Query 028887
Match_columns 202
No_of_seqs 236 out of 1970
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 06:09:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028887.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028887hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fmo_B ATP-dependent RNA helic 99.9 3E-23 1E-27 174.3 9.2 120 60-186 82-203 (300)
2 3fe2_A Probable ATP-dependent 99.9 6.3E-22 2.2E-26 160.6 12.8 121 66-194 25-150 (242)
3 2db3_A ATP-dependent RNA helic 99.9 9E-22 3.1E-26 172.6 13.5 120 67-194 53-177 (434)
4 3ber_A Probable ATP-dependent 99.9 3.3E-21 1.1E-25 157.5 14.0 117 68-192 41-157 (249)
5 1vec_A ATP-dependent RNA helic 99.9 5.2E-21 1.8E-25 150.8 12.9 113 71-190 4-116 (206)
6 2oxc_A Probable ATP-dependent 99.9 4.6E-21 1.6E-25 154.4 12.3 113 70-189 24-136 (230)
7 3bor_A Human initiation factor 99.9 2.1E-21 7.3E-26 157.1 10.1 115 69-191 29-143 (237)
8 3iuy_A Probable ATP-dependent 99.9 5.1E-21 1.7E-25 153.5 12.1 114 71-193 20-140 (228)
9 2pl3_A Probable ATP-dependent 99.8 1.6E-20 5.5E-25 151.3 14.1 117 67-191 22-142 (236)
10 1t6n_A Probable ATP-dependent 99.8 1.8E-20 6.3E-25 149.3 13.7 116 71-193 15-130 (220)
11 1qde_A EIF4A, translation init 99.8 5.9E-21 2E-25 152.5 10.3 113 69-189 13-125 (224)
12 1wrb_A DJVLGB; RNA helicase, D 99.8 4.8E-21 1.6E-25 156.1 8.6 118 68-193 21-147 (253)
13 1q0u_A Bstdead; DEAD protein, 99.8 1.4E-20 4.9E-25 150.2 11.1 113 71-187 5-117 (219)
14 2i4i_A ATP-dependent RNA helic 99.8 2.8E-20 9.7E-25 160.4 13.8 118 68-193 13-148 (417)
15 3ly5_A ATP-dependent RNA helic 99.8 3.2E-20 1.1E-24 152.6 13.2 109 77-193 61-173 (262)
16 2gxq_A Heat resistant RNA depe 99.8 6.4E-20 2.2E-24 144.4 13.4 112 72-193 3-117 (207)
17 3dkp_A Probable ATP-dependent 99.8 1.8E-20 6.3E-25 151.8 9.6 103 63-165 21-125 (245)
18 2j0s_A ATP-dependent RNA helic 99.8 8.1E-20 2.8E-24 157.6 12.4 117 70-194 37-153 (410)
19 3fht_A ATP-dependent RNA helic 99.8 2E-19 6.8E-24 154.5 11.7 111 55-165 10-122 (412)
20 3fmp_B ATP-dependent RNA helic 99.8 6.8E-20 2.3E-24 161.9 8.1 103 63-165 85-189 (479)
21 1xti_A Probable ATP-dependent 99.8 5E-19 1.7E-23 151.2 13.0 118 70-194 8-125 (391)
22 3sqw_A ATP-dependent RNA helic 99.8 1.7E-18 5.7E-23 156.8 15.6 128 63-194 13-147 (579)
23 1s2m_A Putative ATP-dependent 99.8 7.4E-19 2.5E-23 150.9 12.0 112 70-189 21-132 (400)
24 1fuu_A Yeast initiation factor 99.8 8.2E-19 2.8E-23 149.8 11.5 114 71-192 22-135 (394)
25 3eiq_A Eukaryotic initiation f 99.8 1E-18 3.6E-23 150.3 12.0 117 68-192 38-154 (414)
26 3i5x_A ATP-dependent RNA helic 99.8 3.8E-18 1.3E-22 153.4 15.3 126 64-193 65-197 (563)
27 3pey_A ATP-dependent RNA helic 99.8 2.1E-18 7.2E-23 147.0 11.1 96 70-165 5-102 (395)
28 1hv8_A Putative ATP-dependent 99.7 9.6E-18 3.3E-22 141.6 12.5 113 71-192 7-120 (367)
29 2z0m_A 337AA long hypothetical 99.7 6.3E-17 2.2E-21 135.2 14.0 100 77-190 1-100 (337)
30 3oiy_A Reverse gyrase helicase 99.7 2.8E-16 9.5E-21 136.1 10.9 91 83-186 12-103 (414)
31 3fho_A ATP-dependent RNA helic 99.6 1.9E-16 6.3E-21 141.5 4.8 98 68-165 117-216 (508)
32 2ykg_A Probable ATP-dependent 99.6 3.7E-15 1.3E-19 136.9 11.5 101 83-191 4-106 (696)
33 2zj8_A DNA helicase, putative 99.6 5.6E-15 1.9E-19 136.9 10.9 89 72-163 3-93 (720)
34 2v1x_A ATP-dependent DNA helic 99.6 9.2E-15 3.1E-19 133.0 12.0 82 74-161 25-107 (591)
35 1oyw_A RECQ helicase, ATP-depe 99.6 3.4E-15 1.2E-19 134.0 8.9 86 71-162 3-89 (523)
36 3tbk_A RIG-I helicase domain; 99.6 1.1E-14 3.9E-19 129.2 11.9 90 92-189 4-95 (555)
37 2va8_A SSO2462, SKI2-type heli 99.6 7.2E-15 2.5E-19 135.9 11.0 90 72-163 10-100 (715)
38 1gm5_A RECG; helicase, replica 99.6 1.5E-14 5.1E-19 135.2 12.8 103 81-195 358-466 (780)
39 4a2p_A RIG-I, retinoic acid in 99.6 9.2E-15 3.1E-19 130.1 10.9 93 89-189 4-98 (556)
40 4ddu_A Reverse gyrase; topoiso 99.6 1E-14 3.5E-19 140.9 11.3 87 87-186 74-160 (1104)
41 1tf5_A Preprotein translocase 99.5 1.3E-14 4.5E-19 135.2 10.4 89 87-189 79-167 (844)
42 1gku_B Reverse gyrase, TOP-RG; 99.5 2.3E-14 7.8E-19 137.9 12.2 100 86-198 52-155 (1054)
43 4a2q_A RIG-I, retinoic acid in 99.5 2.5E-14 8.5E-19 134.0 11.7 95 87-189 243-339 (797)
44 2p6r_A Afuhel308 helicase; pro 99.5 2.4E-15 8.3E-20 138.9 4.5 84 77-163 10-93 (702)
45 3l9o_A ATP-dependent RNA helic 99.5 3.1E-14 1.1E-18 137.5 6.9 86 75-163 167-252 (1108)
46 3b6e_A Interferon-induced heli 99.5 1.2E-13 4.1E-18 108.6 8.8 76 89-164 30-109 (216)
47 2fsf_A Preprotein translocase 99.5 9.1E-14 3.1E-18 129.4 8.5 86 88-187 71-156 (853)
48 4a2w_A RIG-I, retinoic acid in 99.5 1.5E-13 5E-18 131.0 9.4 94 88-189 244-339 (936)
49 1nkt_A Preprotein translocase 99.4 5.2E-13 1.8E-17 124.8 9.7 87 87-187 107-193 (922)
50 2ipc_A Preprotein translocase 99.4 5.6E-13 1.9E-17 124.6 9.8 85 88-186 76-160 (997)
51 4f92_B U5 small nuclear ribonu 99.4 6.5E-13 2.2E-17 132.8 10.4 77 89-165 76-161 (1724)
52 4f92_B U5 small nuclear ribonu 99.4 6.7E-13 2.3E-17 132.7 10.4 87 76-163 910-997 (1724)
53 2xgj_A ATP-dependent RNA helic 99.4 1.1E-12 3.7E-17 125.8 11.4 73 87-163 82-154 (1010)
54 4gl2_A Interferon-induced heli 99.4 4.9E-13 1.7E-17 122.8 7.8 87 92-187 7-97 (699)
55 2oca_A DAR protein, ATP-depend 99.4 1.4E-12 4.8E-17 115.7 9.4 71 92-164 113-183 (510)
56 1rif_A DAR protein, DNA helica 99.4 2.1E-12 7.2E-17 106.6 9.6 71 92-164 113-183 (282)
57 2eyq_A TRCF, transcription-rep 99.4 8.3E-12 2.9E-16 121.1 14.4 86 76-165 587-679 (1151)
58 4a4z_A Antiviral helicase SKI2 99.3 3.4E-12 1.2E-16 122.3 10.8 73 87-163 35-107 (997)
59 1wp9_A ATP-dependent RNA helic 99.3 1.6E-11 5.3E-16 106.2 11.5 86 92-189 9-94 (494)
60 2fwr_A DNA repair protein RAD2 99.3 1.3E-11 4.5E-16 108.4 9.9 64 92-161 93-156 (472)
61 2jlq_A Serine protease subunit 99.3 9.9E-13 3.4E-17 115.8 2.3 70 89-161 1-71 (451)
62 3llm_A ATP-dependent RNA helic 99.2 3.4E-11 1.1E-15 96.9 9.3 87 78-164 47-135 (235)
63 2wv9_A Flavivirin protease NS2 99.2 5.3E-13 1.8E-17 123.1 -1.8 75 85-161 203-293 (673)
64 2whx_A Serine protease/ntpase/ 99.2 2.2E-12 7.6E-17 117.9 1.4 80 77-159 157-236 (618)
65 3crv_A XPD/RAD3 related DNA he 99.2 2.2E-11 7.6E-16 109.7 7.4 70 89-165 1-74 (551)
66 2fz4_A DNA repair protein RAD2 99.2 1.3E-10 4.4E-15 94.0 10.0 64 92-161 93-156 (237)
67 4a15_A XPD helicase, ATP-depen 99.2 3.9E-11 1.3E-15 109.7 7.1 84 92-185 3-90 (620)
68 2vl7_A XPD; helicase, unknown 99.0 5.1E-10 1.7E-14 100.7 8.3 67 88-161 4-74 (540)
69 2z83_A Helicase/nucleoside tri 99.0 1.1E-10 3.8E-15 102.9 3.7 57 102-160 16-72 (459)
70 1yks_A Genome polyprotein [con 99.0 1.5E-10 5.2E-15 101.6 3.9 57 103-161 4-60 (440)
71 2v6i_A RNA helicase; membrane, 98.9 9.7E-10 3.3E-14 96.2 4.9 52 106-159 1-52 (431)
72 2xau_A PRE-mRNA-splicing facto 98.9 2E-09 6.9E-14 100.7 7.2 91 69-162 71-164 (773)
73 3h1t_A Type I site-specific re 98.9 1.3E-09 4.3E-14 98.6 4.5 72 92-163 178-261 (590)
74 2w00_A HSDR, R.ECOR124I; ATP-b 98.8 4.5E-09 1.5E-13 100.9 7.4 72 92-164 271-356 (1038)
