVDVVEK--INEEEIKNKL-GTDRHMVKISALKGE 390 (482)
T ss_dssp HHHHCSEEEEEEETTSCCCHHHHH-HHHHH-----TTSSEEEEEEECSSCCC--CCHHHHHHHH-TCSTTEEEEEGGGTC
T ss_pred HhhcccEEEEEecCCCCCCHHHHH-HHHHh-----cCCCEEEEEECcccccc--cCHHHHHHHh-cCCCcEEEEECCCCC
Confidence 678899999999999887665432 33333 36899999999998653 3334443332 234679999999999
Q ss_pred CHHHHHHHHHHHcC
Q 028884 183 NINQLFEEIAKRLP 196 (202)
Q Consensus 183 ~i~~~~~~l~~~i~ 196 (202)
|+++++++|.+.+.
T Consensus 391 Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 391 GLEKLEESIYRETQ 404 (482)
T ss_dssp CHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998754
No 143
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=2.9e-22 Score=161.18 Aligned_cols=150 Identities=21% Similarity=0.245 Sum_probs=101.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccccceeEEEEEEEecCCcEEEEEEEeCCChhh---------hhhccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER---------YAALAPLY 103 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~---------~~~~~~~~ 103 (202)
.+|+++|.+|+|||||+|+|.+..... ...+..+.+.....+.+.+ ..+.+|||||.+. +...+..+
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG---KTFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT---EEEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC---eEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 479999999999999999999876432 2334444455455555543 4689999999653 34566778
Q ss_pred ccCccEEEEEEeCCChhHHHH--HHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH-HHHHHHcCC-eEEEeccC
Q 028884 104 YRGAAVAVVVYDITSPDSFNK--AQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG-IEYAEKNGM-FFIETSAK 179 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~~ 179 (202)
++.+|++|+|+|+.++.+... +..|+ +. .++|+++|+||+|+.+. . ..+. ..+. .+++ .++++||+
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~~i~~~l---~~---~~~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~ 148 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDESLADFL---RK---STVDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAE 148 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHHHHHHHH---HH---HTCCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTT
T ss_pred HHhCCEEEEEEECCCCCCHHHHHHHHHH---HH---cCCCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEecc
Confidence 999999999999987644332 23332 22 26889999999997432 0 1222 3333 4555 68999999
Q ss_pred CCCCHHHHHHHHHHHcC
Q 028884 180 TADNINQLFEEIAKRLP 196 (202)
Q Consensus 180 ~~~~i~~~~~~l~~~i~ 196 (202)
+|.|+.+++++|.+.+.
T Consensus 149 ~g~gv~~L~~~i~~~l~ 165 (439)
T 1mky_A 149 HNINLDTMLETIIKKLE 165 (439)
T ss_dssp TTBSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999999998875
No 144
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.88 E-value=1.9e-21 Score=156.27 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=104.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCC-------------------------------CCCccccceeEEEEEEEe
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIAL 77 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~ 77 (202)
+....++|+++|++++|||||+++|++.... .......+.+.....+..
T Consensus 13 ~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~ 92 (439)
T 3j2k_7 13 PKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET 92 (439)
T ss_pred CCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec
Confidence 3456899999999999999999999653210 111123344444444433
Q ss_pred cCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhH---H---HHHHHHHHHHHHcCCCCCe-EEEEEeCCC
Q 028884 78 QDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F---NKAQYWVKELQKHGSPDIV-MALVGNKAD 150 (202)
Q Consensus 78 ~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~D 150 (202)
.+ ..+.+|||||++.|...+...+..+|++|+|+|++++.. + .+..+.+..+.. .++| +++|+||+|
T Consensus 93 ~~---~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~iIvviNK~D 166 (439)
T 3j2k_7 93 EK---KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKHLIVLINKMD 166 (439)
T ss_pred CC---eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCeEEEEeecCC
Confidence 32 589999999999999888888999999999999998642 1 123333333333 3566 899999999
Q ss_pred CCCCC------CCChHHHHHHHHHcC------CeEEEeccCCCCCHHHHHH
Q 028884 151 LHEKR------EVPAQDGIEYAEKNG------MFFIETSAKTADNINQLFE 189 (202)
Q Consensus 151 ~~~~~------~~~~~~~~~~~~~~~------~~~~~~s~~~~~~i~~~~~ 189 (202)
+.... .....+...+....+ ++++++||++|.|+.++++
T Consensus 167 l~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 167 DPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 85421 111223334444433 5799999999999998544
No 145
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.87 E-value=6.4e-22 Score=155.99 Aligned_cols=115 Identities=18% Similarity=0.211 Sum_probs=93.1
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCC----------hhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITS----------PDSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~ 151 (202)
+.+++||++|++.++..|..++++++++|+|||+++ ..+|.....|+..+... ...++|++||+||+|+
T Consensus 217 v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL 296 (402)
T 1azs_C 217 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL 296 (402)
T ss_dssp EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHH
T ss_pred ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhh
Confidence 689999999999999999999999999999999999 78999999999888765 3468999999999997
Q ss_pred CCCCC---C---------------------------ChHHHHHHH-----HH--------cCCeEEEeccCCCCCHHHHH
Q 028884 152 HEKRE---V---------------------------PAQDGIEYA-----EK--------NGMFFIETSAKTADNINQLF 188 (202)
Q Consensus 152 ~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~s~~~~~~i~~~~ 188 (202)
.+... + ..+++..++ .. ..+.++++||+++.||+++|
T Consensus 297 ~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~~vF 376 (402)
T 1azs_C 297 LAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIRRVF 376 (402)
T ss_dssp HHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHHHHH
T ss_pred hhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHHHHH
Confidence 43211 1 124444443 22 24567899999999999999
Q ss_pred HHHHHHcCC
Q 028884 189 EEIAKRLPR 197 (202)
Q Consensus 189 ~~l~~~i~~ 197 (202)
+++.+.+.+
T Consensus 377 ~~v~~~I~~ 385 (402)
T 1azs_C 377 NDCRDIIQR 385 (402)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887753
No 146
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.87 E-value=8.7e-24 Score=172.33 Aligned_cols=160 Identities=15% Similarity=0.179 Sum_probs=114.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAV 111 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i 111 (202)
+..+|+++|++++|||||+++|.+..+.....++.+.+.....+.+.++. .+.||||||++.|..++..+++.+|++|
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~g~--~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPSGE--KITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSCSS--CCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCCCC--EEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 46789999999999999999999866544444444444433334333333 6899999999999999999999999999
Q ss_pred EEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC-ChHHHHHH---HHHc--CCeEEEeccCCCCCHH
Q 028884 112 VVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEY---AEKN--GMFFIETSAKTADNIN 185 (202)
Q Consensus 112 ~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~---~~~~--~~~~~~~s~~~~~~i~ 185 (202)
+|+|++++...+... ++..+. ..++|+++|+||+|+...... ...+...+ +..+ .++++++||++|.|++
T Consensus 81 LVVDa~dg~~~qt~e-~l~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~ 156 (537)
T 3izy_P 81 LVVAADDGVMKQTVE-SIQHAK---DAHVPIVLAINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMM 156 (537)
T ss_dssp EECBSSSCCCHHHHH-HHHHHH---TTTCCEEECCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSH
T ss_pred EEEECCCCccHHHHH-HHHHHH---HcCCcEEEEEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCch
Confidence 999999865443333 223333 347899999999998653221 11222111 1111 3479999999999999
Q ss_pred HHHHHHHHHcCC
Q 028884 186 QLFEEIAKRLPR 197 (202)
Q Consensus 186 ~~~~~l~~~i~~ 197 (202)
+++++|...+..
T Consensus 157 eLle~I~~l~~~ 168 (537)
T 3izy_P 157 ALAEATIALAEM 168 (537)
T ss_dssp HHHHHHHHHHTT
T ss_pred hHHHHHHHhhhc
Confidence 999999987653
No 147
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.87 E-value=1.1e-21 Score=153.88 Aligned_cols=163 Identities=16% Similarity=0.099 Sum_probs=109.9
Q ss_pred eee-EEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCCh---------hhhhhcccc
Q 028884 33 RVK-LVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQ---------ERYAALAPL 102 (202)
Q Consensus 33 ~~~-i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~---------~~~~~~~~~ 102 (202)
.++ |+++|.+|+|||||+|+|.+........+..+.+.....+.+.+ ..+.+|||+|. +.+...+.
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g---~~v~l~DT~G~i~~lp~~lve~f~~tl~- 253 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN---RKIMLVDTVGFIRGIPPQIVDAFFVTLS- 253 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETT---EEEEEEECCCBCSSCCGGGHHHHHHHHH-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECC---EEEEEEeCCCchhcCCHHHHHHHHHHHH-
Confidence 455 99999999999999999998765333333334344445555544 47899999996 23444433
Q ss_pred cccCccEEEEEEeCCChh--HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC-hHHHHHHHHHc---CCeEEEe
Q 028884 103 YYRGAAVAVVVYDITSPD--SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKN---GMFFIET 176 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~--s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~---~~~~~~~ 176 (202)
.+..+|++++|+|++++. ....+..|...+......+.|+++|+||+|+....... ...+..++... ..+++++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 333 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPI 333 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 467899999999999876 55666667666666555678999999999986532100 11222233444 3368999
Q ss_pred ccCCCCCHHHHHHHHHHHcCCCC
Q 028884 177 SAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 177 s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
|++++.|+++++++|.+.+..+.
T Consensus 334 SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 334 SALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHHC
T ss_pred ECCCCcCHHHHHHHHHHHhcccC
Confidence 99999999999999998776544
No 148
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.87 E-value=2e-22 Score=162.30 Aligned_cols=155 Identities=17% Similarity=0.177 Sum_probs=102.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------ccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL--------APL 102 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~--------~~~ 102 (202)
..++|+++|.+|+|||||+|+|.+...... ..++.+.+.....+.+.+ ..+.+|||||...+... ...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g---~~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG---IPVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT---EEEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC---EEEEEEECCccccchhHHHHHHHHHHhh
Confidence 468999999999999999999998654322 223333333333444433 57899999997655432 234
Q ss_pred cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCC
Q 028884 103 YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTAD 182 (202)
Q Consensus 103 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 182 (202)
+++.+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+........ ...+. ...+++++|+++|.
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l~-----~~piivV~NK~Dl~~~~~~~~--~~~~~--~~~~~i~iSAktg~ 369 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGD-QEIYEQVK-----HRPLILVMNKIDLVEKQLITS--LEYPE--NITQIVHTAAAQKQ 369 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHH-HHHHHHHT-----TSCEEEEEECTTSSCGGGSTT--CCCCT--TCCCEEEEBTTTTB
T ss_pred hhhcCCEEEEEeccCCCCCHHH-HHHHHhcc-----CCcEEEEEECCCCCcchhhHH--HHHhc--cCCcEEEEECCCCC
Confidence 6788999999999998765443 44544442 368999999999876543320 00111 35679999999999
Q ss_pred CHHHHHHHHHHHcCCCC
Q 028884 183 NINQLFEEIAKRLPRPS 199 (202)
Q Consensus 183 ~i~~~~~~l~~~i~~~~ 199 (202)
|+++++++|.+.+....
T Consensus 370 Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 370 GIDSLETAILEIVQTGK 386 (462)
T ss_dssp SHHHHHHHHHHHHTTSS
T ss_pred CHHHHHHHHHHHHhccC
Confidence 99999999999887654
No 149
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.87 E-value=5.8e-22 Score=148.05 Aligned_cols=165 Identities=13% Similarity=0.082 Sum_probs=104.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccc--cceeEEEEEEEecCCcEEEEEEEeCCCh--------hhhhhcc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT--VGASFLSQTIALQDSTTVKFEIWDTAGQ--------ERYAALA 100 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~D~~G~--------~~~~~~~ 100 (202)
...++|+|+|.+|+|||||+|+|++.......... .+...........+ ..+.+|||||. +.+....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK---CHVEVVDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT---EEEEEEECCSCSSTTHHHHSTTSHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC---cEEEEEECCCCCCCCCCcHHHHHHHH
Confidence 45899999999999999999999997765443322 22222222233222 68999999995 2222222
Q ss_pred ccc----ccCccEEEEEEeCCChhH-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC------ChHHHHHHHHHc
Q 028884 101 PLY----YRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV------PAQDGIEYAEKN 169 (202)
Q Consensus 101 ~~~----~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~------~~~~~~~~~~~~ 169 (202)
..+ .+.+|++|+|+|+++... ...+.+++..+......+.|++|++||.|+...... .......+...+
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~ 175 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAEC 175 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHT
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHc
Confidence 222 388999999999985321 122233333332222236899999999998653211 113456777778
Q ss_pred CCeEEEeccCC-----CCCHHHHHHHHHHHcCCC
Q 028884 170 GMFFIETSAKT-----ADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 170 ~~~~~~~s~~~-----~~~i~~~~~~l~~~i~~~ 198 (202)
+.+++.++... +.++.++++.|.+.+.+.
T Consensus 176 g~~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 176 GGRVCAFDNRATGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp TTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEeCCCCccccHHHHHHHHHHHHHHHHHc
Confidence 88877776554 579999999998887653
No 150
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.87 E-value=1.1e-21 Score=147.50 Aligned_cols=164 Identities=18% Similarity=0.141 Sum_probs=103.1
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCC-CCccc-cceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDP-TSKVT-VGASFLSQTIALQDSTTVKFEIWDTAGQERYAA-------- 98 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~-------- 98 (202)
+....++|+|+|.+|+|||||+++|++..... ...+. .+...........+ ..+.+|||||...+..
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~i~iiDTpG~~~~~~~~~~~~~~ 94 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN---REIVIIDTPDMFSWKDHCEALYKE 94 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT---EEEEEEECCGGGGSSCCCHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC---CEEEEEECcCCCCCCCCHHHHHHH
Confidence 34567999999999999999999999876332 22222 23333233333322 5799999999765422
Q ss_pred ---cccccccCccEEEEEEeCCChhHH-HHHHHHHHHHHHcCCCCCeEEEEEe-CCCCCCCCCCCh-------HHHHHHH
Q 028884 99 ---LAPLYYRGAAVAVVVYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGN-KADLHEKREVPA-------QDGIEYA 166 (202)
Q Consensus 99 ---~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~i~~~~~~~~p~ivv~n-K~D~~~~~~~~~-------~~~~~~~ 166 (202)
....+++.+|++|+|+|+++.... ..+..++..+... ....|.++|+| |+|+... .... .+...+.
T Consensus 95 i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 95 VQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGE-DAMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCG-GGGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCc-hhhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHH
Confidence 122367889999999999862211 2223333333221 11356666666 9998743 1111 2233455
Q ss_pred HHcCCeE-----EEeccCCCCCHHHHHHHHHHHcCC
Q 028884 167 EKNGMFF-----IETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 167 ~~~~~~~-----~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
..++..+ +++||+++.|+.++|++|.+.+..
T Consensus 173 ~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 173 AACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 5555432 688999999999999999988765
No 151
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.86 E-value=1.7e-21 Score=149.95 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=96.2
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------ChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~ 151 (202)
+.+++||++|++.++..|..++++++++|+|+|++ +..++.+...|+..+... ...++|+++++||+|+
T Consensus 167 v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL 246 (327)
T 3ohm_A 167 VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL 246 (327)
T ss_dssp EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence 78999999999999999999999999999999665 556777777777776554 2357999999999998
Q ss_pred CCCC----------------CCChHHHHHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHcCCCCC
Q 028884 152 HEKR----------------EVPAQDGIEYAE----------KNGMFFIETSAKTADNINQLFEEIAKRLPRPSP 200 (202)
Q Consensus 152 ~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~~ 200 (202)
.+++ ....+++..++. ..++.++++||+++.|++.+|+.+.+.|.+...
T Consensus 247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~~l 321 (327)
T 3ohm_A 247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLNL 321 (327)
T ss_dssp HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHHhH
Confidence 5422 356677777743 345668999999999999999999999876654
No 152
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.86 E-value=4e-21 Score=152.69 Aligned_cols=163 Identities=15% Similarity=0.149 Sum_probs=111.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC-------CCCC-------CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPT-------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYA 97 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~ 97 (202)
+.++|+++|++++|||||+++|.+.. +... .....+.........+.... ..+.+|||||++.|.
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~-~~~~iiDtpG~~~f~ 80 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA-RHYAHTDCPGHADYV 80 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS-CEEEEEECSSHHHHH
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC-eEEEEEECCChHHHH
Confidence 46899999999999999999998741 1000 00011111111122222222 579999999999998
Q ss_pred hcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCC---CChHHHHHHHHHcC---
Q 028884 98 ALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKRE---VPAQDGIEYAEKNG--- 170 (202)
Q Consensus 98 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~---~~~~~~~~~~~~~~--- 170 (202)
.....++..+|++|+|+|++++...+. .+++..+... ++| +++++||+|+..... ....+...+....+
T Consensus 81 ~~~~~~~~~aD~~ilVvda~~g~~~qt-~e~l~~~~~~---~vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~ 156 (397)
T 1d2e_A 81 KNMITGTAPLDGCILVVAANDGPMPQT-REHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKG 156 (397)
T ss_dssp HHHHHTSSCCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCT
T ss_pred HHHHhhHhhCCEEEEEEECCCCCCHHH-HHHHHHHHHc---CCCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCc
Confidence 888888999999999999998643333 3333444433 677 689999999864211 11234555666555
Q ss_pred --CeEEEeccCCCCC----------HHHHHHHHHHHcCCCC
Q 028884 171 --MFFIETSAKTADN----------INQLFEEIAKRLPRPS 199 (202)
Q Consensus 171 --~~~~~~s~~~~~~----------i~~~~~~l~~~i~~~~ 199 (202)
++++++||++|.| +.++++.|.+.+..+.
T Consensus 157 ~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 157 EETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp TTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred ccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 5899999999765 8999999999887653
No 153
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.86 E-value=1.8e-21 Score=158.30 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=98.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCC-------------------------------CCCccccceeEEEEEEEecC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIALQD 79 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~ 79 (202)
...++|+++|.+++|||||+++|++.... .......+.+.....+...
T Consensus 31 k~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~- 109 (483)
T 3p26_A 31 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH- 109 (483)
T ss_dssp CCEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECS-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecC-
Confidence 56899999999999999999999865110 0011122233223333322
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHH------HHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN------KAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~------~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
. +.+.+|||||++.|...+..++..+|++|+|+|++++.++. ...+.+..+.... ..|++||+||+|+.+
T Consensus 110 -~-~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~--~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 110 -R-ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--IHNLIIAMNKMDNVD 185 (483)
T ss_dssp -S-CEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTT--CCCEEEEEECGGGGT
T ss_pred -C-ceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcC--CCcEEEEEECcCccc
Confidence 2 68999999999999999999999999999999999875432 2233333333332 246999999999876
Q ss_pred CCCCChHHHH----HHHHHc-----CCeEEEeccCCCCCHHH
Q 028884 154 KREVPAQDGI----EYAEKN-----GMFFIETSAKTADNINQ 186 (202)
Q Consensus 154 ~~~~~~~~~~----~~~~~~-----~~~~~~~s~~~~~~i~~ 186 (202)
......++.. .+.... .++++++||++|.|+.+
T Consensus 186 ~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 186 WSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred chHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 4332222222 222222 46799999999999874
No 154
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.86 E-value=5.8e-22 Score=159.32 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=98.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCC-ccccceeEEEEEEEecCCcEEEEEEEeCCChh--------hhhhcccccc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTS-KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE--------RYAALAPLYY 104 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~--------~~~~~~~~~~ 104 (202)
.+|+++|.+|+|||||+|+|.+....... .+..+.+.....+.+.+ ..+.+|||||.+ .+...+..++
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~---~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 80 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN---YDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 80 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS---SCCEEEC---------CHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC---ceEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 68999999999999999999987654322 22222233232322222 479999999975 5677778889
Q ss_pred cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCC-eEEEeccCCCCC
Q 028884 105 RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGM-FFIETSAKTADN 183 (202)
Q Consensus 105 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ 183 (202)
+.+|++|+|+|+.++.+... .++..+.+ ..++|+++|+||+|+.+..... .++. .++. .++++||++|.|
T Consensus 81 ~~ad~il~vvD~~~~~~~~d--~~~~~~l~--~~~~pvilv~NK~D~~~~~~~~----~~~~-~lg~~~~~~iSA~~g~g 151 (436)
T 2hjg_A 81 DEADVIIFMVNGREGVTAAD--EEVAKILY--RTKKPVVLAVNKLDNTEMRANI----YDFY-SLGFGEPYPISGTHGLG 151 (436)
T ss_dssp HHCSEEEEEEETTTCSCHHH--HHHHHHHT--TCCSCEEEEEECCCC-----CC----CSSG-GGSSCCCEECBTTTTBT
T ss_pred HhCCEEEEEEeCCCCCCHHH--HHHHHHHH--HcCCCEEEEEECccCccchhhH----HHHH-HcCCCCeEEEeCcCCCC
Confidence 99999999999998755443 23333222 3478999999999986542211 1122 3344 689999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028884 184 INQLFEEIAKRLPR 197 (202)
Q Consensus 184 i~~~~~~l~~~i~~ 197 (202)
+.++++++.+.+.+
T Consensus 152 v~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 152 LGDLLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHHHHTGGG
T ss_pred hHHHHHHHHHhcCc
Confidence 99999999998864
No 155
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.85 E-value=2.6e-21 Score=154.20 Aligned_cols=163 Identities=13% Similarity=0.130 Sum_probs=114.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhC--------CCCCC---------CccccceeEEEEEEEecCCcEEEEEEEeCCC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG--------QFDPT---------SKVTVGASFLSQTIALQDSTTVKFEIWDTAG 92 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G 92 (202)
....++|+++|++++|||||+++|.+. .+... .....+.......+. ... ..+.+|||||
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~--~~~-~~~~iiDtpG 84 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYE--TAK-RHYSHVDCPG 84 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEE--CSS-CEEEEEECCC
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEec--cCC-eEEEEEECCC
Confidence 346799999999999999999999873 11110 011222222222222 222 5799999999
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCC---ChHHHHHHHHH
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEK 168 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~ 168 (202)
++.|......++..+|++|+|+|++++.. .+..+|+..+... ++| +++++||+|+...... ...+...+...
