BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028885
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1J1I|A Chain A, Crystal Structure Of A His-Tagged Serine Hydrolase
Involved In The Carbazole Degradation (Carc Enzyme)
Length = 296
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 11/104 (10%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD-QAFFICN 60
+LA+ +RV ++D++G+G + KP+ YT + L+DF K + D + + N
Sbjct: 61 ILARHYRVIAMDMLGFGKTAKPDIE-------YTQDRRIRHLHDFIKAMNFDGKVSIVGN 113
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLI 104
S+GG GL +V+ E+ ++L+ + ++ I + RP+I
Sbjct: 114 SMGGATGLGVSVLHSELVNALVLMGSAGLVVEIHEDL---RPII 154
>pdb|2XT0|A Chain A, Dehalogenase Dppa From Plesiocystis Pacifica Sir-I
Length = 297
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
A RV + DL G+G SDKP D YTF L F + ++ +C G
Sbjct: 71 AAGGRVVAPDLFGFGRSDKPT-----DDAVYTFGFHRRSLLAFLDALQLERVTLVCQDWG 125
Query: 64 GLVGLQAAVMEPEICRGMILLNISL 88
G++GL V P++ +I++N +L
Sbjct: 126 GILGLTLPVDRPQLVDRLIVMNTAL 150
>pdb|1IUN|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUN|B Chain B, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Hexagonal
pdb|1IUO|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Acetates
pdb|1IUP|A Chain A, Meta-Cleavage Product Hydrolase From Pseudomonas
Fluorescens Ip01 (Cumd) S103a Mutant Complexed With
Isobutyrates
pdb|1UK6|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Propionate
pdb|1UK7|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With N-Butyrate
pdb|1UK8|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With N-valerate
pdb|1UK9|A Chain A, Crystal Structure Of A Meta-cleavage Product Hydrolase
(cumd) Complexed With Isovalerate
pdb|1UKA|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With (S)-2-Methylbutyrate
pdb|1UKB|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) Complexed With Benzoate
Length = 282
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 72/170 (42%), Gaps = 30/170 (17%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
L+K +RV + D++G+G++D+P + Y+ ++W + + ++A + N+
Sbjct: 50 ALSKFYRVIAPDMVGFGFTDRPENYN------YSKDSWVDHIIGIMDALEIEKAHIVGNA 103
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFY 121
GG + + A+ E M+L+ + + T +
Sbjct: 104 FGGGLAIATALRYSERVDRMVLMGAAGTRFDV--------------------TEGLNAVW 143
Query: 122 KMVATSESVRNILCQCYNDTSQVTEELV----EKILQPGLETGAADVFLE 167
+ E++RN+L D S VT+EL E +QPG + + +F E
Sbjct: 144 GYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPE 193
>pdb|2D0D|A Chain A, Crystal Structure Of A Meta-Cleavage Product Hydrolase
(Cumd) A129v Mutant
Length = 282
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 71/170 (41%), Gaps = 30/170 (17%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
L+K +RV + D++G+G++D+P + Y+ ++W + + ++A + NS
Sbjct: 50 ALSKFYRVIAPDMVGFGFTDRPENYN------YSKDSWVDHIIGIMDALEIEKAHIVGNS 103
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFY 121
GG + + A+ E M+L+ + T +
Sbjct: 104 FGGGLAIATALRYSERVDRMVLMGAVGTRFDV--------------------TEGLNAVW 143
Query: 122 KMVATSESVRNILCQCYNDTSQVTEELV----EKILQPGLETGAADVFLE 167
+ E++RN+L D S VT+EL E +QPG + + +F E
Sbjct: 144 GYTPSIENMRNLLDIFAYDRSLVTDELARLRYEASIQPGFQESFSSMFPE 193
>pdb|1WOM|A Chain A, Crystal Structure Of Rsbq
pdb|1WOM|B Chain B, Crystal Structure Of Rsbq
pdb|1WPR|A Chain A, Crystal Structure Of Rsbq Inhibited By Pmsf
pdb|1WPR|B Chain B, Crystal Structure Of Rsbq Inhibited By Pmsf
Length = 271
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGG 64
+ HRV D +G G+SD R + + T + +A + D C+ + + F+ +S+G
Sbjct: 45 EDHRVILFDYVGSGHSDL---RAYDLNRYQTLDGYAQDVLDVCEALDLKETVFVGHSVGA 101
Query: 65 LVGLQAAVMEPEICRGMILLNIS 87
L+G+ A++ PE+ ++++ S
Sbjct: 102 LIGMLASIRRPELFSHLVMVGPS 124
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + + P + R L ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARELFQAFRT 154