75 3o8b_A HCV NS3 protease/helica 98.8 7.2E-10 2.5E-14 101.8 1.8 66 93-164 218-283 (666)
76 3rc3_A ATP-dependent RNA helic 98.7 3E-08 1E-12 91.4 7.5 51 105-162 153-203 (677)
77 1z63_A Helicase of the SNF2/RA 98.6 1.2E-07 4.2E-12 83.6 9.7 71 92-164 37-111 (500)
78 3dmq_A RNA polymerase-associat 98.5 1.7E-07 6E-12 89.5 8.4 70 92-163 153-224 (968)
79 3mwy_W Chromo domain-containin 98.3 2.2E-06 7.5E-11 80.3 9.8 72 92-164 236-311 (800)
80 1z3i_X Similar to RAD54-like; 98.3 4.8E-06 1.6E-10 76.3 10.6 72 92-164 55-139 (644)
81 3jux_A Protein translocase sub 98.2 4.2E-06 1.4E-10 77.4 9.7 81 88-182 72-152 (822)
82 1w36_D RECD, exodeoxyribonucle 98.2 2.3E-06 8E-11 77.9 6.7 67 94-161 151-219 (608)
83 4b3f_X DNA-binding protein smu 97.9 3.6E-05 1.2E-09 70.4 9.4 68 92-162 189-257 (646)
84 2gk6_A Regulator of nonsense t 97.7 0.00013 4.4E-09 66.5 8.7 70 90-161 178-247 (624)
85 2xzl_A ATP-dependent helicase 97.6 0.00018 6.2E-09 67.5 9.4 70 90-162 358-428 (802)
86 3lfu_A DNA helicase II; SF1 he 97.6 0.00024 8.2E-09 64.4 8.9 72 91-164 8-80 (647)
87 1c4o_A DNA nucleotide excision 97.4 0.00025 8.6E-09 65.2 7.3 69 89-164 6-79 (664)
88 2wjy_A Regulator of nonsense t 97.4 0.00038 1.3E-08 65.3 8.5 69 91-161 355-423 (800)
89 1uaa_A REP helicase, protein ( 97.2 0.00075 2.6E-08 61.8 8.0 71 92-164 2-73 (673)
90 3upu_A ATP-dependent DNA helic 97.2 0.0011 3.8E-08 58.0 8.3 70 87-158 20-94 (459)
91 3e1s_A Exodeoxyribonuclease V, 97.2 0.0013 4.3E-08 59.5 8.6 63 92-157 189-251 (574)
92 3u4q_A ATP-dependent helicase/ 97.0 0.0012 4.1E-08 64.6 7.9 69 92-162 10-81 (1232)
93 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0022 7.5E-08 59.4 9.1 71 91-163 10-81 (724)
94 2d7d_A Uvrabc system protein B 96.3 0.0079 2.7E-07 55.2 7.3 67 92-164 12-83 (661)
95 3ec2_A DNA replication protein 95.1 0.057 2E-06 40.4 6.8 33 94-126 16-57 (180)
96 3cpe_A Terminase, DNA packagin 95.0 0.12 4E-06 46.6 9.7 73 92-165 163-235 (592)
97 2o0j_A Terminase, DNA packagin 94.9 0.14 4.7E-06 43.9 9.3 72 92-164 163-234 (385)
98 2dr3_A UPF0273 protein PH0284; 93.1 0.14 4.6E-06 39.9 5.4 52 106-161 22-73 (247)
99 3co5_A Putative two-component 92.8 0.099 3.4E-06 37.8 3.9 21 104-124 24-44 (143)
100 3vkw_A Replicase large subunit 92.5 0.098 3.4E-06 45.7 4.1 45 109-161 163-207 (446)
101 3n70_A Transport activator; si 92.4 0.12 4.1E-06 37.5 3.8 21 105-125 22-42 (145)
102 2orw_A Thymidine kinase; TMTK, 92.2 0.2 7E-06 38.0 5.1 39 107-148 3-41 (184)
103 2zts_A Putative uncharacterize 91.3 0.22 7.5E-06 38.7 4.5 51 107-161 30-81 (251)
104 2b8t_A Thymidine kinase; deoxy 91.0 0.18 6.1E-06 39.9 3.7 40 106-148 11-50 (223)
105 1xx6_A Thymidine kinase; NESG, 91.0 0.23 7.9E-06 38.2 4.2 40 106-148 7-46 (191)
106 1e9r_A Conjugal transfer prote 90.6 0.34 1.2E-05 41.5 5.4 44 106-152 52-95 (437)
107 2w58_A DNAI, primosome compone 90.5 0.45 1.6E-05 35.9 5.5 25 108-133 55-79 (202)
108 2qgz_A Helicase loader, putati 90.1 0.57 2E-05 38.5 6.2 20 107-126 152-171 (308)
109 3bh0_A DNAB-like replicative h 90.0 0.85 2.9E-05 37.5 7.2 51 105-159 66-116 (315)
110 3u4q_B ATP-dependent helicase/ 90.0 0.42 1.4E-05 46.4 6.0 51 111-162 5-55 (1166)
111 2w0m_A SSO2452; RECA, SSPF, un 90.0 0.74 2.5E-05 35.1 6.4 52 106-161 22-73 (235)
112 2z43_A DNA repair and recombin 88.7 0.48 1.6E-05 39.1 4.7 55 107-161 107-165 (324)
113 3bos_A Putative DNA replicatio 88.7 0.57 2E-05 35.8 4.9 20 106-125 51-70 (242)
114 3b85_A Phosphate starvation-in 88.3 0.49 1.7E-05 36.7 4.2 35 91-125 6-40 (208)
115 1jbk_A CLPB protein; beta barr 87.3 0.3 1E-05 35.7 2.4 19 107-125 43-61 (195)
116 3hjh_A Transcription-repair-co 87.0 0.81 2.8E-05 40.3 5.3 52 106-163 13-64 (483)
117 1kgd_A CASK, peripheral plasma 86.9 0.29 1E-05 36.6 2.2 21 106-126 4-24 (180)
118 1ofh_A ATP-dependent HSL prote 86.9 1.6 5.5E-05 34.8 6.8 20 106-125 49-68 (310)
119 1l8q_A Chromosomal replication 86.8 1 3.5E-05 36.7 5.6 19 107-125 37-55 (324)
120 2r44_A Uncharacterized protein 86.8 0.37 1.3E-05 39.5 2.9 24 101-124 40-63 (331)
121 2bjv_A PSP operon transcriptio 86.7 0.56 1.9E-05 37.1 3.8 19 106-124 28-46 (265)
122 1lvg_A Guanylate kinase, GMP k 86.3 0.36 1.2E-05 36.8 2.4 21 106-126 3-23 (198)
123 2chg_A Replication factor C sm 85.9 2.6 8.9E-05 31.3 7.2 17 108-124 39-55 (226)
124 2p65_A Hypothetical protein PF 85.9 0.31 1.1E-05 35.7 1.8 19 107-125 43-61 (187)
125 2kjq_A DNAA-related protein; s 85.9 0.82 2.8E-05 33.3 4.1 21 106-126 35-55 (149)
126 3nbx_X ATPase RAVA; AAA+ ATPas 85.7 0.49 1.7E-05 41.8 3.3 30 95-124 29-58 (500)
127 2i1q_A DNA repair and recombin 85.7 0.93 3.2E-05 37.1 4.8 54 108-161 99-166 (322)
128 3syl_A Protein CBBX; photosynt 85.6 0.37 1.2E-05 38.9 2.3 19 107-125 67-85 (309)
129 2ehv_A Hypothetical protein PH 85.4 1.1 3.9E-05 34.5 5.0 24 105-128 28-51 (251)
130 1w4r_A Thymidine kinase; type 85.4 0.71 2.4E-05 35.7 3.7 39 106-147 19-57 (195)
131 3hws_A ATP-dependent CLP prote 85.3 0.85 2.9E-05 38.0 4.4 19 106-124 50-68 (363)
132 3cf0_A Transitional endoplasmi 85.0 0.42 1.4E-05 39.0 2.3 19 106-124 48-66 (301)
133 2j9r_A Thymidine kinase; TK1, 84.9 1.1 3.7E-05 35.2 4.6 40 107-149 28-67 (214)
134 4ag6_A VIRB4 ATPase, type IV s 84.9 1.3 4.3E-05 37.4 5.4 43 106-151 34-76 (392)
135 3tau_A Guanylate kinase, GMP k 84.9 0.47 1.6E-05 36.4 2.5 20 106-125 7-26 (208)
136 1u94_A RECA protein, recombina 84.7 0.92 3.2E-05 38.2 4.4 37 107-146 63-99 (356)
137 3vaa_A Shikimate kinase, SK; s 84.7 0.49 1.7E-05 35.9 2.5 22 105-126 23-44 (199)
138 3b9p_A CG5977-PA, isoform A; A 84.7 0.44 1.5E-05 38.3 2.3 19 107-125 54-72 (297)
139 3h4m_A Proteasome-activating n 84.7 0.44 1.5E-05 38.0 2.3 20 106-125 50-69 (285)
140 2qz4_A Paraplegin; AAA+, SPG7, 84.7 0.46 1.6E-05 37.2 2.3 18 107-124 39-56 (262)
141 3nwn_A Kinesin-like protein KI 84.6 0.7 2.4E-05 39.1 3.6 22 103-124 99-122 (359)
142 2oap_1 GSPE-2, type II secreti 84.6 0.53 1.8E-05 41.7 3.0 38 85-124 239-277 (511)
143 2gza_A Type IV secretion syste 84.6 0.56 1.9E-05 39.5 3.0 21 104-124 172-192 (361)
144 2cvh_A DNA repair and recombin 84.6 1.3 4.3E-05 33.6 4.8 35 106-146 19-53 (220)
145 3te6_A Regulatory protein SIR3 84.6 0.36 1.2E-05 40.2 1.7 26 107-133 45-70 (318)
146 3io5_A Recombination and repai 84.5 1.1 3.7E-05 37.6 4.6 40 109-151 30-71 (333)
147 1nlf_A Regulatory protein REPA 84.5 1.7 6E-05 34.6 5.8 57 104-162 27-91 (279)
148 1g5t_A COB(I)alamin adenosyltr 84.3 1.3 4.5E-05 34.3 4.7 34 108-144 29-62 (196)
149 3iij_A Coilin-interacting nucl 84.2 0.41 1.4E-05 35.5 1.8 22 105-126 9-30 (180)
150 3hr8_A Protein RECA; alpha and 84.2 1 3.4E-05 38.1 4.4 38 107-147 61-98 (356)
151 3bgw_A DNAB-like replicative h 84.1 2.4 8.3E-05 36.7 6.9 39 106-147 196-234 (444)
152 1p9r_A General secretion pathw 84.1 1.6 5.4E-05 37.6 5.7 37 95-132 153-191 (418)
153 3tr0_A Guanylate kinase, GMP k 84.0 0.49 1.7E-05 35.6 2.2 20 106-125 6-25 (205)
154 4b4t_M 26S protease regulatory 83.9 0.46 1.6E-05 41.3 2.2 50 72-124 180-232 (434)
155 2zr9_A Protein RECA, recombina 83.9 1.2 4.2E-05 37.3 4.8 36 107-145 61-96 (349)