T Consensus 85 ~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~~---~ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~ 160 (405)
T 2c78_A 85 HADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQV---GVPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQ 160 (405)
T ss_dssp SGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHHT---TCCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHHc---CCCEEEEEEECccccCcHHHHHHHHHHHHHHHHH
Confidence 99998888888999999999999998753 3445566655543 577 8899999998742111 12234455555
Q ss_pred cC-----CeEEEeccCCCCC------------------HHHHHHHHHHHcCCCC
Q 028884 169 NG-----MFFIETSAKTADN------------------INQLFEEIAKRLPRPS 199 (202)
Q Consensus 169 ~~-----~~~~~~s~~~~~~------------------i~~~~~~l~~~i~~~~ 199 (202)
.+ .+++++||++|.| +.++++.|.+.+..+.
T Consensus 161 ~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~ 214 (405)
T 2c78_A 161 YEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214 (405)
T ss_dssp TTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred hcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence 54 6799999999987 8899999998887553
No 156
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.85 E-value=7.9e-22 Score=149.51 Aligned_cols=161 Identities=18% Similarity=0.222 Sum_probs=90.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC--------ccccceeEEEEEEEecCCcEEEEEEEeCCChh-------h
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS--------KVTVGASFLSQTIALQDSTTVKFEIWDTAGQE-------R 95 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~-------~ 95 (202)
...++|+|+|.+|+|||||+|+|++....... .++.+.......+.. ++..+.+.+|||||.. .
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~l~liDTpG~~d~~~~~~~ 84 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKE-GGVQLLLTIVDTPGFGDAVDNSNC 84 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC---CCEEEEEEECCCCSCCSCCTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEec-CCeEEEEEEEECCCccccccchhh
Confidence 45799999999999999999998876543332 233333333333322 3344789999999962 1
Q ss_pred hhhcc-------ccc-------------ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 96 YAALA-------PLY-------------YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 96 ~~~~~-------~~~-------------~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
+..+. ..+ -..+|+++++++.+...-......++..+.. ++|+++|+||+|+....
T Consensus 85 ~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 85 WQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp THHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHH
Confidence 11111 111 1237789998877652111222334444432 78999999999986432
Q ss_pred CCC--hHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 156 EVP--AQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 156 ~~~--~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+.. ...........+++++++|++++.++.+++++|.+.+.
T Consensus 161 e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 221 12344455567889999999999999999999988764
No 157
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.85 E-value=6.2e-21 Score=155.98 Aligned_cols=116 Identities=13% Similarity=0.123 Sum_probs=82.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCC---------------CCC-------ccccceeEEEEEEEecCCcEEEEEEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFD---------------PTS-------KVTVGASFLSQTIALQDSTTVKFEIW 88 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~---------------~~~-------~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (202)
.+..+|+|+|++++|||||+++|+..... ... ....+.......+.+.+ +.+.+|
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~---~~i~li 87 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD---YLINLL 87 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT---EEEEEE
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC---EEEEEE
Confidence 35689999999999999999999721100 000 01122222223333332 689999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 89 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
||||+..|...+..+++.+|++|+|+|++++.+......| ..+. ..++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~-~~~~---~~~iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 88 DTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLM-EVCR---LRHTPIMTFINKMDRDT 148 (528)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH-HHHH---TTTCCEEEEEECTTSCC
T ss_pred ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHH-HHHH---HcCCCEEEEEeCCCCcc
Confidence 9999999999899999999999999999987665555444 3333 33789999999999864
No 158
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.85 E-value=1.1e-20 Score=151.80 Aligned_cols=153 Identities=20% Similarity=0.185 Sum_probs=104.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC------------c---------------------cccceeEEEEEE
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------K---------------------VTVGASFLSQTI 75 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~---------------------~~~~~~~~~~~~ 75 (202)
.....++|+++|++++|||||+++|++....... . ...+.+.....+
T Consensus 20 ~~~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~ 99 (434)
T 1zun_B 20 ERKEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYF 99 (434)
T ss_dssp TSCEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEE
T ss_pred ccCCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEe
Confidence 3456799999999999999999999875311000 0 011111112222
Q ss_pred EecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC
Q 028884 76 ALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR 155 (202)
Q Consensus 76 ~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~ 155 (202)
.. . ...+.+|||||++.|...+..++..+|++|+|+|++++.. .+..+++..+.... -.|+++|+||+|+.+..
T Consensus 100 ~~--~-~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~-~qt~~~l~~~~~~~--~~~iIvviNK~Dl~~~~ 173 (434)
T 1zun_B 100 ST--A-KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQ-TQTRRHSYIASLLG--IKHIVVAINKMDLNGFD 173 (434)
T ss_dssp EC--S-SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSC-HHHHHHHHHHHHTT--CCEEEEEEECTTTTTSC
T ss_pred ec--C-CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHHcC--CCeEEEEEEcCcCCccc
Confidence 21 2 2689999999999998888888999999999999998642 33444555454432 23699999999987532
Q ss_pred CC----ChHHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 028884 156 EV----PAQDGIEYAEKNG-----MFFIETSAKTADNINQL 187 (202)
Q Consensus 156 ~~----~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~ 187 (202)
.. ...+...++...+ .+++++||++|.|+.++
T Consensus 174 ~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 174 ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 11 1234455566666 67999999999999873
No 159
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.5e-21 Score=140.26 Aligned_cols=117 Identities=15% Similarity=0.240 Sum_probs=87.2
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCC---CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT---SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRG 106 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~ 106 (202)
..+.++|+|+|.+|+|||||+++|.+..+... ..++.+.. + ....+.+||+||.+.+...+..++..
T Consensus 45 ~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~-------~---~~~~~~l~Dt~G~~~~~~~~~~~~~~ 114 (193)
T 2ged_A 45 GSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD-------Y---DGSGVTLVDFPGHVKLRYKLSDYLKT 114 (193)
T ss_dssp -CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C-------C---CCTTCSEEEETTCCBSSCCHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee-------e---cCCeEEEEECCCCchHHHHHHHHHHh
Confidence 35679999999999999999999999775431 11111111 1 22578999999998887777666665
Q ss_pred ----ccEEEEEEeCC-ChhHHHHHHHHHHHHHHc----CCCCCeEEEEEeCCCCCCCCC
Q 028884 107 ----AAVAVVVYDIT-SPDSFNKAQYWVKELQKH----GSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 107 ----~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~----~~~~~p~ivv~nK~D~~~~~~ 156 (202)
+|++|+|||++ ++.++..+..|+..+... ...+.|+++|+||+|+.+...
T Consensus 115 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 115 RAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp HGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred hcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 888998888888776543 346899999999999876543
No 160
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.84 E-value=2.8e-21 Score=155.27 Aligned_cols=151 Identities=19% Similarity=0.229 Sum_probs=100.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCCCCC-----------------------------ccccceeEEEEEEEecC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPTS-----------------------------KVTVGASFLSQTIALQD 79 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~~-----------------------------~~~~~~~~~~~~~~~~~ 79 (202)
.+.++|+++|++++|||||+++|+.. .+.... ....+.+.....+..
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-- 81 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-- 81 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC--
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec--
Confidence 45799999999999999999999874 221100 111222222222322
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHH-------HHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKA-------QYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-------~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
.. ..+.+|||||++.|...+..++..+|++|+|+|+++ .+|+.. .+.+..+.... -.|+++++||+|+.
T Consensus 82 ~~-~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~ 157 (435)
T 1jny_A 82 KK-YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMG--LDQLIVAVNKMDLT 157 (435)
T ss_dssp SS-CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTT--CTTCEEEEECGGGS
T ss_pred CC-eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcC--CCeEEEEEEcccCC
Confidence 22 579999999999999888889999999999999998 556643 33333233221 23589999999987
Q ss_pred CCC------CCChHHHHHHHHHcC-----CeEEEeccCCCCCHHHH
Q 028884 153 EKR------EVPAQDGIEYAEKNG-----MFFIETSAKTADNINQL 187 (202)
Q Consensus 153 ~~~------~~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~~~ 187 (202)
+.. ....++...++...+ ++++++||++|.|+.++
T Consensus 158 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~ 203 (435)
T 1jny_A 158 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHK 203 (435)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBC
T ss_pred CccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccc
Confidence 531 112344555666655 67999999999999743
No 161
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.84 E-value=2.7e-20 Score=149.72 Aligned_cols=159 Identities=20% Similarity=0.180 Sum_probs=102.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCC-CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcc---------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPT-SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALA--------- 100 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~--------- 100 (202)
...++|+++|++|+|||||+|+|.+...... ..+..+.+.....+.+.+ ..+.+|||+|........
T Consensus 178 ~~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g---~~~~l~Dt~G~~~~~~~~~~~~e~~~~ 254 (439)
T 1mky_A 178 TDAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG---RKYVFVDTAGLRRKSRVEPRTVEKYSN 254 (439)
T ss_dssp CSCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT---EEEEESSCSCC-----------CCSCC
T ss_pred ccCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC---EEEEEEECCCCccccccchhhHHHHHH
Confidence 3469999999999999999999998754211 122222223233344433 368999999975432211
Q ss_pred ---cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHH-HHH----HcCCe
Q 028884 101 ---PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE-YAE----KNGMF 172 (202)
Q Consensus 101 ---~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~-~~~----~~~~~ 172 (202)
..+++.+|++++++|++++.+.... .+...+.. .+.|+++|+||+|+.+.......+... +.. ....+
T Consensus 255 ~~~~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (439)
T 1mky_A 255 YRVVDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP 330 (439)
T ss_dssp HHHHHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCc
Confidence 2345678999999999986554432 23333332 378999999999987654433333322 222 23578
Q ss_pred EEEeccCCCCCHHHHHHHHHHHcC
Q 028884 173 FIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 173 ~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
++++||++|.|++++|+.+.+.+.
T Consensus 331 ~~~~SA~~g~gv~~l~~~i~~~~~ 354 (439)
T 1mky_A 331 LIFTSADKGWNIDRMIDAMNLAYA 354 (439)
T ss_dssp EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999987653
No 162
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.84 E-value=3.2e-20 Score=153.48 Aligned_cols=158 Identities=18% Similarity=0.185 Sum_probs=104.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc----cccceeEEEEEE------EecC-----CcEEEEEEEeCCChhhh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK----VTVGASFLSQTI------ALQD-----STTVKFEIWDTAGQERY 96 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----~~~~~~~~~~~~------~~~~-----~~~~~~~i~D~~G~~~~ 96 (202)
+.++|+|+|++++|||||+++|.+..+..... .+.+........ .... .....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 46899999999999999999999764422211 111211111100 0000 01125999999999999
Q ss_pred hhcccccccCccEEEEEEeCCC---hhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC------------hH-
Q 028884 97 AALAPLYYRGAAVAVVVYDITS---PDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP------------AQ- 160 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~------------~~- 160 (202)
..++..+++.+|++|+|+|+++ +.+++.+. .+.. .++|+++++||+|+....... ..
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~----~l~~---~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEALN----ILRM---YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHH----HHHH---TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHHH----HHHH---cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999998 44444332 2332 378999999999986432110 00
Q ss_pred ----------HHHHHHHHc---------------CCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 161 ----------DGIEYAEKN---------------GMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 161 ----------~~~~~~~~~---------------~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+........ ..+++++||++|.|+++++++|...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 111111121 237999999999999999999987653
No 163
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=7.5e-21 Score=158.00 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=101.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC-------------------------------ccccceeEEEEEEEec
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS-------------------------------KVTVGASFLSQTIALQ 78 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~ 78 (202)
....++|+++|++++|||||+++|++....... ...++.+.....+...
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~ 243 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH 243 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence 356899999999999999999999975322111 0122333333333332
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhH---H---HHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDS---F---NKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 79 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
+ +.+.||||||++.|...+..++..+|++|+|+|++++.. + .+....+..+... ...|++||+||+|+.
T Consensus 244 ~---~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l--gi~~iIVVvNKiDl~ 318 (611)
T 3izq_1 244 R---ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNV 318 (611)
T ss_dssp S---CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT--TCCEEEEEEECTTTT
T ss_pred C---ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc--CCCeEEEEEeccccc
Confidence 2 589999999999999988999999999999999998531 1 1222222223322 124599999999987
Q ss_pred CCCCCCh----HHHHHHHHHc-----CCeEEEeccCCCCCHHHH
Q 028884 153 EKREVPA----QDGIEYAEKN-----GMFFIETSAKTADNINQL 187 (202)
Q Consensus 153 ~~~~~~~----~~~~~~~~~~-----~~~~~~~s~~~~~~i~~~ 187 (202)
....... .+...+.... .++++++||++|.|+.++
T Consensus 319 ~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 319 DWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred chhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 6322222 2233333333 358999999999999864
No 164
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.84 E-value=2.4e-21 Score=156.79 Aligned_cols=155 Identities=15% Similarity=0.152 Sum_probs=89.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCCC-----------------------------CCccccceeEEEEEEEecC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDP-----------------------------TSKVTVGASFLSQTIALQD 79 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~-----------------------------~~~~~~~~~~~~~~~~~~~ 79 (202)
.+.++|+++|+.++|||||+++|+.. .+.. ......+.......+.+.
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~- 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETE- 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECS-
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecC-
Confidence 56799999999999999999999752 1110 001112222222223322
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh---HHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCC
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKR 155 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~ 155 (202)
. ..+.+|||||++.|...+...+..+|++|+|+|++++. +|....++.+.+......++| ++|++||+|+....
T Consensus 120 -~-~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~ 197 (467)
T 1r5b_A 120 -H-RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQ 197 (467)
T ss_dssp -S-EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCS
T ss_pred -C-eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcc
Confidence 2 68999999999999988888899999999999999863 232222222222222223676 99999999985421
Q ss_pred ------CCChHHHHHHHHHc-------CCeEEEeccCCCCCHHHHH
Q 028884 156 ------EVPAQDGIEYAEKN-------GMFFIETSAKTADNINQLF 188 (202)
Q Consensus 156 ------~~~~~~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~ 188 (202)
.....+...++... .++++++|+++|.|+.+++
T Consensus 198 ~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 198 WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 11122345555554 4569999999999987644
No 165
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=1.3e-20 Score=146.90 Aligned_cols=117 Identities=17% Similarity=0.231 Sum_probs=91.4
Q ss_pred cEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------ChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCC
Q 028884 81 TTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKH-GSPDIVMALVGNKA 149 (202)
Q Consensus 81 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~ 149 (202)
..+.+++||++|++.++.+|..++++++++|+|||++ +..++.....|+..+... ...++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 3488999999999999999999999999999999998 678899888888887654 23679999999999
Q ss_pred CCCCCCC--C-------------------ChHHHHHHHHH----------------cCCeEEEeccCCCCCHHHHHHHHH
Q 028884 150 DLHEKRE--V-------------------PAQDGIEYAEK----------------NGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 150 D~~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
|+.++.. + ..+++..++.. ..+.++++||+++.|++++|+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~ 340 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD 340 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence 9743211 1 13455555432 123468999999999999999999
Q ss_pred HHcCC
Q 028884 193 KRLPR 197 (202)
Q Consensus 193 ~~i~~ 197 (202)
+.+.+
T Consensus 341 ~~I~~ 345 (354)
T 2xtz_A 341 ETLRR 345 (354)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87754
No 166
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.83 E-value=4.2e-22 Score=161.21 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=106.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVA 110 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 110 (202)
++..+|+++|++++|||||+++|.+..+........+.+.....+.+.+ ..+.+|||||++.|..++...+..+|++
T Consensus 2 ~R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~---~~i~~iDTPGhe~f~~~~~~~~~~aD~a 78 (501)
T 1zo1_I 2 PRAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN---GMITFLDTPGHAAFTSMRARGAQATDIV 78 (501)
T ss_dssp CCCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS---SCCCEECCCTTTCCTTSBCSSSBSCSSE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC---EEEEEEECCCcHHHHHHHHHHHhhCCEE
Confidence 3568999999999999999999988654433333333322222222222 3689999999999999999999999999
Q ss_pred EEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCC--CCChH--HHHHHHHHc--CCeEEEeccCCCCCH
Q 028884 111 VVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKR--EVPAQ--DGIEYAEKN--GMFFIETSAKTADNI 184 (202)
Q Consensus 111 i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~--~~~~~--~~~~~~~~~--~~~~~~~s~~~~~~i 184 (202)
|+|+|++++...+. .+++..+.. .++|+++++||+|+.... .+... +...+...+ .++++++||++|.|+
T Consensus 79 ILVVda~~g~~~qT-~e~l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI 154 (501)
T 1zo1_I 79 VLVVAADDGVMPQT-IEAIQHAKA---AQVPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGI 154 (501)
T ss_dssp EEEEETTTBSCTTT-HHHHHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTC
T ss_pred EEEeecccCccHHH-HHHHHHHHh---cCceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCc
Confidence 99999988532221 222233332 368899999999986421 11100 000011122 368999999999999
Q ss_pred HHHHHHHHHH
Q 028884 185 NQLFEEIAKR 194 (202)
Q Consensus 185 ~~~~~~l~~~ 194 (202)
+++|++|...
T Consensus 155 ~eLle~I~~~ 164 (501)
T 1zo1_I 155 DELLDAILLQ 164 (501)
T ss_dssp TTHHHHTTTT
T ss_pred chhhhhhhhh
Confidence 9999999764
No 167
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.83 E-value=4.5e-21 Score=155.01 Aligned_cols=156 Identities=17% Similarity=0.131 Sum_probs=100.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCC--------hhhhhhccccc
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAG--------QERYAALAPLY 103 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G--------~~~~~~~~~~~ 103 (202)
...+|+|+|.+|||||||+|+|.+..+..... ..+.............. ..+.+||||| .+.+...+..+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~-~~g~t~~~~~~~~~~~~-~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 99 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIVED-TPGVTRDRIYSSAEWLN-YDFNLIDTGGIDIGDEPFLAQIRQQAEIA 99 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCS-SCCEEECCCC------CCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCcccCC-CCCcceeEEEEEEEECC-ceEEEEECCCCCCcchHHHHHHHHHHHhh
Confidence 35799999999999999999999876543322 22222222222222222 5799999999 77788888889
Q ss_pred ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCC
Q 028884 104 YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADN 183 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ 183 (202)
++.+|++|+|+|..++.+ ....|+..+.+ ..++|+++|+||+|+.+... ...++.......++++||++|.|
T Consensus 100 ~~~ad~il~VvD~~~~~~--~~d~~l~~~l~--~~~~pvilV~NK~D~~~~~~----~~~e~~~lg~~~~~~iSA~~g~g 171 (456)
T 4dcu_A 100 MDEADVIIFMVNGREGVT--AADEEVAKILY--RTKKPVVLAVNKLDNTEMRA----NIYDFYSLGFGEPYPISGTHGLG 171 (456)
T ss_dssp HHHCSEEEEEEESSSCSC--HHHHHHHHHHT--TCCSCEEEEEECC-------------CCSGGGSSSSEEECCTTTCTT
T ss_pred HhhCCEEEEEEeCCCCCC--hHHHHHHHHHH--HcCCCEEEEEECccchhhhh----hHHHHHHcCCCceEEeecccccc
Confidence 999999999999887532 22233333222 35789999999999764321 11111111122468999999999
Q ss_pred HHHHHHHHHHHcCC
Q 028884 184 INQLFEEIAKRLPR 197 (202)
Q Consensus 184 i~~~~~~l~~~i~~ 197 (202)
+.++++.+.+.+..
T Consensus 172 v~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 172 LGDLLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHHHHTTGGG
T ss_pred hHHHHHHHHhhccc
Confidence 99999999988753
No 168
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.83 E-value=5.8e-21 Score=150.07 Aligned_cols=145 Identities=8% Similarity=0.019 Sum_probs=103.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEE
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVY 114 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 114 (202)
+|+++|++++|||||+++|+ ....+.+.....+...+ ..+.+|||||+++|.......++.+|++|+|+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------~~giTi~~~~~~~~~~~---~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVv 91 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------KKGTSSDITMYNNDKEG---RNMVFVDAHSYPKTLKSLITALNISDIAVLCI 91 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------EEEEESSSEEEEECSSS---SEEEEEECTTTTTCHHHHHHHHHTCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH--------hCCEEEEeeEEEEecCC---eEEEEEECCChHHHHHHHHHHHHHCCEEEEEE
Confidence 99999999999999999998 22222222233333222 47999999999998777777789999999999
Q ss_pred eCCChhHHHHHHHHHHHHHHcCCCCCeE-EEEEe-CCCCCCCCCCCh--HHHHHHHHHc---CCeEEE--eccCC---CC
Q 028884 115 DITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGN-KADLHEKREVPA--QDGIEYAEKN---GMFFIE--TSAKT---AD 182 (202)
Q Consensus 115 d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~n-K~D~~~~~~~~~--~~~~~~~~~~---~~~~~~--~s~~~---~~ 182 (202)
| +.. .+.+..+++..+... ++|. ++++| |+|+ +...... ++...+.... .+++++ +||++ +.
T Consensus 92 d-~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~ 165 (370)
T 2elf_A 92 P-PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFE 165 (370)
T ss_dssp C-TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTT
T ss_pred c-CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCC
Confidence 9 543 345556666666554 4666 88899 9998 4221111 2333444333 368999 99999 99
Q ss_pred CHHHHHHHHHHHcC
Q 028884 183 NINQLFEEIAKRLP 196 (202)
Q Consensus 183 ~i~~~~~~l~~~i~ 196 (202)
|++++++.|.+.+.
