Query 028885
Match_columns 202
No_of_seqs 155 out of 1054
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 04:04:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02824 hydrolase, alpha/beta 100.0 2.8E-31 6E-36 193.6 17.3 197 2-199 51-247 (294)
2 PLN02679 hydrolase, alpha/beta 100.0 1.2E-27 2.5E-32 178.6 17.3 190 2-197 110-304 (360)
3 PLN02578 hydrolase 99.9 1.3E-25 2.9E-30 167.3 17.7 188 2-197 108-308 (354)
4 TIGR02240 PHA_depoly_arom poly 99.9 7.1E-26 1.5E-30 163.7 12.8 81 2-89 47-127 (276)
5 PRK03592 haloalkane dehalogena 99.9 1.4E-25 3E-30 163.7 13.7 80 2-88 49-128 (295)
6 KOG4178 Soluble epoxide hydrol 99.9 2.3E-25 4.9E-30 157.5 10.0 83 2-89 66-149 (322)
7 PRK06489 hypothetical protein; 99.9 1.4E-23 3.1E-28 156.9 14.9 86 3-88 102-189 (360)
8 PRK10349 carboxylesterase BioH 99.9 1.4E-23 2.9E-28 150.3 13.9 76 2-89 35-110 (256)
9 PRK11126 2-succinyl-6-hydroxy- 99.9 3.4E-23 7.5E-28 147.0 15.1 78 2-88 24-102 (242)
10 TIGR03056 bchO_mg_che_rel puta 99.9 3.8E-23 8.2E-28 149.5 15.2 82 2-89 50-131 (278)
11 PRK00870 haloalkane dehalogena 99.9 5E-23 1.1E-27 150.7 15.4 81 2-87 68-149 (302)
12 KOG4409 Predicted hydrolase/ac 99.9 3.4E-23 7.5E-28 147.2 13.4 89 2-93 112-200 (365)
13 PLN02965 Probable pheophorbida 99.9 1.9E-23 4.2E-28 149.4 12.1 81 2-88 25-107 (255)
14 TIGR03343 biphenyl_bphD 2-hydr 99.9 1.1E-22 2.4E-27 147.5 14.8 79 4-88 58-136 (282)
15 PRK10673 acyl-CoA esterase; Pr 99.9 1.9E-22 4.2E-27 144.2 15.0 78 2-87 38-115 (255)
16 PRK07581 hypothetical protein; 99.9 1E-22 2.2E-27 151.3 13.6 83 2-88 66-159 (339)
17 PRK03204 haloalkane dehalogena 99.9 2.5E-22 5.5E-27 145.7 14.5 80 2-87 56-135 (286)
18 PLN03087 BODYGUARD 1 domain co 99.9 1.4E-22 3.1E-27 154.2 13.2 78 5-88 231-309 (481)
19 PRK08775 homoserine O-acetyltr 99.9 1.2E-21 2.6E-26 145.7 16.6 78 2-88 94-173 (343)
20 PLN03084 alpha/beta hydrolase 99.9 1.1E-21 2.4E-26 146.5 16.4 84 2-88 149-232 (383)
21 TIGR03611 RutD pyrimidine util 99.9 9.3E-22 2E-26 140.4 14.6 81 2-88 35-115 (257)
22 TIGR02427 protocat_pcaD 3-oxoa 99.9 4E-22 8.7E-27 141.5 11.9 80 2-88 35-114 (251)
23 PLN02385 hydrolase; alpha/beta 99.9 1.9E-22 4.1E-27 150.4 10.5 81 3-89 111-198 (349)
24 PF12697 Abhydrolase_6: Alpha/ 99.9 4.4E-22 9.5E-27 139.2 11.2 83 2-89 20-102 (228)
25 TIGR01392 homoserO_Ac_trn homo 99.9 5.3E-21 1.2E-25 142.7 15.6 87 3-89 69-163 (351)
26 COG2267 PldB Lysophospholipase 99.9 2.7E-21 6E-26 140.1 13.6 81 4-90 59-144 (298)
27 TIGR01738 bioH putative pimelo 99.9 3.8E-21 8.1E-26 136.1 14.0 76 2-89 26-101 (245)
28 TIGR03695 menH_SHCHC 2-succiny 99.9 1.2E-20 2.6E-25 133.8 14.7 82 2-88 23-105 (251)
29 PLN02298 hydrolase, alpha/beta 99.9 1.2E-21 2.6E-26 145.1 9.4 79 5-89 86-170 (330)
30 KOG1454 Predicted hydrolase/ac 99.9 7.2E-22 1.6E-26 144.5 8.0 83 1-88 79-166 (326)
31 PF00561 Abhydrolase_1: alpha/ 99.9 5.5E-22 1.2E-26 139.5 6.8 75 7-87 1-78 (230)
32 PLN02894 hydrolase, alpha/beta 99.9 1.5E-20 3.2E-25 142.1 14.8 86 2-89 127-212 (402)
33 PHA02857 monoglyceride lipase; 99.9 9.5E-21 2.1E-25 137.0 13.2 79 5-89 51-133 (276)
34 PRK10749 lysophospholipase L2; 99.9 1.6E-21 3.5E-26 144.2 9.0 85 4-89 79-167 (330)
35 PRK00175 metX homoserine O-ace 99.9 2.5E-20 5.5E-25 140.1 14.9 87 3-89 88-183 (379)
36 PRK14875 acetoin dehydrogenase 99.9 4.2E-20 9.2E-25 138.9 15.9 80 2-88 153-232 (371)
37 TIGR01250 pro_imino_pep_2 prol 99.8 9.5E-20 2.1E-24 132.0 16.3 79 6-88 53-131 (288)
38 KOG1455 Lysophospholipase [Lip 99.8 8.5E-21 1.8E-25 132.7 8.6 172 4-200 80-260 (313)
39 TIGR01249 pro_imino_pep_1 prol 99.8 3.3E-20 7.1E-25 136.0 11.8 81 4-89 51-131 (306)
40 PLN02980 2-oxoglutarate decarb 99.8 5.3E-19 1.1E-23 152.0 15.7 86 2-87 1393-1479(1655)
41 PRK06765 homoserine O-acetyltr 99.8 1.5E-18 3.2E-23 130.0 14.7 85 5-89 98-197 (389)
42 PLN02511 hydrolase 99.8 1.7E-19 3.8E-24 135.8 9.7 79 3-88 126-210 (388)
43 PLN02652 hydrolase; alpha/beta 99.8 1.5E-18 3.3E-23 130.5 12.0 78 4-88 161-245 (395)
44 PLN02211 methyl indole-3-aceta 99.8 4.5E-18 9.7E-23 122.6 13.3 79 3-87 41-121 (273)
45 KOG2984 Predicted hydrolase [G 99.8 1E-18 2.2E-23 115.3 8.3 155 7-199 72-229 (277)
46 KOG2931 Differentiation-relate 99.8 6.2E-17 1.3E-21 112.7 15.5 178 3-200 75-260 (326)
47 PF03096 Ndr: Ndr family; Int 99.8 1.4E-17 3.1E-22 117.1 12.2 178 3-199 52-232 (283)
48 PRK05855 short chain dehydroge 99.8 1.1E-17 2.3E-22 132.8 11.7 80 2-86 47-129 (582)
49 TIGR01838 PHA_synth_I poly(R)- 99.7 2.4E-16 5.3E-21 121.5 17.0 83 4-91 218-305 (532)
50 PRK10985 putative hydrolase; P 99.7 1.1E-16 2.3E-21 118.3 12.9 83 4-89 85-169 (324)
51 PRK05077 frsA fermentation/res 99.7 2.6E-16 5.5E-21 119.3 14.9 78 4-88 220-300 (414)
52 TIGR01607 PST-A Plasmodium sub 99.7 4.5E-17 9.7E-22 120.5 9.9 83 4-89 72-186 (332)
53 TIGR01836 PHA_synth_III_C poly 99.7 1.3E-16 2.9E-21 119.0 12.3 77 4-90 92-173 (350)
54 COG1647 Esterase/lipase [Gener 99.7 7.8E-17 1.7E-21 108.0 9.7 151 5-200 41-196 (243)
55 TIGR03100 hydr1_PEP hydrolase, 99.7 4.6E-16 1E-20 112.3 13.1 74 5-88 56-134 (274)
56 TIGR03101 hydr2_PEP hydrolase, 99.7 1.5E-16 3.2E-21 113.3 9.0 78 5-89 55-135 (266)
57 PRK13604 luxD acyl transferase 99.6 1.1E-14 2.4E-19 104.6 10.5 77 4-89 62-142 (307)
58 PRK07868 acyl-CoA synthetase; 99.6 2.9E-14 6.3E-19 119.1 13.3 79 4-90 97-179 (994)
59 COG2021 MET2 Homoserine acetyl 99.6 7E-14 1.5E-18 101.1 12.1 85 5-89 91-183 (368)
60 PLN02872 triacylglycerol lipas 99.6 3.4E-13 7.3E-18 101.5 16.1 85 5-90 106-199 (395)
61 COG0596 MhpC Predicted hydrola 99.6 4.2E-14 9E-19 100.7 10.6 74 7-89 51-124 (282)
62 KOG2564 Predicted acetyltransf 99.6 1.6E-14 3.5E-19 100.2 7.2 75 6-87 102-181 (343)
63 KOG1552 Predicted alpha/beta h 99.5 4.7E-14 1E-18 97.3 8.5 76 6-89 88-164 (258)
64 TIGR03230 lipo_lipase lipoprot 99.5 6.6E-14 1.4E-18 105.5 9.1 79 5-90 72-156 (442)
65 PRK10566 esterase; Provisional 99.5 5E-13 1.1E-17 95.3 11.5 81 5-86 53-140 (249)
66 PRK11071 esterase YqiA; Provis 99.5 2.5E-13 5.5E-18 92.7 9.4 63 5-88 31-93 (190)
67 COG0429 Predicted hydrolase of 99.5 4.3E-12 9.3E-17 90.7 14.9 84 4-90 102-187 (345)
68 TIGR01839 PHA_synth_II poly(R) 99.5 3.8E-12 8.2E-17 98.0 14.3 79 3-91 244-331 (560)
69 PF06342 DUF1057: Alpha/beta h 99.4 2.1E-12 4.6E-17 90.4 11.3 79 5-91 61-140 (297)
70 COG3208 GrsT Predicted thioest 99.4 1.1E-12 2.4E-17 89.9 8.7 79 3-88 30-112 (244)
71 KOG2382 Predicted alpha/beta h 99.4 3.5E-12 7.7E-17 91.1 11.3 74 7-88 81-159 (315)
72 KOG1838 Alpha/beta hydrolase [ 99.4 7.5E-12 1.6E-16 92.4 11.4 84 3-89 151-236 (409)
73 TIGR01849 PHB_depoly_PhaZ poly 99.4 2E-11 4.3E-16 91.4 13.2 80 3-91 127-211 (406)
74 cd00707 Pancreat_lipase_like P 99.3 1.6E-12 3.4E-17 93.7 5.6 79 5-90 65-149 (275)
75 PF00326 Peptidase_S9: Prolyl 99.3 2E-11 4.3E-16 85.1 10.4 87 4-90 12-101 (213)
76 PF10230 DUF2305: Uncharacteri 99.3 1.1E-10 2.3E-15 83.8 13.0 87 3-90 29-124 (266)
77 PF06500 DUF1100: Alpha/beta h 99.3 6E-11 1.3E-15 88.2 11.9 79 4-89 216-297 (411)
78 PF12695 Abhydrolase_5: Alpha/ 99.3 2E-11 4.2E-16 79.8 7.7 70 4-86 24-93 (145)
79 TIGR00976 /NonD putative hydro 99.2 1.6E-11 3.5E-16 96.9 5.9 80 4-91 51-135 (550)
80 PLN02442 S-formylglutathione h 99.2 2.6E-10 5.5E-15 82.9 11.5 54 36-89 126-179 (283)
81 COG3243 PhaC Poly(3-hydroxyalk 99.2 2.3E-10 4.9E-15 84.4 10.6 192 3-200 136-344 (445)
82 PLN02733 phosphatidylcholine-s 99.1 5.8E-11 1.3E-15 90.2 4.7 82 3-89 117-202 (440)
83 TIGR02821 fghA_ester_D S-formy 99.1 8.9E-10 1.9E-14 79.8 8.7 84 6-89 72-174 (275)
84 KOG4391 Predicted alpha/beta h 99.0 3.8E-10 8.2E-15 76.1 4.5 74 6-89 106-185 (300)
85 TIGR01840 esterase_phb esteras 99.0 2.7E-09 5.8E-14 74.4 8.2 84 5-88 42-130 (212)
86 TIGR03502 lipase_Pla1_cef extr 99.0 2.8E-09 6.1E-14 85.8 9.0 73 3-75 472-577 (792)
87 PLN00021 chlorophyllase 99.0 1.3E-09 2.9E-14 79.8 6.3 77 5-88 78-166 (313)
88 PRK05371 x-prolyl-dipeptidyl a 98.9 5E-09 1.1E-13 85.3 9.1 79 3-89 276-374 (767)
89 COG1506 DAP2 Dipeptidyl aminop 98.9 4.6E-09 1E-13 84.1 8.2 84 3-88 420-507 (620)
90 KOG4667 Predicted esterase [Li 98.9 9E-09 1.9E-13 69.5 7.9 76 5-88 61-139 (269)
91 PF00975 Thioesterase: Thioest 98.9 8.3E-09 1.8E-13 72.7 7.8 76 3-87 23-103 (229)
92 PRK10252 entF enterobactin syn 98.8 2.3E-08 5E-13 86.7 8.9 77 2-87 1090-1170(1296)
93 PF02129 Peptidase_S15: X-Pro 98.7 3.2E-08 7E-13 71.6 6.5 80 4-91 55-139 (272)
94 PF07819 PGAP1: PGAP1-like pro 98.7 1.3E-07 2.9E-12 66.2 9.1 74 5-88 38-123 (225)
95 PF08538 DUF1749: Protein of u 98.7 1.1E-07 2.5E-12 68.3 8.1 77 5-91 62-151 (303)
96 smart00824 PKS_TE Thioesterase 98.7 1.8E-07 3.9E-12 64.7 9.0 77 2-87 21-101 (212)
97 COG4757 Predicted alpha/beta h 98.7 1.8E-08 3.8E-13 68.8 2.9 78 4-87 55-137 (281)
98 KOG2565 Predicted hydrolases o 98.6 1.4E-07 3E-12 68.8 6.7 73 7-85 189-261 (469)
99 PF05448 AXE1: Acetyl xylan es 98.6 1.1E-06 2.5E-11 64.7 10.9 85 4-89 107-210 (320)
100 PRK10115 protease 2; Provision 98.6 8.8E-07 1.9E-11 71.9 10.6 88 3-90 471-561 (686)
101 PF12146 Hydrolase_4: Putative 98.5 1.7E-07 3.8E-12 54.3 4.4 39 4-48 41-79 (79)
102 KOG1553 Predicted alpha/beta h 98.5 3.1E-07 6.8E-12 66.5 6.4 76 4-87 266-344 (517)
103 PF11339 DUF3141: Protein of u 98.5 5.3E-06 1.1E-10 63.5 13.0 61 31-91 113-178 (581)
104 PF06821 Ser_hydrolase: Serine 98.5 2.1E-07 4.6E-12 62.3 4.7 55 33-88 36-91 (171)
105 PRK10162 acetyl esterase; Prov 98.5 5.6E-07 1.2E-11 66.6 7.3 75 5-89 111-196 (318)
106 COG2945 Predicted hydrolase of 98.5 7.4E-07 1.6E-11 59.4 6.8 80 4-89 58-138 (210)
107 PTZ00472 serine carboxypeptida 98.5 8.9E-07 1.9E-11 68.6 8.3 83 3-90 118-218 (462)
108 COG3319 Thioesterase domains o 98.5 1.1E-06 2.3E-11 62.4 7.7 78 3-89 23-104 (257)
109 COG3545 Predicted esterase of 98.4 9.9E-07 2.2E-11 57.9 6.7 56 31-87 38-93 (181)
110 PF01738 DLH: Dienelactone hyd 98.4 6E-07 1.3E-11 62.8 5.0 80 4-86 39-130 (218)
111 PF05728 UPF0227: Uncharacteri 98.4 1.6E-06 3.4E-11 58.9 6.8 55 32-89 38-92 (187)
112 PF08840 BAAT_C: BAAT / Acyl-C 98.4 1.5E-07 3.3E-12 65.5 1.7 51 39-90 5-58 (213)
113 COG3458 Acetyl esterase (deace 98.4 2.7E-06 6E-11 59.8 7.4 85 4-89 107-211 (321)
114 PF05677 DUF818: Chlamydia CHL 98.3 2.1E-06 4.6E-11 62.4 7.0 61 5-75 170-237 (365)
115 PF06028 DUF915: Alpha/beta hy 98.3 1.9E-06 4.1E-11 61.3 6.1 58 34-91 80-146 (255)
116 PF05577 Peptidase_S28: Serine 98.3 2E-06 4.4E-11 66.5 6.6 85 6-90 59-150 (434)
117 KOG2624 Triglyceride lipase-ch 98.3 3.2E-05 7E-10 58.5 12.6 86 5-90 105-201 (403)
118 PF03583 LIP: Secretory lipase 98.2 1.8E-05 3.8E-10 57.8 9.8 82 2-91 22-116 (290)
119 PF12740 Chlorophyllase2: Chlo 98.1 6.2E-06 1.3E-10 58.4 5.2 78 4-88 42-131 (259)
120 PRK11460 putative hydrolase; P 98.1 8.9E-06 1.9E-10 57.5 6.1 35 53-87 103-137 (232)
121 PF07859 Abhydrolase_3: alpha/ 98.1 7.5E-06 1.6E-10 56.9 5.2 74 5-88 28-110 (211)
122 PF05990 DUF900: Alpha/beta hy 98.1 8.5E-06 1.8E-10 57.5 5.4 76 8-89 50-138 (233)
123 PF02230 Abhydrolase_2: Phosph 98.0 1.8E-05 4E-10 55.3 5.9 54 36-89 83-141 (216)
124 COG2936 Predicted acyl esteras 98.0 3E-05 6.5E-10 60.6 7.2 81 3-90 77-161 (563)
125 PF12715 Abhydrolase_7: Abhydr 98.0 2.3E-05 4.9E-10 58.3 6.2 81 4-87 158-259 (390)
126 cd00741 Lipase Lipase. Lipase 98.0 2.5E-05 5.3E-10 51.6 5.8 50 38-87 9-66 (153)
127 PF01674 Lipase_2: Lipase (cla 98.0 1.5E-05 3.3E-10 55.4 4.7 66 4-73 27-95 (219)
128 PRK10439 enterobactin/ferric e 97.9 4.7E-05 1E-09 58.3 7.7 50 39-88 269-323 (411)
129 PF00151 Lipase: Lipase; Inte 97.9 4.3E-06 9.3E-11 61.9 1.9 80 5-91 103-190 (331)
130 PF06057 VirJ: Bacterial virul 97.9 1.4E-05 3E-10 53.7 3.9 72 5-88 28-107 (192)
131 PF02450 LCAT: Lecithin:choles 97.9 2.3E-05 5E-10 59.7 5.6 52 38-89 101-161 (389)
132 COG0412 Dienelactone hydrolase 97.9 4.5E-05 9.8E-10 54.0 6.6 85 4-89 52-147 (236)
133 PF10503 Esterase_phd: Esteras 97.9 0.00011 2.3E-09 51.3 8.0 50 39-88 81-132 (220)
134 COG0400 Predicted esterase [Ge 97.9 3.1E-05 6.6E-10 53.4 5.1 57 35-91 79-137 (207)
135 COG1075 LipA Predicted acetylt 97.9 4.5E-05 9.8E-10 56.9 6.2 55 33-87 107-163 (336)
136 PF01764 Lipase_3: Lipase (cla 97.8 4.3E-05 9.3E-10 49.5 5.2 39 37-75 48-86 (140)
137 PF00756 Esterase: Putative es 97.8 2.3E-05 4.9E-10 56.1 3.9 50 39-88 98-150 (251)
138 KOG2281 Dipeptidyl aminopeptid 97.8 3.6E-05 7.8E-10 60.4 4.8 86 4-89 674-763 (867)
139 PRK04940 hypothetical protein; 97.8 8.9E-05 1.9E-09 49.7 6.1 52 36-90 39-94 (180)
140 PF03959 FSH1: Serine hydrolas 97.6 0.00033 7.1E-09 48.9 7.3 53 34-87 84-144 (212)
141 PF07224 Chlorophyllase: Chlor 97.6 0.00016 3.5E-09 51.0 5.1 81 4-91 71-160 (307)
142 PF11187 DUF2974: Protein of u 97.6 0.00023 5E-09 49.9 5.7 46 43-89 75-124 (224)
143 KOG2183 Prolylcarboxypeptidase 97.6 0.00024 5.2E-09 53.2 5.9 83 7-89 112-203 (492)
144 cd00519 Lipase_3 Lipase (class 97.5 0.00019 4.2E-09 50.6 5.0 36 52-87 127-167 (229)
145 COG2819 Predicted hydrolase of 97.5 0.00025 5.4E-09 50.3 5.2 54 35-88 112-172 (264)
146 COG4814 Uncharacterized protei 97.5 0.00031 6.8E-09 49.2 5.3 57 33-89 112-177 (288)
147 COG0657 Aes Esterase/lipase [L 97.4 0.00072 1.6E-08 50.1 7.3 77 4-90 108-193 (312)
148 KOG4627 Kynurenine formamidase 97.4 0.00042 9.2E-09 47.1 5.2 77 2-91 93-175 (270)
149 COG3571 Predicted hydrolase of 97.4 0.0012 2.6E-08 43.2 6.9 81 5-91 42-127 (213)
150 KOG2369 Lecithin:cholesterol a 97.4 0.00028 6.1E-09 53.7 4.3 53 35-87 164-224 (473)
151 KOG3975 Uncharacterized conser 97.3 0.0014 3E-08 46.0 7.0 87 5-92 58-151 (301)
152 KOG4840 Predicted hydrolases o 97.3 0.00061 1.3E-08 46.9 5.1 78 4-91 64-147 (299)
153 PLN02162 triacylglycerol lipas 97.3 0.00072 1.6E-08 51.8 5.8 35 38-72 263-297 (475)
154 PF09752 DUF2048: Uncharacteri 97.3 0.00092 2E-08 49.4 6.1 84 1-87 116-209 (348)
155 PF05057 DUF676: Putative seri 97.2 0.00041 8.9E-09 48.6 3.8 36 37-72 60-97 (217)
156 PLN02571 triacylglycerol lipas 97.2 0.00068 1.5E-08 51.4 4.9 37 37-73 208-246 (413)
157 PLN02454 triacylglycerol lipas 97.2 0.00087 1.9E-08 50.8 5.2 32 42-73 215-248 (414)
158 PF00450 Peptidase_S10: Serine 97.2 0.0019 4.2E-08 49.7 7.3 84 3-90 82-183 (415)
159 COG3509 LpqC Poly(3-hydroxybut 97.2 0.0035 7.5E-08 45.2 7.8 54 35-88 124-179 (312)
160 PF01083 Cutinase: Cutinase; 97.2 0.0012 2.5E-08 44.8 5.2 51 39-89 67-123 (179)
161 COG4782 Uncharacterized protei 97.2 0.0016 3.4E-08 48.2 6.1 81 7-89 147-235 (377)
162 PF02273 Acyl_transf_2: Acyl t 97.1 0.0027 5.8E-08 44.6 6.6 77 4-89 55-135 (294)
163 COG0627 Predicted esterase [Ge 97.1 0.00063 1.4E-08 50.1 3.8 58 34-91 127-190 (316)
164 PLN00413 triacylglycerol lipas 97.1 0.0017 3.6E-08 50.0 6.1 35 38-72 269-303 (479)
165 PLN02517 phosphatidylcholine-s 97.1 0.0012 2.6E-08 52.2 5.1 38 51-88 211-263 (642)
166 PF06259 Abhydrolase_8: Alpha/ 97.1 0.002 4.4E-08 43.3 5.6 54 36-89 87-145 (177)
167 PF03403 PAF-AH_p_II: Platelet 97.1 0.00023 5E-09 54.0 1.1 37 53-90 228-264 (379)
168 PF11288 DUF3089: Protein of u 97.0 0.0018 4E-08 44.5 5.2 41 34-74 75-116 (207)
169 PLN02408 phospholipase A1 97.0 0.0015 3.3E-08 48.8 5.0 37 38-74 183-221 (365)
170 KOG1515 Arylacetamide deacetyl 97.0 0.0071 1.5E-07 45.1 8.3 75 6-90 123-209 (336)
171 KOG2100 Dipeptidyl aminopeptid 97.0 0.0028 6.1E-08 52.5 6.6 86 4-89 556-645 (755)
172 KOG2182 Hydrolytic enzymes of 96.9 0.0037 8E-08 48.2 6.6 84 6-89 118-208 (514)
173 KOG3724 Negative regulator of 96.9 0.0037 8.1E-08 50.8 6.8 55 33-87 149-219 (973)
174 COG4099 Predicted peptidase [G 96.9 0.0023 5E-08 46.1 4.8 52 38-89 251-305 (387)
175 PF05277 DUF726: Protein of un 96.9 0.0023 4.9E-08 47.7 4.9 40 50-89 217-261 (345)
176 PLN02934 triacylglycerol lipas 96.9 0.0022 4.8E-08 49.7 5.0 35 38-72 306-340 (515)
177 cd00312 Esterase_lipase Estera 96.8 0.0039 8.4E-08 49.3 6.3 78 7-89 126-214 (493)
178 PF12048 DUF3530: Protein of u 96.8 0.0048 1E-07 45.6 6.1 44 45-88 185-229 (310)
179 PLN02324 triacylglycerol lipas 96.8 0.0031 6.7E-08 47.9 5.0 35 39-73 199-235 (415)
180 COG3150 Predicted esterase [Ge 96.7 0.0053 1.1E-07 40.5 5.2 54 33-89 39-92 (191)
181 PLN02310 triacylglycerol lipas 96.7 0.0038 8.3E-08 47.4 4.8 37 37-73 189-229 (405)
182 PLN02802 triacylglycerol lipas 96.6 0.004 8.6E-08 48.4 4.8 36 39-74 314-351 (509)
183 PLN02753 triacylglycerol lipas 96.5 0.005 1.1E-07 48.0 4.8 36 38-73 292-332 (531)
184 PLN03037 lipase class 3 family 96.5 0.0054 1.2E-07 47.8 4.8 36 38-73 299-338 (525)
185 PLN02213 sinapoylglucose-malat 96.5 0.016 3.4E-07 43.2 7.1 78 7-89 2-97 (319)
186 COG2382 Fes Enterochelin ester 96.5 0.0021 4.5E-08 46.4 2.4 36 54-89 178-213 (299)
187 PLN02719 triacylglycerol lipas 96.4 0.0069 1.5E-07 47.2 4.8 35 39-73 279-318 (518)
188 PLN02761 lipase class 3 family 96.3 0.0079 1.7E-07 47.0 4.8 37 37-73 272-314 (527)
189 KOG3101 Esterase D [General fu 96.3 0.00019 4.1E-09 48.9 -3.4 40 52-91 140-179 (283)
190 KOG3847 Phospholipase A2 (plat 96.1 0.0025 5.4E-08 46.3 1.3 36 53-89 241-276 (399)
191 KOG4569 Predicted lipase [Lipi 96.1 0.011 2.5E-07 44.2 4.8 37 37-73 155-191 (336)
192 PLN02847 triacylglycerol lipas 96.1 0.012 2.7E-07 46.6 5.0 22 52-73 250-271 (633)
193 KOG2029 Uncharacterized conser 96.0 0.013 2.8E-07 46.3 4.7 36 52-87 525-571 (697)
194 PLN02633 palmitoyl protein thi 96.0 0.034 7.4E-07 40.7 6.6 56 32-87 71-130 (314)
195 PF10340 DUF2424: Protein of u 96.0 0.039 8.5E-07 41.7 7.0 80 6-91 154-238 (374)
196 PF04301 DUF452: Protein of un 95.9 0.047 1E-06 37.9 6.5 38 51-90 55-92 (213)
197 PLN02209 serine carboxypeptida 95.8 0.038 8.3E-07 43.0 6.4 81 4-89 115-213 (437)
198 PLN03016 sinapoylglucose-malat 95.7 0.043 9.3E-07 42.7 6.4 85 4-89 113-211 (433)
199 COG4947 Uncharacterized protei 95.6 0.018 4E-07 38.2 3.4 44 48-91 96-139 (227)
200 PF07082 DUF1350: Protein of u 95.5 0.05 1.1E-06 38.5 5.5 34 54-87 91-124 (250)
201 PLN02606 palmitoyl-protein thi 95.5 0.058 1.2E-06 39.5 5.9 54 34-87 74-131 (306)
202 COG1770 PtrB Protease II [Amin 95.4 0.046 1E-06 43.9 5.7 61 32-92 504-566 (682)
203 PF07519 Tannase: Tannase and 95.4 0.11 2.3E-06 41.0 7.7 84 2-90 55-152 (474)
204 COG4188 Predicted dienelactone 95.2 0.053 1.1E-06 40.6 5.1 73 4-76 96-182 (365)
205 PF02089 Palm_thioest: Palmito 95.2 0.091 2E-06 38.1 6.2 52 36-87 61-115 (279)
206 PF11144 DUF2920: Protein of u 95.1 0.044 9.5E-07 41.7 4.5 35 54-88 185-219 (403)
207 COG2939 Carboxypeptidase C (ca 94.7 0.16 3.5E-06 39.7 6.7 81 5-90 145-238 (498)
208 KOG3967 Uncharacterized conser 94.7 0.13 2.9E-06 35.5 5.6 43 45-87 182-226 (297)
209 COG3946 VirJ Type IV secretory 94.4 0.096 2.1E-06 39.7 4.8 69 5-85 286-362 (456)
210 PF05576 Peptidase_S37: PS-10 94.1 0.037 8E-07 42.1 2.2 76 8-87 90-168 (448)
211 PF10142 PhoPQ_related: PhoPQ- 94.1 0.45 9.8E-06 36.2 7.9 45 42-87 158-205 (367)
212 KOG4540 Putative lipase essent 94.0 0.11 2.3E-06 37.7 4.1 31 45-75 268-298 (425)
213 COG5153 CVT17 Putative lipase 94.0 0.11 2.3E-06 37.7 4.1 31 45-75 268-298 (425)
214 KOG3043 Predicted hydrolase re 93.4 0.035 7.6E-07 38.6 0.9 82 5-88 66-154 (242)
215 PF08237 PE-PPE: PE-PPE domain 93.1 0.63 1.4E-05 32.9 6.8 36 52-87 47-88 (225)
216 COG2272 PnbA Carboxylesterase 93.0 0.13 2.8E-06 40.1 3.5 55 34-89 156-218 (491)
217 KOG2112 Lysophospholipase [Lip 92.4 0.47 1E-05 32.7 5.2 55 35-89 70-129 (206)
218 PF00135 COesterase: Carboxyle 91.4 0.64 1.4E-05 37.2 5.9 58 32-89 182-246 (535)
219 KOG2385 Uncharacterized conser 91.2 0.45 9.7E-06 37.5 4.5 42 49-90 443-489 (633)
220 KOG1551 Uncharacterized conser 90.7 0.31 6.7E-06 35.0 3.1 37 51-87 193-229 (371)
221 KOG1202 Animal-type fatty acid 90.7 0.9 2E-05 39.9 6.1 59 32-90 2160-2221(2376)
222 KOG2237 Predicted serine prote 90.6 0.62 1.3E-05 37.7 4.9 88 4-91 497-587 (712)
223 COG2830 Uncharacterized protei 90.5 1.1 2.3E-05 29.8 5.1 36 52-89 56-91 (214)
224 PRK10279 hypothetical protein; 90.3 0.27 5.9E-06 36.3 2.7 35 42-76 22-56 (300)
225 cd01714 ETF_beta The electron 90.1 1.6 3.6E-05 30.2 6.2 52 32-84 89-145 (202)
226 KOG1282 Serine carboxypeptidas 89.5 1.5 3.2E-05 34.5 6.1 86 5-90 116-215 (454)
227 KOG2551 Phospholipase/carboxyh 89.5 1 2.3E-05 31.5 4.7 52 33-87 85-146 (230)
228 cd07225 Pat_PNPLA6_PNPLA7 Pata 89.3 0.59 1.3E-05 34.7 3.8 35 41-75 31-65 (306)
229 COG4553 DepA Poly-beta-hydroxy 89.2 2.6 5.6E-05 31.1 6.7 79 5-91 129-212 (415)
230 PF00698 Acyl_transf_1: Acyl t 89.0 0.4 8.7E-06 35.7 2.8 29 43-71 74-102 (318)
231 smart00827 PKS_AT Acyl transfe 88.2 0.72 1.6E-05 33.9 3.6 30 43-72 72-101 (298)
232 cd07198 Patatin Patatin-like p 88.2 0.88 1.9E-05 30.6 3.8 36 41-76 14-49 (172)
233 cd07227 Pat_Fungal_NTE1 Fungal 87.9 0.87 1.9E-05 33.2 3.7 34 41-74 26-59 (269)
234 COG1752 RssA Predicted esteras 87.6 0.91 2E-05 33.7 3.9 38 39-76 25-62 (306)
235 TIGR03131 malonate_mdcH malona 87.4 0.88 1.9E-05 33.5 3.7 30 43-72 66-95 (295)
236 KOG4372 Predicted alpha/beta h 87.4 0.23 5E-06 37.8 0.6 36 34-69 131-166 (405)
237 cd07207 Pat_ExoU_VipD_like Exo 86.9 1.1 2.3E-05 30.7 3.7 34 42-75 16-49 (194)
238 cd07210 Pat_hypo_W_succinogene 86.8 1.3 2.7E-05 31.3 4.0 34 42-75 17-50 (221)
239 TIGR00128 fabD malonyl CoA-acy 85.9 1.1 2.4E-05 32.8 3.5 29 44-72 73-102 (290)
240 KOG2541 Palmitoyl protein thio 85.7 3.4 7.4E-05 30.0 5.6 54 34-87 71-127 (296)
241 cd07228 Pat_NTE_like_bacteria 84.3 1.7 3.8E-05 29.2 3.7 34 43-76 18-51 (175)
242 PF09949 DUF2183: Uncharacteri 84.1 7.3 0.00016 23.7 6.9 47 37-83 49-97 (100)
243 cd07209 Pat_hypo_Ecoli_Z1214_l 83.6 1.9 4.2E-05 30.2 3.7 36 41-76 14-49 (215)
244 cd07230 Pat_TGL4-5_like Triacy 83.4 1.1 2.3E-05 35.0 2.6 43 39-81 87-129 (421)
245 PF11713 Peptidase_C80: Peptid 82.5 1.4 2.9E-05 29.3 2.5 50 12-65 59-116 (157)
246 COG1576 Uncharacterized conser 82.3 4.6 9.9E-05 26.6 4.7 51 2-69 63-114 (155)
247 cd07232 Pat_PLPL Patain-like p 81.8 1.4 2.9E-05 34.3 2.6 44 39-82 81-124 (407)
248 cd07229 Pat_TGL3_like Triacylg 80.9 1.6 3.5E-05 33.6 2.6 41 43-83 101-141 (391)
249 cd07205 Pat_PNPLA6_PNPLA7_NTE1 80.7 3.2 6.9E-05 27.9 3.9 32 43-74 18-49 (175)
250 cd07231 Pat_SDP1-like Sugar-De 80.5 1.7 3.6E-05 32.4 2.5 40 39-78 82-121 (323)
251 TIGR02816 pfaB_fam PfaB family 79.9 2.5 5.5E-05 34.1 3.6 32 43-74 254-286 (538)
252 cd07208 Pat_hypo_Ecoli_yjju_li 77.5 4.1 9E-05 29.5 3.9 37 41-77 14-51 (266)
253 cd07212 Pat_PNPLA9 Patatin-lik 76.9 5.7 0.00012 29.7 4.5 19 56-74 35-53 (312)
254 PF02590 SPOUT_MTase: Predicte 76.3 5.5 0.00012 26.4 3.8 46 3-63 64-109 (155)
255 cd07224 Pat_like Patatin-like 74.8 5.4 0.00012 28.4 3.8 37 39-75 13-51 (233)
256 KOG1516 Carboxylesterase and r 74.2 13 0.00028 30.2 6.2 59 32-90 169-234 (545)
257 PF10081 Abhydrolase_9: Alpha/ 73.2 6.2 0.00014 28.9 3.7 37 54-90 110-149 (289)
258 PRK00103 rRNA large subunit me 73.1 13 0.00028 24.7 5.0 46 4-64 65-110 (157)
259 PF08386 Abhydrolase_4: TAP-li 72.9 3.1 6.8E-05 25.3 1.9 17 184-201 33-49 (103)
260 COG3571 Predicted hydrolase of 72.2 3.1 6.7E-05 27.8 1.8 20 179-199 136-155 (213)
261 PF12242 Eno-Rase_NADH_b: NAD( 72.2 9.6 0.00021 21.9 3.5 24 51-74 38-61 (78)
262 KOG1283 Serine carboxypeptidas 72.1 12 0.00027 28.1 5.0 79 8-90 73-168 (414)
263 KOG3253 Predicted alpha/beta h 71.9 1.2 2.5E-05 36.1 -0.1 55 35-89 224-287 (784)
264 PF03490 Varsurf_PPLC: Variant 71.6 5.9 0.00013 20.4 2.4 29 32-60 4-32 (51)
265 COG1505 Serine proteases of th 70.5 0.72 1.6E-05 37.1 -1.5 86 2-90 446-537 (648)
266 cd07206 Pat_TGL3-4-5_SDP1 Tria 70.5 6.8 0.00015 29.1 3.5 35 42-76 86-120 (298)
267 cd07204 Pat_PNPLA_like Patatin 70.1 8.1 0.00017 27.7 3.8 35 41-75 15-53 (243)
268 cd07222 Pat_PNPLA4 Patatin-lik 69.3 6 0.00013 28.4 3.0 37 42-79 16-56 (246)
269 cd07218 Pat_iPLA2 Calcium-inde 67.5 10 0.00022 27.3 3.8 34 42-75 17-52 (245)
270 COG0218 Predicted GTPase [Gene 67.2 7.2 0.00016 27.0 2.8 32 9-49 72-103 (200)
271 KOG3043 Predicted hydrolase re 65.1 4.4 9.6E-05 28.6 1.5 19 178-196 157-175 (242)
272 PF00448 SRP54: SRP54-type pro 64.6 44 0.00095 23.1 6.4 66 5-85 82-149 (196)
273 cd07221 Pat_PNPLA3 Patatin-lik 64.4 13 0.00027 27.0 3.8 22 54-75 33-54 (252)
274 TIGR03712 acc_sec_asp2 accesso 63.2 9.6 0.00021 30.3 3.2 49 37-87 339-389 (511)
275 cd07220 Pat_PNPLA2 Patatin-lik 63.2 13 0.00027 26.9 3.6 36 40-75 19-58 (249)
276 PF14253 AbiH: Bacteriophage a 63.0 9.6 0.00021 27.6 3.1 15 52-66 234-248 (270)
277 cd07213 Pat17_PNPLA8_PNPLA9_li 62.6 11 0.00024 27.8 3.3 19 56-74 37-55 (288)
278 PLN02777 photosystem I P subun 62.2 24 0.00052 23.5 4.4 52 34-86 74-125 (167)
279 cd01819 Patatin_and_cPLA2 Pata 61.8 16 0.00034 24.1 3.7 29 43-71 16-46 (155)
280 COG3621 Patatin [General funct 59.0 37 0.00079 25.8 5.3 57 2-76 4-65 (394)
281 cd07211 Pat_PNPLA8 Patatin-lik 58.1 15 0.00032 27.4 3.4 17 56-72 44-60 (308)
282 cd01985 ETF The electron trans 56.6 52 0.0011 22.2 5.6 42 32-74 72-114 (181)
283 TIGR00246 tRNA_RlmH_YbeA rRNA 56.2 31 0.00067 22.9 4.2 43 7-65 66-108 (153)
284 cd07217 Pat17_PNPLA8_PNPLA9_li 55.5 11 0.00023 28.7 2.3 18 56-73 44-61 (344)
285 PF06833 MdcE: Malonate decarb 55.2 41 0.00089 24.1 4.9 58 8-73 67-129 (234)
286 KOG2214 Predicted esterase of 54.3 10 0.00022 30.2 2.0 50 34-83 183-232 (543)
287 cd01715 ETF_alpha The electron 54.1 49 0.0011 22.1 5.1 41 33-74 65-106 (168)
288 KOG2551 Phospholipase/carboxyh 53.6 8.9 0.00019 27.0 1.5 21 180-200 158-178 (230)
289 PRK03363 fixB putative electro 51.7 51 0.0011 24.8 5.2 41 34-74 62-103 (313)
290 cd02651 nuc_hydro_IU_UC_XIUA n 51.4 63 0.0014 24.1 5.8 49 37-88 99-151 (302)
291 PRK04148 hypothetical protein; 51.2 28 0.00061 22.5 3.4 45 39-87 4-48 (134)
292 COG0331 FabD (acyl-carrier-pro 50.5 26 0.00057 26.3 3.6 22 51-72 83-104 (310)
293 PF01118 Semialdhyde_dh: Semia 50.3 29 0.00064 21.6 3.4 32 54-86 1-33 (121)
294 PF01734 Patatin: Patatin-like 50.3 18 0.00039 24.1 2.7 23 52-74 26-48 (204)
295 COG2230 Cfa Cyclopropane fatty 49.8 56 0.0012 24.2 5.1 51 37-88 55-108 (283)
296 TIGR02813 omega_3_PfaA polyket 49.7 20 0.00042 35.2 3.4 29 43-71 664-692 (2582)
297 PLN00022 electron transfer fla 49.6 76 0.0017 24.4 5.9 42 32-74 98-140 (356)
298 PF03283 PAE: Pectinacetyleste 49.5 48 0.001 25.5 5.0 35 53-87 156-194 (361)
299 PF08484 Methyltransf_14: C-me 49.3 76 0.0016 21.2 5.3 36 52-87 68-103 (160)
300 PLN00179 acyl- [acyl-carrier p 48.2 27 0.0006 26.8 3.4 69 12-82 288-363 (390)
301 PLN02752 [acyl-carrier protein 48.0 22 0.00048 27.0 3.0 18 55-72 126-143 (343)
302 COG3887 Predicted signaling pr 48.0 63 0.0014 26.7 5.4 35 52-87 337-377 (655)
303 TIGR03607 patatin-related prot 46.5 27 0.00059 29.7 3.4 22 51-72 64-85 (739)
304 PF09994 DUF2235: Uncharacteri 46.1 1.1E+02 0.0024 22.5 6.2 26 48-73 86-112 (277)
305 PRK12467 peptide synthase; Pro 45.5 84 0.0018 32.8 6.9 73 4-85 3716-3792(3956)
306 PRK14974 cell division protein 45.2 1.2E+02 0.0026 23.2 6.4 66 5-85 221-288 (336)
307 cd07199 Pat17_PNPLA8_PNPLA9_li 44.3 46 0.00099 24.0 4.0 18 56-73 37-54 (258)
308 PF00862 Sucrose_synth: Sucros 43.6 52 0.0011 26.6 4.4 41 33-73 380-422 (550)
309 PRK11789 N-acetyl-anhydromuran 43.2 33 0.00072 23.6 3.0 28 35-62 131-158 (185)
310 cd01311 PDC_hydrolase 2-pyrone 43.1 1.3E+02 0.0027 21.8 6.8 47 40-87 30-79 (263)
311 cd00883 beta_CA_cladeA Carboni 42.7 44 0.00095 22.8 3.5 32 40-71 68-99 (182)
312 cd07219 Pat_PNPLA1 Patatin-lik 42.6 38 0.00081 26.3 3.4 32 42-73 29-64 (382)
313 KOG4389 Acetylcholinesterase/B 42.5 69 0.0015 26.0 4.8 50 41-90 204-257 (601)
314 COG4667 Predicted esterase of 42.4 34 0.00074 25.1 3.0 32 52-83 38-70 (292)
315 TIGR01425 SRP54_euk signal rec 42.2 1.3E+02 0.0028 23.9 6.3 65 5-84 181-247 (429)
316 PF04198 Sugar-bind: Putative 42.1 88 0.0019 22.7 5.2 52 34-86 33-84 (255)
317 cd01406 SIR2-like Sir2-like: P 41.8 52 0.0011 23.5 4.0 64 17-86 143-218 (242)
318 PF00091 Tubulin: Tubulin/FtsZ 41.8 56 0.0012 22.9 4.1 17 51-67 122-138 (216)
319 PHA00490 terminal protein 41.6 37 0.0008 23.6 2.9 38 43-81 105-142 (266)
320 KOG3086 Predicted dioxygenase 41.5 1.1E+02 0.0024 22.2 5.3 57 31-87 14-78 (296)
321 PRK07877 hypothetical protein; 41.2 50 0.0011 28.2 4.2 37 48-87 103-140 (722)
322 cd06143 PAN2_exo DEDDh 3'-5' e 41.0 39 0.00083 23.0 2.9 23 49-71 97-120 (174)
323 cd07216 Pat17_PNPLA8_PNPLA9_li 40.4 20 0.00043 26.7 1.7 17 56-72 45-61 (309)
324 COG4850 Uncharacterized conser 40.3 75 0.0016 24.1 4.5 46 42-87 267-314 (373)
325 cd00382 beta_CA Carbonic anhyd 40.1 55 0.0012 20.5 3.4 30 39-68 45-74 (119)
326 PF06858 NOG1: Nucleolar GTP-b 39.9 63 0.0014 17.4 5.2 37 8-58 17-53 (58)
327 cd07214 Pat17_isozyme_like Pat 39.5 22 0.00049 27.1 1.9 19 56-74 46-64 (349)
328 PRK10319 N-acetylmuramoyl-l-al 39.1 72 0.0016 23.7 4.3 18 6-24 55-72 (287)
329 PF15566 Imm18: Immunity prote 39.1 54 0.0012 17.2 2.6 31 36-66 4-34 (52)
330 PF07380 Pneumo_M2: Pneumoviru 38.9 45 0.00098 19.1 2.5 23 31-53 57-79 (89)
331 PF03575 Peptidase_S51: Peptid 38.8 22 0.00047 23.4 1.6 15 53-67 68-82 (154)
332 PF01012 ETF: Electron transfe 38.5 94 0.002 20.5 4.6 41 32-73 71-112 (164)
333 cd01014 nicotinamidase_related 38.5 61 0.0013 21.2 3.7 49 41-89 88-136 (155)
334 TIGR02354 thiF_fam2 thiamine b 38.0 97 0.0021 21.5 4.7 40 45-87 14-54 (200)
335 PF00484 Pro_CA: Carbonic anhy 37.7 91 0.002 20.3 4.4 35 37-71 39-73 (153)
336 cd07215 Pat17_PNPLA8_PNPLA9_li 37.4 25 0.00055 26.5 1.9 17 56-72 43-59 (329)
337 PF05705 DUF829: Eukaryotic pr 37.3 1.4E+02 0.0029 21.2 5.5 53 35-87 46-111 (240)
338 PRK10768 ribonucleoside hydrol 36.9 1.4E+02 0.0031 22.3 5.7 48 38-88 102-153 (304)
339 PLN00416 carbonate dehydratase 36.7 42 0.00092 24.5 2.8 31 41-71 128-158 (258)
340 cd02653 nuc_hydro_3 NH_3: A su 36.6 1.7E+02 0.0036 22.2 6.0 48 38-89 100-151 (320)
341 COG0373 HemA Glutamyl-tRNA red 36.1 1.4E+02 0.0031 23.6 5.6 52 32-86 157-210 (414)
342 PF12083 DUF3560: Domain of un 36.0 37 0.0008 21.7 2.2 25 38-62 27-51 (126)
343 PRK15219 carbonic anhydrase; P 35.9 44 0.00096 24.1 2.8 31 41-71 131-161 (245)
344 COG1957 URH1 Inosine-uridine n 35.4 2E+02 0.0043 21.8 6.5 53 37-91 102-157 (311)
345 COG2201 CheB Chemotaxis respon 35.3 56 0.0012 25.0 3.3 31 54-84 158-189 (350)
346 PRK14046 malate--CoA ligase su 35.0 27 0.0006 27.1 1.8 31 53-83 119-149 (392)
347 cd01012 YcaC_related YcaC rela 35.0 1E+02 0.0022 20.3 4.3 49 41-89 77-125 (157)
348 PRK06193 hypothetical protein; 34.8 72 0.0016 22.4 3.6 29 34-62 135-165 (206)
349 PLN03006 carbonate dehydratase 34.6 62 0.0013 24.2 3.4 31 40-70 159-189 (301)
350 PF08197 TT_ORF2a: pORF2a trun 34.5 34 0.00073 17.1 1.4 14 7-20 35-48 (49)
351 TIGR00583 mre11 DNA repair pro 34.3 29 0.00064 27.1 1.8 17 183-199 108-124 (405)
352 cd05007 SIS_Etherase N-acetylm 33.7 1.4E+02 0.0031 21.7 5.2 39 39-77 35-74 (257)
353 PRK15416 lipopolysaccharide co 33.7 52 0.0011 23.0 2.8 23 43-65 142-164 (201)
354 PRK13512 coenzyme A disulfide 33.7 91 0.002 24.6 4.5 42 43-87 139-180 (438)
355 COG0541 Ffh Signal recognition 33.6 2.3E+02 0.0049 22.7 6.3 66 5-85 181-248 (451)
356 KOG2248 3'-5' exonuclease [Rep 33.1 52 0.0011 25.6 2.9 46 40-87 280-326 (380)
357 COG1073 Hydrolases of the alph 32.8 26 0.00056 25.2 1.3 34 53-86 132-167 (299)
358 PF13289 SIR2_2: SIR2-like dom 32.4 1.1E+02 0.0025 19.3 4.2 17 50-66 84-100 (143)
359 PRK08671 methionine aminopepti 32.3 49 0.0011 24.5 2.7 32 33-64 124-156 (291)
360 TIGR03169 Nterm_to_SelD pyridi 32.2 62 0.0013 24.6 3.3 34 54-87 1-34 (364)
361 cd01853 Toc34_like Toc34-like 32.1 86 0.0019 22.7 3.8 17 5-21 77-93 (249)
362 PRK10437 carbonic anhydrase; P 32.0 59 0.0013 23.1 2.8 31 41-71 79-109 (220)
363 PRK07281 methionine aminopepti 31.8 65 0.0014 23.9 3.2 29 35-63 173-202 (286)
364 PF00857 Isochorismatase: Isoc 31.6 74 0.0016 21.1 3.3 49 41-89 101-149 (174)
365 COG0288 CynT Carbonic anhydras 31.6 59 0.0013 22.8 2.8 36 38-73 77-112 (207)
366 KOG2316 Predicted ATPase (PP-l 31.4 25 0.00054 24.9 0.9 63 18-85 74-136 (277)
367 cd02652 nuc_hydro_2 NH_2: A su 30.7 1.3E+02 0.0028 22.5 4.5 49 38-88 94-153 (293)
368 COG2390 DeoR Transcriptional r 30.2 1.6E+02 0.0035 22.4 5.0 53 33-86 94-146 (321)
369 cd00431 cysteine_hydrolases Cy 30.2 1.1E+02 0.0024 19.9 3.9 46 42-87 100-145 (161)
370 PRK01710 murD UDP-N-acetylmura 29.9 91 0.002 24.8 3.9 34 41-74 3-36 (458)
371 PF06857 ACP: Malonate decarbo 29.8 86 0.0019 18.5 2.9 32 37-68 42-73 (87)
372 PRK05441 murQ N-acetylmuramic 29.8 1.8E+02 0.0038 21.8 5.2 32 43-74 52-84 (299)
373 cd01088 MetAP2 Methionine Amin 29.6 56 0.0012 24.2 2.6 32 33-64 123-155 (291)
374 PRK10431 N-acetylmuramoyl-l-al 29.4 1.5E+02 0.0032 23.8 4.9 16 8-24 192-207 (445)
375 PLN03019 carbonic anhydrase 29.3 1.2E+02 0.0027 23.0 4.2 30 41-70 203-232 (330)
376 cd01080 NAD_bind_m-THF_DH_Cycl 29.2 1.1E+02 0.0023 20.7 3.6 41 33-73 25-66 (168)
377 PF10561 UPF0565: Uncharacteri 28.9 56 0.0012 24.5 2.4 21 53-73 193-213 (303)
378 PRK01581 speE spermidine synth 28.9 1.5E+02 0.0032 23.1 4.6 48 39-89 136-185 (374)
379 COG0420 SbcD DNA repair exonuc 28.8 38 0.00082 26.2 1.7 15 183-197 73-87 (390)
380 PF03681 UPF0150: Uncharacteri 28.7 45 0.00098 16.7 1.5 33 5-49 12-44 (48)
381 PLN02717 uridine nucleosidase 28.7 2.6E+02 0.0056 21.1 6.5 50 38-89 103-155 (316)
382 PF02972 Phycoerythr_ab: Phyco 28.6 50 0.0011 17.5 1.5 12 9-20 5-16 (57)
383 cd01086 MetAP1 Methionine Amin 28.6 76 0.0016 22.5 3.1 33 34-66 132-165 (238)
384 PRK08644 thiamine biosynthesis 28.4 1.7E+02 0.0038 20.5 4.7 38 47-87 23-61 (212)
385 cd01015 CSHase N-carbamoylsarc 28.2 1.2E+02 0.0027 20.4 3.9 48 41-88 103-150 (179)
386 cd03129 GAT1_Peptidase_E_like 28.2 74 0.0016 22.1 2.9 24 46-70 107-130 (210)
387 PF11009 DUF2847: Protein of u 27.8 1.5E+02 0.0033 18.2 3.9 34 40-73 7-40 (105)
388 PLN03014 carbonic anhydrase 27.6 1.5E+02 0.0032 22.8 4.4 30 41-70 208-237 (347)
389 cd00884 beta_CA_cladeB Carboni 27.4 1.1E+02 0.0024 21.2 3.5 32 40-71 74-105 (190)
390 cd03146 GAT1_Peptidase_E Type 27.4 67 0.0014 22.5 2.5 26 45-70 105-130 (212)
391 TIGR02356 adenyl_thiF thiazole 27.4 1.9E+02 0.004 20.1 4.7 37 48-87 17-54 (202)
392 COG1246 ArgA N-acetylglutamate 27.1 1.4E+02 0.0031 19.8 3.8 24 37-60 84-107 (153)
393 PF01221 Dynein_light: Dynein 27.1 1E+02 0.0022 18.1 2.9 32 35-66 34-66 (89)
394 cd00286 Tubulin_FtsZ Tubulin/F 27.1 2.2E+02 0.0047 21.5 5.4 23 42-64 78-100 (328)
395 KOG1202 Animal-type fatty acid 27.1 52 0.0011 30.1 2.2 23 42-64 571-593 (2376)
396 PF02633 Creatininase: Creatin 26.9 1.9E+02 0.0041 20.6 4.8 41 33-73 78-121 (237)
397 COG1092 Predicted SAM-dependen 26.9 1.7E+02 0.0038 23.0 4.8 50 5-62 289-338 (393)
398 KOG2730 Methylase [General fun 26.8 57 0.0012 23.3 2.0 46 31-76 73-118 (263)
399 TIGR00959 ffh signal recogniti 26.8 3.3E+02 0.0072 21.7 6.4 16 4-19 180-195 (428)
400 PLN02154 carbonic anhydrase 26.7 1.2E+02 0.0026 22.6 3.7 32 40-71 153-184 (290)
401 cd01013 isochorismatase Isocho 26.7 1.1E+02 0.0025 21.1 3.6 48 41-88 131-178 (203)
402 PRK12318 methionine aminopepti 26.7 77 0.0017 23.6 2.8 29 35-63 183-212 (291)
403 PRK14194 bifunctional 5,10-met 26.6 1.1E+02 0.0024 23.0 3.6 32 42-73 145-182 (301)
404 PRK10443 rihA ribonucleoside h 26.4 2.4E+02 0.0052 21.2 5.4 48 39-89 104-155 (311)
405 PRK13253 citrate lyase subunit 26.0 1.2E+02 0.0025 18.3 3.0 32 37-68 43-74 (92)
406 PRK09330 cell division protein 25.7 1.1E+02 0.0023 24.0 3.5 29 38-66 83-111 (384)
407 cd02649 nuc_hydro_CeIAG nuc_hy 25.5 2.9E+02 0.0062 20.8 5.7 48 39-89 104-155 (306)
408 PF02044 Bombesin: Bombesin-li 25.3 13 0.00029 13.4 -0.6 6 58-63 6-11 (14)
409 cd06583 PGRP Peptidoglycan rec 25.1 1.5E+02 0.0033 18.2 3.7 32 33-64 85-117 (126)
410 COG2885 OmpA Outer membrane pr 24.8 1.1E+02 0.0025 20.8 3.3 27 35-61 97-123 (190)
411 cd03378 beta_CA_cladeC Carboni 24.4 1.7E+02 0.0037 19.5 3.8 30 40-69 79-108 (154)
412 COG3007 Uncharacterized paraqu 24.3 75 0.0016 23.8 2.3 25 51-75 40-64 (398)
413 cd01011 nicotinamidase Nicotin 24.2 2E+02 0.0042 19.8 4.4 48 41-88 127-174 (196)
414 PRK11609 nicotinamidase/pyrazi 24.2 1.8E+02 0.0038 20.3 4.2 48 41-88 131-178 (212)
415 TIGR02690 resist_ArsH arsenica 24.1 1.4E+02 0.003 21.3 3.6 10 6-15 57-66 (219)
416 PRK06731 flhF flagellar biosyn 24.1 3E+02 0.0065 20.3 7.3 64 6-84 154-219 (270)
417 PF01494 FAD_binding_3: FAD bi 24.0 83 0.0018 23.4 2.7 31 54-87 3-33 (356)
418 PF10070 DUF2309: Uncharacteri 24.0 1.3E+02 0.0028 26.2 3.9 31 32-62 475-510 (788)
419 KOG1336 Monodehydroascorbate/f 24.0 1.2E+02 0.0027 24.3 3.5 47 39-87 199-245 (478)
420 TIGR00501 met_pdase_II methion 23.9 80 0.0017 23.5 2.5 31 33-63 127-158 (295)
421 PRK05716 methionine aminopepti 23.5 97 0.0021 22.2 2.9 31 35-65 143-174 (252)
422 PRK15118 universal stress glob 23.3 48 0.001 21.1 1.2 19 178-196 124-142 (144)
423 COG2236 Predicted phosphoribos 23.0 1.7E+02 0.0038 20.3 3.8 54 32-86 5-61 (192)
424 PLN02925 4-hydroxy-3-methylbut 23.0 1.9E+02 0.0041 24.7 4.5 39 9-59 632-670 (733)
425 PF03405 FA_desaturase_2: Fatt 22.9 94 0.002 23.7 2.7 68 12-81 231-305 (330)
426 PF01973 MAF_flag10: Protein o 22.8 1.3E+02 0.0029 20.0 3.3 27 37-63 140-166 (170)
427 PHA02595 tk.4 hypothetical pro 22.6 57 0.0012 21.6 1.4 18 60-77 29-46 (154)
428 PRK13018 cell division protein 22.6 1.5E+02 0.0032 23.2 3.7 27 41-67 101-127 (378)
429 TIGR03127 RuMP_HxlB 6-phospho 22.6 2.4E+02 0.0052 18.9 4.5 32 43-74 20-52 (179)
430 COG0813 DeoD Purine-nucleoside 22.5 1.6E+02 0.0036 21.0 3.6 37 52-90 55-95 (236)
431 TIGR00500 met_pdase_I methioni 22.5 89 0.0019 22.3 2.5 31 35-65 141-172 (247)
432 PF10137 TIR-like: Predicted n 22.4 2.2E+02 0.0048 18.2 4.2 50 37-87 10-60 (125)
433 COG3023 ampD N-acetyl-anhydrom 22.3 1.1E+02 0.0024 22.2 2.8 29 34-62 126-155 (257)
434 KOG1578 Predicted carbonic anh 22.2 67 0.0014 23.6 1.7 31 41-71 142-172 (276)
435 COG3340 PepE Peptidase E [Amin 22.0 32 0.0007 24.2 0.2 17 53-69 117-133 (224)
436 PF07578 LAB_N: Lipid A Biosyn 22.0 16 0.00034 20.7 -1.1 19 51-69 50-68 (72)
437 PF02353 CMAS: Mycolic acid cy 22.0 1.5E+02 0.0033 21.8 3.6 44 41-85 49-95 (273)
438 PRK14567 triosephosphate isome 21.8 78 0.0017 23.1 2.0 26 32-62 70-95 (253)
439 TIGR00065 ftsZ cell division p 21.8 1.4E+02 0.003 23.0 3.4 26 41-66 90-115 (349)
440 smart00500 SFM Splicing Factor 21.8 1.3E+02 0.0028 15.2 2.3 22 42-64 5-26 (44)
441 PF07992 Pyr_redox_2: Pyridine 21.8 1E+02 0.0022 20.8 2.7 29 54-85 1-29 (201)
442 PF07521 RMMBL: RNA-metabolisi 21.8 1.2E+02 0.0026 14.9 2.9 18 41-58 21-38 (43)
443 PRK13938 phosphoheptose isomer 21.8 2.9E+02 0.0062 19.2 5.2 24 52-75 45-68 (196)
444 PRK08223 hypothetical protein; 21.8 2.6E+02 0.0056 20.9 4.7 39 47-88 22-61 (287)
445 PF01339 CheB_methylest: CheB 21.7 65 0.0014 22.0 1.6 30 55-84 1-31 (182)
446 KOG2697 Histidinol dehydrogena 21.7 1.8E+02 0.0039 21.9 3.8 54 7-65 233-286 (446)
447 PRK13690 hypothetical protein; 21.6 2.4E+02 0.0053 19.3 4.1 30 37-66 4-39 (184)
448 PRK09177 xanthine-guanine phos 21.5 1.7E+02 0.0037 19.4 3.5 42 33-74 9-52 (156)
449 PF15061 DUF4538: Domain of un 21.5 76 0.0016 17.1 1.4 16 62-77 11-26 (58)
450 PRK05282 (alpha)-aspartyl dipe 21.5 88 0.0019 22.5 2.2 19 53-71 112-130 (233)
451 cd03379 beta_CA_cladeD Carboni 21.4 1.1E+02 0.0025 19.8 2.6 31 38-68 41-71 (142)
452 PLN02962 hydroxyacylglutathion 21.4 1.8E+02 0.004 21.1 3.9 29 34-62 165-193 (251)
453 PF01488 Shikimate_DH: Shikima 21.4 93 0.002 19.9 2.2 38 48-87 8-45 (135)
454 COG1252 Ndh NADH dehydrogenase 21.3 1.4E+02 0.0031 23.5 3.4 35 53-88 4-38 (405)
455 cd02650 nuc_hydro_CaPnhB NH_hy 21.2 3.6E+02 0.0078 20.1 6.6 48 39-89 102-153 (304)
456 TIGR00419 tim triosephosphate 21.1 80 0.0017 22.1 1.9 25 33-62 67-91 (205)
457 TIGR03385 CoA_CoA_reduc CoA-di 21.0 1.9E+02 0.0041 22.7 4.2 42 42-86 127-168 (427)
458 smart00864 Tubulin Tubulin/Fts 20.9 1.4E+02 0.0031 20.4 3.2 24 42-65 72-95 (192)
459 PRK00090 bioD dithiobiotin syn 20.9 2.8E+02 0.006 19.3 4.7 14 3-16 100-113 (222)
460 cd00311 TIM Triosephosphate is 20.8 85 0.0018 22.7 2.1 24 33-61 70-93 (242)
461 PRK07411 hypothetical protein; 20.8 1.8E+02 0.004 22.7 4.0 37 49-88 35-72 (390)
462 PRK10116 universal stress prot 20.7 66 0.0014 20.3 1.4 19 178-196 124-142 (142)
463 PF00691 OmpA: OmpA family; I 20.6 1.9E+02 0.0042 16.8 3.9 27 37-63 11-41 (97)
464 cd03145 GAT1_cyanophycinase Ty 20.6 1.1E+02 0.0023 21.6 2.5 19 53-71 116-134 (217)
465 COG1352 CheR Methylase of chem 20.6 1.9E+02 0.0041 21.3 3.8 29 34-62 215-243 (268)
466 PF07812 TfuA: TfuA-like prote 20.5 2.1E+02 0.0045 18.2 3.4 27 46-72 15-41 (120)
467 PF14582 Metallophos_3: Metall 20.5 44 0.00095 24.0 0.6 18 181-198 85-102 (255)
468 cd00952 CHBPH_aldolase Trans-o 20.4 3.8E+02 0.0082 20.1 5.6 57 32-88 56-114 (309)
469 TIGR02355 moeB molybdopterin s 20.2 2.1E+02 0.0046 20.6 4.0 39 48-89 20-59 (240)
470 PF08799 PRP4: pre-mRNA proces 20.1 38 0.00082 15.5 0.1 18 46-64 4-21 (30)
471 PF07994 NAD_binding_5: Myo-in 20.0 1.7E+02 0.0038 21.9 3.6 30 35-64 130-160 (295)
472 TIGR01608 citD citrate lyase a 20.0 2.2E+02 0.0047 17.1 3.5 31 39-69 45-75 (92)
473 PRK05665 amidotransferase; Pro 20.0 2E+02 0.0043 20.7 3.8 38 34-71 71-108 (240)
474 PTZ00387 epsilon tubulin; Prov 20.0 2.2E+02 0.0048 23.0 4.3 28 37-64 115-142 (465)
475 cd02188 gamma_tubulin Gamma-tu 20.0 3.4E+02 0.0075 21.6 5.4 26 54-79 131-164 (431)
No 1
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=2.8e-31 Score=193.57 Aligned_cols=197 Identities=70% Similarity=1.175 Sum_probs=130.2
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|++.|+|+++|+||||.|+.+..........++++++++++.+++++++.++++++||||||++++.+|.++|++|+++
T Consensus 51 ~L~~~~~vi~~DlpG~G~S~~~~~~~~~~~~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~l 130 (294)
T PLN02824 51 VLAKSHRVYAIDLLGYGYSDKPNPRSAPPNSFYTFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGV 130 (294)
T ss_pred HHHhCCeEEEEcCCCCCCCCCCccccccccccCCHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEE
Confidence 47788999999999999999765322211246899999999999999999999999999999999999999999999999
Q ss_pred eEeccchhhhhccCCCCCCChhhHHHHHHHhchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcHHHHHHHhcccCCCCH
Q 028885 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGA 161 (202)
Q Consensus 82 vli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (202)
|++++..........+.........+...+........+.........++..+...+......+++..+.+.........