156 1bg2_A Kinesin; motor protein, 83.9 0.84 2.9E-05 38.1 3.7 22 103-124 72-95 (325)
157 3pfi_A Holliday junction ATP-d 83.8 2 6.8E-05 35.1 6.0 18 108-125 56-73 (338)
158 3uk6_A RUVB-like 2; hexameric 83.6 0.5 1.7E-05 39.1 2.2 19 107-125 70-88 (368)
159 1kag_A SKI, shikimate kinase I 83.4 0.67 2.3E-05 33.9 2.7 19 106-124 3-21 (173)
160 2j41_A Guanylate kinase; GMP, 83.3 0.54 1.9E-05 35.4 2.2 21 105-125 4-24 (207)
161 4b4t_J 26S protease regulatory 83.3 0.55 1.9E-05 40.5 2.4 18 107-124 182-199 (405)
162 2qor_A Guanylate kinase; phosp 83.3 0.51 1.8E-05 35.9 2.1 21 104-124 9-29 (204)
163 1ex7_A Guanylate kinase; subst 83.0 0.63 2.2E-05 35.6 2.4 17 108-124 2-18 (186)
164 2eyu_A Twitching motility prot 83.0 0.44 1.5E-05 38.3 1.6 21 104-124 22-42 (261)
165 3eie_A Vacuolar protein sortin 82.8 0.59 2E-05 38.4 2.4 17 108-124 52-68 (322)
166 1ojl_A Transcriptional regulat 82.8 0.89 3E-05 37.2 3.4 19 106-124 24-42 (304)
167 3dc4_A Kinesin-like protein NO 82.8 0.85 2.9E-05 38.4 3.3 21 104-124 90-112 (344)
168 1qhx_A CPT, protein (chloramph 82.8 0.64 2.2E-05 34.2 2.3 19 107-125 3-21 (178)
169 4a14_A Kinesin, kinesin-like p 82.8 0.98 3.3E-05 38.0 3.7 21 104-124 79-101 (344)
170 1lv7_A FTSH; alpha/beta domain 82.7 0.58 2E-05 36.8 2.2 17 108-124 46-62 (257)
171 2y65_A Kinesin, kinesin heavy 82.6 0.99 3.4E-05 38.3 3.7 21 104-124 80-102 (365)
172 2vvg_A Kinesin-2; motor protei 82.6 1 3.4E-05 38.0 3.7 21 104-124 85-107 (350)
173 3a00_A Guanylate kinase, GMP k 82.5 0.72 2.5E-05 34.6 2.6 18 107-124 1-18 (186)
174 1z6g_A Guanylate kinase; struc 82.5 0.73 2.5E-05 35.7 2.7 22 104-125 20-41 (218)
175 4a1f_A DNAB helicase, replicat 82.5 4.3 0.00015 33.9 7.6 50 105-158 44-93 (338)
176 3trf_A Shikimate kinase, SK; a 82.4 0.67 2.3E-05 34.4 2.3 20 107-126 5-24 (185)
177 2h58_A Kinesin-like protein KI 82.4 1 3.6E-05 37.6 3.7 25 100-124 72-98 (330)
178 3b6u_A Kinesin-like protein KI 82.3 1 3.4E-05 38.4 3.6 21 104-124 97-119 (372)
179 3gbj_A KIF13B protein; kinesin 82.3 1 3.4E-05 38.1 3.6 23 102-124 86-110 (354)
180 1d2n_A N-ethylmaleimide-sensit 82.2 0.58 2E-05 37.2 2.0 18 108-125 65-82 (272)
181 2pt7_A CAG-ALFA; ATPase, prote 82.2 0.7 2.4E-05 38.4 2.6 20 104-123 168-187 (330)
182 1zp6_A Hypothetical protein AT 82.2 0.56 1.9E-05 34.9 1.8 21 105-125 7-27 (191)
183 4b4t_L 26S protease subunit RP 82.2 0.59 2E-05 40.7 2.2 18 107-124 215-232 (437)
184 1xwi_A SKD1 protein; VPS4B, AA 82.0 0.64 2.2E-05 38.3 2.3 18 108-125 46-63 (322)
185 1goj_A Kinesin, kinesin heavy 82.0 1 3.4E-05 38.1 3.5 21 104-124 76-98 (355)
186 2nr8_A Kinesin-like protein KI 82.0 1 3.6E-05 38.0 3.6 23 102-124 97-121 (358)
187 1t5c_A CENP-E protein, centrom 81.9 1.1 3.6E-05 37.9 3.6 22 103-124 72-95 (349)
188 4b4t_K 26S protease regulatory 81.9 0.61 2.1E-05 40.4 2.2 18 107-124 206-223 (428)
189 2zfi_A Kinesin-like protein KI 81.9 1.1 3.7E-05 38.0 3.7 22 103-124 84-107 (366)
190 3lre_A Kinesin-like protein KI 81.8 1 3.5E-05 38.0 3.5 21 104-124 101-123 (355)
191 3ney_A 55 kDa erythrocyte memb 81.7 0.68 2.3E-05 35.8 2.2 21 105-125 17-37 (197)
192 3lw7_A Adenylate kinase relate 81.7 0.7 2.4E-05 33.4 2.2 17 109-125 3-19 (179)
193 1u0j_A DNA replication protein 81.7 3.6 0.00012 33.3 6.6 43 80-125 74-122 (267)
194 3t15_A Ribulose bisphosphate c 81.6 0.63 2.2E-05 37.8 2.1 17 108-124 37-53 (293)
195 4gp7_A Metallophosphoesterase; 81.6 0.62 2.1E-05 34.5 1.9 20 106-125 8-27 (171)
196 1njg_A DNA polymerase III subu 81.6 1.3 4.4E-05 33.4 3.8 16 109-124 47-62 (250)
197 1s96_A Guanylate kinase, GMP k 81.6 0.76 2.6E-05 35.9 2.5 23 104-126 13-35 (219)
198 1x88_A Kinesin-like protein KI 81.5 1 3.5E-05 38.1 3.4 22 103-124 83-106 (359)
199 1w36_B RECB, exodeoxyribonucle 81.5 2.5 8.4E-05 41.2 6.5 56 106-162 16-80 (1180)
200 1znw_A Guanylate kinase, GMP k 81.4 0.78 2.7E-05 35.0 2.4 23 103-125 16-38 (207)
201 4etp_A Kinesin-like protein KA 81.4 1 3.5E-05 38.7 3.4 25 100-124 132-158 (403)
202 1v5w_A DMC1, meiotic recombina 81.1 1.5 5.3E-05 36.4 4.4 55 107-161 122-180 (343)
203 3cmu_A Protein RECA, recombina 81.1 4.5 0.00015 41.7 8.3 47 101-150 1415-1467(2050)
204 3t0q_A AGR253WP; kinesin, alph 81.1 1 3.5E-05 37.9 3.3 25 100-124 77-103 (349)
205 1v8k_A Kinesin-like protein KI 81.0 1.1 3.7E-05 38.7 3.4 21 104-124 150-172 (410)
206 1xp8_A RECA protein, recombina 81.0 1.9 6.5E-05 36.5 4.9 37 107-146 74-110 (366)
207 3u06_A Protein claret segregat 80.9 1.1 3.7E-05 38.7 3.4 25 100-124 130-156 (412)
208 2wbe_C Bipolar kinesin KRP-130 80.7 1.1 3.8E-05 38.1 3.3 21 104-124 96-118 (373)
209 3cob_A Kinesin heavy chain-lik 80.7 1 3.4E-05 38.3 3.0 24 101-124 72-97 (369)
210 1kht_A Adenylate kinase; phosp 80.7 0.79 2.7E-05 33.9 2.2 18 107-124 3-20 (192)
211 4akg_A Glutathione S-transfera 80.6 5.4 0.00018 42.3 8.8 46 80-126 893-942 (2695)
212 2qp9_X Vacuolar protein sortin 80.4 0.87 3E-05 38.1 2.6 17 108-124 85-101 (355)
213 1um8_A ATP-dependent CLP prote 80.4 0.9 3.1E-05 38.0 2.7 19 107-125 72-90 (376)
214 2heh_A KIF2C protein; kinesin, 80.3 1.2 4.2E-05 38.1 3.5 21 104-124 130-152 (387)
215 1n0w_A DNA repair protein RAD5 80.3 2.2 7.6E-05 32.7 4.8 24 106-129 23-46 (243)
216 1f9v_A Kinesin-like protein KA 80.2 1.4 4.6E-05 37.2 3.7 25 100-124 76-102 (347)
217 2c9o_A RUVB-like 1; hexameric 80.2 0.79 2.7E-05 39.7 2.3 19 107-125 63-81 (456)
218 2qmh_A HPR kinase/phosphorylas 80.0 1 3.4E-05 35.2 2.6 22 106-127 33-54 (205)
219 2v1u_A Cell division control p 80.0 0.87 3E-05 37.5 2.4 19 107-125 44-62 (387)
220 2q6t_A DNAB replication FORK h 79.9 3.9 0.00013 35.2 6.6 50 106-158 199-248 (444)
221 3a8t_A Adenylate isopentenyltr 79.9 0.78 2.7E-05 38.6 2.1 20 108-127 41-60 (339)
222 2owm_A Nckin3-434, related to 79.8 1.4 4.7E-05 38.4 3.7 21 104-124 132-154 (443)
223 3cm0_A Adenylate kinase; ATP-b 79.7 0.65 2.2E-05 34.4 1.4 20 106-125 3-22 (186)
224 2r62_A Cell division protease 79.6 0.5 1.7E-05 37.4 0.8 19 107-125 44-62 (268)
225 2ze6_A Isopentenyl transferase 79.6 0.86 2.9E-05 36.2 2.2 18 109-126 3-20 (253)
226 4eun_A Thermoresistant glucoki 79.4 1 3.4E-05 34.1 2.5 20 106-125 28-47 (200)
227 1y63_A LMAJ004144AAA protein; 79.3 0.94 3.2E-05 33.8 2.2 20 106-125 9-28 (184)
228 1hqc_A RUVB; extended AAA-ATPa 79.3 0.82 2.8E-05 37.0 2.0 19 107-125 38-56 (324)
229 3vfd_A Spastin; ATPase, microt 79.2 0.9 3.1E-05 38.3 2.3 19 107-125 148-166 (389)
230 1sxj_D Activator 1 41 kDa subu 79.2 1.4 4.6E-05 36.0 3.4 17 108-124 59-75 (353)
231 4b4t_H 26S protease regulatory 79.0 0.78 2.7E-05 40.3 1.9 18 107-124 243-260 (467)
232 3bfn_A Kinesin-like protein KI 79.0 1.2 4.1E-05 38.1 3.0 32 93-124 75-116 (388)
233 3exa_A TRNA delta(2)-isopenten 78.9 0.9 3.1E-05 37.9 2.1 20 108-127 4-23 (322)
234 2z4s_A Chromosomal replication 78.8 2.3 7.9E-05 36.6 4.8 19 107-125 130-148 (440)
235 3foz_A TRNA delta(2)-isopenten 78.8 0.99 3.4E-05 37.6 2.4 19 109-127 12-30 (316)
236 2rep_A Kinesin-like protein KI 78.8 1.3 4.3E-05 37.8 3.1 23 102-124 109-133 (376)