T Consensus 166 gi~~L~~~l~~~~~ 179 (370)
T 2elf_A 166 GVDELKARINEVAE 179 (370)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhcc
Confidence 99999999988754
No 169
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.83 E-value=1.6e-20 Score=145.03 Aligned_cols=115 Identities=18% Similarity=0.252 Sum_probs=92.3
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCC----------ChhHHHHHHHHHHHHHHc-CCCCCeEEEEEeCCCC
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDIT----------SPDSFNKAQYWVKELQKH-GSPDIVMALVGNKADL 151 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~i~~~-~~~~~p~ivv~nK~D~ 151 (202)
+.+++||++|++.++.+|..++++++++|+|+|++ +..++.+...|+..+... ...++|++|++||+|+
T Consensus 161 v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL 240 (340)
T 4fid_A 161 IPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDL 240 (340)
T ss_dssp CEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHH
T ss_pred eeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchh
Confidence 68999999999999999999999999999999998 667788888888777654 3367999999999997
Q ss_pred CCCC---------------CCChHHHHHHHHHc---------------------------CCeEEEeccCCCCCHHHHHH
Q 028884 152 HEKR---------------EVPAQDGIEYAEKN---------------------------GMFFIETSAKTADNINQLFE 189 (202)
Q Consensus 152 ~~~~---------------~~~~~~~~~~~~~~---------------------------~~~~~~~s~~~~~~i~~~~~ 189 (202)
.++. ....+++..++... .+.++++||+++.|++.+|+
T Consensus 241 ~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~vF~ 320 (340)
T 4fid_A 241 FEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKRVFM 320 (340)
T ss_dssp HHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHHHHH
T ss_pred hhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHHHHH
Confidence 4311 12345555544332 35688999999999999999
Q ss_pred HHHHHcCC
Q 028884 190 EIAKRLPR 197 (202)
Q Consensus 190 ~l~~~i~~ 197 (202)
.+.+.|.+
T Consensus 321 ~v~~~Il~ 328 (340)
T 4fid_A 321 LAVDVIMK 328 (340)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 170
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.82 E-value=5.8e-20 Score=159.01 Aligned_cols=165 Identities=15% Similarity=0.134 Sum_probs=112.0
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCC-------CCCC-------CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQ-------FDPT-------SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~-------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
...+.++|+++|++++|||||+++|.+.. +... ...+.+..+....+.+.... ..+.+|||||++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~-~kI~IIDTPGHe 370 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPT-RHYAHVDCPGHA 370 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSS-CEEEEEECCCHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCC-EEEEEEECCChH
Confidence 34568999999999999999999998731 0000 00111111111112222222 689999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCCCC---ChHHHHHHHHHcC
Q 028884 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKREV---PAQDGIEYAEKNG 170 (202)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~~~---~~~~~~~~~~~~~ 170 (202)
.|.......+..+|++|+|+|++++.. .+..+++..+... ++| ++||+||+|+...... ..++...+....+
T Consensus 371 dF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l---gIP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G 446 (1289)
T 3avx_A 371 DYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV---GVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYD 446 (1289)
T ss_dssp HHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH---TCSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc---CCCeEEEEEeecccccchhhHHHHHHHHHHHHHhcc
Confidence 998888888999999999999998643 2334455555443 577 7899999998753211 1234455565554
Q ss_pred -----CeEEEeccCCC--------CCHHHHHHHHHHHcCCC
Q 028884 171 -----MFFIETSAKTA--------DNINQLFEEIAKRLPRP 198 (202)
Q Consensus 171 -----~~~~~~s~~~~--------~~i~~~~~~l~~~i~~~ 198 (202)
++++++||++| .|+.++++.|.+.+..+
T Consensus 447 ~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P 487 (1289)
T 3avx_A 447 FPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEP 487 (1289)
T ss_dssp SCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCC
T ss_pred ccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCC
Confidence 67999999999 46999999999888754
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.82 E-value=8.3e-21 Score=145.43 Aligned_cols=161 Identities=16% Similarity=0.148 Sum_probs=101.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc------cccc--------------------eeE--------------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK------VTVG--------------------ASF-------------- 70 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~------~~~~--------------------~~~-------------- 70 (202)
...++|+|+|.+|+|||||+|+|++..+.+... ++.. ...
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i 103 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 103 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999987642211 1100 000
Q ss_pred ---------EEEEEEecCCcEEEEEEEeCCChh-------------hhhhcccccccCccEEE-EEEeCCChhHHHHHHH
Q 028884 71 ---------LSQTIALQDSTTVKFEIWDTAGQE-------------RYAALAPLYYRGAAVAV-VVYDITSPDSFNKAQY 127 (202)
Q Consensus 71 ---------~~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~ 127 (202)
....+.+.......+.+|||||.. .+..++..+++.++.+| +|+|+++..+......
T Consensus 104 ~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~ 183 (299)
T 2aka_B 104 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALK 183 (299)
T ss_dssp CSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHH
T ss_pred cccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHH
Confidence 000000000011479999999953 45566777888888666 7999987644333333
Q ss_pred HHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHc--C-CeEEEeccCCCCCHHHHHHHHHHH
Q 028884 128 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKN--G-MFFIETSAKTADNINQLFEEIAKR 194 (202)
Q Consensus 128 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~--~-~~~~~~s~~~~~~i~~~~~~l~~~ 194 (202)
++..+. ..+.|+++|+||+|+.+................ + .+++++||+++.|+++++++|.+.
T Consensus 184 ~~~~~~---~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~ 250 (299)
T 2aka_B 184 IAKEVD---PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 250 (299)
T ss_dssp HHHHHC---TTCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHH
T ss_pred HHHHhC---CCCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHH
Confidence 444443 347899999999998765432222211100011 2 357889999999999999998763
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.81 E-value=2.7e-19 Score=144.45 Aligned_cols=149 Identities=13% Similarity=0.146 Sum_probs=99.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCCCC-----------------------------CccccceeEEEEEEEecC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPT-----------------------------SKVTVGASFLSQTIALQD 79 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~-----------------------------~~~~~~~~~~~~~~~~~~ 79 (202)
.+.++|+++|++++|||||+++|++. .+... .....+.+.....+..
T Consensus 5 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-- 82 (458)
T 1f60_A 5 KSHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-- 82 (458)
T ss_dssp CEEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC--
T ss_pred CceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec--
Confidence 35799999999999999999999864 11110 0011222222222222
Q ss_pred CcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh---HHH---HHHHHHHHHHHcCCCCCe-EEEEEeCCCCC
Q 028884 80 STTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SFN---KAQYWVKELQKHGSPDIV-MALVGNKADLH 152 (202)
Q Consensus 80 ~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~---~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~ 152 (202)
.. ..+.+|||||++.|......++..+|++|+|+|++++. +|+ +..+++..+... ++| +++|+||+|+.
T Consensus 83 ~~-~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PK-YQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---GVRQLIVAVNKMDSV 158 (458)
T ss_dssp SS-EEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---TCCEEEEEEECGGGG
T ss_pred CC-ceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---CCCeEEEEEEccccc
Confidence 22 68999999999999988888899999999999999863 221 233333333332 455 89999999987
Q ss_pred CCCC----CChHHHHHHHHHcC-----CeEEEeccCCCCCHH
Q 028884 153 EKRE----VPAQDGIEYAEKNG-----MFFIETSAKTADNIN 185 (202)
Q Consensus 153 ~~~~----~~~~~~~~~~~~~~-----~~~~~~s~~~~~~i~ 185 (202)
+... ....+...++...+ ++++++||++|.|+.
T Consensus 159 ~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~ 200 (458)
T 1f60_A 159 KWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMI 200 (458)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTT
T ss_pred cCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcc
Confidence 3211 11233444555554 679999999999986
No 173
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.80 E-value=4.7e-21 Score=150.31 Aligned_cols=160 Identities=15% Similarity=0.262 Sum_probs=82.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-c------ccceeEEEEEEEec-CCcEEEEEEEeCCCh-------hh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-V------TVGASFLSQTIALQ-DSTTVKFEIWDTAGQ-------ER 95 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~------~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~-------~~ 95 (202)
...++|+|+|++|+|||||+++|++........ + ..+.......+.+. ++..+.+.+|||||. +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 557999999999999999999987754322111 0 01121222222222 233468999999998 55
Q ss_pred hhhccc-------ccccCc-------------cEEEEEEeCCChhHHHHHH-HHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 96 YAALAP-------LYYRGA-------------AVAVVVYDITSPDSFNKAQ-YWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 96 ~~~~~~-------~~~~~~-------------d~~i~v~d~~~~~s~~~~~-~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
+..++. .+++.+ |+++|+++.. ..++..+. .|+..+ ..++|+|+|+||+|+...
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTL 189 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSS-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecC-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCH
Confidence 554443 333322 3455555532 22343332 343333 357899999999998764
Q ss_pred CCCCh--HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 155 REVPA--QDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 155 ~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
..+.. .++..++..++++++++|++++.+ ++.|..+.+.+.
T Consensus 190 ~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~ 232 (361)
T 2qag_A 190 KERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLK 232 (361)
T ss_dssp HHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHH
Confidence 43332 355566666788999999999988 666666665543
No 174
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.80 E-value=3.6e-21 Score=159.45 Aligned_cols=161 Identities=22% Similarity=0.228 Sum_probs=91.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC-------------------------------CCCccccceeEEEEEEEec
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-------------------------------PTSKVTVGASFLSQTIALQ 78 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~ 78 (202)
....++|+++|++++|||||+++|++.... ......++.+.....+...
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~ 253 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD 253 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence 456789999999999999999999752100 0001122222222222222
Q ss_pred CCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh---HH---HHHHHHHHHHHHcCCCCCe-EEEEEeCCCC
Q 028884 79 DSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD---SF---NKAQYWVKELQKHGSPDIV-MALVGNKADL 151 (202)
Q Consensus 79 ~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~---~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~ 151 (202)
...+.||||||++.|.......+..+|++|+|+|++++. .+ .+....+..+... ++| +|||+||+|+
T Consensus 254 ---~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l---gip~iIvviNKiDl 327 (592)
T 3mca_A 254 ---KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL---GISEIVVSVNKLDL 327 (592)
T ss_dssp --------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS---SCCCEEEEEECGGG
T ss_pred ---CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc---CCCeEEEEEecccc
Confidence 267999999999999888888899999999999998642 11 1222233333333 455 8999999998
Q ss_pred CCCCCCC----hHHHHHHH-HHcCC-----eEEEeccCCCCCHH--------------HHHHHHHHHcC
Q 028884 152 HEKREVP----AQDGIEYA-EKNGM-----FFIETSAKTADNIN--------------QLFEEIAKRLP 196 (202)
Q Consensus 152 ~~~~~~~----~~~~~~~~-~~~~~-----~~~~~s~~~~~~i~--------------~~~~~l~~~i~ 196 (202)
....... ..+...+. ...++ +++++||++|.|+. .+++.|...+.
T Consensus 328 ~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p 396 (592)
T 3mca_A 328 MSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP 396 (592)
T ss_dssp GTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred ccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence 6522111 12233333 33343 69999999999998 78888877654
No 175
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.79 E-value=9.4e-19 Score=146.98 Aligned_cols=116 Identities=11% Similarity=0.058 Sum_probs=81.5
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC------------------ccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS------------------KVTVGASFLSQTIALQDSTTVKFEIWDTA 91 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 91 (202)
..+..+|+|+|+.|+|||||+++|.+....... ....+.......+.. .. +.+.+||||
T Consensus 6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~--~~-~~~nliDTp 82 (665)
T 2dy1_A 6 GAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF--RG-HRVFLLDAP 82 (665)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE--TT-EEEEEEECC
T ss_pred cCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee--CC-EEEEEEeCC
Confidence 355789999999999999999999853221000 001122222222222 23 789999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
|+..|...+..+++.+|++++|+|+++...... ..++..+... ++|+++|+||+|+.
T Consensus 83 G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~~---~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 83 GYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAERL---GLPRMVVVTKLDKG 139 (665)
T ss_dssp CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHHT---TCCEEEEEECGGGC
T ss_pred CccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHHc---cCCEEEEecCCchh
Confidence 999998888889999999999999887643332 3444444433 68899999999986
No 176
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.79 E-value=1.6e-18 Score=130.45 Aligned_cols=122 Identities=18% Similarity=0.165 Sum_probs=81.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccccccc-----
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYR----- 105 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~----- 105 (202)
+.++|+|+|.+|+|||||+++|++........ +..+.......+...+ ..+.+|||||+..+......+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~---~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG---FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT---EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC---eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 57999999999999999999999977532222 2222222233333322 58999999998765544333332
Q ss_pred ----CccEEEEEEeCCChhHHHH-HHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCCCC
Q 028884 106 ----GAAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPD--IVMALVGNKADLHEKREV 157 (202)
Q Consensus 106 ----~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~~~ 157 (202)
.+|++++|++++... +.. ...|+..+......+ .|+++|+||+|+......
T Consensus 112 l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~ 169 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL 169 (262)
T ss_dssp TTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred HhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence 689999999987653 332 346666666543322 489999999998654433
No 177
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.79 E-value=3.2e-19 Score=129.72 Aligned_cols=161 Identities=16% Similarity=0.140 Sum_probs=99.9
Q ss_pred CCCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh----------hhh
Q 028884 28 DAKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE----------RYA 97 (202)
Q Consensus 28 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~----------~~~ 97 (202)
.+.....+|+++|++|+|||||+++|.+..+.....++.+.......+.+.+ .+.+||+||.. .+.
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~ 96 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD----GKRLVDLPGYGYAEVPEEMKRKWQ 96 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET----TEEEEECCCCC------CCHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC----CEEEEECcCCcccccCHHHHHHHH
Confidence 4456678999999999999999999998653222233333322222222222 37799999963 233
Q ss_pred hcccccc---cCccEEEEEEeCCChhHHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC--ChHHHHHHHHHcC
Q 028884 98 ALAPLYY---RGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREV--PAQDGIEYAEKNG 170 (202)
Q Consensus 98 ~~~~~~~---~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~--~~~~~~~~~~~~~ 170 (202)
.....++ ..++++++++|++.+.+.. .+..|+ .. .+.|+++++||+|+...... ....+..++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~---~~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~ 170 (210)
T 1pui_A 97 RALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWA---VD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFN 170 (210)
T ss_dssp HHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHH---HH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHH---HH---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcC
Confidence 2223333 5689999999999864443 222332 22 36889999999997643211 1234444444443
Q ss_pred --CeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 171 --MFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 171 --~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
+.++++|++++.|+++++++|.+.+.+.
T Consensus 171 ~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 171 GDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp SCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred CCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 4678999999999999999999887653
No 178
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.78 E-value=5.6e-19 Score=148.91 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=106.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEE--------EEEecCCc---------------------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQ--------TIALQDST--------------------- 81 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~--------------------- 81 (202)
...++|+|+|.+|+|||||+|+|++....+......+...... ...+.++.
T Consensus 67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 67 QGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp HCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 3579999999999999999999998775443322222100000 11000000
Q ss_pred ------------------------E--EEEEEEeCCChhhh---hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHH
Q 028884 82 ------------------------T--VKFEIWDTAGQERY---AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKEL 132 (202)
Q Consensus 82 ------------------------~--~~~~i~D~~G~~~~---~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i 132 (202)
. ..+.+|||||.... ...+..+++.+|++|+|+|++++.+......|...+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l 226 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYI 226 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHT
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHH
Confidence 0 24899999997653 345667888999999999999887776665554444
Q ss_pred HHcCCCCCeEEEEEeCCCCCCCCCCChH---H-------HHH-----HHHH--------cCCeEEEeccC----------
Q 028884 133 QKHGSPDIVMALVGNKADLHEKREVPAQ---D-------GIE-----YAEK--------NGMFFIETSAK---------- 179 (202)
Q Consensus 133 ~~~~~~~~p~ivv~nK~D~~~~~~~~~~---~-------~~~-----~~~~--------~~~~~~~~s~~---------- 179 (202)
.. .+.|+++|+||+|+........+ + ... +... ...+++++||+
T Consensus 227 ~~---~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~ 303 (695)
T 2j69_A 227 KG---RGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNP 303 (695)
T ss_dssp TT---SCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCT
T ss_pred Hh---hCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCc
Confidence 32 36789999999998643211110 1 111 1111 12368999999
Q ss_pred ----CCCCHHHHHHHHHHHcC
Q 028884 180 ----TADNINQLFEEIAKRLP 196 (202)
Q Consensus 180 ----~~~~i~~~~~~l~~~i~ 196 (202)
++.|++++++.|.+.+.
T Consensus 304 ~~~~~~~Gi~~L~~~L~~~l~ 324 (695)
T 2j69_A 304 QADLDGTGFPKFMDSLNTFLT 324 (695)
T ss_dssp TCCCTTSSHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHHHH
Confidence 99999999999988664
No 179
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.78 E-value=3.4e-18 Score=144.13 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=82.4
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhC--CCC------CC----------CccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG--QFD------PT----------SKVTVGASFLSQTIALQDSTTVKFEIWDTA 91 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~--~~~------~~----------~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 91 (202)
..+..+|+|+|++++|||||+++|+.. .+. .. .....+.......+.+. . +.+.+||||
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~--~-~~i~liDTP 85 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK--D-HRINIIDTP 85 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEET--T-EEEEEECCC
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEEC--C-eEEEEEECc
Confidence 356899999999999999999999842 110 00 01111122222222322 2 689999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
|+..|...+..+++.+|++|+|+|++++.++.....|.. +.. .++|+++|+||+|+..
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~ 143 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG 143 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999998888899999999999999998876666555543 333 3789999999999864
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.77 E-value=1.1e-17 Score=136.95 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=78.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCC----------------------ccccceeEEEEEEEecCCcEEEEEEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTS----------------------KVTVGASFLSQTIALQDSTTVKFEIW 88 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (202)
.+..+|+|+|++++|||||+++|+........ ....+.......+.+ .. +.+.+|
T Consensus 11 ~~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~--~~-~~i~li 87 (529)
T 2h5e_A 11 AKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY--HD-CLVNLL 87 (529)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE--TT-EEEEEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE--CC-eEEEEE
Confidence 35789999999999999999999963210000 000111111112222 22 689999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 89 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
||||+..|...+..+++.+|++|+|+|++++.... ...++..+ ...++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~-t~~~~~~~---~~~~ipiivviNK~Dl~~ 148 (529)
T 2h5e_A 88 DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDR-TRKLMEVT---RLRDTPILTFMNKLDRDI 148 (529)
T ss_dssp CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHH-HHHHHHHH---TTTTCCEEEEEECTTSCC
T ss_pred ECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHH-HHHHHHHH---HHcCCCEEEEEcCcCCcc
Confidence 99999998888888899999999999999864322 22332322 234789999999999864
No 181
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.76 E-value=1.4e-18 Score=134.07 Aligned_cols=112 Identities=14% Similarity=0.069 Sum_probs=69.8
Q ss_pred EEEEEEeCCChhh-------------hhhcccccccCccEEEEEEeCCC-hhHHHHHHHHHHHHHHcCCCCCeEEEEEeC
Q 028884 83 VKFEIWDTAGQER-------------YAALAPLYYRGAAVAVVVYDITS-PDSFNKAQYWVKELQKHGSPDIVMALVGNK 148 (202)
Q Consensus 83 ~~~~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK 148 (202)
..+.+|||||... +...+..+++.+|++++|+|.++ .........++..+ ...+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence 4699999999642 45667778889999999999743 21111111222223 2347899999999
Q ss_pred CCCCCCCCCChHHHHHHHHHcCCeEEEec---cCC---CCCHHHHHHHHHHHcCC
Q 028884 149 ADLHEKREVPAQDGIEYAEKNGMFFIETS---AKT---ADNINQLFEEIAKRLPR 197 (202)
Q Consensus 149 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~s---~~~---~~~i~~~~~~l~~~i~~ 197 (202)
+|+..................+..+++++ +.+ +.|+.++++.+.+.+..
T Consensus 208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence 99876543222222210011224566665 444 78999999998887754
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.76 E-value=3.1e-19 Score=140.16 Aligned_cols=156 Identities=15% Similarity=0.126 Sum_probs=103.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEE----------------------------------------
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLS---------------------------------------- 72 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~---------------------------------------- 72 (202)
..+|+|+|.+|+|||||+|+|.+..+.+......+.....
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~ 113 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDR 113 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHH
Confidence 4499999999999999999999977643332222100000
Q ss_pred ------------EEEEecCCcEEEEEEEeCCChhhh-------------hhcccccccCccEEEEEEeCCChhHHHHHHH
Q 028884 73 ------------QTIALQDSTTVKFEIWDTAGQERY-------------AALAPLYYRGAAVAVVVYDITSPDSFNKAQY 127 (202)
Q Consensus 73 ------------~~~~~~~~~~~~~~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~ 127 (202)
..+.+.......+.+|||||...+ ..+...+++.+|++|+++|..+..... ..
T Consensus 114 ~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~ 191 (360)
T 3t34_A 114 ETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SD 191 (360)
T ss_dssp TSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CH
T ss_pred hcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HH
Confidence 001111111135899999997654 566777899999999999876532221 33
Q ss_pred HHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHH
Q 028884 128 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEE 190 (202)
Q Consensus 128 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~ 190 (202)
|+..+......+.|+++|+||+|+.+...........+...++.+++.++++.+.++++.+..
T Consensus 192 ~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~ 254 (360)
T 3t34_A 192 AIKISREVDPSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDM 254 (360)
T ss_dssp HHHHHHHSCTTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCH
T ss_pred HHHHHHHhcccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCH
Confidence 455555555567899999999998765554444444444456778999999998877765443
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.76 E-value=2.9e-17 Score=138.68 Aligned_cols=119 Identities=14% Similarity=0.080 Sum_probs=82.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC--CCCCC------C----------ccccceeEEEEEEEecC----CcEEEEEEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG--QFDPT------S----------KVTVGASFLSQTIALQD----STTVKFEIW 88 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~--~~~~~------~----------~~~~~~~~~~~~~~~~~----~~~~~~~i~ 88 (202)
.+..+|+|+|+.++|||||+++|+.. .+... . ...++.......+.+.+ +..+.+.+|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 45789999999999999999999753 11100 0 01112222222222222 233789999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 89 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
||||+..|...+..+++.+|++|+|+|+++.........| ..+. ..++|+++|+||+|+..
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~-~~~~---~~~ip~ilviNKiD~~~ 148 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW-RQAN---KYKVPRIAFVNKMDRMG 148 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH-HHHH---HcCCCEEEEEeCCCccc
Confidence 9999999988888899999999999999987555444444 2232 23689999999999854
No 184
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=6.2e-18 Score=134.29 Aligned_cols=161 Identities=17% Similarity=0.137 Sum_probs=106.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh----hhhccc---ccccC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER----YAALAP---LYYRG 106 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~----~~~~~~---~~~~~ 106 (202)
-.|+++|.+|+|||||++.+.+........+..+.......+...+ ...+.+||+||... +..+.. ..+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~--~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE--EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS--SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecC--cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 4578999999999999999998642111111111122222233322 14789999999632 111211 22456
Q ss_pred ccEEEEEEeCCChhHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 107 AAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 107 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
++.+++++|++ ...+..+..|...+.... ....|.++|+||+|+... .............+.+++.+||+++.|+
T Consensus 236 a~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi 312 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGL 312 (416)
T ss_dssp SSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTH
T ss_pred HHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCH
Confidence 89999999997 444666666665554432 125789999999997653 2233344445556778999999999999
Q ss_pred HHHHHHHHHHcCCCC
Q 028884 185 NQLFEEIAKRLPRPS 199 (202)
Q Consensus 185 ~~~~~~l~~~i~~~~ 199 (202)
++++++|.+.+.+.+
T Consensus 313 ~eL~~~i~~~l~~~~ 327 (416)
T 1udx_A 313 PALKEALHALVRSTP 327 (416)
T ss_dssp HHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887654
No 185
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.75 E-value=1.3e-17 Score=140.63 Aligned_cols=117 Identities=17% Similarity=0.157 Sum_probs=82.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHh--CCCCCC---C-------------ccccceeEEEEEEEecCCcEEEEEEEeCC
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVR--GQFDPT---S-------------KVTVGASFLSQTIALQDSTTVKFEIWDTA 91 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~--~~~~~~---~-------------~~~~~~~~~~~~~~~~~~~~~~~~i~D~~ 91 (202)
..+..+|+|+|++|+|||||+++|+. +.+... . ....+.......+.+. . +.+.+||||
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~-~~i~liDTP 83 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--G-HRVNIIDTP 83 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--T-EEEEEECCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--C-eeEEEEECc
Confidence 35678999999999999999999995 221100 0 0111111112223322 2 689999999
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
|+..+...+..+++.+|++|+|+|++++.+......|.. +.. .++|+++|+||+|+..