T Consensus 131 ili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (294)
T PLN02824 131 MLINISLRGLHIKKQPWLGRPFIKAFQNLLRETAVGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLEPGA 210 (294)
T ss_pred EEECCCcccccccccchhhhHHHHHHHHHHhchhHHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCCchH
Confidence 99998643221111111112222223333322222222333223334445555544555455666666666655555554
Q ss_pred HHHHHHHHhhcCCCCccccCCCCCcceEEeecCCCCCC
Q 028885 162 ADVFLEFICYSGGPLPEELLPQVKVSFFKLDQIHNMPI 199 (202)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~p~ 199 (202)
...+..+..........+.+++|+||||+|+|++| ++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~l~~i~~P~lvi~G~~D-~~ 247 (294)
T PLN02824 211 VDVFLDFISYSGGPLPEELLPAVKCPVLIAWGEKD-PW 247 (294)
T ss_pred HHHHHHHhccccccchHHHHhhcCCCeEEEEecCC-CC
Confidence 44444444333322334668899999999999999 44
No 2
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=1.2e-27 Score=178.63 Aligned_cols=190 Identities=34% Similarity=0.559 Sum_probs=122.3
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh-Ccccccc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM-EPEICRG 80 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~-~p~~v~~ 80 (202)
.|+++|+|+++|+||||.|+.+.. ..++++.+++++.+++++++.++++||||||||.+++.++.+ +|++|++
T Consensus 110 ~L~~~~~via~Dl~G~G~S~~~~~------~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~ 183 (360)
T PLN02679 110 VLAKNYTVYAIDLLGFGASDKPPG------FSYTMETWAELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRG 183 (360)
T ss_pred HHhcCCEEEEECCCCCCCCCCCCC------ccccHHHHHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCE
Confidence 467889999999999999987652 468999999999999999999999999999999999999874 7999999
Q ss_pred eeEeccchhhhhccCC-CCCCC---hhhHHHHHHHhchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcHHHHHHHhccc
Q 028885 81 MILLNISLRMLHIKKQ-PWYGR---PLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPG 156 (202)
Q Consensus 81 lvli~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (202)
+|++++.......... .+... .....+...+..+.....++........++.++...+.++..++++..+.+....
T Consensus 184 LVLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T PLN02679 184 LVLLNCAGGMNNKAVVDDWRIKLLLPLLWLIDFLLKQRGIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPA 263 (360)
T ss_pred EEEECCccccccccccchHHHhhhcchHHHHHHHhhchhhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhc
Confidence 9999986432110000 00000 0000001111111112222222222334455555555555556777776665554
Q ss_pred CCCCHHHHHHHHHhhcCCCCccccCCCCCcceEEeecCCCC
Q 028885 157 LETGAADVFLEFICYSGGPLPEELLPQVKVSFFKLDQIHNM 197 (202)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~ 197 (202)
........+..........+..+.+++|++|||+|+|++|.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PtLii~G~~D~ 304 (360)
T PLN02679 264 DDEGALDAFVSIVTGPPGPNPIKLIPRISLPILVLWGDQDP 304 (360)
T ss_pred cCCChHHHHHHHHhcCCCCCHHHHhhhcCCCEEEEEeCCCC
Confidence 44554555444433222233345688999999999999993
No 3
>PLN02578 hydrolase
Probab=99.94 E-value=1.3e-25 Score=167.33 Aligned_cols=188 Identities=27% Similarity=0.449 Sum_probs=120.0
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+. ..++.+.+++++.+++++++.++++++||||||.+++.+|.++|++|+++
T Consensus 108 ~l~~~~~v~~~D~~G~G~S~~~~-------~~~~~~~~a~~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l 180 (354)
T PLN02578 108 ELAKKYKVYALDLLGFGWSDKAL-------IEYDAMVWRDQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGV 180 (354)
T ss_pred HHhcCCEEEEECCCCCCCCCCcc-------cccCHHHHHHHHHHHHHHhccCCeEEEEECHHHHHHHHHHHhChHhcceE
Confidence 46788999999999999998865 46899999999999999999999999999999999999999999999999
Q ss_pred eEeccchhhhhccCCCCC----CCh-----hhHHHHHHHhchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcHHHHHHH
Q 028885 82 ILLNISLRMLHIKKQPWY----GRP-----LIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKI 152 (202)
Q Consensus 82 vli~~~~~~~~~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (202)
|++++............. ... ........+... .....+........++......+.+....++...+..
T Consensus 181 vLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (354)
T PLN02578 181 ALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLKEWFQRV-VLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESI 259 (354)
T ss_pred EEECCCccccccccccccccccccchhhHHHhHHHHHHHHHH-HHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHH
Confidence 999986442211110000 000 011111111100 0001111112223344444444555555566666665
Q ss_pred hcccCCCCHHHHHHHHHhh----cCCCCccccCCCCCcceEEeecCCCC
Q 028885 153 LQPGLETGAADVFLEFICY----SGGPLPEELLPQVKVSFFKLDQIHNM 197 (202)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~i~~Pvl~i~G~~D~ 197 (202)
......+.....+...... .......+.+++++||+++|+|++|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~PvLiI~G~~D~ 308 (354)
T PLN02578 260 TEPAADPNAGEVYYRLMSRFLFNQSRYTLDSLLSKLSCPLLLLWGDLDP 308 (354)
T ss_pred HhcccCCchHHHHHHHHHHHhcCCCCCCHHHHhhcCCCCEEEEEeCCCC
Confidence 5544455444444433221 12233456788999999999999993
No 4
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.94 E-value=7.1e-26 Score=163.74 Aligned_cols=81 Identities=27% Similarity=0.272 Sum_probs=75.1
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+. ..++++++++++.+++++++.++++||||||||.+++.+|.++|++|+++
T Consensus 47 ~L~~~~~vi~~Dl~G~G~S~~~~-------~~~~~~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~l 119 (276)
T TIGR02240 47 ALDPDLEVIAFDVPGVGGSSTPR-------HPYRFPGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPERCKKL 119 (276)
T ss_pred HhccCceEEEECCCCCCCCCCCC-------CcCcHHHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHHhhhe
Confidence 57789999999999999998654 36899999999999999999999999999999999999999999999999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|++++...
T Consensus 120 vl~~~~~~ 127 (276)
T TIGR02240 120 ILAATAAG 127 (276)
T ss_pred EEeccCCc
Confidence 99999754
No 5
>PRK03592 haloalkane dehalogenase; Provisional
Probab=99.94 E-value=1.4e-25 Score=163.68 Aligned_cols=80 Identities=30% Similarity=0.463 Sum_probs=74.2
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|++.|+|+++|+||||.|+.+. ..++.+++++|+.+++++++.++++++||||||.+++.++.++|++|+++
T Consensus 49 ~L~~~~~via~D~~G~G~S~~~~-------~~~~~~~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l 121 (295)
T PRK03592 49 HLAGLGRCLAPDLIGMGASDKPD-------IDYTFADHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVRGI 121 (295)
T ss_pred HHhhCCEEEEEcCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhheeEE
Confidence 46778899999999999998865 35899999999999999999999999999999999999999999999999
Q ss_pred eEeccch
Q 028885 82 ILLNISL 88 (202)
Q Consensus 82 vli~~~~ 88 (202)
|++++..
T Consensus 122 il~~~~~ 128 (295)
T PRK03592 122 AFMEAIV 128 (295)
T ss_pred EEECCCC
Confidence 9999853
No 6
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=99.93 E-value=2.3e-25 Score=157.54 Aligned_cols=83 Identities=29% Similarity=0.488 Sum_probs=77.4
Q ss_pred CcCCc-ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 2 VLAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 2 ~L~~~-~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
.|+.. |+|+|+|+||+|.|+.|.. ...||...++.|+..++++++.++++++||+||+++|+++|..+|++|++
T Consensus 66 ~la~~~~rviA~DlrGyG~Sd~P~~-----~~~Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~ 140 (322)
T KOG4178|consen 66 GLASRGYRVIAPDLRGYGFSDAPPH-----ISEYTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDG 140 (322)
T ss_pred hhhhcceEEEecCCCCCCCCCCCCC-----cceeeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhhcce
Confidence 45555 9999999999999999885 47899999999999999999999999999999999999999999999999
Q ss_pred eeEeccchh
Q 028885 81 MILLNISLR 89 (202)
Q Consensus 81 lvli~~~~~ 89 (202)
+|.++....
T Consensus 141 lv~~nv~~~ 149 (322)
T KOG4178|consen 141 LVTLNVPFP 149 (322)
T ss_pred EEEecCCCC
Confidence 999998765
No 7
>PRK06489 hypothetical protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=156.89 Aligned_cols=86 Identities=16% Similarity=0.156 Sum_probs=70.8
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHhcCCceE-EEecChhhHHHHHHHHhCcccccc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFC-KDVVKDQAF-FICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~~-lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
++++|+||++|+||||.|+.+..........++++++++++.+++ +++++++++ ++||||||++++.+|.++|++|++
T Consensus 102 ~~~~~~Via~Dl~GhG~S~~p~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~ 181 (360)
T PRK06489 102 DASKYFIILPDGIGHGKSSKPSDGLRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDA 181 (360)
T ss_pred cccCCEEEEeCCCCCCCCCCCCcCCCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhhe
Confidence 367899999999999999875421000012589999999988854 889999985 899999999999999999999999
Q ss_pred eeEeccch
Q 028885 81 MILLNISL 88 (202)
Q Consensus 81 lvli~~~~ 88 (202)
+|++++..
T Consensus 182 LVLi~s~~ 189 (360)
T PRK06489 182 LMPMASQP 189 (360)
T ss_pred eeeeccCc
Confidence 99998853
No 8
>PRK10349 carboxylesterase BioH; Provisional
Probab=99.91 E-value=1.4e-23 Score=150.29 Aligned_cols=76 Identities=25% Similarity=0.338 Sum_probs=64.6
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+... .++.+++++++. ++..+++++|||||||.+++.+|.++|++|+++
T Consensus 35 ~L~~~~~vi~~Dl~G~G~S~~~~--------~~~~~~~~~~l~----~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~l 102 (256)
T PRK10349 35 ELSSHFTLHLVDLPGFGRSRGFG--------ALSLADMAEAVL----QQAPDKAIWLGWSLGGLVASQIALTHPERVQAL 102 (256)
T ss_pred HHhcCCEEEEecCCCCCCCCCCC--------CCCHHHHHHHHH----hcCCCCeEEEEECHHHHHHHHHHHhChHhhheE
Confidence 46788999999999999997533 367777777665 356789999999999999999999999999999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|++++...
T Consensus 103 ili~~~~~ 110 (256)
T PRK10349 103 VTVASSPC 110 (256)
T ss_pred EEecCccc
Confidence 99998543
No 9
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.91 E-value=3.4e-23 Score=146.98 Aligned_cols=78 Identities=19% Similarity=0.121 Sum_probs=69.7
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccc-ccc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI-CRG 80 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~-v~~ 80 (202)
.|+ +|+|+++|+||||.|+.+. ..+++.+++++.+++++++.++++++||||||.+++.+|.++|+. |++
T Consensus 24 ~l~-~~~vi~~D~~G~G~S~~~~--------~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~ 94 (242)
T PRK11126 24 ALP-DYPRLYIDLPGHGGSAAIS--------VDGFADVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLCG 94 (242)
T ss_pred HcC-CCCEEEecCCCCCCCCCcc--------ccCHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcccccE
Confidence 454 6999999999999998755 248999999999999999999999999999999999999999765 999
Q ss_pred eeEeccch
Q 028885 81 MILLNISL 88 (202)
Q Consensus 81 lvli~~~~ 88 (202)
+|++++..
T Consensus 95 lvl~~~~~ 102 (242)
T PRK11126 95 LIVEGGNP 102 (242)
T ss_pred EEEeCCCC
Confidence 99998753
No 10
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=99.91 E-value=3.8e-23 Score=149.48 Aligned_cols=82 Identities=28% Similarity=0.343 Sum_probs=74.9
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+.. ..++++.+++++.+++++++.++++++||||||++++.++.++|++++++
T Consensus 50 ~l~~~~~vi~~D~~G~G~S~~~~~------~~~~~~~~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 123 (278)
T TIGR03056 50 PLARSFRVVAPDLPGHGFTRAPFR------FRFTLPSMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPRMV 123 (278)
T ss_pred HHhhCcEEEeecCCCCCCCCCccc------cCCCHHHHHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCCcccceE
Confidence 577889999999999999987662 46899999999999999999899999999999999999999999999999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|++++...
T Consensus 124 v~~~~~~~ 131 (278)
T TIGR03056 124 VGINAALM 131 (278)
T ss_pred EEEcCccc
Confidence 99998643
No 11
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.91 E-value=5e-23 Score=150.69 Aligned_cols=81 Identities=31% Similarity=0.599 Sum_probs=73.1
Q ss_pred CcC-CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 2 VLA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 2 ~L~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
.|+ .+|+|+++|+||||.|+.+.. ...++++++++++.+++++++.++++++||||||.+++.+|.++|++|++
T Consensus 68 ~L~~~gy~vi~~Dl~G~G~S~~~~~-----~~~~~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~ 142 (302)
T PRK00870 68 ILAAAGHRVIAPDLIGFGRSDKPTR-----REDYTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFAR 142 (302)
T ss_pred HHHhCCCEEEEECCCCCCCCCCCCC-----cccCCHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeE
Confidence 465 479999999999999987542 24689999999999999999999999999999999999999999999999
Q ss_pred eeEeccc
Q 028885 81 MILLNIS 87 (202)
Q Consensus 81 lvli~~~ 87 (202)
+|++++.
T Consensus 143 lvl~~~~ 149 (302)
T PRK00870 143 LVVANTG 149 (302)
T ss_pred EEEeCCC
Confidence 9999975
No 12
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.91 E-value=3.4e-23 Score=147.17 Aligned_cols=89 Identities=25% Similarity=0.355 Sum_probs=76.8
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|++.++|+++|++|+|.|+.|.=. .+..-....+++-+++.....++++.+|+|||+||.++..||.+||++|++|
T Consensus 112 ~La~~~~vyaiDllG~G~SSRP~F~---~d~~~~e~~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~kL 188 (365)
T KOG4409|consen 112 DLAKIRNVYAIDLLGFGRSSRPKFS---IDPTTAEKEFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKL 188 (365)
T ss_pred hhhhcCceEEecccCCCCCCCCCCC---CCcccchHHHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhceE
Confidence 5788999999999999999987621 1233345578899999999999999999999999999999999999999999
Q ss_pred eEeccchhhhhc
Q 028885 82 ILLNISLRMLHI 93 (202)
Q Consensus 82 vli~~~~~~~~~ 93 (202)
||++|.......
T Consensus 189 iLvsP~Gf~~~~ 200 (365)
T KOG4409|consen 189 ILVSPWGFPEKP 200 (365)
T ss_pred EEecccccccCC
Confidence 999999776643
No 13
>PLN02965 Probable pheophorbidase
Probab=99.91 E-value=1.9e-23 Score=149.36 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=72.8
Q ss_pred Cc-CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC-CceEEEecChhhHHHHHHHHhCccccc
Q 028885 2 VL-AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-DQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 2 ~L-~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
.| +.+|+|+++|+||||.|+.+.. ..++.+++++|+.+++++++. +++++|||||||.+++.++.++|++|+
T Consensus 25 ~L~~~~~~via~Dl~G~G~S~~~~~------~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~ 98 (255)
T PLN02965 25 LLDAAGFKSTCVDLTGAGISLTDSN------TVSSSDQYNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALCKFTDKIS 98 (255)
T ss_pred HHhhCCceEEEecCCcCCCCCCCcc------ccCCHHHHHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHhCchhee
Confidence 35 5679999999999999986542 468899999999999999987 599999999999999999999999999
Q ss_pred ceeEeccch
Q 028885 80 GMILLNISL 88 (202)
Q Consensus 80 ~lvli~~~~ 88 (202)
++|++++..
T Consensus 99 ~lvl~~~~~ 107 (255)
T PLN02965 99 MAIYVAAAM 107 (255)
T ss_pred EEEEEcccc
Confidence 999999863
No 14
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=99.90 E-value=1.1e-22 Score=147.46 Aligned_cols=79 Identities=22% Similarity=0.214 Sum_probs=67.8
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
+++|+|+++|+||||.|+..... ...+. .+++++.+++++++.++++++||||||.+++.++.++|++|+++|+
T Consensus 58 ~~~~~vi~~D~~G~G~S~~~~~~-----~~~~~-~~~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl 131 (282)
T TIGR03343 58 DAGYRVILKDSPGFNKSDAVVMD-----EQRGL-VNARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGKLIL 131 (282)
T ss_pred hCCCEEEEECCCCCCCCCCCcCc-----ccccc-hhHHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhChHhhceEEE
Confidence 45799999999999999875420 12222 5789999999999999999999999999999999999999999999
Q ss_pred eccch
Q 028885 84 LNISL 88 (202)
Q Consensus 84 i~~~~ 88 (202)
+++..
T Consensus 132 ~~~~~ 136 (282)
T TIGR03343 132 MGPGG 136 (282)
T ss_pred ECCCC
Confidence 99863
No 15
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.90 E-value=1.9e-22 Score=144.18 Aligned_cols=78 Identities=21% Similarity=0.374 Sum_probs=72.2
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+. .++++++++|+.+++++++.++++++||||||.+++.+|.++|++|+++
T Consensus 38 ~l~~~~~vi~~D~~G~G~s~~~~--------~~~~~~~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~l 109 (255)
T PRK10673 38 DLVNDHDIIQVDMRNHGLSPRDP--------VMNYPAMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKL 109 (255)
T ss_pred HHhhCCeEEEECCCCCCCCCCCC--------CCCHHHHHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHhCHhhcceE
Confidence 46788999999999999998644 4799999999999999999999999999999999999999999999999
Q ss_pred eEeccc
Q 028885 82 ILLNIS 87 (202)
Q Consensus 82 vli~~~ 87 (202)
|++++.
T Consensus 110 vli~~~ 115 (255)
T PRK10673 110 VAIDIA 115 (255)
T ss_pred EEEecC
Confidence 999864
No 16
>PRK07581 hypothetical protein; Validated
Probab=99.90 E-value=1e-22 Score=151.28 Aligned_cols=83 Identities=14% Similarity=0.178 Sum_probs=65.9
Q ss_pred CcC-CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHH-----HHHHHHHH----HHHHhcCCc-eEEEecChhhHHHHHH
Q 028885 2 VLA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFE-----TWASQLND----FCKDVVKDQ-AFFICNSIGGLVGLQA 70 (202)
Q Consensus 2 ~L~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~-----~~~~~l~~----~~~~l~~~~-~~lvG~S~Gg~~a~~~ 70 (202)
.|. ++|+||++|+||||.|+.+... ...++.+ .+++++.+ +++++++++ ++||||||||++++.+
T Consensus 66 ~l~~~~~~vi~~D~~G~G~S~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~ 141 (339)
T PRK07581 66 ALDPEKYFIIIPNMFGNGLSSSPSNT----PAPFNAARFPHVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHW 141 (339)
T ss_pred ccCcCceEEEEecCCCCCCCCCCCCC----CCCCCCCCCCceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHH
Confidence 464 5799999999999999865421 0123333 25566655 778899999 5899999999999999
Q ss_pred HHhCcccccceeEeccch
Q 028885 71 AVMEPEICRGMILLNISL 88 (202)
Q Consensus 71 a~~~p~~v~~lvli~~~~ 88 (202)
|.+||++|+++|++++..
T Consensus 142 a~~~P~~V~~Lvli~~~~ 159 (339)
T PRK07581 142 AVRYPDMVERAAPIAGTA 159 (339)
T ss_pred HHHCHHHHhhheeeecCC
Confidence 999999999999998764
No 17
>PRK03204 haloalkane dehalogenase; Provisional
Probab=99.90 E-value=2.5e-22 Score=145.75 Aligned_cols=80 Identities=24% Similarity=0.414 Sum_probs=73.4
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+.. ..++.+++++++.+++++++.++++++||||||.+++.++..+|++|+++
T Consensus 56 ~l~~~~~vi~~D~~G~G~S~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~l 129 (286)
T PRK03204 56 ALRDRFRCVAPDYLGFGLSERPSG------FGYQIDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGV 129 (286)
T ss_pred HHhCCcEEEEECCCCCCCCCCCCc------cccCHHHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEE
Confidence 467789999999999999987652 46899999999999999999999999999999999999999999999999
Q ss_pred eEeccc
Q 028885 82 ILLNIS 87 (202)
Q Consensus 82 vli~~~ 87 (202)
|++++.
T Consensus 130 vl~~~~ 135 (286)
T PRK03204 130 VLGNTW 135 (286)
T ss_pred EEECcc
Confidence 998875
No 18
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=99.89 E-value=1.4e-22 Score=154.20 Aligned_cols=78 Identities=23% Similarity=0.466 Sum_probs=71.6
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH-HHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLN-DFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
.+|+|+++|+||||.|+.+.. ..++++++++++. .++++++.++++++||||||++++.+|.+||++|+++|+
T Consensus 231 ~~yrVia~Dl~G~G~S~~p~~------~~ytl~~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVL 304 (481)
T PLN03087 231 STYRLFAVDLLGFGRSPKPAD------SLYTLREHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTL 304 (481)
T ss_pred CCCEEEEECCCCCCCCcCCCC------CcCCHHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEEEE
Confidence 589999999999999987652 4689999999995 899999999999999999999999999999999999999
Q ss_pred eccch
Q 028885 84 LNISL 88 (202)
Q Consensus 84 i~~~~ 88 (202)
+++..
T Consensus 305 i~~~~ 309 (481)
T PLN03087 305 LAPPY 309 (481)
T ss_pred ECCCc
Confidence 99864
No 19
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.89 E-value=1.2e-21 Score=145.70 Aligned_cols=78 Identities=23% Similarity=0.235 Sum_probs=69.4
Q ss_pred Cc-CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCce-EEEecChhhHHHHHHHHhCccccc
Q 028885 2 VL-AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQA-FFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 2 ~L-~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~-~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
.| +++|+||++|+||||.|.. ..++.+++++|+.+++++++++++ ++|||||||++++.+|.+||++|+
T Consensus 94 ~L~~~~~~Vi~~Dl~G~g~s~~---------~~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~ 164 (343)
T PRK08775 94 ALDPARFRLLAFDFIGADGSLD---------VPIDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVR 164 (343)
T ss_pred ccCccccEEEEEeCCCCCCCCC---------CCCCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhh
Confidence 35 4789999999999998842 246889999999999999999775 799999999999999999999999
Q ss_pred ceeEeccch
Q 028885 80 GMILLNISL 88 (202)
Q Consensus 80 ~lvli~~~~ 88 (202)
++|++++..
T Consensus 165 ~LvLi~s~~ 173 (343)
T PRK08775 165 TLVVVSGAH 173 (343)
T ss_pred eEEEECccc
Confidence 999999864
No 20
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.89 E-value=1.1e-21 Score=146.46 Aligned_cols=84 Identities=27% Similarity=0.462 Sum_probs=75.4
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+.... ...++++.+++++.+++++++.++++|+|||+||++++.+|.++|++|+++
T Consensus 149 ~L~~~~~Via~DlpG~G~S~~p~~~~---~~~ys~~~~a~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~l 225 (383)
T PLN03084 149 VLSKNYHAIAFDWLGFGFSDKPQPGY---GFNYTLDEYVSSLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDKIKKL 225 (383)
T ss_pred HHhcCCEEEEECCCCCCCCCCCcccc---cccCCHHHHHHHHHHHHHHhCCCCceEEEECHHHHHHHHHHHhChHhhcEE
Confidence 47788999999999999998865310 135899999999999999999999999999999999999999999999999
Q ss_pred eEeccch
Q 028885 82 ILLNISL 88 (202)
Q Consensus 82 vli~~~~ 88 (202)
|++++..
T Consensus 226 ILi~~~~ 232 (383)
T PLN03084 226 ILLNPPL 232 (383)
T ss_pred EEECCCC
Confidence 9999864
No 21
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.89 E-value=9.3e-22 Score=140.41 Aligned_cols=81 Identities=27% Similarity=0.393 Sum_probs=73.9
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+. ...++.+++++++.+++++++.++++++||||||.+++.++.++|++|+++
T Consensus 35 ~l~~~~~vi~~D~~G~G~S~~~~------~~~~~~~~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~ 108 (257)
T TIGR03611 35 VLTQRFHVVTYDHRGTGRSPGEL------PPGYSIAHMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYPERLLSL 108 (257)
T ss_pred HHHhccEEEEEcCCCCCCCCCCC------cccCCHHHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHHChHHhHHh
Confidence 46778999999999999998754 256899999999999999999999999999999999999999999999999
Q ss_pred eEeccch
Q 028885 82 ILLNISL 88 (202)
Q Consensus 82 vli~~~~ 88 (202)
|++++..
T Consensus 109 i~~~~~~ 115 (257)
T TIGR03611 109 VLINAWS 115 (257)
T ss_pred eeecCCC
Confidence 9998753
No 22
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.88 E-value=4e-22 Score=141.52 Aligned_cols=80 Identities=29% Similarity=0.420 Sum_probs=73.0
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+. ..++.+++++++.++++.++.++++++||||||.+++.+|.++|++|+++
T Consensus 35 ~l~~~~~v~~~d~~G~G~s~~~~-------~~~~~~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~l 107 (251)
T TIGR02427 35 ALTPDFRVLRYDKRGHGLSDAPE-------GPYSIEDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRAL 107 (251)
T ss_pred HhhcccEEEEecCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHCHHHhHHH
Confidence 46788999999999999997644 46799999999999999999899999999999999999999999999999
Q ss_pred eEeccch
Q 028885 82 ILLNISL 88 (202)
Q Consensus 82 vli~~~~ 88 (202)
|++++..
T Consensus 108 i~~~~~~ 114 (251)
T TIGR02427 108 VLSNTAA 114 (251)
T ss_pred hhccCcc
Confidence 9998753
No 23
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.88 E-value=1.9e-22 Score=150.37 Aligned_cols=81 Identities=21% Similarity=0.426 Sum_probs=70.4
Q ss_pred cC-CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCC------ceEEEecChhhHHHHHHHHhCc
Q 028885 3 LA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD------QAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 3 L~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~------~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
|+ .+|+|+++|+||||.|+.+.. ...+++++++|+.++++.+..+ +++|+||||||.+++.++.++|
T Consensus 111 l~~~g~~v~~~D~~G~G~S~~~~~------~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p 184 (349)
T PLN02385 111 IASSGYGVFAMDYPGFGLSEGLHG------YIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQP 184 (349)
T ss_pred HHhCCCEEEEecCCCCCCCCCCCC------CcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCc
Confidence 44 479999999999999987542 3468999999999999887543 7999999999999999999999
Q ss_pred ccccceeEeccchh
Q 028885 76 EICRGMILLNISLR 89 (202)
Q Consensus 76 ~~v~~lvli~~~~~ 89 (202)
++|+++|+++|...
T Consensus 185 ~~v~glVLi~p~~~ 198 (349)
T PLN02385 185 NAWDGAILVAPMCK 198 (349)
T ss_pred chhhheeEeccccc
Confidence 99999999998654
No 24
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.88 E-value=4.4e-22 Score=139.21 Aligned_cols=83 Identities=29% Similarity=0.502 Sum_probs=75.8
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+.. ...++.+++++++.+++++++.++++++|||+||.+++.++.++|++|+++
T Consensus 20 ~l~~~~~v~~~d~~G~G~s~~~~~-----~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 94 (228)
T PF12697_consen 20 ALARGYRVIAFDLPGHGRSDPPPD-----YSPYSIEDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDRVKGL 94 (228)
T ss_dssp HHHTTSEEEEEECTTSTTSSSHSS-----GSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGGEEEE
T ss_pred HHhCCCEEEEEecCCccccccccc-----cCCcchhhhhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 356799999999999999998663 246899999999999999999999999999999999999999999999999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|++++...
T Consensus 95 vl~~~~~~ 102 (228)
T PF12697_consen 95 VLLSPPPP 102 (228)
T ss_dssp EEESESSS
T ss_pred eeeccccc
Confidence 99999854
No 25
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.87 E-value=5.3e-21 Score=142.66 Aligned_cols=87 Identities=23% Similarity=0.301 Sum_probs=71.2
Q ss_pred cCCcceEEEeccCC--CCCCCCCCCCC----CC-CCCCCCHHHHHHHHHHHHHHhcCCc-eEEEecChhhHHHHHHHHhC
Q 028885 3 LAKSHRVYSIDLIG--YGYSDKPNPRD----FF-DKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 3 L~~~~~v~~~D~~G--~G~S~~~~~~~----~~-~~~~~~~~~~~~~l~~~~~~l~~~~-~~lvG~S~Gg~~a~~~a~~~ 74 (202)
++++|+|+++|+|| ||.|....... .. ....++++++++++.+++++++.++ ++++||||||++++.+|.++
T Consensus 69 ~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~ 148 (351)
T TIGR01392 69 DTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDY 148 (351)
T ss_pred CCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHC
Confidence 36789999999999 56554321100 00 0135899999999999999999998 99999999999999999999
Q ss_pred cccccceeEeccchh
Q 028885 75 PEICRGMILLNISLR 89 (202)
Q Consensus 75 p~~v~~lvli~~~~~ 89 (202)
|++|+++|++++...
T Consensus 149 p~~v~~lvl~~~~~~ 163 (351)
T TIGR01392 149 PERVRAIVVLATSAR 163 (351)
T ss_pred hHhhheEEEEccCCc
Confidence 999999999998753
No 26
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.87 E-value=2.7e-21 Score=140.08 Aligned_cols=81 Identities=26% Similarity=0.476 Sum_probs=70.9
Q ss_pred CCcceEEEeccCCCCCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHhc----CCceEEEecChhhHHHHHHHHhCcccc
Q 028885 4 AKSHRVYSIDLIGYGYSDK-PNPRDFFDKPFYTFETWASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
..||.|+++|+||||.|.. .. ...-++.++.+|+.++++... ..+++++||||||.|++.++.+++..|
T Consensus 59 ~~G~~V~~~D~RGhG~S~r~~r------g~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i 132 (298)
T COG2267 59 ARGFDVYALDLRGHGRSPRGQR------GHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRI 132 (298)
T ss_pred hCCCEEEEecCCCCCCCCCCCc------CCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccc
Confidence 5689999999999999983 33 245569999999999999875 368999999999999999999999999
Q ss_pred cceeEeccchhh
Q 028885 79 RGMILLNISLRM 90 (202)
Q Consensus 79 ~~lvli~~~~~~ 90 (202)
+++||.+|....
T Consensus 133 ~~~vLssP~~~l 144 (298)
T COG2267 133 DGLVLSSPALGL 144 (298)
T ss_pred cEEEEECccccC
Confidence 999999998553
No 27
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.87 E-value=3.8e-21 Score=136.12 Aligned_cols=76 Identities=25% Similarity=0.309 Sum_probs=64.6
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+... .++++++++++.+.+ .++++++||||||.+++.++.++|++++++
T Consensus 26 ~l~~~~~vi~~d~~G~G~s~~~~--------~~~~~~~~~~~~~~~----~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 93 (245)
T TIGR01738 26 ELSAHFTLHLVDLPGHGRSRGFG--------PLSLADAAEAIAAQA----PDPAIWLGWSLGGLVALHIAATHPDRVRAL 93 (245)
T ss_pred hhccCeEEEEecCCcCccCCCCC--------CcCHHHHHHHHHHhC----CCCeEEEEEcHHHHHHHHHHHHCHHhhhee
Confidence 57788999999999999987543 467888877766543 379999999999999999999999999999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|++++...
T Consensus 94 il~~~~~~ 101 (245)
T TIGR01738 94 VTVASSPC 101 (245)
T ss_pred eEecCCcc
Confidence 99988654
No 28
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.86 E-value=1.2e-20 Score=133.78 Aligned_cols=82 Identities=32% Similarity=0.437 Sum_probs=72.9
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHH-HHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQ-LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
.|+++|+|+++|+||||.|+.+.. ...+++++++++ +.++++.++.++++++||||||.+++.++.++|++|++
T Consensus 23 ~L~~~~~v~~~d~~g~G~s~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~ 97 (251)
T TIGR03695 23 LLGPHFRCLAIDLPGHGSSQSPDE-----IERYDFEEAAQDILATLLDQLGIEPFFLVGYSMGGRIALYYALQYPERVQG 97 (251)
T ss_pred HhcccCeEEEEcCCCCCCCCCCCc-----cChhhHHHHHHHHHHHHHHHcCCCeEEEEEeccHHHHHHHHHHhCchheee
Confidence 466789999999999999987542 246789999999 88888899889999999999999999999999999999
Q ss_pred eeEeccch
Q 028885 81 MILLNISL 88 (202)
Q Consensus 81 lvli~~~~ 88 (202)
+|++++..
T Consensus 98 lil~~~~~ 105 (251)
T TIGR03695 98 LILESGSP 105 (251)
T ss_pred eEEecCCC
Confidence 99999864
No 29
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.86 E-value=1.2e-21 Score=145.15 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=69.0
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC------CceEEEecChhhHHHHHHHHhCcccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK------DQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~------~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
.+|+|+++|+||||.|+... ....+.+.+++|+.++++.++. .+++|+||||||.+++.++.++|++|
T Consensus 86 ~Gy~V~~~D~rGhG~S~~~~------~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v 159 (330)
T PLN02298 86 MGFACFALDLEGHGRSEGLR------AYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGF 159 (330)
T ss_pred CCCEEEEecCCCCCCCCCcc------ccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccc
Confidence 57999999999999997543 2346889999999999998853 37999999999999999999999999
Q ss_pred cceeEeccchh
Q 028885 79 RGMILLNISLR 89 (202)
Q Consensus 79 ~~lvli~~~~~ 89 (202)
+++|+++|...
T Consensus 160 ~~lvl~~~~~~ 170 (330)
T PLN02298 160 DGAVLVAPMCK 170 (330)
T ss_pred eeEEEeccccc
Confidence 99999998643
No 30
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.86 E-value=7.2e-22 Score=144.48 Aligned_cols=83 Identities=34% Similarity=0.566 Sum_probs=71.5
Q ss_pred CCcCCc--ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccc
Q 028885 1 MVLAKS--HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 1 ~~L~~~--~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
+.|++. ++|+++|++|||.++..+. ...|+..++++.+..++.+.+.++++++|||+||.+|+.+|+.+|+.|
T Consensus 79 ~~L~~~~~~~v~aiDl~G~g~~s~~~~-----~~~y~~~~~v~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~V 153 (326)
T KOG1454|consen 79 PLLSKAKGLRVLAIDLPGHGYSSPLPR-----GPLYTLRELVELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETV 153 (326)
T ss_pred cccccccceEEEEEecCCCCcCCCCCC-----CCceehhHHHHHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCcccc
Confidence 356666 9999999999995554333 356999999999999999999999999999999999999999999999
Q ss_pred ccee---Eeccch
Q 028885 79 RGMI---LLNISL 88 (202)
Q Consensus 79 ~~lv---li~~~~ 88 (202)
+++| ++++..
T Consensus 154 ~~lv~~~~~~~~~ 166 (326)
T KOG1454|consen 154 DSLVLLDLLGPPV 166 (326)
T ss_pred cceeeeccccccc
Confidence 9999 555543
No 31
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.86 E-value=5.5e-22 Score=139.45 Aligned_cols=75 Identities=28% Similarity=0.494 Sum_probs=70.6
Q ss_pred ceEEEeccCCCCCCCC---CCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 7 HRVYSIDLIGYGYSDK---PNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
|+|+++|+||+|.|+. .. ...++.+++++++..++++++.++++++||||||++++.+|+++|++|+++|+
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPD------FPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSG------SCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCCccCC------cccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 7899999999999995 33 47899999999999999999999999999999999999999999999999999
Q ss_pred eccc
Q 028885 84 LNIS 87 (202)
Q Consensus 84 i~~~ 87 (202)
+++.
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9995
No 32
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.86 E-value=1.5e-20 Score=142.09 Aligned_cols=86 Identities=24% Similarity=0.310 Sum_probs=68.5
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|+++|+|+++|+||||.|+.+... .. ......+.+++++.++++.++.++++++||||||.+++.+|.++|++|+++
T Consensus 127 ~L~~~~~vi~~D~rG~G~S~~~~~~-~~-~~~~~~~~~~~~i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~l 204 (402)
T PLN02894 127 ALASRFRVIAIDQLGWGGSSRPDFT-CK-STEETEAWFIDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHL 204 (402)
T ss_pred HHHhCCEEEEECCCCCCCCCCCCcc-cc-cHHHHHHHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCchhhcEE
Confidence 3667899999999999999875410 00 001112346778888888899999999999999999999999999999999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|+++|...
T Consensus 205 vl~~p~~~ 212 (402)
T PLN02894 205 ILVGPAGF 212 (402)
T ss_pred EEECCccc
Confidence 99998754
No 33
>PHA02857 monoglyceride lipase; Provisional
Probab=99.86 E-value=9.5e-21 Score=137.02 Aligned_cols=79 Identities=22% Similarity=0.326 Sum_probs=64.8
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh----cCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
.+|+|+++|+||||.|+... ....++..+++|+.+.++.+ ..++++++||||||.+++.+|.++|++|++
T Consensus 51 ~g~~via~D~~G~G~S~~~~------~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~ 124 (276)
T PHA02857 51 LGILVFSHDHIGHGRSNGEK------MMIDDFGVYVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTA 124 (276)
T ss_pred CCCEEEEccCCCCCCCCCcc------CCcCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccce
Confidence 47999999999999997533 12346677777777777654 346899999999999999999999999999
Q ss_pred eeEeccchh
Q 028885 81 MILLNISLR 89 (202)
Q Consensus 81 lvli~~~~~ 89 (202)
+|+++|...
T Consensus 125 lil~~p~~~ 133 (276)
T PHA02857 125 MILMSPLVN 133 (276)
T ss_pred EEEeccccc
Confidence 999998643
No 34
>PRK10749 lysophospholipase L2; Provisional
Probab=99.86 E-value=1.6e-21 Score=144.22 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=71.0
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh----cCCceEEEecChhhHHHHHHHHhCccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
+.+|+|+++|+||||.|+.+..... .....+++++++|+.++++++ +..+++++||||||.+++.++.++|++|+
T Consensus 79 ~~g~~v~~~D~~G~G~S~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~ 157 (330)
T PRK10749 79 HLGYDVLIIDHRGQGRSGRLLDDPH-RGHVERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFD 157 (330)
T ss_pred HCCCeEEEEcCCCCCCCCCCCCCCC-cCccccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcc
Confidence 5789999999999999986432100 012358999999999999887 56799999999999999999999999999
Q ss_pred ceeEeccchh
Q 028885 80 GMILLNISLR 89 (202)
Q Consensus 80 ~lvli~~~~~ 89 (202)
++|+++|...
T Consensus 158 ~lvl~~p~~~ 167 (330)
T PRK10749 158 AIALCAPMFG 167 (330)
T ss_pred eEEEECchhc
Confidence 9999998643
No 35
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.86 E-value=2.5e-20 Score=140.14 Aligned_cols=87 Identities=21% Similarity=0.265 Sum_probs=70.7
Q ss_pred cCCcceEEEeccCCC-CCCCCCCCCCC---C----CCCCCCHHHHHHHHHHHHHHhcCCc-eEEEecChhhHHHHHHHHh
Q 028885 3 LAKSHRVYSIDLIGY-GYSDKPNPRDF---F----DKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 3 L~~~~~v~~~D~~G~-G~S~~~~~~~~---~----~~~~~~~~~~~~~l~~~~~~l~~~~-~~lvG~S~Gg~~a~~~a~~ 73 (202)
++++|+|+++|++|+ |.|+.+..... . ....++++++++++.+++++++.++ ++++||||||++++.+|.+
T Consensus 88 ~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~ 167 (379)
T PRK00175 88 DTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAID 167 (379)
T ss_pred CccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHh
Confidence 377899999999994 55544321000 0 0126899999999999999999999 5999999999999999999
Q ss_pred CcccccceeEeccchh
Q 028885 74 EPEICRGMILLNISLR 89 (202)
Q Consensus 74 ~p~~v~~lvli~~~~~ 89 (202)
+|++|+++|++++...
T Consensus 168 ~p~~v~~lvl~~~~~~ 183 (379)
T PRK00175 168 YPDRVRSALVIASSAR 183 (379)
T ss_pred ChHhhhEEEEECCCcc
Confidence 9999999999998643
No 36
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.85 E-value=4.2e-20 Score=138.95 Aligned_cols=80 Identities=25% Similarity=0.331 Sum_probs=72.3
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.|.++|+|+++|+||||.|.... ...+++++++++.+++++++.++++++||||||.+++.+|..+|++++++
T Consensus 153 ~l~~~~~v~~~d~~g~G~s~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~l 225 (371)
T PRK14875 153 ALAAGRPVIALDLPGHGASSKAV-------GAGSLDELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRVASL 225 (371)
T ss_pred HHhcCCEEEEEcCCCCCCCCCCC-------CCCCHHHHHHHHHHHHHhcCCccEEEEeechHHHHHHHHHHhCchheeEE
Confidence 36677999999999999997544 35789999999999999999899999999999999999999999999999
Q ss_pred eEeccch
Q 028885 82 ILLNISL 88 (202)
Q Consensus 82 vli~~~~ 88 (202)
|++++..
T Consensus 226 v~~~~~~ 232 (371)
T PRK14875 226 TLIAPAG 232 (371)
T ss_pred EEECcCC
Confidence 9998863
No 37
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.85 E-value=9.5e-20 Score=131.97 Aligned_cols=79 Identities=22% Similarity=0.447 Sum_probs=70.9
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEec
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 85 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~ 85 (202)
+|+|+++|+||||.|+.+... ...++.+.+++++.+++++++.++++++||||||.+++.++.++|++|+++|+++
T Consensus 53 g~~vi~~d~~G~G~s~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~ 128 (288)
T TIGR01250 53 GREVIMYDQLGCGYSDQPDDS----DELWTIDYFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISS 128 (288)
T ss_pred CCEEEEEcCCCCCCCCCCCcc----cccccHHHHHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccceeeEec
Confidence 799999999999999876421 1148999999999999999999999999999999999999999999999999998
Q ss_pred cch
Q 028885 86 ISL 88 (202)
Q Consensus 86 ~~~ 88 (202)
+..
T Consensus 129 ~~~ 131 (288)
T TIGR01250 129 MLD 131 (288)
T ss_pred ccc
Confidence 864
No 38
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.84 E-value=8.5e-21 Score=132.70 Aligned_cols=172 Identities=21% Similarity=0.246 Sum_probs=108.5
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc------CCceEEEecChhhHHHHHHHHhCccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQAAVMEPEI 77 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~------~~~~~lvG~S~Gg~~a~~~a~~~p~~ 77 (202)
..+|.|+++|++|||.|+... ..-.+++..++|+.++.+... ..+.+++||||||.|++.++.++|+.
T Consensus 80 ~~g~~v~a~D~~GhG~SdGl~------~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~ 153 (313)
T KOG1455|consen 80 KSGFAVYAIDYEGHGRSDGLH------AYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNF 153 (313)
T ss_pred hCCCeEEEeeccCCCcCCCCc------ccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcc
Confidence 457999999999999999877 367799999999999988643 34899999999999999999999999
Q ss_pred ccceeEeccchhhhhccCCCCCCChhhHHHHHHHhchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcHHHHHHHh-ccc
Q 028885 78 CRGMILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKIL-QPG 156 (202)
Q Consensus 78 v~~lvli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 156 (202)
.+|+|+++|.+.........+........+..++... +....... ......+++...... .+.
T Consensus 154 w~G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~liP~w-------k~vp~~d~---------~~~~~kdp~~r~~~~~npl 217 (313)
T KOG1455|consen 154 WDGAILVAPMCKISEDTKPHPPVISILTLLSKLIPTW-------KIVPTKDI---------IDVAFKDPEKRKILRSDPL 217 (313)
T ss_pred cccceeeecccccCCccCCCcHHHHHHHHHHHhCCce-------eecCCccc---------cccccCCHHHHHHhhcCCc
Confidence 9999999998765433222222222222222221110 00000000 001111333333222 222
Q ss_pred C--CCCHHHHHHHHHhhcCCCCccccCCCCCcceEEeecCCCCCCC
Q 028885 157 L--ETGAADVFLEFICYSGGPLPEELLPQVKVSFFKLDQIHNMPIS 200 (202)
Q Consensus 157 ~--~~~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~p~~ 200 (202)
. .....+...++++... +....++++++|.+++||++| -|.
T Consensus 218 ~y~g~pRl~T~~ElLr~~~--~le~~l~~vtvPflilHG~dD-~VT 260 (313)
T KOG1455|consen 218 CYTGKPRLKTAYELLRVTA--DLEKNLNEVTVPFLILHGTDD-KVT 260 (313)
T ss_pred eecCCccHHHHHHHHHHHH--HHHHhcccccccEEEEecCCC-ccc
Confidence 1 1223444445543332 245678999999999999999 554
No 39
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.84 E-value=3.3e-20 Score=136.04 Aligned_cols=81 Identities=20% Similarity=0.199 Sum_probs=71.9
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
..+|+|+++|+||||.|+.+.. ...++.+++++++..++++++.++++++||||||.+++.++.++|++|+++|+
T Consensus 51 ~~~~~vi~~D~~G~G~S~~~~~-----~~~~~~~~~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl 125 (306)
T TIGR01249 51 PETYRIVLFDQRGCGKSTPHAC-----LEENTTWDLVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVL 125 (306)
T ss_pred ccCCEEEEECCCCCCCCCCCCC-----cccCCHHHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhhee
Confidence 3579999999999999986542 13568899999999999999999999999999999999999999999999999
Q ss_pred eccchh
Q 028885 84 LNISLR 89 (202)
Q Consensus 84 i~~~~~ 89 (202)
+++...
T Consensus 126 ~~~~~~ 131 (306)
T TIGR01249 126 RGIFLL 131 (306)
T ss_pred eccccC
Confidence 998643
No 40
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.82 E-value=5.3e-19 Score=152.05 Aligned_cols=86 Identities=23% Similarity=0.286 Sum_probs=73.2
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPR-DFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
.|+++|+|+++|+||||.|+..... .......++++.+++++.+++++++.++++|+||||||.+++.++.+||++|++
T Consensus 1393 ~L~~~~rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~ 1472 (1655)
T PLN02980 1393 AISGSARCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEG 1472 (1655)
T ss_pred HHhCCCEEEEEcCCCCCCCCCccccccccccccCCHHHHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCE
Confidence 4677899999999999999764310 000023578999999999999999999999999999999999999999999999
Q ss_pred eeEeccc
Q 028885 81 MILLNIS 87 (202)
Q Consensus 81 lvli~~~ 87 (202)
+|++++.
T Consensus 1473 lVlis~~ 1479 (1655)
T PLN02980 1473 AVIISGS 1479 (1655)
T ss_pred EEEECCC
Confidence 9999875
No 41
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.81 E-value=1.5e-18 Score=130.03 Aligned_cols=85 Identities=20% Similarity=0.240 Sum_probs=70.2
Q ss_pred CcceEEEeccCCCCCCCCC-------C---C---CCC-CCCCCCCHHHHHHHHHHHHHHhcCCceE-EEecChhhHHHHH
Q 028885 5 KSHRVYSIDLIGYGYSDKP-------N---P---RDF-FDKPFYTFETWASQLNDFCKDVVKDQAF-FICNSIGGLVGLQ 69 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~-------~---~---~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~-lvG~S~Gg~~a~~ 69 (202)
+.|.||++|..|-|.|..| . + ... .....++++++++++.++++++++++++ +|||||||++++.
T Consensus 98 ~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~ 177 (389)
T PRK06765 98 NKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQE 177 (389)
T ss_pred CceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHH
Confidence 4699999999998864322 1 1 000 0135689999999999999999999987 9999999999999
Q ss_pred HHHhCcccccceeEeccchh
Q 028885 70 AAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 70 ~a~~~p~~v~~lvli~~~~~ 89 (202)
+|.+||++|+++|++++...
T Consensus 178 ~a~~~P~~v~~lv~ia~~~~ 197 (389)
T PRK06765 178 WAVHYPHMVERMIGVIGNPQ 197 (389)
T ss_pred HHHHChHhhheEEEEecCCC
Confidence 99999999999999988643
No 42
>PLN02511 hydrolase
Probab=99.81 E-value=1.7e-19 Score=135.77 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=65.5
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC----CceEEEecChhhHHHHHHHHhCccc-
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK----DQAFFICNSIGGLVGLQAAVMEPEI- 77 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~lvG~S~Gg~~a~~~a~~~p~~- 77 (202)
++++|+|+++|+||||.|....+ .+....+.+|+.+++++++. .+++++||||||.+++.++.++|++
T Consensus 126 ~~~g~~vv~~d~rG~G~s~~~~~-------~~~~~~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~~ 198 (388)
T PLN02511 126 RSKGWRVVVFNSRGCADSPVTTP-------QFYSASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENC 198 (388)
T ss_pred HHCCCEEEEEecCCCCCCCCCCc-------CEEcCCchHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCCC
Confidence 46789999999999999976542 22235677888888888765 5899999999999999999999987
Q ss_pred -ccceeEeccch
Q 028885 78 -CRGMILLNISL 88 (202)
Q Consensus 78 -v~~lvli~~~~ 88 (202)
|+++|+++++.
T Consensus 199 ~v~~~v~is~p~ 210 (388)
T PLN02511 199 PLSGAVSLCNPF 210 (388)
T ss_pred CceEEEEECCCc
Confidence 89999887754
No 43
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.79 E-value=1.5e-18 Score=130.46 Aligned_cols=78 Identities=27% Similarity=0.364 Sum_probs=65.2
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC----CceEEEecChhhHHHHHHHHhCcc---
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK----DQAFFICNSIGGLVGLQAAVMEPE--- 76 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~lvG~S~Gg~~a~~~a~~~p~--- 76 (202)
..+|+|+++|+||||.|+... ....+.+.+++|+.++++.+.. .+++++||||||.+++.++ .+|+
T Consensus 161 ~~Gy~V~~~D~rGhG~S~~~~------~~~~~~~~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a-~~p~~~~ 233 (395)
T PLN02652 161 SCGFGVYAMDWIGHGGSDGLH------GYVPSLDYVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA-SYPSIED 233 (395)
T ss_pred HCCCEEEEeCCCCCCCCCCCC------CCCcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH-hccCccc
Confidence 358999999999999998754 2346888999999999998763 3799999999999999776 4664
Q ss_pred cccceeEeccch
Q 028885 77 ICRGMILLNISL 88 (202)
Q Consensus 77 ~v~~lvli~~~~ 88 (202)
+|+++|+.+|..
T Consensus 234 ~v~glVL~sP~l 245 (395)
T PLN02652 234 KLEGIVLTSPAL 245 (395)
T ss_pred ccceEEEECccc
Confidence 899999998864
No 44
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.79 E-value=4.5e-18 Score=122.65 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=69.5
Q ss_pred cC-CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-CCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 3 LA-KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 3 L~-~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
|. .+|+|+++|+||||.|.... ...++++++++++.++++++. .++++||||||||.++..++.++|++|++
T Consensus 41 L~~~g~~vi~~dl~g~G~s~~~~------~~~~~~~~~~~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~ 114 (273)
T PLN02211 41 MENSGYKVTCIDLKSAGIDQSDA------DSVTTFDEYNKPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPKKICL 114 (273)
T ss_pred HHhCCCEEEEecccCCCCCCCCc------ccCCCHHHHHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhChhheeE
Confidence 44 57999999999999885433 134799999999999999985 58999999999999999999999999999
Q ss_pred eeEeccc
Q 028885 81 MILLNIS 87 (202)
Q Consensus 81 lvli~~~ 87 (202)
+|++++.