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + V ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEAVGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRT 154
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRT 154
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRT 154
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 49/107 (45%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 52 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 104
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + + P + R ++F+
Sbjct: 105 GSALGFHWAKRNPERVKGIACMEFIRPIPTWDEWPEFARETFQAFRT 151
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 108 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 154
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 52 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 104
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQN 109
G +G A PE +G+ + + P + R ++F+
Sbjct: 105 GSALGFHWAKRNPERVKGIACMEFIRPFPTWDEWPEFARETFQAFRT 151
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGM 81
G +G A PE +G+
Sbjct: 108 GSALGFHWAKRNPERVKGI 126
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
+A SHR + DLIG G SDKP+ D+F F+ L+ F + + ++ + +
Sbjct: 55 VAPSHRCIAPDLIGMGKSDKPD-LDYF------FDDHVRYLDAFIEALGLEEVVLVIHDW 107
Query: 63 GGLVGLQAAVMEPEICRGM 81
G +G A PE +G+
Sbjct: 108 GSALGFHWAKRNPERVKGI 126
>pdb|4DNP|A Chain A, Crystal Structure Of Dad2
Length = 269
Score = 35.4 bits (80), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 5 KSHRVYSIDLIGYGYSDKPNPRDFFD-KPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
+ +RV DL+ G NP DFFD + + T + + L + D ++ +S+
Sbjct: 45 RDYRVVLYDLVCAG---SVNP-DFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHSVS 100
Query: 64 GLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ PE+ +IL+ S R L+
Sbjct: 101 AMIGILASIRRPELFSKLILIGASPRFLN 129
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66
+RV ++D+ GYG S P + Y E ++ F + QA FI + GG++
Sbjct: 286 YRVLAMDMKGYGESSAPP-----EIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGML 340
Query: 67 GLQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 341 VWYMALFYPERVRAVASLN 359
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66
+RV ++D+ GYG S P + Y E ++ F + QA FI + GG++
Sbjct: 67 YRVLAMDMKGYGESSAPP-----EIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGML 121
Query: 67 GLQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 122 VWYMALFYPERVRAVASLN 140
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLV 66
+RV ++D+ GYG S P + Y E ++ F + QA FI + GG++
Sbjct: 82 YRVLAMDMKGYGESSAPP-----EIEEYCMEVLCKEMVTFLDKLGLSQAVFIGHDWGGML 136
Query: 67 GLQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 137 VWYMALFYPERVRAVASLN 155
>pdb|1B6G|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Chloride
Length = 310
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNAXL 151
>pdb|3BF7|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF7|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 8/94 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L H + +D+ +G S PR +P + A L D + D+A FI +S+
Sbjct: 39 LVNDHNIIQVDVRNHGLS----PR----EPVMNYPAMAQDLVDTLDALQIDKATFIGHSM 90
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQ 96
GG + + P+ ++ ++I+ H+++
Sbjct: 91 GGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRH 124
>pdb|3B12|A Chain A, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
pdb|3B12|B Chain B, Crystal Structure Of The Fluoroacetate Dehalogenase D104
Mutant From Burkholderia Sp. Fa1 In Complex With
Fluoroacetate
Length = 304
Score = 34.7 bits (78), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+LA + V DL GYG S KP D Y+F AS + + + ++ + ++
Sbjct: 47 LLANEYTVVCADLRGYGGSSKPVGAP--DHANYSFRAMASDQRELMRTLGFERFHLVGHA 104