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG 141 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence 999888888888999999999999998866665555533 333 3689999999999864
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.75 E-value=1.4e-17 Score=125.83 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=79.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCc-cccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhccc-------c
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSK-VTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAP-------L 102 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~-------~ 102 (202)
...++|+|+|.+|+|||||+|+|++..+..... +..+.......+. ... ..+.+|||||...+..... .
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~--~~~-~~l~iiDTpG~~~~~~~~~~~~~~i~~ 113 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRS--RAG-FTLNIIDTPGLIEGGYINDMALNIIKS 113 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEE--ETT-EEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEe--eCC-eEEEEEECCCCCCCccchHHHHHHHHH
Confidence 357999999999999999999999877533222 1222222122222 222 6899999999865432211 1
Q ss_pred --cccCccEEEEEEeCCChhHHHH-HHHHHHHHHHcCCCC--CeEEEEEeCCCCCCCCC
Q 028884 103 --YYRGAAVAVVVYDITSPDSFNK-AQYWVKELQKHGSPD--IVMALVGNKADLHEKRE 156 (202)
Q Consensus 103 --~~~~~d~~i~v~d~~~~~s~~~-~~~~~~~i~~~~~~~--~p~ivv~nK~D~~~~~~ 156 (202)
..+.+|++|+|+|++.. ++.. ...|+..+......+ .|+++|+||+|+.....
T Consensus 114 ~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~ 171 (270)
T 1h65_A 114 FLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDG 171 (270)
T ss_dssp HTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGG
T ss_pred HhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCC
Confidence 13468999999998753 2332 246666665543323 68999999999865443
No 187
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.73 E-value=1.7e-18 Score=137.12 Aligned_cols=86 Identities=16% Similarity=0.077 Sum_probs=47.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccce--eEEEEEEE-------------------ecCCcEEEEEEEeCCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA--SFLSQTIA-------------------LQDSTTVKFEIWDTAG 92 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~--~~~~~~~~-------------------~~~~~~~~~~i~D~~G 92 (202)
++|+++|.+|+|||||+|+|.+........+..+. ......+. +.+...+.+.+|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632112211111 11111111 1111236899999999
Q ss_pred hhh----hhhcc---cccccCccEEEEEEeCCCh
Q 028884 93 QER----YAALA---PLYYRGAAVAVVVYDITSP 119 (202)
Q Consensus 93 ~~~----~~~~~---~~~~~~~d~~i~v~d~~~~ 119 (202)
... ...+. ..+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 753 22222 2457899999999999874
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.71 E-value=2.8e-17 Score=130.63 Aligned_cols=163 Identities=15% Similarity=0.226 Sum_probs=81.9
Q ss_pred CCCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc------ccceeEEEEEEEec-CCcEEEEEEEeCCChhhhh----
Q 028884 29 AKNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV------TVGASFLSQTIALQ-DSTTVKFEIWDTAGQERYA---- 97 (202)
Q Consensus 29 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~---- 97 (202)
...-.++|+|+|++|+|||||++.|.+..+...... ..+.......+... .+....+.+||++|...+.
T Consensus 27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~ 106 (418)
T 2qag_C 27 KRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSN 106 (418)
T ss_dssp C-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC----------
T ss_pred ecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchh
Confidence 345578999999999999999999998765211110 00111111111111 2222578999999975431
Q ss_pred ---h------------------cccccccCccE--EEEEEeCCChhHHHHH-HHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 98 ---A------------------LAPLYYRGAAV--AVVVYDITSPDSFNKA-QYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 98 ---~------------------~~~~~~~~~d~--~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
. +.+.++..+++ ++|+++.+. .++... ..|+..+. .++|+|+|+||+|+..
T Consensus 107 ~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~ 181 (418)
T 2qag_C 107 CWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLT 181 (418)
T ss_dssp -CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcc-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCcc
Confidence 1 12334555554 444444431 123333 35655553 3789999999999876
Q ss_pred CCCCCh--HHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 154 KREVPA--QDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 154 ~~~~~~--~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
..++.. ..+..++...+++++++|++++.++.++|..+.+.++
T Consensus 182 ~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCCC-----------------CC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 544333 5566777788999999999999999999888877654
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.71 E-value=2.8e-18 Score=131.44 Aligned_cols=164 Identities=14% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhC-CCCCCCc------cccceeEEEEEEEec-CCcEEEEEEEeCCCh-------h
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG-QFDPTSK------VTVGASFLSQTIALQ-DSTTVKFEIWDTAGQ-------E 94 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~i~D~~G~-------~ 94 (202)
....++|+|+|++|+|||||+++|.+. .+..... ...+.......+... .+....+.+||++|. +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345799999999999999999998875 3322210 001111111112111 223368999999997 3
Q ss_pred hhhhccc-------cccc-------------CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 95 RYAALAP-------LYYR-------------GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 95 ~~~~~~~-------~~~~-------------~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
.+..+.. .+++ .+++++++.+.+.. +++... ++.+... ....++++|+||+|+...
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~--~~~l~~l-~~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLD--VAFMKAI-HNKVNIVPVIAKADTLTL 170 (301)
T ss_dssp -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHH--HHHHHHH-TTTSCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHH--HHHHHHH-HhcCCEEEEEEeCCCCCH
Confidence 3333322 2222 23446666654321 122221 1223333 246789999999998754
Q ss_pred CCC--ChHHHHHHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcCCC
Q 028884 155 REV--PAQDGIEYAEKNGMFFIETSAKTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 155 ~~~--~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~ 198 (202)
.+. ..+++.+++...+++++++||+++ |++++|..+.+.+.+.
T Consensus 171 ~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~~ 215 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKAS 215 (301)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhcC
Confidence 332 235667788888999999999999 9999999999887543
No 190
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.70 E-value=4.7e-18 Score=130.31 Aligned_cols=134 Identities=22% Similarity=0.215 Sum_probs=106.7
Q ss_pred HHHHHHHhCCCC-CCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChh-HHHHH
Q 028884 48 CIVLRFVRGQFD-PTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPD-SFNKA 125 (202)
Q Consensus 48 sli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~ 125 (202)
+|+.++..+.+. ..+.++++..+. .. ...+. .+++||+ +++++.+++.+++++|++|+|||++++. ++..+
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~-~~--~~~~~--~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l 104 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVE-YT--PDETG--SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII 104 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEE-EE--CCCSS--SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH
T ss_pred cEEEEEEcccccccCCCCCCccEEE-EE--EcCCC--eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH
Confidence 688888888887 677788874443 22 22222 6899999 8889999999999999999999999987 68888
Q ss_pred HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcC--CeEEEeccCCCCCHHHHHHHHHH
Q 028884 126 QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNG--MFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 126 ~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
..|+..+.. .++|+++|+||+|+.+...+ ++...++..+. .+++++||++|.|++++|+.+..
T Consensus 105 ~~~l~~~~~---~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 105 DKFLVLAEK---NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHH---TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHH---CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcC
Confidence 999987765 37899999999998654322 34566666666 88999999999999999998754
No 191
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.70 E-value=4.2e-16 Score=128.12 Aligned_cols=116 Identities=12% Similarity=0.109 Sum_probs=81.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCC------------------C----CCCCccccceeEEEEEEEecCCcEEEEEEE
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQ------------------F----DPTSKVTVGASFLSQTIALQDSTTVKFEIW 88 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 88 (202)
.+.-||+|+|+.++|||||.++|+... + .......++.......+.+.+ +.++|+
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlI 105 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD---RVVNLL 105 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT---EEEEEE
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC---EEEEEE
Confidence 356899999999999999999996310 0 011112223323333344433 689999
Q ss_pred eCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 89 DTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 89 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
||||+..|.......++.+|++|+|+|+..+-..+...-| ..... .++|.++++||+|...
T Consensus 106 DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~---~~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 106 DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM---RATPVMTFVNKMDREA 166 (548)
T ss_dssp CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH---TTCCEEEEEECTTSCC
T ss_pred eCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH---hCCceEEEEecccchh
Confidence 9999999999999999999999999999988544444444 33333 3789999999999754
No 192
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.66 E-value=3.1e-17 Score=128.48 Aligned_cols=160 Identities=15% Similarity=0.136 Sum_probs=94.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEE---------------------------------------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL--------------------------------------- 71 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--------------------------------------- 71 (202)
....+|+|+|.+++|||||+|+|++..+.+......+....
T Consensus 29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i 108 (353)
T 2x2e_A 29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 108 (353)
T ss_dssp CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence 34679999999999999999999997764222111000000
Q ss_pred ----------EEEEEecCCcEEEEEEEeCCChh-------------hhhhcccccccCc-cEEEEEEeCCChhHHHHHHH
Q 028884 72 ----------SQTIALQDSTTVKFEIWDTAGQE-------------RYAALAPLYYRGA-AVAVVVYDITSPDSFNKAQY 127 (202)
Q Consensus 72 ----------~~~~~~~~~~~~~~~i~D~~G~~-------------~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~ 127 (202)
...+.+.......+.+|||||.. .+..+...++..+ +++++++|++....-..
T Consensus 109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~--- 185 (353)
T 2x2e_A 109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD--- 185 (353)
T ss_dssp HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCH---
T ss_pred cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhH---
Confidence 00011111112469999999952 3455666666555 45566777765422122
Q ss_pred HHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHH--HHHcC-CeEEEeccCCCCCHHHHHHHHHH
Q 028884 128 WVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEY--AEKNG-MFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 128 ~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~--~~~~~-~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
++..+......+.|+++|+||+|+.+............ ....+ ..++++||+++.|++++++++.+
T Consensus 186 ~~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 186 ALKVAKEVDPQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHHHHCTTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHhCcCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 22223333345789999999999875433211111100 00112 24678999999999999998876
No 193
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.66 E-value=1.8e-16 Score=116.09 Aligned_cols=157 Identities=16% Similarity=0.110 Sum_probs=94.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeE------------EEEEEEecC-----------------CcE
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASF------------LSQTIALQD-----------------STT 82 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~------------~~~~~~~~~-----------------~~~ 82 (202)
...+|+|+|.+|+|||||+++|...............+. ......+.. ...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 457899999999999999999987532111000000000 000011111 012
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 162 (202)
..+.+|||+|...... .+....+.+++|+|+..... ....+... . +.|+++|+||+|+.........+.
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~--~~~~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~~~ 177 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDD--VVEKHPEI---F---RVADLIVINKVALAEAVGADVEKM 177 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTT--HHHHCHHH---H---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcch--hhhhhhhh---h---hcCCEEEEecccCCcchhhHHHHH
Confidence 5788999998511111 11124688999999886532 11111111 1 467899999999854322345555
Q ss_pred HHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 163 IEYAEKN--GMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 163 ~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
...+... ..+++++|+++|.|+++++++|.+.+.+..
T Consensus 178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~ 216 (221)
T 2wsm_A 178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS 216 (221)
T ss_dssp HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence 5555543 478999999999999999999999887654
No 194
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.64 E-value=7.2e-17 Score=126.45 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=67.6
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 162 (202)
+.+.|+||||.... ....+..+|++|+|+|....+....+.. .....|+++|+||+|+....... ...
T Consensus 172 ~~~iiiDTpGi~~~---~~~~~~~aD~vl~V~d~~~~~~~~~l~~--------~~~~~p~ivVlNK~Dl~~~~~~~-~~~ 239 (355)
T 3p32_A 172 FDVILIETVGVGQS---EVAVANMVDTFVLLTLARTGDQLQGIKK--------GVLELADIVVVNKADGEHHKEAR-LAA 239 (355)
T ss_dssp CCEEEEEECSCSSH---HHHHHTTCSEEEEEEESSTTCTTTTCCT--------TSGGGCSEEEEECCCGGGHHHHH-HHH
T ss_pred CCEEEEeCCCCCcH---HHHHHHhCCEEEEEECCCCCccHHHHHH--------hHhhcCCEEEEECCCCcChhHHH-HHH
Confidence 57999999994321 2223478999999999876643322211 11246899999999975422111 111
Q ss_pred HHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 163 IEYAEK----------NGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 163 ~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
..+... ++.+++.+||++|.|+++++++|.+.+.
T Consensus 240 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~ 283 (355)
T 3p32_A 240 RELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQ 283 (355)
T ss_dssp HHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHH
Confidence 112111 1578999999999999999999988764
No 195
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.63 E-value=3.9e-18 Score=125.41 Aligned_cols=155 Identities=16% Similarity=0.178 Sum_probs=91.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEE------------EEEEEecCCc------------------
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFL------------SQTIALQDST------------------ 81 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~------------------ 81 (202)
...+|+|+|.+|+|||||+++|....+......+...+.. ...+.+..+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 4689999999999999999999986544322222222211 1112221111
Q ss_pred -EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChH
Q 028884 82 -TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQ 160 (202)
Q Consensus 82 -~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~ 160 (202)
...+.++|++|.-... ..+-...+..+.++|......... .+... . ..|.++|+||+|+........+
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~--~~~~~---~---~~~~iiv~NK~Dl~~~~~~~~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE--KHPGI---M---KTADLIVINKIDLADAVGADIK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT--TCHHH---H---TTCSEEEEECGGGHHHHTCCHH
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh--hhhhH---h---hcCCEEEEeccccCchhHHHHH
Confidence 0145666666621110 011123456667777532211100 00011 1 4678999999998654334555
Q ss_pred HHHHHHHHc--CCeEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 161 DGIEYAEKN--GMFFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 161 ~~~~~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
+...++... +++++++||++|.|++++|++|.+.+..
T Consensus 186 ~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 186 KMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp HHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 666666553 6789999999999999999999887653
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.61 E-value=7.5e-16 Score=132.36 Aligned_cols=118 Identities=17% Similarity=0.144 Sum_probs=84.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCC----------------CCcc--ccceeEEEEEEEe-----------cCCc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDP----------------TSKV--TVGASFLSQTIAL-----------QDST 81 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------------~~~~--~~~~~~~~~~~~~-----------~~~~ 81 (202)
.+..+|+|+|+.++|||||+++|+...... .... ++........+.. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 457899999999999999999998741100 0011 1111111112221 1334
Q ss_pred EEEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 82 TVKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 82 ~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
.+.+.+|||||+.+|...+..+++.+|++|+|+|++++.+++....|.... ..++|+++|+||+|+.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~----~~~~p~ilviNK~D~~ 163 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL----GERIKPVVVINKVDRA 163 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH----HTTCEEEEEEECHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH----HcCCCeEEEEECCCcc
Confidence 589999999999999999999999999999999999987777665554433 2368999999999975
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.61 E-value=1.5e-14 Score=112.65 Aligned_cols=162 Identities=16% Similarity=0.097 Sum_probs=96.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhhhh--
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQERYA-- 97 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~~-- 97 (202)
++|+++|.+|+|||||+|+|.+........+..+.......+.+.+.. ...+.+||+||.....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~ 82 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASK 82 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccc
Confidence 689999999999999999999876322222211211111122222210 1479999999976542
Q ss_pred --hccc---ccccCccEEEEEEeCCCh----------hHHHHHHHHHHH-------------------------------
Q 028884 98 --ALAP---LYYRGAAVAVVVYDITSP----------DSFNKAQYWVKE------------------------------- 131 (202)
Q Consensus 98 --~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~------------------------------- 131 (202)
.+.. .+++.+|++++|+|+++. +.+..+..+...
T Consensus 83 ~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~~~~~~~~ 162 (363)
T 1jal_A 83 GEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGDKEAKFEL 162 (363)
T ss_dssp HGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred cchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccchhHHHHH
Confidence 2322 347889999999999852 122222111110
Q ss_pred ---------HHH-------------------c-CCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEeccCC--
Q 028884 132 ---------LQK-------------------H-GSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKT-- 180 (202)
Q Consensus 132 ---------i~~-------------------~-~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-- 180 (202)
+.. . ....+|+++++|+.|..-...........++...+.+++++||+.
T Consensus 163 ~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~ 242 (363)
T 1jal_A 163 SVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIES 242 (363)
T ss_dssp HHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHHHH
Confidence 110 0 122499999999998542112234556677777888999999653
Q ss_pred --------------------CCCHHHHHHHHHHHc
Q 028884 181 --------------------ADNINQLFEEIAKRL 195 (202)
Q Consensus 181 --------------------~~~i~~~~~~l~~~i 195 (202)
..|++.+.+.+.+.+
T Consensus 243 el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L 277 (363)
T 1jal_A 243 EIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALL 277 (363)
T ss_dssp HGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHh
Confidence 356777777766654
No 198
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.61 E-value=8.3e-16 Score=126.46 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=80.1
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC---CCCccccceeEEEEEEEecCC--------------------------
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD---PTSKVTVGASFLSQTIALQDS-------------------------- 80 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~-------------------------- 80 (202)
....++|+|+|.+|+|||||+|+|++..+. ....++. .... .+.....
T Consensus 62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T-~~~~--~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTT-DCFV--AVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCC-CSEE--EEECCSSSEEECCC------------------C
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCcc-ceEE--EEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 456789999999999999999999998763 1112111 1110 0000000
Q ss_pred ---cE----------EEEEEEeCCChhh-----------hhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcC
Q 028884 81 ---TT----------VKFEIWDTAGQER-----------YAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG 136 (202)
Q Consensus 81 ---~~----------~~~~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~ 136 (202)
.. ..+.+|||||... +...+..++..+|++|+|+|+++.........|+..+..
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~-- 216 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG-- 216 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT--
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh--
Confidence 00 2588999999764 445566678889999999999875434455566655543
Q ss_pred CCCCeEEEEEeCCCCCCC
Q 028884 137 SPDIVMALVGNKADLHEK 154 (202)
Q Consensus 137 ~~~~p~ivv~nK~D~~~~ 154 (202)
.+.|+++|+||+|+...
T Consensus 217 -~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 217 -HEDKIRVVLNKADMVET 233 (550)
T ss_dssp -CGGGEEEEEECGGGSCH
T ss_pred -cCCCEEEEEECCCccCH
Confidence 36789999999998653
No 199
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.58 E-value=4.6e-14 Score=119.52 Aligned_cols=119 Identities=17% Similarity=0.117 Sum_probs=80.9
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhC--------CCC----------CCCccccceeEEEEEEEecC----CcEEEEEE
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRG--------QFD----------PTSKVTVGASFLSQTIALQD----STTVKFEI 87 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~--------~~~----------~~~~~~~~~~~~~~~~~~~~----~~~~~~~i 87 (202)
.++.-||+|+|+.++|||||.++|+.. ... ......++.......+.+.+ ...+.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 356789999999999999999999732 110 01111222222223333322 12479999
Q ss_pred EeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC
Q 028884 88 WDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH 152 (202)
Q Consensus 88 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~ 152 (202)
+||||+..|.......++.+|++|+|+|+..+-..+...-|... ... ++|.++++||+|..
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a-~~~---~lp~i~~iNKiDr~ 150 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQA-NKY---GVPRIVYVNKMDRQ 150 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHH-HHH---TCCEEEEEECSSST
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHH-HHc---CCCeEEEEcccccc
Confidence 99999999999999999999999999999987544443434333 333 68899999999974
No 200
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.56 E-value=9.8e-16 Score=128.18 Aligned_cols=160 Identities=14% Similarity=0.128 Sum_probs=106.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC--CCC------C------C----CccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG--QFD------P------T----SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~--~~~------~------~----~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
..||+|+|+.++|||||.++|+.. ... . . ....++.......+.+.+ +.++++||||+.
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~---~~iNlIDTPGH~ 78 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN---TKVNIIDTPGHM 78 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS---CBCCCEECCCSS
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC---EEEEEEECCCcH
Confidence 358999999999999999999742 110 0 0 001122222222233322 579999999999
Q ss_pred hhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC-----------------
Q 028884 95 RYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV----------------- 157 (202)
Q Consensus 95 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~----------------- 157 (202)
.|.......++.+|++|+|+|+..+-..+...-| ...... ++|.++++||+|....+..
T Consensus 79 DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~-~~a~~~---~lp~i~~INKmDr~~a~~~~~~~~i~~~l~~~~~~~ 154 (638)
T 3j25_A 79 DFLAEVYRSLSVLDGAILLISAKDGVQAQTRILF-HALRKM---GIPTIFFINKIDQNGIDLSTVYQDIKEKLSAEIVIK 154 (638)
T ss_dssp STHHHHHHHHTTCSEEECCEESSCTTCSHHHHHH-HHHHHH---TCSCEECCEECCSSSCCSHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHH-HHHHHc---CCCeEEEEeccccccCCHHHHHHHHHHHhCCCcccc
Confidence 9999999999999999999999987433333333 334433 6789999999997532110
Q ss_pred ---------------ChHHHH------------------------------HHHHHcCCeEEEeccCCCCCHHHHHHHHH
Q 028884 158 ---------------PAQDGI------------------------------EYAEKNGMFFIETSAKTADNINQLFEEIA 192 (202)
Q Consensus 158 ---------------~~~~~~------------------------------~~~~~~~~~~~~~s~~~~~~i~~~~~~l~ 192 (202)
..+... .+....-.|++..||+++.|++.+++.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~Gv~~LLd~i~ 234 (638)
T 3j25_A 155 QKVELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNIGIDNLIEVIT 234 (638)
T ss_dssp CCCCSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCCSHHHHHHHHH
T ss_pred ceeEeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCCCchhHhhhhh
Confidence 000000 00011124678889999999999999999
Q ss_pred HHcCCCC
Q 028884 193 KRLPRPS 199 (202)
Q Consensus 193 ~~i~~~~ 199 (202)
+.+..+.