T Consensus 115 lv~~~~~ 121 (273)
T PLN02211 115 AVYVAAT 121 (273)
T ss_pred EEEeccc
Confidence 9999875
No 45
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.78 E-value=1e-18 Score=115.28 Aligned_cols=155 Identities=19% Similarity=0.244 Sum_probs=98.8
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHH---HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWA---SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
++|+++|.||+|.|.+|.. ....+.+. ++..++++.|+.+++.++|+|=||..++..|+++++.|.++|+
T Consensus 72 ~TivawDPpGYG~SrPP~R-------kf~~~ff~~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rmii 144 (277)
T KOG2984|consen 72 VTIVAWDPPGYGTSRPPER-------KFEVQFFMKDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRMII 144 (277)
T ss_pred eEEEEECCCCCCCCCCCcc-------cchHHHHHHhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhhee
Confidence 8999999999999988773 34444444 4556778899999999999999999999999999999999999
Q ss_pred eccchhhhhccCCCCCCChhhHHHHHHHhchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcHHHHHHHhcccCCCCHHH
Q 028885 84 LNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLETGAAD 163 (202)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (202)
++.....-. ........++..-. |. ...++-+...+ ..|..++... .+.+
T Consensus 145 wga~ayvn~------~~~ma~kgiRdv~k------Ws-------~r~R~P~e~~Y------g~e~f~~~wa-----~wvD 194 (277)
T KOG2984|consen 145 WGAAAYVNH------LGAMAFKGIRDVNK------WS-------ARGRQPYEDHY------GPETFRTQWA-----AWVD 194 (277)
T ss_pred ecccceecc------hhHHHHhchHHHhh------hh-------hhhcchHHHhc------CHHHHHHHHH-----HHHH
Confidence 998743211 01111111111110 00 11111111111 1222222222 1233
Q ss_pred HHHHHHhhcCCCCccccCCCCCcceEEeecCCCCCC
Q 028885 164 VFLEFICYSGGPLPEELLPQVKVSFFKLDQIHNMPI 199 (202)
Q Consensus 164 ~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~p~ 199 (202)
...++....+....+-.+++|+||+||++|+.| |.
T Consensus 195 ~v~qf~~~~dG~fCr~~lp~vkcPtli~hG~kD-p~ 229 (277)
T KOG2984|consen 195 VVDQFHSFCDGRFCRLVLPQVKCPTLIMHGGKD-PF 229 (277)
T ss_pred HHHHHhhcCCCchHhhhcccccCCeeEeeCCcC-CC
Confidence 444444444445557789999999999999999 54
No 46
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.77 E-value=6.2e-17 Score=112.69 Aligned_cols=178 Identities=17% Similarity=0.201 Sum_probs=114.7
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccccccee
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lv 82 (202)
+.+++.|+.+|.|||-.-...-+.++ ...|.+++++++..++++++.+.++-+|...|+.|..++|..||++|.+||
T Consensus 75 i~~~fcv~HV~~PGqe~gAp~~p~~y---~yPsmd~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLv 151 (326)
T KOG2931|consen 75 ILEHFCVYHVDAPGQEDGAPSFPEGY---PYPSMDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPERVLGLV 151 (326)
T ss_pred HHhheEEEecCCCccccCCccCCCCC---CCCCHHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhheeEEE
Confidence 44679999999999955544443322 467999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhhccCCCCCCChhhHHHHHHHhchhHHHHHHHHhcChHHHHHHHHHhcCCC-CCCcHHHHHHHhcccCCC-C
Q 028885 83 LLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDT-SQVTEELVEKILQPGLET-G 160 (202)
Q Consensus 83 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~ 160 (202)
||++.+....+ ..+....+... .++............+...++.. .....++.+++.+...+. +
T Consensus 152 LIn~~~~a~gw----------iew~~~K~~s~----~l~~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~~N 217 (326)
T KOG2931|consen 152 LINCDPCAKGW----------IEWAYNKVSSN----LLYYYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGERLN 217 (326)
T ss_pred EEecCCCCchH----------HHHHHHHHHHH----HHHhhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhcCC
Confidence 99998665422 12222221111 11111112222333344444433 223566777776655432 2
Q ss_pred --HHHHHHHHHhhcCCCCccccCC----CCCcceEEeecCCCCCCC
Q 028885 161 --AADVFLEFICYSGGPLPEELLP----QVKVSFFKLDQIHNMPIS 200 (202)
Q Consensus 161 --~~~~~~~~~~~~~~~~~~~~l~----~i~~Pvl~i~G~~D~p~~ 200 (202)
....++.. +....++..... +++||||++.|+.. |..
T Consensus 218 ~~Nl~~fl~a--yn~R~DL~~~r~~~~~tlkc~vllvvGd~S-p~~ 260 (326)
T KOG2931|consen 218 PKNLALFLNA--YNGRRDLSIERPKLGTTLKCPVLLVVGDNS-PHV 260 (326)
T ss_pred hhHHHHHHHH--hcCCCCccccCCCcCccccccEEEEecCCC-chh
Confidence 23333333 333333333222 56799999999998 654
No 47
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.76 E-value=1.4e-17 Score=117.06 Aligned_cols=178 Identities=17% Similarity=0.198 Sum_probs=98.8
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccccccee
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lv 82 (202)
+.+++.++.+|.|||..-....+..+ ...|.+++++++..++++++++.++-+|...|+.|..++|..||++|.|+|
T Consensus 52 i~~~f~i~Hi~aPGqe~ga~~~p~~y---~yPsmd~LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLi 128 (283)
T PF03096_consen 52 ILQNFCIYHIDAPGQEEGAATLPEGY---QYPSMDQLAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPERVLGLI 128 (283)
T ss_dssp HHTTSEEEEEE-TTTSTT-----TT--------HHHHHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGGEEEEE
T ss_pred HhhceEEEEEeCCCCCCCcccccccc---cccCHHHHHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCccceeEEE
Confidence 56789999999999976655544322 467999999999999999999999999999999999999999999999999
Q ss_pred EeccchhhhhccCCCCCCChhhHHHHHHHhchhHHHHHHHHhcChHHHHHH-HHHhcCCCC-CCcHHHHHHHhcccCC-C
Q 028885 83 LLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNI-LCQCYNDTS-QVTEELVEKILQPGLE-T 159 (202)
Q Consensus 83 li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~-~ 159 (202)
|+++.+....+ ...+...+.. ..+. .......+.+. +...++... ....++.+.+.....+ .
T Consensus 129 Lvn~~~~~~gw----------~Ew~~~K~~~----~~L~-~~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~~~ 193 (283)
T PF03096_consen 129 LVNPTCTAAGW----------MEWFYQKLSS----WLLY-SYGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDERI 193 (283)
T ss_dssp EES---S---H----------HHHHHHHHH------------CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-T
T ss_pred EEecCCCCccH----------HHHHHHHHhc----cccc-ccccccchHHhhhhcccccccccccHHHHHHHHHHHhcCC
Confidence 99998665422 2222222211 0011 11111222222 222232221 1244566666655543 3
Q ss_pred CHHHHHHHHHhhcCCCCccccCCCCCcceEEeecCCCCCC
Q 028885 160 GAADVFLEFICYSGGPLPEELLPQVKVSFFKLDQIHNMPI 199 (202)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~p~ 199 (202)
+......-+..+....+....++...||+|+|.|+.. |.
T Consensus 194 Np~Nl~~f~~sy~~R~DL~~~~~~~~c~vLlvvG~~S-p~ 232 (283)
T PF03096_consen 194 NPKNLALFLNSYNSRTDLSIERPSLGCPVLLVVGDNS-PH 232 (283)
T ss_dssp THHHHHHHHHHHHT-----SECTTCCS-EEEEEETTS-TT
T ss_pred CHHHHHHHHHHHhccccchhhcCCCCCCeEEEEecCC-cc
Confidence 3333333333445555666777888999999999998 64
No 48
>PRK05855 short chain dehydrogenase; Validated
Probab=99.75 E-value=1.1e-17 Score=132.85 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=65.9
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCc-eEEEecChhhHHHHHHHHh--Ccccc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQAAVM--EPEIC 78 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~lvG~S~Gg~~a~~~a~~--~p~~v 78 (202)
.|+++|+|+++|+||||.|+.+.. ...++.+++++|+.+++++++..+ ++|+||||||.+++.++.+ .++++
T Consensus 47 ~L~~~~~Vi~~D~~G~G~S~~~~~-----~~~~~~~~~a~dl~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~~~~~~~v 121 (582)
T PRK05855 47 LLADRFRVVAYDVRGAGRSSAPKR-----TAAYTLARLADDFAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTRPRAAGRI 121 (582)
T ss_pred HhhcceEEEEecCCCCCCCCCCCc-----ccccCHHHHHHHHHHHHHHhCCCCcEEEEecChHHHHHHHHHhCccchhhh
Confidence 577889999999999999987553 246899999999999999998765 9999999999999988876 34556
Q ss_pred cceeEecc
Q 028885 79 RGMILLNI 86 (202)
Q Consensus 79 ~~lvli~~ 86 (202)
..++.+++
T Consensus 122 ~~~~~~~~ 129 (582)
T PRK05855 122 ASFTSVSG 129 (582)
T ss_pred hhheeccC
Confidence 66655554
No 49
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.74 E-value=2.4e-16 Score=121.54 Aligned_cols=83 Identities=14% Similarity=0.056 Sum_probs=67.3
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHH----HHHHhC-cccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGL----QAAVME-PEIC 78 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~----~~a~~~-p~~v 78 (202)
+.+|+|+++|++|+|.|..... ...|..+.+.+.+..+++.++.++++++||||||.++. .+++.+ |++|
T Consensus 218 ~qGf~V~~iDwrgpg~s~~~~~-----~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv 292 (532)
T TIGR01838 218 EQGHTVFVISWRNPDASQADKT-----FDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRI 292 (532)
T ss_pred HCCcEEEEEECCCCCcccccCC-----hhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCcc
Confidence 4689999999999998865432 24567777888888888888999999999999999852 356665 8899
Q ss_pred cceeEeccchhhh
Q 028885 79 RGMILLNISLRML 91 (202)
Q Consensus 79 ~~lvli~~~~~~~ 91 (202)
+++|++++.....
T Consensus 293 ~slvll~t~~Df~ 305 (532)
T TIGR01838 293 KSATFFTTLLDFS 305 (532)
T ss_pred ceEEEEecCcCCC
Confidence 9999999986643
No 50
>PRK10985 putative hydrolase; Provisional
Probab=99.73 E-value=1.1e-16 Score=118.28 Aligned_cols=83 Identities=11% Similarity=-0.025 Sum_probs=58.8
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccc--ccce
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI--CRGM 81 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~--v~~l 81 (202)
..+|+|+++|+||||.+.......+ .....++....+..+.++++..+++++||||||.+++.++.++++. ++++
T Consensus 85 ~~G~~v~~~d~rG~g~~~~~~~~~~---~~~~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~ 161 (324)
T PRK10985 85 KRGWLGVVMHFRGCSGEPNRLHRIY---HSGETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAA 161 (324)
T ss_pred HCCCEEEEEeCCCCCCCccCCcceE---CCCchHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCCCCccEE
Confidence 4689999999999998754322110 1112344444444444456677899999999999999988887654 8999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|+++++..
T Consensus 162 v~i~~p~~ 169 (324)
T PRK10985 162 VIVSAPLM 169 (324)
T ss_pred EEEcCCCC
Confidence 99998754
No 51
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.73 E-value=2.6e-16 Score=119.34 Aligned_cols=78 Identities=15% Similarity=0.145 Sum_probs=61.8
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---cCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
+.||+|+++|+||||.|.... ...........+.+++... +.+++.++||||||.+++++|..+|++|++
T Consensus 220 ~~Gy~vl~~D~pG~G~s~~~~-------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a 292 (414)
T PRK05077 220 PRGIAMLTIDMPSVGFSSKWK-------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKA 292 (414)
T ss_pred hCCCEEEEECCCCCCCCCCCC-------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceE
Confidence 457999999999999996532 1123444455666666554 457899999999999999999999999999
Q ss_pred eeEeccch
Q 028885 81 MILLNISL 88 (202)
Q Consensus 81 lvli~~~~ 88 (202)
+|++++..
T Consensus 293 ~V~~~~~~ 300 (414)
T PRK05077 293 VACLGPVV 300 (414)
T ss_pred EEEECCcc
Confidence 99999874
No 52
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.72 E-value=4.5e-17 Score=120.48 Aligned_cols=83 Identities=20% Similarity=0.280 Sum_probs=65.8
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc------------------------CCceEEEe
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV------------------------KDQAFFIC 59 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~------------------------~~~~~lvG 59 (202)
..+|+|+++|+||||.|+...... ....+++++++|+.++++.+. ..|++++|
T Consensus 72 ~~G~~V~~~D~rGHG~S~~~~~~~---g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~G 148 (332)
T TIGR01607 72 KNGYSVYGLDLQGHGESDGLQNLR---GHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIG 148 (332)
T ss_pred HCCCcEEEecccccCCCccccccc---cchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEee
Confidence 468999999999999998653210 122488999999999998652 34799999
Q ss_pred cChhhHHHHHHHHhCcc--------cccceeEeccchh
Q 028885 60 NSIGGLVGLQAAVMEPE--------ICRGMILLNISLR 89 (202)
Q Consensus 60 ~S~Gg~~a~~~a~~~p~--------~v~~lvli~~~~~ 89 (202)
|||||.+++.++..+++ .++++|+++|...
T Consensus 149 hSmGg~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~ 186 (332)
T TIGR01607 149 LSMGGNIALRLLELLGKSNENNDKLNIKGCISLSGMIS 186 (332)
T ss_pred ccCccHHHHHHHHHhccccccccccccceEEEeccceE
Confidence 99999999999987653 5999999998753
No 53
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.72 E-value=1.3e-16 Score=119.02 Aligned_cols=77 Identities=18% Similarity=0.344 Sum_probs=62.4
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHH-H----HHHHHHhcCCceEEEecChhhHHHHHHHHhCcccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQ-L----NDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~-l----~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
..+|+|+++|++|+|.|+. ..++++++.+ + ..+++..+.++++++||||||++++.+++.+|++|
T Consensus 92 ~~G~~V~~~D~~g~g~s~~----------~~~~~d~~~~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~v 161 (350)
T TIGR01836 92 ERGQDVYLIDWGYPDRADR----------YLTLDDYINGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKI 161 (350)
T ss_pred HCCCeEEEEeCCCCCHHHh----------cCCHHHHHHHHHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchhe
Confidence 4579999999999998753 2456666533 3 44555567789999999999999999999999999
Q ss_pred cceeEeccchhh
Q 028885 79 RGMILLNISLRM 90 (202)
Q Consensus 79 ~~lvli~~~~~~ 90 (202)
+++|+++++...
T Consensus 162 ~~lv~~~~p~~~ 173 (350)
T TIGR01836 162 KNLVTMVTPVDF 173 (350)
T ss_pred eeEEEecccccc
Confidence 999999998654
No 54
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.72 E-value=7.8e-17 Score=107.96 Aligned_cols=151 Identities=15% Similarity=0.199 Sum_probs=99.3
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc---CCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.+|+|++|.+||||...... -..+.++|.+++.+..++|. .+.+.++|.||||.+++.+|..+| ++++
T Consensus 41 ~GyTv~aP~ypGHG~~~e~f-------l~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p--~K~i 111 (243)
T COG1647 41 NGYTVYAPRYPGHGTLPEDF-------LKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP--PKKI 111 (243)
T ss_pred CCceEecCCCCCCCCCHHHH-------hcCCHHHHHHHHHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhCC--ccce
Confidence 57999999999999886433 35799999999988877764 678999999999999999999999 9999
Q ss_pred eEeccchhhhhccCCCCCCChhhHHHHHHHhchhHHHHHHHHhcChHHHHHHHHHhcCCCCCCcHHHHHHHhcccCC--C
Q 028885 82 ILLNISLRMLHIKKQPWYGRPLIRSFQNLLRNTAAGKLFYKMVATSESVRNILCQCYNDTSQVTEELVEKILQPGLE--T 159 (202)
Q Consensus 82 vli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (202)
|.+|++..... | ...+..++. ++ ++ ...-...+.+..+..+..... .
T Consensus 112 v~m~a~~~~k~-----~-----~~iie~~l~------y~--------------~~-~kk~e~k~~e~~~~e~~~~~~~~~ 160 (243)
T COG1647 112 VPMCAPVNVKS-----W-----RIIIEGLLE------YF--------------RN-AKKYEGKDQEQIDKEMKSYKDTPM 160 (243)
T ss_pred eeecCCccccc-----c-----hhhhHHHHH------HH--------------HH-hhhccCCCHHHHHHHHHHhhcchH
Confidence 99999754321 1 111111111 00 00 001112344444444443332 2
Q ss_pred CHHHHHHHHHhhcCCCCccccCCCCCcceEEeecCCCCCCC
Q 028885 160 GAADVFLEFICYSGGPLPEELLPQVKVSFFKLDQIHNMPIS 200 (202)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~l~~i~~Pvl~i~G~~D~p~~ 200 (202)
.....+..++... ...+..|..|++++.|.+|.++.
T Consensus 161 ~~~~~~~~~i~~~-----~~~~~~I~~pt~vvq~~~D~mv~ 196 (243)
T COG1647 161 TTTAQLKKLIKDA-----RRSLDKIYSPTLVVQGRQDEMVP 196 (243)
T ss_pred HHHHHHHHHHHHH-----HhhhhhcccchhheecccCCCCC
Confidence 3333444444322 34578899999999999995543
No 55
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.70 E-value=4.6e-16 Score=112.31 Aligned_cols=74 Identities=19% Similarity=0.124 Sum_probs=61.6
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-----cCCceEEEecChhhHHHHHHHHhCccccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
.+|+|+++|+||||.|.... .+.+.+.+|+.++++.+ +.++++++||||||.+++.++.. +++|+
T Consensus 56 ~G~~v~~~Dl~G~G~S~~~~---------~~~~~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~ 125 (274)
T TIGR03100 56 AGFPVLRFDYRGMGDSEGEN---------LGFEGIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DLRVA 125 (274)
T ss_pred CCCEEEEeCCCCCCCCCCCC---------CCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CCCcc
Confidence 57999999999999987432 46677888888888776 45679999999999999999865 46899
Q ss_pred ceeEeccch
Q 028885 80 GMILLNISL 88 (202)
Q Consensus 80 ~lvli~~~~ 88 (202)
++|+++|..
T Consensus 126 ~lil~~p~~ 134 (274)
T TIGR03100 126 GLVLLNPWV 134 (274)
T ss_pred EEEEECCcc
Confidence 999999863
No 56
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.69 E-value=1.5e-16 Score=113.25 Aligned_cols=78 Identities=19% Similarity=0.257 Sum_probs=66.3
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH---HHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFC---KDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.+|+|+++|+||||.|+... ...+++.+++|+.+++ ++.+.++++++||||||.+++.++.++|++++++
T Consensus 55 ~Gy~Vl~~Dl~G~G~S~g~~-------~~~~~~~~~~Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~l 127 (266)
T TIGR03101 55 GGFGVLQIDLYGCGDSAGDF-------AAARWDVWKEDVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLAAKCNRL 127 (266)
T ss_pred CCCEEEEECCCCCCCCCCcc-------ccCCHHHHHHHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCccccceE
Confidence 57999999999999997654 2357788888877754 4446679999999999999999999999999999
Q ss_pred eEeccchh
Q 028885 82 ILLNISLR 89 (202)
Q Consensus 82 vli~~~~~ 89 (202)
|+++|...
T Consensus 128 VL~~P~~~ 135 (266)
T TIGR03101 128 VLWQPVVS 135 (266)
T ss_pred EEeccccc
Confidence 99999744
No 57
>PRK13604 luxD acyl transferase; Provisional
Probab=99.60 E-value=1.1e-14 Score=104.59 Aligned_cols=77 Identities=12% Similarity=-0.007 Sum_probs=57.6
Q ss_pred CCcceEEEeccCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---cCCceEEEecChhhHHHHHHHHhCccccc
Q 028885 4 AKSHRVYSIDLIGY-GYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 4 ~~~~~v~~~D~~G~-G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
..||.|+.+|.||| |.|+..- ...+.....+|+.++++.+ +.+++.|+||||||.+++..|... .++
T Consensus 62 ~~G~~vLrfD~rg~~GeS~G~~-------~~~t~s~g~~Dl~aaid~lk~~~~~~I~LiG~SmGgava~~~A~~~--~v~ 132 (307)
T PRK13604 62 SNGFHVIRYDSLHHVGLSSGTI-------DEFTMSIGKNSLLTVVDWLNTRGINNLGLIAASLSARIAYEVINEI--DLS 132 (307)
T ss_pred HCCCEEEEecCCCCCCCCCCcc-------ccCcccccHHHHHHHHHHHHhcCCCceEEEEECHHHHHHHHHhcCC--CCC
Confidence 46899999999998 9996644 2334444467776665554 456899999999999997777643 399
Q ss_pred ceeEeccchh
Q 028885 80 GMILLNISLR 89 (202)
Q Consensus 80 ~lvli~~~~~ 89 (202)
++|+.+|...
T Consensus 133 ~lI~~sp~~~ 142 (307)
T PRK13604 133 FLITAVGVVN 142 (307)
T ss_pred EEEEcCCccc
Confidence 9999999754
No 58
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.59 E-value=2.9e-14 Score=119.13 Aligned_cols=79 Identities=16% Similarity=0.193 Sum_probs=59.9
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---hcCCceEEEecChhhHHHHHHHHhC-ccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD---VVKDQAFFICNSIGGLVGLQAAVME-PEICR 79 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~~~lvG~S~Gg~~a~~~a~~~-p~~v~ 79 (202)
..+|+|+++|+ |.|+.+.. ....++.+++..+.+.++. +..++++++||||||++++.+++.+ +++|+
T Consensus 97 ~~g~~v~~~d~---G~~~~~~~-----~~~~~l~~~i~~l~~~l~~v~~~~~~~v~lvG~s~GG~~a~~~aa~~~~~~v~ 168 (994)
T PRK07868 97 RAGLDPWVIDF---GSPDKVEG-----GMERNLADHVVALSEAIDTVKDVTGRDVHLVGYSQGGMFCYQAAAYRRSKDIA 168 (994)
T ss_pred HCCCEEEEEcC---CCCChhHc-----CccCCHHHHHHHHHHHHHHHHHhhCCceEEEEEChhHHHHHHHHHhcCCCccc
Confidence 45799999994 66665432 1246777777777666654 3457899999999999999998755 56899
Q ss_pred ceeEeccchhh
Q 028885 80 GMILLNISLRM 90 (202)
Q Consensus 80 ~lvli~~~~~~ 90 (202)
++|+++++...
T Consensus 169 ~lvl~~~~~d~ 179 (994)
T PRK07868 169 SIVTFGSPVDT 179 (994)
T ss_pred eEEEEeccccc
Confidence 99999988543
No 59
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.57 E-value=7e-14 Score=101.14 Aligned_cols=85 Identities=19% Similarity=0.194 Sum_probs=71.4
Q ss_pred CcceEEEeccCCCC-CCCCCCCCCCC------CCCCCCHHHHHHHHHHHHHHhcCCceE-EEecChhhHHHHHHHHhCcc
Q 028885 5 KSHRVYSIDLIGYG-YSDKPNPRDFF------DKPFYTFETWASQLNDFCKDVVKDQAF-FICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 5 ~~~~v~~~D~~G~G-~S~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~l~~~~~~-lvG~S~Gg~~a~~~a~~~p~ 76 (202)
++|.||++|-.|.+ .|+.|...... ....+|+.+++..-..++++||++++. +||-||||+.++.++..|||
T Consensus 91 ~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd 170 (368)
T COG2021 91 ERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPD 170 (368)
T ss_pred cceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChH
Confidence 46999999999997 55554432221 236689999999999999999999977 99999999999999999999
Q ss_pred cccceeEeccchh
Q 028885 77 ICRGMILLNISLR 89 (202)
Q Consensus 77 ~v~~lvli~~~~~ 89 (202)
+|+++|.+++...
T Consensus 171 ~V~~~i~ia~~~r 183 (368)
T COG2021 171 RVRRAIPIATAAR 183 (368)
T ss_pred HHhhhheeccccc
Confidence 9999999998744
No 60
>PLN02872 triacylglycerol lipase
Probab=99.57 E-value=3.4e-13 Score=101.48 Aligned_cols=85 Identities=16% Similarity=0.197 Sum_probs=64.4
Q ss_pred CcceEEEeccCCCCCCCCCCC--CCCCCCCCCCHHHHH-HHHHHHHHHh---cCCceEEEecChhhHHHHHHHHhCcc--
Q 028885 5 KSHRVYSIDLIGYGYSDKPNP--RDFFDKPFYTFETWA-SQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPE-- 76 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~--~~~~~~~~~~~~~~~-~~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~~p~-- 76 (202)
.+|+|+++|+||++.|..-.. ........+++++++ .|+.++++++ ..+++++|||||||.+++.++ .+|+
T Consensus 106 ~GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~ 184 (395)
T PLN02872 106 HGFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVV 184 (395)
T ss_pred CCCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHHH
Confidence 479999999999987643110 000002367899999 7999999986 347999999999999998554 6786
Q ss_pred -cccceeEeccchhh
Q 028885 77 -ICRGMILLNISLRM 90 (202)
Q Consensus 77 -~v~~lvli~~~~~~ 90 (202)
+|+.+++++|....
T Consensus 185 ~~v~~~~~l~P~~~~ 199 (395)
T PLN02872 185 EMVEAAALLCPISYL 199 (395)
T ss_pred HHHHHHHHhcchhhh
Confidence 69999999998654
No 61
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.56 E-value=4.2e-14 Score=100.69 Aligned_cols=74 Identities=28% Similarity=0.463 Sum_probs=65.7
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEecc
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
|+++++|+||||.|. . . .+....+++++..++++++..+++++||||||.+++.++.++|++++++|++++
T Consensus 51 ~~~~~~d~~g~g~s~--~------~-~~~~~~~~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~ 121 (282)
T COG0596 51 YRVIAPDLRGHGRSD--P------A-GYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVLIGP 121 (282)
T ss_pred eEEEEecccCCCCCC--c------c-cccHHHHHHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhcchhhheeeEecC
Confidence 899999999999997 1 1 244455599999999999988999999999999999999999999999999998
Q ss_pred chh
Q 028885 87 SLR 89 (202)
Q Consensus 87 ~~~ 89 (202)
...
T Consensus 122 ~~~ 124 (282)
T COG0596 122 APP 124 (282)
T ss_pred CCC
Confidence 754
No 62
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.55 E-value=1.6e-14 Score=100.17 Aligned_cols=75 Identities=21% Similarity=0.428 Sum_probs=65.1
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc---CCceEEEecChhhHHHHHHHHh--Ccccccc
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVM--EPEICRG 80 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~lvG~S~Gg~~a~~~a~~--~p~~v~~ 80 (202)
..+|+++|+||||+|...+ ..+.+.+.+++|+-++++.+- ..+++||||||||.|+...|.. -|. +.|
T Consensus 102 ~~r~~a~DlRgHGeTk~~~------e~dlS~eT~~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~k~lps-l~G 174 (343)
T KOG2564|consen 102 RCRCLALDLRGHGETKVEN------EDDLSLETMSKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAASKTLPS-LAG 174 (343)
T ss_pred ceeEEEeeccccCccccCC------hhhcCHHHHHHHHHHHHHHHhccCCCceEEEeccccchhhhhhhhhhhchh-hhc
Confidence 4688999999999999887 467999999999999999874 3579999999999999887765 365 999
Q ss_pred eeEeccc
Q 028885 81 MILLNIS 87 (202)
Q Consensus 81 lvli~~~ 87 (202)
++.|+-.
T Consensus 175 l~viDVV 181 (343)
T KOG2564|consen 175 LVVIDVV 181 (343)
T ss_pred eEEEEEe
Confidence 9999876
No 63
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.54 E-value=4.7e-14 Score=97.27 Aligned_cols=76 Identities=17% Similarity=0.150 Sum_probs=59.4
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-CCceEEEecChhhHHHHHHHHhCcccccceeEe
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVMEPEICRGMILL 84 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli 84 (202)
+++|+.+|++|+|.|..... +.-..++.-...+.+.+..| .++++|+|+|+|...++.+|+++| ++++||.
T Consensus 88 n~nv~~~DYSGyG~S~G~ps------E~n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~ 159 (258)
T KOG1552|consen 88 NCNVVSYDYSGYGRSSGKPS------ERNLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP--LAAVVLH 159 (258)
T ss_pred cceEEEEecccccccCCCcc------cccchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC--cceEEEe
Confidence 68999999999999998763 33344444444444444453 578999999999999999999999 9999999
Q ss_pred ccchh
Q 028885 85 NISLR 89 (202)
Q Consensus 85 ~~~~~ 89 (202)
+|..+
T Consensus 160 SPf~S 164 (258)
T KOG1552|consen 160 SPFTS 164 (258)
T ss_pred ccchh
Confidence 99643
No 64
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.52 E-value=6.6e-14 Score=105.53 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=64.9
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------cCCceEEEecChhhHHHHHHHHhCcccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
.+++|+++|++|+|.|..+.. . ......++++.++++.| +.++++||||||||.+|..++.++|++|
T Consensus 72 ~d~nVI~VDw~g~g~s~y~~a------~-~~t~~vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV 144 (442)
T TIGR03230 72 PSANVIVVDWLSRAQQHYPTS------A-AYTKLVGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKV 144 (442)
T ss_pred CCCEEEEEECCCcCCCCCccc------c-ccHHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcce
Confidence 369999999999998876542 2 23366677777777755 3679999999999999999999999999
Q ss_pred cceeEeccchhh
Q 028885 79 RGMILLNISLRM 90 (202)
Q Consensus 79 ~~lvli~~~~~~ 90 (202)
.++++++|+...
T Consensus 145 ~rItgLDPAgP~ 156 (442)
T TIGR03230 145 NRITGLDPAGPT 156 (442)
T ss_pred eEEEEEcCCCCc
Confidence 999999998543
No 65
>PRK10566 esterase; Provisional
Probab=99.50 E-value=5e-13 Score=95.32 Aligned_cols=81 Identities=15% Similarity=0.115 Sum_probs=49.0
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHh------cCCceEEEecChhhHHHHHHHHhCccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFY-TFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPEI 77 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~ 77 (202)
.+|+|+++|+||||.+......... ...+ ......+++.++++.+ +.+++.++||||||.+++.++.++|+.
T Consensus 53 ~G~~v~~~d~~g~G~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~ 131 (249)
T PRK10566 53 AGFRVIMPDAPMHGARFSGDEARRL-NHFWQILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV 131 (249)
T ss_pred CCCEEEEecCCcccccCCCccccch-hhHHHHHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe
Confidence 4799999999999986432210000 0000 0111223333333332 346899999999999999999999874
Q ss_pred ccceeEecc
Q 028885 78 CRGMILLNI 86 (202)
Q Consensus 78 v~~lvli~~ 86 (202)
...++++++
T Consensus 132 ~~~~~~~~~ 140 (249)
T PRK10566 132 KCVASLMGS 140 (249)
T ss_pred eEEEEeeCc
Confidence 444444443
No 66
>PRK11071 esterase YqiA; Provisional
Probab=99.49 E-value=2.5e-13 Score=92.69 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=55.3
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEe
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILL 84 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli 84 (202)
.+|+|+++|+|||| +++++++.+++++++.++++++||||||.+++.+|.++|. ++|++
T Consensus 31 ~~~~v~~~dl~g~~------------------~~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~---~~vl~ 89 (190)
T PRK11071 31 PDIEMIVPQLPPYP------------------ADAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCFML---PAVVV 89 (190)
T ss_pred CCCeEEeCCCCCCH------------------HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHcCC---CEEEE
Confidence 37999999999984 2478899999999999999999999999999999999983 57889
Q ss_pred ccch
Q 028885 85 NISL 88 (202)
Q Consensus 85 ~~~~ 88 (202)
+|+.
T Consensus 90 ~~~~ 93 (190)
T PRK11071 90 NPAV 93 (190)
T ss_pred CCCC
Confidence 8863
No 67
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.48 E-value=4.3e-12 Score=90.70 Aligned_cols=84 Identities=12% Similarity=0.055 Sum_probs=53.9
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc--cccce
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--ICRGM 81 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~l 81 (202)
.++|.|+.++.|||+.+....+..+ +..-.++++..+..+.+....+++..||.|+||.+...+.....+ .+.+.
T Consensus 102 ~rg~~~Vv~~~Rgcs~~~n~~p~~y---h~G~t~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa 178 (345)
T COG0429 102 RRGWLVVVFHFRGCSGEANTSPRLY---HSGETEDIRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAA 178 (345)
T ss_pred hcCCeEEEEecccccCCcccCccee---cccchhHHHHHHHHHHHhCCCCceEEEEecccHHHHHHHHHhhccCccccee
Confidence 4679999999999999988665332 122223343333333333456799999999999555555544333 36777
Q ss_pred eEeccchhh
Q 028885 82 ILLNISLRM 90 (202)
Q Consensus 82 vli~~~~~~ 90 (202)
+.++.+...
T Consensus 179 ~~vs~P~Dl 187 (345)
T COG0429 179 VAVSAPFDL 187 (345)
T ss_pred eeeeCHHHH
Confidence 777665443
No 68
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.46 E-value=3.8e-12 Score=98.00 Aligned_cols=79 Identities=14% Similarity=0.135 Sum_probs=65.3
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh----cCCceEEEecChhhHHHHH----HHHhC
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQ----AAVME 74 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~----~a~~~ 74 (202)
++.|++|+.+|+++-+.++ ...++++|++.+.+.++.+ |.++++++||||||++++. +++++
T Consensus 244 v~qG~~VflIsW~nP~~~~----------r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~ 313 (560)
T TIGR01839 244 LKNQLQVFIISWRNPDKAH----------REWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALG 313 (560)
T ss_pred HHcCCeEEEEeCCCCChhh----------cCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcC
Confidence 4678999999999976653 2468888887777666655 5789999999999999997 88999
Q ss_pred cc-cccceeEeccchhhh
Q 028885 75 PE-ICRGMILLNISLRML 91 (202)
Q Consensus 75 p~-~v~~lvli~~~~~~~ 91 (202)
++ +|++++++.+..+..
T Consensus 314 ~~~~V~sltllatplDf~ 331 (560)
T TIGR01839 314 QLRKVNSLTYLVSLLDST 331 (560)
T ss_pred CCCceeeEEeeecccccC
Confidence 86 899999999987743
No 69
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.45 E-value=2.1e-12 Score=90.40 Aligned_cols=79 Identities=24% Similarity=0.309 Sum_probs=70.8
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCC-ceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD-QAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
.+.|+|.+++||+|.+..+.. ..++-++....+.++++.++++ +++++|||.||-.|+.++..+| +.++++
T Consensus 61 ~~iR~I~iN~PGf~~t~~~~~------~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~~--~~g~~l 132 (297)
T PF06342_consen 61 AGIRFIGINYPGFGFTPGYPD------QQYTNEERQNFVNALLDELGIKGKLIFLGHSRGCENALQLAVTHP--LHGLVL 132 (297)
T ss_pred cCeEEEEeCCCCCCCCCCCcc------cccChHHHHHHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcCc--cceEEE
Confidence 469999999999999999884 6889999999999999999975 6789999999999999999996 779999
Q ss_pred eccchhhh
Q 028885 84 LNISLRML 91 (202)
Q Consensus 84 i~~~~~~~ 91 (202)
++|....+
T Consensus 133 in~~G~r~ 140 (297)
T PF06342_consen 133 INPPGLRP 140 (297)
T ss_pred ecCCcccc
Confidence 99986543
No 70
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.43 E-value=1.1e-12 Score=89.94 Aligned_cols=79 Identities=14% Similarity=0.160 Sum_probs=63.0
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HhcCCceEEEecChhhHHHHHHHHhCcc---cc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK-DVVKDQAFFICNSIGGLVGLQAAVMEPE---IC 78 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v 78 (202)
|.....++++++||+|.--... ...+++.+++.+..-+. -+..+++.++||||||++|.++|.+... .+
T Consensus 30 lp~~iel~avqlPGR~~r~~ep-------~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p 102 (244)
T COG3208 30 LPADIELLAVQLPGRGDRFGEP-------LLTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPP 102 (244)
T ss_pred CCchhheeeecCCCcccccCCc-------ccccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHHHcCCCc
Confidence 5567899999999998775544 35799999999998888 4666799999999999999999987533 26
Q ss_pred cceeEeccch
Q 028885 79 RGMILLNISL 88 (202)
Q Consensus 79 ~~lvli~~~~ 88 (202)
..+.+++...
T Consensus 103 ~~lfisg~~a 112 (244)
T COG3208 103 RALFISGCRA 112 (244)
T ss_pred ceEEEecCCC
Confidence 6677776653
No 71
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.42 E-value=3.5e-12 Score=91.10 Aligned_cols=74 Identities=26% Similarity=0.429 Sum_probs=66.5
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc----CCceEEEecChhh-HHHHHHHHhCcccccce
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV----KDQAFFICNSIGG-LVGLQAAVMEPEICRGM 81 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----~~~~~lvG~S~Gg-~~a~~~a~~~p~~v~~l 81 (202)
..||++|.|.||.|.... ..+.+.+++|+..|++..+ ..+++++|||||| .+++..+..+|+.+.++
T Consensus 81 ~~v~~vd~RnHG~Sp~~~--------~h~~~~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rl 152 (315)
T KOG2382|consen 81 RDVYAVDVRNHGSSPKIT--------VHNYEAMAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIERL 152 (315)
T ss_pred CceEEEecccCCCCcccc--------ccCHHHHHHHHHHHHHHcccccccCCceecccCcchHHHHHHHHHhcCccccee
Confidence 589999999999998866 4679999999999999885 5799999999999 88888889999999999
Q ss_pred eEeccch
Q 028885 82 ILLNISL 88 (202)
Q Consensus 82 vli~~~~ 88 (202)
|+++.++
T Consensus 153 iv~D~sP 159 (315)
T KOG2382|consen 153 IVEDISP 159 (315)
T ss_pred EEEecCC
Confidence 9998764
No 72
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.39 E-value=7.5e-12 Score=92.41 Aligned_cols=84 Identities=20% Similarity=0.106 Sum_probs=59.9
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccc--ccc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI--CRG 80 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~--v~~ 80 (202)
..++|+|+.++.||+|.|.-..++-+ .....+++.+.+..+.+.....+...+|.||||++...|..+..++ +.+
T Consensus 151 ~~~G~r~VVfN~RG~~g~~LtTpr~f---~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~ 227 (409)
T KOG1838|consen 151 QRKGYRVVVFNHRGLGGSKLTTPRLF---TAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIA 227 (409)
T ss_pred HhCCcEEEEECCCCCCCCccCCCcee---ecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCcee
Confidence 46789999999999999998776443 2334444444444444444567899999999999999999886543 556
Q ss_pred eeEeccchh
Q 028885 81 MILLNISLR 89 (202)
Q Consensus 81 lvli~~~~~ 89 (202)
.+.++.+..
T Consensus 228 a~~v~~Pwd 236 (409)
T KOG1838|consen 228 AVAVCNPWD 236 (409)
T ss_pred EEEEeccch
Confidence 666665444
No 73
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.38 E-value=2e-11 Score=91.37 Aligned_cols=80 Identities=20% Similarity=0.230 Sum_probs=67.9
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhC-----ccc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVME-----PEI 77 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~-----p~~ 77 (202)
|. ++.||..||.--+..+... ..+++++|++.+.++++++|.+ ++++|+|+||..++.+++.+ |++
T Consensus 127 l~-g~dVYl~DW~~p~~vp~~~-------~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~ 197 (406)
T TIGR01849 127 LP-DHDVYITDWVNARMVPLSA-------GKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQPAVPVLAAVALMAENEPPAQ 197 (406)
T ss_pred hC-CCcEEEEeCCCCCCCchhc-------CCCCHHHHHHHHHHHHHHhCCC-CcEEEEchhhHHHHHHHHHHHhcCCCCC
Confidence 45 8999999999888665433 4689999999999999999876 99999999999988777665 667
Q ss_pred ccceeEeccchhhh
Q 028885 78 CRGMILLNISLRML 91 (202)
Q Consensus 78 v~~lvli~~~~~~~ 91 (202)
++++++++++++..
T Consensus 198 ~~sltlm~~PID~~ 211 (406)
T TIGR01849 198 PRSMTLMGGPIDAR 211 (406)
T ss_pred cceEEEEecCccCC
Confidence 99999999987754
No 74
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.34 E-value=1.6e-12 Score=93.72 Aligned_cols=79 Identities=14% Similarity=0.054 Sum_probs=60.9
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------cCCceEEEecChhhHHHHHHHHhCcccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
.+++|+++|++|++.+..+. ...+.....+++.++++.+ +.+++++|||||||.++..++.++|++|
T Consensus 65 ~~~nVi~vD~~~~~~~~y~~-------a~~~~~~v~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v 137 (275)
T cd00707 65 GDYNVIVVDWGRGANPNYPQ-------AVNNTRVVGAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKL 137 (275)
T ss_pred CCCEEEEEECccccccChHH-------HHHhHHHHHHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCcc
Confidence 46999999999984432221 2235555666666666654 3468999999999999999999999999
Q ss_pred cceeEeccchhh
Q 028885 79 RGMILLNISLRM 90 (202)
Q Consensus 79 ~~lvli~~~~~~ 90 (202)
+++|+++|....
T Consensus 138 ~~iv~LDPa~p~ 149 (275)
T cd00707 138 GRITGLDPAGPL 149 (275)
T ss_pred ceeEEecCCccc
Confidence 999999998543
No 75
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.33 E-value=2e-11 Score=85.14 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=55.2
Q ss_pred CCcceEEEeccCCCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHHHHHh--cCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPR-DFFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
+.||.|+.+|+||.+.....-.. ..........++..+.+..+.+.- ..+++.++|||+||.+++.++.++|+++++
T Consensus 12 ~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f~a 91 (213)
T PF00326_consen 12 SQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQHPDRFKA 91 (213)
T ss_dssp TTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHTCCGSSE
T ss_pred hCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcccceeeee
Confidence 67899999999999743221100 000011223333333333333332 346799999999999999999999999999
Q ss_pred eeEeccchhh
Q 028885 81 MILLNISLRM 90 (202)
Q Consensus 81 lvli~~~~~~ 90 (202)
+|..++....
T Consensus 92 ~v~~~g~~d~ 101 (213)
T PF00326_consen 92 AVAGAGVSDL 101 (213)
T ss_dssp EEEESE-SST
T ss_pred eeccceecch
Confidence 9999997543
No 76
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.30 E-value=1.1e-10 Score=83.83 Aligned_cols=87 Identities=18% Similarity=0.247 Sum_probs=71.3
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC------CceEEEecChhhHHHHHHHHhCc-
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK------DQAFFICNSIGGLVGLQAAVMEP- 75 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~------~~~~lvG~S~Gg~~a~~~a~~~p- 75 (202)
|..++.|+++.+.||-.++...... .....++++++++...++++++-. .+++|+|||.|+.+++++..+.+
T Consensus 29 l~~~~~i~~ish~Gh~~~~~~~~~~-~~~~~~sL~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~ 107 (266)
T PF10230_consen 29 LNPQFEILGISHAGHSTSPSNSKFS-PNGRLFSLQDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPD 107 (266)
T ss_pred CCCCCeeEEecCCCCcCCccccccc-CCCCccCHHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccc
Confidence 4578999999999998777752100 114689999999999998887533 47999999999999999999999
Q ss_pred --ccccceeEeccchhh
Q 028885 76 --EICRGMILLNISLRM 90 (202)
Q Consensus 76 --~~v~~lvli~~~~~~ 90 (202)
.+|++++++-|....
T Consensus 108 ~~~~V~~~~lLfPTi~~ 124 (266)
T PF10230_consen 108 LKFRVKKVILLFPTIED 124 (266)
T ss_pred cCCceeEEEEeCCcccc
Confidence 789999999998654
No 77
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.30 E-value=6e-11 Score=88.25 Aligned_cols=79 Identities=15% Similarity=0.165 Sum_probs=54.3
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc---CCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
..|+.++++|+||.|.|....- .. +.+.+...+.+.+.... ..++.++|.|+||.+|.++|..+++|+++
T Consensus 216 ~rGiA~LtvDmPG~G~s~~~~l-----~~--D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~Rlka 288 (411)
T PF06500_consen 216 PRGIAMLTVDMPGQGESPKWPL-----TQ--DSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKA 288 (411)
T ss_dssp HCT-EEEEE--TTSGGGTTT-S------S---CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SE
T ss_pred hCCCEEEEEccCCCcccccCCC-----Cc--CHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceee
Confidence 4789999999999999865331 11 22345555555555543 35799999999999999999999999999
Q ss_pred eeEeccchh
Q 028885 81 MILLNISLR 89 (202)
Q Consensus 81 lvli~~~~~ 89 (202)
+|..++++.
T Consensus 289 vV~~Ga~vh 297 (411)
T PF06500_consen 289 VVALGAPVH 297 (411)
T ss_dssp EEEES---S
T ss_pred EeeeCchHh
Confidence 999999754
No 78
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.28 E-value=2e-11 Score=79.82 Aligned_cols=70 Identities=21% Similarity=0.261 Sum_probs=53.2
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
+.+|.|+.+|+||+|.+.. ....+.+.+++. .+..+.+++.++|||+||.+++.++.++ .+++++|+
T Consensus 24 ~~G~~v~~~~~~~~~~~~~----------~~~~~~~~~~~~--~~~~~~~~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~ 90 (145)
T PF12695_consen 24 EQGYAVVAFDYPGHGDSDG----------ADAVERVLADIR--AGYPDPDRIILIGHSMGGAIAANLAARN-PRVKAVVL 90 (145)
T ss_dssp HTTEEEEEESCTTSTTSHH----------SHHHHHHHHHHH--HHHCTCCEEEEEEETHHHHHHHHHHHHS-TTESEEEE
T ss_pred HCCCEEEEEecCCCCccch----------hHHHHHHHHHHH--hhcCCCCcEEEEEEccCcHHHHHHhhhc-cceeEEEE
Confidence 4579999999999998822 123333333332 1123567999999999999999999998 67999999
Q ss_pred ecc
Q 028885 84 LNI 86 (202)
Q Consensus 84 i~~ 86 (202)
+++
T Consensus 91 ~~~ 93 (145)
T PF12695_consen 91 LSP 93 (145)
T ss_dssp ESE
T ss_pred ecC
Confidence 999
No 79
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.23 E-value=1.6e-11 Score=96.93 Aligned_cols=80 Identities=19% Similarity=0.108 Sum_probs=66.0
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-----CCceEEEecChhhHHHHHHHHhCcccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-----KDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
+.+|.|+++|.||+|.|+.... .+. ...++|+.++++.+. ..++.++|||+||.+++.+|..+|+++
T Consensus 51 ~~Gy~vv~~D~RG~g~S~g~~~-------~~~-~~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l 122 (550)
T TIGR00976 51 AQGYAVVIQDTRGRGASEGEFD-------LLG-SDEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPAL 122 (550)
T ss_pred hCCcEEEEEeccccccCCCceE-------ecC-cccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCce
Confidence 5789999999999999987542 222 457778888887663 258999999999999999999999999
Q ss_pred cceeEeccchhhh
Q 028885 79 RGMILLNISLRML 91 (202)
Q Consensus 79 ~~lvli~~~~~~~ 91 (202)
+++|..++.....
T Consensus 123 ~aiv~~~~~~d~~ 135 (550)
T TIGR00976 123 RAIAPQEGVWDLY 135 (550)
T ss_pred eEEeecCcccchh
Confidence 9999998876543
No 80
>PLN02442 S-formylglutathione hydrolase
Probab=99.22 E-value=2.6e-10 Score=82.85 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 36 FETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 36 ~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.+++.+.+.+..+.++.++++++||||||..++.++.++|+++++++++++...
T Consensus 126 ~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~~~~~~~~ 179 (283)
T PLN02442 126 VKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVSAFAPIAN 179 (283)
T ss_pred HHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEEEECCccC
Confidence 445555555655566778899999999999999999999999999999998643
No 81
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.21 E-value=2.3e-10 Score=84.44 Aligned_cols=192 Identities=13% Similarity=0.124 Sum_probs=112.4
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccc-ccce
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI-CRGM 81 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~-v~~l 81 (202)
+..+..|+.+++++=..+..... ..+|-.+.+.+.+..+.+..+.+++.++|||.||+++..+++.++.+ |+++
T Consensus 136 ~~~g~~vfvIsw~nPd~~~~~~~-----~edYi~e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k~I~S~ 210 (445)
T COG3243 136 LEQGLDVFVISWRNPDASLAAKN-----LEDYILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAKRIKSL 210 (445)
T ss_pred HHcCCceEEEeccCchHhhhhcc-----HHHHHHHHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhcccccc
Confidence 46789999999998877766443 34555566667777777788889999999999999999999999988 9999
Q ss_pred eEeccchhhhhccCCCCCCCh-hhHHHHHHHh-ch----hHHHHHHHHhcChH-HHHHHHHHhcCCCCCCcHHHHHHHhc
Q 028885 82 ILLNISLRMLHIKKQPWYGRP-LIRSFQNLLR-NT----AAGKLFYKMVATSE-SVRNILCQCYNDTSQVTEELVEKILQ 154 (202)
Q Consensus 82 vli~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (202)
+++.+..+.........+... ....+..-+. .. ..-...+.+..... ....+............-++......
T Consensus 211 T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~~~g~lpg~~ma~~F~mLrpndliw~~fV~nyl~ge~pl~fdllyWn~d 290 (445)
T COG3243 211 TLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILPGWYMAIVFFLLRPNDLIWNYFVNNYLDGEQPLPFDLLYWNAD 290 (445)
T ss_pred eeeecchhhccccccccccCHHHHHHHHhhhhhccCCChHHHHHHHHhcCccccchHHHHHHhcCCCCCCchhHHHhhCC
Confidence 999988776543222222111 0111111111 00 01111222222222 22334444444555566555555555
Q ss_pred ccCCCCHHHH-HH-HHHhhcC----C---CCccccCCCCCcceEEeecCCCCCCC
Q 028885 155 PGLETGAADV-FL-EFICYSG----G---PLPEELLPQVKVSFFKLDQIHNMPIS 200 (202)
Q Consensus 155 ~~~~~~~~~~-~~-~~~~~~~----~---~~~~~~l~~i~~Pvl~i~G~~D~p~~ 200 (202)
..+.++.... ++ .++.... . ....-.+.+|+||++.+.|++| -|+
T Consensus 291 st~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~~VdL~~It~pvy~~a~~~D-hI~ 344 (445)
T COG3243 291 STRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGDITCPVYNLAAEED-HIA 344 (445)
T ss_pred CccCchHHHHHHHHHHHHhChhhccceEECCEEechhhcccceEEEeeccc-ccC
Confidence 5444432222 11 2221110 0 1112367899999999999999 453
No 82
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=99.13 E-value=5.8e-11 Score=90.23 Aligned_cols=82 Identities=18% Similarity=0.246 Sum_probs=60.8
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccc----c
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI----C 78 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~----v 78 (202)
|.+...+...|++|+|.+.+... ......+.+.+.++++.++.+.++++||||||||.++..++..+|+. |
T Consensus 117 L~~~GY~~~~dL~g~gYDwR~~~-----~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I 191 (440)
T PLN02733 117 LIKWGYKEGKTLFGFGYDFRQSN-----RLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYV 191 (440)
T ss_pred HHHcCCccCCCcccCCCCccccc-----cHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHh
Confidence 44333455889999999876542 11233556666666666677788999999999999999999999874 7
Q ss_pred cceeEeccchh
Q 028885 79 RGMILLNISLR 89 (202)
Q Consensus 79 ~~lvli~~~~~ 89 (202)
+++|.++++..
T Consensus 192 ~~~I~la~P~~ 202 (440)
T PLN02733 192 NSWIAIAAPFQ 202 (440)
T ss_pred ccEEEECCCCC
Confidence 88899988643
No 83
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.08 E-value=8.9e-10 Score=79.78 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=58.9
Q ss_pred cceEEEecc--CCCCCCCCCCCCCC-------------CCCCCCCHHHH-HHHHHHHHHH---hcCCceEEEecChhhHH
Q 028885 6 SHRVYSIDL--IGYGYSDKPNPRDF-------------FDKPFYTFETW-ASQLNDFCKD---VVKDQAFFICNSIGGLV 66 (202)
Q Consensus 6 ~~~v~~~D~--~G~G~S~~~~~~~~-------------~~~~~~~~~~~-~~~l~~~~~~---l~~~~~~lvG~S~Gg~~ 66 (202)
++.|+++|. +|+|.+........ .....++...+ ++++..++++ ++.+++.++||||||.+
T Consensus 72 g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~ 151 (275)
T TIGR02821 72 GLALVAPDTSPRGTGIAGEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHG 151 (275)
T ss_pred CcEEEEeCCCCCcCCCCCCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHH
Confidence 699999998 55554332110000 00012333444 5778777776 34568999999999999
Q ss_pred HHHHHHhCcccccceeEeccchh
Q 028885 67 GLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 67 a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
++.++.++|+.+++++++++...
T Consensus 152 a~~~a~~~p~~~~~~~~~~~~~~ 174 (275)
T TIGR02821 152 ALVIALKNPDRFKSVSAFAPIVA 174 (275)
T ss_pred HHHHHHhCcccceEEEEECCccC
Confidence 99999999999999999998743
No 84
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.02 E-value=3.8e-10 Score=76.09 Aligned_cols=74 Identities=20% Similarity=0.250 Sum_probs=60.4
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------cCCceEEEecChhhHHHHHHHHhCccccc
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
+..|+.+++||+|+|...+ +-+.+.-|-+++++.+ ...++++.|-|+||.+|..+|+...+++.
T Consensus 106 ~mnv~ivsYRGYG~S~Gsp----------sE~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~ 175 (300)
T KOG4391|consen 106 KMNVLIVSYRGYGKSEGSP----------SEEGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRIS 175 (300)
T ss_pred CceEEEEEeeccccCCCCc----------cccceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhhee
Confidence 4689999999999998866 3344555566666665 34589999999999999999999999999
Q ss_pred ceeEeccchh
Q 028885 80 GMILLNISLR 89 (202)
Q Consensus 80 ~lvli~~~~~ 89 (202)
++|+-++..+
T Consensus 176 ~~ivENTF~S 185 (300)
T KOG4391|consen 176 AIIVENTFLS 185 (300)
T ss_pred eeeeechhcc
Confidence 9999998644
No 85
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.00 E-value=2.7e-09 Score=74.36 Aligned_cols=84 Identities=11% Similarity=0.014 Sum_probs=54.4
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcC--CceEEEecChhhHHHHHHHHhCccccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFF---DKPFYTFETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
.+|.|+++|.+|++.+......-.. ........++.+.+..+.+..+. ++++|+|||+||.+++.++.++|+++.
T Consensus 42 ~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~ 121 (212)
T TIGR01840 42 YGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFA 121 (212)
T ss_pred CCeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhhe
Confidence 4699999999999865431100000 00011122222333333333333 579999999999999999999999999
Q ss_pred ceeEeccch
Q 028885 80 GMILLNISL 88 (202)
Q Consensus 80 ~lvli~~~~ 88 (202)
+++.+++..
T Consensus 122 ~~~~~~g~~ 130 (212)
T TIGR01840 122 GGASNAGLP 130 (212)
T ss_pred EEEeecCCc
Confidence 999988753
No 86
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=98.99 E-value=2.8e-09 Score=85.79 Aligned_cols=73 Identities=16% Similarity=0.073 Sum_probs=54.5
Q ss_pred cC-CcceEEEeccCCCCCCCCCCCCCC-----CCCC-----------CCCHHHHHHHHHHHHHHhc--------------
Q 028885 3 LA-KSHRVYSIDLIGYGYSDKPNPRDF-----FDKP-----------FYTFETWASQLNDFCKDVV-------------- 51 (202)
Q Consensus 3 L~-~~~~v~~~D~~G~G~S~~~~~~~~-----~~~~-----------~~~~~~~~~~l~~~~~~l~-------------- 51 (202)
|. .+|+|+++|+||||.|........ .... ...+...+.|+..++..++
T Consensus 472 La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~ 551 (792)
T TIGR03502 472 LAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINV 551 (792)
T ss_pred HHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 44 579999999999999965411000 0001 1378999999999988886
Q ss_pred --CCceEEEecChhhHHHHHHHHhCc
Q 028885 52 --KDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 52 --~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
..+++++||||||.++..++....
T Consensus 552 ~~~~~V~~lGHSLGgiig~~~~~~an 577 (792)
T TIGR03502 552 IDGSKVSFLGHSLGGIVGTSFIAYAN 577 (792)
T ss_pred CCCCcEEEEecCHHHHHHHHHHHhcC
Confidence 248999999999999999997643
No 87
>PLN00021 chlorophyllase
Probab=98.98 E-value=1.3e-09 Score=79.83 Aligned_cols=77 Identities=13% Similarity=-0.000 Sum_probs=51.8
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------hcCCceEEEecChhhHHHHHHHHhCcc-
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-------VVKDQAFFICNSIGGLVGLQAAVMEPE- 76 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------l~~~~~~lvG~S~Gg~~a~~~a~~~p~- 76 (202)
.+|.|+++|++|++.+.... ...+..+..+.+.+.++. .+.++++++||||||.+++.+|..+++
T Consensus 78 ~G~~VvapD~~g~~~~~~~~-------~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~ 150 (313)
T PLN00021 78 HGFIVVAPQLYTLAGPDGTD-------EIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAV 150 (313)
T ss_pred CCCEEEEecCCCcCCCCchh-------hHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhcccc
Confidence 46999999999975332111 111222233333332222 233679999999999999999999875
Q ss_pred ----cccceeEeccch
Q 028885 77 ----ICRGMILLNISL 88 (202)
Q Consensus 77 ----~v~~lvli~~~~ 88 (202)
+++++|+++|..
T Consensus 151 ~~~~~v~ali~ldPv~ 166 (313)
T PLN00021 151 SLPLKFSALIGLDPVD 166 (313)
T ss_pred ccccceeeEEeecccc
Confidence 689999999864
No 88
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.95 E-value=5e-09 Score=85.29 Aligned_cols=79 Identities=14% Similarity=-0.051 Sum_probs=61.1
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc--------------------CCceEEEecCh
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV--------------------KDQAFFICNSI 62 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--------------------~~~~~lvG~S~ 62 (202)
++.||.|+..|.||+|.|+.... .+. ..-.+|..++++-+. ..+|.++|.|+
T Consensus 276 ~~rGYaVV~~D~RGtg~SeG~~~-------~~~-~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY 347 (767)
T PRK05371 276 LPRGFAVVYVSGIGTRGSDGCPT-------TGD-YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSY 347 (767)
T ss_pred HhCCeEEEEEcCCCCCCCCCcCc-------cCC-HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcH
Confidence 35789999999999999988542 122 223445555555443 36899999999
Q ss_pred hhHHHHHHHHhCcccccceeEeccchh
Q 028885 63 GGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 63 Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
||.+++.+|+..|+.++++|.+++...
T Consensus 348 ~G~~~~~aAa~~pp~LkAIVp~a~is~ 374 (767)
T PRK05371 348 LGTLPNAVATTGVEGLETIIPEAAISS 374 (767)
T ss_pred HHHHHHHHHhhCCCcceEEEeeCCCCc
Confidence 999999999999999999999887644
No 89
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.93 E-value=4.6e-09 Score=84.13 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=58.3
Q ss_pred cCCcceEEEeccCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHhcC---CceEEEecChhhHHHHHHHHhCcccc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKP-NPRDFFDKPFYTFETWASQLNDFCKDVVK---DQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~---~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
.+.+|.|+.++.||-+.-... ......+......+++.+.+. ++++.+. +++.+.|||.||.+++..+.+.| ++
T Consensus 420 ~~~G~~V~~~n~RGS~GyG~~F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f 497 (620)
T COG1506 420 ASAGYAVLAPNYRGSTGYGREFADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RF 497 (620)
T ss_pred hcCCeEEEEeCCCCCCccHHHHHHhhhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hh
Confidence 357899999999976442111 000000124457777777777 5555543 47999999999999999999998 68
Q ss_pred cceeEeccch
Q 028885 79 RGMILLNISL 88 (202)
Q Consensus 79 ~~lvli~~~~ 88 (202)
++.|...+..