Query: 62 IGGLVGLQAAVMEPEICRGMILLNI 86
GG G + A+ P+ + +L+I
Sbjct: 105 RGGRTGHRMALDHPDSVLSLAVLDI 129
>pdb|1BEE|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr
pdb|1BEZ|A Chain A, Haloalkane Dehalogenase Mutant With Trp 175 Replaced By
Tyr At Ph 5
Length = 310
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1CIJ|A Chain A, Haloalkane Dehalogenase Soaked With High Concentration Of
Bromide
pdb|1BE0|A Chain A, Haloalkane Dehalogenase At Ph 5.0 Containing Acetic Acid
Length = 310
Score = 34.7 bits (78), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1EDB|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDD|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|1EDE|A Chain A, Refined X-Ray Structures Of Haloalkane Dehalogenase At Ph
6.2 And Ph 8.2 And Implications For The Reaction
Mechanism
pdb|2DHC|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2DHE|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
pdb|2EDA|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2EDC|A Chain A, Crystallographic And Fluorescence Studies Of The
Interaction Of Haloalkane Dehalogenase With Halide Ions:
Studies With Halide Compounds Reveal A Halide Binding
Site In The Active Site
pdb|2HAD|A Chain A, Crystal Structure Of Haloalkane Dehalogenase: An Enzyme To
Detoxify Halogenated Alkanes
pdb|2PKY|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
pdb|2YXP|X Chain X, The Effect Of Deuteration On Protein Structure A High
Resolution Comparison Of Hydrogenous And Perdeuterated
Haloalkane Dehalogenase
Length = 310
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|1HDE|A Chain A, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
pdb|1HDE|B Chain B, Haloalkane Dehalogenase Mutant With Phe 172 Replaced With
Trp
Length = 310
Score = 34.7 bits (78), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 DWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/77 (20%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 11 SIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70
++D G+G SDKP + Y +A + + + + A + +S+G + A
Sbjct: 99 AVDQRGHGLSDKP-------ETGYEANDYADDIAGLIRTLARGHAILVGHSLGARNSVTA 151
Query: 71 AVMEPEICRGMILLNIS 87
A P++ R ++ ++ +
Sbjct: 152 AAKYPDLVRSVVAIDFT 168
>pdb|4DNQ|A Chain A, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|B Chain B, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|C Chain C, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|D Chain D, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|E Chain E, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|F Chain F, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|G Chain G, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|H Chain H, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|I Chain I, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|J Chain J, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|K Chain K, Crystal Structure Of Dad2 S96a Mutant
pdb|4DNQ|L Chain L, Crystal Structure Of Dad2 S96a Mutant
Length = 269
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 5 KSHRVYSIDLIGYGYSDKPNPRDFFD-KPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
+ +RV DL+ G NP DFFD + + T + + L + D ++ +++
Sbjct: 45 RDYRVVLYDLVCAG---SVNP-DFFDFRRYTTLDPYVDDLLHILDALGIDCCAYVGHAVS 100
Query: 64 GLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ PE+ +IL+ S R L+
Sbjct: 101 AMIGILASIRRPELFSKLILIGASPRFLN 129
>pdb|2DHD|A Chain A, Crystallographic Analysis Of The Catalytic Mechanism Of
Haloalkane Dehalogenase
Length = 310
Score = 34.7 bits (78), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
V A+S RV + D G+G SDKP D+ YTFE + L + + +
Sbjct: 69 VFAESGARVIAPDFFGFGKSDKP-----VDEEDYTFEFHRNFLLALIERLDLRNITLVVQ 123
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNISL 88
GG +GL + +P + +I++N L
