BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028887
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3E9C3|RH58_ARATH DEAD-box ATP-dependent RNA helicase 58, chloroplastic
OS=Arabidopsis thaliana GN=RH58 PE=2 SV=1
Length = 472
Score = 218 bits (554), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 103/128 (80%), Positives = 115/128 (89%), Gaps = 3/128 (2%)
Query: 67 LTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL 126
LTLR++CQG VPEH+L RMEE G+V PTDIQREALP LF+ RDCILHAQTGSGKTLTYLL
Sbjct: 73 LTLRQICQGFVPEHILHRMEEIGFVFPTDIQREALPTLFTGRDCILHAQTGSGKTLTYLL 132
Query: 127 LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGML 186
LIFSL+N QRS+VQAVIVVPTRELGMQVTKVAR+LAAK ++++ K CTVMALLDGG L
Sbjct: 133 LIFSLINPQRSSVQAVIVVPTRELGMQVTKVARMLAAK---SEIDVKGCTVMALLDGGTL 189
Query: 187 RRHKSWLK 194
RRHKSWLK
Sbjct: 190 RRHKSWLK 197
>sp|Q0JFN7|RH58_ORYSJ DEAD-box ATP-dependent RNA helicase 58, chloroplastic OS=Oryza
sativa subsp. japonica GN=Os01g0970600 PE=2 SV=2
Length = 438
Score = 186 bits (472), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 104/127 (81%), Gaps = 9/127 (7%)
Query: 68 TLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLL 127
TLRE+C G VPEHVL+R EE GYV+PT++Q ++LPVL S +DCILHAQTGSGKTL YLL
Sbjct: 39 TLREVCAGRVPEHVLQRAEEVGYVVPTEVQEQSLPVLLSGQDCILHAQTGSGKTLAYLLS 98
Query: 128 IFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLR 187
+FS ++ RS+VQA++VVPTRELGMQVTKVAR+LAAK CTVMALLDGGMLR
Sbjct: 99 VFSAIDFGRSSVQALVVVPTRELGMQVTKVARILAAKA---------CTVMALLDGGMLR 149
Query: 188 RHKSWLK 194
R KSW+K
Sbjct: 150 RQKSWVK 156
>sp|Q6H874|RH47A_ORYSJ DEAD-box ATP-dependent RNA helicase 47A OS=Oryza sativa subsp.
japonica GN=Os02g0636300 PE=2 SV=1
Length = 573
Score = 77.4 bits (189), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 22/169 (13%)
Query: 38 SISLKPLRAVLSSSAVSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQ 97
S + KP+++ L SAV + L + + + + +P ++ R+ + G PT++Q
Sbjct: 101 SFNAKPVKSALPKSAVLKKTLK--IDESLFSAKSFEELGLPPLLIDRLNKEGLTAPTEVQ 158
Query: 98 REALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA-----------QRSAVQAVIVVP 146
A+P++ D ++ + TGSGKTL YLL I S + +RS V+AVIV P
Sbjct: 159 SAAIPIISQKHDAVIQSYTGSGKTLAYLLPILSEIGPLKRPTEQDSSDKRSGVEAVIVAP 218
Query: 147 TRELGMQVTK-VARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLK 194
+RELGMQ+ + V ++L P D L V L+ G R + LK
Sbjct: 219 SRELGMQIVREVEKILG--PNDKRL------VQQLVGGANRSRQEEALK 259
>sp|Q8W4E1|RH47_ARATH DEAD-box ATP-dependent RNA helicase 47, mitochondrial
OS=Arabidopsis thaliana GN=RH47 PE=1 SV=2
Length = 551
Score = 76.6 bits (187), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 13/93 (13%)
Query: 77 VPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLV---- 132
+P+ +L +E G+ +PTD+Q A+P + D ++ + TGSGKTL YLL I S +
Sbjct: 117 LPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAVIQSYTGSGKTLAYLLPILSEIGPLA 176
Query: 133 ---------NAQRSAVQAVIVVPTRELGMQVTK 156
N +R+ +QA+IV P+RELGMQ+ +
Sbjct: 177 EKSRSSHSENDKRTEIQAMIVAPSRELGMQIVR 209
>sp|Q10PV9|RH47B_ORYSJ DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp.