T Consensus 498 ~a~~~~~~~~ 507 (620)
T COG1506 498 KAAVAVAGGV 507 (620)
T ss_pred heEEeccCcc
Confidence 8887777753
No 90
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=98.92 E-value=9e-09 Score=69.47 Aligned_cols=76 Identities=20% Similarity=0.197 Sum_probs=59.6
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCc---eEEEecChhhHHHHHHHHhCcccccce
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ---AFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~---~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
.++.++.+|.+|.|+|...- ..-.....++|+..+++++.... -+++|||-||.+++.++..+.+ ++-+
T Consensus 61 ~gis~fRfDF~GnGeS~gsf-------~~Gn~~~eadDL~sV~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~v 132 (269)
T KOG4667|consen 61 EGISAFRFDFSGNGESEGSF-------YYGNYNTEADDLHSVIQYFSNSNRVVPVILGHSKGGDVVLLYASKYHD-IRNV 132 (269)
T ss_pred cCceEEEEEecCCCCcCCcc-------ccCcccchHHHHHHHHHHhccCceEEEEEEeecCccHHHHHHHHhhcC-chhe
Confidence 46899999999999998754 22344455699999999986432 3589999999999999999988 7777
Q ss_pred eEeccch
Q 028885 82 ILLNISL 88 (202)
Q Consensus 82 vli~~~~ 88 (202)
|-+++-+
T Consensus 133 iNcsGRy 139 (269)
T KOG4667|consen 133 INCSGRY 139 (269)
T ss_pred EEccccc
Confidence 6666643
No 91
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.90 E-value=8.3e-09 Score=72.69 Aligned_cols=76 Identities=22% Similarity=0.301 Sum_probs=61.3
Q ss_pred cCCc-ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCC-ceEEEecChhhHHHHHHHHhC---ccc
Q 028885 3 LAKS-HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKD-QAFFICNSIGGLVGLQAAVME---PEI 77 (202)
Q Consensus 3 L~~~-~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~lvG~S~Gg~~a~~~a~~~---p~~ 77 (202)
|... +.|+.++.+|.+.... ...+++++++...+.+.....+ ++.|+|||+||.+|.++|.+- -..
T Consensus 23 l~~~~~~v~~i~~~~~~~~~~---------~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~ 93 (229)
T PF00975_consen 23 LPDDVIGVYGIEYPGRGDDEP---------PPDSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEAGEE 93 (229)
T ss_dssp HTTTEEEEEEECSTTSCTTSH---------EESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHTT-S
T ss_pred CCCCeEEEEEEecCCCCCCCC---------CCCCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHhhhc
Confidence 4565 8999999999983322 3469999999888888776655 999999999999999999764 345
Q ss_pred ccceeEeccc
Q 028885 78 CRGMILLNIS 87 (202)
Q Consensus 78 v~~lvli~~~ 87 (202)
|..++++++.
T Consensus 94 v~~l~liD~~ 103 (229)
T PF00975_consen 94 VSRLILIDSP 103 (229)
T ss_dssp ESEEEEESCS
T ss_pred cCceEEecCC
Confidence 8999999965
No 92
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=98.81 E-value=2.3e-08 Score=86.73 Aligned_cols=77 Identities=13% Similarity=0.027 Sum_probs=66.1
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC-CceEEEecChhhHHHHHHHHh---Cccc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-DQAFFICNSIGGLVGLQAAVM---EPEI 77 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~lvG~S~Gg~~a~~~a~~---~p~~ 77 (202)
.|+.+++|+++|.+|+|.+.. ..++++++++++.+.++.+.. ++++++||||||.++.++|.+ .+++
T Consensus 1090 ~l~~~~~v~~~~~~g~~~~~~---------~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~ 1160 (1296)
T PRK10252 1090 YLDPQWSIYGIQSPRPDGPMQ---------TATSLDEVCEAHLATLLEQQPHGPYHLLGYSLGGTLAQGIAARLRARGEE 1160 (1296)
T ss_pred hcCCCCcEEEEECCCCCCCCC---------CCCCHHHHHHHHHHHHHhhCCCCCEEEEEechhhHHHHHHHHHHHHcCCc
Confidence 467889999999999986532 357999999999999988754 589999999999999999986 5788
Q ss_pred ccceeEeccc
Q 028885 78 CRGMILLNIS 87 (202)
Q Consensus 78 v~~lvli~~~ 87 (202)
+..++++++.
T Consensus 1161 v~~l~l~~~~ 1170 (1296)
T PRK10252 1161 VAFLGLLDTW 1170 (1296)
T ss_pred eeEEEEecCC
Confidence 9999999874
No 93
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.74 E-value=3.2e-08 Score=71.60 Aligned_cols=80 Identities=16% Similarity=0.051 Sum_probs=57.4
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-----CCceEEEecChhhHHHHHHHHhCcccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-----KDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-----~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
+.+|.|+..|.||.|.|+.... .....-++|..++++-+. ..+|-++|.|.+|...+..|+..|..+
T Consensus 55 ~~GY~vV~~D~RG~g~S~G~~~--------~~~~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~L 126 (272)
T PF02129_consen 55 ERGYAVVVQDVRGTGGSEGEFD--------PMSPNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHL 126 (272)
T ss_dssp HTT-EEEEEE-TTSTTS-S-B---------TTSHHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTE
T ss_pred hCCCEEEEECCcccccCCCccc--------cCChhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCc
Confidence 5689999999999999998652 113445556666655442 247999999999999999999888899
Q ss_pred cceeEeccchhhh
Q 028885 79 RGMILLNISLRML 91 (202)
Q Consensus 79 ~~lvli~~~~~~~ 91 (202)
++++...+.....
T Consensus 127 kAi~p~~~~~d~~ 139 (272)
T PF02129_consen 127 KAIVPQSGWSDLY 139 (272)
T ss_dssp EEEEEESE-SBTC
T ss_pred eEEEecccCCccc
Confidence 9999998876544
No 94
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.73 E-value=1.3e-07 Score=66.24 Aligned_cols=74 Identities=15% Similarity=0.155 Sum_probs=50.2
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHH----HHHHHHHHHh-----cCCceEEEecChhhHHHHHHHHhCc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWA----SQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~l-----~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
.+++++++|+......-. ..++.+.. +.+..+++.+ +.+++++|||||||.++..++...+
T Consensus 38 ~~~d~ft~df~~~~s~~~----------g~~l~~q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~ 107 (225)
T PF07819_consen 38 SHFDFFTVDFNEELSAFH----------GRTLQRQAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPN 107 (225)
T ss_pred cceeEEEeccCccccccc----------cccHHHHHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccc
Confidence 357888888776532211 12333333 3444455555 4578999999999999998887654
Q ss_pred ---ccccceeEeccch
Q 028885 76 ---EICRGMILLNISL 88 (202)
Q Consensus 76 ---~~v~~lvli~~~~ 88 (202)
+.|+.+|.++++-
T Consensus 108 ~~~~~v~~iitl~tPh 123 (225)
T PF07819_consen 108 YDPDSVKTIITLGTPH 123 (225)
T ss_pred cccccEEEEEEEcCCC
Confidence 4799999999863
No 95
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.70 E-value=1.1e-07 Score=68.26 Aligned_cols=77 Identities=9% Similarity=0.047 Sum_probs=46.9
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh--------cCCceEEEecChhhHHHHHHHHhCc-
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV--------VKDQAFFICNSIGGLVGLQAAVMEP- 75 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l--------~~~~~~lvG~S~Gg~~a~~~a~~~p- 75 (202)
.+|.|+-+-++-- ... +...+++.=++|+.++++.+ +.++++|+|||.|+.-++.|+....
T Consensus 62 ~~wsl~q~~LsSS----y~G------~G~~SL~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~ 131 (303)
T PF08538_consen 62 TGWSLFQVQLSSS----YSG------WGTSSLDRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNP 131 (303)
T ss_dssp TT-EEEEE--GGG----BTT------S-S--HHHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT
T ss_pred CCeEEEEEEecCc----cCC------cCcchhhhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCc
Confidence 3677777765431 111 23346666677777766654 2458999999999999999998753
Q ss_pred ----ccccceeEeccchhhh
Q 028885 76 ----EICRGMILLNISLRML 91 (202)
Q Consensus 76 ----~~v~~lvli~~~~~~~ 91 (202)
..|+++||.+|+.+.+
T Consensus 132 ~~~~~~VdG~ILQApVSDRE 151 (303)
T PF08538_consen 132 SPSRPPVDGAILQAPVSDRE 151 (303)
T ss_dssp ---CCCEEEEEEEEE---TT
T ss_pred cccccceEEEEEeCCCCChh
Confidence 5699999999987754
No 96
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.69 E-value=1.8e-07 Score=64.73 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=58.9
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-hcCCceEEEecChhhHHHHHHHHh---Cccc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-VVKDQAFFICNSIGGLVGLQAAVM---EPEI 77 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~~lvG~S~Gg~~a~~~a~~---~p~~ 77 (202)
.|...+.|+++|.+|++.+.... .+.+.+++.+...+.. ....+++++|||+||.++..++.+ .++.
T Consensus 21 ~l~~~~~v~~~~~~g~~~~~~~~---------~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~ 91 (212)
T smart00824 21 ALRGRRDVSALPLPGFGPGEPLP---------ASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLAHAVAARLEARGIP 91 (212)
T ss_pred hcCCCccEEEecCCCCCCCCCCC---------CCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHHHHHHHHHHhCCCC
Confidence 35667899999999998765433 4667777765554443 446789999999999999998886 4567
Q ss_pred ccceeEeccc
Q 028885 78 CRGMILLNIS 87 (202)
Q Consensus 78 v~~lvli~~~ 87 (202)
+.+++++++.
T Consensus 92 ~~~l~~~~~~ 101 (212)
T smart00824 92 PAAVVLLDTY 101 (212)
T ss_pred CcEEEEEccC
Confidence 9999999875
No 97
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.66 E-value=1.8e-08 Score=68.83 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=55.1
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHHh----cCCceEEEecChhhHHHHHHHHhCcccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWA-SQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
..+|.|.++|+||.|.|+..... ...+.+.+++ .|+.+.++.+ ...+...||||+||.+.-.+. ++| +.
T Consensus 55 ~~Gf~Vlt~dyRG~g~S~p~~~~----~~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~-~~~-k~ 128 (281)
T COG4757 55 KAGFEVLTFDYRGIGQSRPASLS----GSQWRYLDWARLDFPAALAALKKALPGHPLYFVGHSFGGQALGLLG-QHP-KY 128 (281)
T ss_pred ccCceEEEEecccccCCCccccc----cCccchhhhhhcchHHHHHHHHhhCCCCceEEeeccccceeecccc-cCc-cc
Confidence 35799999999999999987643 2456666666 4565555554 446899999999998766555 455 55
Q ss_pred cceeEeccc
Q 028885 79 RGMILLNIS 87 (202)
Q Consensus 79 ~~lvli~~~ 87 (202)
.+....+..
T Consensus 129 ~a~~vfG~g 137 (281)
T COG4757 129 AAFAVFGSG 137 (281)
T ss_pred ceeeEeccc
Confidence 555555544
No 98
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.62 E-value=1.4e-07 Score=68.84 Aligned_cols=73 Identities=23% Similarity=0.334 Sum_probs=66.6
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEec
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 85 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~ 85 (202)
|.||++.+||+|-|+.+.. ..++....+.-++.++=.||..++.+=|-.||+.|+..+|..+|++|.|+=+-.
T Consensus 189 FEVI~PSlPGygwSd~~sk------~GFn~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~GlHlnm 261 (469)
T KOG2565|consen 189 FEVIAPSLPGYGWSDAPSK------TGFNAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLNM 261 (469)
T ss_pred EEEeccCCCCcccCcCCcc------CCccHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhHhhhcc
Confidence 7999999999999999884 667888899999999999999999999999999999999999999999865443
No 99
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.58 E-value=1.1e-06 Score=64.73 Aligned_cols=85 Identities=19% Similarity=0.083 Sum_probs=51.4
Q ss_pred CCcceEEEeccCCCCC-CCCCCCC------C-----CCC-CCCCCHHHHHHHHHHHHHHhc------CCceEEEecChhh
Q 028885 4 AKSHRVYSIDLIGYGY-SDKPNPR------D-----FFD-KPFYTFETWASQLNDFCKDVV------KDQAFFICNSIGG 64 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~-S~~~~~~------~-----~~~-~~~~~~~~~~~~l~~~~~~l~------~~~~~lvG~S~Gg 64 (202)
..+|.|+.+|.||+|. |...... . ... ...+-......|....++.+. .+++.+.|.|.||
T Consensus 107 ~~G~~vl~~d~rGqg~~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG 186 (320)
T PF05448_consen 107 AAGYAVLAMDVRGQGGRSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGG 186 (320)
T ss_dssp HTT-EEEEE--TTTSSSS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHH
T ss_pred cCCeEEEEecCCCCCCCCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCch
Confidence 3679999999999993 3221110 0 000 122223334455554454432 3579999999999
Q ss_pred HHHHHHHHhCcccccceeEeccchh
Q 028885 65 LVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 65 ~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.+++..|+..| +|+++++..|...
T Consensus 187 ~lal~~aaLd~-rv~~~~~~vP~l~ 210 (320)
T PF05448_consen 187 GLALAAAALDP-RVKAAAADVPFLC 210 (320)
T ss_dssp HHHHHHHHHSS-T-SEEEEESESSS
T ss_pred HHHHHHHHhCc-cccEEEecCCCcc
Confidence 99999999987 5999999988643
No 100
>PRK10115 protease 2; Provisional
Probab=98.56 E-value=8.8e-07 Score=71.90 Aligned_cols=88 Identities=18% Similarity=0.136 Sum_probs=63.3
Q ss_pred cCCcceEEEeccCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHh--cCCceEEEecChhhHHHHHHHHhCccccc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNP-RDFFDKPFYTFETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
++.||.|+.++.||-|.=...-- .........+++++++.+..++++= ..+++.+.|.|.||.++...+.++|++++
T Consensus 471 ~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~ 550 (686)
T PRK10115 471 LDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFH 550 (686)
T ss_pred HHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhhee
Confidence 56899999999999754442110 0000012356777776666665441 23579999999999999999999999999
Q ss_pred ceeEeccchhh
Q 028885 80 GMILLNISLRM 90 (202)
Q Consensus 80 ~lvli~~~~~~ 90 (202)
++|...|....
T Consensus 551 A~v~~vp~~D~ 561 (686)
T PRK10115 551 GVIAQVPFVDV 561 (686)
T ss_pred EEEecCCchhH
Confidence 99999997654
No 101
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=98.53 E-value=1.7e-07 Score=54.28 Aligned_cols=39 Identities=21% Similarity=0.406 Sum_probs=33.0
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK 48 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 48 (202)
+.+|.|+++|+||||+|+... ...-+++++++|+.++++
T Consensus 41 ~~G~~V~~~D~rGhG~S~g~r------g~~~~~~~~v~D~~~~~~ 79 (79)
T PF12146_consen 41 EQGYAVFAYDHRGHGRSEGKR------GHIDSFDDYVDDLHQFIQ 79 (79)
T ss_pred hCCCEEEEECCCcCCCCCCcc------cccCCHHHHHHHHHHHhC
Confidence 467999999999999999755 356689999999998864
No 102
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.52 E-value=3.1e-07 Score=66.50 Aligned_cols=76 Identities=17% Similarity=0.071 Sum_probs=58.4
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHhcC--CceEEEecChhhHHHHHHHHhCcccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFC-KDVVK--DQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~--~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
.-+|.|+.+++||++.|...+ ....-..-++.+.++. +.|+. +.+++.|+|.||.-++..|..||+ |++
T Consensus 266 ~lgYsvLGwNhPGFagSTG~P-------~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPd-Vka 337 (517)
T KOG1553|consen 266 QLGYSVLGWNHPGFAGSTGLP-------YPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPD-VKA 337 (517)
T ss_pred HhCceeeccCCCCccccCCCC-------CcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCC-ceE
Confidence 458999999999999998865 2223333344455543 44554 579999999999999999999998 999
Q ss_pred eeEeccc
Q 028885 81 MILLNIS 87 (202)
Q Consensus 81 lvli~~~ 87 (202)
+||=++.
T Consensus 338 vvLDAtF 344 (517)
T KOG1553|consen 338 VVLDATF 344 (517)
T ss_pred EEeecch
Confidence 9988775
No 103
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.52 E-value=5.3e-06 Score=63.48 Aligned_cols=61 Identities=21% Similarity=0.342 Sum_probs=51.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhc-----CCceEEEecChhhHHHHHHHHhCcccccceeEeccchhhh
Q 028885 31 KPFYTFETWASQLNDFCKDVV-----KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRML 91 (202)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~l~-----~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~~ 91 (202)
...-|+++......+|++++. ..+.+|||.+.||..++.+|+.+|+.+.-+|+-+.+.++.
T Consensus 113 ~pgQTl~DV~~ae~~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsyw 178 (581)
T PF11339_consen 113 EPGQTLEDVMRAEAAFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYW 178 (581)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCcccc
Confidence 345689998888888887653 2389999999999999999999999999999988876654
No 104
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=98.49 E-value=2.1e-07 Score=62.30 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHH-HhCcccccceeEeccch
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA-VMEPEICRGMILLNISL 88 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a-~~~p~~v~~lvli~~~~ 88 (202)
..+.+.+.+.+.+.+..+ .++++|||||+|+..+++++ .....+|++++|++|.-
T Consensus 36 ~P~~~~W~~~l~~~i~~~-~~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~ 91 (171)
T PF06821_consen 36 NPDLDEWVQALDQAIDAI-DEPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFD 91 (171)
T ss_dssp S--HHHHHHHHHHCCHC--TTTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--S
T ss_pred CCCHHHHHHHHHHHHhhc-CCCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCC
Confidence 357788888888877766 46799999999999999999 77888999999999973
No 105
>PRK10162 acetyl esterase; Provisional
Probab=98.49 E-value=5.6e-07 Score=66.61 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=51.9
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHH---HHHHHHHhcC--CceEEEecChhhHHHHHHHHhC-----
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQ---LNDFCKDVVK--DQAFFICNSIGGLVGLQAAVME----- 74 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~~~----- 74 (202)
.++.|+++|+|.......+ ...++..+. +.+..+.++. ++++++|+|+||.+++.++.+.
T Consensus 111 ~g~~Vv~vdYrlape~~~p----------~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~ 180 (318)
T PRK10162 111 SGCTVIGIDYTLSPEARFP----------QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQI 180 (318)
T ss_pred cCCEEEEecCCCCCCCCCC----------CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCC
Confidence 3799999999976443222 233443333 3333445554 5899999999999999998753
Q ss_pred -cccccceeEeccchh
Q 028885 75 -PEICRGMILLNISLR 89 (202)
Q Consensus 75 -p~~v~~lvli~~~~~ 89 (202)
+.+++++|++.|...
T Consensus 181 ~~~~~~~~vl~~p~~~ 196 (318)
T PRK10162 181 DCGKVAGVLLWYGLYG 196 (318)
T ss_pred CccChhheEEECCccC
Confidence 357999999988644
No 106
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.48 E-value=7.4e-07 Score=59.36 Aligned_cols=80 Identities=16% Similarity=0.170 Sum_probs=55.3
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCc-eEEEecChhhHHHHHHHHhCccccccee
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQAAVMEPEICRGMI 82 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~lvG~S~Gg~~a~~~a~~~p~~v~~lv 82 (202)
..+|.++.+|.||-|.|...-+. ..-..++....+.-+.++....+ ..+.|+|+|+.|++.+|.+.|+ ....+
T Consensus 58 ~~G~atlRfNfRgVG~S~G~fD~-----GiGE~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e-~~~~i 131 (210)
T COG2945 58 KRGFATLRFNFRGVGRSQGEFDN-----GIGELEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPE-ILVFI 131 (210)
T ss_pred hCCceEEeecccccccccCcccC-----CcchHHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhccc-cccee
Confidence 35799999999999999886642 23344444444433333333333 3689999999999999999987 66666
Q ss_pred Eeccchh
Q 028885 83 LLNISLR 89 (202)
Q Consensus 83 li~~~~~ 89 (202)
.+.|.+.
T Consensus 132 s~~p~~~ 138 (210)
T COG2945 132 SILPPIN 138 (210)
T ss_pred eccCCCC
Confidence 6666543
No 107
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=98.48 E-value=8.9e-07 Score=68.56 Aligned_cols=83 Identities=16% Similarity=0.083 Sum_probs=62.1
Q ss_pred cCCcceEEEeccC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------cCCceEEEecChhhHHHHHHHHhC
Q 028885 3 LAKSHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 3 L~~~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-------~~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
+.+...++.+|.| |+|.|..... ....+.++.++|+.++++.. +..+++|+|||+||.++..+|..-
T Consensus 118 W~~~~~~l~iDqP~G~G~S~~~~~-----~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i 192 (462)
T PTZ00472 118 WNNEAYVIYVDQPAGVGFSYADKA-----DYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRI 192 (462)
T ss_pred cccccCeEEEeCCCCcCcccCCCC-----CCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHH
Confidence 4456789999975 9999976542 13456688888888888743 457999999999999998887652
Q ss_pred ----------cccccceeEeccchhh
Q 028885 75 ----------PEICRGMILLNISLRM 90 (202)
Q Consensus 75 ----------p~~v~~lvli~~~~~~ 90 (202)
.-.++|+++-++....
T Consensus 193 ~~~n~~~~~~~inLkGi~IGNg~~dp 218 (462)
T PTZ00472 193 NMGNKKGDGLYINLAGLAVGNGLTDP 218 (462)
T ss_pred HhhccccCCceeeeEEEEEeccccCh
Confidence 1248899998887553
No 108
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.46 E-value=1.1e-06 Score=62.39 Aligned_cols=78 Identities=23% Similarity=0.308 Sum_probs=62.4
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-CCceEEEecChhhHHHHHHHHhC---cccc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVME---PEIC 78 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~~---p~~v 78 (202)
|.....|+.++.||.|.-.. ..-+++++++...+.+.... ..+++|+|||+||.+|...|.+- -+.|
T Consensus 23 l~~~~~v~~l~a~g~~~~~~---------~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL~~~G~~V 93 (257)
T COG3319 23 LGPLLPVYGLQAPGYGAGEQ---------PFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQLEAQGEEV 93 (257)
T ss_pred hccCceeeccccCccccccc---------ccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccHHHHHHHHHHHhCCCeE
Confidence 45668899999999986433 24689999987776666654 56999999999999999999763 4569
Q ss_pred cceeEeccchh
Q 028885 79 RGMILLNISLR 89 (202)
Q Consensus 79 ~~lvli~~~~~ 89 (202)
..++++++...
T Consensus 94 a~L~llD~~~~ 104 (257)
T COG3319 94 AFLGLLDAVPP 104 (257)
T ss_pred EEEEEeccCCC
Confidence 99999999755
No 109
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.45 E-value=9.9e-07 Score=57.94 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 31 KPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
....+.++|++.+.+.+... .++++||+||+|+..++.++.+....|+|+.|++|+
T Consensus 38 w~~P~~~dWi~~l~~~v~a~-~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVApp 93 (181)
T COG3545 38 WEAPVLDDWIARLEKEVNAA-EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPP 93 (181)
T ss_pred CCCCCHHHHHHHHHHHHhcc-CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCC
Confidence 45678899999999888888 567999999999999999999988899999999997
No 110
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=98.39 E-value=6e-07 Score=62.84 Aligned_cols=80 Identities=15% Similarity=0.069 Sum_probs=48.7
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCC------CHHHHHHHHHHHHHHhc------CCceEEEecChhhHHHHHHH
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFY------TFETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~l~------~~~~~lvG~S~Gg~~a~~~a 71 (202)
+.+|.|+++|+-+-........... ...+ ..+...+++.+.++.+. .+++.++|+||||.+++.++
T Consensus 39 ~~Gy~v~~pD~f~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a 116 (218)
T PF01738_consen 39 EEGYVVLAPDLFGGRGAPPSDPEEA--FAAMRELFAPRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLA 116 (218)
T ss_dssp HTT-EEEEE-CCCCTS--CCCHHCH--HHHHHHCHHHSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHH
T ss_pred hcCCCEEecccccCCCCCccchhhH--HHHHHHHHhhhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhh
Confidence 3579999999865544111110000 0000 13455666666666553 35799999999999999999
Q ss_pred HhCcccccceeEecc
Q 028885 72 VMEPEICRGMILLNI 86 (202)
Q Consensus 72 ~~~p~~v~~lvli~~ 86 (202)
.+. +.++++|..-|
T Consensus 117 ~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 117 ARD-PRVDAAVSFYG 130 (218)
T ss_dssp CCT-TTSSEEEEES-
T ss_pred hhc-cccceEEEEcC
Confidence 887 56888887766
No 111
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.38 E-value=1.6e-06 Score=58.88 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=46.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.....+...+.+.+++++...+.+.|||.||||..|..+|.+++ +++ |++||...
T Consensus 38 l~~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~ 92 (187)
T PF05728_consen 38 LPPFPEEAIAQLEQLIEELKPENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVR 92 (187)
T ss_pred CCcCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCC
Confidence 34567777888889999888778999999999999999999985 444 99999754
No 112
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.37 E-value=1.5e-07 Score=65.50 Aligned_cols=51 Identities=20% Similarity=0.127 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhc---CCceEEEecChhhHHHHHHHHhCcccccceeEeccchhh
Q 028885 39 WASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (202)
Q Consensus 39 ~~~~l~~~~~~l~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~ 90 (202)
+.+...+++++.. .+++.|+|.|.||-+|+.+|+.+| .|+.+|.++|+...
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~ 58 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVV 58 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB-
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeE
Confidence 3344445555442 358999999999999999999999 69999999998543
No 113
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.35 E-value=2.7e-06 Score=59.76 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=57.3
Q ss_pred CCcceEEEeccCCCCCCCCC----CCC-CC---------CCCCCCCHHHHHHHHHHHHHH------hcCCceEEEecChh
Q 028885 4 AKSHRVYSIDLIGYGYSDKP----NPR-DF---------FDKPFYTFETWASQLNDFCKD------VVKDQAFFICNSIG 63 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~----~~~-~~---------~~~~~~~~~~~~~~l~~~~~~------l~~~~~~lvG~S~G 63 (202)
+.+|.|+..|-||.|.|... ... .. +....|-......|+.+.++. ...+++.+.|.|.|
T Consensus 107 ~~Gyavf~MdvRGQg~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqG 186 (321)
T COG3458 107 VAGYAVFVMDVRGQGSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQG 186 (321)
T ss_pred ccceeEEEEecccCCCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccC
Confidence 46899999999999988541 111 00 001222223333344444443 34568999999999
Q ss_pred hHHHHHHHHhCcccccceeEeccchh
Q 028885 64 GLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 64 g~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
|.+++..++..| ++++++.+-|..+
T Consensus 187 Gglalaaaal~~-rik~~~~~~Pfl~ 211 (321)
T COG3458 187 GGLALAAAALDP-RIKAVVADYPFLS 211 (321)
T ss_pred chhhhhhhhcCh-hhhcccccccccc
Confidence 999999999987 6999999988644
No 114
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.34 E-value=2.1e-06 Score=62.37 Aligned_cols=61 Identities=18% Similarity=0.199 Sum_probs=49.7
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-------CCceEEEecChhhHHHHHHHHhCc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-------~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
.+-+|+.+++||.|.|.... +.++++.|-.+.++.|. .+.+++.|||+||.++...+.++.
T Consensus 170 ~~aNvl~fNYpGVg~S~G~~----------s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 170 LGANVLVFNYPGVGSSTGPP----------SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred cCCcEEEECCCccccCCCCC----------CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 35789999999999996644 56889988888887763 257999999999999998766653
No 115
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.31 E-value=1.9e-06 Score=61.31 Aligned_cols=58 Identities=12% Similarity=0.041 Sum_probs=44.6
Q ss_pred CCHHHHHHHHHHHHHHh----cCCceEEEecChhhHHHHHHHHhCcc-----cccceeEeccchhhh
Q 028885 34 YTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE-----ICRGMILLNISLRML 91 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~~p~-----~v~~lvli~~~~~~~ 91 (202)
.+....++.+..++..| +.+++.+|||||||+.++.|+..+.. .+.++|.|++++...
T Consensus 80 ~~~~~qa~wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 80 ANYKKQAKWLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFNGI 146 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TTTT
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccCcc
Confidence 46777888888887776 46799999999999999999988532 489999999976543
No 116
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.30 E-value=2e-06 Score=66.46 Aligned_cols=85 Identities=16% Similarity=0.129 Sum_probs=61.5
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-------CCceEEEecChhhHHHHHHHHhCcccc
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-------KDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-------~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
+--|+++.+|-+|+|.+..+.....-...|.+.-.+|+..|++++. ..|++++|-|.||++|..+-.+||+.|
T Consensus 59 ~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~ 138 (434)
T PF05577_consen 59 GALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLF 138 (434)
T ss_dssp TEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-
T ss_pred CCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCee
Confidence 3568999999999998754332222356799999999999998765 138999999999999999999999999
Q ss_pred cceeEeccchhh
Q 028885 79 RGMILLNISLRM 90 (202)
Q Consensus 79 ~~lvli~~~~~~ 90 (202)
.+.+..+++...
T Consensus 139 ~ga~ASSapv~a 150 (434)
T PF05577_consen 139 DGAWASSAPVQA 150 (434)
T ss_dssp SEEEEET--CCH
T ss_pred EEEEeccceeee
Confidence 999999887553
No 117
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=98.30 E-value=3.2e-05 Score=58.48 Aligned_cols=86 Identities=14% Similarity=0.078 Sum_probs=64.9
Q ss_pred CcceEEEeccCCCCCCCCCCCCC---CCCCCCCCHHHHH-HHHHHHHHHh----cCCceEEEecChhhHHHHHHHHhCcc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRD---FFDKPFYTFETWA-SQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~---~~~~~~~~~~~~~-~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
.+|.|..-+.||.-.|..-.... .....++++++++ .||-+.++.+ +.++++.||||.|++....+.+..|+
T Consensus 105 aGYDVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 105 AGYDVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred cCCceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccch
Confidence 57999999999988777521100 1113667777766 4666666554 55789999999999999999998876
Q ss_pred ---cccceeEeccchhh
Q 028885 77 ---ICRGMILLNISLRM 90 (202)
Q Consensus 77 ---~v~~lvli~~~~~~ 90 (202)
+|+.+++++|....
T Consensus 185 ~~~kI~~~~aLAP~~~~ 201 (403)
T KOG2624|consen 185 YNKKIKSFIALAPAAFP 201 (403)
T ss_pred hhhhhheeeeecchhhh
Confidence 79999999999754
No 118
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.23 E-value=1.8e-05 Score=57.83 Aligned_cols=82 Identities=20% Similarity=0.101 Sum_probs=53.1
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---Hhc---CCceEEEecChhhHHHHHHHHh--
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK---DVV---KDQAFFICNSIGGLVGLQAAVM-- 73 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~l~---~~~~~lvG~S~Gg~~a~~~a~~-- 73 (202)
.|+.+|.|+++|+.|.|..-. . ....-....+.+++..+ ..+ ..++.++|||-||.-++..+..
T Consensus 22 ~L~~GyaVv~pDY~Glg~~y~-~-------~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l~~ 93 (290)
T PF03583_consen 22 WLARGYAVVAPDYEGLGTPYL-N-------GRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAELAP 93 (290)
T ss_pred HHHCCCEEEecCCCCCCCccc-C-------cHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHHhH
Confidence 478999999999999998221 1 12222333344444432 223 2479999999999888766644
Q ss_pred --Cccc---ccceeEeccchhhh
Q 028885 74 --EPEI---CRGMILLNISLRML 91 (202)
Q Consensus 74 --~p~~---v~~lvli~~~~~~~ 91 (202)
.||. +.+.+..+++.+..
T Consensus 94 ~YApeL~~~l~Gaa~gg~~~dl~ 116 (290)
T PF03583_consen 94 SYAPELNRDLVGAAAGGPPADLA 116 (290)
T ss_pred HhCcccccceeEEeccCCccCHH
Confidence 3553 78888877765543
No 119
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.12 E-value=6.2e-06 Score=58.38 Aligned_cols=78 Identities=18% Similarity=0.094 Sum_probs=50.5
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-Hh------cCCceEEEecChhhHHHHHHHHhC--
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK-DV------VKDQAFFICNSIGGLVGLQAAVME-- 74 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l------~~~~~~lvG~S~Gg~~a~~~a~~~-- 74 (202)
+.+|-|+++|+...+...... ........++.+.+=++ .+ ...++.|.|||-||-++..++..+
T Consensus 42 ShGyIVV~~d~~~~~~~~~~~-------~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~ 114 (259)
T PF12740_consen 42 SHGYIVVAPDLYSIGGPDDTD-------EVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNAS 114 (259)
T ss_pred hCceEEEEecccccCCCCcch-------hHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcc
Confidence 356999999976644321111 11122222222222111 11 235799999999999999999998
Q ss_pred ---cccccceeEeccch
Q 028885 75 ---PEICRGMILLNISL 88 (202)
Q Consensus 75 ---p~~v~~lvli~~~~ 88 (202)
+.+++++|+++|.-
T Consensus 115 ~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 115 SSLDLRFSALILLDPVD 131 (259)
T ss_pred cccccceeEEEEecccc
Confidence 56899999999985
No 120
>PRK11460 putative hydrolase; Provisional
Probab=98.12 E-value=8.9e-06 Score=57.50 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=31.3
Q ss_pred CceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
++++++|||+||.+++.++..+|+.+.++|.+++.
T Consensus 103 ~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~ 137 (232)
T PRK11460 103 SATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGR 137 (232)
T ss_pred hhEEEEEECHHHHHHHHHHHhCCCcceEEEEeccc
Confidence 47999999999999999999999988888887764
No 121
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.08 E-value=7.5e-06 Score=56.92 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=49.9
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-----hcCCceEEEecChhhHHHHHHHHhCccc--
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-----VVKDQAFFICNSIGGLVGLQAAVMEPEI-- 77 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----l~~~~~~lvG~S~Gg~~a~~~a~~~p~~-- 77 (202)
.++.|+.+|+|=..+.. ..-.+++..+.+..+++. .+.++++++|+|.||.+++.++....+.
T Consensus 28 ~g~~v~~~~Yrl~p~~~----------~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~ 97 (211)
T PF07859_consen 28 RGFVVVSIDYRLAPEAP----------FPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGL 97 (211)
T ss_dssp HTSEEEEEE---TTTSS----------TTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTT
T ss_pred ccEEEEEeecccccccc----------ccccccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcc
Confidence 47899999999432111 223444555555555554 3356899999999999999999875553
Q ss_pred --ccceeEeccch
Q 028885 78 --CRGMILLNISL 88 (202)
Q Consensus 78 --v~~lvli~~~~ 88 (202)
++++++++|..
T Consensus 98 ~~~~~~~~~~p~~ 110 (211)
T PF07859_consen 98 PKPKGIILISPWT 110 (211)
T ss_dssp CHESEEEEESCHS
T ss_pred cchhhhhcccccc
Confidence 89999999964
No 122
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.08 E-value=8.5e-06 Score=57.53 Aligned_cols=76 Identities=16% Similarity=0.031 Sum_probs=51.8
Q ss_pred eEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh----cCCceEEEecChhhHHHHHHHHh----Cc----
Q 028885 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVM----EP---- 75 (202)
Q Consensus 8 ~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~----~p---- 75 (202)
.++.+.||+.|.-..-.. ...+.......+.++++.+ +.++++|++||||+.+.+..... .+
T Consensus 50 ~~i~FsWPS~g~~~~Y~~------d~~~a~~s~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~ 123 (233)
T PF05990_consen 50 VVILFSWPSDGSLLGYFY------DRESARFSGPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDV 123 (233)
T ss_pred eEEEEEcCCCCChhhhhh------hhhhHHHHHHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhh
Confidence 799999999886322110 1123344455555666554 46799999999999999987644 22
Q ss_pred -ccccceeEeccchh
Q 028885 76 -EICRGMILLNISLR 89 (202)
Q Consensus 76 -~~v~~lvli~~~~~ 89 (202)
.++..+|+++|-..
T Consensus 124 ~~~~~~viL~ApDid 138 (233)
T PF05990_consen 124 KARFDNVILAAPDID 138 (233)
T ss_pred HhhhheEEEECCCCC
Confidence 36889999998754
No 123
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.00 E-value=1.8e-05 Score=55.30 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHh-----cCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 36 FETWASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 36 ~~~~~~~l~~~~~~l-----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
++..++.+.++++.. ..+++++.|+|.||++++.++.++|+.+.++|.+++...
T Consensus 83 i~~s~~~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~ 141 (216)
T PF02230_consen 83 IEESAERLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLP 141 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---T
T ss_pred HHHHHHHHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccc
Confidence 334444555555542 345799999999999999999999999999999998643
No 124
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.99 E-value=3e-05 Score=60.58 Aligned_cols=81 Identities=17% Similarity=0.116 Sum_probs=59.7
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCC--HHHHHHHHHHHHHHh--cCCceEEEecChhhHHHHHHHHhCcccc
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYT--FETWASQLNDFCKDV--VKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~l--~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
.+.+|.|+..|.||.|.|+..-. ..++ .++-.+-|. .+... -..+|-.+|.|++|...+.+|+..|..+
T Consensus 77 aa~GYavV~qDvRG~~~SeG~~~------~~~~~E~~Dg~D~I~-Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaL 149 (563)
T COG2936 77 AAQGYAVVNQDVRGRGGSEGVFD------PESSREAEDGYDTIE-WLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPAL 149 (563)
T ss_pred ecCceEEEEecccccccCCcccc------eeccccccchhHHHH-HHHhCCccCCeeeeecccHHHHHHHHHHhcCCchh
Confidence 35789999999999999998653 2222 222232232 23223 2468999999999999999999998889
Q ss_pred cceeEeccchhh
Q 028885 79 RGMILLNISLRM 90 (202)
Q Consensus 79 ~~lvli~~~~~~ 90 (202)
+.++...+..+.
T Consensus 150 kai~p~~~~~D~ 161 (563)
T COG2936 150 KAIAPTEGLVDR 161 (563)
T ss_pred eeeccccccccc
Confidence 999998887663
No 125
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=97.99 E-value=2.3e-05 Score=58.29 Aligned_cols=81 Identities=15% Similarity=0.127 Sum_probs=47.6
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHH---------------HHHHHHhc------CCceEEEecCh
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQL---------------NDFCKDVV------KDQAFFICNSI 62 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l---------------~~~~~~l~------~~~~~lvG~S~ 62 (202)
..||-|+++|.+|+|+......... ...++...++..+ ...++.|. .+++.++|+||
T Consensus 158 k~GYVvla~D~~g~GER~~~e~~~~--~~~~~~~~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSm 235 (390)
T PF12715_consen 158 KRGYVVLAPDALGFGERGDMEGAAQ--GSNYDCQALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSM 235 (390)
T ss_dssp TTTSEEEEE--TTSGGG-SSCCCTT--TTS--HHHHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGG
T ss_pred hCCCEEEEEcccccccccccccccc--ccchhHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecc
Confidence 4679999999999999876442211 1222333333221 22333332 35799999999
Q ss_pred hhHHHHHHHHhCcccccceeEeccc
Q 028885 63 GGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 63 Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
||..++.+++..+ +|+..|..+-.
T Consensus 236 Gg~~a~~LaALDd-RIka~v~~~~l 259 (390)
T PF12715_consen 236 GGYRAWWLAALDD-RIKATVANGYL 259 (390)
T ss_dssp GHHHHHHHHHH-T-T--EEEEES-B
T ss_pred cHHHHHHHHHcch-hhHhHhhhhhh
Confidence 9999999999974 69888877654
No 126
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.97 E-value=2.5e-05 Score=51.55 Aligned_cols=50 Identities=12% Similarity=0.026 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHh----cCCceEEEecChhhHHHHHHHHhCcc----cccceeEeccc
Q 028885 38 TWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE----ICRGMILLNIS 87 (202)
Q Consensus 38 ~~~~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~~p~----~v~~lvli~~~ 87 (202)
.+.+.+...+++. ...+++++|||+||.+|..++....+ .+..++..+++
T Consensus 9 ~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p 66 (153)
T cd00741 9 SLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPP 66 (153)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCC
Confidence 3344444444443 56789999999999999999988765 46667777765
No 127
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=97.96 E-value=1.5e-05 Score=55.40 Aligned_cols=66 Identities=11% Similarity=-0.004 Sum_probs=36.2
Q ss_pred CCcce---EEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh
Q 028885 4 AKSHR---VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 4 ~~~~~---v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
+.+|+ |+++++-....+....... ...-+..++.+.+.+++++-+- +|.||||||||+++-.+...
T Consensus 27 ~~GY~~~~vya~tyg~~~~~~~~~~~~---~~~~~~~~l~~fI~~Vl~~TGa-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 27 AAGYCDSEVYALTYGSGNGSPSVQNAH---MSCESAKQLRAFIDAVLAYTGA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp HTT--CCCEEEE--S-CCHHTHHHHHH---B-HHHHHHHHHHHHHHHHHHT---EEEEEETCHHHHHHHHHHH
T ss_pred HcCCCcceeEeccCCCCCCCCcccccc---cchhhHHHHHHHHHHHHHhhCC-EEEEEEcCCcCHHHHHHHHH
Confidence 46787 7999985554422211000 0011224566666677777788 99999999999988887754
No 128
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.95 E-value=4.7e-05 Score=58.26 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHh-----cCCceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 39 WASQLNDFCKDV-----VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 39 ~~~~l~~~~~~l-----~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
++++|.-.+++. ..+...|+|+||||..++.++.+||+++.+++.+++..
T Consensus 269 l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 269 VQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred HHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 345555555543 22468899999999999999999999999999999874
No 129
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.94 E-value=4.3e-06 Score=61.94 Aligned_cols=80 Identities=15% Similarity=0.070 Sum_probs=49.4
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh------cCCceEEEecChhhHHHHHHHHhCcc--
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV------VKDQAFFICNSIGGLVGLQAAVMEPE-- 76 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~a~~~a~~~p~-- 76 (202)
+++.|+++||...-...... .........+.+..+++.| ..+++++||||+||.+|-..+.....
T Consensus 103 ~d~NVI~VDWs~~a~~~Y~~-------a~~n~~~vg~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ 175 (331)
T PF00151_consen 103 GDYNVIVVDWSRGASNNYPQ-------AVANTRLVGRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGG 175 (331)
T ss_dssp S-EEEEEEE-HHHHSS-HHH-------HHHHHHHHHHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT--
T ss_pred CCceEEEEcchhhccccccc-------hhhhHHHHHHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccCcc
Confidence 47999999997542211000 0112223334444444443 34689999999999999999988877
Q ss_pred cccceeEeccchhhh
Q 028885 77 ICRGMILLNISLRML 91 (202)
Q Consensus 77 ~v~~lvli~~~~~~~ 91 (202)
+|..++.++|+....
T Consensus 176 ki~rItgLDPAgP~F 190 (331)
T PF00151_consen 176 KIGRITGLDPAGPLF 190 (331)
T ss_dssp -SSEEEEES-B-TTT
T ss_pred eeeEEEecCcccccc
Confidence 899999999986644
No 130
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.93 E-value=1.4e-05 Score=53.72 Aligned_cols=72 Identities=22% Similarity=0.171 Sum_probs=54.8
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----hcCCceEEEecChhhHHHHHHHHhCcc----
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD----VVKDQAFFICNSIGGLVGLQAAVMEPE---- 76 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----l~~~~~~lvG~S~Gg~~a~~~a~~~p~---- 76 (202)
+++.|+.+|-+-+=.+. -|.++.+.|+.+++++ .+.++++|||+|+|+-+......+-|.
T Consensus 28 ~G~~VvGvdsl~Yfw~~------------rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~ 95 (192)
T PF06057_consen 28 QGVPVVGVDSLRYFWSE------------RTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALRA 95 (192)
T ss_pred CCCeEEEechHHHHhhh------------CCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHHh
Confidence 56888888877665443 3566677777776654 467899999999999888777777664
Q ss_pred cccceeEeccch
Q 028885 77 ICRGMILLNISL 88 (202)
Q Consensus 77 ~v~~lvli~~~~ 88 (202)
+|+.+++++|..
T Consensus 96 ~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 96 RVAQVVLLSPST 107 (192)
T ss_pred heeEEEEeccCC
Confidence 699999999973
No 131
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.93 E-value=2.3e-05 Score=59.65 Aligned_cols=52 Identities=17% Similarity=0.338 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHh---cCCceEEEecChhhHHHHHHHHhCcc------cccceeEeccchh
Q 028885 38 TWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPE------ICRGMILLNISLR 89 (202)
Q Consensus 38 ~~~~~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~~p~------~v~~lvli~~~~~ 89 (202)
.+...+.+.+++. ..++|+||||||||.++..+....+. .|+++|.++++..
T Consensus 101 ~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 101 EYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCC
Confidence 4444555444432 25799999999999999999988753 4999999998643
No 132
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.91 E-value=4.5e-05 Score=53.98 Aligned_cols=85 Identities=14% Similarity=0.086 Sum_probs=59.0
Q ss_pred CCcceEEEeccCCC-CCCCCCCCCC-CCC---CCCCCHHHHHHHHHHHHHHhc------CCceEEEecChhhHHHHHHHH
Q 028885 4 AKSHRVYSIDLIGY-GYSDKPNPRD-FFD---KPFYTFETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 4 ~~~~~v~~~D~~G~-G~S~~~~~~~-~~~---~~~~~~~~~~~~l~~~~~~l~------~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
..+|.|+++|+-+. |.+....... ... ....+......|+.+.++.|. .+++.++|+||||.+++.++.
T Consensus 52 ~~Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~ 131 (236)
T COG0412 52 KAGYVVLAPDLYGRQGDPTDIEDEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAAT 131 (236)
T ss_pred hCCcEEEechhhccCCCCCcccccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhc
Confidence 36799999999884 3333222100 000 012334677788888887764 356999999999999999999
Q ss_pred hCcccccceeEeccchh
Q 028885 73 MEPEICRGMILLNISLR 89 (202)
Q Consensus 73 ~~p~~v~~lvli~~~~~ 89 (202)
+.| .|++.|..-+...
T Consensus 132 ~~~-~v~a~v~fyg~~~ 147 (236)
T COG0412 132 RAP-EVKAAVAFYGGLI 147 (236)
T ss_pred ccC-CccEEEEecCCCC
Confidence 988 6888888876644
No 133
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=97.90 E-value=0.00011 Score=51.30 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhcC--CceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 39 WASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 39 ~~~~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
+++.+..+.++..+ .++.+.|+|.||+++..++..|||.+.++.+.++..
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~~ 132 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGVP 132 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeecccc
Confidence 33444444555544 479999999999999999999999999998888763
No 134
>COG0400 Predicted esterase [General function prediction only]
Probab=97.88 E-value=3.1e-05 Score=53.42 Aligned_cols=57 Identities=21% Similarity=0.255 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHhcC--CceEEEecChhhHHHHHHHHhCcccccceeEeccchhhh
Q 028885 35 TFETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRML 91 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~~ 91 (202)
..+.+++.+....++.+. ++++++|+|-||++++.....+|+.++++|+.++.....
T Consensus 79 ~~~~~~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~~ 137 (207)
T COG0400 79 ETEKLAEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPLE 137 (207)
T ss_pred HHHHHHHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCCC
Confidence 444555556666666666 689999999999999999999999999999999986544
No 135
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.87 E-value=4.5e-05 Score=56.89 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCc--ccccceeEeccc
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP--EICRGMILLNIS 87 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p--~~v~~lvli~~~ 87 (202)
...-+.+...+.+++...+.+++.++||||||.++..++..++ .+|+.++.++++
T Consensus 107 ~~~~~ql~~~V~~~l~~~ga~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 107 AVRGEQLFAYVDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred cccHHHHHHHHHHHHhhcCCCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 3456666677778888888899999999999999999999988 889999999986
No 136
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.85 E-value=4.3e-05 Score=49.53 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCc
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
+...+.+.++++..+..++++.|||+||.+|..++....
T Consensus 48 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~ 86 (140)
T PF01764_consen 48 DQILDALKELVEKYPDYSIVITGHSLGGALASLAAADLA 86 (140)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhh
Confidence 344556666666666568999999999999999888743
No 137
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.83 E-value=2.3e-05 Score=56.06 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHh-cC--CceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 39 WASQLNDFCKDV-VK--DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 39 ~~~~l~~~~~~l-~~--~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
+.++|..++++. .. ++..|+|+||||..|+.++.+||+.+.+++.++|..
T Consensus 98 l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~ 150 (251)
T PF00756_consen 98 LTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGAL 150 (251)
T ss_dssp HHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEES
T ss_pred hhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCccc
Confidence 334555555543 22 237999999999999999999999999999999863
No 138
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=3.6e-05 Score=60.43 Aligned_cols=86 Identities=17% Similarity=0.012 Sum_probs=65.9
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHhc---CCceEEEecChhhHHHHHHHHhCccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDF-FDKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
+.+|.|+.+|-||-......-.... ..-.....++.++-+.-+.++.| .+.|.+-|+|.||.+++...++||+-++
T Consensus 674 slGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~Ifr 753 (867)
T KOG2281|consen 674 SLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFR 753 (867)
T ss_pred hcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceee
Confidence 4689999999999755443211100 01245678999999998888875 4689999999999999999999999888
Q ss_pred ceeEeccchh
Q 028885 80 GMILLNISLR 89 (202)
Q Consensus 80 ~lvli~~~~~ 89 (202)
.+|.=+|...
T Consensus 754 vAIAGapVT~ 763 (867)
T KOG2281|consen 754 VAIAGAPVTD 763 (867)
T ss_pred EEeccCccee
Confidence 8887777643
No 139
>PRK04940 hypothetical protein; Provisional
Probab=97.80 E-value=8.9e-05 Score=49.67 Aligned_cols=52 Identities=10% Similarity=0.081 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHhc----CCceEEEecChhhHHHHHHHHhCcccccceeEeccchhh
Q 028885 36 FETWASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (202)
Q Consensus 36 ~~~~~~~l~~~~~~l~----~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~ 90 (202)
...-++.+.+.+..+. .+++.|||+|+||..|..++.++. -+.|++||...+
T Consensus 39 P~~a~~~l~~~i~~~~~~~~~~~~~liGSSLGGyyA~~La~~~g---~~aVLiNPAv~P 94 (180)
T PRK04940 39 PKHDMQHLLKEVDKMLQLSDDERPLICGVGLGGYWAERIGFLCG---IRQVIFNPNLFP 94 (180)
T ss_pred HHHHHHHHHHHHHHhhhccCCCCcEEEEeChHHHHHHHHHHHHC---CCEEEECCCCCh
Confidence 3333444555554321 257999999999999999999985 378999998654
No 140
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.64 E-value=0.00033 Score=48.89 Aligned_cols=53 Identities=8% Similarity=-0.012 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCc--------ccccceeEeccc
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP--------EICRGMILLNIS 87 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p--------~~v~~lvli~~~ 87 (202)
..+++..+.+.+++++.+. =.-|+|+|.||.+|..++.... ..++-+|++++.
T Consensus 84 ~~~~~sl~~l~~~i~~~GP-fdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~ 144 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENGP-FDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGF 144 (212)
T ss_dssp ---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES--
T ss_pred cCHHHHHHHHHHHHHhcCC-eEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEccc
Confidence 4456666677777776642 2449999999999999886532 247788888875
No 141
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.60 E-value=0.00016 Score=50.96 Aligned_cols=81 Identities=12% Similarity=0.007 Sum_probs=52.6
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------cCCceEEEecChhhHHHHHHHHhCc-
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVMEP- 75 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-------~~~~~~lvG~S~Gg~~a~~~a~~~p- 75 (202)
+.+|-|+++++-..-. +... .+.-+....++.+..-++++ +..++.++|||.||-.|..+|..+-
T Consensus 71 SHGfIVVAPQl~~~~~---p~~~----~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~ 143 (307)
T PF07224_consen 71 SHGFIVVAPQLYTLFP---PDGQ----DEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYAT 143 (307)
T ss_pred hcCeEEEechhhcccC---CCch----HHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccc
Confidence 4579999999875311 1110 11123333344444444443 2458999999999999999999874
Q ss_pred -ccccceeEeccchhhh
Q 028885 76 -EICRGMILLNISLRML 91 (202)
Q Consensus 76 -~~v~~lvli~~~~~~~ 91 (202)
-.+.+||-++|.....
T Consensus 144 ~lkfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 144 SLKFSALIGIDPVAGTS 160 (307)
T ss_pred cCchhheecccccCCCC
Confidence 2489999999986544
No 142
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=97.57 E-value=0.00023 Score=49.89 Aligned_cols=46 Identities=15% Similarity=0.076 Sum_probs=34.3
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHHhC----cccccceeEeccchh
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVME----PEICRGMILLNISLR 89 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~----p~~v~~lvli~~~~~ 89 (202)
+..+++..+ +++.+.|||.||.+|...++.. .++|.+++..+++..
T Consensus 75 l~~~~~~~~-~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf 124 (224)
T PF11187_consen 75 LKKIAKKYP-GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGF 124 (224)
T ss_pred HHHHHHhCC-CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCC
Confidence 333333333 4699999999999999999884 357889998887644
No 143
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.56 E-value=0.00024 Score=53.17 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=62.7
Q ss_pred ceEEEeccCCCCCCCCCCCCCCC---CCCCCCHHHHHHHHHHHHHHhcC------CceEEEecChhhHHHHHHHHhCccc
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFF---DKPFYTFETWASQLNDFCKDVVK------DQAFFICNSIGGLVGLQAAVMEPEI 77 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~l~~------~~~~lvG~S~Gg~~a~~~a~~~p~~ 77 (202)
--++-.++|=+|+|-+-..+.+. .-...|.+.-.+|.+.++.+++- .+|+.+|-|.||+++..+=.+||+.
T Consensus 112 AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHi 191 (492)
T KOG2183|consen 112 ALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHI 191 (492)
T ss_pred ceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhh
Confidence 35778899999999764433221 12345677777788888877753 3899999999999999999999999
Q ss_pred ccceeEeccchh
Q 028885 78 CRGMILLNISLR 89 (202)
Q Consensus 78 v~~lvli~~~~~ 89 (202)
|.|+...+.+..
T Consensus 192 v~GAlAaSAPvl 203 (492)
T KOG2183|consen 192 VLGALAASAPVL 203 (492)
T ss_pred hhhhhhccCceE
Confidence 999877765543
No 144
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.53 E-value=0.00019 Score=50.65 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=25.9
Q ss_pred CCceEEEecChhhHHHHHHHHhCc-----ccccceeEeccc
Q 028885 52 KDQAFFICNSIGGLVGLQAAVMEP-----EICRGMILLNIS 87 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~p-----~~v~~lvli~~~ 87 (202)
..++++.|||+||.+|..++.... ..+..++.-+|.
T Consensus 127 ~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~ 167 (229)
T cd00519 127 DYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPR 167 (229)
T ss_pred CceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 458999999999999999887643 335544444443
No 145
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.51 E-value=0.00025 Score=50.26 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHHh-------cCCceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 35 TFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l-------~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
--+.+.+.|.+.++=+ +.++-.++|||+||.+++.....+|+.+...++++|+.
T Consensus 112 g~~~f~~fL~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSl 172 (264)
T COG2819 112 GGDAFREFLTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSL 172 (264)
T ss_pred ChHHHHHHHHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchh
Confidence 3445555555444321 23468899999999999999999999999999999984
No 146
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.48 E-value=0.00031 Score=49.20 Aligned_cols=57 Identities=11% Similarity=-0.086 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHHHHHHh----cCCceEEEecChhhHHHHHHHHhCcc-----cccceeEeccchh
Q 028885 33 FYTFETWASQLNDFCKDV----VKDQAFFICNSIGGLVGLQAAVMEPE-----ICRGMILLNISLR 89 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l----~~~~~~lvG~S~Gg~~a~~~a~~~p~-----~v~~lvli~~~~~ 89 (202)
..+..++...+..++..| ++.++.+|||||||.-...|+..+.. .++++|.++..+.
T Consensus 112 ~~s~~~~s~wlk~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 112 TASGLDQSKWLKKAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred cCchhhHHHHHHHHHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 345555666666666655 57899999999999999999987633 3999999998765
No 147
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.44 E-value=0.00072 Score=50.06 Aligned_cols=77 Identities=16% Similarity=0.075 Sum_probs=55.5
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---hc--CCceEEEecChhhHHHHHHHHhCcc--
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD---VV--KDQAFFICNSIGGLVGLQAAVMEPE-- 76 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---l~--~~~~~lvG~S~Gg~~a~~~a~~~p~-- 76 (202)
..++.|+.+|+|=.-+-.. ...+++..+.+..+.++ ++ .+++.++|+|.||.+++.++..-.+
T Consensus 108 ~~g~~vv~vdYrlaPe~~~----------p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~ 177 (312)
T COG0657 108 AAGAVVVSVDYRLAPEHPF----------PAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRG 177 (312)
T ss_pred HcCCEEEecCCCCCCCCCC----------CchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcC
Confidence 4679999999996644422 33555555555555544 33 4679999999999999999987654
Q ss_pred --cccceeEeccchhh
Q 028885 77 --ICRGMILLNISLRM 90 (202)
Q Consensus 77 --~v~~lvli~~~~~~ 90 (202)
...+.+++.|....
T Consensus 178 ~~~p~~~~li~P~~d~ 193 (312)
T COG0657 178 LPLPAAQVLISPLLDL 193 (312)
T ss_pred CCCceEEEEEecccCC
Confidence 47889999997553
No 148
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00042 Score=47.10 Aligned_cols=77 Identities=21% Similarity=0.188 Sum_probs=51.8
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH----HhcC-CceEEEecChhhHHHHHHHHh-Cc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK----DVVK-DQAFFICNSIGGLVGLQAAVM-EP 75 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~l~~-~~~~lvG~S~Gg~~a~~~a~~-~p 75 (202)
++..+|+|...+ ++.+.. ..+++..+.++...++ .... +.+.+-|||.|+.+++...++ +.
T Consensus 93 a~~~gY~vasvg---Y~l~~q----------~htL~qt~~~~~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~r~ 159 (270)
T KOG4627|consen 93 AVRRGYRVASVG---YNLCPQ----------VHTLEQTMTQFTHGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQRS 159 (270)
T ss_pred hhhcCeEEEEec---cCcCcc----------cccHHHHHHHHHHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHhcC
Confidence 456778888775 454433 3355555555544443 3333 457789999999999987765 55
Q ss_pred ccccceeEeccchhhh
Q 028885 76 EICRGMILLNISLRML 91 (202)
Q Consensus 76 ~~v~~lvli~~~~~~~ 91 (202)
.+|.++++.++.....