237 1ly1_A Polynucleotide kinase; 78.6 1 3.4E-05 32.9 2.2 17 109-125 4-20 (181)
238 3d8b_A Fidgetin-like protein 1 78.6 0.96 3.3E-05 37.8 2.3 19 107-125 117-135 (357)
239 4fcw_A Chaperone protein CLPB; 78.4 0.96 3.3E-05 36.4 2.2 17 109-125 49-65 (311)
240 1knq_A Gluconate kinase; ALFA/ 78.4 0.91 3.1E-05 33.3 1.9 19 107-125 8-26 (175)
241 4b4t_I 26S protease regulatory 78.3 0.94 3.2E-05 39.4 2.1 18 107-124 216-233 (437)
242 3cmw_A Protein RECA, recombina 78.3 4.5 0.00015 41.0 7.2 50 108-163 1432-1481(1706)
243 2px0_A Flagellar biosynthesis 78.3 2.6 8.9E-05 34.4 4.8 22 107-128 105-126 (296)
244 1ixz_A ATP-dependent metallopr 78.2 1 3.4E-05 35.4 2.2 17 108-124 50-66 (254)
245 1g8p_A Magnesium-chelatase 38 78.2 0.71 2.4E-05 37.8 1.3 18 107-124 45-62 (350)
246 3kb2_A SPBC2 prophage-derived 78.1 0.99 3.4E-05 32.7 2.0 17 109-125 3-19 (173)
247 2r6a_A DNAB helicase, replicat 78.0 4.7 0.00016 34.8 6.5 39 106-147 202-241 (454)
248 2ius_A DNA translocase FTSK; n 77.7 3.1 0.00011 36.8 5.4 26 107-132 167-192 (512)
249 1tue_A Replication protein E1; 77.6 3.7 0.00013 32.1 5.2 23 109-132 60-82 (212)
250 2ewv_A Twitching motility prot 76.9 0.99 3.4E-05 38.2 1.9 20 105-124 134-153 (372)
251 2v54_A DTMP kinase, thymidylat 76.9 0.96 3.3E-05 33.9 1.6 20 106-125 3-22 (204)
252 1cr0_A DNA primase/helicase; R 76.7 3.2 0.00011 33.3 4.8 24 104-127 32-55 (296)
253 2rb4_A ATP-dependent RNA helic 76.7 11 0.00039 27.4 7.7 46 138-196 34-80 (175)
254 2qby_B CDC6 homolog 3, cell di 76.6 5.7 0.0002 32.6 6.6 17 108-124 46-62 (384)
255 2c95_A Adenylate kinase 1; tra 76.6 1.2 4.2E-05 33.0 2.2 20 105-124 7-26 (196)
256 2x8a_A Nuclear valosin-contain 76.3 1.2 4.1E-05 35.8 2.2 18 108-125 45-62 (274)
257 3uie_A Adenylyl-sulfate kinase 75.9 1.2 4.1E-05 33.7 1.9 32 93-125 12-43 (200)
258 1np6_A Molybdopterin-guanine d 75.8 5.1 0.00017 30.0 5.5 37 109-146 8-44 (174)
259 3lnc_A Guanylate kinase, GMP k 75.7 0.95 3.2E-05 35.0 1.4 20 105-124 25-44 (231)
260 2r8r_A Sensor protein; KDPD, P 75.7 3.4 0.00012 32.7 4.6 28 109-136 8-35 (228)
261 2zan_A Vacuolar protein sortin 75.5 1.3 4.5E-05 38.2 2.3 18 108-125 168-185 (444)
262 3jvv_A Twitching mobility prot 75.4 1.2 4E-05 37.6 1.9 19 106-124 122-140 (356)
263 2bdt_A BH3686; alpha-beta prot 75.0 1 3.5E-05 33.5 1.3 19 108-126 3-21 (189)
264 1iy2_A ATP-dependent metallopr 74.9 1.4 4.7E-05 35.2 2.2 17 108-124 74-90 (278)
265 2rhm_A Putative kinase; P-loop 74.9 1.3 4.4E-05 32.8 1.8 19 107-125 5-23 (193)
266 3nwj_A ATSK2; P loop, shikimat 74.7 1.8 6.3E-05 34.5 2.9 22 105-126 46-67 (250)
267 3hu3_A Transitional endoplasmi 74.4 1.5 5E-05 38.6 2.3 18 107-124 238-255 (489)
268 2bwj_A Adenylate kinase 5; pho 74.3 1.6 5.3E-05 32.5 2.2 20 105-124 10-29 (199)
269 3crm_A TRNA delta(2)-isopenten 74.3 1.5 5.3E-05 36.5 2.4 18 109-126 7-24 (323)
270 2qby_A CDC6 homolog 1, cell di 74.3 1.7 5.7E-05 35.7 2.6 19 107-125 45-63 (386)
271 3c8u_A Fructokinase; YP_612366 74.2 1.4 4.7E-05 33.6 1.9 19 106-124 21-39 (208)
272 1iqp_A RFCS; clamp loader, ext 74.2 2.2 7.6E-05 34.2 3.3 17 109-125 48-64 (327)
273 1tev_A UMP-CMP kinase; ploop, 74.0 1.4 4.7E-05 32.6 1.8 19 107-125 3-21 (196)
274 3t61_A Gluconokinase; PSI-biol 73.9 1.6 5.4E-05 32.9 2.2 18 108-125 19-36 (202)
275 1in4_A RUVB, holliday junction 73.8 1.6 5.6E-05 35.9 2.4 18 108-125 52-69 (334)
276 1xjc_A MOBB protein homolog; s 73.8 5.6 0.00019 29.8 5.2 25 109-134 6-30 (169)
277 2plr_A DTMP kinase, probable t 73.7 1.2 4.2E-05 33.4 1.5 20 106-125 3-22 (213)
278 1gvn_B Zeta; postsegregational 73.6 1.4 4.8E-05 35.7 1.9 18 108-125 34-51 (287)
279 3kl4_A SRP54, signal recogniti 73.5 6 0.0002 34.2 6.0 34 109-145 99-132 (433)
280 2r2a_A Uncharacterized protein 73.4 2.5 8.5E-05 32.5 3.2 22 109-130 7-28 (199)
281 1zd8_A GTP:AMP phosphotransfer 73.2 1.7 5.8E-05 33.5 2.3 19 106-124 6-24 (227)
282 2orv_A Thymidine kinase; TP4A 73.1 2.7 9.4E-05 33.4 3.4 41 106-149 18-58 (234)
283 1m7g_A Adenylylsulfate kinase; 73.1 1.9 6.5E-05 32.8 2.5 32 93-125 12-43 (211)
284 3asz_A Uridine kinase; cytidin 72.9 1.5 5.1E-05 33.2 1.8 19 106-124 5-23 (211)
285 1q57_A DNA primase/helicase; d 72.9 4.3 0.00015 35.4 5.0 49 106-158 241-290 (503)
286 3dm5_A SRP54, signal recogniti 72.7 6.1 0.00021 34.3 5.9 21 109-129 102-122 (443)
287 1ry6_A Internal kinesin; kines 72.6 2.7 9.2E-05 35.5 3.5 19 106-124 82-102 (360)
288 2hjv_A ATP-dependent RNA helic 72.5 11 0.00037 27.2 6.5 44 140-196 37-81 (163)
289 2iut_A DNA translocase FTSK; n 72.5 5.1 0.00017 36.0 5.4 26 108-133 215-240 (574)
290 3d3q_A TRNA delta(2)-isopenten 72.5 1.8 6.1E-05 36.4 2.3 18 109-126 9-26 (340)
291 3kta_A Chromosome segregation 72.5 1.7 6E-05 31.9 2.1 16 109-124 28-43 (182)
292 1vma_A Cell division protein F 72.5 4 0.00014 33.5 4.5 19 108-126 105-123 (306)
293 3qf7_A RAD50; ABC-ATPase, ATPa 72.3 1.7 5.8E-05 36.6 2.2 16 109-124 25-40 (365)
294 2yvu_A Probable adenylyl-sulfa 72.3 4.6 0.00016 29.8 4.5 21 106-126 12-32 (186)
295 1f2t_A RAD50 ABC-ATPase; DNA d 72.2 1.9 6.5E-05 31.3 2.2 16 109-124 25-40 (149)
296 3tif_A Uncharacterized ABC tra 72.2 2 6.7E-05 33.8 2.4 20 105-124 29-48 (235)
297 2pez_A Bifunctional 3'-phospho 72.0 1.7 5.8E-05 32.0 1.9 19 106-124 4-22 (179)
298 3e2i_A Thymidine kinase; Zn-bi 72.0 4 0.00014 32.0 4.1 41 106-149 27-67 (219)
299 1sxj_C Activator 1 40 kDa subu 71.8 3.8 0.00013 33.5 4.2 16 110-125 49-64 (340)
300 4a74_A DNA repair and recombin 71.8 2.1 7.2E-05 32.5 2.5 22 106-127 24-45 (231)
301 1fnn_A CDC6P, cell division co 71.8 1.9 6.4E-05 35.6 2.3 23 109-132 46-68 (389)
302 3pvs_A Replication-associated 71.6 1.8 6.1E-05 37.6 2.2 18 108-125 51-68 (447)
303 1ye8_A Protein THEP1, hypothet 71.6 2 6.7E-05 32.3 2.2 16 109-124 2-17 (178)
304 3bs4_A Uncharacterized protein 71.6 5.3 0.00018 32.1 4.9 52 107-162 21-72 (260)
305 3f9v_A Minichromosome maintena 71.5 2.3 7.8E-05 38.3 3.0 16 109-124 329-344 (595)
306 1zu4_A FTSY; GTPase, signal re 71.2 4.4 0.00015 33.4 4.5 19 108-126 106-124 (320)
307 3vkg_A Dynein heavy chain, cyt 71.2 12 0.00041 40.4 8.4 47 79-126 875-925 (3245)
308 3k1j_A LON protease, ATP-depen 71.1 3.2 0.00011 37.2 3.9 23 103-125 56-78 (604)
309 2iyv_A Shikimate kinase, SK; t 71.1 2.4 8.2E-05 31.2 2.6 18 108-125 3-20 (184)
310 1via_A Shikimate kinase; struc 70.9 2.3 7.9E-05 31.1 2.4 17 109-125 6-22 (175)
311 1nks_A Adenylate kinase; therm 70.9 2 6.8E-05 31.6 2.1 17 109-125 3-19 (194)
312 1fuk_A Eukaryotic initiation f 70.9 16 0.00054 26.3 7.1 44 140-196 32-76 (165)
313 3eph_A TRNA isopentenyltransfe 70.8 2 6.7E-05 37.1 2.3 18 109-126 4-21 (409)
314 2wwf_A Thymidilate kinase, put 70.8 2 6.9E-05 32.3 2.1 20 106-125 9-28 (212)
315 1aky_A Adenylate kinase; ATP:A 70.7 2.3 7.8E-05 32.5 2.4 19 107-125 4-22 (220)
316 3pxg_A Negative regulator of g 70.7 2.1 7E-05 37.2 2.4 25 107-132 201-225 (468)
317 2qt1_A Nicotinamide riboside k 70.7 1.2 4.1E-05 33.7 0.8 21 105-125 19-39 (207)
318 1nn5_A Similar to deoxythymidy 70.7 1.9 6.4E-05 32.5 1.9 21 106-126 8-28 (215)