japonica GN=Os03g0219700 PE=2 SV=1
Length = 573
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 85/169 (50%), Gaps = 22/169 (13%)
Query: 38 SISLKPLRAVLSSSAVSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQ 97
S + KP ++ L SAV + L + + + + +P ++ R+ + G PT++Q
Sbjct: 101 SFNSKPAKSTLPKSAVVKKTLK--IDESLFSAKSFEELGLPPLLIDRLNKEGLSTPTEVQ 158
Query: 98 REALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA-----------QRSAVQAVIVVP 146
A+P++ D ++ + TGSGKTL YLL I S + +RS V+AVIV P
Sbjct: 159 SAAIPIISQKHDAVIQSYTGSGKTLAYLLPILSEIGPLKRPTEQDGSDKRSGVEAVIVAP 218
Query: 147 TRELGMQVTK-VARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLK 194
+RELGMQ+ + V ++L P D L V L+ G R + LK
Sbjct: 219 SRELGMQIVREVEKILG--PNDKRL------VQQLVGGANRSRQEEALK 259
>sp|Q54E49|DDX6_DICDI Probable ATP-dependent RNA helicase ddx6 OS=Dictyostelium
discoideum GN=ddx6 PE=3 SV=1
Length = 423
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 54 STEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILH 113
TE++ A GN+ L H+ +LR + E GYV P+ IQ +A+P+ + RD +
Sbjct: 39 QTEDVTATEGNDFDDL------HLKRDLLRGIFEKGYVKPSPIQEKAIPIALAGRDIMAR 92
Query: 114 AQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT ++L+ + + +Q +I+VPTREL +Q ++V + L
Sbjct: 93 AKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELG 141
>sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8 OS=Arabidopsis thaliana
GN=RH8 PE=2 SV=1
Length = 505
Score = 73.9 bits (180), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 73/149 (48%), Gaps = 23/149 (15%)
Query: 17 VNHKLSSPNSIDFTNRAFLPVSISLKPLRAVLSSSAVSTEELAAGTGN---NSLTLRELC 73
V ++ PNS D+ R LP + TE++ A GN + REL
Sbjct: 95 VQSEVIDPNSEDWKARLKLPAP-----------DTRYRTEDVTATKGNEFEDYFLKRELL 143
Query: 74 QGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN 133
G + E G+ P+ IQ E++P+ + RD + A+ G+GKT + + + ++
Sbjct: 144 MG---------IYEKGFERPSPIQEESIPIALTGRDILARAKNGTGKTAAFCIPVLEKID 194
Query: 134 AQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ +QAVI+VPTREL +Q ++V + L
Sbjct: 195 QDNNVIQAVIIVPTRELALQTSQVCKELG 223
>sp|Q62780|DDX46_RAT Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus
GN=Ddx46 PE=1 SV=1
Length = 1032
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L +++ GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>sp|Q5R6D8|DDX46_PONAB Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46
PE=2 SV=1
Length = 1032
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L +++ GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>sp|Q569Z5|DDX46_MOUSE Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46
PE=1 SV=2
Length = 1032
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L +++ GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>sp|Q7L014|DDX46_HUMAN Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46
PE=1 SV=2
Length = 1031
Score = 72.4 bits (176), Expect = 2e-12, Method: Composition-based stats.