T Consensus 160 prI~gl~l~~GvY~l~ 175 (270)
T KOG4627|consen 160 PRIWGLILLCGVYDLR 175 (270)
T ss_pred chHHHHHHHhhHhhHH
Confidence 5899999999976543
No 149
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=97.41 E-value=0.0012 Score=43.19 Aligned_cols=81 Identities=12% Similarity=0.089 Sum_probs=57.7
Q ss_pred CcceEEEeccCCC-----CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccccc
Q 028885 5 KSHRVYSIDLIGY-----GYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 5 ~~~~v~~~D~~G~-----G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
.++.|..++.+-. |...+++. ...-...+...+.++...+...+.++-|+||||-++...+..---.|+
T Consensus 42 ~G~~vaRfefpYma~Rrtg~rkPp~~------~~t~~~~~~~~~aql~~~l~~gpLi~GGkSmGGR~aSmvade~~A~i~ 115 (213)
T COG3571 42 RGWLVARFEFPYMAARRTGRRKPPPG------SGTLNPEYIVAIAQLRAGLAEGPLIIGGKSMGGRVASMVADELQAPID 115 (213)
T ss_pred CceeEEEeecchhhhccccCCCCcCc------cccCCHHHHHHHHHHHhcccCCceeeccccccchHHHHHHHhhcCCcc
Confidence 4577777776543 32222222 223345677788888888887899999999999999998876555599
Q ss_pred ceeEeccchhhh
Q 028885 80 GMILLNISLRML 91 (202)
Q Consensus 80 ~lvli~~~~~~~ 91 (202)
++++++-++.++
T Consensus 116 ~L~clgYPfhpp 127 (213)
T COG3571 116 GLVCLGYPFHPP 127 (213)
T ss_pred eEEEecCccCCC
Confidence 999998765543
No 150
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.36 E-value=0.00028 Score=53.69 Aligned_cols=53 Identities=13% Similarity=0.158 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc--------cccceeEeccc
Q 028885 35 TFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--------ICRGMILLNIS 87 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~--------~v~~lvli~~~ 87 (202)
.+..+..-++.+.+.-|.+|++||+||||+.+.+.+...+++ .+++.|-++.+
T Consensus 164 yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~~~~~~~W~~k~I~sfvnig~p 224 (473)
T KOG2369|consen 164 YLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWVEAEGPAWCDKYIKSFVNIGAP 224 (473)
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhcccccchhHHHHHHHHHHccCch
Confidence 444555555555555566999999999999999999999887 37788877765
No 151
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.0014 Score=46.00 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=62.5
Q ss_pred CcceEEEeccCCCCCCC---CCCCCCCCCCCCCCHHHHHHHHHHHHHHhc--CCceEEEecChhhHHHHHHHHhC-c-cc
Q 028885 5 KSHRVYSIDLIGYGYSD---KPNPRDFFDKPFYTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVME-P-EI 77 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~--~~~~~lvG~S~Gg~~a~~~a~~~-p-~~ 77 (202)
+..+++.+-..||-.-. ....+.. ....++++++++.-.+|++..- ..+++++|||-|+.+.+.+.-.. + -.
T Consensus 58 ~r~~~wtIsh~~H~~~P~sl~~~~s~~-~~eifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~ 136 (301)
T KOG3975|consen 58 DRLPVWTISHAGHALMPASLREDHSHT-NEEIFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFS 136 (301)
T ss_pred cccceeEEeccccccCCcccccccccc-cccccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhhcccccc
Confidence 34568888888885544 1111111 1367899999999999998864 45899999999999999988642 2 25
Q ss_pred ccceeEeccchhhhh
Q 028885 78 CRGMILLNISLRMLH 92 (202)
Q Consensus 78 v~~lvli~~~~~~~~ 92 (202)
|.+++++=|..-...
T Consensus 137 vqKa~~LFPTIerM~ 151 (301)
T KOG3975|consen 137 VQKAVLLFPTIERMH 151 (301)
T ss_pred eEEEEEecchHHHHh
Confidence 888998888765443
No 152
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.32 E-value=0.00061 Score=46.89 Aligned_cols=78 Identities=12% Similarity=-0.004 Sum_probs=57.1
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC----CceEEEecChhhHHHHHHHHh--Cccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK----DQAFFICNSIGGLVGLQAAVM--EPEI 77 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~----~~~~lvG~S~Gg~~a~~~a~~--~p~~ 77 (202)
..+|.++-+.++.+- .. ..-.++.+=++|+..++++++. ++++|+|||.|+.-.+.|..+ .|..
T Consensus 64 e~~wslVq~q~~Ssy-----~G-----~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYlTnt~~~r~ 133 (299)
T KOG4840|consen 64 ENSWSLVQPQLRSSY-----NG-----YGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYLTNTTKDRK 133 (299)
T ss_pred hccceeeeeeccccc-----cc-----cccccccccHHHHHHHHHHhhccCcccceEEEecCccchHHHHHHHhccchHH
Confidence 345666666655331 10 2345677778899999998864 379999999999998888854 4678
Q ss_pred ccceeEeccchhhh
Q 028885 78 CRGMILLNISLRML 91 (202)
Q Consensus 78 v~~lvli~~~~~~~ 91 (202)
++..|+.+|....+
T Consensus 134 iraaIlqApVSDrE 147 (299)
T KOG4840|consen 134 IRAAILQAPVSDRE 147 (299)
T ss_pred HHHHHHhCccchhh
Confidence 99999999987754
No 153
>PLN02162 triacylglycerol lipase
Probab=97.29 E-value=0.00072 Score=51.79 Aligned_cols=35 Identities=17% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHH
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
.+.+.+.+.+++....++++.|||+||.+|..+|+
T Consensus 263 ~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 263 TIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 34455555665655668999999999999999765
No 154
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=97.29 E-value=0.00092 Score=49.40 Aligned_cols=84 Identities=15% Similarity=0.047 Sum_probs=55.2
Q ss_pred CCcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHH-------HH---HHHHHHHhcCCceEEEecChhhHHHHHH
Q 028885 1 MVLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWA-------SQ---LNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (202)
Q Consensus 1 ~~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~-------~~---l~~~~~~l~~~~~~lvG~S~Gg~~a~~~ 70 (202)
|.|.++...+.+..|=||.-.+...... ...+..++. .+ +...+++-|..++-+.|.||||.+|...
T Consensus 116 pLl~~gi~s~~le~Pyyg~RkP~~Q~~s---~l~~VsDl~~~g~~~i~E~~~Ll~Wl~~~G~~~~g~~G~SmGG~~A~la 192 (348)
T PF09752_consen 116 PLLKEGIASLILENPYYGQRKPKDQRRS---SLRNVSDLFVMGRATILESRALLHWLEREGYGPLGLTGISMGGHMAALA 192 (348)
T ss_pred HHHHcCcceEEEecccccccChhHhhcc---cccchhHHHHHHhHHHHHHHHHHHHHHhcCCCceEEEEechhHhhHHhh
Confidence 3466788888888888887655432111 112222222 11 2233334477899999999999999999
Q ss_pred HHhCcccccceeEeccc
Q 028885 71 AVMEPEICRGMILLNIS 87 (202)
Q Consensus 71 a~~~p~~v~~lvli~~~ 87 (202)
|+.+|..|.-+-.+++.
T Consensus 193 a~~~p~pv~~vp~ls~~ 209 (348)
T PF09752_consen 193 ASNWPRPVALVPCLSWS 209 (348)
T ss_pred hhcCCCceeEEEeeccc
Confidence 99999987766666654
No 155
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.23 E-value=0.00041 Score=48.57 Aligned_cols=36 Identities=31% Similarity=0.380 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhcC--CceEEEecChhhHHHHHHHH
Q 028885 37 ETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~ 72 (202)
+.+++.+.+.++.... .++++|||||||.++-.+..
T Consensus 60 ~rL~~eI~~~~~~~~~~~~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 60 ERLAEEILEHIKDYESKIRKISFIGHSLGGLIARYALG 97 (217)
T ss_pred HHHHHHHHHhccccccccccceEEEecccHHHHHHHHH
Confidence 3444455555544443 48999999999999865544
No 156
>PLN02571 triacylglycerol lipase
Probab=97.21 E-value=0.00068 Score=51.41 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhcCC--ceEEEecChhhHHHHHHHHh
Q 028885 37 ETWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~ 73 (202)
+.+.+++.++++....+ ++++.||||||.+|+..|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 45556667777665543 68999999999999998875
No 157
>PLN02454 triacylglycerol lipase
Probab=97.18 E-value=0.00087 Score=50.81 Aligned_cols=32 Identities=13% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCc--eEEEecChhhHHHHHHHHh
Q 028885 42 QLNDFCKDVVKDQ--AFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 42 ~l~~~~~~l~~~~--~~lvG~S~Gg~~a~~~a~~ 73 (202)
.+.++++.....+ +++.|||+||.+|+..|..
T Consensus 215 ~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 215 KIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 3444444443333 9999999999999999865
No 158
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=97.18 E-value=0.0019 Score=49.72 Aligned_cols=84 Identities=20% Similarity=0.205 Sum_probs=59.2
Q ss_pred cCCcceEEEeccC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------cCCceEEEecChhhHHHHHHHHh-
Q 028885 3 LAKSHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVM- 73 (202)
Q Consensus 3 L~~~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-------~~~~~~lvG~S~Gg~~a~~~a~~- 73 (202)
+.+...|+-+|+| |.|.|....... ...+.+..++++.++++.. ...+++|.|.|.||..+..+|..
T Consensus 82 W~~~an~l~iD~PvGtGfS~~~~~~~----~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i 157 (415)
T PF00450_consen 82 WNKFANLLFIDQPVGTGFSYGNDPSD----YVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYI 157 (415)
T ss_dssp GGGTSEEEEE--STTSTT-EESSGGG----GS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHH
T ss_pred cccccceEEEeecCceEEeecccccc----ccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhh
Confidence 3456899999955 999999876421 2457888888888888764 34589999999999887776643
Q ss_pred ---C------cccccceeEeccchhh
Q 028885 74 ---E------PEICRGMILLNISLRM 90 (202)
Q Consensus 74 ---~------p~~v~~lvli~~~~~~ 90 (202)
. +-.++|+++.++...+
T Consensus 158 ~~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 158 LQQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHHTCC--STTSEEEEEEEESE-SBH
T ss_pred hhccccccccccccccceecCccccc
Confidence 2 2358999999987654
No 159
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.17 E-value=0.0035 Score=45.20 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHHHhcCC--ceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 35 TFETWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
....+++.+..++.+.+++ .|++.|.|-||.++.++++.+|+.+.++.+++...
T Consensus 124 dVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 124 DVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred HHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 4555666666666777766 79999999999999999999999999999888764
No 160
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.16 E-value=0.0012 Score=44.81 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh------CcccccceeEeccchh
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM------EPEICRGMILLNISLR 89 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~------~p~~v~~lvli~~~~~ 89 (202)
....+.+........+++|+|+|.|+.++..++.. ..++|.++|+++-+..
T Consensus 67 ~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~ 123 (179)
T PF01083_consen 67 LVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRR 123 (179)
T ss_dssp HHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTT
T ss_pred HHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcc
Confidence 33344444445556789999999999999999877 3467999999987644
No 161
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.16 E-value=0.0016 Score=48.24 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=50.4
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh--------Ccccc
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM--------EPEIC 78 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~--------~p~~v 78 (202)
...+.+-||..|.--.-.-+ .....++...+...+..+.+....++++|++||||..+.+....+ -+.++
T Consensus 147 ~~pVvFSWPS~g~l~~Yn~D--reS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki 224 (377)
T COG4782 147 GVPVVFSWPSRGSLLGYNYD--RESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKI 224 (377)
T ss_pred cceEEEEcCCCCeeeecccc--hhhhhhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcchhhhh
Confidence 45667777776653221100 001234444444444444445556789999999999999886643 24468
Q ss_pred cceeEeccchh
Q 028885 79 RGMILLNISLR 89 (202)
Q Consensus 79 ~~lvli~~~~~ 89 (202)
+-+|+-+|-..
T Consensus 225 ~nViLAaPDiD 235 (377)
T COG4782 225 KNVILAAPDID 235 (377)
T ss_pred hheEeeCCCCC
Confidence 89999998754
No 162
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=97.12 E-value=0.0027 Score=44.58 Aligned_cols=77 Identities=14% Similarity=0.016 Sum_probs=43.5
Q ss_pred CCcceEEEeccCCC-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---cCCceEEEecChhhHHHHHHHHhCccccc
Q 028885 4 AKSHRVYSIDLIGY-GYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 4 ~~~~~v~~~D~~G~-G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
+.||+|+.||.--| |.|+... ..+++....+++..+++.+ |.+.+-||.-|+.|-+|.+.|.+- .+.
T Consensus 55 ~NGFhViRyDsl~HvGlSsG~I-------~eftms~g~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i--~ls 125 (294)
T PF02273_consen 55 ANGFHVIRYDSLNHVGLSSGDI-------NEFTMSIGKASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI--NLS 125 (294)
T ss_dssp TTT--EEEE---B--------------------HHHHHHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS----S
T ss_pred hCCeEEEeccccccccCCCCCh-------hhcchHHhHHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc--Ccc
Confidence 46799999999998 9999876 4789999999988877765 567899999999999999999853 377
Q ss_pred ceeEeccchh
Q 028885 80 GMILLNISLR 89 (202)
Q Consensus 80 ~lvli~~~~~ 89 (202)
-+|..-+...
T Consensus 126 fLitaVGVVn 135 (294)
T PF02273_consen 126 FLITAVGVVN 135 (294)
T ss_dssp EEEEES--S-
T ss_pred eEEEEeeeee
Confidence 7777766543
No 163
>COG0627 Predicted esterase [General function prediction only]
Probab=97.11 E-value=0.00063 Score=50.13 Aligned_cols=58 Identities=21% Similarity=0.291 Sum_probs=44.1
Q ss_pred CCHHHHH-HHHHHHHHHhcC-----CceEEEecChhhHHHHHHHHhCcccccceeEeccchhhh
Q 028885 34 YTFETWA-SQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRML 91 (202)
Q Consensus 34 ~~~~~~~-~~l~~~~~~l~~-----~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~~ 91 (202)
+.+++++ +.+-+.+++... +.-.++||||||.=|+.+|+.||++++.+...++.....
T Consensus 127 ~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s 190 (316)
T COG0627 127 YQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPS 190 (316)
T ss_pred cchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccc
Confidence 5666655 445544443322 268899999999999999999999999999999876543
No 164
>PLN00413 triacylglycerol lipase
Probab=97.10 E-value=0.0017 Score=50.01 Aligned_cols=35 Identities=14% Similarity=0.237 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHH
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
...+.+.++++.....++++.|||+||.+|...|.
T Consensus 269 ~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 269 TILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 45566777777776678999999999999999885
No 165
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.07 E-value=0.0012 Score=52.19 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=30.2
Q ss_pred cCCceEEEecChhhHHHHHHHHhC-----------c----ccccceeEeccch
Q 028885 51 VKDQAFFICNSIGGLVGLQAAVME-----------P----EICRGMILLNISL 88 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~~a~~~-----------p----~~v~~lvli~~~~ 88 (202)
+.++|+||||||||.+++.+...- + +.|++.|.|+++.
T Consensus 211 ggkKVVLV~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp~ 263 (642)
T PLN02517 211 GGKKVVVVPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGPF 263 (642)
T ss_pred CCCeEEEEEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheeccccc
Confidence 457999999999999999977532 1 2489999999863
No 166
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.07 E-value=0.002 Score=43.32 Aligned_cols=54 Identities=17% Similarity=0.051 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHhc-----CCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 36 FETWASQLNDFCKDVV-----KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 36 ~~~~~~~l~~~~~~l~-----~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
-+.-+.+|.+|++.|. ...+.++|||+|+.++-..+...+..++.+|+++++..
T Consensus 87 A~~ga~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddvv~~GSPG~ 145 (177)
T PF06259_consen 87 ARAGAPRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDVVLVGSPGM 145 (177)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccEEEECCCCC
Confidence 3555567777777663 23689999999999999998887778999999987643
No 167
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.05 E-value=0.00023 Score=54.00 Aligned_cols=37 Identities=24% Similarity=0.196 Sum_probs=26.9
Q ss_pred CceEEEecChhhHHHHHHHHhCcccccceeEeccchhh
Q 028885 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~ 90 (202)
.++.++|||+||..++..+.+. .+++..|++++...+
T Consensus 228 ~~i~~~GHSFGGATa~~~l~~d-~r~~~~I~LD~W~~P 264 (379)
T PF03403_consen 228 SRIGLAGHSFGGATALQALRQD-TRFKAGILLDPWMFP 264 (379)
T ss_dssp EEEEEEEETHHHHHHHHHHHH--TT--EEEEES---TT
T ss_pred hheeeeecCchHHHHHHHHhhc-cCcceEEEeCCcccC
Confidence 4689999999999999888776 679999999997543
No 168
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.03 E-value=0.0018 Score=44.52 Aligned_cols=41 Identities=10% Similarity=0.094 Sum_probs=32.2
Q ss_pred CCHHHHHHHHHHHHHHhc-CCceEEEecChhhHHHHHHHHhC
Q 028885 34 YTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
.-..+..+....++++.+ .++++|+|||.|+.+..++..++
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 345566666667777774 46999999999999999998875
No 169
>PLN02408 phospholipase A1
Probab=97.00 E-value=0.0015 Score=48.85 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCC--ceEEEecChhhHHHHHHHHhC
Q 028885 38 TWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
...+.+.++++..+.+ ++++.|||+||.+|...|..-
T Consensus 183 qVl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl 221 (365)
T PLN02408 183 MVREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDI 221 (365)
T ss_pred HHHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHH
Confidence 3445566666665543 589999999999999988764
No 170
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=96.98 E-value=0.0071 Score=45.08 Aligned_cols=75 Identities=19% Similarity=0.132 Sum_probs=53.5
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH------hcCCceEEEecChhhHHHHHHHHhC-----
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD------VVKDQAFFICNSIGGLVGLQAAVME----- 74 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------l~~~~~~lvG~S~Gg~~a~~~a~~~----- 74 (202)
+.-|+++|+|=--+...| ...++-.+.+..++++ .+.++++|+|-|.||.+|..+|.+.
T Consensus 123 ~~vvvSVdYRLAPEh~~P----------a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~ 192 (336)
T KOG1515|consen 123 NCVVVSVDYRLAPEHPFP----------AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKL 192 (336)
T ss_pred CeEEEecCcccCCCCCCC----------ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccC
Confidence 467888888855444333 3556666666666654 2346799999999999999988653
Q ss_pred -cccccceeEeccchhh
Q 028885 75 -PEICRGMILLNISLRM 90 (202)
Q Consensus 75 -p~~v~~lvli~~~~~~ 90 (202)
+-++++.|++-|....
T Consensus 193 ~~~ki~g~ili~P~~~~ 209 (336)
T KOG1515|consen 193 SKPKIKGQILIYPFFQG 209 (336)
T ss_pred CCcceEEEEEEecccCC
Confidence 3579999999998553
No 171
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0028 Score=52.47 Aligned_cols=86 Identities=12% Similarity=-0.031 Sum_probs=62.9
Q ss_pred CCcceEEEeccCCCCCCCCCCC-CCCCCCCCCCHHHHHHHHHHHHHHhcC--CceEEEecChhhHHHHHHHHhCcccc-c
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNP-RDFFDKPFYTFETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEPEIC-R 79 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~~~p~~v-~ 79 (202)
..++.|+.+|.||-|....... ...........++....+..+++..-+ +++.+.|+|.||.+++..+..+|+.+ +
T Consensus 556 ~~g~~v~~vd~RGs~~~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fk 635 (755)
T KOG2100|consen 556 SRGFAVLQVDGRGSGGYGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFK 635 (755)
T ss_pred cCCeEEEEEcCCCcCCcchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEE
Confidence 4578999999999977654321 011112446777777777777776533 57999999999999999999998554 4
Q ss_pred ceeEeccchh
Q 028885 80 GMILLNISLR 89 (202)
Q Consensus 80 ~lvli~~~~~ 89 (202)
..|.++|+..
T Consensus 636 cgvavaPVtd 645 (755)
T KOG2100|consen 636 CGVAVAPVTD 645 (755)
T ss_pred EEEEecceee
Confidence 5599999855
No 172
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.95 E-value=0.0037 Score=48.17 Aligned_cols=84 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcC-------CceEEEecChhhHHHHHHHHhCcccc
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVK-------DQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-------~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
+-.|+.+++|=+|.|.+........-...+.+....|++.++++++. .|.+.+|-|.-|.++..+=..|||.+
T Consensus 118 gA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~ 197 (514)
T KOG2182|consen 118 GATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELT 197 (514)
T ss_pred CCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhh
Confidence 35799999999999976543322223456778888899999988752 28999999999999999999999999
Q ss_pred cceeEeccchh
Q 028885 79 RGMILLNISLR 89 (202)
Q Consensus 79 ~~lvli~~~~~ 89 (202)
.|.|..+.+..
T Consensus 198 ~GsvASSapv~ 208 (514)
T KOG2182|consen 198 VGSVASSAPVL 208 (514)
T ss_pred eeeccccccee
Confidence 99999887754
No 173
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.0037 Score=50.79 Aligned_cols=55 Identities=16% Similarity=0.196 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHh----c---------CCceEEEecChhhHHHHHHHHhC---cccccceeEeccc
Q 028885 33 FYTFETWASQLNDFCKDV----V---------KDQAFFICNSIGGLVGLQAAVME---PEICRGMILLNIS 87 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l----~---------~~~~~lvG~S~Gg~~a~~~a~~~---p~~v~~lvli~~~ 87 (202)
..++.++++.+.+.++.+ . ...|++|||||||.+|...+..- +..|.-++-.+++
T Consensus 149 G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tlkn~~~~sVntIITlssP 219 (973)
T KOG3724|consen 149 GHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTLKNEVQGSVNTIITLSSP 219 (973)
T ss_pred cHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhhhhhccchhhhhhhhcCc
Confidence 346666666666555432 1 12499999999999998877542 3345555555543
No 174
>COG4099 Predicted peptidase [General function prediction only]
Probab=96.88 E-value=0.0023 Score=46.14 Aligned_cols=52 Identities=13% Similarity=0.077 Sum_probs=40.4
Q ss_pred HHHHHHHH-HHHHhcCC--ceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 38 TWASQLND-FCKDVVKD--QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 38 ~~~~~l~~-~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
...+.+.+ +.++.+++ .+.++|.|+||+-++.++.++|+.+.+.++|++...
T Consensus 251 ~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 251 EKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred HHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 33444442 33444443 699999999999999999999999999999998755
No 175
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=96.87 E-value=0.0023 Score=47.68 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=31.8
Q ss_pred hcCCceEEEecChhhHHHHHHHHhCccc-----ccceeEeccchh
Q 028885 50 VVKDQAFFICNSIGGLVGLQAAVMEPEI-----CRGMILLNISLR 89 (202)
Q Consensus 50 l~~~~~~lvG~S~Gg~~a~~~a~~~p~~-----v~~lvli~~~~~ 89 (202)
.+.+|+.|||||+|+.+.......-.++ |+.+++++.+..
T Consensus 217 ~G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gapv~ 261 (345)
T PF05277_consen 217 QGERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAPVP 261 (345)
T ss_pred CCCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCCCC
Confidence 3678999999999999988866554443 899999988644
No 176
>PLN02934 triacylglycerol lipase
Probab=96.86 E-value=0.0022 Score=49.73 Aligned_cols=35 Identities=17% Similarity=0.250 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHH
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
.....+.+++++....++++.|||+||.+|..++.
T Consensus 306 ~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 306 AVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 45566677777766678999999999999999875
No 177
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=96.83 E-value=0.0039 Score=49.29 Aligned_cols=78 Identities=15% Similarity=0.011 Sum_probs=50.8
Q ss_pred ceEEEeccC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH---HhcC--CceEEEecChhhHHHHHHHHh--Cc
Q 028885 7 HRVYSIDLI----GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCK---DVVK--DQAFFICNSIGGLVGLQAAVM--EP 75 (202)
Q Consensus 7 ~~v~~~D~~----G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~l~~--~~~~lvG~S~Gg~~a~~~a~~--~p 75 (202)
+-|+.+++| |+..+..... ...+-+.+....+.-+.+ ..+. ++|+|+|+|.||..+..++.. .+
T Consensus 126 ~~vv~~~yRlg~~g~~~~~~~~~-----~~n~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~ 200 (493)
T cd00312 126 VIVVSINYRLGVLGFLSTGDIEL-----PGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSK 200 (493)
T ss_pred EEEEEecccccccccccCCCCCC-----CcchhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchh
Confidence 788999998 3332222110 123445555555544443 4443 579999999999998887776 34
Q ss_pred ccccceeEeccchh
Q 028885 76 EICRGMILLNISLR 89 (202)
Q Consensus 76 ~~v~~lvli~~~~~ 89 (202)
..++++|++++...
T Consensus 201 ~lf~~~i~~sg~~~ 214 (493)
T cd00312 201 GLFHRAISQSGSAL 214 (493)
T ss_pred HHHHHHhhhcCCcc
Confidence 57999999987644
No 178
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=96.78 E-value=0.0048 Score=45.63 Aligned_cols=44 Identities=14% Similarity=0.197 Sum_probs=35.6
Q ss_pred HHHHHhcCCceEEEecChhhHHHHHHHHhCcc-cccceeEeccch
Q 028885 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE-ICRGMILLNISL 88 (202)
Q Consensus 45 ~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~-~v~~lvli~~~~ 88 (202)
+++++.+...++||||+.|+..++++....+. .++++|+|++-.
T Consensus 185 ~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~~~daLV~I~a~~ 229 (310)
T PF12048_consen 185 AFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPPMPDALVLINAYW 229 (310)
T ss_pred HHHHhcCCceEEEEEeChhHHHHHHHHhcCCCcccCeEEEEeCCC
Confidence 33444455669999999999999999988765 499999999963
No 179
>PLN02324 triacylglycerol lipase
Probab=96.76 E-value=0.0031 Score=47.91 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhcCC--ceEEEecChhhHHHHHHHHh
Q 028885 39 WASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~ 73 (202)
+.+.+..+++..... ++++.|||+||.+|+..|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 444555666655432 59999999999999998864
No 180
>COG3150 Predicted esterase [General function prediction only]
Probab=96.72 E-value=0.0053 Score=40.48 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.......++.++.++.+++.+...|||.|+||..|.+++.++- ++ .|++||...
T Consensus 39 ~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~G--ir-av~~NPav~ 92 (191)
T COG3150 39 PHDPQQALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCG--IR-AVVFNPAVR 92 (191)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhC--Ch-hhhcCCCcC
Confidence 3577888899999999999888999999999999999999974 43 466788754
No 181
>PLN02310 triacylglycerol lipase
Probab=96.66 E-value=0.0038 Score=47.37 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhc----CCceEEEecChhhHHHHHHHHh
Q 028885 37 ETWASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~----~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
+...+.+.++++... ..++++.|||+||.+|+..|..
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 344455666665553 1369999999999999998854
No 182
>PLN02802 triacylglycerol lipase
Probab=96.63 E-value=0.004 Score=48.39 Aligned_cols=36 Identities=11% Similarity=0.088 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhcCC--ceEEEecChhhHHHHHHHHhC
Q 028885 39 WASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
..+.+.++++....+ ++++.|||+||.+|...|...
T Consensus 314 Vl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 314 VVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred HHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHH
Confidence 344555555555432 689999999999999988653
No 183
>PLN02753 triacylglycerol lipase
Probab=96.53 E-value=0.005 Score=48.04 Aligned_cols=36 Identities=11% Similarity=0.145 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhcC-----CceEEEecChhhHHHHHHHHh
Q 028885 38 TWASQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~-----~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
...+.+..+++..+. .++++.|||+||.+|...|..
T Consensus 292 QVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 292 QILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 334455555555432 479999999999999998864
No 184
>PLN03037 lipase class 3 family protein; Provisional
Probab=96.49 E-value=0.0054 Score=47.79 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhc----CCceEEEecChhhHHHHHHHHh
Q 028885 38 TWASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 38 ~~~~~l~~~~~~l~----~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
...+++.++++.+. ..++++.|||+||.+|+..|..
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 34456666666553 2369999999999999998854
No 185
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=96.48 E-value=0.016 Score=43.23 Aligned_cols=78 Identities=15% Similarity=0.166 Sum_probs=50.4
Q ss_pred ceEEEeccC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----h---cCCceEEEecChhhHHHHHHHHh----C
Q 028885 7 HRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD----V---VKDQAFFICNSIGGLVGLQAAVM----E 74 (202)
Q Consensus 7 ~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----l---~~~~~~lvG~S~Gg~~a~~~a~~----~ 74 (202)
..|+-+|.| |-|.|....+. ...+-+..++|+..+++. . ...+++|.|.|.||..+-.+|.. .
T Consensus 2 aNvLfiDqPvGvGfSy~~~~~-----~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~I~~~n 76 (319)
T PLN02213 2 ANIIFLDQPVGSGFSYSKTPI-----DKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGN 76 (319)
T ss_pred ccEEEecCCCCCCCCCCCCCC-----CccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHHHHhhc
Confidence 368899998 99999764421 111222333555555444 2 35689999999999877776653 1
Q ss_pred ------cccccceeEeccchh
Q 028885 75 ------PEICRGMILLNISLR 89 (202)
Q Consensus 75 ------p~~v~~lvli~~~~~ 89 (202)
+=.++|+++-++...
T Consensus 77 ~~~~~~~inLkGi~IGNg~t~ 97 (319)
T PLN02213 77 YICCEPPINLQGYMLGNPVTY 97 (319)
T ss_pred ccccCCceeeeEEEeCCCCCC
Confidence 125888888887644
No 186
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=96.48 E-value=0.0021 Score=46.42 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=33.1
Q ss_pred ceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.=+|+|.|+||.+++..+.+||+++-.++..+|...
T Consensus 178 ~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~ 213 (299)
T COG2382 178 GRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFW 213 (299)
T ss_pred CcEEeccccccHHHHHHHhcCchhhceeeccCCccc
Confidence 468999999999999999999999999999999754
No 187
>PLN02719 triacylglycerol lipase
Probab=96.39 E-value=0.0069 Score=47.17 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHhcC-----CceEEEecChhhHHHHHHHHh
Q 028885 39 WASQLNDFCKDVVK-----DQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 39 ~~~~l~~~~~~l~~-----~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
+...+.++++.... .++++.|||+||.+|...|..
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHH
Confidence 33445555554432 379999999999999998864
No 188
>PLN02761 lipase class 3 family protein
Probab=96.32 E-value=0.0079 Score=46.96 Aligned_cols=37 Identities=14% Similarity=0.078 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhc------CCceEEEecChhhHHHHHHHHh
Q 028885 37 ETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~------~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
+.+.+.+..+++... .-++++.|||+||.+|...|..
T Consensus 272 ~qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 272 EQVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 344455566665552 1269999999999999998853
No 189
>KOG3101 consensus Esterase D [General function prediction only]
Probab=96.32 E-value=0.00019 Score=48.93 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=34.5
Q ss_pred CCceEEEecChhhHHHHHHHHhCcccccceeEeccchhhh
Q 028885 52 KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRML 91 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~~ 91 (202)
..++-|.||||||.=|+..+.+.|.+.+++-..+|...+.
T Consensus 140 ~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 140 PLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred chhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 3478999999999999999999999999988888876544
No 190
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=96.14 E-value=0.0025 Score=46.29 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=29.7
Q ss_pred CceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.++.++|||+||..+....+.+.+ ++..|+.+..-.
T Consensus 241 s~~aViGHSFGgAT~i~~ss~~t~-FrcaI~lD~WM~ 276 (399)
T KOG3847|consen 241 SQAAVIGHSFGGATSIASSSSHTD-FRCAIALDAWMF 276 (399)
T ss_pred hhhhheeccccchhhhhhhccccc-eeeeeeeeeeec
Confidence 368999999999999888887765 899998887533
No 191
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=96.13 E-value=0.011 Score=44.23 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
..+.+++..+++....-++.+.|||+||.+|...|..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 5666777777777777789999999999999998865
No 192
>PLN02847 triacylglycerol lipase
Probab=96.12 E-value=0.012 Score=46.63 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=19.1
Q ss_pred CCceEEEecChhhHHHHHHHHh
Q 028885 52 KDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
.-+++++|||+||.+|..++..
T Consensus 250 dYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 250 DFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCeEEEeccChHHHHHHHHHHH
Confidence 3479999999999999998765
No 193
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.04 E-value=0.013 Score=46.28 Aligned_cols=36 Identities=28% Similarity=0.568 Sum_probs=26.8
Q ss_pred CCceEEEecChhhHHHHHHHHhC-----cc------cccceeEeccc
Q 028885 52 KDQAFFICNSIGGLVGLQAAVME-----PE------ICRGMILLNIS 87 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~-----p~------~v~~lvli~~~ 87 (202)
.++++.|||||||.++=.+.... |+ ..+|+|+++.+
T Consensus 525 ~RPivwI~HSmGGLl~K~lLlda~~S~kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 525 DRPIVWIGHSMGGLLAKKLLLDAYCSSKPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred CCceEEEecccchHHHHHHHHHHhhcCCchhhhhhccCCceEEEecC
Confidence 46899999999998887766542 32 36777777765
No 194
>PLN02633 palmitoyl protein thioesterase family protein
Probab=96.03 E-value=0.034 Score=40.70 Aligned_cols=56 Identities=14% Similarity=-0.016 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHHhc--CCceEEEecChhhHHHHHHHHhCcc--cccceeEeccc
Q 028885 32 PFYTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE--ICRGMILLNIS 87 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~--~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvli~~~ 87 (202)
......++++.+.+.+.... .+-+++||+|-||.++-.++.+.|+ .|+.+|.++++
T Consensus 71 ~~~~~~~Qve~vce~l~~~~~l~~G~naIGfSQGGlflRa~ierc~~~p~V~nlISlggp 130 (314)
T PLN02633 71 WLMPLTQQAEIACEKVKQMKELSQGYNIVGRSQGNLVARGLIEFCDGGPPVYNYISLAGP 130 (314)
T ss_pred ceeCHHHHHHHHHHHHhhchhhhCcEEEEEEccchHHHHHHHHHCCCCCCcceEEEecCC
Confidence 34566666666666555422 2469999999999999999999987 59999999876
No 195
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=96.01 E-value=0.039 Score=41.67 Aligned_cols=80 Identities=11% Similarity=0.151 Sum_probs=55.4
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh--Cc---ccccc
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM--EP---EICRG 80 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~--~p---~~v~~ 80 (202)
+..++.+|+.-...-.... .....+.+.++....+++..|.+.++|+|-|.||.+++.+... ++ ..-++
T Consensus 154 ~~SILvLDYsLt~~~~~~~------~yPtQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~ 227 (374)
T PF10340_consen 154 EVSILVLDYSLTSSDEHGH------KYPTQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKS 227 (374)
T ss_pred CCeEEEEeccccccccCCC------cCchHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCce
Confidence 3366777766443111111 2446777778888888877888999999999999999987643 21 13689
Q ss_pred eeEeccchhhh
Q 028885 81 MILLNISLRML 91 (202)
Q Consensus 81 lvli~~~~~~~ 91 (202)
+|+|+|.....
T Consensus 228 ~iLISPWv~l~ 238 (374)
T PF10340_consen 228 AILISPWVNLV 238 (374)
T ss_pred eEEECCCcCCc
Confidence 99999986654
No 196
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=95.87 E-value=0.047 Score=37.94 Aligned_cols=38 Identities=11% Similarity=-0.020 Sum_probs=30.9
Q ss_pred cCCceEEEecChhhHHHHHHHHhCcccccceeEeccchhh
Q 028885 51 VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRM 90 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~ 90 (202)
+.+.+.|||+|||-.+|.++.... .++..|.|++...+
T Consensus 55 ~y~~i~lvAWSmGVw~A~~~l~~~--~~~~aiAINGT~~P 92 (213)
T PF04301_consen 55 GYREIYLVAWSMGVWAANRVLQGI--PFKRAIAINGTPYP 92 (213)
T ss_pred cCceEEEEEEeHHHHHHHHHhccC--CcceeEEEECCCCC
Confidence 467999999999999999887654 37888889887554
No 197
>PLN02209 serine carboxypeptidase
Probab=95.79 E-value=0.038 Score=42.97 Aligned_cols=81 Identities=16% Similarity=0.248 Sum_probs=52.3
Q ss_pred CCcceEEEec-cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------cCCceEEEecChhhHHHHHHHHh--
Q 028885 4 AKSHRVYSID-LIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVM-- 73 (202)
Q Consensus 4 ~~~~~v~~~D-~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-------~~~~~~lvG~S~Gg~~a~~~a~~-- 73 (202)
.+...++-+| ..|.|.|....+. ...+-++.++++.++++.. ...+++|.|.|.||..+..+|..
T Consensus 115 ~~~anllfiDqPvGtGfSy~~~~~-----~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~ 189 (437)
T PLN02209 115 TKTANIIFLDQPVGSGFSYSKTPI-----ERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEIS 189 (437)
T ss_pred hhcCcEEEecCCCCCCccCCCCCC-----CccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHH
Confidence 3557899999 7788999654421 1122223345555555442 23589999999999876666643
Q ss_pred --C------cccccceeEeccchh
Q 028885 74 --E------PEICRGMILLNISLR 89 (202)
Q Consensus 74 --~------p~~v~~lvli~~~~~ 89 (202)
. +-.++|+++.++...
T Consensus 190 ~~~~~~~~~~inl~Gi~igng~td 213 (437)
T PLN02209 190 KGNYICCNPPINLQGYVLGNPITH 213 (437)
T ss_pred hhcccccCCceeeeeEEecCcccC
Confidence 1 125789999888654
No 198
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=95.71 E-value=0.043 Score=42.67 Aligned_cols=85 Identities=16% Similarity=0.193 Sum_probs=51.8
Q ss_pred CCcceEEEec-cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh---cCCceEEEecChhhHHHHHHHHh----C-
Q 028885 4 AKSHRVYSID-LIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVM----E- 74 (202)
Q Consensus 4 ~~~~~v~~~D-~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~----~- 74 (202)
.+...++-+| .-|.|.|....+.... ....+.+++.+.+..+++.. ...+++|+|.|.||..+..+|.. .
T Consensus 113 ~~~anllfiDqPvGtGfSy~~~~~~~~-~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~ 191 (433)
T PLN03016 113 TKMANIIFLDQPVGSGFSYSKTPIDKT-GDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNY 191 (433)
T ss_pred hhcCcEEEecCCCCCCccCCCCCCCcc-CCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcc
Confidence 3557899999 7799999754421100 00011123344444444332 34689999999999877666643 1
Q ss_pred -----cccccceeEeccchh
Q 028885 75 -----PEICRGMILLNISLR 89 (202)
Q Consensus 75 -----p~~v~~lvli~~~~~ 89 (202)
+-.++|+++-++...
T Consensus 192 ~~~~~~inLkGi~iGNg~t~ 211 (433)
T PLN03016 192 ICCEPPINLQGYMLGNPVTY 211 (433)
T ss_pred cccCCcccceeeEecCCCcC
Confidence 125889999888543
No 199
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.57 E-value=0.018 Score=38.20 Aligned_cols=44 Identities=11% Similarity=0.133 Sum_probs=37.2
Q ss_pred HHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchhhh
Q 028885 48 KDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRML 91 (202)
Q Consensus 48 ~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~~ 91 (202)
++.-....++-|.||||..|..+..+||+.+.++|.+++..+..
T Consensus 96 eEalpgs~~~sgcsmGayhA~nfvfrhP~lftkvialSGvYdar 139 (227)
T COG4947 96 EEALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALSGVYDAR 139 (227)
T ss_pred HhhcCCCccccccchhhhhhhhhheeChhHhhhheeecceeeHH
Confidence 33334567889999999999999999999999999999986643
No 200
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=95.48 E-value=0.05 Score=38.52 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=28.8
Q ss_pred ceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
|++-||||||+.+-+.+...++..-++.|+++-.
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~~~r~gniliSFN 124 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFDVERAGNILISFN 124 (250)
T ss_pred CeeeeecccchHHHHHHhhhccCcccceEEEecC
Confidence 6788999999999999998887666788888764
No 201
>PLN02606 palmitoyl-protein thioesterase
Probab=95.46 E-value=0.058 Score=39.50 Aligned_cols=54 Identities=15% Similarity=0.046 Sum_probs=41.3
Q ss_pred CCHHHHHHHHHHHHHHhc--CCceEEEecChhhHHHHHHHHhCcc--cccceeEeccc
Q 028885 34 YTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE--ICRGMILLNIS 87 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~--~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvli~~~ 87 (202)
....++++.+.+.+.... .+-+++||+|-||.++-.++.+.|+ .|+.+|.++++
T Consensus 74 ~~~~~Qv~~vce~l~~~~~L~~G~naIGfSQGglflRa~ierc~~~p~V~nlISlggp 131 (306)
T PLN02606 74 MPLRQQASIACEKIKQMKELSEGYNIVAESQGNLVARGLIEFCDNAPPVINYVSLGGP 131 (306)
T ss_pred cCHHHHHHHHHHHHhcchhhcCceEEEEEcchhHHHHHHHHHCCCCCCcceEEEecCC
Confidence 455566666555554421 2469999999999999999999987 49999999876
No 202
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=95.42 E-value=0.046 Score=43.90 Aligned_cols=61 Identities=23% Similarity=0.295 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHHHHHHHh-c-CCceEEEecChhhHHHHHHHHhCcccccceeEeccchhhhh
Q 028885 32 PFYTFETWASQLNDFCKDV-V-KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLRMLH 92 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l-~-~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~~~~ 92 (202)
..-|+.++.+....++++- . .+.+.++|-|.||++....+.+.|+.++++|+--|......
T Consensus 504 K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvlt 566 (682)
T COG1770 504 KKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLT 566 (682)
T ss_pred ccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheeecCCccchhh
Confidence 3457778877777666542 1 24699999999999999999999999999999999877554
No 203
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.41 E-value=0.11 Score=41.02 Aligned_cols=84 Identities=21% Similarity=0.133 Sum_probs=55.4
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHH-----------HHHHHHh-c--CCceEEEecChhhHHH
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQL-----------NDFCKDV-V--KDQAFFICNSIGGLVG 67 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~l-~--~~~~~lvG~S~Gg~~a 67 (202)
.|+.+|.++.-|- ||..+...... ....+.+.+.+.- .+++++. + .+.-...|.|.||.-+
T Consensus 55 ~~~~G~A~~~TD~-Gh~~~~~~~~~----~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqg 129 (474)
T PF07519_consen 55 ALARGYATASTDS-GHQGSAGSDDA----SFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQG 129 (474)
T ss_pred hhhcCeEEEEecC-CCCCCcccccc----cccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchH
Confidence 3677888888885 66555431000 0123443333321 1222222 2 3457899999999999
Q ss_pred HHHHHhCcccccceeEeccchhh
Q 028885 68 LQAAVMEPEICRGMILLNISLRM 90 (202)
Q Consensus 68 ~~~a~~~p~~v~~lvli~~~~~~ 90 (202)
+..|.+||+.++++|.-+|....
T Consensus 130 l~~AQryP~dfDGIlAgaPA~~~ 152 (474)
T PF07519_consen 130 LMAAQRYPEDFDGILAGAPAINW 152 (474)
T ss_pred HHHHHhChhhcCeEEeCCchHHH
Confidence 99999999999999999998654
No 204
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=95.21 E-value=0.053 Score=40.64 Aligned_cols=73 Identities=14% Similarity=0.036 Sum_probs=40.5
Q ss_pred CCcceEEEeccCCC--CCCCCCCCCCC--C----CCCCCCHHHHHHHHHHH-----H-HHhcCCceEEEecChhhHHHHH
Q 028885 4 AKSHRVYSIDLIGY--GYSDKPNPRDF--F----DKPFYTFETWASQLNDF-----C-KDVVKDQAFFICNSIGGLVGLQ 69 (202)
Q Consensus 4 ~~~~~v~~~D~~G~--G~S~~~~~~~~--~----~~~~~~~~~~~~~l~~~-----~-~~l~~~~~~lvG~S~Gg~~a~~ 69 (202)
+.+|-|.++|++|- |.......... . -+....+..+.+.+.+. + .++...+|.++|||+||..++.
T Consensus 96 s~Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~ 175 (365)
T COG4188 96 SYGFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAME 175 (365)
T ss_pred hCceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHH
Confidence 34699999999994 43333221100 0 01112222233333322 0 1122358999999999999999
Q ss_pred HHHhCcc
Q 028885 70 AAVMEPE 76 (202)
Q Consensus 70 ~a~~~p~ 76 (202)
.+--+.+
T Consensus 176 laGA~~~ 182 (365)
T COG4188 176 LAGAELD 182 (365)
T ss_pred hcccccc
Confidence 8866554
No 205
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=95.21 E-value=0.091 Score=38.09 Aligned_cols=52 Identities=15% Similarity=-0.018 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHhc--CCceEEEecChhhHHHHHHHHhCcc-cccceeEeccc
Q 028885 36 FETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE-ICRGMILLNIS 87 (202)
Q Consensus 36 ~~~~~~~l~~~~~~l~--~~~~~lvG~S~Gg~~a~~~a~~~p~-~v~~lvli~~~ 87 (202)
....++.+.+.++... .+-+++||+|-||.++-.++.++|+ .|+.+|.++++
T Consensus 61 v~~Qv~~vc~~l~~~p~L~~G~~~IGfSQGgl~lRa~vq~c~~~~V~nlISlggp 115 (279)
T PF02089_consen 61 VNDQVEQVCEQLANDPELANGFNAIGFSQGGLFLRAYVQRCNDPPVHNLISLGGP 115 (279)
T ss_dssp HHHHHHHHHHHHHH-GGGTT-EEEEEETCHHHHHHHHHHH-TSS-EEEEEEES--
T ss_pred HHHHHHHHHHHHhhChhhhcceeeeeeccccHHHHHHHHHCCCCCceeEEEecCc
Confidence 3444444444444322 2579999999999999999999875 69999999876
No 206
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=95.10 E-value=0.044 Score=41.65 Aligned_cols=35 Identities=23% Similarity=0.290 Sum_probs=31.1
Q ss_pred ceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
|++++|+|.||.+|...|.-.|..+++++=-++.+
T Consensus 185 p~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~ 219 (403)
T PF11144_consen 185 PKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYA 219 (403)
T ss_pred cEEEEecCcHHHHHHHHHhhCccceeEEEecCccc
Confidence 89999999999999999999999999887666543
No 207
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=94.71 E-value=0.16 Score=39.69 Aligned_cols=81 Identities=21% Similarity=0.132 Sum_probs=54.5
Q ss_pred CcceEEEec-cCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH-------hc--CCceEEEecChhhHHHHHHHHhC
Q 028885 5 KSHRVYSID-LIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD-------VV--KDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 5 ~~~~v~~~D-~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------l~--~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
..-.++-+| .-|.|.|....+ ....+.+...+|+..+++. .. ..+.+|+|.|.||.-+..+|..-
T Consensus 145 ~~adLvFiDqPvGTGfS~a~~~-----e~~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L 219 (498)
T COG2939 145 DFADLVFIDQPVGTGFSRALGD-----EKKKDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHEL 219 (498)
T ss_pred cCCceEEEecCcccCccccccc-----ccccchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHH
Confidence 456789999 779999986222 2334555555565555443 22 24899999999999888888653
Q ss_pred cc---cccceeEeccchhh
Q 028885 75 PE---ICRGMILLNISLRM 90 (202)
Q Consensus 75 p~---~v~~lvli~~~~~~ 90 (202)
-+ ..+++|++.+....
T Consensus 220 ~~~~~~~~~~~nlssvlig 238 (498)
T COG2939 220 LEDNIALNGNVNLSSVLIG 238 (498)
T ss_pred HHhccccCCceEeeeeeec
Confidence 33 47777777776543
No 208
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.71 E-value=0.13 Score=35.54 Aligned_cols=43 Identities=16% Similarity=0.270 Sum_probs=33.7
Q ss_pred HHHHHhcCCceEEEecChhhHHHHHHHHhCcc--cccceeEeccc
Q 028885 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--ICRGMILLNIS 87 (202)
Q Consensus 45 ~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvli~~~ 87 (202)
.++.....+.+.+|.||.||...+.+..++|+ +|.++.+.+.+
T Consensus 182 ~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 182 NIVLPAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred HHhcccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 33344456789999999999999999999885 56677777665
No 209
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=94.42 E-value=0.096 Score=39.75 Aligned_cols=69 Identities=23% Similarity=0.135 Sum_probs=47.5
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH----hcCCceEEEecChhhHHHHHHHHhCcc----
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD----VVKDQAFFICNSIGGLVGLQAAVMEPE---- 76 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----l~~~~~~lvG~S~Gg~~a~~~a~~~p~---- 76 (202)
.++.|+-+|-.-+=- ...|.+..++|+.++++. .+.+++.|+|+|+|+=+.-....+-|.
T Consensus 286 ~gvpVvGvdsLRYfW------------~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADvlP~~~n~L~~~~r~ 353 (456)
T COG3946 286 QGVPVVGVDSLRYFW------------SERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGADVLPFAYNRLPPATRQ 353 (456)
T ss_pred CCCceeeeehhhhhh------------ccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccchhhHHHHHhCCHHHHH
Confidence 356777777554433 345778899999888875 456789999999999777665555443
Q ss_pred cccceeEec
Q 028885 77 ICRGMILLN 85 (202)
Q Consensus 77 ~v~~lvli~ 85 (202)
+|+-+.|++
T Consensus 354 ~v~~~~ll~ 362 (456)
T COG3946 354 RVRMVSLLG 362 (456)
T ss_pred HHHHHHHHh
Confidence 355555544
No 210
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=94.15 E-value=0.037 Score=42.06 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=64.3
Q ss_pred eEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc---CCceEEEecChhhHHHHHHHHhCcccccceeEe
Q 028885 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV---KDQAFFICNSIGGLVGLQAAVMEPEICRGMILL 84 (202)
Q Consensus 8 ~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~---~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli 84 (202)
+-+.+.+|=+|.|.+.... +...|+..-+.|..++.+.++ .++.+--|-|-||+.++.+=.-||+.|++.|.-
T Consensus 90 NQl~vEhRfF~~SrP~p~D----W~~Lti~QAA~D~Hri~~A~K~iY~~kWISTG~SKGGmTa~y~rrFyP~DVD~tVaY 165 (448)
T PF05576_consen 90 NQLSVEHRFFGPSRPEPAD----WSYLTIWQAASDQHRIVQAFKPIYPGKWISTGGSKGGMTAVYYRRFYPDDVDGTVAY 165 (448)
T ss_pred ceEEEEEeeccCCCCCCCC----cccccHhHhhHHHHHHHHHHHhhccCCceecCcCCCceeEEEEeeeCCCCCCeeeee
Confidence 4577889999999876532 677899999999999998886 367889999999999999999999999998876
Q ss_pred ccc
Q 028885 85 NIS 87 (202)
Q Consensus 85 ~~~ 87 (202)
-.+
T Consensus 166 VAP 168 (448)
T PF05576_consen 166 VAP 168 (448)
T ss_pred ecc
Confidence 544
No 211
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=94.11 E-value=0.45 Score=36.17 Aligned_cols=45 Identities=13% Similarity=0.137 Sum_probs=35.1
Q ss_pred HHHHHHHHh---cCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 42 QLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 42 ~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
.+.+++++. .++++++.|.|==|..++..|+ ..+||+++|-+...
T Consensus 158 ~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa-~D~RV~aivP~Vid 205 (367)
T PF10142_consen 158 AVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAA-VDPRVKAIVPIVID 205 (367)
T ss_pred HHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhc-cCcceeEEeeEEEc
Confidence 344555554 5789999999999999999998 55789888877664
No 212
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=93.98 E-value=0.11 Score=37.66 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=24.0
Q ss_pred HHHHHhcCCceEEEecChhhHHHHHHHHhCc
Q 028885 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 45 ~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
++.+......+.+.|||+||.+|..+..++.
T Consensus 268 ~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T KOG4540|consen 268 AVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 3334444568999999999999999988763
No 213
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=93.98 E-value=0.11 Score=37.66 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=24.0
Q ss_pred HHHHHhcCCceEEEecChhhHHHHHHHHhCc
Q 028885 45 DFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 45 ~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
++.+......+.+.|||+||.+|..+..++.
T Consensus 268 ~v~~~Ypda~iwlTGHSLGGa~AsLlG~~fg 298 (425)
T COG5153 268 AVRRIYPDARIWLTGHSLGGAIASLLGIRFG 298 (425)
T ss_pred HHHHhCCCceEEEeccccchHHHHHhccccC
Confidence 3334444568999999999999999988763
No 214
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=93.36 E-value=0.035 Score=38.56 Aligned_cols=82 Identities=11% Similarity=0.006 Sum_probs=49.2
Q ss_pred CcceEEEeccCCC-CCCCC--CCCCCCCCCCCCCHHHHHHHHHHHHHHhc----CCceEEEecChhhHHHHHHHHhCccc
Q 028885 5 KSHRVYSIDLIGY-GYSDK--PNPRDFFDKPFYTFETWASQLNDFCKDVV----KDQAFFICNSIGGLVGLQAAVMEPEI 77 (202)
Q Consensus 5 ~~~~v~~~D~~G~-G~S~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~l~----~~~~~lvG~S~Gg~~a~~~a~~~p~~ 77 (202)
.+|.|+.||+-+= -.|.. ....+.- -...+.+..-+++..+++.+. .+++-++|.+|||.++..+....| .
T Consensus 66 ~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w-~~~~~~~~~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~-~ 143 (242)
T KOG3043|consen 66 NGYTVLVPDFFRGDPWSPSLQKSERPEW-MKGHSPPKIWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDP-E 143 (242)
T ss_pred CCcEEEcchhhcCCCCCCCCChhhhHHH-HhcCCcccchhHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccch-h
Confidence 4799999998632 11111 0000000 011233333445555555443 457889999999999999999988 5
Q ss_pred ccceeEeccch
Q 028885 78 CRGMILLNISL 88 (202)
Q Consensus 78 v~~lvli~~~~ 88 (202)
+.+.|..-|..
T Consensus 144 f~a~v~~hps~ 154 (242)
T KOG3043|consen 144 FDAGVSFHPSF 154 (242)
T ss_pred heeeeEecCCc
Confidence 77777776653
No 215
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=93.13 E-value=0.63 Score=32.90 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=25.8
Q ss_pred CCceEEEecChhhHHHHHHHHhCcc------cccceeEeccc
Q 028885 52 KDQAFFICNSIGGLVGLQAAVMEPE------ICRGMILLNIS 87 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~p~------~v~~lvli~~~ 87 (202)
.++++++|+|.|+.++...+.+.-+ ..-..|+++-+
T Consensus 47 ~~~vvV~GySQGA~Va~~~~~~l~~~~~~~~~~l~fVl~gnP 88 (225)
T PF08237_consen 47 GGPVVVFGYSQGAVVASNVLRRLAADGDPPPDDLSFVLIGNP 88 (225)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHhcCCCCcCceEEEEecCC
Confidence 4789999999999999997766421 23346666544
No 216
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=92.98 E-value=0.13 Score=40.08 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=39.5
Q ss_pred CCHHHHHHH---HHHHHHHhcCC--ceEEEecChhhHHHHHHHHhCcc---cccceeEeccchh
Q 028885 34 YTFETWASQ---LNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEPE---ICRGMILLNISLR 89 (202)
Q Consensus 34 ~~~~~~~~~---l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~~p~---~v~~lvli~~~~~ 89 (202)
.-+.+++.. +.+.+++.|.+ .|.|+|+|.||+.++.+.+. |+ .++++|+.++...
T Consensus 156 ~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 156 LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 445555544 44556667754 69999999999988887765 44 5899999988754
No 217
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=92.36 E-value=0.47 Score=32.71 Aligned_cols=55 Identities=18% Similarity=0.168 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHHHh---c--CCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 35 TFETWASQLNDFCKDV---V--KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l---~--~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.....++.+..++++. + ...+.+-|.||||.+++..+..+|..+.+.+...+...
T Consensus 70 ~~~~aa~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p 129 (206)
T KOG2112|consen 70 GLHRAADNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLP 129 (206)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccc
Confidence 4455555566666543 2 34689999999999999999999888888877776533
No 218
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=91.40 E-value=0.64 Score=37.17 Aligned_cols=58 Identities=14% Similarity=-0.013 Sum_probs=40.6
Q ss_pred CCCCHHHHHHHHHHHHHHh---cC--CceEEEecChhhHHHHHHHHhC--cccccceeEeccchh
Q 028885 32 PFYTFETWASQLNDFCKDV---VK--DQAFFICNSIGGLVGLQAAVME--PEICRGMILLNISLR 89 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l---~~--~~~~lvG~S~Gg~~a~~~a~~~--p~~v~~lvli~~~~~ 89 (202)
..+-+.|+...|+-+-+.+ |. ++|+|+|||.||..+......- ...++++|+.++...
T Consensus 182 gN~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs~~ 246 (535)
T PF00135_consen 182 GNYGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGSAL 246 (535)
T ss_dssp STHHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--TT
T ss_pred hhhhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccccc
Confidence 3566777777766665554 43 4799999999998877766552 246999999998643
No 219
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=0.45 Score=37.47 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=31.9
Q ss_pred HhcCCceEEEecChhhHHHHHHHHh-----CcccccceeEeccchhh
Q 028885 49 DVVKDQAFFICNSIGGLVGLQAAVM-----EPEICRGMILLNISLRM 90 (202)
Q Consensus 49 ~l~~~~~~lvG~S~Gg~~a~~~a~~-----~p~~v~~lvli~~~~~~ 90 (202)
.+|.+|+.|||+|+|+.+....... .-..|..+++++.+...
T Consensus 443 ~qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaPv~~ 489 (633)
T KOG2385|consen 443 SQGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAPVPT 489 (633)
T ss_pred ccCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCCccC
Confidence 4678999999999999998854432 23358999999887543
No 220
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.72 E-value=0.31 Score=35.03 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=30.8
Q ss_pred cCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 51 VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
|..++.++|-||||.+|......|+..|.-+=.+++.
T Consensus 193 g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~l~~~ 229 (371)
T KOG1551|consen 193 GLGNLNLVGRSMGGDIANQVGSLHQKPVATAPCLNSS 229 (371)
T ss_pred CcccceeeeeecccHHHHhhcccCCCCcccccccccc
Confidence 5679999999999999999999998877666555554
No 221
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=90.70 E-value=0.9 Score=39.92 Aligned_cols=59 Identities=19% Similarity=0.136 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHHhc-CCceEEEecChhhHHHHHHHHhC--cccccceeEeccchhh
Q 028885 32 PFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVME--PEICRGMILLNISLRM 90 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~~--p~~v~~lvli~~~~~~ 90 (202)
..-++++.++...+-++.+. ..|..++|+|+|+.++..+|..- .+....+|++++...+
T Consensus 2160 P~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~~~~~~lillDGspty 2221 (2376)
T KOG1202|consen 2160 PLDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQEQQSPAPLILLDGSPTY 2221 (2376)
T ss_pred CcchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHhhcCCCcEEEecCchHH
Confidence 34578888887777777765 46899999999999999999764 3346679999887554
No 222
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=90.59 E-value=0.62 Score=37.73 Aligned_cols=88 Identities=14% Similarity=0.131 Sum_probs=57.1
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHH--hcCCceEEEecChhhHHHHHHHHhCcccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDF-FDKPFYTFETWASQLNDFCKD--VVKDQAFFICNSIGGLVGLQAAVMEPEICRG 80 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~ 80 (202)
..|+-+...|.||-|.-...--... .-..+-+++++..-.+-+++. ....+..+.|.|-||.++....-++|+.+..
T Consensus 497 d~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~a 576 (712)
T KOG2237|consen 497 DRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGA 576 (712)
T ss_pred ecceEEEEEeeccCcccccchhhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhh
Confidence 4556666778888776543211000 001234555555444444432 1235789999999999999999999999999
Q ss_pred eeEeccchhhh
Q 028885 81 MILLNISLRML 91 (202)
Q Consensus 81 lvli~~~~~~~ 91 (202)
+|+--|.....