Sbjct: 124 XWGGFLGLTLPMADPSRFKRLIIMNACL 151
>pdb|4IH1|A Chain A, Crystal Structure Of Karrikin Insensitive 2 (kai2) From
Arabidopsis Thaliana
Length = 270
Score = 34.3 bits (77), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT-FETWASQLNDFCKDVVKDQAFFICNS 61
L +RV D +G G + NP D+FD Y+ E ++ L +D+ + F+ +S
Sbjct: 40 LVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHS 95
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH-IKKQPWYGRP-LIRSFQNLLRNTAAGKL 119
+ ++G+ A++ P++ +++++ S R ++ + Q + + L + F+ + N A L
Sbjct: 96 VSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCL 155
Query: 120 FYKMVATSESVRNILCQCYNDT 141
+ +A + +I Q ++ T
Sbjct: 156 GFAPLAVGGDMDSIAVQEFSRT 177
>pdb|3W06|A Chain A, Crystal Structure Of Arabidopsis Thaliana Dwarf14 Like
(atd14l)
Length = 272
Score = 34.3 bits (77), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT-FETWASQLNDFCKDVVKDQAFFICNS 61
L +RV D +G G + NP D+FD Y+ E ++ L +D+ + F+ +S
Sbjct: 42 LVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHS 97
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH-IKKQPWYGRP-LIRSFQNLLRNTAAGKL 119
+ ++G+ A++ P++ +++++ S R ++ + Q + + L + F+ + N A L
Sbjct: 98 VSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCL 157
Query: 120 FYKMVATSESVRNILCQCYNDT 141
+ +A + +I Q ++ T
Sbjct: 158 GFAPLAVGGDMDSIAVQEFSRT 179
>pdb|4HRX|A Chain A, Crystal Structure Of Kai2
pdb|4HRY|A Chain A, The Structure Of Arabidopsis Thaliana Kai2
pdb|4HTA|A Chain A, The Structure Of The Karrikin Insensitive (kai2) Protein
In Arabidopsis Thaliana
Length = 288
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 71/142 (50%), Gaps = 7/142 (4%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT-FETWASQLNDFCKDVVKDQAFFICNS 61
L +RV D +G G + NP D+FD Y+ E ++ L +D+ + F+ +S
Sbjct: 58 LVDDYRVVLYDNMGAGTT---NP-DYFDFDRYSNLEGYSFDLIAILEDLKIESCIFVGHS 113
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH-IKKQPWYGRP-LIRSFQNLLRNTAAGKL 119
+ ++G+ A++ P++ +++++ S R ++ + Q + + L + F+ + N A L
Sbjct: 114 VSAMIGVLASLNRPDLFSKIVMISASPRYVNDVDYQGGFEQEDLNQLFEAIRSNYKAWCL 173
Query: 120 FYKMVATSESVRNILCQCYNDT 141
+ +A + +I Q ++ T
Sbjct: 174 GFAPLAVGGDMDSIAVQEFSRT 195
>pdb|3W04|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W04|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14)
pdb|3W05|A Chain A, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
pdb|3W05|B Chain B, Crystal Structure Of Oryza Sativa Dwarf14 (d14) In Complex
With Pmsf
Length = 266
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L + HRV DL+ G NP F + + + + L + + F+ +S+
Sbjct: 40 LTRDHRVVLYDLVCAG---SVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSV 96
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ P++ ++L+ S R L+
Sbjct: 97 SAMIGILASIRRPDLFAKLVLIGASPRFLN 126
>pdb|4IHA|A Chain A, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IHA|B Chain B, Crystal Structure Of Rice Dwarf14 (d14) In Complex With A
Gr24 Hydrolysis Intermediate
pdb|4IH9|A Chain A, Crystal Structure Of Rice Dwarf14 (d14)
pdb|4IH9|B Chain B, Crystal Structure Of Rice Dwarf14 (d14)
Length = 268
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L + HRV DL+ G NP F + + + + L + + F+ +S+
Sbjct: 42 LTRDHRVVLYDLVCAG---SVNPDHFDFRRYDNLDAYVDDLLAILDALRIPRCAFVGHSV 98
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLH 92
++G+ A++ P++ ++L+ S R L+
Sbjct: 99 SAMIGILASIRRPDLFAKLVLIGASPRFLN 128
>pdb|1Y37|A Chain A, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
pdb|1Y37|B Chain B, Structure Of Fluoroacetate Dehalogenase From Burkholderia
Sp. Fa1
Length = 304
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+LA + V DL GYG S KP D Y+F AS + + + ++ + +
Sbjct: 47 LLANEYTVVCADLRGYGGSSKPVGAP--DHANYSFRAMASDQRELMRTLGFERFHLVGHD 104
Query: 62 IGGLVGLQAAVMEPEICRGMILLNI 86
GG G + A+ P+ + +L+I
Sbjct: 105 RGGRTGHRMALDHPDSVLSLAVLDI 129