Identities = 38/93 (40%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + +L +++ GY PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 371 IKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 430
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QRS + AVI+ PTREL +Q+TK
Sbjct: 431 FRHIMDQRSLEEGEGPIAVIMTPTRELALQITK 463
>sp|Q84TG1|RH57_ARATH DEAD-box ATP-dependent RNA helicase 57 OS=Arabidopsis thaliana
GN=RH57 PE=2 SV=1
Length = 541
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 59/110 (53%), Gaps = 14/110 (12%)
Query: 62 TGNN---------SLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCIL 112
+GNN L+ R C+G++ LR + E G+ PT IQR+A+P+L S R+C
Sbjct: 128 SGNNIPPPLKSFAELSSRYGCEGYI----LRNLAELGFKEPTPIQRQAIPILLSGRECFA 183
Query: 113 HAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
A TGSGKT ++ ++ L ++AVI+ P REL Q + + L
Sbjct: 184 CAPTGSGKTFAFICPMLIKLKRPSTDGIRAVILSPARELAAQTAREGKKL 233
>sp|Q5K5B6|RH57_ORYSJ DEAD-box ATP-dependent RNA helicase 57 OS=Oryza sativa subsp.
japonica GN=Os07g0647900 PE=2 SV=2
Length = 540
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 48/75 (64%), Gaps = 1/75 (1%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL-LIFSLVNAQRSAVQAVIVVPT 147
G+ PT IQR+A+P+L S R+C A TGSGKTL +L ++ + + V+AVI+ PT
Sbjct: 165 GFQEPTPIQRQAIPILLSGRECFACAPTGSGKTLAFLFPILMKIKPGSKEGVKAVILCPT 224
Query: 148 RELGMQVTKVARVLA 162
REL Q T+ + LA
Sbjct: 225 RELAAQTTRECKKLA 239
>sp|Q6C0X2|DHH1_YARLI ATP-dependent RNA helicase DHH1 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DHH1 PE=3 SV=1
Length = 522
Score = 70.5 bits (171), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 63/112 (56%), Gaps = 12/112 (10%)
Query: 54 STEELAA--GTGNNSLTL-RELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDC 110
TE++ A GTG L REL G + E G+ P+ IQ EA+P+ + RD
Sbjct: 18 KTEDVTATKGTGFEDFFLKRELLMG---------IFEAGFENPSPIQEEAIPIALAGRDI 68
Query: 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ A+ G+GKT +++ VN + + +QA+I+VPTREL +Q ++V + L
Sbjct: 69 LARAKNGTGKTAAFVIPALQQVNPKVNKIQALIMVPTRELALQTSQVCKTLG 120
>sp|A6RY31|DHH1_BOTFB ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain
B05.10) GN=dhh1 PE=3 SV=1
Length = 538
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E GY P+ IQ EA+PV + RD + A+ G+GKT +++ +N + + VQ +I+VP
Sbjct: 64 EMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVP 123
Query: 147 TRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLR 187
TREL +Q ++V + L +H VM G LR
Sbjct: 124 TRELALQTSQVCKTLG--------QHLGINVMVTTGGTTLR 156
>sp|Q0UR48|HAS1_PHANO ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=HAS1 PE=3 SV=1
Length = 610
Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 19/128 (14%)
Query: 56 EELAAGTGNNSLTLRELCQG---------------HVPEHVLRRMEETGYVLPTDIQREA 100
+E AAG+G N+L + +L G ++ E + ++ G+ T+IQR+A
Sbjct: 102 DEDAAGSGANALAVADLPSGTSIPTVDDPTRFDELNLSERTMEAIKTMGFESMTEIQRKA 161
Query: 101 LPVLFSSRDCILHAQTGSGKTLTYLL----LIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156
+P L S +D + A+TGSGKTL +L+ ++ S+ R+ ++V PTREL +Q+
Sbjct: 162 IPPLLSGKDVLGAAKTGSGKTLAFLIPAIEMLSSMRFKPRNGTGVIVVSPTRELALQIFG 221
Query: 157 VARVLAAK 164
VAR L K
Sbjct: 222 VARELMEK 229
>sp|Q7S5D9|DHH1_NEUCR ATP-dependent RNA helicase dhh-1 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=dhh-1 PE=3 SV=2
Length = 505
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ + +N + S +Q +I+VP
Sbjct: 62 EAGFEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALNKINPKVSKIQCLILVP 121
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 122 TRELAMQTSQVCKTLG 137
>sp|Q5AAW3|DHH1_CANAL ATP-dependent RNA helicase DHH1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DHH1 PE=3 SV=1