T Consensus 577 via~VpfmDvL 587 (712)
T KOG2237|consen 577 VIAKVPFMDVL 587 (712)
T ss_pred hhhcCcceehh
Confidence 99988875543
No 223
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.46 E-value=1.1 Score=29.81 Aligned_cols=36 Identities=11% Similarity=-0.075 Sum_probs=29.5
Q ss_pred CCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 52 KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.+.+.+|++|||-.+|-+..... ++++.+.|++..-
T Consensus 56 y~hirlvAwSMGVwvAeR~lqg~--~lksatAiNGTgL 91 (214)
T COG2830 56 YRHIRLVAWSMGVWVAERVLQGI--RLKSATAINGTGL 91 (214)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhc--cccceeeecCCCC
Confidence 35778999999999999988775 4888899987643
No 224
>PRK10279 hypothetical protein; Provisional
Probab=90.31 E-value=0.27 Score=36.32 Aligned_cols=35 Identities=26% Similarity=0.158 Sum_probs=29.0
Q ss_pred HHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
-+.+.+++.++..-.++|.|+|+.++..||....+
T Consensus 22 GVL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~~ 56 (300)
T PRK10279 22 GVINALKKVGIEIDIVAGCSIGSLVGAAYACDRLS 56 (300)
T ss_pred HHHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCChH
Confidence 45566777888888999999999999999987644
No 225
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=90.08 E-value=1.6 Score=30.24 Aligned_cols=52 Identities=13% Similarity=-0.076 Sum_probs=40.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecCh----hhHHHHHHHHhCc-ccccceeEe
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSI----GGLVGLQAAVMEP-EICRGMILL 84 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~----Gg~~a~~~a~~~p-~~v~~lvli 84 (202)
..|+.+.+++.+.+++++.+ -.++|+|+|. |..++.++|++-- ..+..++-+
T Consensus 89 ~~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l 145 (202)
T cd01714 89 AGADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKI 145 (202)
T ss_pred cCCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEE
Confidence 46789999999999998887 5799999999 8899999887732 234555544
No 226
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=89.50 E-value=1.5 Score=34.50 Aligned_cols=86 Identities=15% Similarity=0.060 Sum_probs=52.3
Q ss_pred CcceEEEeccC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH---hcCCceEEEecChhhHHHHHHHHh----C--
Q 028885 5 KSHRVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD---VVKDQAFFICNSIGGLVGLQAAVM----E-- 74 (202)
Q Consensus 5 ~~~~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---l~~~~~~lvG~S~Gg~~a~~~a~~----~-- 74 (202)
+.-.++-+|.| |-|.|....+.........+.++.-+.|..+++. ...+++.|.|.|.+|...-.+|.. .
T Consensus 116 k~aNiLfLd~PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~ 195 (454)
T KOG1282|consen 116 KEANILFLDQPVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKK 195 (454)
T ss_pred ccccEEEEecCCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhcccc
Confidence 34567788877 7788876554222111223334444444444443 245799999999999666665542 2
Q ss_pred ----cccccceeEeccchhh
Q 028885 75 ----PEICRGMILLNISLRM 90 (202)
Q Consensus 75 ----p~~v~~lvli~~~~~~ 90 (202)
+-.++|+++=+|....
T Consensus 196 ~~~~~iNLkG~~IGNg~td~ 215 (454)
T KOG1282|consen 196 CCKPNINLKGYAIGNGLTDP 215 (454)
T ss_pred ccCCcccceEEEecCcccCc
Confidence 1258888888887553
No 227
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=89.49 E-value=1 Score=31.48 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceE-EEecChhhHHHHHHHHh---------CcccccceeEeccc
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAF-FICNSIGGLVGLQAAVM---------EPEICRGMILLNIS 87 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~-lvG~S~Gg~~a~~~a~~---------~p~~v~~lvli~~~ 87 (202)
....+.-.+.+++.+.+.| |+. |+|+|-|+.++..++.. +| .++=+|++++.
T Consensus 85 ~~~~eesl~yl~~~i~enG--PFDGllGFSQGA~laa~l~~~~~~~~~~~~~P-~~kF~v~~SGf 146 (230)
T KOG2551|consen 85 YFGFEESLEYLEDYIKENG--PFDGLLGFSQGAALAALLAGLGQKGLPYVKQP-PFKFAVFISGF 146 (230)
T ss_pred ccChHHHHHHHHHHHHHhC--CCccccccchhHHHHHHhhcccccCCcccCCC-CeEEEEEEecC
Confidence 3455566666777666664 776 89999999999998872 22 26778888775
No 228
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=89.32 E-value=0.59 Score=34.71 Aligned_cols=35 Identities=14% Similarity=0.028 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCc
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
--+.+.+++.++..-.++|.|+|+.++..+++.++
T Consensus 31 iGvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~~ 65 (306)
T cd07225 31 IGVIKALEEAGIPVDMVGGTSIGAFIGALYAEERN 65 (306)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 34556677778877789999999999999998753
No 229
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=89.25 E-value=2.6 Score=31.06 Aligned_cols=79 Identities=13% Similarity=0.169 Sum_probs=57.6
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChh-----hHHHHHHHHhCccccc
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIG-----GLVGLQAAVMEPEICR 79 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~G-----g~~a~~~a~~~p~~v~ 79 (202)
....|+..||--.-.-.... ..+.++++.+.+.++++.+|.+ .++++.+.= +.+++.-+..+|..-.
T Consensus 129 p~~~vyitDW~dAr~Vp~~~-------G~FdldDYIdyvie~~~~~Gp~-~hv~aVCQP~vPvLAAisLM~~~~~p~~Ps 200 (415)
T COG4553 129 PYHDVYITDWVDARMVPLEA-------GHFDLDDYIDYVIEMINFLGPD-AHVMAVCQPTVPVLAAISLMEEDGDPNVPS 200 (415)
T ss_pred cccceeEeeccccceeeccc-------CCccHHHHHHHHHHHHHHhCCC-CcEEEEecCCchHHHHHHHHHhcCCCCCCc
Confidence 34567777776554443333 5689999999999999999875 777776654 3455555566788899
Q ss_pred ceeEeccchhhh
Q 028885 80 GMILLNISLRML 91 (202)
Q Consensus 80 ~lvli~~~~~~~ 91 (202)
+++++++++...
T Consensus 201 sMtlmGgPIDaR 212 (415)
T COG4553 201 SMTLMGGPIDAR 212 (415)
T ss_pred eeeeecCccccc
Confidence 999999887654
No 230
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=88.95 E-value=0.4 Score=35.75 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=23.7
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
+.+++++.|.+|-.++|||+|=..|+..+
T Consensus 74 l~~~l~~~Gi~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 74 LARLLRSWGIKPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHHHHHTTHCESEEEESTTHHHHHHHHT
T ss_pred hhhhhcccccccceeeccchhhHHHHHHC
Confidence 44667788899999999999988877655
No 231
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=88.21 E-value=0.72 Score=33.95 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHH
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
+.++++++|+++-.++|||+|-..|+..+-
T Consensus 72 ~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 72 LARLWRSWGVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHHHcCCcccEEEecCHHHHHHHHHhC
Confidence 345567888999999999999988877663
No 232
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=88.19 E-value=0.88 Score=30.56 Aligned_cols=36 Identities=11% Similarity=-0.042 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
--+.+.+++.++..-.++|.|.|+.++..++...+.
T Consensus 14 ~Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~~ 49 (172)
T cd07198 14 VGVAKALRERGPLIDIIAGTSAGAIVAALLASGRDL 49 (172)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCH
Confidence 344555666677888899999999999999987543
No 233
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=87.86 E-value=0.87 Score=33.16 Aligned_cols=34 Identities=18% Similarity=-0.018 Sum_probs=27.6
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhC
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
--+.+.+++.++..-.++|.|+|+.++..||..+
T Consensus 26 iGVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 26 IGILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 3455666777887778999999999999999874
No 234
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=87.62 E-value=0.91 Score=33.73 Aligned_cols=38 Identities=13% Similarity=-0.059 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
+.--+.+.|++.++..-.+.|.|+|+.++..+|..+.+
T Consensus 25 ~hiGVl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~~ 62 (306)
T COG1752 25 AHIGVLKALEEAGIPIDVIAGTSAGAIVAALYAAGMDE 62 (306)
T ss_pred HHHHHHHHHHHcCCCccEEEecCHHHHHHHHHHcCCCh
Confidence 33456677888888999999999999999999986543
No 235
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=87.44 E-value=0.88 Score=33.52 Aligned_cols=30 Identities=10% Similarity=-0.063 Sum_probs=24.2
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHH
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
+.+.+++.+.++..++|||+|=..|+..+-
T Consensus 66 l~~~l~~~g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 66 AWRALLALLPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHHHhcCCCCcEEeecCHHHHHHHHHhC
Confidence 445567778899999999999988887663
No 236
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=87.43 E-value=0.23 Score=37.76 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHH
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQ 69 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~ 69 (202)
+--++.++++.+.+....++++.++|||+||.++..
T Consensus 131 ~lG~Rla~~~~e~~~~~si~kISfvghSLGGLvar~ 166 (405)
T KOG4372|consen 131 VLGERLAEEVKETLYDYSIEKISFVGHSLGGLVARY 166 (405)
T ss_pred eeecccHHHHhhhhhccccceeeeeeeecCCeeeeE
Confidence 344556666666666666789999999999987754
No 237
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=86.90 E-value=1.1 Score=30.71 Aligned_cols=34 Identities=9% Similarity=-0.115 Sum_probs=26.1
Q ss_pred HHHHHHHHhcCCceEEEecChhhHHHHHHHHhCc
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
-+.+.+++.+...-.++|.|.||.++..++..++
T Consensus 16 Gvl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 16 GALKALEEAGILKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred HHHHHHHHcCCCcceEEEECHHHHHHHHHHcCCC
Confidence 3444455567777889999999999999998653
No 238
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=86.77 E-value=1.3 Score=31.31 Aligned_cols=34 Identities=18% Similarity=-0.002 Sum_probs=26.2
Q ss_pred HHHHHHHHhcCCceEEEecChhhHHHHHHHHhCc
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
-+.+.+++.+.+.-.++|.|.|+.++..++..++
T Consensus 17 GvL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 17 GFLAALLEMGLEPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred HHHHHHHHcCCCceEEEEeCHHHHHHHHHHcCCC
Confidence 3444555667777789999999999999997653
No 239
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=85.85 E-value=1.1 Score=32.77 Aligned_cols=29 Identities=24% Similarity=0.074 Sum_probs=22.8
Q ss_pred HHHHHHhc-CCceEEEecChhhHHHHHHHH
Q 028885 44 NDFCKDVV-KDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 44 ~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
.+.+.+.+ +++..++|||+|=..|+..+-
T Consensus 73 ~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 73 YLKLKEQGGLKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred HHHHHHcCCCCCCEEeecCHHHHHHHHHhC
Confidence 34456666 889999999999988877663
No 240
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=85.71 E-value=3.4 Score=29.96 Aligned_cols=54 Identities=15% Similarity=0.053 Sum_probs=38.3
Q ss_pred CCHHHHHHHHHHHHHHhc--CCceEEEecChhhHHHHHHHHhCcc-cccceeEeccc
Q 028885 34 YTFETWASQLNDFCKDVV--KDQAFFICNSIGGLVGLQAAVMEPE-ICRGMILLNIS 87 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~--~~~~~lvG~S~Gg~~a~~~a~~~p~-~v~~lvli~~~ 87 (202)
..+.++++-+.+.+.... ..-++++|.|-||.++-.++...++ .|+.+|.++++
T Consensus 71 ~pl~~Qv~~~ce~v~~m~~lsqGynivg~SQGglv~Raliq~cd~ppV~n~ISL~gP 127 (296)
T KOG2541|consen 71 MPLWEQVDVACEKVKQMPELSQGYNIVGYSQGGLVARALIQFCDNPPVKNFISLGGP 127 (296)
T ss_pred ccHHHHHHHHHHHHhcchhccCceEEEEEccccHHHHHHHHhCCCCCcceeEeccCC
Confidence 445555555554444322 2469999999999999998877654 48999988875
No 241
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=84.31 E-value=1.7 Score=29.24 Aligned_cols=34 Identities=21% Similarity=0.139 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
+.+.+++.+...-.++|.|.|+.++..++...+.
T Consensus 18 vl~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 18 VLRALEEEGIEIDIIAGSSIGALVGALYAAGHLD 51 (175)
T ss_pred HHHHHHHCCCCeeEEEEeCHHHHHHHHHHcCCCH
Confidence 3344455666667799999999999999987654
No 242
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=84.13 E-value=7.3 Score=23.68 Aligned_cols=47 Identities=13% Similarity=0.063 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhh--HHHHHHHHhCcccccceeE
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGG--LVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg--~~a~~~a~~~p~~v~~lvl 83 (202)
+.=...+..+++.....++++||=|--. -+-..+|.+||++|.++.+
T Consensus 49 ~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 49 EHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred hHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEEEE
Confidence 4556678888888888999999988754 4555688899999988754
No 243
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=83.59 E-value=1.9 Score=30.20 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
--+.+.+.+.+...-.++|.|.|+.++..++...+.
T Consensus 14 ~Gvl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~~ 49 (215)
T cd07209 14 AGVLKALAEAGIEPDIISGTSIGAINGALIAGGDPE 49 (215)
T ss_pred HHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCcH
Confidence 344555666677677899999999999999998753
No 244
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=83.44 E-value=1.1 Score=35.02 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
+.--+.+.+.+.++.+-++.|.|.|+.+|..++...++.+..+
T Consensus 87 ~hiGVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~eel~~~ 129 (421)
T cd07230 87 FHIGVLKALFEANLLPRIISGSSAGSIVAAILCTHTDEEIPEL 129 (421)
T ss_pred HHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHHHHH
Confidence 3334445555556677789999999999999999777664443
No 245
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=82.49 E-value=1.4 Score=29.30 Aligned_cols=50 Identities=16% Similarity=0.194 Sum_probs=30.4
Q ss_pred eccCCCCCCCCCCCCCCCCCCCCCHHHHHHHH----HHHHHHhc----CCceEEEecChhhH
Q 028885 12 IDLIGYGYSDKPNPRDFFDKPFYTFETWASQL----NDFCKDVV----KDQAFFICNSIGGL 65 (202)
Q Consensus 12 ~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~l~----~~~~~lvG~S~Gg~ 65 (202)
+-+-|||....... . ...++.+.++.-+ ..+.+..+ .+++.|+|.||+..
T Consensus 59 w~lVGHG~~~~~~~-~---l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 59 WQLVGHGRDEFNNQ-T---LAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEE--EESSTSSS-E---ETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred EEEEEeCCCcCCCc-e---eCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 55679998822111 1 3568999999988 44444442 46899999999887
No 246
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=82.32 E-value=4.6 Score=26.61 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=35.1
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCc-eEEEecChhhHHHHH
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLVGLQ 69 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~~lvG~S~Gg~~a~~ 69 (202)
.+.++-.|++.|.+|- .++.+.+++.+.+.. ..| +. .++||-|.|=-=++.
T Consensus 63 ~i~~~~~vi~Ld~~Gk---------------~~sSe~fA~~l~~~~-~~G-~~i~f~IGG~~Gl~~~~~ 114 (155)
T COG1576 63 AIPKGSYVVLLDIRGK---------------ALSSEEFADFLERLR-DDG-RDISFLIGGADGLSEAVK 114 (155)
T ss_pred hcCCCCeEEEEecCCC---------------cCChHHHHHHHHHHH-hcC-CeEEEEEeCcccCCHHHH
Confidence 4667788999999875 467778887777644 344 44 568998888544333
No 247
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=81.82 E-value=1.4 Score=34.29 Aligned_cols=44 Identities=14% Similarity=0.003 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccccccee
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lv 82 (202)
+.--+.+.+.+.+..+-+++|.|.|+.+|..++...++.+..++
T Consensus 81 ~h~GVlkaL~e~gllp~iI~GtSAGAivaalla~~t~~el~~~~ 124 (407)
T cd07232 81 YHFGVVKALLDADLLPNVISGTSGGSLVAALLCTRTDEELKQLL 124 (407)
T ss_pred HHHHHHHHHHhCCCCCCEEEEECHHHHHHHHHHcCCHHHHHHHH
Confidence 33344555555567788899999999999999997777665553
No 248
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=80.87 E-value=1.6 Score=33.59 Aligned_cols=41 Identities=10% Similarity=-0.100 Sum_probs=30.4
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
+.+.+.+.++.+=++.|.|.|+.+|..+|...++.+..+..
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~e~~~~l~ 141 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDEELLRFLD 141 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHHHHHHHHh
Confidence 34445555667788999999999999999976665555543
No 249
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=80.65 E-value=3.2 Score=27.90 Aligned_cols=32 Identities=16% Similarity=0.019 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHHhC
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
+.+.+++.+...-.++|.|.|+.++..++...
T Consensus 18 vl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 18 VLKALEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 34444555666678999999999999999764
No 250
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=80.49 E-value=1.7 Score=32.43 Aligned_cols=40 Identities=13% Similarity=-0.013 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccc
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEIC 78 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v 78 (202)
+.--+.+.+.+.++.+-++.|.|.|+.+|..++...++.+
T Consensus 82 ~h~GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~~t~~El 121 (323)
T cd07231 82 FHVGVVRTLVEHQLLPRVIAGSSVGSIVCAIIATRTDEEL 121 (323)
T ss_pred HHHHHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 3334444555556778889999999999999998654433
No 251
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=79.93 E-value=2.5 Score=34.08 Aligned_cols=32 Identities=13% Similarity=0.049 Sum_probs=24.9
Q ss_pred HHHHH-HHhcCCceEEEecChhhHHHHHHHHhC
Q 028885 43 LNDFC-KDVVKDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 43 l~~~~-~~l~~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
+.+++ +..|++|-.++|||+|=..++..|--.
T Consensus 254 La~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 254 LTQLLCDEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHHhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 34555 578899999999999988887776543
No 252
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=77.48 E-value=4.1 Score=29.53 Aligned_cols=37 Identities=14% Similarity=-0.051 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCC-ceEEEecChhhHHHHHHHHhCccc
Q 028885 41 SQLNDFCKDVVKD-QAFFICNSIGGLVGLQAAVMEPEI 77 (202)
Q Consensus 41 ~~l~~~~~~l~~~-~~~lvG~S~Gg~~a~~~a~~~p~~ 77 (202)
.-+.+.+.+.+.. .=.++|.|.|+.++..+++..+.+
T Consensus 14 ~Gvl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 14 AGVLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred HHHHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCcch
Confidence 3344445555665 457999999999999999886554
No 253
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=76.91 E-value=5.7 Score=29.71 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=16.8
Q ss_pred EEEecChhhHHHHHHHHhC
Q 028885 56 FFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~~~ 74 (202)
.+.|.|+||.+|..++..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 4899999999999999754
No 254
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=76.32 E-value=5.5 Score=26.39 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=30.0
Q ss_pred cCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChh
Q 028885 3 LAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIG 63 (202)
Q Consensus 3 L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~G 63 (202)
+.++-.++++|-.|. .++.+++++.+......-..+=+++||-+.|
T Consensus 64 i~~~~~~i~Ld~~Gk---------------~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G 109 (155)
T PF02590_consen 64 IPPNDYVILLDERGK---------------QLSSEEFAKKLERWMNQGKSDIVFIIGGADG 109 (155)
T ss_dssp SHTTSEEEEE-TTSE---------------E--HHHHHHHHHHHHHTTS-EEEEEE-BTTB
T ss_pred ccCCCEEEEEcCCCc---------------cCChHHHHHHHHHHHhcCCceEEEEEecCCC
Confidence 445667888888875 5788888888888765532234778999998
No 255
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=74.78 E-value=5.4 Score=28.38 Aligned_cols=37 Identities=11% Similarity=-0.055 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCC--ceEEEecChhhHHHHHHHHhCc
Q 028885 39 WASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
+.--+.+.+.+.++. .-.++|.|.|+.++..+++..+
T Consensus 13 yh~GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 13 YHLGVLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 444455566666665 3479999999999999998754
No 256
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=74.23 E-value=13 Score=30.16 Aligned_cols=59 Identities=7% Similarity=-0.103 Sum_probs=41.4
Q ss_pred CCCCHHHHHHHHHHHHHHh---c--CCceEEEecChhhHHHHHHHHh--CcccccceeEeccchhh
Q 028885 32 PFYTFETWASQLNDFCKDV---V--KDQAFFICNSIGGLVGLQAAVM--EPEICRGMILLNISLRM 90 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l---~--~~~~~lvG~S~Gg~~a~~~a~~--~p~~v~~lvli~~~~~~ 90 (202)
..+-+.++...+.-+-+.+ | .+++.++|||.||..+..+... ....++++|.+++....
T Consensus 169 gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~~~ 234 (545)
T KOG1516|consen 169 GNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNALS 234 (545)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccccc
Confidence 4566667777666655554 3 3579999999999988776643 22468888888877443
No 257
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=73.21 E-value=6.2 Score=28.90 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=27.5
Q ss_pred ceEEEecChhhHHHHHHH---HhCcccccceeEeccchhh
Q 028885 54 QAFFICNSIGGLVGLQAA---VMEPEICRGMILLNISLRM 90 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a---~~~p~~v~~lvli~~~~~~ 90 (202)
++++.|.|+|+.-+...- ...-+++.++++.+|+...
T Consensus 110 kL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~s 149 (289)
T PF10081_consen 110 KLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFFS 149 (289)
T ss_pred eEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCCC
Confidence 599999999987665533 2233579999999997553
No 258
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=73.10 E-value=13 Score=24.73 Aligned_cols=46 Identities=30% Similarity=0.338 Sum_probs=28.6
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhh
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGG 64 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg 64 (202)
.++-.++++|-+|- .++.+++++.+.+..+.-..+-+++||-+.|=
T Consensus 65 ~~~~~~i~LDe~Gk---------------~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~ 110 (157)
T PRK00103 65 PKGARVIALDERGK---------------QLSSEEFAQELERWRDDGRSDVAFVIGGADGL 110 (157)
T ss_pred CCCCEEEEEcCCCC---------------cCCHHHHHHHHHHHHhcCCccEEEEEcCcccc
Confidence 34445777777764 46777788777765332222346678877763
No 259
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=72.88 E-value=3.1 Score=25.30 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=14.3
Q ss_pred CCcceEEeecCCCCCCCC
Q 028885 184 VKVSFFKLDQIHNMPISS 201 (202)
Q Consensus 184 i~~Pvl~i~G~~D~p~~~ 201 (202)
-+.|+|+|.++.| |+..
T Consensus 33 ~~~piL~l~~~~D-p~TP 49 (103)
T PF08386_consen 33 GAPPILVLGGTHD-PVTP 49 (103)
T ss_pred CCCCEEEEecCcC-CCCc
Confidence 3699999999999 7753
No 260
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=72.23 E-value=3.1 Score=27.78 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=17.1
Q ss_pred ccCCCCCcceEEeecCCCCCC
Q 028885 179 ELLPQVKVSFFKLDQIHNMPI 199 (202)
Q Consensus 179 ~~l~~i~~Pvl~i~G~~D~p~ 199 (202)
+.+..+++|+|+.+|+.| +.
T Consensus 136 ~HL~gl~tPtli~qGtrD-~f 155 (213)
T COG3571 136 EHLTGLKTPTLITQGTRD-EF 155 (213)
T ss_pred hhccCCCCCeEEeecccc-cc
Confidence 366789999999999999 64
No 261
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=72.17 E-value=9.6 Score=21.85 Aligned_cols=24 Identities=17% Similarity=0.011 Sum_probs=18.8
Q ss_pred cCCceEEEecChhhHHHHHHHHhC
Q 028885 51 VKDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
+.+++.++|-|.|=.+|.+.++.+
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHH
T ss_pred CCceEEEEecCCcccHHHHHHHHh
Confidence 346899999999999998888765
No 262
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=72.07 E-value=12 Score=28.07 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=53.3
Q ss_pred eEEEeccC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh-------cCCceEEEecChhhHHHHHHHHhCcc---
Q 028885 8 RVYSIDLI-GYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDV-------VKDQAFFICNSIGGLVGLQAAVMEPE--- 76 (202)
Q Consensus 8 ~v~~~D~~-G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-------~~~~~~lvG~S~Gg~~a~~~a~~~p~--- 76 (202)
.++-+|-| |.|.|...... -..-+.+..+.|+..+++.+ .-.|++|+..|.||-++..++..--+
T Consensus 73 dllfvDnPVGaGfSyVdg~~----~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l~~aIk 148 (414)
T KOG1283|consen 73 DLLFVDNPVGAGFSYVDGSS----AYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALELDDAIK 148 (414)
T ss_pred cEEEecCCCcCceeeecCcc----cccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhHHHHHh
Confidence 34555544 77888776532 12335677888998888865 23589999999999999988865433
Q ss_pred ------cccceeEeccchhh
Q 028885 77 ------ICRGMILLNISLRM 90 (202)
Q Consensus 77 ------~v~~lvli~~~~~~ 90 (202)
.+.+++|=++-+++
T Consensus 149 ~G~i~~nf~~VaLGDSWISP 168 (414)
T KOG1283|consen 149 RGEIKLNFIGVALGDSWISP 168 (414)
T ss_pred cCceeecceeEEccCcccCh
Confidence 25566666655443
No 263
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=71.91 E-value=1.2 Score=36.09 Aligned_cols=55 Identities=13% Similarity=0.191 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHHH--------HhcCCceEEEecChhhHHHHHHHHhCc-ccccceeEeccchh
Q 028885 35 TFETWASQLNDFCK--------DVVKDQAFFICNSIGGLVGLQAAVMEP-EICRGMILLNISLR 89 (202)
Q Consensus 35 ~~~~~~~~l~~~~~--------~l~~~~~~lvG~S~Gg~~a~~~a~~~p-~~v~~lvli~~~~~ 89 (202)
++..-++.+..|.+ ++...+++|+|.|||+.++........ ..|+++|-|+-+..
T Consensus 224 nI~h~ae~~vSf~r~kvlei~gefpha~IiLvGrsmGAlVachVSpsnsdv~V~~vVCigypl~ 287 (784)
T KOG3253|consen 224 NIKHAAEYSVSFDRYKVLEITGEFPHAPIILVGRSMGALVACHVSPSNSDVEVDAVVCIGYPLD 287 (784)
T ss_pred chHHHHHHHHHHhhhhhhhhhccCCCCceEEEecccCceeeEEeccccCCceEEEEEEeccccc
Confidence 44444555555544 233468999999999998888776643 34888888876544
No 264
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=71.62 E-value=5.9 Score=20.37 Aligned_cols=29 Identities=17% Similarity=0.295 Sum_probs=25.3
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEec
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICN 60 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~ 60 (202)
..+..+.|..|+...+.++.+..+.++|-
T Consensus 4 ~~w~PqSWM~DLrS~I~~~~I~ql~ipGs 32 (51)
T PF03490_consen 4 TAWHPQSWMSDLRSSIGEMAITQLFIPGS 32 (51)
T ss_pred cccCcHHHHHHHHHHHhcceeeeEEeccc
Confidence 45788999999999999999999998874
No 265
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=70.52 E-value=0.72 Score=37.08 Aligned_cols=86 Identities=15% Similarity=0.038 Sum_probs=57.5
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc------CCceEEEecChhhHHHHHHHHhCc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV------KDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~------~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
.|+++..-+.-++||-|+=.+.--+.. ..-+.....+|..++.+.|. .+++-+-|-|-||.+.-....++|
T Consensus 446 WLerGg~~v~ANIRGGGEfGp~WH~Aa---~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrP 522 (648)
T COG1505 446 WLERGGVFVLANIRGGGEFGPEWHQAG---MKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRP 522 (648)
T ss_pred HHhcCCeEEEEecccCCccCHHHHHHH---hhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccCh
Confidence 366777778889998876543210000 01122334455555555553 246889999999999999999999
Q ss_pred ccccceeEeccchhh
Q 028885 76 EICRGMILLNISLRM 90 (202)
Q Consensus 76 ~~v~~lvli~~~~~~ 90 (202)
|.+.++|.--|....
T Consensus 523 elfgA~v~evPllDM 537 (648)
T COG1505 523 ELFGAAVCEVPLLDM 537 (648)
T ss_pred hhhCceeeccchhhh
Confidence 999888887776553
No 266
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=70.46 E-value=6.8 Score=29.07 Aligned_cols=35 Identities=11% Similarity=-0.049 Sum_probs=25.5
Q ss_pred HHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
-+.+.+.+.++.+-++.|.|.|+.++..++....+
T Consensus 86 Gvl~aL~e~~l~~~~i~GtSaGAi~aa~~~~~~~~ 120 (298)
T cd07206 86 GVVKALWEQDLLPRVISGSSAGAIVAALLGTHTDE 120 (298)
T ss_pred HHHHHHHHcCCCCCEEEEEcHHHHHHHHHHcCCcH
Confidence 33344444556677899999999999999976443
No 267
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=70.10 E-value=8.1 Score=27.73 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=25.3
Q ss_pred HHHHHHHHHhcCC--c--eEEEecChhhHHHHHHHHhCc
Q 028885 41 SQLNDFCKDVVKD--Q--AFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 41 ~~l~~~~~~l~~~--~--~~lvG~S~Gg~~a~~~a~~~p 75 (202)
--+.+.+.+.++. + -.++|.|.|+.++..++...+
T Consensus 15 ~GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 15 VGVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred HHHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCC
Confidence 3444555555543 2 389999999999999998764
No 268
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=69.29 E-value=6 Score=28.45 Aligned_cols=37 Identities=22% Similarity=0.111 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCC---ce-EEEecChhhHHHHHHHHhCccccc
Q 028885 42 QLNDFCKDVVKD---QA-FFICNSIGGLVGLQAAVMEPEICR 79 (202)
Q Consensus 42 ~l~~~~~~l~~~---~~-~lvG~S~Gg~~a~~~a~~~p~~v~ 79 (202)
-+.+.+.+.+.. ++ .++|.|.|+.++..++. .|+++.
T Consensus 16 GVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~-~~~~~~ 56 (246)
T cd07222 16 GAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT-APEKIE 56 (246)
T ss_pred HHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc-ChHHHH
Confidence 344455555543 34 79999999999999994 354443
No 269
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=67.53 E-value=10 Score=27.33 Aligned_cols=34 Identities=15% Similarity=-0.059 Sum_probs=23.8
Q ss_pred HHHHHHHHhcC--CceEEEecChhhHHHHHHHHhCc
Q 028885 42 QLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 42 ~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
-+.+.+.+.+. ..-.+.|-|.|+.++..++...+
T Consensus 17 GVl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 17 GVAVCLKKYAPHLLLNKISGASAGALAACCLLCDLP 52 (245)
T ss_pred HHHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCc
Confidence 34444555542 23349999999999999998754
No 270
>COG0218 Predicted GTPase [General function prediction only]
Probab=67.22 E-value=7.2 Score=27.01 Aligned_cols=32 Identities=28% Similarity=0.687 Sum_probs=21.9
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 028885 9 VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD 49 (202)
Q Consensus 9 v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 49 (202)
...+|+||+|....+. --.+.|.+.+.++++.
T Consensus 72 ~~lVDlPGYGyAkv~k---------~~~e~w~~~i~~YL~~ 103 (200)
T COG0218 72 LRLVDLPGYGYAKVPK---------EVKEKWKKLIEEYLEK 103 (200)
T ss_pred EEEEeCCCcccccCCH---------HHHHHHHHHHHHHHhh
Confidence 6789999999987755 2445555555555543
No 271
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=65.07 E-value=4.4 Score=28.60 Aligned_cols=19 Identities=16% Similarity=0.067 Sum_probs=16.9
Q ss_pred cccCCCCCcceEEeecCCC
Q 028885 178 EELLPQVKVSFFKLDQIHN 196 (202)
Q Consensus 178 ~~~l~~i~~Pvl~i~G~~D 196 (202)
.+.+..++||+|++.|+.|
T Consensus 157 ~~D~~~vk~Pilfl~ae~D 175 (242)
T KOG3043|consen 157 SADIANVKAPILFLFAELD 175 (242)
T ss_pred hhHHhcCCCCEEEEeeccc
Confidence 4567889999999999999
No 272
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.62 E-value=44 Score=23.12 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=42.7
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc--ccccee
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--ICRGMI 82 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lv 82 (202)
+++.++.+|-+|.. ..-....+.+.++++......+++|=-+..+.-.+..+..+-+ .+.++|
T Consensus 82 ~~~D~vlIDT~Gr~---------------~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lI 146 (196)
T PF00448_consen 82 KGYDLVLIDTAGRS---------------PRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLI 146 (196)
T ss_dssp TTSSEEEEEE-SSS---------------STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEE
T ss_pred cCCCEEEEecCCcc---------------hhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEE
Confidence 45889999999873 2345677788888888876677766555555555554444322 378888
Q ss_pred Eec
Q 028885 83 LLN 85 (202)
Q Consensus 83 li~ 85 (202)
+.-
T Consensus 147 lTK 149 (196)
T PF00448_consen 147 LTK 149 (196)
T ss_dssp EES
T ss_pred EEe
Confidence 753
No 273
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=64.44 E-value=13 Score=26.96 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.0
Q ss_pred ceEEEecChhhHHHHHHHHhCc
Q 028885 54 QAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
.-.++|.|.|+.++..+++..+
T Consensus 33 ~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 33 ARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CCEEEEEcHHHHHHHHHHhCCC
Confidence 3469999999999999998765
No 274
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=63.23 E-value=9.6 Score=30.28 Aligned_cols=49 Identities=12% Similarity=-0.008 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCC--ceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 37 ETWASQLNDFCKDVVKD--QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~--~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
+.+.+-+.+.++.|+.+ +++|-|-|||..=|+.+++... -+++|+--|.
T Consensus 339 ~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~--P~AIiVgKPL 389 (511)
T TIGR03712 339 QGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLS--PHAIIVGKPL 389 (511)
T ss_pred HHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCC--CceEEEcCcc
Confidence 34556666777888864 6999999999999999998742 2344444443
No 275
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=63.15 E-value=13 Score=26.91 Aligned_cols=36 Identities=8% Similarity=-0.124 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCC----ceEEEecChhhHHHHHHHHhCc
Q 028885 40 ASQLNDFCKDVVKD----QAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 40 ~~~l~~~~~~l~~~----~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
.--+.+.+.+.++. .-.++|-|.|+.++..+++..+
T Consensus 19 h~GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 19 HVGVASCLLEHAPFLVANARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred HHHHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCC
Confidence 33344444444433 3558999999999999998764
No 276
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=63.00 E-value=9.6 Score=27.62 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=12.2
Q ss_pred CCceEEEecChhhHH
Q 028885 52 KDQAFFICNSIGGLV 66 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~ 66 (202)
...++++|||+|..=
T Consensus 234 i~~I~i~GhSl~~~D 248 (270)
T PF14253_consen 234 IDEIIIYGHSLGEVD 248 (270)
T ss_pred CCEEEEEeCCCchhh
Confidence 367999999999753
No 277
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=62.60 E-value=11 Score=27.80 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=17.0
Q ss_pred EEEecChhhHHHHHHHHhC
Q 028885 56 FFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~~~ 74 (202)
.++|.|.||.+|+.++..+
T Consensus 37 ~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 37 LFAGTSAGSLIALGLALGY 55 (288)
T ss_pred EEEEeCHHHHHHHHHHcCc
Confidence 5899999999999998765
No 278
>PLN02777 photosystem I P subunit (PSI-P)
Probab=62.20 E-value=24 Score=23.53 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEecc
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
...+++.+++.+..+... ++..++|.-.||.+++....--=+.|+++=++.+
T Consensus 74 ~~~~ei~k~~~e~Wd~~E-dK~av~~l~~aaiVal~v~~~VL~AId~lPLlP~ 125 (167)
T PLN02777 74 TELPEIVKTVQEAWDKVE-DKYAVSSLAFAGVVALWGSAGMISAIDRLPLVPG 125 (167)
T ss_pred ccHHHHHHHHHHHHhhhc-chhHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 455778888888887775 5777889999999999866543334444444444
No 279
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=61.82 E-value=16 Score=24.09 Aligned_cols=29 Identities=10% Similarity=-0.060 Sum_probs=21.3
Q ss_pred HHHHHHHhcC--CceEEEecChhhHHHHHHH
Q 028885 43 LNDFCKDVVK--DQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 43 l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a 71 (202)
+.+.+++.+. ..-.+.|.|.|+.++..++
T Consensus 16 vl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 16 VLSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 3344444444 5567899999999999999
No 280
>COG3621 Patatin [General function prediction only]
Probab=59.01 E-value=37 Score=25.78 Aligned_cols=57 Identities=19% Similarity=0.144 Sum_probs=37.4
Q ss_pred CcCCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCc----eE-EEecChhhHHHHHHHHhCcc
Q 028885 2 VLAKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQ----AF-FICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 2 ~L~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~----~~-lvG~S~Gg~~a~~~a~~~p~ 76 (202)
++...|++..+|--|.- ..+...+...+++....+ ++ +-|.|.||.+++.+|.-.+.
T Consensus 4 ~~msk~rIlsldGGGvr------------------G~i~lE~lr~ieqiqGkkl~e~FDl~~GTSiGgilal~La~~ks~ 65 (394)
T COG3621 4 HLMSKYRILSLDGGGVR------------------GAILLEKLRIIEQIQGKKLCEYFDLIGGTSIGGILALGLALGKSP 65 (394)
T ss_pred ccccceeEEEecCCccc------------------cHHHHHHHHHHHHHhCCcceeeEeeecCccHHHHHHHHHhcCCCC
Confidence 34456777777755441 145556666777754332 44 57999999999999986554
No 281
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=58.09 E-value=15 Score=27.41 Aligned_cols=17 Identities=12% Similarity=0.317 Sum_probs=15.4
Q ss_pred EEEecChhhHHHHHHHH
Q 028885 56 FFICNSIGGLVGLQAAV 72 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~ 72 (202)
.++|.|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 48999999999999986
No 282
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=56.60 E-value=52 Score=22.21 Aligned_cols=42 Identities=17% Similarity=0.106 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecCh-hhHHHHHHHHhC
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSI-GGLVGLQAAVME 74 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~-Gg~~a~~~a~~~ 74 (202)
..++.+.+++.+.+++++.+ -.++|+|++. |+-++.++|.+-
T Consensus 72 ~~~~~~~~a~~l~~~i~~~~-p~~Vl~g~t~~g~~la~rlA~~L 114 (181)
T cd01985 72 AGYDPEATAKALAALIKKEK-PDLILAGATSIGKQLAPRVAALL 114 (181)
T ss_pred cCCChHHHHHHHHHHHHHhC-CCEEEECCcccccCHHHHHHHHh
Confidence 45788999999999998876 4677777765 778888888763
No 283
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=56.24 E-value=31 Score=22.88 Aligned_cols=43 Identities=23% Similarity=0.285 Sum_probs=27.0
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhH
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGL 65 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~ 65 (202)
-.|++.|-+|- .++.+++++.+.+..+.- .+-+++||-+.|=.
T Consensus 66 ~~~i~LDe~Gk---------------~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~~ 108 (153)
T TIGR00246 66 AHVVTLDIPGK---------------PWTTPQLADTLEKWKTDG-RDVTLLIGGPEGLS 108 (153)
T ss_pred CeEEEEcCCCC---------------cCCHHHHHHHHHHHhccC-CeEEEEEcCCCcCC
Confidence 34667776664 467777887777764332 23466788777643
No 284
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=55.51 E-value=11 Score=28.74 Aligned_cols=18 Identities=22% Similarity=0.231 Sum_probs=16.1
Q ss_pred EEEecChhhHHHHHHHHh
Q 028885 56 FFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~~ 73 (202)
.+.|.|.||.+|+.++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 579999999999999864
No 285
>PF06833 MdcE: Malonate decarboxylase gamma subunit (MdcE); InterPro: IPR009648 This family consists of several bacterial malonate decarboxylase gamma subunit proteins. Malonate decarboxylase of Klebsiella pneumoniae consists of four different subunits and catalyses the conversion of malonate plus H+ to acetate and CO2. The catalysis proceeds via acetyl and malonyl thioester residues with the phosphribosyl-dephospho-CoA prosthetic group of the acyl carrier protein (ACP) subunit. MdcD and E together probably function as malonyl-S-ACP decarboxylase []. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. In the malonate decarboxylase complex, the beta subunit appears to act as a malonyl-CoA decarboxylase, while the gamma subunit appears either to mediate subunit interaction or to act as a co-decarboxylase with the beta subunit. The beta and gamma subunits exhibit some local sequence similarity.
Probab=55.20 E-value=41 Score=24.08 Aligned_cols=58 Identities=9% Similarity=0.118 Sum_probs=35.0
Q ss_pred eEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH--hcCCceE--EEecCh-hhHHHHHHHHh
Q 028885 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD--VVKDQAF--FICNSI-GGLVGLQAAVM 73 (202)
Q Consensus 8 ~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~~--lvG~S~-Gg~~a~~~a~~ 73 (202)
=|+.+|-+|+..+.... .+-+......+..-+.. +..-|++ ++|++| ||.++.-+.++
T Consensus 67 Iv~lVD~~sQa~grreE--------llGi~~alAhla~a~a~AR~~GHpvI~Lv~G~A~SGaFLA~GlqA~ 129 (234)
T PF06833_consen 67 IVALVDVPSQAYGRREE--------LLGINQALAHLAKAYALARLAGHPVIGLVYGKAMSGAFLAHGLQAN 129 (234)
T ss_pred EEEEEeCCccccchHHH--------HhhHHHHHHHHHHHHHHHHHcCCCeEEEEecccccHHHHHHHHHhc
Confidence 36778999988776633 34444444444443332 2234654 799999 55666666665
No 286
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=54.33 E-value=10 Score=30.20 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
.++.-+.--+.+-+=..+.=|=++.|-|+||.+|..++.+.-+-++.+.-
T Consensus 183 ~tFGlfH~GVlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~eEl~~Ll~ 232 (543)
T KOG2214|consen 183 ATFGLFHIGVLRTLLEQDLLPNIISGSSAGAIVASLVGVRSNEELKQLLT 232 (543)
T ss_pred chhhhhHHHHHHHHHHccccchhhcCCchhHHHHHHHhhcchHHHHHHhc
Confidence 34555554454444445556889999999999999999988776666543
No 287
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=54.11 E-value=49 Score=22.08 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecCh-hhHHHHHHHHhC
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNSI-GGLVGLQAAVME 74 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~-Gg~~a~~~a~~~ 74 (202)
.++.+.+++.+.+++++.+ -.++|+|+|. |.-++.++|.+-
T Consensus 65 ~~~~~~~a~al~~~i~~~~-p~~Vl~~~t~~g~~la~rlAa~L 106 (168)
T cd01715 65 HYLAEPYAPALVALAKKEK-PSHILAGATSFGKDLAPRVAAKL 106 (168)
T ss_pred ccChHHHHHHHHHHHHhcC-CCEEEECCCccccchHHHHHHHh
Confidence 4678999999999998876 4677777765 778888888764
No 288
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=53.61 E-value=8.9 Score=27.04 Aligned_cols=21 Identities=0% Similarity=-0.066 Sum_probs=16.9
Q ss_pred cCCCCCcceEEeecCCCCCCC
Q 028885 180 LLPQVKVSFFKLDQIHNMPIS 200 (202)
Q Consensus 180 ~l~~i~~Pvl~i~G~~D~p~~ 200 (202)
..+.|+||.|.|.|+.|..++
T Consensus 158 ~~~~i~~PSLHi~G~~D~iv~ 178 (230)
T KOG2551|consen 158 YKRPLSTPSLHIFGETDTIVP 178 (230)
T ss_pred hccCCCCCeeEEecccceeec
Confidence 345799999999999995544
No 289
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=51.69 E-value=51 Score=24.83 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecCh-hhHHHHHHHHhC
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSI-GGLVGLQAAVME 74 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~-Gg~~a~~~a~~~ 74 (202)
|+.+.+++.+.+++++.+...++|+|+|. |--++-++|++-
T Consensus 62 ~~~e~~~~al~~~i~~~~p~~~vl~~~T~~Gr~laprlAa~l 103 (313)
T PRK03363 62 RMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRL 103 (313)
T ss_pred cChHHHHHHHHHHHHhhCCCcEEEEcCCccHHHHHHHHHHHh
Confidence 78899999999998887544588998887 667888888763
No 290
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=51.36 E-value=63 Score=24.06 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHH-hCcc---cccceeEeccch
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV-MEPE---ICRGMILLNISL 88 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~-~~p~---~v~~lvli~~~~ 88 (202)
+.-++.+.+.+++.. +++.++ +.|.+.-+..|. .+|+ +|+.++++++..
T Consensus 99 ~~a~~~i~~~~~~~~-~evtiv--a~GPLTNlA~al~~~P~~~~~ik~iviMGG~~ 151 (302)
T cd02651 99 IHAVDAIIDTLRASP-EPITLV--ATGPLTNIALLLRKYPELAERIKEIVLMGGAL 151 (302)
T ss_pred CcHHHHHHHHHHhCC-CCEEEE--EcCchHHHHHHHHHChhhHhhcCEEEEecCCc
Confidence 344556666666554 478888 667766666555 3676 799999999875
No 291
>PRK04148 hypothetical protein; Provisional
Probab=51.17 E-value=28 Score=22.48 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
+++.+.+.+......++..||...|..++..++... ..++.++..
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G----~~ViaIDi~ 48 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG----FDVIVIDIN 48 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC----CEEEEEECC
Confidence 444444433333335699999998888888888542 356667664
No 292
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=50.46 E-value=26 Score=26.28 Aligned_cols=22 Identities=27% Similarity=0.246 Sum_probs=17.9
Q ss_pred cCCceEEEecChhhHHHHHHHH
Q 028885 51 VKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
+.++..+.|||+|=+-|+..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4678899999999888777664
No 293
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=50.27 E-value=29 Score=21.63 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=24.5
Q ss_pred ceEEEe-cChhhHHHHHHHHhCcccccceeEecc
Q 028885 54 QAFFIC-NSIGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 54 ~~~lvG-~S~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
++.|+| ..+.|...+++...||+ ++-+.+.+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~~~~ 33 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVALVSS 33 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEEEES
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEeeee
Confidence 467899 89999999999999987 655554444
No 294
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=50.26 E-value=18 Score=24.14 Aligned_cols=23 Identities=17% Similarity=0.011 Sum_probs=17.8
Q ss_pred CCceEEEecChhhHHHHHHHHhC
Q 028885 52 KDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
...-.+.|.|.||.+++.++...
T Consensus 26 ~~~d~i~GtS~Gal~a~~~~~~~ 48 (204)
T PF01734_consen 26 ERFDVISGTSAGALNAALLALGY 48 (204)
T ss_dssp CT-SEEEEECCHHHHHHHHHTC-
T ss_pred CCccEEEEcChhhhhHHHHHhCC
Confidence 34567999999999998888763
No 295
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=49.80 E-value=56 Score=24.22 Aligned_cols=51 Identities=22% Similarity=0.140 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHhcCCc---eEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 37 ETWASQLNDFCKDVVKDQ---AFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~---~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
+....-+..+++.++.++ +.=||.+||++. ..+|.++..+|-|+.+.....
T Consensus 55 eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~-~~aA~~y~v~V~GvTlS~~Q~ 108 (283)
T COG2230 55 EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLA-IYAAEEYGVTVVGVTLSEEQL 108 (283)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHH-HHHHHHcCCEEEEeeCCHHHH
Confidence 445556777777777643 445999999865 456666777788888776553
No 296
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=49.72 E-value=20 Score=35.22 Aligned_cols=29 Identities=21% Similarity=0.116 Sum_probs=23.8
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
+.++++++|+++-.++|||+|=..|+..+
T Consensus 664 l~~lL~~~Gi~Pd~v~GHSlGE~aAa~aA 692 (2582)
T TIGR02813 664 QYKLFTQAGFKADMTAGHSFGELSALCAA 692 (2582)
T ss_pred HHHHHHHcCCccceeecCCHHHHHHHHHh
Confidence 44567788899999999999998887765
No 297
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=49.56 E-value=76 Score=24.44 Aligned_cols=42 Identities=17% Similarity=0.033 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecCh-hhHHHHHHHHhC
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSI-GGLVGLQAAVME 74 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~-Gg~~a~~~a~~~ 74 (202)
..|+.+.+++.+.+++++.+ -.++|+|++. |--++-++|.+-
T Consensus 98 ~~y~~e~~a~al~~li~~~~-P~~vL~~~T~~GrdlApRlAarL 140 (356)
T PLN00022 98 THPLAEPWAKLVVLAQQKGG-YSHILAASTSFGKNVLPRAAALL 140 (356)
T ss_pred cccChHHHHHHHHHHHHhcC-CCEEEECCCCchhHHHHHHHHHh
Confidence 45789999999999999887 4677777776 668888888763
No 298
>PF03283 PAE: Pectinacetylesterase
Probab=49.53 E-value=48 Score=25.53 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=23.9
Q ss_pred CceEEEecChhhHHHHHHHH----hCcccccceeEeccc
Q 028885 53 DQAFFICNSIGGLVGLQAAV----MEPEICRGMILLNIS 87 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~----~~p~~v~~lvli~~~ 87 (202)
++++|.|.|.||.-++..+- ..|..++-..+.+..
T Consensus 156 ~~vlltG~SAGG~g~~~~~d~~~~~lp~~~~v~~~~DsG 194 (361)
T PF03283_consen 156 KQVLLTGCSAGGLGAILHADYVRDRLPSSVKVKCLSDSG 194 (361)
T ss_pred ceEEEeccChHHHHHHHHHHHHHHHhccCceEEEecccc
Confidence 67999999999988877553 455544444444544
No 299
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=49.30 E-value=76 Score=21.20 Aligned_cols=36 Identities=8% Similarity=-0.139 Sum_probs=21.0
Q ss_pred CCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 52 KDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
.+++.+.|-|..|...+.++-..++.|..+|=.+|.
T Consensus 68 gk~I~~yGA~~kg~tlln~~g~~~~~I~~vvD~np~ 103 (160)
T PF08484_consen 68 GKRIAGYGAGAKGNTLLNYFGLDNDLIDYVVDDNPL 103 (160)
T ss_dssp T--EEEE---SHHHHHHHHHT--TTTS--EEES-GG
T ss_pred CCEEEEECcchHHHHHHHHhCCCcceeEEEEeCChh
Confidence 357999999999999898887777777777766664
No 300
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=48.16 E-value=27 Score=26.84 Aligned_cols=69 Identities=16% Similarity=0.045 Sum_probs=52.4
Q ss_pred eccCCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccccccee
Q 028885 12 IDLIGYGYSDKPNPRDFF-------DKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMI 82 (202)
Q Consensus 12 ~D~~G~G~S~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lv 82 (202)
+.+|||+..+...++.|. ...-|+..++++-+.-+++..++.+. -|-|-=|--|..+.+..|.+++++-
T Consensus 288 i~MPa~~m~dg~d~~lF~~fsavaqr~GVYt~~dy~dIl~~lv~~W~v~~l--~gLs~eg~kArd~l~~l~~rirr~~ 363 (390)
T PLN00179 288 ITMPAHLMYDGRDDNLFDHFSAVAQRLGVYTAKDYADILEHLVRRWKVEEL--TGLSGEGRRAQDYVCGLPPRIRRLE 363 (390)
T ss_pred CCCCcccCCCCCcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHhhcCcCcc--cCCCHHHHHHHHHHHHhHHHHHHHH
Confidence 678899888754432221 12568999999777788888887766 5889999999999999999888764
No 301
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=47.97 E-value=22 Score=26.97 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=14.3
Q ss_pred eEEEecChhhHHHHHHHH
Q 028885 55 AFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 55 ~~lvG~S~Gg~~a~~~a~ 72 (202)
-.++|||+|=..|+..+-
T Consensus 126 ~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 126 DVCAGLSLGEYTALVFAG 143 (343)
T ss_pred CeeeeccHHHHHHHHHhC
Confidence 357999999988877663
No 302
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=47.96 E-value=63 Score=26.71 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=26.8
Q ss_pred CCceEEEec------ChhhHHHHHHHHhCcccccceeEeccc
Q 028885 52 KDQAFFICN------SIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 52 ~~~~~lvG~------S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
.++|+++|| +.|+.+++..-+..-.+ .+.++++|.
T Consensus 337 ~d~VfImGHk~pDmDalGsAig~~~~A~~~~~-~a~~v~dp~ 377 (655)
T COG3887 337 SDNVFIMGHKFPDMDALGSAIGMQKFASMNNK-EAFAVLDPE 377 (655)
T ss_pred cCcEEEEccCCCChHHHHHHHHHHHHHHhccc-ccEEEECcc
Confidence 579999999 67999998855554444 678888875
No 303
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=46.45 E-value=27 Score=29.68 Aligned_cols=22 Identities=23% Similarity=0.216 Sum_probs=18.3
Q ss_pred cCCceEEEecChhhHHHHHHHH
Q 028885 51 VKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
+..--++.|.|+||.++..+|+
T Consensus 64 ~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 64 RVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred CCCCceEEeeCHHHHHHHHHHc
Confidence 4445578999999999999997
No 304
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=46.14 E-value=1.1e+02 Score=22.53 Aligned_cols=26 Identities=23% Similarity=0.218 Sum_probs=20.5
Q ss_pred HHhc-CCceEEEecChhhHHHHHHHHh
Q 028885 48 KDVV-KDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 48 ~~l~-~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
+... .+.+.++|.|-|+..|-.++..
T Consensus 86 ~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 86 KNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred hccCCcceEEEEecCccHHHHHHHHHH
Confidence 4443 3568999999999999988855
No 305
>PRK12467 peptide synthase; Provisional
Probab=45.52 E-value=84 Score=32.81 Aligned_cols=73 Identities=16% Similarity=0.036 Sum_probs=46.0
Q ss_pred CCcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhc-CCceEEEecChhhHHHHHHHHh---Cccccc
Q 028885 4 AKSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVM---EPEICR 79 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~---~p~~v~ 79 (202)
..+..++.+..++.-.-.. ...+++.++....+.+.... ..+..+.|+|+||.++.+++.. .-+.+.
T Consensus 3716 ~~~~~~~~l~~~~~~~d~~---------~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~~~a~~~~~~l~~~g~~~~ 3786 (3956)
T PRK12467 3716 EGDRHVLGLTCRHLLDDGW---------QDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGGTLARLVAELLEREGESEA 3786 (3956)
T ss_pred CCCCcEEEEeccccccccC---------CccchHHHHHHHHHHHHHhccCCCeeeeeeecchHHHHHHHHHHHHcCCcee
Confidence 3456677776665422211 23466666666666665543 4589999999999999998865 334455
Q ss_pred ceeEec
Q 028885 80 GMILLN 85 (202)
Q Consensus 80 ~lvli~ 85 (202)
-+.++.
T Consensus 3787 ~~~~~~ 3792 (3956)
T PRK12467 3787 FLGLFD 3792 (3956)
T ss_pred EEEEEe
Confidence 555553
No 306
>PRK14974 cell division protein FtsY; Provisional
Probab=45.21 E-value=1.2e+02 Score=23.21 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=43.6
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCc--cccccee
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEP--EICRGMI 82 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p--~~v~~lv 82 (202)
.++.++.+|-.|... +-..+.+.+..+.+......+++|.-++-|.-+..-+..+. -.+.++|
T Consensus 221 ~~~DvVLIDTaGr~~---------------~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giI 285 (336)
T PRK14974 221 RGIDVVLIDTAGRMH---------------TDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVI 285 (336)
T ss_pred CCCCEEEEECCCccC---------------CcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEE
Confidence 467899999887743 22345566677776666667778877777766666665443 2477777
Q ss_pred Eec
Q 028885 83 LLN 85 (202)
Q Consensus 83 li~ 85 (202)
+.-
T Consensus 286 lTK 288 (336)
T PRK14974 286 LTK 288 (336)
T ss_pred Eee
Confidence 764
No 307
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=44.28 E-value=46 Score=24.04 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=16.3
Q ss_pred EEEecChhhHHHHHHHHh
Q 028885 56 FFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~~ 73 (202)
.++|.|.||.+++.++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 379999999999999986
No 308
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=43.63 E-value=52 Score=26.63 Aligned_cols=41 Identities=20% Similarity=0.180 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHH-HHHhcCCceEEEec-ChhhHHHHHHHHh
Q 028885 33 FYTFETWASQLNDF-CKDVVKDQAFFICN-SIGGLVGLQAAVM 73 (202)
Q Consensus 33 ~~~~~~~~~~l~~~-~~~l~~~~~~lvG~-S~Gg~~a~~~a~~ 73 (202)
..-++++++|+... ++.++..|-.++|| |=||.+|..++.+
T Consensus 380 WPyLe~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~ 422 (550)
T PF00862_consen 380 WPYLEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRK 422 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhh
Confidence 34678899888654 56677788888887 5577887777755
No 309
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=43.18 E-value=33 Score=23.56 Aligned_cols=28 Identities=7% Similarity=-0.090 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEEecCh
Q 028885 35 TFETWASQLNDFCKDVVKDQAFFICNSI 62 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~~lvG~S~ 62 (202)
..+.++..+..++++.++..-.|+||+-
T Consensus 131 Q~~aL~~L~~~L~~~y~i~~~~IvGH~d 158 (185)
T PRK11789 131 QYQALAALTRALRAAYPIIAERITGHSD 158 (185)
T ss_pred HHHHHHHHHHHHHHHcCCCHHhEEehhh
Confidence 3444555555666666665578999974
No 310
>cd01311 PDC_hydrolase 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.
Probab=43.14 E-value=1.3e+02 Score=21.84 Aligned_cols=47 Identities=19% Similarity=0.142 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhcCCceEEEecChhhH---HHHHHHHhCcccccceeEeccc
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIGGL---VGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~Gg~---~a~~~a~~~p~~v~~lvli~~~ 87 (202)
.+++.+.++..+++..+++.-|..+. ..+..+. .++++.+++.++|.
T Consensus 30 ~e~l~~~m~~~gV~~aV~vq~~~~~~~n~~~~~~~~-~~~r~~g~~~~~p~ 79 (263)
T cd01311 30 IDDLRALRSTLGIDRVVIVQASIYGADNSNLLDALA-SNGKARGGATVDPR 79 (263)
T ss_pred HHHHHHHHHHhCCCcEEEeCccccCCchHHHHHHHh-hCCCeEEEEEECCC
Confidence 55566667788999999888664332 1222223 45888898888753
No 311
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=42.71 E-value=44 Score=22.84 Aligned_cols=32 Identities=13% Similarity=-0.109 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
...++=.+..|+.+.++++|||--|.+...+.
T Consensus 68 ~asleyAv~~L~v~~IvV~GHs~CGav~a~~~ 99 (182)
T cd00883 68 LSVLQYAVDVLKVKHIIVCGHYGCGGVKAALT 99 (182)
T ss_pred hhhHHHHHHhcCCCEEEEecCCCchHHHHHHc
Confidence 34444456688999999999999777766553
No 312
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=42.64 E-value=38 Score=26.28 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCC----ceEEEecChhhHHHHHHHHh
Q 028885 42 QLNDFCKDVVKD----QAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 42 ~l~~~~~~l~~~----~~~lvG~S~Gg~~a~~~a~~ 73 (202)
-+.+.+.+.+.+ .-.++|.|.|+.++..++..
T Consensus 29 GVl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG 64 (382)
T cd07219 29 GVVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCG 64 (382)
T ss_pred HHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhC
Confidence 344444444432 23499999999999999986
No 313
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=42.52 E-value=69 Score=25.96 Aligned_cols=50 Identities=12% Similarity=-0.001 Sum_probs=30.2
Q ss_pred HHHHHHHHHhcC--CceEEEecChhhHHHHH-HHH-hCcccccceeEeccchhh
Q 028885 41 SQLNDFCKDVVK--DQAFFICNSIGGLVGLQ-AAV-MEPEICRGMILLNISLRM 90 (202)
Q Consensus 41 ~~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~-~a~-~~p~~v~~lvli~~~~~~ 90 (202)
..+.+-+...|. ..+.|+|.|.|+.-... +.+ ..-..++..|+-++....