T Consensus 235 ~~~p~p~ 241 (638)
T 3j25_A 235 NKFYSST 241 (638)
T ss_dssp HSCCCSG
T ss_pred ccccCcc
Confidence 9887663
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.54 E-value=3.5e-14 Score=110.84 Aligned_cols=101 Identities=12% Similarity=0.090 Sum_probs=60.6
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 162 (202)
+.+.++||+|.... .......+|++++|+|++.+.....+.. .+ ...|.++|+||+|+.+.... ....
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~ 234 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ 234 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence 47899999996321 1223567999999999987643222211 11 24578999999997532110 0011
Q ss_pred HHHHH----------HcCCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 163 IEYAE----------KNGMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 163 ~~~~~----------~~~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
..+.. .+..+++.+|++++.|+++++++|.+.+
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~ 277 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQ 277 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHH
Confidence 11211 1245789999999999999999998765
No 202
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.6e-13 Score=107.51 Aligned_cols=156 Identities=10% Similarity=0.062 Sum_probs=96.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhh-------hhccccc
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERY-------AALAPLY 103 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~-------~~~~~~~ 103 (202)
.-..+|+++|.||+|||||+|+|++........+..+.+.....+.+.+ ..++++|+||...- .......
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~---~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG---AKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT---EEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC---cEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 3457999999999999999999998765444445555555555566554 67999999995321 1122335
Q ss_pred ccCccEEEEEEeCCChhH-HHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC--------CCCCChHHHHHHHHHcCCeEE
Q 028884 104 YRGAAVAVVVYDITSPDS-FNKAQYWVKELQKHGSPDIVMALVGNKADLHE--------KREVPAQDGIEYAEKNGMFFI 174 (202)
Q Consensus 104 ~~~~d~~i~v~d~~~~~s-~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~--------~~~~~~~~~~~~~~~~~~~~~ 174 (202)
++.+|++++|+|.++|.. .+.+...+..+.. .....|.++++||.|... ......++...+.....+..-
T Consensus 147 i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~~-~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~k 225 (376)
T 4a9a_A 147 ARTCNLLFIILDVNKPLHHKQIIEKELEGVGI-RLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSA 225 (376)
T ss_dssp HHHCSEEEEEEETTSHHHHHHHHHHHHHHTTE-EETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSE
T ss_pred HHhcCccccccccCccHHHHHHHHHHHHHhhH-hhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCC
Confidence 678999999999999833 2233333332211 123567889999999632 123445555555555544322
Q ss_pred EeccCCCCCHHHHHHH
Q 028884 175 ETSAKTADNINQLFEE 190 (202)
Q Consensus 175 ~~s~~~~~~i~~~~~~ 190 (202)
++-...+...+++.+.
T Consensus 226 pv~~~~nv~eddl~d~ 241 (376)
T 4a9a_A 226 EIAFRCDATVDDLIDV 241 (376)
T ss_dssp EEEECSCCCHHHHHHH
T ss_pred CeeecccCCHHHHHHH
Confidence 3333334455555443
No 203
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=8.3e-15 Score=123.45 Aligned_cols=156 Identities=17% Similarity=0.177 Sum_probs=96.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccce------------------------------------------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA------------------------------------------ 68 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~------------------------------------------ 68 (202)
-...+|+|+|.+++|||||+|+|++..+.+......+.
T Consensus 49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 45679999999999999999999997653322211110
Q ss_pred ---------eEEEEEEEecCCcEEEEEEEeCCChhh-------------hhhcccccc-cCccEEEEEEeCCChhHHHHH
Q 028884 69 ---------SFLSQTIALQDSTTVKFEIWDTAGQER-------------YAALAPLYY-RGAAVAVVVYDITSPDSFNKA 125 (202)
Q Consensus 69 ---------~~~~~~~~~~~~~~~~~~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~ 125 (202)
......+..++. ..+.++||||... ...+...++ ..+|++++|+|++.+......
T Consensus 129 ~g~~~~is~~~i~l~I~~P~~--~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~ 206 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPHV--LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA 206 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETTC--CSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH
T ss_pred cCCCCcccccceEEEEecCCC--CceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH
Confidence 000111111111 2578999999432 223333344 578999999999875332222
Q ss_pred HHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH----cC-CeEEEeccCCCCCHHHHHHHHHH
Q 028884 126 QYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK----NG-MFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 126 ~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~----~~-~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
..++..+. ..+.|+++|+||+|+.+....... ... ... .+ .+++.+||++|.|++++++.+.+
T Consensus 207 l~ll~~L~---~~g~pvIlVlNKiDlv~~~~~~~~-il~-~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~ 274 (772)
T 3zvr_A 207 LKIAKEVD---PQGQRTIGVITKLDLMDEGTDARD-VLE-NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 274 (772)
T ss_dssp HHHHHHHC---TTCSSEEEEEECTTSSCTTCCSHH-HHT-TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHH
T ss_pred HHHHHHHH---hcCCCEEEEEeCcccCCcchhhHH-HHH-HHhhhhhccCCceEEecccccccchhHHHHHHH
Confidence 23333333 347899999999998765433221 111 111 12 24678999999999999998876
No 204
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.53 E-value=7.6e-14 Score=109.28 Aligned_cols=85 Identities=20% Similarity=0.143 Sum_probs=53.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecC------------------CcEEEEEEEeCCChhh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQD------------------STTVKFEIWDTAGQER 95 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~i~D~~G~~~ 95 (202)
++|+++|.+|+|||||+|+|.+........+..+.........+.+ .....+.+||+||...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~ 81 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVK 81 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccc
Confidence 6899999999999999999998642211111111111111112111 0124799999999765
Q ss_pred hh----hc---ccccccCccEEEEEEeCCC
Q 028884 96 YA----AL---APLYYRGAAVAVVVYDITS 118 (202)
Q Consensus 96 ~~----~~---~~~~~~~~d~~i~v~d~~~ 118 (202)
.. .+ ...+++.+|++++|+|+++
T Consensus 82 ~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 82 GAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 11 2234788999999999985
No 205
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.52 E-value=5.5e-15 Score=115.14 Aligned_cols=103 Identities=15% Similarity=0.046 Sum_probs=63.7
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCCh--H
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPA--Q 160 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~--~ 160 (202)
+.+.++||||....... ....+|++++|+|++.+..+..+.. .. .+.|.++|+||+|+........ .
T Consensus 149 ~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~~ 217 (341)
T 2p67_A 149 YDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIARH 217 (341)
T ss_dssp CSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHHH
T ss_pred CCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHHH
Confidence 57999999996543322 3578999999999986543221111 01 1457899999999764311110 1
Q ss_pred HHHHHHHHc-------CCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 161 DGIEYAEKN-------GMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 161 ~~~~~~~~~-------~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
+........ ..+++++||++|.|+++++++|.+.+.
T Consensus 218 ~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 218 MYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp HHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 111111111 457899999999999999999988653
No 206
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.51 E-value=7.6e-14 Score=104.68 Aligned_cols=109 Identities=15% Similarity=0.069 Sum_probs=67.4
Q ss_pred EEEEEEeCCChhhhhhccc------ccccCccEEEEEEeCCCh---hHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCC
Q 028884 83 VKFEIWDTAGQERYAALAP------LYYRGAAVAVVVYDITSP---DSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE 153 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~ 153 (202)
+.+.+|||||......... ..+.. +++++++|.... ..+.....+.... ....+.|+++|+||+|+..
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~iv~NK~D~~~ 185 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLI--DLRLGATTIPALNKVDLLS 185 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHH--HHHHTSCEEEEECCGGGCC
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHH--hcccCCCeEEEEecccccc
Confidence 4799999999876543321 23455 888889987643 2222222111111 1123678999999999765
Q ss_pred CCCCChHHHHH----------------------------HHHHc--CCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 154 KREVPAQDGIE----------------------------YAEKN--GMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 154 ~~~~~~~~~~~----------------------------~~~~~--~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
.... .+... ++... ..+++++|++++.|+++++++|.+.+.
T Consensus 186 ~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 186 EEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 3211 11111 01232 247899999999999999999988764
No 207
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.45 E-value=1.8e-13 Score=104.86 Aligned_cols=98 Identities=19% Similarity=0.186 Sum_probs=79.8
Q ss_pred hhhhhhcccccccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCC-hHHHHHHHHHcC
Q 028884 93 QERYAALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVP-AQDGIEYAEKNG 170 (202)
Q Consensus 93 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~-~~~~~~~~~~~~ 170 (202)
++++..+.+.+++++|++++|+|++++. ++..+..|+..+.. .++|+++|+||+|+.+...+. .++...++...+
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence 5667788888999999999999999885 88888999887765 478999999999986543222 344556666778
Q ss_pred CeEEEeccCCCCCHHHHHHHHHH
Q 028884 171 MFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 171 ~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
.+++++||+++.|++++++.+..
T Consensus 143 ~~~~~~SA~~g~gi~~L~~~l~G 165 (302)
T 2yv5_A 143 YDVLKVSAKTGEGIDELVDYLEG 165 (302)
T ss_dssp CEEEECCTTTCTTHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHhhccC
Confidence 89999999999999999988654
No 208
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.44 E-value=1.4e-13 Score=106.97 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=61.5
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 162 (202)
..+.++||+|...-.. .....+|.+++++|...++..+.+... +. ..+.++++||+|+...........
T Consensus 148 ~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~-----~~~~ivvlNK~Dl~~~~~~s~~~~ 216 (337)
T 2qm8_A 148 FDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQGIKKG---IF-----ELADMIAVNKADDGDGERRASAAA 216 (337)
T ss_dssp CCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC------CCTT---HH-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred CCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHHHHHH---Hh-----ccccEEEEEchhccCchhHHHHHH
Confidence 5799999999643211 224678999999998755322211111 11 234577789999754222111112
Q ss_pred HHHHHH----------cCCeEEEeccCCCCCHHHHHHHHHHHc
Q 028884 163 IEYAEK----------NGMFFIETSAKTADNINQLFEEIAKRL 195 (202)
Q Consensus 163 ~~~~~~----------~~~~~~~~s~~~~~~i~~~~~~l~~~i 195 (202)
..+... +..+++.+|++++.|++++++.|.+.+
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 222221 145689999999999999999998764
No 209
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.35 E-value=9.5e-13 Score=94.06 Aligned_cols=106 Identities=8% Similarity=-0.049 Sum_probs=69.9
Q ss_pred CChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHH---HHHcC--CCCCeEEEEEeCC-CCCCCCCCChHHHHH
Q 028884 91 AGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKE---LQKHG--SPDIVMALVGNKA-DLHEKREVPAQDGIE 164 (202)
Q Consensus 91 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---i~~~~--~~~~p~ivv~nK~-D~~~~~~~~~~~~~~ 164 (202)
+|+..++.+|+.|+.++|++|||+|.+|.+-++ ....+.. +.... ..++|++|++||. |+.. .....++.+
T Consensus 110 GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e 186 (227)
T 3l82_B 110 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 186 (227)
T ss_dssp -------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHH
Confidence 378889999999999999999999999874333 3333322 22221 2688999999985 6643 334444333
Q ss_pred HHHH----cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 165 YAEK----NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 165 ~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
.... ..+.+..|||++|+|+.+.++||.+.+..++
T Consensus 187 ~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k~ 225 (227)
T 3l82_B 187 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 225 (227)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC-
T ss_pred HcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhhc
Confidence 2221 3456899999999999999999999998765
No 210
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.24 E-value=1.5e-10 Score=91.26 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=57.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCC-CCCCccccceeEEEEEEEecCC-----------c---EEEEEEEeCCChhh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQF-DPTSKVTVGASFLSQTIALQDS-----------T---TVKFEIWDTAGQER 95 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~i~D~~G~~~ 95 (202)
....+|.++|.+|+|||||+|.|.+... .....+..+.......+.+.+. . ...+.+||+||...
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 4468999999999999999999999665 2333333333332333333321 0 13589999999532
Q ss_pred -------hhhcccccccCccEEEEEEeCCC
Q 028884 96 -------YAALAPLYYRGAAVAVVVYDITS 118 (202)
Q Consensus 96 -------~~~~~~~~~~~~d~~i~v~d~~~ 118 (202)
+.......++.+|++++|+|..+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22223345678999999999863
No 211
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.24 E-value=5e-12 Score=99.47 Aligned_cols=89 Identities=13% Similarity=0.045 Sum_probs=50.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCc--------------EEEEEEEeCCChhhh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDST--------------TVKFEIWDTAGQERY 96 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~i~D~~G~~~~ 96 (202)
...++|+++|.+|+|||||+|+|.+........+..+.......+.+.+.. ...+.+||+||....
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 456899999999999999999999876533333333333333333332210 135999999997764
Q ss_pred hh-------cccccccCccEEEEEEeCCCh
Q 028884 97 AA-------LAPLYYRGAAVAVVVYDITSP 119 (202)
Q Consensus 97 ~~-------~~~~~~~~~d~~i~v~d~~~~ 119 (202)
.. .+..+++.+|++++|+|+++.
T Consensus 100 as~~~glg~~~l~~ir~aD~Il~VvD~~~~ 129 (396)
T 2ohf_A 100 AHNGQGLGNAFLSHISACDGIFHLTRAFED 129 (396)
T ss_dssp -------CCHHHHHHHTSSSEEEEEEC---
T ss_pred cchhhHHHHHHHHHHHhcCeEEEEEecCCC
Confidence 33 345567899999999998753
No 212
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=91.63 Aligned_cols=108 Identities=8% Similarity=-0.040 Sum_probs=73.4
Q ss_pred CCChhhhhhcccccccCccEEEEEEeCCChhHHH---HHHHHHHHHHHc-CCCCCeEEEEEeC-CCCCCCCCCChHHHHH
Q 028884 90 TAGQERYAALAPLYYRGAAVAVVVYDITSPDSFN---KAQYWVKELQKH-GSPDIVMALVGNK-ADLHEKREVPAQDGIE 164 (202)
Q Consensus 90 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~i~~~-~~~~~p~ivv~nK-~D~~~~~~~~~~~~~~ 164 (202)
.+|+..++.+|+.|+.++|++|||+|.+|.+.++ ++.+....+... ...++|++|++|| .|+.. .....++.+
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e 271 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH 271 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence 3577888999999999999999999999875433 222221222221 1358999999996 57643 333444333
Q ss_pred HHHH----cCCeEEEeccCCCCCHHHHHHHHHHHcCCCC
Q 028884 165 YAEK----NGMFFIETSAKTADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 165 ~~~~----~~~~~~~~s~~~~~~i~~~~~~l~~~i~~~~ 199 (202)
.... ....+..|||.+|+|+.+.++||.+.+..++
T Consensus 272 ~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k~ 310 (312)
T 3l2o_B 272 ELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESKR 310 (312)
T ss_dssp HTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC--
T ss_pred HcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhhc
Confidence 2221 3455899999999999999999999998765
No 213
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.99 E-value=8.5e-10 Score=86.61 Aligned_cols=98 Identities=23% Similarity=0.246 Sum_probs=73.2
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHH----HHH
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE----YAE 167 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~ 167 (202)
..+.|...+..+.+.+|++++|+|++++. ..|...+.+.. .++|+++|+||+|+.+.. ...+...+ ++.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~ 127 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK 127 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence 35778888888999999999999999863 34555555542 378999999999987543 22233333 355
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 168 KNGM---FFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 168 ~~~~---~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
..+. .++.+||++|.|++++++.|.+...
T Consensus 128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 128 QLGLKPEDVFLISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence 6676 7999999999999999999987553
No 214
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.96 E-value=3.4e-10 Score=91.92 Aligned_cols=153 Identities=14% Similarity=0.119 Sum_probs=83.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHH------hCCCCC----CCcccc-----------ceeEEEEEEE------------e
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFV------RGQFDP----TSKVTV-----------GASFLSQTIA------------L 77 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~------~~~~~~----~~~~~~-----------~~~~~~~~~~------------~ 77 (202)
.....|+|+|.+|+||||++++|. +.+... .+.+.. .......... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 322100 000000 0111010000 0
Q ss_pred cCCcEEEEEEEeCCChhhhh-hcc---ccc--ccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeE-EEEEeCCC
Q 028884 78 QDSTTVKFEIWDTAGQERYA-ALA---PLY--YRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVM-ALVGNKAD 150 (202)
Q Consensus 78 ~~~~~~~~~i~D~~G~~~~~-~~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~D 150 (202)
.....+.+.|+||||..... .++ ... +-.+|.+++|+|+........ ....+.. .+|+ ++|+||.|
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~---~a~~~~~----~~~i~gvVlNK~D 251 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA---QAKAFKD----KVDVASVIVTKLD 251 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH---HHHHHHH----HHCCCCEEEECTT
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH---HHHHHHh----hcCceEEEEeCCc
Confidence 00012579999999964211 111 001 126899999999987632211 1222222 1564 88899999
Q ss_pred CCCCCCCChHHHHHHHHHcCCeE------------------EEeccCCCCC-HHHHHHHHHHH
Q 028884 151 LHEKREVPAQDGIEYAEKNGMFF------------------IETSAKTADN-INQLFEEIAKR 194 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~------------------~~~s~~~~~~-i~~~~~~l~~~ 194 (202)
...... .........+.++ +.+|+..|.| +.++++++.+.
T Consensus 252 ~~~~~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 252 GHAKGG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp SCCCCT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred cccchH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 753321 1222333444443 2368889988 99999998866
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.91 E-value=1.4e-10 Score=91.17 Aligned_cols=140 Identities=16% Similarity=0.113 Sum_probs=78.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC-----CCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhh--------c
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG-----QFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAA--------L 99 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~--------~ 99 (202)
..+|+++|.+|+|||||+|+|++. ....... ..++......+.+.. .+.++||||...... .
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~-~~gtT~~~~~~~~~~----~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSY-FPGTTLDMIEIPLES----GATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEE-CTTSSCEEEEEECST----TCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecC-CCCeEEeeEEEEeCC----CeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999985 1111111 111222222233322 278999999532111 1
Q ss_pred ccccc--cCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEec
Q 028884 100 APLYY--RGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 100 ~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 177 (202)
...++ +..+.++++++......+..+.. +......+.|+++++||.|....... ......+.+..+..+...+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 311 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPS 311 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSC
T ss_pred HHHHhcccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCC
Confidence 11111 56789999999853311111110 12222457899999999997654332 3334445556666555555
Q ss_pred cCCCC
Q 028884 178 AKTAD 182 (202)
Q Consensus 178 ~~~~~ 182 (202)
+.+..
T Consensus 312 ~~~~~ 316 (369)
T 3ec1_A 312 KRYAA 316 (369)
T ss_dssp GGGTT
T ss_pred chhhh
Confidence 54433
No 216
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.90 E-value=2.5e-08 Score=79.12 Aligned_cols=159 Identities=14% Similarity=0.140 Sum_probs=83.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccce-eEEEEEEEecCCcEEEEEEEeCCChhhhh-----hcccccccCc
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGA-SFLSQTIALQDSTTVKFEIWDTAGQERYA-----ALAPLYYRGA 107 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~D~~G~~~~~-----~~~~~~~~~~ 107 (202)
..++|+|++|+|||||+|.+.+-............ ......+.........+.++|++|..... .+...-+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCcc
Confidence 37999999999999999999984321111111100 00000011111111257889999853211 1111123334
Q ss_pred cEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCC-------CCCCCChHHH----HHHH----HHc---
Q 028884 108 AVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLH-------EKREVPAQDG----IEYA----EKN--- 169 (202)
Q Consensus 108 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~-------~~~~~~~~~~----~~~~----~~~--- 169 (202)
+..++ ++...+. -.. ......+.. .+.|+++|.||.|+. .-......+. ..++ ...
T Consensus 150 ~~~~~-lS~G~~~-kqr-v~la~aL~~---~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 150 DFFII-ISATRFK-KND-IDIAKAISM---MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp SEEEE-EESSCCC-HHH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCeEE-eCCCCcc-HHH-HHHHHHHHh---cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 55555 7776321 111 112222332 257999999999963 1111222222 2232 122
Q ss_pred CCeEEEecc--CCCCCHHHHHHHHHHHcCCC
Q 028884 170 GMFFIETSA--KTADNINQLFEEIAKRLPRP 198 (202)
Q Consensus 170 ~~~~~~~s~--~~~~~i~~~~~~l~~~i~~~ 198 (202)
...++.+|+ ..+.|++++.+.+.+.+.+-
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 235788898 66678999999999887653
No 217
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.89 E-value=2.8e-09 Score=84.63 Aligned_cols=145 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCcc--ccceeEEEEEEEecC-CcEEEEEEEeCCChhh-----------
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKV--TVGASFLSQTIALQD-STTVKFEIWDTAGQER----------- 95 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~i~D~~G~~~----------- 95 (202)
....++++|+|++|+|||||++.|.+..+...... ..........+.... +-...+.++|++|...
T Consensus 39 ~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i 118 (427)
T 2qag_B 39 QGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPI 118 (427)
T ss_dssp -CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHH
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHH
Confidence 33456799999999999999999998653221111 111111111111112 2224688999987421
Q ss_pred -------hhhcccc---------cccCc--c-EEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 96 -------YAALAPL---------YYRGA--A-VAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 96 -------~~~~~~~---------~~~~~--d-~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
+...... ....+ | +++++.|...+.+..+ ++.+.... .++|+|+|.||+|.....+
T Consensus 119 ~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D----ieilk~L~-~~~~vI~Vi~KtD~Lt~~E 193 (427)
T 2qag_B 119 VEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD----LVTMKKLD-SKVNIIPIIAKADAISKSE 193 (427)
T ss_dssp HHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH----HHHHHHTC-SCSEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH----HHHHHHHh-hCCCEEEEEcchhccchHH
Confidence 1111111 11222 3 3556667665433222 12233332 5789999999999765332
Q ss_pred CCh--HHHHHHHHHcCCeEEEeccC
Q 028884 157 VPA--QDGIEYAEKNGMFFIETSAK 179 (202)
Q Consensus 157 ~~~--~~~~~~~~~~~~~~~~~s~~ 179 (202)
... ..+.......++.++.+|.-
T Consensus 194 ~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 194 LTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHHHHHHHcCCcEEecCCC
Confidence 111 11111122346677777743
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.84 E-value=1.1e-10 Score=91.62 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=73.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCC---C--CccccceeEEEEEEEecCCcEEEEEEEeCCChhhhhhc--------
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDP---T--SKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAAL-------- 99 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~-------- 99 (202)
..+|+++|.+|+|||||+|+|++..... . .....++......+.+.. .+.++||||......+
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~----~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDE----ESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSS----SCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecC----CeEEEeCCCcCcHHHHHHHhhHHH
Confidence 3589999999999999999999853211 0 111111222222233222 2789999995322111
Q ss_pred ccc--cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHHcCCeEEEec
Q 028884 100 APL--YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 100 ~~~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s 177 (202)
... ..+..+..+++++......+..+.. +......+.|+++++||.|....... ......+.+..+..++..+
T Consensus 236 l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~~-~~~~~~~~~~~g~~l~p~~ 310 (368)
T 3h2y_A 236 LKLITPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTKL-EKADELYKNHAGDLLSPPT 310 (368)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEH-HHHHHHHHHHBTTTBCSSC
T ss_pred HHHhccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCccccccccH-HHHHHHHHHHhCCccCCCc
Confidence 111 1355788899998743211111100 11222457899999999997654322 2233344455555444443
No 219
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.82 E-value=3.7e-08 Score=74.09 Aligned_cols=117 Identities=18% Similarity=0.195 Sum_probs=62.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccc-----cceeEEEEEEEe-cCCc--EEEEEEEeCCChhh---------
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVT-----VGASFLSQTIAL-QDST--TVKFEIWDTAGQER--------- 95 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~--~~~~~i~D~~G~~~--------- 95 (202)
.++++|+|+.|+|||||++.|.+.......... .........+.+ .... ...+.++|++|...