Length = 549
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 50/76 (65%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ + RD + A+ G+GKT ++++ LV + + VQA+I+VP
Sbjct: 47 EAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVP 106
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 107 TRELALQTSQVVRTLG 122
>sp|A7TGU7|DHH1_VANPO ATP-dependent RNA helicase DHH1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DHH1 PE=3 SV=1
Length = 484
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 54 STEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILH 113
TE++ + GN T + ++ +L + E G+ P+ IQ E++PV + RD +
Sbjct: 24 QTEDVLSTKGN---TFEDF---YLKRELLMGIFEAGFEKPSPIQEESIPVALAGRDILAR 77
Query: 114 AQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT +++ V ++ + +QA+I+VPTREL +Q ++V R L
Sbjct: 78 AKNGTGKTAAFVIPTLEKVKSKHNKIQALIMVPTRELALQTSQVVRTLG 126
>sp|Q0U7S9|DHH1_PHANO ATP-dependent RNA helicase DHH1 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=DHH1 PE=3 SV=1
Length = 522
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 44 LRAVLSSSAVSTEELAAGTG---NNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREA 100
L+A + TE++ A G + REL G + E G+ P+ IQ E
Sbjct: 29 LKAPAKDARPQTEDVTATKGLEFEDFFIKRELMMG---------IFEAGFEKPSPIQEET 79
Query: 101 LPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARV 160
+PV + RD + A+ G+GKT +++ VN + S QA+I+VPTREL +Q ++V +
Sbjct: 80 IPVALTGRDILARAKNGTGKTAAFVIPTLERVNPKISKTQALILVPTRELALQTSQVCKT 139
Query: 161 LA 162
L
Sbjct: 140 LG 141
>sp|Q94BV4|RH6_ARATH DEAD-box ATP-dependent RNA helicase 6 OS=Arabidopsis thaliana
GN=RH6 PE=2 SV=2
Length = 528
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 61/109 (55%), Gaps = 6/109 (5%)
Query: 54 STEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILH 113
TE++ A GN E + +LR + E G+ P+ IQ E++P+ + D +
Sbjct: 144 QTEDVTATKGN------EFEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILAR 197
Query: 114 AQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT + + ++ + + +QAVI+VPTREL +Q ++V + L+
Sbjct: 198 AKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELS 246
>sp|Q09181|DHH1_SCHPO Putative ATP-dependent RNA helicase ste13 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ste13 PE=3 SV=1
Length = 485
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 56/101 (55%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++P+ S RD + A+ G+GKT +++ V+ ++S +Q +I+VP
Sbjct: 61 EAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVP 120
Query: 147 TRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLR 187
TREL +Q ++V + L +H VM G LR
Sbjct: 121 TRELALQTSQVCKTLG--------KHMNVKVMVTTGGTTLR 153
>sp|A5DF03|PRP28_PICGU Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Meyerozyma
guilliermondii (strain ATCC 6260 / CBS 566 / DSM 6381 /
JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PRP28 PE=3 SV=2
Length = 575
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 19/153 (12%)
Query: 30 TNRAFLPVS--ISLKPLRAVLSSS-AVSTEELAAGTGNNSLT--LRELCQGHVPEHVLRR 84
+N FLP S K L + S + E+ + N++ LR + +P +L
Sbjct: 105 SNNDFLPAEEHWSDKKLEDMTSRDWRIFKEDFSITCKGNNIPNPLRSWKESGIPTTLLNT 164
Query: 85 MEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA---------- 134
+++ GY PT IQR A+P RD + A+TGSGKTL +L+ + S ++A
Sbjct: 165 IDQLGYKEPTPIQRAAIPTALGHRDVVGIAETGSGKTLAFLIPLLSYLSAIDKDYMEVEH 224
Query: 135 -QRSAVQAV---IVVPTRELGMQVTKVARVLAA 163
Q S + V ++ PTREL +Q++K A+ A+
Sbjct: 225 KQESNLNKVLGLVLAPTRELALQISKEAKKFAS 257
>sp|A4R715|DHH1_MAGO7 ATP-dependent RNA helicase DHH1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DHH1 PE=3 SV=2
Length = 535
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 64 EAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVP 123