>pdb|4IH4|A Chain A, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|B Chain B, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|C Chain C, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
pdb|4IH4|D Chain D, Crystal Structure Of Arabidopsis Dwarf14 Orthologue, Atd14
Length = 267
Score = 33.9 bits (76), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFD-KPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+++RV DL+ G NP D+FD + T + + L + + ++ +S
Sbjct: 42 FTQNYRVVLYDLVCAG---SVNP-DYFDFNRYTTLDPYVDDLLNIVDSLGIQNCAYVGHS 97
Query: 62 IGGLVGLQAAVMEPEICRGMILLNISLRMLH 92
+ ++G+ A++ PE+ +IL+ S R L+
Sbjct: 98 VSAMIGIIASIRRPELFSKLILIGFSPRFLN 128
>pdb|4F0J|A Chain A, Crystal Structure Of A Probable Hydrolytic Enzyme (Pa3053)
From Pseudomonas Aeruginosa Pao1 At 1.50 A Resolution
Length = 315
Score = 33.5 bits (75), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
Query: 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
VLA + +RV ++D +G+ S KP Y+F+ A+ + + + +A I +
Sbjct: 68 VLADAGYRVIAVDQVGFCKSSKPAHYQ------YSFQQLAANTHALLERLGVARASVIGH 121
Query: 61 SIGGLVGLQAAVMEPEICRGMILLN-ISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKL 119
S GG + + A++ P ++L+N I L PW R + ++ L+ +A G
Sbjct: 122 SXGGXLATRYALLYPRQVERLVLVNPIGLEDWKALGVPW--RSVDDWYRRDLQTSAEGIR 179
Query: 120 FYKMV 124
Y+
Sbjct: 180 QYQQA 184
>pdb|3BF8|A Chain A, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
pdb|3BF8|B Chain B, 1.1 Resolution Structure Of Ybff, A New Esterase From
Escherichia Coli: A Unique Substrate-Binding Crevice
Generated By Domain Arrangement
Length = 255
Score = 33.5 bits (75), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 8/94 (8%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62
L H + +D+ +G S PR +P + A L D D+A FI +S+
Sbjct: 39 LVNDHNIIQVDVRNHGLS----PR----EPVMNYPAMAQDLVDTLDAQQIDKATFIGHSM 90
Query: 63 GGLVGLQAAVMEPEICRGMILLNISLRMLHIKKQ 96
GG + + P+ ++ ++I+ H+++
Sbjct: 91 GGKAVMALTALAPDRIDKLVAIDIAPVDYHVRRH 124
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 5/78 (6%)
Query: 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVG 67
RV +ID+ GYG S P + Y E ++ F + QA FI + G++
Sbjct: 285 RVLAIDMKGYGDSSSPP-----EIEEYAMELLCKEMVTFLDKLGIPQAVFIGHDWAGVMV 339
Query: 68 LQAAVMEPEICRGMILLN 85
A+ PE R + LN
Sbjct: 340 WNMALFYPERVRAVASLN 357
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/152 (19%), Positives = 67/152 (44%), Gaps = 10/152 (6%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63
A+ +RV + DL G+G S Y+ T+ +Q++ +++ + +S+G
Sbjct: 51 AQGYRVVAPDLFGHGRSSH-----LEMVTSYSSLTFLAQIDRVIQELPDQPLLLVGHSMG 105
Query: 64 GLVGLQAAVMEPEICRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKM 123
++ A + P+ + +IL+ + L KK+ + + + + L +T +F +
Sbjct: 106 AMLATAIASVRPKKIKELILVELPLPAEESKKESAVNQ--LTTCLDYLSSTPQHPIFPDV 163
Query: 124 VATSESVRNILCQCYNDTSQVTEELVEKILQP 155
+ +R + + S + L ++I QP
Sbjct: 164 ATAASRLRQAIPSLSEEFSYI---LAQRITQP 192
>pdb|3P2M|A Chain A, Crystal Structure Of A Novel Esterase Rv0045c From
Mycobacterium Tuberculosis
Length = 330
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 11 SIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70
++DL G+G+S ++ P ET A L +++ F + S+GGL ++
Sbjct: 110 AVDLPGHGHSAWREDGNY--SPQLNSETLAPVL----RELAPGAEFVVGMSLGGLTAIRL 163
Query: 71 AVMEPEICRGMILLNIS 87
A M P++ ++L++++
Sbjct: 164 AAMAPDLVGELVLVDVT 180
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 31/120 (25%)
Query: 2 VLAKSHRVYSID-----LIGYGYSDKPNPRDFFDKPF----YTFET-------------W 39
VL + +YS+ L+ +G++ P F + F YT T
Sbjct: 36 VLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMA 95
Query: 40 ASQLNDFCKDVVK---------DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90
AS +D+ D+V D F S+GG + + AA PE G++ +N +LRM
Sbjct: 96 ASTASDWTADIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRM 155