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHH
Confidence 589999999999999999999984322111000 000000011111 1111 13678999988311
Q ss_pred ---------hhh----------cccccccCccEEEEEEeCC-ChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 96 ---------YAA----------LAPLYYRGAAVAVVVYDIT-SPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 96 ---------~~~----------~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
+.. ..+..+..+++.++++|.. .+-.... ...+..+. .. .++++|++|.|....
T Consensus 82 ~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD-~~~l~~L~---~~-~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 82 PIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLD-LEFMKHLS---KV-VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHH-HHHHHHHH---TT-SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHH-HHHHHHHH---hc-CcEEEEEeccccCCH
Confidence 000 0122233468888899865 3322122 23333333 22 889999999997653
No 220
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.82 E-value=2.7e-09 Score=83.76 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=71.5
Q ss_pred ChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHH----HHH
Q 028884 92 GQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIE----YAE 167 (202)
Q Consensus 92 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~----~~~ 167 (202)
.++.|......+.+.++++++|+|++++.+ .|...+.+. ..++|+++|+||+|+.+... ..+.... ++.
T Consensus 57 ~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~-l~~~piilV~NK~DLl~~~~-~~~~~~~~l~~~~~ 129 (369)
T 3ec1_A 57 DDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRF-AADNPILLVGNKADLLPRSV-KYPKLLRWMRRMAE 129 (369)
T ss_dssp --CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHH-CTTSCEEEEEECGGGSCTTC-CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHH-hCCCCEEEEEEChhcCCCcc-CHHHHHHHHHHHHH
Confidence 367888888888888999999999999753 233333333 23789999999999875432 2233333 345
Q ss_pred HcCC---eEEEeccCCCCCHHHHHHHHHHHcCC
Q 028884 168 KNGM---FFIETSAKTADNINQLFEEIAKRLPR 197 (202)
Q Consensus 168 ~~~~---~~~~~s~~~~~~i~~~~~~l~~~i~~ 197 (202)
..+. .++.+||++|.|++++++.+.+....
T Consensus 130 ~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~ 162 (369)
T 3ec1_A 130 ELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG 162 (369)
T ss_dssp TTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT
T ss_pred HcCCCcccEEEEECCCCCCHHHHHHHHHhhccc
Confidence 5665 68999999999999999999876543
No 221
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.76 E-value=5.6e-09 Score=79.03 Aligned_cols=100 Identities=16% Similarity=0.075 Sum_probs=67.8
Q ss_pred EEeCCChh-hhhhcccccccCccEEEEEEeCCChhHHH--HHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHH
Q 028884 87 IWDTAGQE-RYAALAPLYYRGAAVAVVVYDITSPDSFN--KAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGI 163 (202)
Q Consensus 87 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~ 163 (202)
+-..||+. .........+..+|+++.|+|+.++.+.. .+.+|+ .++|.++|+||+|+.+.. ..+...
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~--~~~~~~ 72 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAA--VTQQWK 72 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHH--HHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHH--HHHHHH
Confidence 34578875 34455566788899999999999986553 334432 478999999999987521 122233
Q ss_pred HHHHHcCCeEEEeccCCCCCHHHHHHHHHHHcC
Q 028884 164 EYAEKNGMFFIETSAKTADNINQLFEEIAKRLP 196 (202)
Q Consensus 164 ~~~~~~~~~~~~~s~~~~~~i~~~~~~l~~~i~ 196 (202)
.+....+.+++.+|++++.|+.++++.+.+.+.
T Consensus 73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence 444455778999999999999999988776653
No 222
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.49 E-value=1.8e-07 Score=70.74 Aligned_cols=59 Identities=22% Similarity=0.373 Sum_probs=35.9
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
...++|+++|.+|+|||||+|+|.+.......... +.......+.. +. .+.++||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~-g~T~~~~~~~~-~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRP-GITTSQQWVKV-GK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEE-TT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCC-CeeeeeEEEEe-CC---CEEEEECcCcC
Confidence 45689999999999999999999986643332211 11111112222 21 48899999953
No 223
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.46 E-value=2.9e-07 Score=73.52 Aligned_cols=86 Identities=15% Similarity=0.100 Sum_probs=50.3
Q ss_pred EEEEEEeCCChhhh-----hhccc-ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERY-----AALAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~-----~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
+.+.++||+|.... ..+.. .....+|.+++|+|+......... ...+... -.+..||+||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~---a~~f~~~---~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ---ALAFKEA---TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH---HHHHHHS---CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH---HHHHHhh---CCCeEEEEECCCCccc--
Confidence 57999999994321 11110 112247899999999875332222 1223322 1236788999996532
Q ss_pred CChHHHHHHHHHcCCeEEEecc
Q 028884 157 VPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
...+.......+.|+.+++.
T Consensus 255 --gG~~ls~~~~~g~PI~fig~ 274 (443)
T 3dm5_A 255 --GGGALSAVAATGAPIKFIGT 274 (443)
T ss_dssp --HHHHHHHHHTTCCCEEEEEC
T ss_pred --ccHHHHHHHHHCCCEEEEEc
Confidence 23345555567888877765
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.40 E-value=1.3e-07 Score=70.83 Aligned_cols=56 Identities=21% Similarity=0.280 Sum_probs=34.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQE 94 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~ 94 (202)
++++++|.+|+|||||+|+|.+........ ..+.......+.. + ..+.+|||||..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~~~~-~---~~~~l~DtpG~~ 155 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQWFSL-E---NGVKILDTPGIL 155 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEEC-T---TSCEEESSCEEC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEEEEe-C---CCEEEEECCCcc
Confidence 799999999999999999999866532221 1121111112222 1 158899999964
No 225
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.39 E-value=3.4e-07 Score=73.24 Aligned_cols=83 Identities=16% Similarity=0.085 Sum_probs=47.5
Q ss_pred EEEEEEeCCChhhh-----hhcc-cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCC-e-EEEEEeCCCCCCC
Q 028884 83 VKFEIWDTAGQERY-----AALA-PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDI-V-MALVGNKADLHEK 154 (202)
Q Consensus 83 ~~~~i~D~~G~~~~-----~~~~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~-p-~ivv~nK~D~~~~ 154 (202)
+.+.++||||.... ..+. ...+..+|.+++|+|+..+.. .......+. ... | ..+|+||.|....
T Consensus 181 ~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~----~~~~~i~gvVlnK~D~~~~ 253 (432)
T 2v3c_C 181 ADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAFK----EAVGEIGSIIVTKLDGSAK 253 (432)
T ss_dssp CSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHHH----TTSCSCEEEEEECSSSCST
T ss_pred CCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHHh----hcccCCeEEEEeCCCCccc
Confidence 57899999995421 1111 112235899999999876532 111222222 234 5 7889999996432
Q ss_pred CCCChHHHHHHHHHcCCeEEEe
Q 028884 155 REVPAQDGIEYAEKNGMFFIET 176 (202)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~ 176 (202)
...........+.++..+
T Consensus 254 ----~g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 254 ----GGGALSAVAETKAPIKFI 271 (432)
T ss_dssp ----THHHHHHHHHSSCCEEEE
T ss_pred ----hHHHHHHHHHHCCCEEEe
Confidence 123344556666665554
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.32 E-value=1.1e-06 Score=72.67 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=39.7
Q ss_pred CCceeeEEEEcCCCCcHHHHHHHHHhCCCC-CCCccccceeEEEEEE--EecCCcEEEEEEEeCCChhh
Q 028884 30 KNLRVKLVLLGDSGVGKSCIVLRFVRGQFD-PTSKVTVGASFLSQTI--ALQDSTTVKFEIWDTAGQER 95 (202)
Q Consensus 30 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~D~~G~~~ 95 (202)
..+.++|+|+|.+|+|||||+|+|++.... .....+.........+ .........+.++||||...
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 356789999999999999999999987532 1111111111111111 11111224789999999643
No 227
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.32 E-value=1.3e-07 Score=72.10 Aligned_cols=91 Identities=21% Similarity=0.177 Sum_probs=62.9
Q ss_pred hhcccccccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC--CChHHHHHHHHHcCCeE
Q 028884 97 AALAPLYYRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE--VPAQDGIEYAEKNGMFF 173 (202)
Q Consensus 97 ~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~ 173 (202)
..+.+..+.++|.+++|+|+.+|. +...+..++.... ..++|.+||+||+|+.+... .............+.++
T Consensus 77 ~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~---~~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v 153 (307)
T 1t9h_A 77 NELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVE---ANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDV 153 (307)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHH---TTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCE
T ss_pred hhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHH---HCCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeE
Confidence 345556788999999999999774 3344455544333 34788999999999876432 01233444555568889
Q ss_pred EEeccCCCCCHHHHHHH
Q 028884 174 IETSAKTADNINQLFEE 190 (202)
Q Consensus 174 ~~~s~~~~~~i~~~~~~ 190 (202)
+.+|+.++.|++++++.
T Consensus 154 ~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 154 YLTSSKDQDSLADIIPH 170 (307)
T ss_dssp EECCHHHHTTCTTTGGG
T ss_pred EEEecCCCCCHHHHHhh
Confidence 99999999888776543
No 228
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.27 E-value=1.9e-07 Score=69.81 Aligned_cols=93 Identities=16% Similarity=0.096 Sum_probs=60.3
Q ss_pred CCChhhh-hhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHHHHHHHH
Q 028884 90 TAGQERY-AALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEK 168 (202)
Q Consensus 90 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~ 168 (202)
.||+... .......+..+|+++.|+|+.+|.+..... +. .. ++|.++|+||+|+.+.. ..+....+...
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~-----l~-ll--~k~~iivlNK~DL~~~~--~~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYG-----VD-FS--RKETIILLNKVDIADEK--TTKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTT-----SC-CT--TSEEEEEEECGGGSCHH--HHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChH-----HH-hc--CCCcEEEEECccCCCHH--HHHHHHHHHHH
Confidence 3565432 234455678899999999999885543210 11 11 78999999999987531 12233444455
Q ss_pred cCCeEEEeccCCCCCHHHHHHHHHH
Q 028884 169 NGMFFIETSAKTADNINQLFEEIAK 193 (202)
Q Consensus 169 ~~~~~~~~s~~~~~~i~~~~~~l~~ 193 (202)
.+.++ .+|++++.|++++++.+..
T Consensus 74 ~g~~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 74 QGKRV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp TTCCE-EECCTTSCHHHHHHHHCCC
T ss_pred cCCeE-EEECCCCcCHHHHHHHHHH
Confidence 67788 9999999999998887654
No 229
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.19 E-value=5.5e-07 Score=71.80 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=51.0
Q ss_pred EEEEEEeCCChhh-------hhhccc-ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCC
Q 028884 83 VKFEIWDTAGQER-------YAALAP-LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEK 154 (202)
Q Consensus 83 ~~~~i~D~~G~~~-------~~~~~~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~ 154 (202)
+.+.++||+|... ...+.. ...-..|.+++|+|+........+ ...+... -.+..||+||.|...
T Consensus 180 ~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~---a~~f~~~---~~~~gVIlTKlD~~a- 252 (433)
T 3kl4_A 180 MDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL---ASRFHQA---SPIGSVIITKMDGTA- 252 (433)
T ss_dssp CSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH---HHHHHHH---CSSEEEEEECGGGCS-
T ss_pred CCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH---HHHHhcc---cCCcEEEEecccccc-
Confidence 5788999999532 111110 011136899999999875332222 2223322 134688899999642
Q ss_pred CCCChHHHHHHHHHcCCeEEEecc
Q 028884 155 REVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
....+.......+.|+.+++.
T Consensus 253 ---~~G~als~~~~~g~Pi~fig~ 273 (433)
T 3kl4_A 253 ---KGGGALSAVVATGATIKFIGT 273 (433)
T ss_dssp ---CHHHHHHHHHHHTCEEEEEEC
T ss_pred ---cchHHHHHHHHHCCCEEEEEC
Confidence 234455666677899877775
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.15 E-value=4.9e-06 Score=69.42 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.|+|+|+.|||||||++.+.+-.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 49999999999999999999853
No 231
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.04 E-value=1.1e-05 Score=62.74 Aligned_cols=87 Identities=18% Similarity=0.178 Sum_probs=57.9
Q ss_pred ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCC-ChHHHHHHHHHcCCeEEEeccCC
Q 028884 102 LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREV-PAQDGIEYAEKNGMFFIETSAKT 180 (202)
Q Consensus 102 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~ 180 (202)
..+.++|.+++|.+.....+...+..++...... ++|.+||+||+|+.+.... ..+.........+.+++.+|+.+
T Consensus 126 ~i~anvD~v~iv~a~~P~~~~~~i~r~L~~a~~~---~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~ 202 (358)
T 2rcn_A 126 PIAANIDQIVIVSAILPELSLNIIDRYLVGCETL---QVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT 202 (358)
T ss_dssp EEEECCCEEEEEEESTTTCCHHHHHHHHHHHHHH---TCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred HHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHhc---CCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 3467899999887654223344556665544433 6778999999998754210 01223344445688899999999
Q ss_pred CCCHHHHHHHH
Q 028884 181 ADNINQLFEEI 191 (202)
Q Consensus 181 ~~~i~~~~~~l 191 (202)
+.|++++...+
T Consensus 203 ~~gl~~L~~~~ 213 (358)
T 2rcn_A 203 QDGLKPLEEAL 213 (358)
T ss_dssp TBTHHHHHHHH
T ss_pred CcCHHHHHHhc
Confidence 99999877654
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.96 E-value=4e-06 Score=63.83 Aligned_cols=89 Identities=17% Similarity=0.110 Sum_probs=52.7
Q ss_pred EEEEEEeCCChhh--hh-hccc-----ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCC
Q 028884 83 VKFEIWDTAGQER--YA-ALAP-----LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHE 153 (202)
Q Consensus 83 ~~~~i~D~~G~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~ 153 (202)
+.+.++||||... .. .+.. .....+|.+++|+|+..... .......+.. ..+ ..+|+||.|...
T Consensus 181 ~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~~~----~~~i~gvVlnk~D~~~ 253 (297)
T 1j8m_F 181 MEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQK---AYDLASKFNQ----ASKIGTIIITKMDGTA 253 (297)
T ss_dssp CSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG---HHHHHHHHHH----TCTTEEEEEECGGGCT
T ss_pred CCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHH---HHHHHHHHHh----hCCCCEEEEeCCCCCc
Confidence 5799999999655 21 1111 12335899999999875421 1122222322 244 678899999542
Q ss_pred CCCCChHHHHHHHHHcCCeEEEeccCCCCCH
Q 028884 154 KREVPAQDGIEYAEKNGMFFIETSAKTADNI 184 (202)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i 184 (202)
............+.++..++ .|+++
T Consensus 254 ----~~g~~~~~~~~~~~pi~~i~--~Ge~v 278 (297)
T 1j8m_F 254 ----KGGGALSAVAATGATIKFIG--TGEKI 278 (297)
T ss_dssp ----THHHHHHHHHTTTCCEEEEE--CSSST
T ss_pred ----chHHHHHHHHHHCcCEEEEe--CCCCh
Confidence 23345566677788877766 34444
No 233
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.82 E-value=2.5e-05 Score=62.58 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+..-|.|+|++++|||+|+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 45666779999999999999999863
No 234
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.81 E-value=2.1e-06 Score=69.45 Aligned_cols=102 Identities=15% Similarity=0.092 Sum_probs=58.1
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhCCCCCCCccccceeEEEEEEEecCCcEEEEEEEeCCChhh--hhhcc--------
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQER--YAALA-------- 100 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~--~~~~~-------- 100 (202)
.....|+++|.+|+||||+.++|........ .++.............+.. ....+||..|.+. .+..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~-~~t~~~~~d~~r~~~~g~~-~~~~ifd~~g~~~~r~re~~~~~~l~~~ 114 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG-VPTREFNVGQYRRDMVKTY-KSFEFFLPDNEEGLKIRKQCALAALNDV 114 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT-CCEEEEEHHHHHHHHHCSC-CCGGGGCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC-CCceEEecchhhhhhccCC-CcccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999876421111 1111000000000001111 2346789988732 23332
Q ss_pred cccccCccEEEEEEeCCChhHHHHHHHHHHHHHHc
Q 028884 101 PLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKH 135 (202)
Q Consensus 101 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~ 135 (202)
..++...++.++|+|.++. +......|+..+...
T Consensus 115 ~~~l~~~~G~~vV~D~tn~-~~~~R~~~~~~~~~~ 148 (469)
T 1bif_A 115 RKFLSEEGGHVAVFDATNT-TRERRAMIFNFGEQN 148 (469)
T ss_dssp HHHHHTTCCSEEEEESCCC-SHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCEEEEeCCCC-CHHHHHHHHHHHHhc
Confidence 4455567888999999987 355556676666554
No 235
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.43 E-value=9.1e-05 Score=51.95 Aligned_cols=23 Identities=35% Similarity=0.772 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+++++|++|+|||||++.+.+.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999988874
No 236
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.33 E-value=0.00024 Score=55.26 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQF 58 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~~ 58 (202)
.++|+|++|+|||||+|.|.+...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999998553
No 237
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=0.00013 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.641 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++|+|++|||||||++.|.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 238
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.32 E-value=0.00058 Score=54.59 Aligned_cols=83 Identities=14% Similarity=0.079 Sum_probs=44.5
Q ss_pred EEEEEEeCCChhhhh-hccc-----ccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCe-EEEEEeCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYA-ALAP-----LYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIV-MALVGNKADLHEKR 155 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p-~ivv~nK~D~~~~~ 155 (202)
+.+.|+||||..... .+.. ..+..+|.+++|+|+........ ....+.. ..+ .-+|+||.|.....
T Consensus 184 ~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~---~~~~f~~----~l~i~gvVlnK~D~~~~~ 256 (433)
T 2xxa_A 184 YDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN---TAKAFNE----ALPLTGVVLTKVDGDARG 256 (433)
T ss_dssp CSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH---HHHHHHH----HSCCCCEEEECTTSSSCC
T ss_pred CCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH---HHHHHhc----cCCCeEEEEecCCCCccH
Confidence 579999999953321 1111 11335789999999876532211 1222222 123 34689999964321
Q ss_pred CCChHHHHHHHHHcCCeEEEe
Q 028884 156 EVPAQDGIEYAEKNGMFFIET 176 (202)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~ 176 (202)
..........+.++..+
T Consensus 257 ----g~~l~i~~~~~~Pi~~i 273 (433)
T 2xxa_A 257 ----GAALSIRHITGKPIKFL 273 (433)
T ss_dssp ----THHHHHHHHHCCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEE
Confidence 23334555556654443
No 239
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.25 E-value=0.00017 Score=51.35 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
-.++|+|++|+|||||++.+.+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999986
No 240
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.16 E-value=0.00024 Score=50.53 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++++|++|||||||++.+.+.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 241
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.15 E-value=0.00024 Score=49.97 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-.|+++|++|||||||++.|.+.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999874
No 242
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.14 E-value=0.00025 Score=49.87 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
++|+|+.|+|||||++.|.+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999863
No 243
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.12 E-value=8.2e-05 Score=56.73 Aligned_cols=24 Identities=33% Similarity=0.429 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-.++|+|++|+|||||+|.|.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 478999999999999999998753
No 244
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.10 E-value=0.00022 Score=49.50 Aligned_cols=20 Identities=40% Similarity=0.634 Sum_probs=17.4
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 028884 35 KLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~ 54 (202)
-++++|++|||||||++.+.
T Consensus 11 i~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEECCTTSCHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 57899999999999999643
No 245
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.09 E-value=0.00031 Score=50.34 Aligned_cols=24 Identities=38% Similarity=0.369 Sum_probs=20.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
--++|+|+.|||||||++.+.+-.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358899999999999999998743
No 246
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.08 E-value=0.00032 Score=50.83 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=21.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.--++|+|+.|+|||||++.+.+..
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3468899999999999999998743
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.07 E-value=0.00037 Score=49.95 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+...|+|+|++|||||||++.+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999998876
No 248
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.06 E-value=0.00033 Score=50.66 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.-.++|+|+.|+|||||++.+.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4468999999999999999998743
No 249
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.04 E-value=0.0005 Score=48.93 Aligned_cols=24 Identities=46% Similarity=0.657 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.--|+|+|++|+|||||++.|...
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEECcCCCCHHHHHHHHHhh
Confidence 446889999999999999999864
No 250
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.03 E-value=0.00038 Score=49.91 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.--|+|+|++|+|||||++.|....
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3458899999999999999998753
No 251
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.00 E-value=0.00069 Score=49.00 Aligned_cols=21 Identities=29% Similarity=0.545 Sum_probs=18.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-|+|+|+|||||+|....|..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 466899999999999988865
No 252
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.99 E-value=0.00046 Score=48.67 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
|+|+|++|+||+||+++|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999864
No 253
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.96 E-value=0.0005 Score=47.51 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..|+++|++||||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999988763
No 254
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.95 E-value=0.00052 Score=47.09 Aligned_cols=25 Identities=28% Similarity=0.517 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.-.++++|+.|+|||||++.+.+..