Query: 147 TRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLR 187
TREL MQ ++V + L +H VM G LR
Sbjct: 124 TRELAMQTSQVCKTLG--------KHLGINVMVTTGGTTLR 156
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 5/100 (5%)
Query: 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
+RE PE+VL+ + + G+V PT IQ + P+ RD I A+TGSGKTL YLL
Sbjct: 90 VREFRDVGFPEYVLQEITKAGFVEPTPIQSQGWPMALRGRDLIGIAETGSGKTLAYLLPA 149
Query: 129 FSLVNAQ-----RSAVQAVIVVPTRELGMQVTKVARVLAA 163
VNAQ +++ PTREL +Q+ + A A
Sbjct: 150 IVHVNAQPILAPGDGPIVLVLAPTRELAVQIQQEATKFGA 189
>sp|Q4HW67|DHH1_GIBZE ATP-dependent RNA helicase DHH1 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DHH1 PE=3
SV=1
Length = 486
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++PV + RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 59 EAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKISKIQCLILVP 118
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 119 TRELAMQTSQVCKTLG 134
>sp|Q75BS4|DHH1_ASHGO ATP-dependent RNA helicase DHH1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DHH1
PE=3 SV=1
Length = 484
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 49/76 (64%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+P+ + RD + A+ G+GKT +++ +V + + +QA+I+VP
Sbjct: 46 EAGFERPSPIQEEAIPIALARRDILARAKNGTGKTAAFVIPTLEIVKPKVNKIQALIMVP 105
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 106 TRELALQTSQVVRTLG 121
>sp|Q0IHV9|DDX6_XENTR Probable ATP-dependent RNA helicase ddx6 OS=Xenopus tropicalis
GN=ddx6 PE=2 SV=1
Length = 481
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 53 VSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCIL 112
+ T ++ + GN + C + +L + E G+ P+ IQ E++P+ S RD +
Sbjct: 84 IKTSDVTSTKGNE---FEDYC---LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA 137
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158
A+ G+GK+ YL+ + ++ ++ +QA+++VPTREL +QV+++
Sbjct: 138 RAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQIC 183
>sp|Q1EA54|HAS1_COCIM ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis (strain RS)
GN=HAS1 PE=3 SV=1
Length = 604
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 79 EHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA---- 134
E L+ ++E G+ T+IQR +P L + RD + A+TGSGKTL++L+ +++A
Sbjct: 133 EKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFLIPAVEMLSALRFK 192
Query: 135 QRSAVQAVIVVPTRELGMQVTKVARVLAA 163
R+ ++V PTREL +Q+ VAR L A
Sbjct: 193 PRNGTGVIVVSPTRELALQIFGVARELMA 221
>sp|P54824|DDX6_XENLA ATP-dependent RNA helicase ddx6 OS=Xenopus laevis GN=ddx6 PE=1 SV=2
Length = 481
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 53 VSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCIL 112
+ T ++ + GN + C + +L + E G+ P+ IQ E++P+ S RD +
Sbjct: 84 IKTSDVTSTKGNE---FEDYC---LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA 137
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158
A+ G+GK+ YL+ + ++ ++ +QA+++VPTREL +QV+++
Sbjct: 138 RAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQIC 183
>sp|A4R8B5|HAS1_MAGO7 ATP-dependent RNA helicase HAS1 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=HAS1 PE=3 SV=2
Length = 587
Score = 67.4 bits (163), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 76 HVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLL----LIFSL 131
++ E+ ++ +EE G+ T+IQR +P L + +D + A+TGSGKTL +L+ ++ SL
Sbjct: 118 NLSENTMKAIEEMGFTKMTEIQRRGIPPLLAGKDVLGAAKTGSGKTLAFLIPAVEMLRSL 177
Query: 132 VNAQRSAVQAVIVVPTRELGMQVTKVARVL 161
R+ ++V PTREL +Q+ VAR L
Sbjct: 178 KFKPRNGTGVIVVSPTRELALQIFGVARDL 207
>sp|Q6H7S2|RH8_ORYSJ DEAD-box ATP-dependent RNA helicase 8 OS=Oryza sativa subsp.