319 4h1g_A Maltose binding protein 70.6 2.8 9.5E-05 38.5 3.4 25 100-124 454-480 (715)
320 2cdn_A Adenylate kinase; phosp 70.5 1.7 5.8E-05 32.7 1.6 19 107-125 20-38 (201)
321 3cmw_A Protein RECA, recombina 70.4 6 0.00021 40.1 5.9 38 107-147 34-71 (1706)
322 1e6c_A Shikimate kinase; phosp 70.3 2.4 8.3E-05 30.7 2.4 18 108-125 3-20 (173)
323 1zak_A Adenylate kinase; ATP:A 70.3 2.4 8.3E-05 32.4 2.5 19 107-125 5-23 (222)
324 3cmu_A Protein RECA, recombina 70.1 4.1 0.00014 42.0 4.7 37 106-145 1080-1116(2050)
325 3m6a_A ATP-dependent protease 69.7 2.2 7.5E-05 37.9 2.4 20 106-125 107-126 (543)
326 3fb4_A Adenylate kinase; psych 69.5 2.3 7.7E-05 32.3 2.2 17 109-125 2-18 (216)
327 2i3b_A HCR-ntpase, human cance 69.4 2.7 9.2E-05 31.9 2.6 19 107-125 1-19 (189)
328 1g41_A Heat shock protein HSLU 69.1 2.6 8.9E-05 36.7 2.7 18 107-124 50-67 (444)
329 1a5t_A Delta prime, HOLB; zinc 69.1 2.6 8.9E-05 34.7 2.6 33 94-126 4-43 (334)
330 3auy_A DNA double-strand break 68.9 2.1 7.3E-05 35.8 2.1 16 109-124 27-42 (371)
331 1qf9_A UMP/CMP kinase, protein 68.9 2.3 7.9E-05 31.2 2.1 16 109-124 8-23 (194)
332 2cbz_A Multidrug resistance-as 68.9 2.6 8.7E-05 33.2 2.4 20 105-124 29-48 (237)
333 1sxj_E Activator 1 40 kDa subu 68.8 2.7 9.3E-05 34.3 2.7 17 109-125 38-54 (354)
334 1sxj_A Activator 1 95 kDa subu 68.8 2.3 7.8E-05 37.4 2.3 18 108-125 78-95 (516)
335 1rj9_A FTSY, signal recognitio 68.6 5.7 0.00019 32.5 4.5 19 107-125 102-120 (304)
336 2bbw_A Adenylate kinase 4, AK4 68.6 2.6 8.7E-05 32.9 2.3 18 107-124 27-44 (246)
337 2ce7_A Cell division protein F 68.5 2.2 7.6E-05 37.4 2.1 17 108-124 50-66 (476)
338 1cke_A CK, MSSA, protein (cyti 68.4 2.4 8.3E-05 32.2 2.2 18 108-125 6-23 (227)
339 2chq_A Replication factor C sm 68.4 2.6 8.9E-05 33.6 2.4 17 109-125 40-56 (319)
340 1sgw_A Putative ABC transporte 68.4 2.9 0.0001 32.4 2.6 20 105-124 33-52 (214)
341 2v9p_A Replication protein E1; 68.3 2.8 9.6E-05 34.5 2.6 21 105-125 124-144 (305)
342 3dl0_A Adenylate kinase; phosp 68.1 2.5 8.6E-05 32.0 2.2 17 109-125 2-18 (216)
343 2vli_A Antibiotic resistance p 68.1 2 6.7E-05 31.5 1.5 19 107-125 5-23 (183)
344 3a4m_A L-seryl-tRNA(SEC) kinas 68.0 2.3 7.7E-05 33.7 1.9 20 107-126 4-23 (260)
345 1tf7_A KAIC; homohexamer, hexa 68.0 6.6 0.00023 34.5 5.1 50 105-158 279-328 (525)
346 1zuh_A Shikimate kinase; alpha 67.9 2.5 8.5E-05 30.7 2.0 19 108-126 8-26 (168)
347 2v3c_C SRP54, signal recogniti 67.8 5.9 0.0002 34.2 4.7 34 109-145 101-134 (432)
348 3b9q_A Chloroplast SRP recepto 67.8 5.9 0.0002 32.4 4.5 19 107-125 100-118 (302)
349 1t5i_A C_terminal domain of A 67.7 21 0.0007 26.0 7.2 44 140-196 33-77 (172)
350 1ukz_A Uridylate kinase; trans 67.5 2.5 8.4E-05 31.7 2.0 17 108-124 16-32 (203)
351 2pt5_A Shikimate kinase, SK; a 67.5 2.8 9.4E-05 30.3 2.2 17 109-125 2-18 (168)
352 1ak2_A Adenylate kinase isoenz 67.5 2.6 9E-05 32.6 2.2 20 106-125 15-34 (233)
353 2pze_A Cystic fibrosis transme 67.3 2.9 9.9E-05 32.6 2.4 20 105-124 32-51 (229)
354 3pxi_A Negative regulator of g 67.2 2.6 8.9E-05 38.8 2.4 25 107-132 201-225 (758)
355 2pcj_A ABC transporter, lipopr 67.1 2.9 9.8E-05 32.5 2.3 20 105-124 28-47 (224)
356 4akg_A Glutathione S-transfera 67.0 2.5 8.6E-05 44.7 2.5 21 104-124 1264-1284(2695)
357 2zpa_A Uncharacterized protein 66.9 6 0.00021 36.2 4.7 60 92-157 175-236 (671)
358 2if2_A Dephospho-COA kinase; a 66.9 2.7 9.1E-05 31.5 2.1 17 109-125 3-19 (204)
359 2jaq_A Deoxyguanosine kinase; 66.7 2.6 9E-05 31.2 2.0 17 109-125 2-18 (205)
360 2ff7_A Alpha-hemolysin translo 66.7 3 0.0001 33.0 2.4 21 105-125 33-53 (247)
361 3gfo_A Cobalt import ATP-bindi 66.6 2.9 0.0001 33.8 2.4 20 105-124 32-51 (275)
362 3tlx_A Adenylate kinase 2; str 66.5 2.9 9.8E-05 32.8 2.3 20 106-125 28-47 (243)
363 1ji0_A ABC transporter; ATP bi 66.3 3.1 0.00011 32.7 2.4 20 105-124 30-49 (240)
364 2ghi_A Transport protein; mult 66.3 3.1 0.00011 33.2 2.4 20 105-124 44-63 (260)
365 1g6h_A High-affinity branched- 66.2 3.1 0.00011 33.1 2.4 20 105-124 31-50 (257)
366 2pbr_A DTMP kinase, thymidylat 66.1 2.8 9.5E-05 30.9 2.0 17 109-125 2-18 (195)
367 4e22_A Cytidylate kinase; P-lo 66.1 3.1 0.00011 32.8 2.4 20 106-125 26-45 (252)
368 1tf7_A KAIC; homohexamer, hexa 65.8 7 0.00024 34.3 4.9 29 105-133 37-65 (525)
369 1jjv_A Dephospho-COA kinase; P 65.7 3 0.0001 31.3 2.2 17 109-125 4-20 (206)
370 2z0h_A DTMP kinase, thymidylat 65.7 2.8 9.7E-05 31.0 2.0 17 110-126 3-19 (197)
371 4g1u_C Hemin import ATP-bindin 65.6 3.2 0.00011 33.2 2.4 20 105-124 35-54 (266)
372 1jr3_A DNA polymerase III subu 65.6 5.7 0.00019 32.5 4.0 17 109-125 40-56 (373)
373 1ypw_A Transitional endoplasmi 65.3 2.6 9E-05 39.3 2.1 19 106-124 237-255 (806)
374 1b0u_A Histidine permease; ABC 65.2 3.3 0.00011 33.0 2.4 20 105-124 30-49 (262)
375 3be4_A Adenylate kinase; malar 65.1 3.1 0.0001 31.8 2.1 19 107-125 5-23 (217)
376 1htw_A HI0065; nucleotide-bind 64.9 3 0.0001 30.7 1.9 20 105-124 31-50 (158)
377 2d2e_A SUFC protein; ABC-ATPas 64.9 3.4 0.00012 32.7 2.4 21 105-125 27-47 (250)
378 1mv5_A LMRA, multidrug resista 64.8 2.8 9.7E-05 33.0 1.9 20 105-124 26-45 (243)
379 2p5t_B PEZT; postsegregational 64.6 2.3 7.8E-05 33.5 1.3 19 107-125 32-50 (253)
380 2zu0_C Probable ATP-dependent 64.5 3.5 0.00012 33.0 2.4 20 105-124 44-63 (267)
381 3qks_A DNA double-strand break 64.4 3.3 0.00011 31.6 2.2 16 109-124 25-40 (203)
382 2yz2_A Putative ABC transporte 64.3 3.5 0.00012 32.9 2.4 20 105-124 31-50 (266)
383 1j8m_F SRP54, signal recogniti 64.1 6.5 0.00022 32.0 4.0 19 109-127 100-118 (297)
384 2qi9_C Vitamin B12 import ATP- 64.0 3.6 0.00012 32.6 2.4 20 105-124 24-43 (249)
385 2nq2_C Hypothetical ABC transp 63.9 3.7 0.00013 32.6 2.4 20 105-124 29-48 (253)
386 2ixe_A Antigen peptide transpo 63.9 3.6 0.00012 33.0 2.4 20 105-124 43-62 (271)
387 1vpl_A ABC transporter, ATP-bi 63.5 3.7 0.00013 32.7 2.4 20 105-124 39-58 (256)
388 1rz3_A Hypothetical protein rb 63.4 3 0.0001 31.5 1.8 19 107-125 22-40 (201)
389 1ls1_A Signal recognition part 63.4 7.9 0.00027 31.4 4.4 20 107-126 98-117 (295)
390 3pxi_A Negative regulator of g 63.3 5.3 0.00018 36.7 3.7 17 109-125 523-539 (758)
391 3i5x_A ATP-dependent RNA helic 63.2 59 0.002 28.1 10.4 62 119-190 320-381 (563)
392 3cf2_A TER ATPase, transitiona 63.1 3.2 0.00011 38.9 2.2 17 108-124 239-255 (806)
393 2ihy_A ABC transporter, ATP-bi 63.1 3.8 0.00013 33.1 2.4 20 105-124 45-64 (279)
394 1e4v_A Adenylate kinase; trans 63.0 3.5 0.00012 31.3 2.1 17 109-125 2-18 (214)
395 2olj_A Amino acid ABC transpor 62.9 3.9 0.00013 32.8 2.4 20 105-124 48-67 (263)
396 2og2_A Putative signal recogni 62.8 7.9 0.00027 32.5 4.4 18 108-125 158-175 (359)
397 2xxa_A Signal recognition part 62.6 8.6 0.00029 33.1 4.7 34 109-145 102-136 (433)
398 3eaq_A Heat resistant RNA depe 62.5 24 0.00082 26.7 6.9 44 140-196 33-77 (212)
399 1uf9_A TT1252 protein; P-loop, 62.3 3.4 0.00012 30.6 1.9 17 109-125 10-26 (203)
400 1vht_A Dephospho-COA kinase; s 62.1 3.1 0.00011 31.6 1.7 18 108-125 5-22 (218)