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3468899999999999999998754
No 255
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.95 E-value=0.0005 Score=49.06 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..-|+|+|++|||||||++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 346899999999999999999763
No 256
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.94 E-value=0.0007 Score=48.10 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=21.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.....|+|.|.+||||||+.+.|..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 257
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.93 E-value=0.0006 Score=48.78 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+...|+|+|+.|||||||++.+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999998876
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.93 E-value=0.00053 Score=48.78 Aligned_cols=25 Identities=36% Similarity=0.530 Sum_probs=21.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
...|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998754
No 259
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.92 E-value=0.00052 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=18.5
Q ss_pred eeEEEEcCCCCcHHHHHHHH
Q 028884 34 VKLVLLGDSGVGKSCIVLRF 53 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l 53 (202)
.-|+|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 260
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.92 E-value=0.00055 Score=48.11 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-++++|++|+|||||++.+.+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 261
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.91 E-value=0.00058 Score=47.39 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|.|.+||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4589999999999999999986
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.91 E-value=0.00049 Score=50.44 Aligned_cols=23 Identities=26% Similarity=0.239 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++++|+.|||||||++.+.+-
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 35889999999999999988873
No 263
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.89 E-value=0.00059 Score=46.97 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|+|.|.+||||||+.+.|..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999875
No 264
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.89 E-value=0.00061 Score=48.45 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.|+|+|++|||||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999998875
No 265
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.86 E-value=0.00065 Score=48.04 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|++|+|||||++.+.+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5889999999999999988763
No 266
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.86 E-value=0.00064 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.=.++|+|++|||||||++.+.+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 344689999999999999998886
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.85 E-value=0.00066 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3799999999999999998854
No 268
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.85 E-value=0.0007 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.610 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHH
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~ 54 (202)
...|+|+|++|||||||++.+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999988
No 269
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.84 E-value=0.00069 Score=49.82 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 270
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.84 E-value=0.00056 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998873
No 271
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.83 E-value=0.0007 Score=48.63 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998864
No 272
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.82 E-value=0.0011 Score=45.93 Aligned_cols=22 Identities=36% Similarity=0.492 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
-.|+++|++||||||+++.|.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 4689999999999999998865
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.80 E-value=0.001 Score=46.57 Aligned_cols=25 Identities=16% Similarity=0.397 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
....|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999988764
No 274
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.79 E-value=0.00088 Score=48.05 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=19.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+|+++|+|||||+|...+|..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999988865
No 275
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.78 E-value=0.00073 Score=48.79 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998874
No 276
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.78 E-value=0.00082 Score=51.14 Aligned_cols=24 Identities=21% Similarity=0.384 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.=.++|+|++|+|||||++.|.+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 344789999999999999998886
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.78 E-value=0.00087 Score=46.73 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-++|+|.+|+|||||++++...
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 45789999999999999999874
No 278
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.78 E-value=0.00082 Score=47.78 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|+|.+||||||+++.|..
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 279
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.78 E-value=0.00075 Score=47.05 Aligned_cols=24 Identities=25% Similarity=0.534 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.++++|++|+|||||++.+.+.
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988763
No 280
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.77 E-value=0.00078 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999874
No 281
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.77 E-value=0.0025 Score=45.36 Aligned_cols=21 Identities=29% Similarity=0.627 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+++.|++|+|||+|++.+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999998876
No 282
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.77 E-value=0.00098 Score=47.33 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.|+++|++||||||+.+.|..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45799999999999999998875
No 283
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.77 E-value=0.00072 Score=50.36 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 284
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.76 E-value=0.00075 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|||||||++.+.+-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998874
No 285
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.76 E-value=0.0009 Score=47.57 Aligned_cols=21 Identities=33% Similarity=0.561 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
+|+|+|.+||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999876
No 286
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.74 E-value=0.0011 Score=46.26 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|++.|.+||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998864
No 287
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.74 E-value=0.0043 Score=47.88 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
++++.|++|+||||+++.+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999988773
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.74 E-value=0.00088 Score=49.31 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999998874
No 289
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.73 E-value=0.0012 Score=48.54 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.5
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.++|+|.|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999999998864
No 290
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.73 E-value=0.00098 Score=46.23 Aligned_cols=23 Identities=35% Similarity=0.333 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..|++.|.+||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 35899999999999999998863
No 291
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.73 E-value=0.00082 Score=49.01 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 292
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.73 E-value=0.0008 Score=49.97 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
No 293
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.72 E-value=0.0011 Score=47.00 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999998876
No 294
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.72 E-value=0.00094 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
No 295
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.72 E-value=0.0012 Score=46.35 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998865
No 296
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.72 E-value=0.00081 Score=50.21 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999999874
No 297
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.71 E-value=0.00084 Score=50.03 Aligned_cols=22 Identities=32% Similarity=0.378 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 5789999999999999998874
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.71 E-value=0.0017 Score=46.07 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998864
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.71 E-value=0.00085 Score=49.30 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 300
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.71 E-value=0.00093 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.71 E-value=0.0011 Score=46.40 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|+|.|.+||||||+++.|..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.70 E-value=0.0016 Score=49.76 Aligned_cols=25 Identities=20% Similarity=0.199 Sum_probs=22.0
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
....-|+|+|++|||||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 4567889999999999999998876
No 303
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.69 E-value=0.0011 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+++|++||||||+++.|.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 304
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.69 E-value=0.0009 Score=49.46 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998874
No 305
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.69 E-value=0.0012 Score=47.61 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 306
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.69 E-value=0.00091 Score=49.66 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 307
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.69 E-value=0.001 Score=49.67 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999984
No 308
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.67 E-value=0.00098 Score=48.14 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=-++|+|++|+|||||++.+.+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999873
No 309
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.67 E-value=0.00072 Score=48.59 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999874
No 310
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.66 E-value=0.0011 Score=47.58 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
++|+|.|.+||||||+.+.|..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3699999999999999998865
No 311
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.66 E-value=0.001 Score=49.44 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++|+|+.|+|||||++.+.+-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 36889999999999999999874
No 312
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.66 E-value=0.00088 Score=50.92 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-.++++|++|+|||||+|.+.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 357899999999999999998754
No 313
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.65 E-value=0.0013 Score=46.75 Aligned_cols=22 Identities=32% Similarity=0.379 Sum_probs=20.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.|+++|.+||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 314
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.64 E-value=0.0013 Score=45.99 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|.|.+||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999998865
No 315
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.64 E-value=0.0015 Score=46.32 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.-.|+|+|++|||||||++.|.+
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999988865
No 316
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.64 E-value=0.0012 Score=48.40 Aligned_cols=21 Identities=29% Similarity=0.691 Sum_probs=18.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHH
Q 028884 34 VKLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~ 54 (202)
=-++++|++|+|||||++.+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHH
Confidence 357899999999999999887
No 317
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.63 E-value=0.001 Score=49.83 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++|+|+.|+|||||++.+.+-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998874
No 318
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.63 E-value=0.0022 Score=43.01 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|++.|++|+|||++.+.+..
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~ 49 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHK 49 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCC
T ss_pred CCcEEEECCCCccHHHHHHHHHH
Confidence 35699999999999999987765
No 319
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.63 E-value=0.0014 Score=47.23 Aligned_cols=21 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.++|.|++|+|||+|++.+..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 320
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.63 E-value=0.0015 Score=48.03 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=21.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.....|.|+|+.|||||||++.|.+
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4456799999999999999998876
No 321
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.63 E-value=0.0011 Score=49.76 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998874
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.62 E-value=0.0015 Score=46.46 Aligned_cols=23 Identities=26% Similarity=0.264 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999875
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.62 E-value=0.0015 Score=45.78 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=20.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988864
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.62 E-value=0.0007 Score=49.27 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=15.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHH-hC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFV-RG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~-~~ 56 (202)
.--++|+|++|||||||++.|. +.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468899999999999999998 53
No 325
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.61 E-value=0.0013 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.495 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+++|.+||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998865
No 326
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.61 E-value=0.0017 Score=46.33 Aligned_cols=24 Identities=13% Similarity=0.228 Sum_probs=21.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...|+|+|.+|+|||||++.|.+.
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999874
No 327
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.61 E-value=0.0015 Score=45.48 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|++.|.+|+||||+.+.|..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 45789999999999999998874
No 328
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.61 E-value=0.0015 Score=47.56 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 329
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.60 E-value=0.0012 Score=50.21 Aligned_cols=23 Identities=48% Similarity=0.743 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-.++++|++|+|||||+|.+. ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 467899999999999999998 54
No 330
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.60 E-value=0.0011 Score=49.10 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999998874
No 331
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.60 E-value=0.00065 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++|+|++|||||||++.+.+-
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999873
No 332
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.59 E-value=0.0016 Score=46.02 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+...|+|.|.+||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999998764
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.59 E-value=0.0012 Score=51.35 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|+|+|++|||||||++.+.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999999876
No 334
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.58 E-value=0.0011 Score=49.38 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998874
No 335
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.57 E-value=0.0014 Score=47.26 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998864
No 336
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.55 E-value=0.0015 Score=45.28 Aligned_cols=21 Identities=29% Similarity=0.548 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
+|+|+|.+||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 599999999999999998865
No 337
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.54 E-value=0.0014 Score=48.81 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.++++|+.|+|||||++.+.+-.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999988743
No 338
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.54 E-value=0.0014 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.546 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999998864
No 339
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.54 E-value=0.0013 Score=51.28 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-+++|+|++|+|||||++.|.+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999874
No 340
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.54 E-value=0.0017 Score=48.99 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...-|++.|++||||||+.+.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 356799999999999999999975
No 341
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=96.51 E-value=0.0073 Score=48.34 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=19.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHH
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~ 54 (202)
.+..=|.|+|+.++|||+|+|.|+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHH
T ss_pred CceEEEEEECCCCCchhHHHHHHH
Confidence 455666699999999999999654
No 342
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.51 E-value=0.0017 Score=44.49 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
+|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 343
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.51 E-value=0.0018 Score=45.49 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998864
No 344
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.50 E-value=0.0019 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.156 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.49 E-value=0.0016 Score=47.02 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 346
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.49 E-value=0.0019 Score=44.83 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.+++.|++|+|||+|++.+...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999988764
No 347
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.49 E-value=0.0021 Score=45.55 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...|+|.|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999874
No 348
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.49 E-value=0.0019 Score=46.80 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 349
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.49 E-value=0.0016 Score=48.76 Aligned_cols=20 Identities=25% Similarity=0.498 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 028884 36 LVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~ 55 (202)
++++|++|+|||||++.+.+
T Consensus 47 vlL~Gp~GtGKTtLakala~ 66 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVAN 66 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 99999999999999999987
No 350
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.49 E-value=0.0024 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...-|+|+|.+|+|||||++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999998865
No 351
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.48 E-value=0.0028 Score=44.31 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+...|++.|.+|+||||+++.|..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 356799999999999999998865
No 352
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.48 E-value=0.0024 Score=48.25 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.....|+|+|++|||||||++.|..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999987764
No 353
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.47 E-value=0.0025 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.202 Sum_probs=21.3
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...+-|.|.|++|||||||++.|.+
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999988754
No 354
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.45 E-value=0.0018 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.|+|+|++|||||||++.+.+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34699999999999999999887
No 355
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.44 E-value=0.0011 Score=50.46 Aligned_cols=23 Identities=43% Similarity=0.548 Sum_probs=20.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++|+|+.|+|||||++.+.+-
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTS
T ss_pred CEEEEECCCCchHHHHHHHHHcC
Confidence 36899999999999999988763
No 356
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.44 E-value=0.0015 Score=50.92 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=21.0
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-.++|+|++|+|||||++.+.+-
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 47999999999999999999874
No 357
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.44 E-value=0.0019 Score=47.61 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
++++|++|+|||||++.+.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999873
No 358
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.43 E-value=0.002 Score=46.02 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998875
No 359
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.42 E-value=0.0021 Score=44.49 Aligned_cols=22 Identities=18% Similarity=0.312 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..+.|+|.+|+|||||+.+|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999986
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.41 E-value=0.0019 Score=49.16 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.|+++|+.||||||+++.+.+
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 34788999999999999998875
No 361
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.40 E-value=0.0019 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++++|+.|||||||++.+.+-
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998874
No 362
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.40 E-value=0.0018 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-++++|+.|||||||++.+.+-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999998743
No 363
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.39 E-value=0.0021 Score=47.57 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-|+|+|++|||||||.+.|..
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998865
No 364
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.39 E-value=0.0013 Score=44.67 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.-.++++|++|+|||+|++.+.+..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999988743
No 365
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.39 E-value=0.0018 Score=48.97 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 5789999999999999998874
No 366
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.39 E-value=0.0019 Score=51.37 Aligned_cols=23 Identities=22% Similarity=0.322 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.|+|+|++|||||||++.+.+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~ 190 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQE 190 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhh
Confidence 35899999999999999999874
No 367
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=96.38 E-value=0.0016 Score=47.25 Aligned_cols=25 Identities=4% Similarity=-0.052 Sum_probs=20.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+.+=|++.|.++.||++|++++++.
T Consensus 28 nkilvl~~~~~~~~~~~~~~~lf~~ 52 (233)
T 3uc9_A 28 NKILVLSDHPHNFLKTQFLQDLFHC 52 (233)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHCC
T ss_pred CceEEEecCcccccHHHHHHHHhcc
Confidence 3455555599999999999999985
No 368
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.38 E-value=0.0015 Score=50.36 Aligned_cols=24 Identities=17% Similarity=0.347 Sum_probs=21.2
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-.++|+|++|+|||||++.+.+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999998743
No 369
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.37 E-value=0.0028 Score=48.32 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
....|+|+|+.|||||||++.|.+
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998876
No 370
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.37 E-value=0.0017 Score=47.95 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.6
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.....|+++|.+||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998865
No 371
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.37 E-value=0.0021 Score=50.11 Aligned_cols=22 Identities=36% Similarity=0.489 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHHCC
Confidence 4789999999999999999874
No 372
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.35 E-value=0.0022 Score=50.05 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++++|+.|||||||++.+.+-
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCchHHHHHHHHhcC
Confidence 4789999999999999998874
No 373
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.34 E-value=0.0026 Score=44.60 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=19.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|++.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 374
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.34 E-value=0.0022 Score=50.26 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 47899999999999999998743
No 375
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.33 E-value=0.00089 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999998875
No 376
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.33 E-value=0.0024 Score=44.91 Aligned_cols=21 Identities=24% Similarity=0.321 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999998876
No 377
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.31 E-value=0.0019 Score=52.71 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=21.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-.++|+|++|||||||++.+.+-.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 459999999999999999998743
No 378
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.31 E-value=0.0026 Score=44.81 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|+|.|.+||||||+.+.|..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988865
No 379
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.30 E-value=0.0023 Score=50.06 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-++++|+.|||||||++.+.+-.
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 47899999999999999988743
No 380
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.30 E-value=0.0024 Score=49.98 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++++|+.|||||||++.+.+-
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCChHHHHHHHHHcC
Confidence 4789999999999999998874
No 381
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.30 E-value=0.0025 Score=43.86 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998865
No 382
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.30 E-value=0.0024 Score=49.74 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++++|+.|+|||||++.+.+-
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEcCCCchHHHHHHHHhcC
Confidence 4789999999999999998874
No 383
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.29 E-value=0.0025 Score=45.93 Aligned_cols=21 Identities=33% Similarity=0.681 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-++++|++|+|||||+..+.+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999999999885
No 384
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.28 E-value=0.0036 Score=43.72 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|.|.+||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998864
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.27 E-value=0.0032 Score=46.67 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=19.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5699999999999999998875
No 386
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.26 E-value=0.0033 Score=45.14 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+.|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999875
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.24 E-value=0.0028 Score=44.11 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-.+|+|+.|+|||||++.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 467999999999999998865
No 388
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.23 E-value=0.0038 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|++.|.+||||||+++.|..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45688999999999999998876
No 389
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.23 E-value=0.0028 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|++|+|||||++.+.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3899999999999999999873
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.23 E-value=0.0044 Score=47.11 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.--++++|+.|+||||+++.+.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag 122 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAH 122 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 345788999999999999998875
No 391
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.23 E-value=0.0032 Score=43.23 Aligned_cols=21 Identities=38% Similarity=0.499 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
+|+|.|.+||||||+.+.|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999988864
No 392
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.22 E-value=0.0031 Score=46.53 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHH
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~ 54 (202)
...|+|+|++||||||+++.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999887
No 393
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.22 E-value=0.0035 Score=44.35 Aligned_cols=85 Identities=13% Similarity=0.020 Sum_probs=54.4
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcC--CCCCeEEEEEeCCCCCCCCCCChH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHG--SPDIVMALVGNKADLHEKREVPAQ 160 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~p~ivv~nK~D~~~~~~~~~~ 160 (202)
+.+.++|+|+.. .......+..+|.+|+++..+... ..+...++.+.... .++.++.+|+|+.|.... ...
T Consensus 76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~~---~~~ 148 (206)
T 4dzz_A 76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD--FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMAT---MLN 148 (206)
T ss_dssp SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT--HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTEE---EEH
T ss_pred CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH--HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCch---HHH
Confidence 579999999854 233444566689999999887654 55566666665543 446678999999984221 223
Q ss_pred HHHHHHHHcCCeEE
Q 028884 161 DGIEYAEKNGMFFI 174 (202)
Q Consensus 161 ~~~~~~~~~~~~~~ 174 (202)
+..+.....+.+++
T Consensus 149 ~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 149 VLKESIKDTGVKAF 162 (206)
T ss_dssp HHHHHHHHHTCCBC
T ss_pred HHHHHHHHcCCcee
Confidence 44444455554443
No 394
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.22 E-value=0.0028 Score=44.16 Aligned_cols=21 Identities=48% Similarity=0.624 Sum_probs=18.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|+|.|.+||||||+.+.|..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999999988865
No 395
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.21 E-value=0.0019 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++++|+.|||||||++.+.+-
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTS
T ss_pred EEEEECCCCccHHHHHHHHHcC
Confidence 5789999999999999998874
No 396
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.20 E-value=0.0045 Score=45.04 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=21.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...-|+|.|.+||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4577999999999999999988763
No 397
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.20 E-value=0.0024 Score=44.22 Aligned_cols=24 Identities=42% Similarity=0.636 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.++|.|++|+|||+|++.+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 456899999999999999988763
No 398
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.20 E-value=0.0028 Score=48.85 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-.+++.|++|+|||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 45899999999999999998873
No 399
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.20 E-value=0.0041 Score=47.83 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=46.6
Q ss_pred EEEEEeCCChhhhhh-----c--ccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 84 KFEIWDTAGQERYAA-----L--APLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 84 ~~~i~D~~G~~~~~~-----~--~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
.+.++|++|...... + ....+ ..|-.+++.|..... ++...+..+.... +. -++++||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral-~~de~llvLDa~t~~---~~~~~~~~~~~~~--~i-t~iilTKlD~~a--- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVT-KPNLVIFVGDALAGN---AIVEQARQFNEAV--KI-DGIILTKLDADA--- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHH-CCSEEEEEEEGGGTT---HHHHHHHHHHHHS--CC-CEEEEECGGGCS---
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHh-cCCCCEEEEecHHHH---HHHHHHHHHHHhc--CC-CEEEEeCcCCcc---
Confidence 466799999532111 1 01111 368889999976652 2222233333221 12 477789999522
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
............+.++..++
T Consensus 283 -~~G~~l~~~~~~~~pi~~i~ 302 (328)
T 3e70_C 283 -RGGAALSISYVIDAPILFVG 302 (328)
T ss_dssp -CCHHHHHHHHHHTCCEEEEE
T ss_pred -chhHHHHHHHHHCCCEEEEe
Confidence 23345566677788877776
No 400
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.17 E-value=0.0036 Score=46.16 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..+.|+|.|.+||||||+.+.|..
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 357899999999999999998865
No 401
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.16 E-value=0.002 Score=44.75 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=15.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|.|.+||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CEEEEECCC----CHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999999999864
No 402
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.14 E-value=0.0037 Score=45.21 Aligned_cols=23 Identities=13% Similarity=0.203 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.+++.|++|+|||+|++.+..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999998876
No 403
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.13 E-value=0.003 Score=47.63 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-++|+|++|+|||||+..+.+.
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999988764
No 404
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.11 E-value=0.0031 Score=49.67 Aligned_cols=22 Identities=41% Similarity=0.684 Sum_probs=19.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|||||||++.+.+-
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCChHHHHHHHHhCC
Confidence 5789999999999999988873
No 405
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.09 E-value=0.0037 Score=44.68 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-++++|++|+|||||+..+..
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999987
No 406
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.07 E-value=0.0046 Score=45.58 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..+++.|++|+|||+|++.+.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999999998763
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.06 E-value=0.0041 Score=45.40 Aligned_cols=23 Identities=26% Similarity=0.450 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+.|+|.|++||||||+.+.|..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 57899999999999999998864
No 408
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.06 E-value=0.0032 Score=50.73 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.++|+|+.|||||||++.+.+-
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 457999999999999999998874
No 409
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.05 E-value=0.0055 Score=43.79 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.2
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|++.|.+|+||||+++.|..
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998865
No 410
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.05 E-value=0.0041 Score=45.20 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=22.2
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+..-|+|.|..|||||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34567999999999999999988774
No 411
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.04 E-value=0.0038 Score=50.58 Aligned_cols=106 Identities=12% Similarity=0.111 Sum_probs=54.8
Q ss_pred EEEEEEeCCChhhh-----hh---c---cccc-ccCccEEEEEEeCCChh-HHHHHHHHHHHHHHcCCCCCeEEEEEeCC
Q 028884 83 VKFEIWDTAGQERY-----AA---L---APLY-YRGAAVAVVVYDITSPD-SFNKAQYWVKELQKHGSPDIVMALVGNKA 149 (202)
Q Consensus 83 ~~~~i~D~~G~~~~-----~~---~---~~~~-~~~~d~~i~v~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~ 149 (202)
+.+.++||+|.... .. . .... ....+-+++++|+.... .+..++. +.... ++ -.+|+||.