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 49/120 (40%), Gaps = 31/120 (25%)
Query: 2 VLAKSHRVYSID-----LIGYGYSDKPNPRDFFDKPF----YTFET-------------W 39
VL + +YS+ L+ +G++ P F + F YT T
Sbjct: 38 VLPGAEPLYSVGSRIGVLVSHGFTGSPQSMRFLAEGFARAGYTVATPRLTGHGTTPAEMA 97
Query: 40 ASQLNDFCKDVVK---------DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90
AS +D+ D+V D F S+GG + + AA PE G++ +N +LRM
Sbjct: 98 ASTASDWTADIVAAMRWLEERCDVLFMTGLSMGGALTVWAAGQFPERFAGIMPINAALRM 157
>pdb|3AFI|E Chain E, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|A Chain A, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|B Chain B, Crystal Structure Of Dbja (His-Dbja)
pdb|3AFI|F Chain F, Crystal Structure Of Dbja (His-Dbja)
Length = 316
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 13 DLIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71
DLIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 62 DLIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLA 113
Query: 72 VMEPEICRGMILLN 85
P+ RG+ +
Sbjct: 114 ARRPDFVRGLAFME 127
>pdb|3A2M|A Chain A, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2M|B Chain B, Crystal Structure Of Dbja (Wild Type Type I)
pdb|3A2N|A Chain A, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|B Chain B, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|E Chain E, Crystal Structure Of Dbja (Wild Type Type Ii P21)
pdb|3A2N|F Chain F, Crystal Structure Of Dbja (Wild Type Type Ii P21)
Length = 312
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 13 DLIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71
DLIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 62 DLIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLA 113
Query: 72 VMEPEICRGMILLN 85
P+ RG+ +
Sbjct: 114 ARRPDFVRGLAFME 127
>pdb|3A2L|A Chain A, Crystal Structure Of Dbja (Mutant Dbja Delta)
pdb|3A2L|B Chain B, Crystal Structure Of Dbja (Mutant Dbja Delta)
Length = 309
Score = 31.6 bits (70), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 13 DLIGYGYSDKPN-PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71
DLIG+G S KP+ FFD Y L+ F + A+ + G + A
Sbjct: 62 DLIGFGQSGKPDIAYRFFDHVRY--------LDAFIEQRGVTSAYLVAQDWGTALAFHLA 113
Query: 72 VMEPEICRGMILLN 85
P+ RG+ +
Sbjct: 114 ARRPDFVRGLAFME 127
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAF 56
+RV +ID GYG S K Y + A ++ + DVV +QAF
Sbjct: 58 GAGYRVVAIDQRGYGRSSK-----------YRVQK-AYRIKELVGDVVGVLDSYGAEQAF 105
Query: 57 FICNSIGGLVGLQAAVMEPEICRGMILLNI 86
+ + G V A + P+ C G++ +++
Sbjct: 106 VVGHDWGAPVAWTFAWLHPDRCAGVVGISV 135
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 19/90 (21%)
Query: 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAF 56
+RV +ID GYG S K Y + A ++ + DVV +QAF
Sbjct: 52 GAGYRVVAIDQRGYGRSSK-----------YRVQK-AYRIKELVGDVVGVLDSYGAEQAF 99
Query: 57 FICNSIGGLVGLQAAVMEPEICRGMILLNI 86
+ + G V A + P+ C G++ +++
Sbjct: 100 VVGHDWGAPVAWTFAWLHPDRCAGVVGISV 129
>pdb|1C4X|A Chain A, 2-Hydroxy-6-Oxo-6-Phenylhexa-2,4-Dienoate Hydrolase (Bphd)
From Rhodococcus Sp. Strain Rha1
Length = 285
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPN--PRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
LA++ V + DLIG+G S+ P P E +N F + ++ + N
Sbjct: 55 LAENFFVVAPDLIGFGQSEYPETYPGHIMSWVGMRVEQILGLMNHFGIE----KSHIVGN 110
Query: 61 SIGGLVGLQAAVMEPE 76
S+GG V LQ V PE
Sbjct: 111 SMGGAVTLQLVVEAPE 126
>pdb|1M33|A Chain A, Crystal Structure Of Bioh At 1.7 A
Length = 258
Score = 31.2 bits (69), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 18/88 (20%)
Query: 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK---DQAFFIC 59
L+ ++ +DL G+G S R F A L D + V++ D+A ++
Sbjct: 36 LSSHFTLHLVDLPGFGRS-----RGFG----------ALSLADXAEAVLQQAPDKAIWLG 80
Query: 60 NSIGGLVGLQAAVMEPEICRGMILLNIS 87
S+GGLV Q A+ PE R ++ + S
Sbjct: 81 WSLGGLVASQIALTHPERVRALVTVASS 108