401 3e70_C DPA, signal recognition 62.0 8.5 0.00029 31.8 4.4 18 107-124 129-146 (328)
402 1ihu_A Arsenical pump-driving 61.7 9.3 0.00032 33.9 4.9 35 108-145 9-43 (589)
403 3zq6_A Putative arsenical pump 61.7 9.3 0.00032 31.2 4.6 34 109-145 16-49 (324)
404 3ice_A Transcription terminati 61.5 20 0.00069 30.9 6.7 34 93-126 157-193 (422)
405 1sxj_B Activator 1 37 kDa subu 61.4 3.9 0.00013 32.7 2.2 17 109-125 44-60 (323)
406 2dhr_A FTSH; AAA+ protein, hex 61.3 3.7 0.00013 36.2 2.2 17 108-124 65-81 (499)
407 2xb4_A Adenylate kinase; ATP-b 61.0 4.1 0.00014 31.3 2.2 17 109-125 2-18 (223)
408 2vp4_A Deoxynucleoside kinase; 61.0 3.7 0.00013 31.7 1.9 19 106-124 19-37 (230)
409 2jeo_A Uridine-cytidine kinase 60.9 3.3 0.00011 32.3 1.6 20 106-125 24-43 (245)
410 3nh6_A ATP-binding cassette SU 60.9 3.4 0.00012 34.0 1.8 20 105-124 78-97 (306)
411 3qkt_A DNA double-strand break 60.8 4 0.00014 33.7 2.2 17 109-125 25-41 (339)
412 3tqf_A HPR(Ser) kinase; transf 60.5 5 0.00017 30.6 2.5 23 106-128 15-37 (181)
413 1r6b_X CLPA protein; AAA+, N-t 60.4 3.7 0.00012 37.7 2.0 17 109-125 490-506 (758)
414 1r6b_X CLPA protein; AAA+, N-t 60.3 4.1 0.00014 37.3 2.4 19 107-125 207-225 (758)
415 1ltq_A Polynucleotide kinase; 60.3 4.2 0.00014 32.5 2.2 17 109-125 4-20 (301)
416 2yhs_A FTSY, cell division pro 60.1 9.1 0.00031 33.8 4.4 19 108-126 294-312 (503)
417 1gtv_A TMK, thymidylate kinase 59.8 2.6 8.8E-05 31.7 0.8 15 110-124 3-17 (214)
418 3sqw_A ATP-dependent RNA helic 59.6 72 0.0025 27.9 10.4 56 125-190 275-330 (579)
419 2woo_A ATPase GET3; tail-ancho 59.6 9.2 0.00031 31.4 4.2 33 109-144 21-53 (329)
420 1qvr_A CLPB protein; coiled co 59.5 4.5 0.00015 37.8 2.5 16 109-124 590-605 (854)
421 3vkg_A Dynein heavy chain, cyt 59.2 4.2 0.00014 43.7 2.5 20 104-123 1301-1320(3245)
422 2jgn_A DBX, DDX3, ATP-dependen 59.2 21 0.00072 26.4 5.9 41 117-161 29-69 (185)
423 1lkx_A Myosin IE heavy chain; 59.2 5.7 0.00019 36.6 3.1 33 92-124 76-111 (697)
424 1nij_A Hypothetical protein YJ 59.2 9.8 0.00034 31.0 4.3 15 110-124 7-21 (318)
425 2bbs_A Cystic fibrosis transme 59.2 4.7 0.00016 32.8 2.3 20 105-124 62-81 (290)
426 2pjz_A Hypothetical protein ST 58.9 4.7 0.00016 32.3 2.2 19 107-125 30-48 (263)
427 3lda_A DNA repair protein RAD5 58.8 7.3 0.00025 33.2 3.5 40 108-147 179-221 (400)
428 3u61_B DNA polymerase accessor 58.5 4.2 0.00014 32.9 1.9 17 109-125 50-66 (324)
429 3aez_A Pantothenate kinase; tr 58.4 4.3 0.00015 33.4 1.9 19 106-124 89-107 (312)
430 1c9k_A COBU, adenosylcobinamid 58.4 8.5 0.00029 29.1 3.5 33 110-149 2-34 (180)
431 3ug7_A Arsenical pump-driving 58.2 11 0.00039 31.1 4.6 33 110-145 29-61 (349)
432 2vhj_A Ntpase P4, P4; non- hyd 58.1 6 0.00021 33.0 2.8 25 106-130 122-146 (331)
433 2i4i_A ATP-dependent RNA helic 57.9 37 0.0012 27.9 7.8 41 137-190 275-315 (417)
434 2qen_A Walker-type ATPase; unk 57.9 6.8 0.00023 31.5 3.1 19 106-124 30-48 (350)
435 2f1r_A Molybdopterin-guanine d 57.7 3.8 0.00013 30.6 1.4 18 109-126 4-21 (171)
436 2ffh_A Protein (FFH); SRP54, s 57.3 9.7 0.00033 32.8 4.1 21 108-128 99-119 (425)
437 1odf_A YGR205W, hypothetical 3 57.1 5.1 0.00017 32.5 2.2 16 109-124 33-48 (290)
438 1svm_A Large T antigen; AAA+ f 57.0 5.5 0.00019 33.7 2.4 20 106-125 168-187 (377)
439 2rcn_A Probable GTPase ENGC; Y 56.9 13 0.00044 31.3 4.7 24 101-124 209-232 (358)
440 1byi_A Dethiobiotin synthase; 56.8 16 0.00055 27.5 4.9 33 111-146 6-38 (224)
441 2v26_A Myosin VI; calmodulin-b 56.4 6.6 0.00022 36.7 3.0 33 92-124 122-157 (784)
442 4eaq_A DTMP kinase, thymidylat 56.4 4.7 0.00016 31.4 1.8 19 106-124 25-43 (229)
443 3ake_A Cytidylate kinase; CMP 56.3 5.6 0.00019 29.6 2.2 17 109-125 4-20 (208)
444 1ko7_A HPR kinase/phosphatase; 56.2 25 0.00087 28.9 6.3 22 107-128 144-165 (314)
445 3tqc_A Pantothenate kinase; bi 56.2 9.3 0.00032 31.6 3.7 16 109-124 94-109 (321)
446 2eyq_A TRCF, transcription-rep 55.8 9.4 0.00032 37.1 4.1 53 104-162 14-66 (1151)
447 4db1_A Myosin-7; S1DC, cardiac 55.7 7 0.00024 36.5 3.1 35 92-126 153-190 (783)
448 1w9i_A Myosin II heavy chain; 55.7 7 0.00024 36.4 3.1 34 92-125 154-190 (770)
449 2onk_A Molybdate/tungstate ABC 55.6 5.7 0.00019 31.3 2.2 17 108-124 25-41 (240)
450 1q3t_A Cytidylate kinase; nucl 55.4 6.6 0.00022 30.3 2.5 20 106-125 15-34 (236)
451 1w7j_A Myosin VA; motor protei 55.0 7.3 0.00025 36.4 3.1 33 92-124 138-173 (795)
452 3cf2_A TER ATPase, transitiona 55.0 4.9 0.00017 37.6 1.9 17 108-124 512-528 (806)
453 1sq5_A Pantothenate kinase; P- 54.7 5.2 0.00018 32.5 1.8 18 107-124 80-97 (308)
454 1pui_A ENGB, probable GTP-bind 54.5 5.3 0.00018 29.7 1.8 19 106-124 25-43 (210)
455 2p6n_A ATP-dependent RNA helic 54.3 31 0.0011 25.7 6.1 44 139-195 55-99 (191)
456 3sr0_A Adenylate kinase; phosp 53.9 5.6 0.00019 30.6 1.8 16 109-124 2-17 (206)
457 2grj_A Dephospho-COA kinase; T 53.9 6 0.00021 30.0 2.0 17 109-125 14-30 (192)
458 1uj2_A Uridine-cytidine kinase 53.8 6.3 0.00021 30.8 2.2 17 109-125 24-40 (252)
459 1w5s_A Origin recognition comp 53.6 7.7 0.00026 32.1 2.8 18 108-125 51-70 (412)
460 1kk8_A Myosin heavy chain, str 53.6 5.4 0.00018 37.5 2.0 34 92-125 151-187 (837)
461 4tmk_A Protein (thymidylate ki 53.6 6.5 0.00022 30.3 2.2 28 106-134 2-29 (213)
462 3fvq_A Fe(3+) IONS import ATP- 53.5 6.5 0.00022 33.1 2.3 20 105-124 28-47 (359)
463 1pzn_A RAD51, DNA repair and r 53.2 7.1 0.00024 32.5 2.5 22 107-128 131-152 (349)
464 1z47_A CYSA, putative ABC-tran 53.1 6.9 0.00024 32.9 2.4 20 105-124 39-58 (355)
465 2yyz_A Sugar ABC transporter, 52.9 7 0.00024 32.9 2.4 20 105-124 27-46 (359)
466 2fna_A Conserved hypothetical 52.5 11 0.00037 30.2 3.5 18 108-125 31-48 (357)
467 2f6r_A COA synthase, bifunctio 52.5 6.5 0.00022 31.5 2.1 17 109-125 77-93 (281)
468 2it1_A 362AA long hypothetical 52.4 7.2 0.00025 32.8 2.4 20 105-124 27-46 (362)
469 4anj_A Unconventional myosin-V 52.3 11 0.00038 36.4 3.9 34 92-125 126-162 (1052)
470 3p32_A Probable GTPase RV1496/ 52.3 15 0.00051 30.4 4.4 19 109-127 81-99 (355)
471 1z5z_A Helicase of the SNF2/RA 52.2 53 0.0018 26.0 7.5 44 115-161 92-135 (271)
472 2h92_A Cytidylate kinase; ross 52.2 8.3 0.00028 29.0 2.6 19 107-125 3-21 (219)
473 1g3q_A MIND ATPase, cell divis 51.9 17 0.00058 27.5 4.4 31 111-144 7-37 (237)
474 1hyq_A MIND, cell division inh 51.8 19 0.00065 27.8 4.8 31 111-144 7-37 (263)
475 3gd7_A Fusion complex of cysti 51.7 7.2 0.00025 33.2 2.3 20 105-124 45-64 (390)
476 4edh_A DTMP kinase, thymidylat 51.7 6.2 0.00021 30.4 1.8 22 105-126 4-25 (213)
477 1e69_A Chromosome segregation 51.5 6 0.0002 32.3 1.7 16 109-124 26-41 (322)
478 1g29_1 MALK, maltose transport 51.4 7.6 0.00026 32.8 2.4 20 105-124 27-46 (372)
479 2ph1_A Nucleotide-binding prot 51.2 18 0.0006 28.3 4.5 31 111-144 23-53 (262)
480 3r20_A Cytidylate kinase; stru 51.1 7.5 0.00025 30.6 2.2 19 107-125 9-27 (233)
481 3q9l_A Septum site-determining 51.1 18 0.0006 27.8 4.4 31 111-144 7-37 (260)
482 3sop_A Neuronal-specific septi 51.1 6.7 0.00023 31.4 2.0 16 109-124 4-19 (270)