japonica GN=Os02g0641800 PE=2 SV=2
Length = 508
Score = 67.4 bits (163), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 55 TEELAAGTGN---NSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCI 111
TE++ A GN + REL G + E G+ P+ IQ E++P+ + D +
Sbjct: 125 TEDVTATKGNEFEDYFLKRELLMG---------IYEKGFERPSPIQEESIPIALTGSDIL 175
Query: 112 LHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT + + ++ +++A+Q VI+VPTREL +Q ++V + L
Sbjct: 176 ARAKNGTGKTAAFCIPALEKIDQEKNAIQVVILVPTRELALQTSQVCKELG 226
>sp|Q4TVV3|DDX46_DANRE Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46
PE=2 SV=1
Length = 1018
Score = 67.4 bits (163), Expect = 7e-11, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLI 128
++ Q + VL +++ Y PT IQ +A+P + S RD I A+TGSGKT+ +LL +
Sbjct: 339 IKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPM 398
Query: 129 FSLVNAQRSAVQ-----AVIVVPTRELGMQVTK 156
F + QR + AVI+ PTREL +Q+TK
Sbjct: 399 FRHILDQRPVGEAEGPLAVIMTPTRELALQITK 431
>sp|P39517|DHH1_YEAST ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DHH1 PE=1 SV=1
Length = 506
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ V + + +QA+I+VP
Sbjct: 63 EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 122
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 123 TRELALQTSQVVRTLG 138
>sp|A6ZXG9|DHH1_YEAS7 ATP-dependent RNA helicase DHH1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DHH1 PE=3 SV=1
Length = 506
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ EA+PV + RD + A+ G+GKT +++ V + + +QA+I+VP
Sbjct: 63 EAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVP 122
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V R L
Sbjct: 123 TRELALQTSQVVRTLG 138
>sp|Q109G2|RH12_ORYSJ DEAD-box ATP-dependent RNA helicase 12 OS=Oryza sativa subsp.
japonica GN=Os10g0503700 PE=2 SV=2
Length = 521
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 55 TEELAAGTGN---NSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCI 111
TE++ A GN + REL G + E G+ P+ IQ E++P+ + D +
Sbjct: 138 TEDVTATKGNEFEDYFLKRELLMG---------IYEKGFERPSPIQEESIPIALTGSDIL 188
Query: 112 LHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
A+ G+GKT + + ++ +++A+Q VI+VPTREL +Q ++V + L
Sbjct: 189 ARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELG 239
>sp|Q5L3G9|CSHA_GEOKA DEAD-box ATP-dependent RNA helicase CshA OS=Geobacillus
kaustophilus (strain HTA426) GN=cshA PE=3 SV=1
Length = 467
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 51/78 (65%)
Query: 79 EHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSA 138
+ V++ +E G+ T IQ + +P+ ++D I AQTG+GKT + + I VN + SA
Sbjct: 11 QEVMKAIERMGFEETTPIQAKTIPLSLQNKDVIGQAQTGTGKTAAFGIPIVEKVNVKNSA 70
Query: 139 VQAVIVVPTRELGMQVTK 156
VQA++V PTREL +QV++
Sbjct: 71 VQALVVAPTRELAIQVSE 88
>sp|P54823|DDX6_MOUSE Probable ATP-dependent RNA helicase DDX6 OS=Mus musculus GN=Ddx6
PE=2 SV=1
Length = 483
Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 53 VSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCIL 112
+ T ++ + GN + C + +L + E G+ P+ IQ E++P+ S RD +
Sbjct: 85 IKTSDVTSTKGNE---FEDYC---LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA 138