>pdb|3OM8|A Chain A, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
pdb|3OM8|B Chain B, The Crystal Structure Of A Hydrolase From Pseudomonas
Aeruginosa Pa01
Length = 266
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 2 VLAKSHRVYSIDLIGYGYSD-KPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICN 60
L + RV D G+G S P P YT + + + +A F+
Sbjct: 49 ALTRHFRVLRYDARGHGASSVPPGP--------YTLARLGEDVLELLDALEVRRAHFLGL 100
Query: 61 SIGGLVGLQAAVMEPEICRGMILLNIS 87
S+GG+VG A+ P+ ++L N S
Sbjct: 101 SLGGIVGQWLALHAPQRIERLVLANTS 127
>pdb|4G5X|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G5X|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
pdb|4G9E|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
pdb|4G9E|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
Complexed With N-butanoyl Homoserine
Length = 279
Score = 30.0 bits (66), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 3 LAKSHRVYSIDLIGYGYS-DKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+ K RV + DL G+G S D +P D+ Y+ E +A + + + + A S
Sbjct: 48 IGKKWRVIAPDLPGHGKSTDAIDP----DRS-YSMEGYADAMTEVMQQLGIADAVVFGWS 102
Query: 62 IGGLVGLQAAVMEPEICRGMILLN 85
+GG +G++ PE+ RG+++
Sbjct: 103 LGGHIGIEMIARYPEM-RGLMITG 125
>pdb|4G8C|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G8C|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant Complexed With N-hexanoyl Homoserine
pdb|4G9G|A Chain A, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
pdb|4G9G|B Chain B, Crystal Structures Of N-acyl Homoserine Lactonase Aidh
E219g Mutant
Length = 279
Score = 30.0 bits (66), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 3 LAKSHRVYSIDLIGYGYS-DKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
+ K RV + DL G+G S D +P D+ Y+ E +A + + + + A S
Sbjct: 48 IGKKWRVIAPDLPGHGKSTDAIDP----DRS-YSMEGYADAMTEVMQQLGIADAVVFGWS 102
Query: 62 IGGLVGLQAAVMEPEICRGMILLN 85
+GG +G++ PE+ RG+++
Sbjct: 103 LGGHIGIEMIARYPEM-RGLMITG 125
>pdb|2VF2|A Chain A, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
pdb|2VF2|B Chain B, X-Ray Crystal Structure Of Hsad From Mycobacterium
Tuberculosis
Length = 311
Score = 30.0 bits (66), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 6/84 (7%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
VLA+ V ++D GYG+SDK F++ Y A L + + + NS
Sbjct: 81 VLARHFHVLAVDQPGYGHSDKRAEHGQFNR--YA----AMALKGLFDQLGLGRVPLVGNS 134
Query: 62 IGGLVGLQAAVMEPEICRGMILLN 85
+GG ++ A+ P ++L+
Sbjct: 135 LGGGTAVRFALDYPARAGRLVLMG 158
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNS 61
V+A +R + DLIG G S KP+ Y + + + F + D + +
Sbjct: 52 VVAAGYRAVAPDLIGXGDSAKPDIE-------YRLQDHVAYXDGFIDALGLDDXVLVIHD 104
Query: 62 IGGLVGLQAAVMEPE 76
G ++G + A + P+
Sbjct: 105 WGSVIGXRHARLNPD 119
>pdb|2LD6|A Chain A, Solution Structure Of Histidine Phosphotransfer Domain Of
Chea
Length = 139
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 83 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 140
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 17 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 76
Query: 141 TSQVTEELVEKI 152
++T +L++KI
Sbjct: 77 EIKITSDLLDKI 88
>pdb|1TQG|A Chain A, Chea Phosphotransferase Domain From Thermotoga Maritima
Length = 105
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 83 LLNISLRMLHIKKQPWYGRPLIRSFQNL--LRNTAAGKLFYKMVATSESVRNILCQCYND 140
L N++ +L ++K P + +F+ L L+ A F M ++ NIL + N
Sbjct: 18 LQNLNDTLLELEKNPEDMELINEAFRALHTLKGMAGTMGFSSMAKLCHTLENILDKARNS 77
Query: 141 TSQVTEELVEKI 152
++T +L++KI
Sbjct: 78 EIKITSDLLDKI 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,994,106
Number of Sequences: 62578
Number of extensions: 232130
Number of successful extensions: 591
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 542
Number of HSP's gapped (non-prelim): 64
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)