483 1qvr_A CLPB protein; coiled co 51.0 6.7 0.00023 36.7 2.2 25 108-133 192-216 (854)
484 3tmk_A Thymidylate kinase; pho 51.0 7.6 0.00026 30.1 2.2 21 106-126 4-24 (216)
485 4dzz_A Plasmid partitioning pr 50.9 15 0.00051 27.1 3.8 24 112-135 7-30 (206)
486 1v43_A Sugar-binding transport 50.7 7.9 0.00027 32.7 2.4 20 105-124 35-54 (372)
487 2ycu_A Non muscle myosin 2C, a 50.7 9.3 0.00032 36.6 3.1 33 92-124 128-163 (995)
488 3zvl_A Bifunctional polynucleo 50.5 7.3 0.00025 33.2 2.2 18 108-125 259-276 (416)
489 2dfs_A Myosin-5A; myosin-V, in 50.5 9.2 0.00032 37.0 3.1 33 92-124 138-173 (1080)
490 3v9p_A DTMP kinase, thymidylat 50.5 6.2 0.00021 30.9 1.6 23 104-126 22-44 (227)
491 3rlf_A Maltose/maltodextrin im 50.4 8.1 0.00028 32.8 2.4 20 105-124 27-46 (381)
492 1g8x_A Myosin II heavy chain f 50.3 9.1 0.00031 36.8 3.0 42 92-133 154-200 (1010)
493 1yrb_A ATP(GTP)binding protein 50.3 15 0.00053 28.2 4.0 19 109-127 16-34 (262)
494 1s2m_A Putative ATP-dependent 50.2 62 0.0021 26.3 7.9 45 139-196 259-304 (400)
495 3umf_A Adenylate kinase; rossm 50.2 7.9 0.00027 30.1 2.2 19 106-124 28-46 (217)
496 2npi_A Protein CLP1; CLP1-PCF1 50.1 8.6 0.00029 33.4 2.6 20 105-124 136-155 (460)
497 3pey_A ATP-dependent RNA helic 50.1 59 0.002 26.1 7.7 47 138-197 243-290 (395)
498 3end_A Light-independent proto 50.0 18 0.00062 28.8 4.4 34 108-144 42-75 (307)
499 2woj_A ATPase GET3; tail-ancho 50.0 15 0.00051 30.5 4.0 33 110-145 21-55 (354)
500 3d31_A Sulfate/molybdate ABC t 49.8 6.5 0.00022 32.9 1.7 20 105-124 24-43 (348)
No 1
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.89 E-value=3e-23 Score=174.25 Aligned_cols=120 Identities=23% Similarity=0.363 Sum_probs=102.2
Q ss_pred cccCCCcchHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcC--CcEEEeccCCCchHHHHHHHHHHHHHhcCC
Q 028887 60 AGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRS 137 (202)
Q Consensus 60 ~~~~~~~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g--~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~ 137 (202)
.+.+.+..++..|.+.++++.+++.+.++||..||++|.++||.++.| +|++++++||||||++|++|+++.+.....
T Consensus 82 ~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~ 161 (300)
T 3fmo_B 82 RDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK 161 (300)
T ss_dssp SSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSC
T ss_pred CCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCC
Confidence 344444456677888899999999999999999999999999999987 999999999999999999999999987777
Q ss_pred ccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCcc
Q 028887 138 AVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGML 186 (202)
Q Consensus 138 ~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (202)
++++|||+|||+||.|++++++.++.... .+.+..+++|...
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~-------~~~~~~~~~~~~~ 203 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYP-------ELKLAYAVRGNKL 203 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTST-------TCCEEEESTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCC-------CcEEEEEeCCccH
Confidence 78999999999999999999999987532 3455555555543
No 2
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.87 E-value=6.3e-22 Score=160.56 Aligned_cols=121 Identities=29% Similarity=0.378 Sum_probs=104.3
Q ss_pred cchHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhc-----CCccE
Q 028887 66 SLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ-----RSAVQ 140 (202)
Q Consensus 66 ~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~-----~~~~~ 140 (202)
..++..|.+.++++.+++.+.+.||..|+++|.++++.++.|+|+++++|||+|||++|++|++..+... ..+++
T Consensus 25 p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~ 104 (242)
T 3fe2_A 25 PKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI 104 (242)
T ss_dssp CCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCS
T ss_pred CCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCE
Confidence 3456667777999999999999999999999999999999999999999999999999999999998743 24668
Q ss_pred EEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHHH
Q 028887 141 AVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 141 ~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 194 (202)
+||++||++|+.|+++.+++++... ++.+..++||.....+.+.++
T Consensus 105 ~lil~Pt~~L~~Q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 105 CLVLAPTRELAQQVQQVAAEYCRAC--------RLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEEECTTSCHHHHHHHHH
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhc--------CceEEEEECCCChHHHHHHhc
Confidence 9999999999999999999998765 467777777777766655544
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.87 E-value=9e-22 Score=172.62 Aligned_cols=120 Identities=32% Similarity=0.504 Sum_probs=105.0
Q ss_pred chHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC-----CccEE
Q 028887 67 LTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-----SAVQA 141 (202)
Q Consensus 67 ~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~-----~~~~~ 141 (202)
.++..|.+.++++.+++++.++||.+||++|.++||.++.|+|++++++||||||++|++|+++.+.... .++++
T Consensus 53 ~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~ 132 (434)
T 2db3_A 53 QPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQV 132 (434)
T ss_dssp CCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSE
T ss_pred CCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccE
Confidence 4566788889999999999999999999999999999999999999999999999999999999987543 36789
Q ss_pred EEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHHH
Q 028887 142 VIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 142 Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 194 (202)
|||+|||+|+.|+++++++++... .+++..++||.....|.+.++
T Consensus 133 lil~PtreLa~Q~~~~~~~~~~~~--------~~~~~~~~gg~~~~~~~~~l~ 177 (434)
T 2db3_A 133 VIVSPTRELAIQIFNEARKFAFES--------YLKIGIVYGGTSFRHQNECIT 177 (434)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTS--------SCCCCEECTTSCHHHHHHHHT
T ss_pred EEEecCHHHHHHHHHHHHHHhccC--------CcEEEEEECCCCHHHHHHHhh
Confidence 999999999999999999998765 466777788877776665543
No 4
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=157.46 Aligned_cols=117 Identities=26% Similarity=0.327 Sum_probs=101.7
Q ss_pred hHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCC
Q 028887 68 TLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Pt 147 (202)
....|.+.++++.+++.+.++||..|+++|.++++.++.|++++++++||+|||++|++|+++.+.....++++||++||
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 45567777999999999999999999999999999999999999999999999999999999998877777789999999
Q ss_pred HHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHH
Q 028887 148 RELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSW 192 (202)
Q Consensus 148 r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (202)
++|+.|+.+++++++... ++.+..++||.....+...