T Consensus 204 ~WV~~Ni~aFGGnp~~vTLFGESAGaASv~aHLlsP~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 204 QWVQENIAAFGGNPSRVTLFGESAGAASVVAHLLSPGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred HHHHHhHHHhCCCcceEEEeccccchhhhhheecCCCchhhHHHHHhhcCCCCC
Confidence 344444555664 46999999999853332 211 112358888888876543
No 314
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=42.36 E-value=34 Score=25.06 Aligned_cols=32 Identities=16% Similarity=0.021 Sum_probs=24.8
Q ss_pred CCceE-EEecChhhHHHHHHHHhCcccccceeE
Q 028885 52 KDQAF-FICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 52 ~~~~~-lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
..+++ ++|.|+|+.-+..+.+..+.+-++++.
T Consensus 38 ~~~f~~~~GvSAGA~n~~aYls~Q~gra~~~~~ 70 (292)
T COG4667 38 FNPFDLVVGVSAGALNLVAYLSKQRGRARRVIV 70 (292)
T ss_pred cCCcCeeeeecHhHHhHHHHhhcCCchHHHHHH
Confidence 34665 799999999999999988876555443
No 315
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=42.23 E-value=1.3e+02 Score=23.94 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=42.4
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc--ccccee
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE--ICRGMI 82 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lv 82 (202)
.+|.++.+|-+|.-. .-+.+.+.+..+.+......+++|--++-|.-+...+..+-+ .+.++|
T Consensus 181 ~~~DvViIDTaGr~~---------------~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~I 245 (429)
T TIGR01425 181 ENFDIIIVDTSGRHK---------------QEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVI 245 (429)
T ss_pred CCCCEEEEECCCCCc---------------chHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEE
Confidence 468999999998521 223456666676666666677888777777666665555432 366666
Q ss_pred Ee
Q 028885 83 LL 84 (202)
Q Consensus 83 li 84 (202)
+.
T Consensus 246 lT 247 (429)
T TIGR01425 246 IT 247 (429)
T ss_pred EE
Confidence 64
No 316
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=42.12 E-value=88 Score=22.71 Aligned_cols=52 Identities=10% Similarity=0.130 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEecc
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
-..+.+.+...++++.+ +++-.++|.|||-++....-...+.....+.++.-
T Consensus 33 ~~~~~l~~~aA~~L~~~-l~~~~~iGv~wG~Tl~~~~~~l~~~~~~~~~vV~l 84 (255)
T PF04198_consen 33 DILESLGEAAAEYLSEL-LKDGDVIGVGWGRTLYAVANHLPPKSLPNVTVVPL 84 (255)
T ss_dssp HHHHHHHHHHHHHHHHH---TTEEEEE-TSHHHHHHHHTS--SSSSCEEEEES
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCEEEEcchHHHHHHHHhcCccCCCCcEEEEC
Confidence 35666777777777775 34555999999999988777766655555554443
No 317
>cd01406 SIR2-like Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.
Probab=41.82 E-value=52 Score=23.46 Aligned_cols=64 Identities=19% Similarity=0.085 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHH------HHHHHHHhc-CCceEEEecChhhHHHHHHHHh-----CcccccceeEe
Q 028885 17 YGYSDKPNPRDFFDKPFYTFETWASQ------LNDFCKDVV-KDQAFFICNSIGGLVGLQAAVM-----EPEICRGMILL 84 (202)
Q Consensus 17 ~G~S~~~~~~~~~~~~~~~~~~~~~~------l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~-----~p~~v~~lvli 84 (202)
||..+.+.. .-.|.+++.+. +..+++.+- ...+++||.|+.=.....+... ....-+..+++
T Consensus 143 HG~~~~~~~------~VlT~~dY~~~~~~~~~~~~~l~~ll~~~~~LFiG~S~~D~~i~~ll~~~~~~~~~~~~~hy~~~ 216 (242)
T cd01406 143 HGDVDDDES------IVLTKSDYERYYLKNGWATKFLKSDLEKYTVLFIGYSLTDPNIRYLLERLRKNYEGKHASHFALL 216 (242)
T ss_pred ecccCCCCc------eEecHHHHHHHHhccHHHHHHHHHHHhcCcEEEEEcCCCCCcHHHHHHHHHHHhccCCCceEEEE
Confidence 555555442 35677777653 345555543 4789999999987655554433 12234455555
Q ss_pred cc
Q 028885 85 NI 86 (202)
Q Consensus 85 ~~ 86 (202)
.-
T Consensus 217 ~~ 218 (242)
T cd01406 217 QK 218 (242)
T ss_pred eC
Confidence 43
No 318
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=41.78 E-value=56 Score=22.92 Aligned_cols=17 Identities=41% Similarity=0.671 Sum_probs=11.9
Q ss_pred cCCceEEEecChhhHHH
Q 028885 51 VKDQAFFICNSIGGLVG 67 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a 67 (202)
..-+.+++=||+||..+
T Consensus 122 d~~~~~~i~~slgGGTG 138 (216)
T PF00091_consen 122 DSLDGFFIVHSLGGGTG 138 (216)
T ss_dssp TTESEEEEEEESSSSHH
T ss_pred cccccceecccccceec
Confidence 44467888888877643
No 319
>PHA00490 terminal protein
Probab=41.58 E-value=37 Score=23.55 Aligned_cols=38 Identities=16% Similarity=0.272 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
+...++.+...+++--|.|.| .+..+.....|..|.|+
T Consensus 105 vde~~~~~~Dke~isGGk~qG-Tvgqr~~llsp~~vtG~ 142 (266)
T PHA00490 105 VDEILDRFNDKEVISGGKSQG-TVGQRKELLSPPDVTGF 142 (266)
T ss_pred HHHHHHHhcCcceeeCCCCCC-cHhhhhhhcCCcccCCC
Confidence 445566777788999999999 99999999988877764
No 320
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=41.53 E-value=1.1e+02 Score=22.18 Aligned_cols=57 Identities=14% Similarity=0.121 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC----ceEE---EecChhh-HHHHHHHHhCcccccceeEeccc
Q 028885 31 KPFYTFETWASQLNDFCKDVVKD----QAFF---ICNSIGG-LVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~l~~~----~~~l---vG~S~Gg-~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
+..-+...+...|..++.+.+.+ .+++ .|.+.-| ..+..++...|..|+++.+++|.
T Consensus 14 WYt~~~~~Ls~QL~~wL~~~~~~~~paRaiIaPHAGY~YcG~~Aa~ay~qvdps~v~RIFILGPS 78 (296)
T KOG3086|consen 14 WYTASGPQLSAQLEGWLSQVTLTKGPARAIIAPHAGYTYCGSCAAYAYKQVDPSNVQRIFILGPS 78 (296)
T ss_pred cccCCHHHHHHHHHHHHhccCCCCCCceEEEcCCCCcccchHHHHHHHhhcChhHeeEEEEecCc
Confidence 45557788889999999887643 3444 6888855 55556777789999999999997
No 321
>PRK07877 hypothetical protein; Provisional
Probab=41.18 E-value=50 Score=28.17 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=29.4
Q ss_pred HHhcCCceEEEecChhhHHHHHHHHhCcccc-cceeEeccc
Q 028885 48 KDVVKDQAFFICNSIGGLVGLQAAVMEPEIC-RGMILLNIS 87 (202)
Q Consensus 48 ~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v-~~lvli~~~ 87 (202)
+.|...+|.|+|-+.|+.++..+|.. .| ..+++++.-
T Consensus 103 ~~L~~~~V~IvG~GlGs~~a~~Lara---GvvG~l~lvD~D 140 (722)
T PRK07877 103 ERLGRLRIGVVGLSVGHAIAHTLAAE---GLCGELRLADFD 140 (722)
T ss_pred HHHhcCCEEEEEecHHHHHHHHHHHc---cCCCeEEEEcCC
Confidence 34556789999999999999888865 34 889999875
No 322
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=40.98 E-value=39 Score=23.00 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=14.8
Q ss_pred HhcCCceEEEecChhh-HHHHHHH
Q 028885 49 DVVKDQAFFICNSIGG-LVGLQAA 71 (202)
Q Consensus 49 ~l~~~~~~lvG~S~Gg-~~a~~~a 71 (202)
++-...-+|||||+-- .-++.+-
T Consensus 97 ~li~~~tILVGHsL~nDL~aL~l~ 120 (174)
T cd06143 97 LLVDLGCIFVGHGLAKDFRVINIQ 120 (174)
T ss_pred HHcCCCCEEEeccchhHHHHhcCc
Confidence 3333567999999976 4444443
No 323
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=40.44 E-value=20 Score=26.74 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.9
Q ss_pred EEEecChhhHHHHHHHH
Q 028885 56 FFICNSIGGLVGLQAAV 72 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~ 72 (202)
.+.|.|.||.+|+.++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 57999999999998874
No 324
>COG4850 Uncharacterized conserved protein [Function unknown]
Probab=40.25 E-value=75 Score=24.13 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCceEEEecCh--hhHHHHHHHHhCcccccceeEeccc
Q 028885 42 QLNDFCKDVVKDQAFFICNSI--GGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~--Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
-+..++..+...+++|||-|- =--+=.+++..+|++|.++.+=+..
T Consensus 267 ~l~nil~~~p~~kfvLVGDsGE~DpeIYae~v~~fP~RIl~I~IRdvs 314 (373)
T COG4850 267 SLRNILRRYPDRKFVLVGDSGEHDPEIYAEMVRCFPNRILGIYIRDVS 314 (373)
T ss_pred HHHHHHHhCCCceEEEecCCCCcCHHHHHHHHHhCccceeeEeeeecc
Confidence 455577788889999999884 2345556778899999998877765
No 325
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=40.14 E-value=55 Score=20.53 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHH
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGL 68 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~ 68 (202)
....++=.+..++.+.++++||+--|++..
T Consensus 45 ~~~sl~~av~~l~v~~ivV~gHt~CG~v~a 74 (119)
T cd00382 45 VLASLEYAVEVLGVKHIIVCGHTDCGAVKA 74 (119)
T ss_pred HHHHHHHHHHhhCCCEEEEEccCCCcHHHH
Confidence 444555556788999999999987666554
No 326
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=39.90 E-value=63 Score=17.45 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=24.2
Q ss_pred eEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEE
Q 028885 8 RVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFI 58 (202)
Q Consensus 8 ~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lv 58 (202)
-++.+|.-|+ ..|+++++..-...+.......|+++|
T Consensus 17 ilfi~D~Se~--------------CGysie~Q~~L~~~ik~~F~~~P~i~V 53 (58)
T PF06858_consen 17 ILFIIDPSEQ--------------CGYSIEEQLSLFKEIKPLFPNKPVIVV 53 (58)
T ss_dssp EEEEE-TT-T--------------TSS-HHHHHHHHHHHHHHTTTS-EEEE
T ss_pred EEEEEcCCCC--------------CCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 3566666655 357999999888888888876777655
No 327
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=39.52 E-value=22 Score=27.09 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.7
Q ss_pred EEEecChhhHHHHHHHHhC
Q 028885 56 FFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~~~ 74 (202)
.+.|.|.||.+|+.++...
T Consensus 46 liaGTStGgiiA~~la~~~ 64 (349)
T cd07214 46 VIAGTSTGGLITAMLTAPN 64 (349)
T ss_pred EEeeCCHHHHHHHHHhcCC
Confidence 4799999999999999853
No 328
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=39.13 E-value=72 Score=23.73 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=13.2
Q ss_pred cceEEEeccCCCCCCCCCC
Q 028885 6 SHRVYSIDLIGYGYSDKPN 24 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~ 24 (202)
+-.+|.+| ||||..+.-.
T Consensus 55 ~~~~IvID-pGHGG~DpGA 72 (287)
T PRK10319 55 GKRVVMLD-PGHGGIDTGA 72 (287)
T ss_pred CCeEEEEE-CCCCCCCCCC
Confidence 34688899 6999887543
No 329
>PF15566 Imm18: Immunity protein 18
Probab=39.08 E-value=54 Score=17.24 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhcCCceEEEecChhhHH
Q 028885 36 FETWASQLNDFCKDVVKDQAFFICNSIGGLV 66 (202)
Q Consensus 36 ~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~ 66 (202)
++-+++.+..+......+.++++--||||.=
T Consensus 4 L~~L~~~l~~L~~~~~~~H~Hlmtp~WgG~E 34 (52)
T PF15566_consen 4 LELLQDQLENLQEKEPFDHEHLMTPDWGGEE 34 (52)
T ss_pred HHHHHHHHHHHHhccCCCCceeccccccccc
Confidence 4556666776666666678999999999853
No 330
>PF07380 Pneumo_M2: Pneumovirus M2 protein; InterPro: IPR009969 This family consists of several Pneumovirus M2 proteins. The M2-1 protein of respiratory syncytial virus (RSV) is a transcription processivity factor that is essential for virus replication [].
Probab=38.85 E-value=45 Score=19.13 Aligned_cols=23 Identities=9% Similarity=0.128 Sum_probs=20.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCC
Q 028885 31 KPFYTFETWASQLNDFCKDVVKD 53 (202)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~l~~~ 53 (202)
+-.+|..++.+++..+++++|+.
T Consensus 57 eIhWTsq~Lid~~q~fLqhlgis 79 (89)
T PF07380_consen 57 EIHWTSQDLIDATQNFLQHLGIS 79 (89)
T ss_pred hhccchHHHHHHHHHHHHHcCCC
Confidence 45789999999999999999864
No 331
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=38.78 E-value=22 Score=23.38 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.5
Q ss_pred CceEEEecChhhHHH
Q 028885 53 DQAFFICNSIGGLVG 67 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a 67 (202)
+-.+++|.|.|+++.
T Consensus 68 ~G~vi~G~SAGA~i~ 82 (154)
T PF03575_consen 68 KGGVIIGTSAGAMIL 82 (154)
T ss_dssp TTSEEEEETHHHHCT
T ss_pred CCCEEEEEChHHhhc
Confidence 448999999999884
No 332
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=38.55 E-value=94 Score=20.52 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecCh-hhHHHHHHHHh
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSI-GGLVGLQAAVM 73 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~-Gg~~a~~~a~~ 73 (202)
..++.+.+++.+.+++++.+. .++++|++- |.-++.++|.+
T Consensus 71 ~~~~~~~~a~~l~~~~~~~~~-~lVl~~~t~~g~~la~~lA~~ 112 (164)
T PF01012_consen 71 AEYDPEAYADALAELIKEEGP-DLVLFGSTSFGRDLAPRLAAR 112 (164)
T ss_dssp TTC-HHHHHHHHHHHHHHHT--SEEEEESSHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhcCC-CEEEEcCcCCCCcHHHHHHHH
Confidence 356889999999999999765 588888875 66777777766
No 333
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=38.52 E-value=61 Score=21.24 Aligned_cols=49 Identities=6% Similarity=-0.038 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.++.++++..+.+.++++|-+....+.......+-..++-.|+.+....
T Consensus 88 t~l~~~L~~~gi~~viv~G~~td~CV~~Ta~~a~~~g~~v~vi~Da~~s 136 (155)
T cd01014 88 TDLEEWLREAGIDHLVICGAMTEMCVDTTVRSAFDLGYDVTVVADACAT 136 (155)
T ss_pred CCHHHHHHHCCCCEEEEEeeccchhHHHHHHHHHHCCCcEEEecccccC
Confidence 3678888899999999999999665555444333334666666666544
No 334
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=38.02 E-value=97 Score=21.52 Aligned_cols=40 Identities=13% Similarity=0.160 Sum_probs=30.3
Q ss_pred HHHHHhcCCceEEEecC-hhhHHHHHHHHhCcccccceeEeccc
Q 028885 45 DFCKDVVKDQAFFICNS-IGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 45 ~~~~~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
+..+.|...++.++|-. +|+.++..++.. -|..+++++..
T Consensus 14 ~~q~~L~~~~V~IvG~GglGs~ia~~La~~---Gvg~i~lvD~D 54 (200)
T TIGR02354 14 KIVQKLEQATVAICGLGGLGSNVAINLARA---GIGKLILVDFD 54 (200)
T ss_pred HHHHHHhCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEECCC
Confidence 34556677789999887 577888877765 47889999886
No 335
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=37.74 E-value=91 Score=20.34 Aligned_cols=35 Identities=6% Similarity=-0.032 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
......++=.+..++.+.++++||+--|.+...+.
T Consensus 39 ~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~ 73 (153)
T PF00484_consen 39 DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALD 73 (153)
T ss_dssp HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHH
T ss_pred cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHh
Confidence 33444555556778899999999999887775444
No 336
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=37.43 E-value=25 Score=26.52 Aligned_cols=17 Identities=18% Similarity=0.229 Sum_probs=14.8
Q ss_pred EEEecChhhHHHHHHHH
Q 028885 56 FFICNSIGGLVGLQAAV 72 (202)
Q Consensus 56 ~lvG~S~Gg~~a~~~a~ 72 (202)
.+.|.|.||.+|+.+++
T Consensus 43 li~GTStGgiia~~l~~ 59 (329)
T cd07215 43 LVAGTSTGGILTCLYLC 59 (329)
T ss_pred eeeccCHHHHHHHHHhC
Confidence 47999999999998764
No 337
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=37.29 E-value=1.4e+02 Score=21.21 Aligned_cols=53 Identities=17% Similarity=0.162 Sum_probs=31.9
Q ss_pred CHHHHHHHHHHHHHHhcCC---ceEEEecChhhHHHHHHHHh---------C-cccccceeEeccc
Q 028885 35 TFETWASQLNDFCKDVVKD---QAFFICNSIGGLVGLQAAVM---------E-PEICRGMILLNIS 87 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~---~~~lvG~S~Gg~~a~~~a~~---------~-p~~v~~lvli~~~ 87 (202)
.....++.+.+.+...... ++++=.+|.||...+..... . -.+++++|+=+++
T Consensus 46 ~~~~~~~~l~~~l~~~~~~~~~~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P 111 (240)
T PF05705_consen 46 RLAPAADKLLELLSDSQSASPPPILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCP 111 (240)
T ss_pred chHHHHHHHHHHhhhhccCCCCCEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCC
Confidence 3444555555555544333 79999999988776665441 1 1137777766654
No 338
>PRK10768 ribonucleoside hydrolase RihC; Provisional
Probab=36.95 E-value=1.4e+02 Score=22.32 Aligned_cols=48 Identities=17% Similarity=0.265 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh-Ccc---cccceeEeccch
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM-EPE---ICRGMILLNISL 88 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~-~p~---~v~~lvli~~~~ 88 (202)
.-++.+.+.+++.. +++.|+ +.|.+.-+..|.+ +|+ +|+.++++++..
T Consensus 102 ~A~~~i~~~~~~~~-~~itil--a~GPLTNlA~al~~~P~i~~~i~~iviMGG~~ 153 (304)
T PRK10768 102 PAVEAMRDALMNAP-EPVTLV--AIGPLTNIALLLSTYPEVKPYIKRIVLMGGSA 153 (304)
T ss_pred cHHHHHHHHHHhCC-CCEEEE--ECCcHHHHHHHHHHChhhHhhcCEEEEecCCc
Confidence 34455555555443 588888 5677665555544 555 688899999875
No 339
>PLN00416 carbonate dehydratase
Probab=36.66 E-value=42 Score=24.46 Aligned_cols=31 Identities=10% Similarity=0.015 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
..++=.+..|+.+.++++|||--|.+...+.
T Consensus 128 asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~ 158 (258)
T PLN00416 128 AAVEYAVVHLKVENILVIGHSCCGGIKGLMS 158 (258)
T ss_pred hHHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 3444445678899999999999777665554
No 340
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=36.62 E-value=1.7e+02 Score=22.20 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHH-hCcc---cccceeEeccchh
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV-MEPE---ICRGMILLNISLR 89 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~-~~p~---~v~~lvli~~~~~ 89 (202)
.-++.+.+.+++.. ++.|+ +.|.+.-+..|. .+|+ +|+.++++++...
T Consensus 100 ~A~~~i~~~~~~~~--eitiv--a~GPLTNlA~al~~~P~~~~~ik~iviMGG~~~ 151 (320)
T cd02653 100 SAAQAWVDLARAHP--DLIGL--ATGPLTNLALALREEPELPRLLRRLVIMGGAFN 151 (320)
T ss_pred CHHHHHHHHHHhCC--CeEEE--ECCchHHHHHHHHHChHHHHhcCEEEEECCCcC
Confidence 34555666666544 78888 455544444443 4565 6889999998743
No 341
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=36.13 E-value=1.4e+02 Score=23.62 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=34.7
Q ss_pred CCCCHHHHHHHHHHH-HHHhcCCceEEEecC-hhhHHHHHHHHhCcccccceeEecc
Q 028885 32 PFYTFETWASQLNDF-CKDVVKDQAFFICNS-IGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~-~~~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
...++...+-++..- ...+..+++.+||.+ ||..++..++... ++.+++.|=
T Consensus 157 ~~VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g---~~~i~IaNR 210 (414)
T COG0373 157 GAVSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKG---VKKITIANR 210 (414)
T ss_pred CccchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCC---CCEEEEEcC
Confidence 455666666555543 344677889999999 8888888777653 445555553
No 342
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=35.97 E-value=37 Score=21.68 Aligned_cols=25 Identities=8% Similarity=0.062 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcCCceEEEecCh
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSI 62 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~ 62 (202)
.+.+....+.+.+..++.+||||.-
T Consensus 27 ~~~~~a~~~~~~ip~GQPIlVGHHS 51 (126)
T PF12083_consen 27 AAYEAANRMAEAIPFGQPILVGHHS 51 (126)
T ss_pred HHHHHHHHHHhccCCCCCeeccccc
Confidence 3444555666677778899999853
No 343
>PRK15219 carbonic anhydrase; Provisional
Probab=35.95 E-value=44 Score=24.14 Aligned_cols=31 Identities=10% Similarity=0.064 Sum_probs=22.5
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
..++=.+..|+.+.++++|||--|.+...+.
T Consensus 131 ~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~ 161 (245)
T PRK15219 131 GSMEFACAVAGAKVVLVMGHTACGAVKGAID 161 (245)
T ss_pred hHHHHHHHHcCCCEEEEecCCcchHHHHHHh
Confidence 3444446678888999999999777665543
No 344
>COG1957 URH1 Inosine-uridine nucleoside N-ribohydrolase [Nucleotide transport and metabolism]
Probab=35.36 E-value=2e+02 Score=21.82 Aligned_cols=53 Identities=8% Similarity=0.071 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc---cccceeEeccchhhh
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE---ICRGMILLNISLRML 91 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v~~lvli~~~~~~~ 91 (202)
..-++.+.+.+.+-. +++.|+..+==..+|+.+. +.|+ +|+.+|++++.....
T Consensus 102 ~~A~~~ii~~l~~~~-g~vtlva~GPLTNiAlAl~-~~P~i~~~ik~iviMGGa~~~~ 157 (311)
T COG1957 102 KHAVDAIIDTLMANP-GEVTLVATGPLTNIALALR-KDPEIAKRIKEIVIMGGAFFVP 157 (311)
T ss_pred CcHHHHHHHHHHhCC-CcEEEEecCChHHHHHHHH-hCcchhhhhcEEEEecCccCCC
Confidence 455666666666554 7899985443344444333 3454 799999999986653
No 345
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=35.29 E-value=56 Score=25.04 Aligned_cols=31 Identities=23% Similarity=0.297 Sum_probs=23.1
Q ss_pred ceEEEecChhhHHHHHHHH-hCcccccceeEe
Q 028885 54 QAFFICNSIGGLVGLQAAV-MEPEICRGMILL 84 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~-~~p~~v~~lvli 84 (202)
++++||-|.||.-|++... ..|..+..-|++
T Consensus 158 ~iV~IGaStGGp~AL~~il~~lP~~~p~pvvI 189 (350)
T COG2201 158 KIVAIGASTGGPAALRAVLPALPADFPAPVVI 189 (350)
T ss_pred cEEEEEeCCCCHHHHHHHHHhCCCCCCCCEEE
Confidence 6889999999999998554 457766644444
No 346
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=35.01 E-value=27 Score=27.15 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=28.2
Q ss_pred CceEEEecChhhHHHHHHHHhCcccccceeE
Q 028885 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMIL 83 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvl 83 (202)
++++++|.+.||+-.=..+..+|+.+.++.+
T Consensus 119 g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i 149 (392)
T PRK14046 119 ERVRVIASARGGMEIEEIAAKEPEAIIQVVV 149 (392)
T ss_pred CcEEEEEeCCCCCchHHHhhhChhheEEEEc
Confidence 4789999999999999999999999998876
No 347
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=34.96 E-value=1e+02 Score=20.25 Aligned_cols=49 Identities=10% Similarity=-0.083 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.++..+++..+.+.++++|...-..+.......+-...+-.|+.+....
T Consensus 77 t~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~g~~v~v~~Da~as 125 (157)
T cd01012 77 EAFRKALKATGRKQVVLAGLETHVCVLQTALDLLEEGYEVFVVADACGS 125 (157)
T ss_pred HHHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHCCCEEEEEeeCCCC
Confidence 3678888899999999999999766665554443345776777766543
No 348
>PRK06193 hypothetical protein; Provisional
Probab=34.84 E-value=72 Score=22.38 Aligned_cols=29 Identities=3% Similarity=-0.071 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHhc--CCceEEEecCh
Q 028885 34 YTFETWASQLNDFCKDVV--KDQAFFICNSI 62 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~--~~~~~lvG~S~ 62 (202)
.+.+.+.+++.++++.+. .+.+.+|||..
T Consensus 135 ~~~~~y~~~l~~~I~~l~~~~~~vLlVgHnp 165 (206)
T PRK06193 135 ERNALLKAGLRPLLTTPPDPGTNTVLVGHDD 165 (206)
T ss_pred hhHHHHHHHHHHHHhhCCCCCCeEEEEeCch
Confidence 566777788888888875 35799999995
No 349
>PLN03006 carbonate dehydratase
Probab=34.59 E-value=62 Score=24.22 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCceEEEecChhhHHHHHH
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~ 70 (202)
...++=.+.+|+.+.++++|||--|.+...+
T Consensus 159 ~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal 189 (301)
T PLN03006 159 KAALEFSVNTLNVENILVIGHSRCGGIQALM 189 (301)
T ss_pred hhhHHHHHHHhCCCEEEEecCCCchHHHHHh
Confidence 3445555678899999999999977666433
No 350
>PF08197 TT_ORF2a: pORF2a truncated protein; InterPro: IPR013267 Most isolated ORF2 of TT virus (TTV) encode a 49 amino acid protein (pORF2a) because of an in-frame stop codon. ORF2s isolated from G1 TTV encode a 202 amino acid protein (pORF2ab) [].
Probab=34.45 E-value=34 Score=17.09 Aligned_cols=14 Identities=29% Similarity=0.456 Sum_probs=10.6
Q ss_pred ceEEEeccCCCCCC
Q 028885 7 HRVYSIDLIGYGYS 20 (202)
Q Consensus 7 ~~v~~~D~~G~G~S 20 (202)
-.+-+-||||+|.-
T Consensus 35 gairardwpg~gq~ 48 (49)
T PF08197_consen 35 GAIRARDWPGYGQG 48 (49)
T ss_pred cceEeccCCCcCCC
Confidence 35678899999864
No 351
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=34.29 E-value=29 Score=27.14 Aligned_cols=17 Identities=24% Similarity=0.487 Sum_probs=14.3
Q ss_pred CCCcceEEeecCCCCCC
Q 028885 183 QVKVSFFKLDQIHNMPI 199 (202)
Q Consensus 183 ~i~~Pvl~i~G~~D~p~ 199 (202)
.+.+||++|+|.+|.|.
T Consensus 108 ~~~iPVf~I~GNHD~p~ 124 (405)
T TIGR00583 108 NVAIPVFSIHGNHDDPS 124 (405)
T ss_pred cCCCCEEEEcCCCCCcc
Confidence 46899999999999553
No 352
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=33.70 E-value=1.4e+02 Score=21.67 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhc-CCceEEEecChhhHHHHHHHHhCccc
Q 028885 39 WASQLNDFCKDVV-KDQAFFICNSIGGLVGLQAAVMEPEI 77 (202)
Q Consensus 39 ~~~~l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~~p~~ 77 (202)
+.+.+..+.+.+. .++++++|..-.|.++...|...+.+
T Consensus 35 I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~t 74 (257)
T cd05007 35 IARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPT 74 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhcccc
Confidence 3444444444443 45799999999999998777665433
No 353
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=33.70 E-value=52 Score=22.97 Aligned_cols=23 Identities=4% Similarity=0.046 Sum_probs=16.2
Q ss_pred HHHHHHHhcCCceEEEecChhhH
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGL 65 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~ 65 (202)
+.++++....+.+.||||+=|=.
T Consensus 142 i~~~i~~~~~~tVLIVGHnp~i~ 164 (201)
T PRK15416 142 IKDLQRKSPDKNIVIFTHNHCLT 164 (201)
T ss_pred HHHHHHhCCCCEEEEEeCchhHH
Confidence 35556666567899999997643
No 354
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=33.68 E-value=91 Score=24.62 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=27.6
Q ss_pred HHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 43 LNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 43 l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
+.+.+.....+++.++| ||.+++++|...-+.=..+.++...
T Consensus 139 l~~~l~~~~~~~vvViG---gG~ig~E~A~~l~~~g~~Vtli~~~ 180 (438)
T PRK13512 139 IDQFIKANQVDKALVVG---AGYISLEVLENLYERGLHPTLIHRS 180 (438)
T ss_pred HHHHHhhcCCCEEEEEC---CCHHHHHHHHHHHhCCCcEEEEecc
Confidence 33444443457899999 7888888887654444567777654
No 355
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.59 E-value=2.3e+02 Score=22.73 Aligned_cols=66 Identities=18% Similarity=0.239 Sum_probs=51.3
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCccc--cccee
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEI--CRGMI 82 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~--v~~lv 82 (202)
.+|.|+.+|--|. ...-+++.+.+.++-+.+....+.+|--+|=|.-|...|..+-+. +.++|
T Consensus 181 ~~~DvvIvDTAGR---------------l~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~e~l~itGvI 245 (451)
T COG0541 181 EGYDVVIVDTAGR---------------LHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFNEALGITGVI 245 (451)
T ss_pred cCCCEEEEeCCCc---------------ccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHhhhcCCceEE
Confidence 4578888887765 122366788888888888888999999999999999988876654 77888
Q ss_pred Eec
Q 028885 83 LLN 85 (202)
Q Consensus 83 li~ 85 (202)
+.=
T Consensus 246 lTK 248 (451)
T COG0541 246 LTK 248 (451)
T ss_pred EEc
Confidence 764
No 356
>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]
Probab=33.12 E-value=52 Score=25.57 Aligned_cols=46 Identities=11% Similarity=0.254 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCceEEEecChh-hHHHHHHHHhCcccccceeEeccc
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIG-GLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~G-g~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
.+|+...+..+-...-++||||+= =.-++.+ .||.-++..++....
T Consensus 280 l~dvq~~l~~~~~~~TILVGHSLenDL~aLKl--~H~~ViDTa~lf~~~ 326 (380)
T KOG2248|consen 280 LEDVQKELLELISKNTILVGHSLENDLKALKL--DHPSVIDTAVLFKHP 326 (380)
T ss_pred HHHHHHHHHhhcCcCcEEEeechhhHHHHHhh--hCCceeeeeEEEecC
Confidence 356666666665678999999996 4666666 577777777666553
No 357
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=32.84 E-value=26 Score=25.21 Aligned_cols=34 Identities=12% Similarity=0.106 Sum_probs=25.4
Q ss_pred CceEEEecChhhHHHHHHHHhCcc--cccceeEecc
Q 028885 53 DQAFFICNSIGGLVGLQAAVMEPE--ICRGMILLNI 86 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~~~p~--~v~~lvli~~ 86 (202)
.+....|+++|+..+..++...+. ....+++++.
T Consensus 132 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 167 (299)
T COG1073 132 GPRILAGLSLGGPSAGALLAWGPTRLDASRIVVWGE 167 (299)
T ss_pred CcceEEEEEeeccchHHHhhcchhHHHhhcccceee
Confidence 688999999999999999988874 2334444443
No 358
>PF13289 SIR2_2: SIR2-like domain
Probab=32.44 E-value=1.1e+02 Score=19.26 Aligned_cols=17 Identities=18% Similarity=0.145 Sum_probs=12.8
Q ss_pred hcCCceEEEecChhhHH
Q 028885 50 VVKDQAFFICNSIGGLV 66 (202)
Q Consensus 50 l~~~~~~lvG~S~Gg~~ 66 (202)
+....++++|+|++=.-
T Consensus 84 l~~~~~lfiGys~~D~~ 100 (143)
T PF13289_consen 84 LRSKTLLFIGYSFNDPD 100 (143)
T ss_pred HcCCCEEEEEECCCCHH
Confidence 44568999999987543
No 359
>PRK08671 methionine aminopeptidase; Provisional
Probab=32.32 E-value=49 Score=24.52 Aligned_cols=32 Identities=0% Similarity=-0.118 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCCce-EEEecChhh
Q 028885 33 FYTFETWASQLNDFCKDVVKDQA-FFICNSIGG 64 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~-~lvG~S~Gg 64 (202)
..+..+..+.+.++++..+.+++ .+.||++|=
T Consensus 124 G~~~~dv~~~i~~vi~~~G~~~~~~~~GHgiG~ 156 (291)
T PRK08671 124 GVSVGEIGRVIEETIRSYGFKPIRNLTGHGLER 156 (291)
T ss_pred CCCHHHHHHHHHHHHHHcCCcccCCCcccCcCC
Confidence 34666667777777888777664 689999994
No 360
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=32.18 E-value=62 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=24.5
Q ss_pred ceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
++++||-++||+.++.-+.+....=..++++++.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~ 34 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPS 34 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCC
Confidence 4789999999988877765443233578888765
No 361
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=32.15 E-value=86 Score=22.70 Aligned_cols=17 Identities=24% Similarity=0.114 Sum_probs=13.7
Q ss_pred CcceEEEeccCCCCCCC
Q 028885 5 KSHRVYSIDLIGYGYSD 21 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~ 21 (202)
.+..+..+|.||.+.+.
T Consensus 77 ~g~~i~vIDTPGl~~~~ 93 (249)
T cd01853 77 DGFKLNIIDTPGLLESV 93 (249)
T ss_pred CCeEEEEEECCCcCcch
Confidence 35678999999998763
No 362
>PRK10437 carbonic anhydrase; Provisional
Probab=32.01 E-value=59 Score=23.11 Aligned_cols=31 Identities=10% Similarity=-0.083 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
.-++=.+..++.+.++++||+--|.+...+.
T Consensus 79 ~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~ 109 (220)
T PRK10437 79 SVVQYAVDVLEVEHIIICGHYGCGGVQAAVE 109 (220)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCchHHHHHHc
Confidence 3444445678899999999999777766553
No 363
>PRK07281 methionine aminopeptidase; Reviewed
Probab=31.82 E-value=65 Score=23.90 Aligned_cols=29 Identities=3% Similarity=0.166 Sum_probs=17.5
Q ss_pred CHHHHHHHHHHHHHHhcCCce-EEEecChh
Q 028885 35 TFETWASQLNDFCKDVVKDQA-FFICNSIG 63 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~-~lvG~S~G 63 (202)
+..++.+.+.++++..+...+ +.+||++|
T Consensus 173 ~~~di~~a~~~~~~~~G~~~~~~~~GHGIG 202 (286)
T PRK07281 173 RIGDIGAAIQEYAESRGYGVVRDLVGHGVG 202 (286)
T ss_pred cHHHHHHHHHHHHHHcCCccCCCeeeeeCC
Confidence 444444445555555555443 57999999
No 364
>PF00857 Isochorismatase: Isochorismatase family; InterPro: IPR000868 This is a family of hydrolase enzymes. Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate (3.3.2.1 from EC).; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1XN4_A 3KL2_F 1YZV_A 3IRV_A 1IM5_A 1ILW_A 3PL1_A 1NF9_A 1NF8_A 1X9G_A ....
Probab=31.60 E-value=74 Score=21.07 Aligned_cols=49 Identities=10% Similarity=-0.012 Sum_probs=34.0
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
.++.+++++.+.+.++|+|...-..+.......+-.-++-.|+.+....
T Consensus 101 t~L~~~L~~~gi~~vil~G~~t~~CV~~Ta~~a~~~g~~v~v~~Da~~~ 149 (174)
T PF00857_consen 101 TDLDEILRKRGIDTVILCGVATDVCVLATARDAFDRGYRVIVVEDACAS 149 (174)
T ss_dssp SSHHHHHHHTTESEEEEEEESTTTHHHHHHHHHHHTT-EEEEEEEEEEB
T ss_pred ccccccccccccceEEEcccccCcEEehhHHHHHHCCCEEEEEChhhcC
Confidence 4678888899999999999999776655544444344666666666533
No 365
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=31.56 E-value=59 Score=22.83 Aligned_cols=36 Identities=8% Similarity=-0.122 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
.....++=.+..|+.+.++++||+=-|++...+...
T Consensus 77 ~~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~~ 112 (207)
T COG0288 77 SVLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDDQ 112 (207)
T ss_pred chhHHHHHHHHHcCCCEEEEecCCCcHHHHhccccc
Confidence 344455555678899999999999988777665543
No 366
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=31.44 E-value=25 Score=24.90 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=41.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEec
Q 028885 18 GYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLN 85 (202)
Q Consensus 18 G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~ 85 (202)
|.|-.... ....|-.+-++|+-++++..+.+-..+=|.|.|+.++-.=-.+-.+-++++=|++
T Consensus 74 g~s~nq~l-----~Y~~t~~DEvEDLy~ll~~VK~~~p~~eaVS~GAIlS~YQr~RVEnVC~RL~L~~ 136 (277)
T KOG2316|consen 74 GRSINQKL-----QYTKTEGDEVEDLYELLKTVKEKIPDVEAVSVGAILSDYQRTRVENVCSRLGLVS 136 (277)
T ss_pred Cccccccc-----ccccCCCchHHHHHHHHHHHHhhCCCceeeehhhhHhHHHHHHHHHHHhhhCcee
Confidence 55655443 3566778889999999998875545788999999887654444333344444443
No 367
>cd02652 nuc_hydro_2 NH_2: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=30.74 E-value=1.3e+02 Score=22.55 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh-------Ccc----cccceeEeccch
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM-------EPE----ICRGMILLNISL 88 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~-------~p~----~v~~lvli~~~~ 88 (202)
+-++.+.+.+++....++.|+ +.|.+.-+..+.+ +|+ +|+.++++++..
T Consensus 94 ~A~~~i~~~l~~~~~~~vtiv--aiGplTNlA~ll~~~~d~l~~pel~~~kvk~lviMGG~~ 153 (293)
T cd02652 94 DAVKALRRLLASAEDASVTIV--SIGPLTNLAALLDADADPLTGPELVRQKVKRLVVMGGAF 153 (293)
T ss_pred cHHHHHHHHHHhcCCCCEEEE--EcccHHHHHHHHHhccccccCcHHHHhhCCEEEEeCCCc
Confidence 445666666665545688888 5555554444443 454 467899999875
No 368
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=30.18 E-value=1.6e+02 Score=22.36 Aligned_cols=53 Identities=8% Similarity=0.105 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEecc
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
......+.....++++..- ++-.++|.|||-++....-...|...+.+-++.-
T Consensus 94 ~~~~~~lg~aaA~~l~~~l-~~gdvigV~wGrTv~a~~~~l~~~~~~~~~vV~l 146 (321)
T COG2390 94 DSILRRLGRAAAQYLESLL-KPGDVIGVGWGRTLSAVVDNLPPAPLRDVKVVQL 146 (321)
T ss_pred hHHHHHHHHHHHHHHHHhC-CCCCEEEEeccHHHHHHHHhcCcCccCCeEEEEC
Confidence 4455667777788887663 3444899999999999888888876555555443
No 369
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=30.17 E-value=1.1e+02 Score=19.91 Aligned_cols=46 Identities=11% Similarity=-0.049 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
.+.++++..+.++++|+|.+.-..+........-...+-.|+.+..
T Consensus 100 ~l~~~L~~~~i~~vil~G~~t~~CV~~T~~~a~~~G~~v~vi~Da~ 145 (161)
T cd00431 100 DLDELLRERGIDTLVVCGIATDICVLATARDALDLGYRVIVVEDAC 145 (161)
T ss_pred CHHHHHHHCCCCEEEEEecCcChhHHHHHHHHHHCCCEEEEehhhc
Confidence 6778888889999999999987666555443332335445555544
No 370
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.90 E-value=91 Score=24.84 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhC
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
.|..++...+..+++.++|..+.|.-+.++....
T Consensus 3 ~~~~~~~~~~~~~~i~v~G~G~sG~a~a~~L~~~ 36 (458)
T PRK01710 3 RDFNEFKKFIKNKKVAVVGIGVSNIPLIKFLVKL 36 (458)
T ss_pred chHHHHhhhhcCCeEEEEcccHHHHHHHHHHHHC
Confidence 3667777777778899999999999777776553
No 371
>PF06857 ACP: Malonate decarboxylase delta subunit (MdcD); InterPro: IPR023439 This family consists of the acyl carrier protein found in malonate decarboxylase and citrate lyase. This subunit has the same covalently bound prosthetic group, derived from and similar to coenzyme A, as does citrate lyase, although this protein and the acyl carrier protein of citrate lyase do not show significant sequence similarity. Both malonyl and acetyl groups are transferred to the prosthetic group for catalysis.
Probab=29.78 E-value=86 Score=18.55 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhhHHHH
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGL 68 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~ 68 (202)
+.+-+-+.+++++++.+.+.+.-+..|++=..
T Consensus 42 ~~i~~vi~~~l~~~~i~~~~v~i~D~GAld~v 73 (87)
T PF06857_consen 42 DQIRAVIRETLEELGIEDAKVEINDKGALDCV 73 (87)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEeCCCCHHH
Confidence 45556677888889999999999999986443
No 372
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=29.75 E-value=1.8e+02 Score=21.81 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=21.7
Q ss_pred HHHHHHHhc-CCceEEEecChhhHHHHHHHHhC
Q 028885 43 LNDFCKDVV-KDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 43 l~~~~~~l~-~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
+..+.+.+. .++++++|....|.++...+...
T Consensus 52 v~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~ 84 (299)
T PRK05441 52 VDAAAAALRQGGRLIYIGAGTSGRLGVLDASEC 84 (299)
T ss_pred HHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhC
Confidence 333334432 35799999999999996666643
No 373
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=29.64 E-value=56 Score=24.22 Aligned_cols=32 Identities=6% Similarity=-0.051 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHHHhcCCce-EEEecChhh
Q 028885 33 FYTFETWASQLNDFCKDVVKDQA-FFICNSIGG 64 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~-~lvG~S~Gg 64 (202)
..+..+..+.+.++++..|..++ .+.|||+|-
T Consensus 123 G~~~~dV~~ai~~~i~~~G~~~~~~~~GHgig~ 155 (291)
T cd01088 123 DVRLGEIGEAIEEVIESYGFKPIRNLTGHSIER 155 (291)
T ss_pred CCcHHHHHHHHHHHHHHcCCEEeecCCccCccC
Confidence 34566666677777777777664 589999994
No 374
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=29.44 E-value=1.5e+02 Score=23.80 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=11.9
Q ss_pred eEEEeccCCCCCCCCCC
Q 028885 8 RVYSIDLIGYGYSDKPN 24 (202)
Q Consensus 8 ~v~~~D~~G~G~S~~~~ 24 (202)
-+|++| ||||..+.-.
T Consensus 192 ~vIvID-pGHGG~DpGA 207 (445)
T PRK10431 192 VIIAID-AGHGGQDPGA 207 (445)
T ss_pred eEEEEe-CCCCCCCCCC
Confidence 367788 7999987644
No 375
>PLN03019 carbonic anhydrase
Probab=29.29 E-value=1.2e+02 Score=23.04 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~ 70 (202)
..++=.+.+++.+.++++|||--|.+...+
T Consensus 203 aSIEYAV~~L~V~~IVV~GHs~CGaVkAal 232 (330)
T PLN03019 203 AAIEYAVLHLKVENIVVIGHSACGGIKGLM 232 (330)
T ss_pred hhHHHHHHHhCCCEEEEecCCCchHHHHHH
Confidence 445545678899999999999866665544
No 376
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=29.18 E-value=1.1e+02 Score=20.70 Aligned_cols=41 Identities=15% Similarity=0.007 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecC-hhhHHHHHHHHh
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNS-IGGLVGLQAAVM 73 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S-~Gg~~a~~~a~~ 73 (202)
..+....++.++.....+..+++.++|-+ |+|.....+...
T Consensus 25 p~~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~ 66 (168)
T cd01080 25 PCTPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN 66 (168)
T ss_pred CChHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh
Confidence 34555555555555444566889999999 566644444444
No 377
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=28.88 E-value=56 Score=24.48 Aligned_cols=21 Identities=24% Similarity=-0.056 Sum_probs=17.9
Q ss_pred CceEEEecChhhHHHHHHHHh
Q 028885 53 DQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
.+++|+|+|=||.+.-.+...
T Consensus 193 ~~~~LiGFSKGcvVLNqll~E 213 (303)
T PF10561_consen 193 PPLTLIGFSKGCVVLNQLLYE 213 (303)
T ss_pred CceEEEEecCcchHHHHHHHH
Confidence 489999999999988877655
No 378
>PRK01581 speE spermidine synthase; Validated
Probab=28.87 E-value=1.5e+02 Score=23.14 Aligned_cols=48 Identities=10% Similarity=0.078 Sum_probs=30.3
Q ss_pred HHHHHHHH--HHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccchh
Q 028885 39 WASQLNDF--CKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 39 ~~~~l~~~--~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
+.+.+... ..+...+++.++|-..|+ +++.+.+++. +..+++++....
T Consensus 136 YHE~Lvhp~m~~h~~PkrVLIIGgGdG~--tlrelLk~~~-v~~It~VEIDpe 185 (374)
T PRK01581 136 YHEALVHPIMSKVIDPKRVLILGGGDGL--ALREVLKYET-VLHVDLVDLDGS 185 (374)
T ss_pred HHHHHHHHHHHhCCCCCEEEEECCCHHH--HHHHHHhcCC-CCeEEEEeCCHH
Confidence 44555442 334556789999977776 4455566763 777888776543
No 379
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=28.82 E-value=38 Score=26.21 Aligned_cols=15 Identities=7% Similarity=0.167 Sum_probs=13.2
Q ss_pred CCCcceEEeecCCCC
Q 028885 183 QVKVSFFKLDQIHNM 197 (202)
Q Consensus 183 ~i~~Pvl~i~G~~D~ 197 (202)
...+|+++|.|.+|.
T Consensus 73 ~~~Ipv~~I~GNHD~ 87 (390)
T COG0420 73 DAGIPVVVIAGNHDS 87 (390)
T ss_pred cCCCcEEEecCCCCc
Confidence 378999999999994
No 380
>PF03681 UPF0150: Uncharacterised protein family (UPF0150); InterPro: IPR005357 This family of small proteins is uncharacterised. In Q9A3L8 from SWISSPROT this domain is found next to a DNA binding helix-turn-helix domain IPR002145 from INTERPRO, which suggests that this is some kind of ligand binding domain.; PDB: 2DSY_C 2YZT_A 3KWR_A.
Probab=28.73 E-value=45 Score=16.74 Aligned_cols=33 Identities=18% Similarity=-0.055 Sum_probs=23.4
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKD 49 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 49 (202)
.+|.+..+|+||+-- ..-|.++..+.+.+.+..
T Consensus 12 ~~y~~~~pdlpg~~t------------~G~t~eea~~~~~eal~~ 44 (48)
T PF03681_consen 12 GGYVAYFPDLPGCFT------------QGDTLEEALENAKEALEL 44 (48)
T ss_dssp SSEEEEETTCCTCEE------------EESSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccChhh------------cCCCHHHHHHHHHHHHHH
Confidence 458999999998841 234777777777776654
No 381
>PLN02717 uridine nucleosidase
Probab=28.67 E-value=2.6e+02 Score=21.12 Aligned_cols=50 Identities=10% Similarity=0.069 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc---cccceeEeccchh
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE---ICRGMILLNISLR 89 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v~~lvli~~~~~ 89 (202)
.-++.+.+.+++.. +++.|+.-.==..+|+.+. .+|+ +|+.++++++...
T Consensus 103 ~A~~~i~~~~~~~~-~~itiva~GPLTNlA~al~-~~P~~~~~ik~iviMGG~~~ 155 (316)
T PLN02717 103 SAAEFLVEKVSEYP-GEVTVVALGPLTNLALAIK-LDPSFAKKVGQIVVLGGAFF 155 (316)
T ss_pred CHHHHHHHHHHhCC-CCEEEEECCcHHHHHHHHH-HChHHHhhcCEEEEeCCCcC
Confidence 34455555555543 5788885444444444333 3676 7999999998754
No 382
>PF02972 Phycoerythr_ab: Phycoerythrin, alpha/beta chain; InterPro: IPR004228 Cryptophytes are unicellular photosynthetic algae that use a lumenally located light-harvesting system, which is distinct from the phycobilisome structure found in cyanobacteria and red algae. One of the key components of this system is water-soluble phycoerythrin (PE) 545 whose expression is enhanced by low light levels []. Phycoerythrin (PE) 545 is a heterodimeric of alpha(1)alpha(2)betabeta subunits. Each alpha subunit carries a covalently linked 15,16-dihydrobiliverdin chromophore that probably acts as the final energy acceptor. The architecture of the heterodimer suggests that PE 545 may dock to an acceptor protein via a deep cleft and that energy may be transferred via this intermediary protein to the reaction centre [].; GO: 0030089 phycobilisome; PDB: 1XG0_B 1QGW_B 1XF6_B.
Probab=28.62 E-value=50 Score=17.53 Aligned_cols=12 Identities=17% Similarity=0.177 Sum_probs=6.6
Q ss_pred EEEeccCCCCCC
Q 028885 9 VYSIDLIGYGYS 20 (202)
Q Consensus 9 v~~~D~~G~G~S 20 (202)
|-.+|.|||.+.
T Consensus 5 ItiFDhRGC~r~ 16 (57)
T PF02972_consen 5 ITIFDHRGCDRA 16 (57)
T ss_dssp EEEEE-TT-SS-
T ss_pred EEEecccccCCC
Confidence 557899999544
No 383
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=28.60 E-value=76 Score=22.47 Aligned_cols=33 Identities=9% Similarity=0.053 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHHhcCCc-eEEEecChhhHH
Q 028885 34 YTFETWASQLNDFCKDVVKDQ-AFFICNSIGGLV 66 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~-~~lvG~S~Gg~~ 66 (202)
.+..+..+.+.+++++.+.+. ...+||++|-.+
T Consensus 132 ~~~~~v~~~~~~~~~~~G~~~~~~~~GHgiG~~~ 165 (238)
T cd01086 132 NRIGDIGHAIEKYAEKNGYSVVREFGGHGIGRKF 165 (238)
T ss_pred CCHHHHHHHHHHHHHHcCcceecCccccCCCCcc
Confidence 344555555556666666543 356899999865
No 384
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=28.35 E-value=1.7e+02 Score=20.51 Aligned_cols=38 Identities=11% Similarity=0.114 Sum_probs=29.3
Q ss_pred HHHhcCCceEEEecC-hhhHHHHHHHHhCcccccceeEeccc
Q 028885 47 CKDVVKDQAFFICNS-IGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 47 ~~~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
.+.+...++.++|-+ +|+.++..++.. -|..+++++..
T Consensus 23 q~~L~~~~V~ViG~GglGs~ia~~La~~---Gvg~i~lvD~D 61 (212)
T PRK08644 23 LEKLKKAKVGIAGAGGLGSNIAVALARS---GVGNLKLVDFD 61 (212)
T ss_pred HHHHhCCCEEEECcCHHHHHHHHHHHHc---CCCeEEEEeCC
Confidence 345566789999976 688888888765 57889999886
No 385
>cd01015 CSHase N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.
Probab=28.19 E-value=1.2e+02 Score=20.37 Aligned_cols=48 Identities=13% Similarity=-0.020 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
.++..+++..+++.++|+|.+.-..+-......+-...+-.|+.+...
T Consensus 103 t~L~~~L~~~gi~~vvi~G~~t~~CV~~Ta~~A~~~Gy~v~vv~Da~a 150 (179)
T cd01015 103 TSLAATLTARGVDTLIVAGCSTSGCIRATAVDAMQHGFRPIVVRECVG 150 (179)
T ss_pred CcHHHHHHHcCCCEEEEeeecccHhHHHHHHHHHHCCCeEEEeecccc
Confidence 478888999999999999999866554444333333455566666653
No 386
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=28.15 E-value=74 Score=22.15 Aligned_cols=24 Identities=21% Similarity=0.070 Sum_probs=18.9
Q ss_pred HHHHhcCCceEEEecChhhHHHHHH
Q 028885 46 FCKDVVKDQAFFICNSIGGLVGLQA 70 (202)
Q Consensus 46 ~~~~l~~~~~~lvG~S~Gg~~a~~~ 70 (202)
+++.+. +..+++|.|.|+++....
T Consensus 107 i~~~~~-~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 107 ILKRVA-RGVVIGGTSAGAAVMGET 130 (210)
T ss_pred HHHHHH-cCCeEEEcCHHHHHhhhc
Confidence 344444 678999999999999886
No 387
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=27.77 E-value=1.5e+02 Score=18.24 Aligned_cols=34 Identities=12% Similarity=0.100 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCCceEEEecChhhHHHHHHHHh
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
.+++.++++.=..++++|+=||.-+.++...-.+
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~ 40 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALRE 40 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHH
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHH
Confidence 3567777777666899999999999988876654
No 388
>PLN03014 carbonic anhydrase
Probab=27.61 E-value=1.5e+02 Score=22.79 Aligned_cols=30 Identities=10% Similarity=-0.007 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQA 70 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~ 70 (202)
..++=.+.+|+.+.++++|||--|.+...+
T Consensus 208 asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~ 237 (347)
T PLN03014 208 AAIEYAVLHLKVENIVVIGHSACGGIKGLM 237 (347)
T ss_pred hHHHHHHHHhCCCEEEEeCCCCchHHHHHH
Confidence 444445678889999999999866655544
No 389
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=27.41 E-value=1.1e+02 Score=21.15 Aligned_cols=32 Identities=6% Similarity=-0.050 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
...++=.+..++.+.++++|||--|.+...+.
T Consensus 74 ~asleyav~~l~v~~ivV~GH~~Cgav~Aa~~ 105 (190)
T cd00884 74 SAAIEYAVAVLKVEHIVVCGHSDCGGIRALLS 105 (190)
T ss_pred hhhHHHHHHHhCCCEEEEeCCCcchHHHHHhc
Confidence 34444456788899999999998776666543
No 390
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=27.37 E-value=67 Score=22.49 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=18.5
Q ss_pred HHHHHhcCCceEEEecChhhHHHHHH
Q 028885 45 DFCKDVVKDQAFFICNSIGGLVGLQA 70 (202)
Q Consensus 45 ~~~~~l~~~~~~lvG~S~Gg~~a~~~ 70 (202)
+.++..-.+...++|.|.|+.+....
T Consensus 105 ~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 105 AILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 33443323568899999999998873
No 391
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=27.36 E-value=1.9e+02 Score=20.11 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=28.4
Q ss_pred HHhcCCceEEEecC-hhhHHHHHHHHhCcccccceeEeccc
Q 028885 48 KDVVKDQAFFICNS-IGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 48 ~~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
+.+...++.++|-. +|+.++..++.. .|..+++++..
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~---Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA---GVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc---CCCeEEEecCC
Confidence 35666789999987 577777777665 48899999986
No 392
>COG1246 ArgA N-acetylglutamate synthase and related acetyltransferases [Amino acid transport and metabolism]
Probab=27.14 E-value=1.4e+02 Score=19.84 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHhcCCceEEEec
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICN 60 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~ 60 (202)
..+.+.+.+-.++++++.++++-.
T Consensus 84 ~~Ll~~~~~~Ar~~gi~~lf~LTt 107 (153)
T COG1246 84 ERLLERLLADARELGIKELFVLTT 107 (153)
T ss_pred HHHHHHHHHHHHHcCCceeeeeec
Confidence 446667777777888888777754
No 393
>PF01221 Dynein_light: Dynein light chain type 1 ; InterPro: IPR001372 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella. The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits (see IPR004273 from INTERPRO), intermediate size subunits and small subunits. Among the small subunits, there is a family of highly conserved proteins which make up this family [, ]. Both type 1 (DLC1) and 2 (DLC2) dynein light chains have a similar two-layer alpha-beta core structure consisting of beta-alpha(2)-beta-X-beta(2) [, ].; GO: 0007017 microtubule-based process, 0005875 microtubule associated complex; PDB: 1F95_A 1F96_A 1F3C_A 3P8M_B 2XQQ_C 1RE6_A 1CMI_A 1PWK_A 1PWJ_A 4DS1_C ....
Probab=27.10 E-value=1e+02 Score=18.08 Aligned_cols=32 Identities=13% Similarity=0.012 Sum_probs=20.0
Q ss_pred CHHHHHHHHHHHHHHhcCCce-EEEecChhhHH
Q 028885 35 TFETWASQLNDFCKDVVKDQA-FFICNSIGGLV 66 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~-~lvG~S~Gg~~ 66 (202)
+..+.++.+.+.++.--.... .+||.|+|+.+
T Consensus 34 ~~~eiA~~iK~~lD~~yG~~Wh~IVG~~Fg~~~ 66 (89)
T PF01221_consen 34 DEKEIAEFIKQELDKKYGPTWHCIVGKSFGSSV 66 (89)
T ss_dssp SHHHHHHHHHHHHHHHHSS-EEEEEESEEEEEE
T ss_pred cHHHHHHHHHHHHhcccCCceEEEECCcEEEEE
Confidence 446677777777766533443 37899998643
No 394
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=27.10 E-value=2.2e+02 Score=21.54 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCceEEEecChhh
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGG 64 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg 64 (202)
.++..++..+.-..+++=||+||
T Consensus 78 ~ir~~~E~cD~~~gf~i~~slgG 100 (328)
T cd00286 78 IIRKEAEECDSLQGFFITHSLGG 100 (328)
T ss_pred HHHHHHHhCCCccceEEEeecCC
Confidence 33344444444466777788876
No 395
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=27.09 E-value=52 Score=30.10 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.7
Q ss_pred HHHHHHHHhcCCceEEEecChhh
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGG 64 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg 64 (202)
.+.+++..++++|--+||||.|-
T Consensus 571 aLtDlLs~lgi~PDGIvGHS~GE 593 (2376)
T KOG1202|consen 571 ALTDLLSCLGIRPDGIVGHSLGE 593 (2376)
T ss_pred HHHHHHHhcCCCCCcccccccch
Confidence 34566778899999999999974
No 396
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=26.90 E-value=1.9e+02 Score=20.61 Aligned_cols=41 Identities=20% Similarity=0.132 Sum_probs=21.1
Q ss_pred CCCHHHHHHHHHHH---HHHhcCCceEEEecChhhHHHHHHHHh
Q 028885 33 FYTFETWASQLNDF---CKDVVKDQAFFICNSIGGLVGLQAAVM 73 (202)
Q Consensus 33 ~~~~~~~~~~l~~~---~~~l~~~~~~lvG~S~Gg~~a~~~a~~ 73 (202)
..+.+.+.+.+.++ +.+.|.++++++..--|-.-++..+++
T Consensus 78 sl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~~ 121 (237)
T PF02633_consen 78 SLSPETLIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAAR 121 (237)
T ss_dssp BB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHHH
Confidence 34455555554444 445678898877665554435555544
No 397
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=26.90 E-value=1.7e+02 Score=22.96 Aligned_cols=50 Identities=8% Similarity=0.080 Sum_probs=29.9
Q ss_pred CcceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecCh
Q 028885 5 KSHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSI 62 (202)
Q Consensus 5 ~~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~ 62 (202)
+.|.||.+|.|.+++|.... .--..++.+.+...++-+..+..+++-.+.