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157
A+ G+GK+ YL+ + ++ ++ +QA+++VPTREL +QV+++
Sbjct: 139 RAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQI 183
>sp|P26196|DDX6_HUMAN Probable ATP-dependent RNA helicase DDX6 OS=Homo sapiens GN=DDX6
PE=1 SV=2
Length = 483
Score = 66.6 bits (161), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 53 VSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCIL 112
+ T ++ + GN + C + +L + E G+ P+ IQ E++P+ S RD +
Sbjct: 85 IKTSDVTSTKGNE---FEDYC---LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA 138
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158
A+ G+GK+ YL+ + ++ ++ +QA+++VPTREL +QV+++
Sbjct: 139 RAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQIC 184
>sp|Q5ZKB9|DDX6_CHICK Probable ATP-dependent RNA helicase DDX6 OS=Gallus gallus GN=DDX6
PE=2 SV=1
Length = 483
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 62/105 (59%), Gaps = 6/105 (5%)
Query: 53 VSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCIL 112
+ T ++ + GN + C + +L + E G+ P+ IQ E++P+ S RD +
Sbjct: 85 IKTSDVTSTKGNE---FEDYC---LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA 138
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157
A+ G+GK+ YL+ + ++ ++ +QA+++VPTREL +QV+++
Sbjct: 139 RAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQI 183
>sp|Q5RFQ5|DDX6_PONAB Probable ATP-dependent RNA helicase DDX6 OS=Pongo abelii GN=DDX6
PE=2 SV=1
Length = 483
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 62/106 (58%), Gaps = 6/106 (5%)
Query: 53 VSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCIL 112
+ T ++ + GN + C + +L + E G+ P+ IQ E++P+ S RD +
Sbjct: 85 IKTSDVTSTKGNE---FEDYC---LKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA 138
Query: 113 HAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158
A+ G+GK+ YL+ + ++ ++ +QA+++VPTREL +QV+++
Sbjct: 139 RAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQIC 184
>sp|A5DY34|DRS1_LODEL ATP-dependent RNA helicase DRS1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DRS1 PE=3 SV=1
Length = 686
Score = 66.6 bits (161), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/111 (33%), Positives = 60/111 (54%), Gaps = 5/111 (4%)
Query: 54 STEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILH 113
S E + + S T +EL + +L+ +++ G+ +PT +Q +P+ +D +
Sbjct: 183 SQETNTSASALKSKTFQEL---QLSRPILKSLQQLGFTVPTPVQASTIPIALLGKDIVAS 239
Query: 114 AQTGSGKTLTYLLLIFS--LVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
AQTGSGKT YL+ I L ++ +A+I+ PTREL +QV V R L
Sbjct: 240 AQTGSGKTAAYLIPIIERLLYVKNSTSTKAIILTPTRELAIQVHDVGRKLG 290
>sp|Q2GQ93|DHH1_CHAGB ATP-dependent RNA helicase DHH1 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DHH1 PE=3 SV=1
Length = 512
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 47/76 (61%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E++PV RD + A+ G+GKT +++ +N + S +Q +I+VP
Sbjct: 28 EAGFEKPSPIQEESIPVALVGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQCLILVP 87
Query: 147 TRELGMQVTKVARVLA 162
TREL MQ ++V + L
Sbjct: 88 TRELAMQTSQVCKTLG 103
>sp|Q58Z64|DHH1_CRYNH ATP-dependent RNA helicase VAD1 OS=Cryptococcus neoformans var.