T Consensus 376 ~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~----f~~~~--~i-tgvIlTKL 448 (503)
T 2yhs_A 376 IDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKL----FHEAV--GL-TGITLTKL 448 (503)
T ss_dssp CSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHH----HHHHT--CC-SEEEEECG
T ss_pred CCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHH----HHhhc--CC-CEEEEEcC
Confidence 46789999995311 11 1 1111 11246788899987652 2222222 33221 22 35678999
Q ss_pred CCCCCCCCChHHHHHHHHHcCCeEEEeccC------CCCCHHHHHHHHHHHcCCCC
Q 028884 150 DLHEKREVPAQDGIEYAEKNGMFFIETSAK------TADNINQLFEEIAKRLPRPS 199 (202)
Q Consensus 150 D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~------~~~~i~~~~~~l~~~i~~~~ 199 (202)
|... ............+.++..+..- ...+...+.+.|.....+.+
T Consensus 449 D~ta----kgG~~lsi~~~~~~PI~fig~Ge~vdDL~~f~~~~~v~~llg~~~~~~ 500 (503)
T 2yhs_A 449 DGTA----KGGVIFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFAREDHHH 500 (503)
T ss_dssp GGCS----CCTHHHHHHHHHCCCEEEEECSSSGGGEEECCHHHHHHHHHCC-----
T ss_pred CCcc----cccHHHHHHHHHCCCEEEEecCCChhhcccCCHHHHHHHHhccccccc
Confidence 9532 2334566666777776665432 22556666676665544433
No 412
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.04 E-value=0.0046 Score=43.77 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..+++.|++|+|||+|+..+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 67999999999999999988763
No 413
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.03 E-value=0.005 Score=46.25 Aligned_cols=24 Identities=38% Similarity=0.329 Sum_probs=21.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
....|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999998863
No 414
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.03 E-value=0.002 Score=50.15 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.++++|+.|||||||++.+.+-.
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 57899999999999999988743
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.03 E-value=0.0042 Score=45.16 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
--++|+|++|+|||||+..+...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 35789999999999999999874
No 416
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.98 E-value=0.0043 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.|+++|.+|+||||+.+.|..
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998865
No 417
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.97 E-value=0.0067 Score=47.24 Aligned_cols=24 Identities=17% Similarity=0.336 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.--|+++|+.|+||||+++.+.+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHh
Confidence 445788999999999999998875
No 418
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.96 E-value=0.0051 Score=41.60 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHh
Q 028884 36 LVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~ 55 (202)
.+|+|+.|+|||||++.+..
T Consensus 26 ~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 47899999999999998753
No 419
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.95 E-value=0.0053 Score=41.16 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...|++.|++|+|||++.+.+...
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHh
Confidence 456999999999999999998764
No 420
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.94 E-value=0.003 Score=48.38 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
--++|+|..|+|||||++.+.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 346799999999999999999753
No 421
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.92 E-value=0.003 Score=46.86 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+...|+|.|..||||||+++.|..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999988875
No 422
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.91 E-value=0.0049 Score=46.53 Aligned_cols=22 Identities=27% Similarity=0.443 Sum_probs=19.8
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|++.|.+||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999876
No 423
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=95.84 E-value=0.0054 Score=47.54 Aligned_cols=26 Identities=27% Similarity=0.486 Sum_probs=22.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
+.=+++++|+.|+|||||++.+.+..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34478999999999999999999853
No 424
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.81 E-value=0.0072 Score=45.66 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=20.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
....+++.|++|+|||++++.+..
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~ 89 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAG 89 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999986554
No 425
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.80 E-value=0.0062 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.609 Sum_probs=19.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999988763
No 426
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.79 E-value=0.0056 Score=47.98 Aligned_cols=24 Identities=13% Similarity=0.235 Sum_probs=20.9
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.-.++++|++|+|||||++.+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 344789999999999999999886
No 427
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.78 E-value=0.0064 Score=45.94 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=21.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
....+++.|+||+|||+|++.+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467788899999999999988763
No 428
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.76 E-value=0.0068 Score=45.27 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...+++.|++|+|||+|++.+...
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 456999999999999999999763
No 429
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.74 E-value=0.0077 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|++.|++|+|||+|++.+..
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999876
No 430
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.73 E-value=0.0094 Score=44.29 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.7
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.....+++.|++|+|||+|++.+...
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45678999999999999999998763
No 431
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.72 E-value=0.0071 Score=45.50 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...+++.|++|+|||+|++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 46799999999999999999986
No 432
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.72 E-value=0.006 Score=45.62 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.=-++|+|++|+|||||+..+..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34588999999999999998876
No 433
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.72 E-value=0.0053 Score=43.85 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=19.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
-.+++.|+||+|||+++..+..
T Consensus 59 n~ili~GPPGtGKTt~a~ala~ 80 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIH 80 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3599999999999999888766
No 434
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.69 E-value=0.01 Score=44.82 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.+++.|++|+|||++++.+...
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~ 70 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAAT 70 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHH
Confidence 457999999999999999988763
No 435
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.67 E-value=0.0081 Score=42.47 Aligned_cols=23 Identities=22% Similarity=0.326 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...|.+.|.+||||||+.+.|..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56799999999999999988865
No 436
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.66 E-value=0.0068 Score=49.04 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=19.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
=.++|+|+.|+|||||++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~G 51 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVT 51 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhc
Confidence 3578999999999999998876
No 437
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.64 E-value=0.0074 Score=49.63 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=22.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
+.=.++++|+.|+|||||++.+.+-.
T Consensus 46 ~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 46 EGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34468999999999999999998743
No 438
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.63 E-value=0.009 Score=43.49 Aligned_cols=25 Identities=16% Similarity=0.298 Sum_probs=21.4
Q ss_pred CceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 31 NLRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 31 ~~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.....|+|+|.+|+||||+.+.|..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999988875
No 439
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=95.60 E-value=0.0074 Score=48.31 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=22.1
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
+.=+++++|+.|+|||||++.+.+..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34478999999999999999998853
No 440
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.54 E-value=0.0098 Score=43.28 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.+++.|+|.|||||||+...|..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHH
Confidence 47899999999999999988854
No 441
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.52 E-value=0.007 Score=50.24 Aligned_cols=23 Identities=39% Similarity=0.465 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 36899999999999999998874
No 442
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.51 E-value=0.0095 Score=45.10 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.0
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-.|++.|++|+|||+|++.+...
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 456999999999999999998863
No 443
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.50 E-value=0.0081 Score=49.87 Aligned_cols=23 Identities=43% Similarity=0.538 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999998874
No 444
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.49 E-value=0.0084 Score=45.79 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.4
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.+++.|++|+|||+|++.+..
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~ 59 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGN 59 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999999998876
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.48 E-value=0.029 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=20.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...-|+++|.+||||||+.+.|..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 345688999999999999999876
No 446
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.47 E-value=0.0083 Score=45.44 Aligned_cols=85 Identities=12% Similarity=0.046 Sum_probs=46.6
Q ss_pred EEEEEEeCCChhhhhh--c--cccccc--CccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCC
Q 028884 83 VKFEIWDTAGQERYAA--L--APLYYR--GAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE 156 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~--~--~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~ 156 (202)
..+.++||+|...... + ....+. ..+.+++|+|.+.. ...+..+...+.. .+. .-+|+||.|....
T Consensus 183 ~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~~~~~~~~~~---l~~-~giVltk~D~~~~-- 254 (296)
T 2px0_A 183 YDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDMKHIVKRFSS---VPV-NQYIFTKIDETTS-- 254 (296)
T ss_dssp SSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHHHHHTTTTSS---SCC-CEEEEECTTTCSC--
T ss_pred CCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHHHHHHHHHhc---CCC-CEEEEeCCCcccc--
Confidence 4789999999653221 1 111222 35778889987754 2333333332221 111 3456799996432
Q ss_pred CChHHHHHHHHHcCCeEEEec
Q 028884 157 VPAQDGIEYAEKNGMFFIETS 177 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~s 177 (202)
...........+.++..+.
T Consensus 255 --~g~~~~~~~~~~~pi~~i~ 273 (296)
T 2px0_A 255 --LGSVFNILAESKIGVGFMT 273 (296)
T ss_dssp --CHHHHHHHHTCSCCCSEEC
T ss_pred --hhHHHHHHHHHCcCEEEEE
Confidence 2355666667777765543
No 447
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.45 E-value=0.0088 Score=43.48 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-++|+|++|+|||||+..+..
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999877754
No 448
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.44 E-value=0.0047 Score=49.74 Aligned_cols=21 Identities=14% Similarity=0.398 Sum_probs=18.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.++|.|.+|+|||+++..+..
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~ 67 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIE 67 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHH
Confidence 799999999999999987764
No 449
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.42 E-value=0.0099 Score=41.55 Aligned_cols=21 Identities=19% Similarity=0.310 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
|+|+|.++||||+|..+|...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 789999999999999999864
No 450
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.42 E-value=0.008 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-++++|+.|+|||||++.+.+..
T Consensus 27 i~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 27 ILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 57899999999999999998743
No 451
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.41 E-value=0.0094 Score=46.53 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=18.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHH
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~ 54 (202)
.+ .+|+|+.|+|||||++.+.
T Consensus 24 g~-~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 24 GI-TVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EE-EEEECCTTSSHHHHHHHHH
T ss_pred Ce-EEEECCCCCCHHHHHHHHH
Confidence 45 4589999999999999876
No 452
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.41 E-value=0.0087 Score=46.41 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.++|.|++|+|||||++.+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999998876
No 453
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.39 E-value=0.011 Score=41.72 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
.|.|.|.+||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998865
No 454
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.39 E-value=0.011 Score=44.62 Aligned_cols=23 Identities=30% Similarity=0.660 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
...+++.|++|+|||++++.+..
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999998876
No 455
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.0093 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
=.++++|+.|+|||||++.+.+-.
T Consensus 104 ei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 104 QVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHhcCC
Confidence 368899999999999999998743
No 456
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.39 E-value=0.01 Score=45.17 Aligned_cols=86 Identities=16% Similarity=0.072 Sum_probs=47.3
Q ss_pred EEEEEEeCCChhhhh--------hc---ccc-cccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCC
Q 028884 83 VKFEIWDTAGQERYA--------AL---APL-YYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKAD 150 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~--------~~---~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D 150 (202)
..+.++|+||..... .. ... .....|.+++|+|.... ...+... ..+.... ++ .-+|+||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a-~~~~~~~--~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQA-KIFKEAV--NV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHH-HHHHHHS--CC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHH-HHHHhcC--CC-CEEEEeCCC
Confidence 468999999952211 11 111 12347889999998744 2222221 2222221 22 456679999
Q ss_pred CCCCCCCChHHHHHHHHHcCCeEEEecc
Q 028884 151 LHEKREVPAQDGIEYAEKNGMFFIETSA 178 (202)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 178 (202)
... ....+.......+.|+.++..
T Consensus 261 ~~~----~gG~~l~~~~~~~~Pi~~i~~ 284 (306)
T 1vma_A 261 GTA----KGGITLAIARELGIPIKFIGV 284 (306)
T ss_dssp GCS----CTTHHHHHHHHHCCCEEEEEC
T ss_pred Ccc----chHHHHHHHHHHCCCEEEEeC
Confidence 532 223466777778888776653
No 457
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.38 E-value=0.0091 Score=46.31 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+.--+.|+|++|+|||||+..+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3446789999999999999999874
No 458
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.37 E-value=0.011 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++|.|++|+|||+|++.+...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999998864
No 459
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.36 E-value=0.01 Score=42.20 Aligned_cols=24 Identities=42% Similarity=0.654 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...|+|+|++|+|||+|...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999864
No 460
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.33 E-value=0.0069 Score=46.60 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
-+++.|++|+|||++++.+...-
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCchHHHHHHHHHHHH
Confidence 48999999999999999887643
No 461
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.32 E-value=0.011 Score=48.60 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.++|+|+.|+|||||++.+.+-.
T Consensus 314 ~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998843
No 462
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.30 E-value=0.013 Score=44.73 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.3
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+...|++.|++|+|||+|++.+..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 346799999999999999999876
No 463
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.27 E-value=0.03 Score=40.51 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=17.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..-+++.|++|+||||++-++..
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHH
Confidence 34567889999999998865553
No 464
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.26 E-value=0.017 Score=44.85 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=19.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..+|+++|++|+||||+.+.|..
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHH
Confidence 46899999999999999986654
No 465
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=95.25 E-value=0.081 Score=38.31 Aligned_cols=86 Identities=14% Similarity=0.105 Sum_probs=55.8
Q ss_pred EEEEEEeCCChhhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHHH
Q 028884 83 VKFEIWDTAGQERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDG 162 (202)
Q Consensus 83 ~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~ 162 (202)
+.+.++|+|+.. .......+..+|.+|+++..+ ..+...+..+++.+.....+...+.+|+|+.+... ....
T Consensus 119 yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~--- 190 (245)
T 3ea0_A 119 YDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITS--- 190 (245)
T ss_dssp CSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCH---
T ss_pred CCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCH---
Confidence 578999998753 223444567799999998875 44567777777777765444456889999998432 2222
Q ss_pred HHHHHHcCCeEEEe
Q 028884 163 IEYAEKNGMFFIET 176 (202)
Q Consensus 163 ~~~~~~~~~~~~~~ 176 (202)
..+....+.+++..
T Consensus 191 ~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 191 DEIEKVIGRPISKR 204 (245)
T ss_dssp HHHHHHHTSCEEEE
T ss_pred HHHHHHhCCCeEEE
Confidence 23334456665544
No 466
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.23 E-value=0.0099 Score=48.85 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.++|+|+.|+|||||++.+.+-.
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46899999999999999998743
No 467
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.23 E-value=0.014 Score=44.68 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
+.-.|++.|++|+|||+|++.+...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999863
No 468
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.23 E-value=0.012 Score=45.01 Aligned_cols=22 Identities=18% Similarity=0.463 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|+|+|++|||||||...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999998875
No 469
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.22 E-value=0.012 Score=49.05 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHhCC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
.++|+|+.|+|||||++.+.+..
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998843
No 470
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.20 E-value=0.18 Score=38.19 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=16.9
Q ss_pred EEEEcCCCCcHHHHHHHHHhC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~ 56 (202)
+++-|++|+|||++++.+...
T Consensus 51 ~L~~G~~G~GKT~la~~la~~ 71 (324)
T 3u61_B 51 ILHSPSPGTGKTTVAKALCHD 71 (324)
T ss_dssp EEECSSTTSSHHHHHHHHHHH
T ss_pred EEeeCcCCCCHHHHHHHHHHH
Confidence 455566999999999999763
No 471
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.18 E-value=0.011 Score=49.25 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=21.8
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhCC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~~ 57 (202)
+.=.++++|+.|+|||||++.+.+..
T Consensus 116 ~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 116 DGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34468999999999999999998743
No 472
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.15 E-value=0.0073 Score=50.27 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.++++|+.|+|||||++.+.+-
T Consensus 372 ~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 372 VTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp EEEEECCTTSSSTHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998874
No 473
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.14 E-value=0.014 Score=41.52 Aligned_cols=20 Identities=25% Similarity=0.521 Sum_probs=17.0
Q ss_pred eEEEEcCCCCcHHHHHHHHH
Q 028884 35 KLVLLGDSGVGKSCIVLRFV 54 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~ 54 (202)
-.+|+|+.|+|||||++.+.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 34688999999999998775
No 474
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.14 E-value=0.0079 Score=50.11 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=20.9
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.=.++++|+.|+|||||++.+.+-
T Consensus 381 G~~~~ivG~sGsGKSTll~~l~g~ 404 (598)
T 3qf4_B 381 GQKVALVGPTGSGKTTIVNLLMRF 404 (598)
T ss_dssp TCEEEEECCTTSSTTHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 347899999999999999988873
No 475
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.13 E-value=0.013 Score=45.14 Aligned_cols=22 Identities=18% Similarity=0.484 Sum_probs=19.6
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-|+|.|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4689999999999999998875
No 476
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.11 E-value=0.013 Score=45.08 Aligned_cols=22 Identities=27% Similarity=0.643 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
++++.|++|+||||+++.+.+.
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988764
No 477
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.05 E-value=0.016 Score=44.19 Aligned_cols=22 Identities=18% Similarity=0.403 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-|+|+|++|||||+|...|...
T Consensus 5 ~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHh
Confidence 4789999999999999999763
No 478
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.03 E-value=0.0071 Score=50.17 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=20.3
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.=.++++|+.|+|||||++.+.+-
T Consensus 367 G~~~~ivG~sGsGKSTll~~l~g~ 390 (578)
T 4a82_A 367 GETVAFVGMSGGGKSTLINLIPRF 390 (578)
T ss_dssp TCEEEEECSTTSSHHHHHTTTTTS
T ss_pred CCEEEEECCCCChHHHHHHHHhcC
Confidence 346889999999999999887763
No 479
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.02 E-value=0.018 Score=41.99 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=20.4
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..|+|-|..|+||||+++.|...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 56899999999999999988763
No 480
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.01 E-value=0.014 Score=44.94 Aligned_cols=23 Identities=35% Similarity=0.566 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-|+|+|++|+|||+|...|...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999998763
No 481
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.014 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.640 Sum_probs=19.8
Q ss_pred EEEEcCCCCcHHHHHHHHHhCC
Q 028884 36 LVLLGDSGVGKSCIVLRFVRGQ 57 (202)
Q Consensus 36 i~v~G~~~~GKSsli~~l~~~~ 57 (202)
++++|+.|+|||||++.+.+-.
T Consensus 381 v~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhcCC
Confidence 6899999999999999998744
No 482
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.018 Score=45.97 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.6
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
+.-.|++.|+||+|||+|++.+.+
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHHHHHH
Confidence 456799999999999999999987
No 483
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.99 E-value=0.018 Score=44.15 Aligned_cols=24 Identities=17% Similarity=0.295 Sum_probs=20.8
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...|++.|++|+|||+|++.+...
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~ 78 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYE 78 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 346999999999999999999663
No 484
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.99 E-value=0.013 Score=45.53 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.++|.|++|+|||+|++.+..
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~ 66 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLR 66 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999998876
No 485
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.98 E-value=0.009 Score=49.67 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.1
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
=.++++|+.|+|||||++.+.+-
T Consensus 370 e~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSSHHHHHHTTTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999988763
No 486
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.97 E-value=0.016 Score=44.36 Aligned_cols=23 Identities=35% Similarity=0.462 Sum_probs=20.3
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-.++|.|+.|+|||||++.+...
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 36889999999999999999864
No 487
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.94 E-value=0.016 Score=44.57 Aligned_cols=22 Identities=23% Similarity=0.626 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
++++.|++|+|||++++.+...
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999988763
No 488
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.93 E-value=0.018 Score=43.84 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.5
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.-.+++.|++|+|||+|+..+..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~ 174 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAH 174 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999988775
No 489
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.93 E-value=0.016 Score=44.90 Aligned_cols=23 Identities=22% Similarity=0.562 Sum_probs=20.5
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
-.+++.|++|+|||+|++.+...
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999988763
No 490
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=94.93 E-value=0.052 Score=38.68 Aligned_cols=85 Identities=12% Similarity=0.083 Sum_probs=53.2
Q ss_pred EEEEEEeCCCh-hhhhhcccccccCccEEEEEEeCCChhHHHHHHHHHHHHHHcCCCCCeEEEEEeCCCCCCCCCCChHH
Q 028884 83 VKFEIWDTAGQ-ERYAALAPLYYRGAAVAVVVYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQD 161 (202)
Q Consensus 83 ~~~~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~D~~~~~~~~~~~ 161 (202)
+.+.++|+|+. .. ......+..+|.+|++...+. .+...+...++.+.... +.++.+|+|+.+.... ....+
T Consensus 68 yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~~-~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~--~~~~~ 140 (209)
T 3cwq_A 68 YQNIVIDTQARPED--EDLEALADGCDLLVIPSTPDA-LALDALMLTIETLQKLG--NNRFRILLTIIPPYPS--KDGDE 140 (209)
T ss_dssp CSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSSH-HHHHHHHHHHHHHHHTC--SSSEEEEECSBCCTTS--CHHHH
T ss_pred CCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCCc-hhHHHHHHHHHHHHhcc--CCCEEEEEEecCCccc--hHHHH
Confidence 57999999875 32 223345667899999988764 34666666666666542 4568899999984320 11334
Q ss_pred HHHHHHHcCCeEE
Q 028884 162 GIEYAEKNGMFFI 174 (202)
Q Consensus 162 ~~~~~~~~~~~~~ 174 (202)
..+..+..+.+++
T Consensus 141 ~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 141 ARQLLTTAGLPLF 153 (209)
T ss_dssp HHHHHHHTTCCBC
T ss_pred HHHHHHHcCCchh
Confidence 4444444554433
No 491
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.91 E-value=0.019 Score=45.69 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHh
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
.--|++.|+||+|||+|++.+.+
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 44699999999999999999886
No 492
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=94.91 E-value=0.0071 Score=44.78 Aligned_cols=22 Identities=23% Similarity=0.450 Sum_probs=19.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHhC
Q 028884 35 KLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.+++.|++|+|||+|++.+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4889999999999999988763
No 493
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.89 E-value=0.016 Score=45.54 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=22.0
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..-+++|+|++|+|||++++.+...
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4568999999999999999988864
No 494
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=94.87 E-value=0.019 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.569 Sum_probs=21.1
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
...+++.|++|+|||++++.+...
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999988763
No 495
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=94.86 E-value=0.015 Score=46.95 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=20.6
Q ss_pred eeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 33 RVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 33 ~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
.-++++.|++|+|||++++.+...
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~ 224 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQ 224 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999988753
No 496
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.85 E-value=0.016 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.265 Sum_probs=18.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHh
Q 028884 35 KLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 35 ~i~v~G~~~~GKSsli~~l~~ 55 (202)
-++|+|++|+|||||+..+..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHH
Confidence 588999999999999998763
No 497
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.84 E-value=0.019 Score=41.08 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.7
Q ss_pred eeEEEEcCCCCcHHHHHHHHHh
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~ 55 (202)
..|++.|.+||||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999988765
No 498
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.82 E-value=0.019 Score=42.43 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.9
Q ss_pred eeEEEEcCCCCcHHHHHHHHHhC
Q 028884 34 VKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 34 ~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..|++.|++|+|||+|++.+...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHT
T ss_pred CCEEEECCCCCcHHHHHHHHHHh
Confidence 57999999999999999999874
No 499
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.82 E-value=0.015 Score=44.53 Aligned_cols=25 Identities=8% Similarity=-0.032 Sum_probs=21.7
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHhC
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVRG 56 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~~ 56 (202)
..-.++|.|+||+|||++++.+...
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~ 68 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDE 68 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4568899999999999999988764
No 500
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=94.81 E-value=0.021 Score=44.37 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.2
Q ss_pred ceeeEEEEcCCCCcHHHHHHHHHh
Q 028884 32 LRVKLVLLGDSGVGKSCIVLRFVR 55 (202)
Q Consensus 32 ~~~~i~v~G~~~~GKSsli~~l~~ 55 (202)
....|++.|++|+|||+|++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999976
Done!