T Consensus 289 ~~fDlIilDPPsF~r~k~~~--------~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~ 338 (393)
T COG1092 289 EKFDLIILDPPSFARSKKQE--------FSAQRDYKDLNDLALRLLAPGGTLVTSSCS 338 (393)
T ss_pred CcccEEEECCcccccCcccc--------hhHHHHHHHHHHHHHHHcCCCCEEEEEecC
Confidence 36999999999999986633 123344444444444445444455444333
No 398
>KOG2730 consensus Methylase [General function prediction only]
Probab=26.81 E-value=57 Score=23.33 Aligned_cols=46 Identities=15% Similarity=-0.048 Sum_probs=37.9
Q ss_pred CCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcc
Q 028885 31 KPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPE 76 (202)
Q Consensus 31 ~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~ 76 (202)
+..+|.+..+..++..+......++++...+-||.-...+|+++|.
T Consensus 73 wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~ 118 (263)
T KOG2730|consen 73 WFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPY 118 (263)
T ss_pred eEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCe
Confidence 3568999999999988877766788888888888888888888875
No 399
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=26.79 E-value=3.3e+02 Score=21.74 Aligned_cols=16 Identities=19% Similarity=0.121 Sum_probs=12.6
Q ss_pred CCcceEEEeccCCCCC
Q 028885 4 AKSHRVYSIDLIGYGY 19 (202)
Q Consensus 4 ~~~~~v~~~D~~G~G~ 19 (202)
.++|.++.+|-+|...
T Consensus 180 ~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 180 ENGFDVVIVDTAGRLQ 195 (428)
T ss_pred hcCCCEEEEeCCCccc
Confidence 3568999999999743
No 400
>PLN02154 carbonic anhydrase
Probab=26.74 E-value=1.2e+02 Score=22.64 Aligned_cols=32 Identities=13% Similarity=0.051 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
...++=.+..++.+.++++|||--|.+...+.
T Consensus 153 ~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~ 184 (290)
T PLN02154 153 NSALEFAVTTLQVENIIVMGHSNCGGIAALMS 184 (290)
T ss_pred hhHHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 33455556788899999999998666665543
No 401
>cd01013 isochorismatase Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological systems. Isochorismatase is part of the phenazine biosynthesis pathway. Phenazines are antimicrobial compounds that provide the competitive advantage for certain bacteria.
Probab=26.68 E-value=1.1e+02 Score=21.13 Aligned_cols=48 Identities=13% Similarity=-0.130 Sum_probs=35.1
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
.++..+|+..+.+.++++|.+.-..+.......+-.-.+-.|+.+...
T Consensus 131 T~L~~~Lr~~gi~~lii~Gv~T~~CV~~Ta~~A~~~Gy~v~vv~Da~a 178 (203)
T cd01013 131 SPLLERLKESGRDQLIITGVYAHIGCLSTAVDAFMRDIQPFVVADAIA 178 (203)
T ss_pred CCHHHHHHHcCCCEEEEEEeccChhHHHHHHHHHHCCCeEEEeccccC
Confidence 378888999999999999999977666655444434466666666653
No 402
>PRK12318 methionine aminopeptidase; Provisional
Probab=26.66 E-value=77 Score=23.56 Aligned_cols=29 Identities=7% Similarity=0.134 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHHhcCCce-EEEecChh
Q 028885 35 TFETWASQLNDFCKDVVKDQA-FFICNSIG 63 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~-~lvG~S~G 63 (202)
+..+..+.+.++++..+...+ +.+||++|
T Consensus 183 ~~~dv~~a~~~~~~~~G~~~~~~~~GHgIG 212 (291)
T PRK12318 183 PLYEIGEVIENCADKYGFSVVDQFVGHGVG 212 (291)
T ss_pred CHHHHHHHHHHHHHHcCCccCCCcccCCcC
Confidence 444444445555555555432 56899999
No 403
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.56 E-value=1.1e+02 Score=22.98 Aligned_cols=32 Identities=16% Similarity=0.099 Sum_probs=23.5
Q ss_pred HHHHHHHHhc----CCceEEEecC--hhhHHHHHHHHh
Q 028885 42 QLNDFCKDVV----KDQAFFICNS--IGGLVGLQAAVM 73 (202)
Q Consensus 42 ~l~~~~~~l~----~~~~~lvG~S--~Gg~~a~~~a~~ 73 (202)
.+.+++++.+ .+.+.++|.| ||-.++..+...
T Consensus 145 aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ 182 (301)
T PRK14194 145 GCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA 182 (301)
T ss_pred HHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC
Confidence 4445555544 4689999997 899999998855
No 404
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=26.41 E-value=2.4e+02 Score=21.23 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHH-hCcc---cccceeEeccchh
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV-MEPE---ICRGMILLNISLR 89 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~-~~p~---~v~~lvli~~~~~ 89 (202)
-++.+.+.+++. .+++.|+ +.|.+.-+..|. ++|+ +++.++++++...
T Consensus 104 a~~~i~~~~~~~-~~~itiv--a~GPLTNlA~al~~~P~~~~~i~~iviMGG~~~ 155 (311)
T PRK10443 104 AVELMAKTLRES-AEPVTLV--STGPQTNVALLLASHPELHSKIARIVIMGGAMG 155 (311)
T ss_pred HHHHHHHHHHhC-CCCeEEE--EccchHHHHHHHHHCchhhhhhCEEEEccCCCC
Confidence 345566655554 3688888 667766655554 3554 6899999998753
No 405
>PRK13253 citrate lyase subunit gamma; Provisional
Probab=25.97 E-value=1.2e+02 Score=18.26 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhhHHHH
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGGLVGL 68 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~ 68 (202)
+.+-+-+.+++++++...+.+.-++.|+.=..
T Consensus 43 ~~i~~vv~~~l~~~~v~~~~i~i~D~GAld~v 74 (92)
T PRK13253 43 DQIRAVILETLAKLGVENAQVKVDDKGALDCV 74 (92)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEcCCCCHHH
Confidence 45566677888889999999999999985443
No 406
>PRK09330 cell division protein FtsZ; Validated
Probab=25.66 E-value=1.1e+02 Score=24.00 Aligned_cols=29 Identities=14% Similarity=0.223 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHH
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLV 66 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~ 66 (202)
..-++...+.+.+.....++|=|+|||..
T Consensus 83 aaee~~e~I~~~l~~~D~vfI~AGmGGGT 111 (384)
T PRK09330 83 AAEESREEIREALEGADMVFITAGMGGGT 111 (384)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecCCCcc
Confidence 33345566666777778888999998653
No 407
>cd02649 nuc_hydro_CeIAG nuc_hydro_CeIAG: Nucleoside hydrolases similar to the inosine-adenosine-guanosine-preferring nucleoside hydrolase from Caenorhabditis elegans. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the purine-preferring nucleoside hydrolase (IAG-NH) from C. elegans and the salivary purine nucleosidase from Aedes aegypti. C. elegans IAG-NH exhibits a high affinity for the substrate analogue p-nitrophenylriboside (p-NPR).
Probab=25.54 E-value=2.9e+02 Score=20.81 Aligned_cols=48 Identities=10% Similarity=0.245 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHH-HhCcc---cccceeEeccchh
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA-VMEPE---ICRGMILLNISLR 89 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a-~~~p~---~v~~lvli~~~~~ 89 (202)
-++.+.+.+++.. +++.++. .|.+.-+..| ..+|+ +++.++++++...
T Consensus 104 a~~~i~~~~~~~~-~~vtiva--~GPLTNlA~al~~~p~~~~~i~~iviMGG~~~ 155 (306)
T cd02649 104 AVDAIIRLVREYP-GEITLVA--LGPLTNLALAYRLDPSLPQKIKRLYIMGGNRE 155 (306)
T ss_pred HHHHHHHHHHhCC-CCeEEEe--cccHHHHHHHHHHChHHHHhcCeEEEeCCCcc
Confidence 4455556555543 5888884 5554444333 34564 6899999998754
No 408
>PF02044 Bombesin: Bombesin-like peptide; InterPro: IPR000874 Bombesin-like peptides comprise a large family of peptides which were initially isolated from amphibian skin, where they stimulate smooth muscle contraction. They were later found to be widely distributed in mammalian neural and endocrine cells. The amphibian peptides which belong to this family are currently classified into three subfamilies [, ]; the Bombesin group, which includes bombesin and alytesin; the Ranatensin group, which includes ranatensins, litorin, and Rohdei litorin; and the Phyllolitorin group, which includes Leu(8)- and Phe(8)-phyllolitorins. In mammals and birds two categories of bombesin-like peptides are known [, ], gastrin-releasing peptide (GRP), which stimulates the release of gastrin as well as other gastrointestinal hormones, and neuromedin B (NMB), a neuropeptide whose function is not yet clear. Bombesin-like peptides, like many other active peptides, are synthesized as larger protein precursors that are enzymatically converted to their mature forms. The final peptides are eight to fourteen residues long.; GO: 0007218 neuropeptide signaling pathway; PDB: 1C9A_A 1C98_A.
Probab=25.30 E-value=13 Score=13.43 Aligned_cols=6 Identities=17% Similarity=0.479 Sum_probs=2.1
Q ss_pred EecChh
Q 028885 58 ICNSIG 63 (202)
Q Consensus 58 vG~S~G 63 (202)
+||=||
T Consensus 6 vGh~Mg 11 (14)
T PF02044_consen 6 VGHFMG 11 (14)
T ss_dssp HHCT--
T ss_pred eeeeec
Confidence 455555
No 409
>cd06583 PGRP Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of
Probab=25.15 E-value=1.5e+02 Score=18.24 Aligned_cols=32 Identities=13% Similarity=-0.075 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-ceEEEecChhh
Q 028885 33 FYTFETWASQLNDFCKDVVKD-QAFFICNSIGG 64 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~-~~~lvG~S~Gg 64 (202)
...++.+++.+..++++.++. .-.|+||....
T Consensus 85 ~~q~~~~~~L~~~l~~~~~i~~~~~i~~H~~~~ 117 (126)
T cd06583 85 AAQLEALAELLAYLVKRYGIPPDYRIVGHRDVS 117 (126)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCEEEecccCC
Confidence 456677777777888888876 78899998754
No 410
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=24.77 E-value=1.1e+02 Score=20.83 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEEecC
Q 028885 35 TFETWASQLNDFCKDVVKDQAFFICNS 61 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~~lvG~S 61 (202)
......+.+..+++......+.|.||.
T Consensus 97 ~~~~~L~~~a~~L~~~p~~~i~V~GHT 123 (190)
T COG2885 97 KAQATLDELAKYLKKNPITRILVEGHT 123 (190)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 344555666677777777889999994
No 411
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=24.35 E-value=1.7e+02 Score=19.47 Aligned_cols=30 Identities=10% Similarity=-0.013 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCceEEEecChhhHHHHH
Q 028885 40 ASQLNDFCKDVVKDQAFFICNSIGGLVGLQ 69 (202)
Q Consensus 40 ~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~ 69 (202)
...++=.+..++.+.++++||+--|.+...
T Consensus 79 ~~sl~yav~~l~v~~IvV~GHt~CG~~~a~ 108 (154)
T cd03378 79 LGSLEYAVEVLGVPLVVVLGHESCGAVAAA 108 (154)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCccHHHHH
Confidence 344444456788889999999996655544
No 412
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=24.27 E-value=75 Score=23.83 Aligned_cols=25 Identities=12% Similarity=-0.032 Sum_probs=21.4
Q ss_pred cCCceEEEecChhhHHHHHHHHhCc
Q 028885 51 VKDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
+.++|.++|-|-|=.++.+.++.+.
T Consensus 40 gPKkVLviGaSsGyGLa~RIsaaFG 64 (398)
T COG3007 40 GPKKVLVIGASSGYGLAARISAAFG 64 (398)
T ss_pred CCceEEEEecCCcccHHHHHHHHhC
Confidence 3568999999999999999888764
No 413
>cd01011 nicotinamidase Nicotinamidase/pyrazinamidase (PZase). Nicotinamidase, a ubiquitous enzyme in prokaryotes, converts nicotinamide to nicotinic acid (niacin) and ammonia, which in turn can be recycled to make nicotinamide adenine dinucleotide (NAD). The same enzyme is also called pyrazinamidase, because in converts the tuberculosis drug pyrazinamide (PZA) into its active form pyrazinoic acid (POA).
Probab=24.18 E-value=2e+02 Score=19.82 Aligned_cols=48 Identities=10% Similarity=-0.049 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
.++..+|+..+++.++++|...-..+........-..++-.|+.+...
T Consensus 127 t~L~~~L~~~~i~~lii~G~~t~~CV~~T~~~a~~~g~~v~v~~Da~~ 174 (196)
T cd01011 127 TGLAEYLRERGIDRVDVVGLATDYCVKATALDALKAGFEVRVLEDACR 174 (196)
T ss_pred hhHHHHHHHCCCCEEEEEEecccHHHHHHHHHHHHCCCEEEEeccccC
Confidence 578888999999999999999866654443333333466666666553
No 414
>PRK11609 nicotinamidase/pyrazinamidase; Provisional
Probab=24.15 E-value=1.8e+02 Score=20.26 Aligned_cols=48 Identities=6% Similarity=-0.053 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
.++..+|+..+++.++++|...-..+-......+-...+-+|+.+...
T Consensus 131 T~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~dA~~~gy~v~v~~Da~a 178 (212)
T PRK11609 131 TALDDWLREHGITELIVMGLATDYCVKFTVLDALALGYQVNVITDGCR 178 (212)
T ss_pred ccHHHHHHHcCCCEEEEEEeccCHHHHHHHHHHHHCCCEEEEEeeccC
Confidence 578889999999999999999965554444333333466666666553
No 415
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=24.09 E-value=1.4e+02 Score=21.25 Aligned_cols=10 Identities=10% Similarity=-0.044 Sum_probs=6.3
Q ss_pred cceEEEeccC
Q 028885 6 SHRVYSIDLI 15 (202)
Q Consensus 6 ~~~v~~~D~~ 15 (202)
+..+-.+|++
T Consensus 57 g~~v~~idl~ 66 (219)
T TIGR02690 57 GRETRIFDPP 66 (219)
T ss_pred CCEEEEeCcc
Confidence 5666667654
No 416
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=24.06 E-value=3e+02 Score=20.31 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=40.7
Q ss_pred cceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEE-EecChhhHHHHHHHHhC-cccccceeE
Q 028885 6 SHRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFF-ICNSIGGLVGLQAAVME-PEICRGMIL 83 (202)
Q Consensus 6 ~~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l-vG~S~Gg~~a~~~a~~~-p~~v~~lvl 83 (202)
++.++.+|-+|.... . ....+.+.++++......+++ +.-++++.-+...+..+ +-.++++|+
T Consensus 154 ~~D~ViIDt~Gr~~~--------------~-~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 154 RVDYILIDTAGKNYR--------------A-SETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred CCCEEEEECCCCCcC--------------C-HHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 689999999988321 1 234445556666555545555 44567887777777664 345777777
Q ss_pred e
Q 028885 84 L 84 (202)
Q Consensus 84 i 84 (202)
.
T Consensus 219 T 219 (270)
T PRK06731 219 T 219 (270)
T ss_pred E
Confidence 5
No 417
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=24.01 E-value=83 Score=23.42 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=21.1
Q ss_pred ceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
+|+|||-+.+|..+..+..++- ++ ++++.-.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G--~~-v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG--ID-VTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--CE-EEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcc--cc-cccchhc
Confidence 6899999999998888888863 22 5555543
No 418
>PF10070 DUF2309: Uncharacterized protein conserved in bacteria (DUF2309); InterPro: IPR018752 Members of this family of hypothetical bacterial proteins have no known function.
Probab=24.00 E-value=1.3e+02 Score=26.18 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCC----c-eEEEecCh
Q 028885 32 PFYTFETWASQLNDFCKDVVKD----Q-AFFICNSI 62 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~----~-~~lvG~S~ 62 (202)
..+|.++.++.++.+++.+|.. + |+++||.-
T Consensus 475 ~g~t~~e~~~~ae~~Lr~mGLt~~FAplVvl~GHGS 510 (788)
T PF10070_consen 475 IGFTLEEQADLAEGALRSMGLTENFAPLVVLVGHGS 510 (788)
T ss_pred CCCCHHHHHHHHHHHHHHcCCccCCCCeEEEecCCC
Confidence 5789999999999999999875 3 67899963
No 419
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=23.96 E-value=1.2e+02 Score=24.33 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
=++|..++...++... .|..+.||.+++++++..-..-+.++++.+.
T Consensus 199 eieda~~l~~~~~~~~--~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e 245 (478)
T KOG1336|consen 199 EIEDANRLVAAIQLGG--KVVCVGGGFIGMEVAAALVSKAKSVTVVFPE 245 (478)
T ss_pred cHHHHHHHHHHhccCc--eEEEECchHHHHHHHHHHHhcCceEEEEccC
Confidence 3456666666665433 2334568889999988877777888888775
No 420
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=23.91 E-value=80 Score=23.50 Aligned_cols=31 Identities=3% Similarity=-0.058 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCCce-EEEecChh
Q 028885 33 FYTFETWASQLNDFCKDVVKDQA-FFICNSIG 63 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~-~lvG~S~G 63 (202)
..+..+.-+.+.+++++.+..++ ++.||++|
T Consensus 127 Gv~~~dV~~ai~~vi~~~G~~~i~~~~GHgig 158 (295)
T TIGR00501 127 GVRVGEIGKAIQEVIESYGVKPISNLTGHSMA 158 (295)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeecCCCCccee
Confidence 34566666677777777777664 68999998
No 421
>PRK05716 methionine aminopeptidase; Validated
Probab=23.46 E-value=97 Score=22.17 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=16.9
Q ss_pred CHHHHHHHHHHHHHHhcCCce-EEEecChhhH
Q 028885 35 TFETWASQLNDFCKDVVKDQA-FFICNSIGGL 65 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~-~lvG~S~Gg~ 65 (202)
+..++.+.+.++++..+.... ..+||+.|-.
T Consensus 143 ~~~dv~~~~~~~~~~~g~~~~~~~~GHgiG~~ 174 (252)
T PRK05716 143 RLGDIGHAIQKYAEAEGFSVVREYCGHGIGRK 174 (252)
T ss_pred CHHHHHHHHHHHHHHcCCeeecCccccccCCc
Confidence 444444445555555444332 4578888764
No 422
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=23.30 E-value=48 Score=21.14 Aligned_cols=19 Identities=16% Similarity=0.279 Sum_probs=14.7
Q ss_pred cccCCCCCcceEEeecCCC
Q 028885 178 EELLPQVKVSFFKLDQIHN 196 (202)
Q Consensus 178 ~~~l~~i~~Pvl~i~G~~D 196 (202)
...+.+.+||||++....|
T Consensus 124 ~~v~~~a~~pVLvv~~~~~ 142 (144)
T PRK15118 124 RQLINTVHVDMLIVPLRDE 142 (144)
T ss_pred HHHHhhCCCCEEEecCCcC
Confidence 3557888999999986554
No 423
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=23.02 E-value=1.7e+02 Score=20.30 Aligned_cols=54 Identities=7% Similarity=0.122 Sum_probs=39.6
Q ss_pred CCCCHHHHHHHHHHHHHHh---cCCceEEEecChhhHHHHHHHHhCcccccceeEecc
Q 028885 32 PFYTFETWASQLNDFCKDV---VKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l---~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
..+|++++.+...++.+++ +.+|=.+++-.-||++..++.+.+=. ++-+..+..
T Consensus 5 ~~vSw~~I~~~~~~lA~kI~~s~~~PDvIiaiaRGG~~pariLsd~L~-~~~l~~i~v 61 (192)
T COG2236 5 LYVSWEEIHRLCRALAEKIRASGFKPDVIVAIARGGLIPARILSDFLG-VKPLYSIKV 61 (192)
T ss_pred EEecHHHHHHHHHHHHHHHHHcCCCCCEEEEEcCCceehHHHHHHHhC-CCceEEEEE
Confidence 3467788887777777766 56788999999999999999887643 334444443
No 424
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=23.00 E-value=1.9e+02 Score=24.74 Aligned_cols=39 Identities=3% Similarity=0.089 Sum_probs=26.9
Q ss_pred EEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEe
Q 028885 9 VYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFIC 59 (202)
Q Consensus 9 v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG 59 (202)
.-.+-.||||++ .++++..++.+.+...++..-++.++|
T Consensus 632 te~isCPgCGRT------------~~dlq~~~~~I~~~~~hl~GvkiavMG 670 (733)
T PLN02925 632 TEYVSCPSCGRT------------LFDLQEVSAEIREKTSHLPGVSIAIMG 670 (733)
T ss_pred CeEEECCCCCCc------------cccHHHHHHHHHHHhhcCCCceEEEEe
Confidence 344567888877 345788888888887777655555554
No 425
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=22.92 E-value=94 Score=23.67 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=41.8
Q ss_pred eccCCCCCCCCCCCCCCC-------CCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccce
Q 028885 12 IDLIGYGYSDKPNPRDFF-------DKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGM 81 (202)
Q Consensus 12 ~D~~G~G~S~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~l 81 (202)
+.+||++..+...++.|. ....|+..++.+-+..+++.+++.+.. |-|-.|--|..+....|.+++++
T Consensus 231 f~MPg~~m~dg~d~~lF~~~~a~~a~~GvY~~~dy~dI~~~l~~~W~i~~~~--gL~~eg~~Ard~l~~l~~r~~r~ 305 (330)
T PF03405_consen 231 FRMPGHLMPDGRDPDLFERFSAVAARAGVYTPRDYADILEPLLRRWKIESRT--GLSGEGEKARDYLCALPARLRRF 305 (330)
T ss_dssp ---TTTT---SS-TTHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHTTGGG----S--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhcccCcchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCccc--CCChHHHHHHHHHHhhHHHHHHH
Confidence 678888776643321110 124689999998777788999888777 88999999999999888887765
No 426
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=22.83 E-value=1.3e+02 Score=19.98 Aligned_cols=27 Identities=7% Similarity=0.052 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChh
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIG 63 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~G 63 (202)
...+....++.-.+|.++++++|..++
T Consensus 140 ~sV~~~a~~lA~~lG~~~I~L~G~D~~ 166 (170)
T PF01973_consen 140 GSVANTALQLAYYLGFKPIYLIGQDLA 166 (170)
T ss_pred ccHHHHHHHHHHHHCCCcEEEEeecCC
Confidence 334455556667888889999998775
No 427
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=22.61 E-value=57 Score=21.56 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=16.0
Q ss_pred cChhhHHHHHHHHhCccc
Q 028885 60 NSIGGLVGLQAAVMEPEI 77 (202)
Q Consensus 60 ~S~Gg~~a~~~a~~~p~~ 77 (202)
..||+.+|..+..++|+.
T Consensus 29 g~mG~GIA~~~k~~~P~~ 46 (154)
T PHA02595 29 HTMGSGIAGQLAKAFPQI 46 (154)
T ss_pred CcCChHHHHHHHHHcChH
Confidence 489999999999999974
No 428
>PRK13018 cell division protein FtsZ; Provisional
Probab=22.61 E-value=1.5e+02 Score=23.20 Aligned_cols=27 Identities=15% Similarity=0.319 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVG 67 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a 67 (202)
++..++.+.+.....+++=+||||..+
T Consensus 101 e~~d~I~~~le~~D~vfI~aGLGGGTG 127 (378)
T PRK13018 101 ESRDEIKEVLKGADLVFVTAGMGGGTG 127 (378)
T ss_pred HHHHHHHHHhcCCCEEEEEeeccCcch
Confidence 444555566666677888999987543
No 429
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=22.60 E-value=2.4e+02 Score=18.89 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=21.5
Q ss_pred HHHHHHHh-cCCceEEEecChhhHHHHHHHHhC
Q 028885 43 LNDFCKDV-VKDQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 43 l~~~~~~l-~~~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
+.++.+.+ ..++++++|....+.+|..+..+.
T Consensus 20 ~~~~~~~l~~a~~I~i~G~G~S~~~A~~~~~~l 52 (179)
T TIGR03127 20 LDKLADKIIKAKRIFVAGAGRSGLVGKAFAMRL 52 (179)
T ss_pred HHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHH
Confidence 33344443 246899999998888887777653
No 430
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=22.54 E-value=1.6e+02 Score=21.00 Aligned_cols=37 Identities=5% Similarity=-0.120 Sum_probs=25.8
Q ss_pred CCceEEEecChhhHHHHHHH----HhCcccccceeEeccchhh
Q 028885 52 KDQAFFICNSIGGLVGLQAA----VMEPEICRGMILLNISLRM 90 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a----~~~p~~v~~lvli~~~~~~ 90 (202)
.+++.+.||.||=.=...|+ ..| .|+.+|-+++....
T Consensus 55 Gk~iSvmg~GmGipS~sIY~~ELi~~y--~Vk~iIRvGt~Gal 95 (236)
T COG0813 55 GKKISVMGHGMGIPSISIYSRELITDY--GVKKIIRVGTCGAL 95 (236)
T ss_pred CcEEEEEEecCCCccHHHHHHHHHHHh--CcceEEEEEccccc
Confidence 46899999999965444443 333 48888888876543
No 431
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=22.49 E-value=89 Score=22.31 Aligned_cols=31 Identities=6% Similarity=0.081 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHhcCCc-eEEEecChhhH
Q 028885 35 TFETWASQLNDFCKDVVKDQ-AFFICNSIGGL 65 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~-~~lvG~S~Gg~ 65 (202)
+..++.+.+.++++..+... ...+||++|=.
T Consensus 141 ~~~~v~~~~~~~~~~~g~~~~~~~~GHgiG~~ 172 (247)
T TIGR00500 141 RIGEIGAAIQKYAEAKGFSVVREYCGHGIGRK 172 (247)
T ss_pred CHHHHHHHHHHHHHHcCCEeccCccCCccCcc
Confidence 33444444444444444433 24578888853
No 432
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=22.43 E-value=2.2e+02 Score=18.16 Aligned_cols=50 Identities=10% Similarity=0.052 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCceEEE-ecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 37 ETWASQLNDFCKDVVKDQAFFI-CNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lv-G~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
...++.+..++++++.+++++- +.+.|-. ...-...+-+.++..|++-++
T Consensus 10 ~~~~~~v~~~L~~~~~ep~i~~~~~~~g~t-iie~le~~~~~~~faIvl~Tp 60 (125)
T PF10137_consen 10 LAAAEAVERFLEKLGLEPIIWHEQPNLGQT-IIEKLEEAADSVDFAIVLFTP 60 (125)
T ss_pred HHHHHHHHHHHHhCCCceEEeecCCCCCCc-hHHHHHHHhccCCEEEEEEcc
Confidence 3577789999999998887764 3344444 445455555667777776654
No 433
>COG3023 ampD N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=1.1e+02 Score=22.23 Aligned_cols=29 Identities=10% Similarity=0.011 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHHh-cCCceEEEecCh
Q 028885 34 YTFETWASQLNDFCKDV-VKDQAFFICNSI 62 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l-~~~~~~lvG~S~ 62 (202)
..++.+.+.+.++++.. ++.+-.++|||-
T Consensus 126 AQiqal~~L~k~i~~ryP~I~~~~I~GHsD 155 (257)
T COG3023 126 AQIQALIALLKDIIARYPNITPERIVGHSD 155 (257)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHcccccc
Confidence 34455555556666666 677788899984
No 434
>KOG1578 consensus Predicted carbonic anhydrase involved in protection against oxidative damage [Inorganic ion transport and metabolism]
Probab=22.20 E-value=67 Score=23.56 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
..++-.+..++.+.+.++|||.-|.++..+.
T Consensus 142 AalE~aV~~lkvenIiv~ghs~cgGik~~m~ 172 (276)
T KOG1578|consen 142 AALEYAVTTLKVENIIVIGHSLCGGIKGLMS 172 (276)
T ss_pred chHHHHHHHhccceEEEeccccCCchhhccc
Confidence 4455566788899999999999666665554
No 435
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=22.04 E-value=32 Score=24.24 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=13.5
Q ss_pred CceEEEecChhhHHHHH
Q 028885 53 DQAFFICNSIGGLVGLQ 69 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~ 69 (202)
.-...+|+|.|+.++..
T Consensus 117 ~G~~YiG~SAGA~ia~p 133 (224)
T COG3340 117 AGTPYIGWSAGANIAGP 133 (224)
T ss_pred cCCceEEeccCceeecC
Confidence 35788999999988754
No 436
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=22.01 E-value=16 Score=20.73 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.3
Q ss_pred cCCceEEEecChhhHHHHH
Q 028885 51 VKDQAFFICNSIGGLVGLQ 69 (202)
Q Consensus 51 ~~~~~~lvG~S~Gg~~a~~ 69 (202)
..+++.++||+.|..+-.+
T Consensus 50 r~DpV~ilgq~~gl~iy~R 68 (72)
T PF07578_consen 50 RKDPVFILGQSFGLFIYIR 68 (72)
T ss_pred HcChHHHHHHhcChHHHHH
Confidence 3578999999999887654
No 437
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=21.96 E-value=1.5e+02 Score=21.82 Aligned_cols=44 Identities=23% Similarity=0.222 Sum_probs=23.6
Q ss_pred HHHHHHHHHhcCC---ceEEEecChhhHHHHHHHHhCcccccceeEec
Q 028885 41 SQLNDFCKDVVKD---QAFFICNSIGGLVGLQAAVMEPEICRGMILLN 85 (202)
Q Consensus 41 ~~l~~~~~~l~~~---~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~ 85 (202)
.-+..+++.++++ .|.=+|..|||.... +|.++.-.|.++.+..
T Consensus 49 ~k~~~~~~~~~l~~G~~vLDiGcGwG~~~~~-~a~~~g~~v~gitlS~ 95 (273)
T PF02353_consen 49 RKLDLLCEKLGLKPGDRVLDIGCGWGGLAIY-AAERYGCHVTGITLSE 95 (273)
T ss_dssp HHHHHHHTTTT--TT-EEEEES-TTSHHHHH-HHHHH--EEEEEES-H
T ss_pred HHHHHHHHHhCCCCCCEEEEeCCCccHHHHH-HHHHcCcEEEEEECCH
Confidence 3345556666543 477799998886544 5555544555555543
No 438
>PRK14567 triosephosphate isomerase; Provisional
Probab=21.84 E-value=78 Score=23.07 Aligned_cols=26 Identities=27% Similarity=0.111 Sum_probs=15.4
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecCh
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICNSI 62 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~ 62 (202)
..||-+-.++. ++++| -+.+++|||=
T Consensus 70 Ga~TGEvS~~m----Lkd~G-~~yviiGHSE 95 (253)
T PRK14567 70 GAYTGEISARM----LEDIG-CDYLLIGHSE 95 (253)
T ss_pred CCccCcCCHHH----HHHcC-CCEEEECccc
Confidence 34555544443 34454 4788999983
No 439
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=21.82 E-value=1.4e+02 Score=23.03 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=16.8
Q ss_pred HHHHHHHHHhcCCceEEEecChhhHH
Q 028885 41 SQLNDFCKDVVKDQAFFICNSIGGLV 66 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lvG~S~Gg~~ 66 (202)
++...+.+.+.....+++=|||||..
T Consensus 90 e~~d~Ir~~le~~D~vfI~aglGGGT 115 (349)
T TIGR00065 90 ESRDEIRKLLEGADMVFITAGMGGGT 115 (349)
T ss_pred HHHHHHHHHHhCCCEEEEEEeccCcc
Confidence 34445555565566778889998743
No 440
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=21.82 E-value=1.3e+02 Score=15.21 Aligned_cols=22 Identities=0% Similarity=-0.059 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCceEEEecChhh
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGG 64 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg 64 (202)
++..-+.+++ +|+.++|-+-..
T Consensus 5 eV~~~LR~lg-ePi~lFGE~~~~ 26 (44)
T smart00500 5 EVIRRLRELG-EPITLFGEDDQE 26 (44)
T ss_pred HHHHHHHHcC-CCeeecCCChHH
Confidence 4555566675 799999988654
No 441
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=21.80 E-value=1e+02 Score=20.75 Aligned_cols=29 Identities=10% Similarity=0.163 Sum_probs=21.5
Q ss_pred ceEEEecChhhHHHHHHHHhCcccccceeEec
Q 028885 54 QAFFICNSIGGLVGLQAAVMEPEICRGMILLN 85 (202)
Q Consensus 54 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~ 85 (202)
++++||-+.+|+.+...+.+. =..+++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~---~~~v~ii~ 29 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP---GAKVLIIE 29 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT---TSEEEEES
T ss_pred CEEEEecHHHHHHHHHHHhcC---CCeEEEEe
Confidence 478999999999999888842 33455553
No 442
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=21.79 E-value=1.2e+02 Score=14.90 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=11.8
Q ss_pred HHHHHHHHHhcCCceEEE
Q 028885 41 SQLNDFCKDVVKDQAFFI 58 (202)
Q Consensus 41 ~~l~~~~~~l~~~~~~lv 58 (202)
+++..+++.+..+.+++|
T Consensus 21 ~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 21 EELLEFIEQLNPRKVILV 38 (43)
T ss_dssp HHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 567777777766555554
No 443
>PRK13938 phosphoheptose isomerase; Provisional
Probab=21.77 E-value=2.9e+02 Score=19.22 Aligned_cols=24 Identities=13% Similarity=-0.028 Sum_probs=21.1
Q ss_pred CCceEEEecChhhHHHHHHHHhCc
Q 028885 52 KDQAFFICNSIGGLVGLQAAVMEP 75 (202)
Q Consensus 52 ~~~~~lvG~S~Gg~~a~~~a~~~p 75 (202)
.++++++|.+-.|.+|..++.+..
T Consensus 45 g~rI~i~G~G~S~~~A~~fa~~L~ 68 (196)
T PRK13938 45 GARVFMCGNGGSAADAQHFAAELT 68 (196)
T ss_pred CCEEEEEeCcHHHHHHHHHHHHcC
Confidence 468999999999999999998754
No 444
>PRK08223 hypothetical protein; Validated
Probab=21.75 E-value=2.6e+02 Score=20.92 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=30.2
Q ss_pred HHHhcCCceEEEecC-hhhHHHHHHHHhCcccccceeEeccch
Q 028885 47 CKDVVKDQAFFICNS-IGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 47 ~~~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
-+.+...+|.++|-. +|+.++..+|.. -|..+++++.-.
T Consensus 22 Q~kL~~s~VlIvG~GGLGs~va~~LA~a---GVG~i~lvD~D~ 61 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGGIHLLTLARL---GIGKFTIADFDV 61 (287)
T ss_pred HHHHhcCCEEEECCCHHHHHHHHHHHHh---CCCeEEEEeCCC
Confidence 345666789999987 688888887766 488999998763
No 445
>PF01339 CheB_methylest: CheB methylesterase; InterPro: IPR000673 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the signal transduction response regulator CheB involved in chemotaxis. CheB methylesterase is responsible for removing the methyl group from the gamma-glutamyl methyl ester residues in the methyl-accepting chemotaxis proteins (MCP). The enzyme catalyses the reaction: protein L-glutamate O-methyl ester and water is converted to protein L-glutamate and methanol. CheB is regulated through phosphorylation by CheA. The N-terminal region of the protein is similar to that of other regulatory components of sensory transduction systems. The Myxococcus xanthus FrzG protein also belongs to this family, and is required for the normal aggregation of cells during fruiting body formation.; GO: 0000156 two-component response regulator activity, 0008984 protein-glutamate methylesterase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1CHD_A 1A2O_B 3SFT_A.
Probab=21.71 E-value=65 Score=22.00 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=17.0
Q ss_pred eEEEecChhhHHHHHHH-HhCcccccceeEe
Q 028885 55 AFFICNSIGGLVGLQAA-VMEPEICRGMILL 84 (202)
Q Consensus 55 ~~lvG~S~Gg~~a~~~a-~~~p~~v~~lvli 84 (202)
+++||-|.||.-++.-. ..-|......+++
T Consensus 1 vV~IGaSaGG~~al~~il~~lp~~~~~~ivi 31 (182)
T PF01339_consen 1 VVAIGASAGGPEALQEILSALPADFPAAIVI 31 (182)
T ss_dssp EEEEEE-TTHHHHHCCCHCCS-TTSSSEEEE
T ss_pred CEEEEeCCCCHHHHHHHHHHhccCCCceEEE
Confidence 46788888888777633 3345555544444
No 446
>KOG2697 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=21.68 E-value=1.8e+02 Score=21.89 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=37.8
Q ss_pred ceEEEeccCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCceEEEecChhhH
Q 028885 7 HRVYSIDLIGYGYSDKPNPRDFFDKPFYTFETWASQLNDFCKDVVKDQAFFICNSIGGL 65 (202)
Q Consensus 7 ~~v~~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~ 65 (202)
-.++++|+| .|-|+..-.. ++..+.+..+.|+..-.++=-..+++|++.++.--
T Consensus 233 ~AlvsIDmP-AGPSEVLVIA----DE~a~p~~vA~DLLSQAEHG~DSQviLv~V~lS~~ 286 (446)
T KOG2697|consen 233 EALVSIDMP-AGPSEVLVIA----DEHASPVYVAADLLSQAEHGPDSQVILVVVGLSVD 286 (446)
T ss_pred cceEEeccC-CCCceEEEEe----cCCCChHHHHHHHHhHhhcCCCceEEEEEecCCHH
Confidence 367889998 6777753211 25678888888888777665456898888877654
No 447
>PRK13690 hypothetical protein; Provisional
Probab=21.60 E-value=2.4e+02 Score=19.34 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHh------cCCceEEEecChhhHH
Q 028885 37 ETWASQLNDFCKDV------VKDQAFFICNSIGGLV 66 (202)
Q Consensus 37 ~~~~~~l~~~~~~l------~~~~~~lvG~S~Gg~~ 66 (202)
+.+.+++.++++++ +..+++++|.|..=.+
T Consensus 4 ~~i~~~~~~~~~El~~~a~l~~g~i~VvGcSTSEV~ 39 (184)
T PRK13690 4 EEIKKQTRQILEELLEQANLKPGQIFVLGCSTSEVL 39 (184)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEecchHhhC
Confidence 34444444444433 3467999999975433
No 448
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=21.53 E-value=1.7e+02 Score=19.39 Aligned_cols=42 Identities=14% Similarity=0.123 Sum_probs=31.9
Q ss_pred CCCHHHHHHHHHHHHHHhcC--CceEEEecChhhHHHHHHHHhC
Q 028885 33 FYTFETWASQLNDFCKDVVK--DQAFFICNSIGGLVGLQAAVME 74 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~--~~~~lvG~S~Gg~~a~~~a~~~ 74 (202)
.++.+++.+.+.++.+++.. ++-.++|---||.+-....+++
T Consensus 9 ~is~~~i~~~i~~la~~I~~~~~~d~vvgv~~GG~~fa~~L~~~ 52 (156)
T PRK09177 9 PVSWDQLHRDARALAWRLLPAGQWKGIIAVTRGGLVPAAILARE 52 (156)
T ss_pred EcCHHHHHHHHHHHHHHHHhhCCCCEEEEEecCCeehHHHHHHH
Confidence 47888999888888888753 3578999999998666555543
No 449
>PF15061 DUF4538: Domain of unknown function (DUF4538)
Probab=21.52 E-value=76 Score=17.12 Aligned_cols=16 Identities=44% Similarity=0.785 Sum_probs=13.3
Q ss_pred hhhHHHHHHHHhCccc
Q 028885 62 IGGLVGLQAAVMEPEI 77 (202)
Q Consensus 62 ~Gg~~a~~~a~~~p~~ 77 (202)
.||.+++.-++.||--
T Consensus 11 ~ggfVg~iG~a~Ypi~ 26 (58)
T PF15061_consen 11 VGGFVGLIGAALYPIY 26 (58)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 5899999999999853
No 450
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=21.52 E-value=88 Score=22.45 Aligned_cols=19 Identities=21% Similarity=0.109 Sum_probs=14.8
Q ss_pred CceEEEecChhhHHHHHHH
Q 028885 53 DQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a 71 (202)
+...++|.|.|++++....
T Consensus 112 ~G~~~~G~SAGAii~~~~i 130 (233)
T PRK05282 112 NGTPYIGWSAGANVAGPTI 130 (233)
T ss_pred CCCEEEEECHHHHhhhccc
Confidence 4588999999998865533
No 451
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=21.41 E-value=1.1e+02 Score=19.78 Aligned_cols=31 Identities=10% Similarity=-0.023 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhcCCceEEEecChhhHHHH
Q 028885 38 TWASQLNDFCKDVVKDQAFFICNSIGGLVGL 68 (202)
Q Consensus 38 ~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~ 68 (202)
+....++=.+..++.+.++++||+--|++..
T Consensus 41 ~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~a 71 (142)
T cd03379 41 DAIRSLVVSVYLLGTREIIVIHHTDCGMLTF 71 (142)
T ss_pred hHHHHHHHHHHHhCCCEEEEEeecCCcceEe
Confidence 3445555556778899999999987665543
No 452
>PLN02962 hydroxyacylglutathione hydrolase
Probab=21.41 E-value=1.8e+02 Score=21.09 Aligned_cols=29 Identities=7% Similarity=0.037 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecCh
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSI 62 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~ 62 (202)
-+...+.+.+.+.+..+..+..++-||..
T Consensus 165 g~~~~l~~Sl~~~l~~L~~~~~i~PGHg~ 193 (251)
T PLN02962 165 GSSDQLYKSVHSQIFTLPKDTLIYPAHDY 193 (251)
T ss_pred CCHHHHHHHHHHHHHcCCCCeEEECCCCC
Confidence 35566666776666667666678899985
No 453
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=21.38 E-value=93 Score=19.86 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=23.5
Q ss_pred HHhcCCceEEEecChhhHHHHHHHHhCcccccceeEeccc
Q 028885 48 KDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNIS 87 (202)
Q Consensus 48 ~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~ 87 (202)
..+..+++.++|- ||+--.......-..++.+.+++-.
T Consensus 8 ~~l~~~~vlviGa--Gg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 8 GDLKGKRVLVIGA--GGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp STGTTSEEEEESS--SHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCcCCCEEEEECC--HHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3566678999997 4433333333333468888888864
No 454
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=21.27 E-value=1.4e+02 Score=23.54 Aligned_cols=35 Identities=11% Similarity=0.117 Sum_probs=27.9
Q ss_pred CceEEEecChhhHHHHHHHHhCcccccceeEeccch
Q 028885 53 DQAFFICNSIGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
.+++|+|-.+||+.+..-..+.+ .=-.+++++...
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~ 38 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRD 38 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCC
Confidence 57999999999999999888876 323378888763
No 455
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=21.17 E-value=3.6e+02 Score=20.14 Aligned_cols=48 Identities=15% Similarity=0.363 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHHHHH-hCcc---cccceeEeccchh
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQAAV-MEPE---ICRGMILLNISLR 89 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~-~~p~---~v~~lvli~~~~~ 89 (202)
-++.+.+.+++. .+++.++. .|.+.-+..+. .+|+ +|+.++++++...
T Consensus 102 A~~~l~~~~~~~-~~~vtiva--iGPLTNlA~al~~~P~i~~~ik~iviMGG~~~ 153 (304)
T cd02650 102 AADFLIELANEY-PGELTLVA--VGPLTNLALALARDPDFAKLVKQVVVMGGAFT 153 (304)
T ss_pred HHHHHHHHHHhC-CCCeEEEE--CCcHHHHHHHHHHCcHHHhhcCEEEEeCcccc
Confidence 445555555544 35788884 55554444443 3565 6889999998754
No 456
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=21.13 E-value=80 Score=22.14 Aligned_cols=25 Identities=32% Similarity=0.138 Sum_probs=14.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecCh
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNSI 62 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S~ 62 (202)
.||-+-.++.+ +++| -+.+++|||=
T Consensus 67 a~TGevS~~mL----kd~G-~~~viiGHSE 91 (205)
T TIGR00419 67 AHTGEISAEML----KDIG-AKGTLINHSE 91 (205)
T ss_pred CccCcCCHHHH----HHcC-CCEEEECccc
Confidence 44544444433 3444 4789999983
No 457
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=20.96 E-value=1.9e+02 Score=22.66 Aligned_cols=42 Identities=14% Similarity=0.286 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCceEEEecChhhHHHHHHHHhCcccccceeEecc
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGGLVGLQAAVMEPEICRGMILLNI 86 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~lvli~~ 86 (202)
.+...++....++++++|- |.+++.+|....+.=..+.++..
T Consensus 127 ~~~~~l~~~~~~~vvViGg---G~~g~e~A~~l~~~g~~Vtli~~ 168 (427)
T TIGR03385 127 AIKQYIDKNKVENVVIIGG---GYIGIEMAEALRERGKNVTLIHR 168 (427)
T ss_pred HHHHHHhhcCCCeEEEECC---CHHHHHHHHHHHhCCCcEEEEEC
Confidence 3444444444578999984 45555555443333334666654
No 458
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=20.92 E-value=1.4e+02 Score=20.40 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=15.8
Q ss_pred HHHHHHHHhcCCceEEEecChhhH
Q 028885 42 QLNDFCKDVVKDQAFFICNSIGGL 65 (202)
Q Consensus 42 ~l~~~~~~l~~~~~~lvG~S~Gg~ 65 (202)
....+.+.+...+.+++=||+||.
T Consensus 72 ~~~~ir~~le~~d~~~i~~slgGG 95 (192)
T smart00864 72 SLDEIREELEGADGVFITAGMGGG 95 (192)
T ss_pred HHHHHHHHhcCCCEEEEeccCCCC
Confidence 344444555555788888999873
No 459
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=20.90 E-value=2.8e+02 Score=19.34 Aligned_cols=14 Identities=21% Similarity=0.273 Sum_probs=11.7
Q ss_pred cCCcceEEEeccCC
Q 028885 3 LAKSHRVYSIDLIG 16 (202)
Q Consensus 3 L~~~~~v~~~D~~G 16 (202)
++++|.++.+|-+|
T Consensus 100 l~~~~D~viIEg~g 113 (222)
T PRK00090 100 LAQQYDLVLVEGAG 113 (222)
T ss_pred HHhhCCEEEEECCC
Confidence 45679999999888
No 460
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=20.85 E-value=85 Score=22.67 Aligned_cols=24 Identities=29% Similarity=0.142 Sum_probs=14.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCCceEEEecC
Q 028885 33 FYTFETWASQLNDFCKDVVKDQAFFICNS 61 (202)
Q Consensus 33 ~~~~~~~~~~l~~~~~~l~~~~~~lvG~S 61 (202)
.+|-+-.++. ++++| -+.+++|||
T Consensus 70 a~TGevS~~m----L~d~G-~~~viiGHS 93 (242)
T cd00311 70 AFTGEISAEM----LKDAG-AKYVIIGHS 93 (242)
T ss_pred CCcCcCCHHH----HHHcC-CCEEEeCcc
Confidence 3454444443 34554 478999999
No 461
>PRK07411 hypothetical protein; Validated
Probab=20.84 E-value=1.8e+02 Score=22.72 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=28.1
Q ss_pred HhcCCceEEEecC-hhhHHHHHHHHhCcccccceeEeccch
Q 028885 49 DVVKDQAFFICNS-IGGLVGLQAAVMEPEICRGMILLNISL 88 (202)
Q Consensus 49 ~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvli~~~~ 88 (202)
.+...+|.++|-+ +|+.++..++.. -|..+++++.-.
T Consensus 35 ~L~~~~VlivG~GGlG~~va~~La~~---Gvg~l~lvD~D~ 72 (390)
T PRK07411 35 RLKAASVLCIGTGGLGSPLLLYLAAA---GIGRIGIVDFDV 72 (390)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHc---CCCEEEEECCCE
Confidence 4555689999988 577777777655 589999999863
No 462
>PRK10116 universal stress protein UspC; Provisional
Probab=20.71 E-value=66 Score=20.35 Aligned_cols=19 Identities=5% Similarity=0.186 Sum_probs=14.9
Q ss_pred cccCCCCCcceEEeecCCC
Q 028885 178 EELLPQVKVSFFKLDQIHN 196 (202)
Q Consensus 178 ~~~l~~i~~Pvl~i~G~~D 196 (202)
...+.+.+||||++--+.|
T Consensus 124 ~~v~~~~~~pVLvv~~~~~ 142 (142)
T PRK10116 124 KRVIASSEVDVLLVPLTGD 142 (142)
T ss_pred HHHHhcCCCCEEEEeCCCC
Confidence 4567889999999976655
No 463
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=20.65 E-value=1.9e+02 Score=16.79 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhc--CC--ceEEEecChh
Q 028885 37 ETWASQLNDFCKDVV--KD--QAFFICNSIG 63 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~--~~--~~~lvG~S~G 63 (202)
......|..+.+.+. .. .+.|.||+-.
T Consensus 11 ~~~~~~L~~l~~~l~~~~~~~~i~I~G~td~ 41 (97)
T PF00691_consen 11 PESQEQLDELAKILKYPGNKDQIEIEGHTDS 41 (97)
T ss_dssp HHHHHHHHHHHHHHHSTTSTTEEEEEEEEES
T ss_pred HHHHHHHHHHHHHHhCcCCCCeEEEEEEEcC
Confidence 444445555555544 23 4999999664
No 464
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=20.61 E-value=1.1e+02 Score=21.59 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=15.7
Q ss_pred CceEEEecChhhHHHHHHH
Q 028885 53 DQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 53 ~~~~lvG~S~Gg~~a~~~a 71 (202)
+...++|.|.|+++.....
T Consensus 116 ~G~v~~G~SAGA~i~~~~~ 134 (217)
T cd03145 116 GGVVIGGTSAGAAVMSDTM 134 (217)
T ss_pred cCCEEEEccHHHHhhhhcc
Confidence 5688999999999976653
No 465
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=20.60 E-value=1.9e+02 Score=21.33 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecCh
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSI 62 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~ 62 (202)
++.+...+-+..+.+.|..+.+.++|||=
T Consensus 215 Fd~~~q~~il~~f~~~L~~gG~LflG~sE 243 (268)
T COG1352 215 FDEETQERILRRFADSLKPGGLLFLGHSE 243 (268)
T ss_pred eCHHHHHHHHHHHHHHhCCCCEEEEccCc
Confidence 46677778888888999999999999984
No 466
>PF07812 TfuA: TfuA-like protein; InterPro: IPR012924 This domain consists of a group of sequences that are similar to the core of TfuA protein (Q52872 from SWISSPROT). This protein is involved in the production of trifolitoxin (TFX), a gene-encoded, post-translationally modified peptide antibiotic []. The role of TfuA in TFX synthesis is unknown, and it may be involved in other cellular processes [].
Probab=20.54 E-value=2.1e+02 Score=18.21 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=16.8
Q ss_pred HHHHhcCCceEEEecChhhHHHHHHHH
Q 028885 46 FCKDVVKDQAFFICNSIGGLVGLQAAV 72 (202)
Q Consensus 46 ~~~~l~~~~~~lvG~S~Gg~~a~~~a~ 72 (202)
++..+...=.++-+-|||+.=|.++..
T Consensus 15 IL~Al~~Gv~V~GasSMGALRAaEl~~ 41 (120)
T PF07812_consen 15 ILWALSQGVRVFGASSMGALRAAELAP 41 (120)
T ss_pred HHHHHHCCCEEEecccHHHHHHHHhHh
Confidence 344454444556667899877777663
No 467
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=20.51 E-value=44 Score=23.98 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=11.9
Q ss_pred CCCCCcceEEeecCCCCC
Q 028885 181 LPQVKVSFFKLDQIHNMP 198 (202)
Q Consensus 181 l~~i~~Pvl~i~G~~D~p 198 (202)
|..+.||+++|=|..|.|
T Consensus 85 L~~~~~p~~~vPG~~Dap 102 (255)
T PF14582_consen 85 LGELGVPVFVVPGNMDAP 102 (255)
T ss_dssp HHCC-SEEEEE--TTS-S
T ss_pred HHhcCCcEEEecCCCCch
Confidence 466889999999999954
No 468
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=20.43 E-value=3.8e+02 Score=20.14 Aligned_cols=57 Identities=11% Similarity=0.052 Sum_probs=41.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCCceEEEecC-hhhHHHHHHHHhCcc-cccceeEeccch
Q 028885 32 PFYTFETWASQLNDFCKDVVKDQAFFICNS-IGGLVGLQAAVMEPE-ICRGMILLNISL 88 (202)
Q Consensus 32 ~~~~~~~~~~~l~~~~~~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~-~v~~lvli~~~~ 88 (202)
...|.++..+-++.+++..+.+-.+++|.+ .+-.-+.+++...-+ .+++++++.|..
T Consensus 56 ~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~Gad~vlv~~P~y 114 (309)
T cd00952 56 ATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLGADGTMLGRPMW 114 (309)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhCCCEEEECCCcC
Confidence 568999999999999998876656677776 466677777665444 477777777753
No 469
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=20.19 E-value=2.1e+02 Score=20.55 Aligned_cols=39 Identities=10% Similarity=0.119 Sum_probs=29.3
Q ss_pred HHhcCCceEEEecC-hhhHHHHHHHHhCcccccceeEeccchh
Q 028885 48 KDVVKDQAFFICNS-IGGLVGLQAAVMEPEICRGMILLNISLR 89 (202)
Q Consensus 48 ~~l~~~~~~lvG~S-~Gg~~a~~~a~~~p~~v~~lvli~~~~~ 89 (202)
+.+...++.++|-. .|+.++..++.. -|..+++++....
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~---Gvg~i~lvD~D~v 59 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA---GVGNLTLLDFDTV 59 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc---CCCEEEEEeCCcc
Confidence 45666789999976 577777777765 4889999988633
No 470
>PF08799 PRP4: pre-mRNA processing factor 4 (PRP4) like; InterPro: IPR014906 This small protein is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing. ; PDB: 1MZW_B 2DK4_A.
Probab=20.12 E-value=38 Score=15.49 Aligned_cols=18 Identities=0% Similarity=-0.018 Sum_probs=8.4
Q ss_pred HHHHhcCCceEEEecChhh
Q 028885 46 FCKDVVKDQAFFICNSIGG 64 (202)
Q Consensus 46 ~~~~l~~~~~~lvG~S~Gg 64 (202)
-+.+++ +|+.++|.|-..
T Consensus 4 ~LR~lg-ePi~lFGE~~~~ 21 (30)
T PF08799_consen 4 RLRELG-EPITLFGETDAD 21 (30)
T ss_dssp HHHHCT---SCETT--HHH
T ss_pred HHHhcC-CChhhhCCChHH
Confidence 345554 678888877543
No 471
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=20.04 E-value=1.7e+02 Score=21.89 Aligned_cols=30 Identities=20% Similarity=0.244 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHHhcCCceEEE-ecChhh
Q 028885 35 TFETWASQLNDFCKDVVKDQAFFI-CNSIGG 64 (202)
Q Consensus 35 ~~~~~~~~l~~~~~~l~~~~~~lv-G~S~Gg 64 (202)
..+...+|+.+++++.+.++++++ =-|.|.
T Consensus 130 ~~e~~~~DI~~f~~~~~~d~vVvvn~asTE~ 160 (295)
T PF07994_consen 130 QVEQIREDIRDFKKENGLDRVVVVNVASTER 160 (295)
T ss_dssp HHHHHHHHHHHHHHHTT-SCEEEEE-SSCC-
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEECCCCCC
Confidence 456677999999999999887765 445555
No 472
>TIGR01608 citD citrate lyase acyl carrier protein. This is a model of the acyl carrier protein (aka gamma subunit) of the holoenzyme citrate lyase (EC 4.1.3.6) composed of alpha (EC 2.8.3.10), beta (EC 4.1.3.34), and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The acyl carrier protein covalently binds the coenzyme of citrate lyase. The seed contains an experimentally characterized member from Leuconostoc mesenteroides. The model covers a wide range of Gram positive bacteria. For Gram negative bacteria, it appears that only gamma proteobacteria hit this model. The model is quite robust with queries scoring either quite well or quite poorly against the model. There are currently no hits in-between the noise cutoff and trusted cutoff.
Probab=20.04 E-value=2.2e+02 Score=17.14 Aligned_cols=31 Identities=16% Similarity=0.055 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCceEEEecChhhHHHHH
Q 028885 39 WASQLNDFCKDVVKDQAFFICNSIGGLVGLQ 69 (202)
Q Consensus 39 ~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~ 69 (202)
+.+-+.+.+++++.+.+.+.-..-|+.=...
T Consensus 45 Ir~~v~etL~~lgV~~~~v~v~DkGALDc~I 75 (92)
T TIGR01608 45 IESTVKETLKLLGVENAVVKVVDKGALNCVI 75 (92)
T ss_pred HHHHHHHHHHHcCCceEEEEEEeCChHHHHH
Confidence 3445667788899999999999999865443
No 473
>PRK05665 amidotransferase; Provisional
Probab=20.03 E-value=2e+02 Score=20.74 Aligned_cols=38 Identities=8% Similarity=0.173 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHhcCCceEEEecChhhHHHHHHH
Q 028885 34 YTFETWASQLNDFCKDVVKDQAFFICNSIGGLVGLQAA 71 (202)
Q Consensus 34 ~~~~~~~~~l~~~~~~l~~~~~~lvG~S~Gg~~a~~~a 71 (202)
+....|...+.++++..-....=++|.++|..+.....
T Consensus 71 ~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~Al 108 (240)
T PRK05665 71 FGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLL 108 (240)
T ss_pred cccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHh
Confidence 44456777788888776444556899999997776655
No 474
>PTZ00387 epsilon tubulin; Provisional
Probab=20.02 E-value=2.2e+02 Score=22.97 Aligned_cols=28 Identities=21% Similarity=0.447 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhcCCceEEEecChhh
Q 028885 37 ETWASQLNDFCKDVVKDQAFFICNSIGG 64 (202)
Q Consensus 37 ~~~~~~l~~~~~~l~~~~~~lvG~S~Gg 64 (202)
+...+.++..++..+.=.-+++=||+||
T Consensus 115 d~~~d~Ir~~~E~cD~l~gf~i~~slgG 142 (465)
T PTZ00387 115 DSISESVRRQVEQCDSLQSFFLMHSLGG 142 (465)
T ss_pred HHHHHHHHHHHHhccCcceEEEEeecCC
Confidence 3444444455554443344456677765
No 475
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=20.01 E-value=3.4e+02 Score=21.65 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=14.3
Q ss_pred ceEEEecChhhHH--------HHHHHHhCccccc
Q 028885 54 QAFFICNSIGGLV--------GLQAAVMEPEICR 79 (202)
Q Consensus 54 ~~~lvG~S~Gg~~--------a~~~a~~~p~~v~ 79 (202)
.-+++=||+||.. .-.+...||+.+.
T Consensus 131 ~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~ 164 (431)
T cd02188 131 EGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLI 164 (431)
T ss_pred ceeEEEecCCCCcchhHHHHHHHHHHhHcCccee
Confidence 4566677776532 3334455776543
Done!