grubii serotype A (strain H99 / ATCC 208821 / CBS 10515
/ FGSC 9487) GN=VAD1 PE=2 SV=1
Length = 616
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G+ P+ IQ +A+P+ + RD + A+ G+GKT ++++ + +N S +QA+I+VPTR
Sbjct: 55 GFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTR 114
Query: 149 ELGMQVTKVARVLAA 163
EL +Q ++V + L A
Sbjct: 115 ELALQTSQVCKTLGA 129
>sp|Q2U5A2|DHH1_ASPOR ATP-dependent RNA helicase dhh1 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dhh1 PE=3 SV=1
Length = 511
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 62/119 (52%), Gaps = 6/119 (5%)
Query: 44 LRAVLSSSAVSTEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPV 103
L+A + TE++ A G E ++ ++ + E G+ P+ IQ E +PV
Sbjct: 27 LKAPAKDARPQTEDVTATKG------LEFEDFYIKRELMMGIFEAGFEKPSPIQEETIPV 80
Query: 104 LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162
+ RD + A+ G+GKT +++ +N + + QA+I+VPTREL +Q + V + L
Sbjct: 81 ALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLG 139
>sp|P0CQ80|DHH1_CRYNJ ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DHH1 PE=3 SV=1
Length = 625
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G+ P+ IQ +A+P+ + RD + A+ G+GKT ++++ + +N S +QA+I+VPTR
Sbjct: 55 GFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTR 114
Query: 149 ELGMQVTKVARVLAA 163
EL +Q ++V + L A
Sbjct: 115 ELALQTSQVCKTLGA 129
>sp|P0CQ81|DHH1_CRYNB ATP-dependent RNA helicase DHH1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DHH1 PE=3 SV=1
Length = 625
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 50/75 (66%)
Query: 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148
G+ P+ IQ +A+P+ + RD + A+ G+GKT ++++ + +N S +QA+I+VPTR
Sbjct: 55 GFERPSPIQEQAIPMALTGRDILARAKNGTGKTASFIIPTLNRINTSLSHIQALILVPTR 114
Query: 149 ELGMQVTKVARVLAA 163
EL +Q ++V + L A
Sbjct: 115 ELALQTSQVCKTLGA 129
>sp|Q8K4L0|DDX54_MOUSE ATP-dependent RNA helicase DDX54 OS=Mus musculus GN=Ddx54 PE=1 SV=1
Length = 874
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 53/84 (63%), Gaps = 2/84 (2%)
Query: 81 VLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ--RSA 138
V + + + GY +PT IQR+ +PV+ +D + A+TGSGKT +LL +F + A+ ++
Sbjct: 106 VFKGIMKKGYKVPTPIQRKTIPVILDGKDVVAMARTGSGKTACFLLPMFERLKARSAQTG 165
Query: 139 VQAVIVVPTRELGMQVTKVARVLA 162
+A+I+ PTREL +Q K + L
Sbjct: 166 ARALILSPTRELALQTMKFTKELG 189
>sp|A1D8G1|DHH1_NEOFI ATP-dependent RNA helicase dhh1 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dhh1
PE=3 SV=1
Length = 507
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E +PV + RD + A+ G+GKT +++ +N + + QA+I+VP
Sbjct: 64 EAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVP 123
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V + L
Sbjct: 124 TRELALQTSQVCKTLG 139
>sp|Q4WWD3|DHH1_ASPFU ATP-dependent RNA helicase dhh1 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dhh1
PE=3 SV=1
Length = 507
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146
E G+ P+ IQ E +PV + RD + A+ G+GKT +++ +N + + QA+I+VP
Sbjct: 64 EAGFEKPSPIQEETIPVALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVP 123
Query: 147 TRELGMQVTKVARVLA 162
TREL +Q ++V + L
Sbjct: 124 TRELALQTSQVCKTLG 139
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.132 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 67,857,906
Number of Sequences: 539616
Number of extensions: 2459571
Number of successful extensions: 8906
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 140
Number of HSP's that attempted gapping in prelim test: 7168
Number of HSP's gapped (non-prelim): 1246
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)