T Consensus 121 r~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~ 157 (249)
T 3ber_A 121 RELAFQISEQFEALGSSI--------GVQSAVIVGGIDSMSQSLA 157 (249)
T ss_dssp HHHHHHHHHHHHHHHGGG--------TCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccC--------CeeEEEEECCCChHHHHHH
Confidence 999999999999998754 3566666666665555443
No 5
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.85 E-value=5.2e-21 Score=150.78 Aligned_cols=113 Identities=30% Similarity=0.489 Sum_probs=96.7
Q ss_pred HHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHh
Q 028887 71 ELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~L 150 (202)
+|++.++++.+++.+.++||..|+++|.++++.+++|+++++.+|||+|||++|++|+++.+.....++++||++|+++|
T Consensus 4 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 83 (206)
T 1vec_A 4 EFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTREL 83 (206)
T ss_dssp SGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHH
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHH
Confidence 36667999999999999999999999999999999999999999999999999999999988766666789999999999
Q ss_pred HHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH
Q 028887 151 GMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK 190 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (202)
+.|+++.+++++.... ++.+..++||.....+.
T Consensus 84 ~~q~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~ 116 (206)
T 1vec_A 84 ALQVSQICIQVSKHMG-------GAKVMATTGGTNLRDDI 116 (206)
T ss_dssp HHHHHHHHHHHTTTSS-------SCCEEEECSSSCHHHHH
T ss_pred HHHHHHHHHHHHhhcC-------CceEEEEeCCccHHHHH
Confidence 9999999999986542 24555556665554443
No 6
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.85 E-value=4.6e-21 Score=154.37 Aligned_cols=113 Identities=22% Similarity=0.353 Sum_probs=95.7
Q ss_pred HHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 70 RELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
..|.+.++++.+++.+.+.||..|+++|.++++.++.|+|++++++||+|||++|++|+++.+.....+.++||++||++
T Consensus 24 ~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 103 (230)
T 2oxc_A 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTRE 103 (230)
T ss_dssp CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHH
Confidence 34566699999999999999999999999999999999999999999999999999999998866555678999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHH
Q 028887 150 LGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (202)
|+.|+++++++++.... ++.+..++||.....+
T Consensus 104 L~~q~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~ 136 (230)
T 2oxc_A 104 IAVQIHSVITAIGIKME-------GLECHVFIGGTPLSQD 136 (230)
T ss_dssp HHHHHHHHHHHHTTTST-------TCCEEEECTTSCHHHH
T ss_pred HHHHHHHHHHHHhcccC-------CceEEEEeCCCCHHHH
Confidence 99999999999986531 2455555555554443
No 7
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.85 E-value=2.1e-21 Score=157.11 Aligned_cols=115 Identities=29% Similarity=0.395 Sum_probs=94.2
Q ss_pred HHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCH
Q 028887 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 69 ~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr 148 (202)
...|++.++++.+++.+.++||..|+++|.++++.++.|+|++++++||+|||++|++|+++.+.....+.++||++||+
T Consensus 29 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 34567779999999999999999999999999999999999999999999999999999999887655567899999999
Q ss_pred HhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHH
Q 028887 149 ELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKS 191 (202)
Q Consensus 149 ~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (202)
+|+.|+.+++++++... ++.+..+++|.....+.+
T Consensus 109 ~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~ 143 (237)
T 3bor_A 109 ELAQQIQKVILALGDYM--------GATCHACIGGTNVRNEMQ 143 (237)
T ss_dssp HHHHHHHHHHHHHTTTT--------TCCEEEECC---------
T ss_pred HHHHHHHHHHHHHhhhc--------CceEEEEECCCchHHHHH
Confidence 99999999999998754 355666666665555433
No 8
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.85 E-value=5.1e-21 Score=153.50 Aligned_cols=114 Identities=27% Similarity=0.389 Sum_probs=91.3
Q ss_pred HHHh-CCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhc------CCccEEEE
Q 028887 71 ELCQ-GHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ------RSAVQAVI 143 (202)
Q Consensus 71 ~l~~-~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~------~~~~~~Li 143 (202)
.|.+ .++++.+++++.+.||..|+++|.++++.+++|+|+++++|||+|||++|++|++..+... ..++++||
T Consensus 20 ~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~li 99 (228)
T 3iuy_A 20 RFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLV 99 (228)
T ss_dssp SHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEE
T ss_pred hHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEE
Confidence 3444 4899999999999999999999999999999999999999999999999999999887532 24568999
Q ss_pred ecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHH
Q 028887 144 VVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 144 l~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 193 (202)
++||++|+.|+.++++++... ++.+..++||.....+.+.+
T Consensus 100 l~Pt~~L~~q~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 140 (228)
T 3iuy_A 100 LTPTRELALHVEAECSKYSYK---------GLKSICIYGGRNRNGQIEDI 140 (228)
T ss_dssp ECSSHHHHHHHHHHHHHHCCT---------TCCEEEECC------CHHHH
T ss_pred EeCCHHHHHHHHHHHHHhccc---------CceEEEEECCCChHHHHHHh
Confidence 999999999999999998743 36677777777666554443
No 9
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=151.32 Aligned_cols=117 Identities=24% Similarity=0.400 Sum_probs=97.8
Q ss_pred chHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhc----CCccEEE
Q 028887 67 LTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ----RSAVQAV 142 (202)
Q Consensus 67 ~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~----~~~~~~L 142 (202)
.+...|.+.++++.+++.+.+.||..|+++|.++++.+++|++++++++||+|||++|++|+++.+... ..+.++|
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~l 101 (236)
T 2pl3_A 22 NEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVL 101 (236)
T ss_dssp GGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEE
T ss_pred cccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEE
Confidence 345567778999999999999999999999999999999999999999999999999999999988642 2345899
Q ss_pred EecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHH
Q 028887 143 IVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKS 191 (202)
Q Consensus 143 il~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (202)
|++||++|+.|+.+++++++... ++.+..++||.....+.+
T Consensus 102 il~Pt~~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~ 142 (236)
T 2pl3_A 102 IISPTRELAYQTFEVLRKVGKNH--------DFSAGLIIGGKDLKHEAE 142 (236)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTS--------SCCEEEECCC--CHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHhCCC--------CeeEEEEECCCCHHHHHH
Confidence 99999999999999999998764 356666666665555443
No 10
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=1.8e-20 Score=149.33 Aligned_cols=116 Identities=21% Similarity=0.361 Sum_probs=98.0
Q ss_pred HHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHh
Q 028887 71 ELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~L 150 (202)
.|.+.++++.+++.+.+.||..|+++|.++++.+++|++++++++||+|||++|++|+++.+.......++||++|+++|
T Consensus 15 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 15 GFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 94 (220)
T ss_dssp CSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHH
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHH
Confidence 46667999999999999999999999999999999999999999999999999999999988665556689999999999
Q ss_pred HHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHH
Q 028887 151 GMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 193 (202)
+.|+.++++++..... ++.+..++||.....+.+.+
T Consensus 95 ~~q~~~~~~~~~~~~~-------~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 95 AFQISKEYERFSKYMP-------NVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp HHHHHHHHHHHTTTST-------TCCEEEESCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-------CceEEEEeCCCChHHHHHHH
Confidence 9999999999986532 24555555655555554444
No 11
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.84 E-value=5.9e-21 Score=152.45 Aligned_cols=113 Identities=28% Similarity=0.402 Sum_probs=94.0
Q ss_pred HHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCH
Q 028887 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 69 ~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr 148 (202)
...|.+.++++.+++.+.++||..|+++|.++++.+++|+++++.+|||+|||++|++|+++.+.....+.++||++|++
T Consensus 13 ~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp CCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred cCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 34566669999999999999999999999999999999999999999999999999999999887666677999999999
Q ss_pred HhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHH
Q 028887 149 ELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 149 ~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (202)
+|+.|+++.+++++... ++.+..++||.....+
T Consensus 93 ~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~ 125 (224)
T 1qde_A 93 ELALQIQKVVMALAFHM--------DIKVHACIGGTSFVED 125 (224)
T ss_dssp HHHHHHHHHHHHHTTTS--------CCCEEEECC-------
T ss_pred HHHHHHHHHHHHHhccc--------CceEEEEeCCcchHHH
Confidence 99999999999998764 3555556665554443
No 12
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.84 E-value=4.8e-21 Score=156.07 Aligned_cols=118 Identities=24% Similarity=0.365 Sum_probs=100.2
Q ss_pred hHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC---------Cc
Q 028887 68 TLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---------SA 138 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~---------~~ 138 (202)
++..|.+.++++.+++++.++||..|+++|.++++.++.|+|++++++||+|||++|++|+++.+.... .+
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~ 100 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAY 100 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCC
Confidence 344566669999999999999999999999999999999999999999999999999999999886432 24
Q ss_pred cEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHH
Q 028887 139 VQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 139 ~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 193 (202)
+++||++||++|+.|+++++++++... .+.+..++||.....+.+.+
T Consensus 101 ~~~lil~Pt~~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~ 147 (253)
T 1wrb_A 101 PKCLILAPTRELAIQILSESQKFSLNT--------PLRSCVVYGGADTHSQIREV 147 (253)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTS--------SCCEEEECSSSCSHHHHHHH
T ss_pred ceEEEEECCHHHHHHHHHHHHHHhccC--------CceEEEEECCCCHHHHHHHh
Confidence 689999999999999999999998764 46667777777766655443
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.84 E-value=1.4e-20 Score=150.16 Aligned_cols=113 Identities=26% Similarity=0.394 Sum_probs=95.1
Q ss_pred HHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHh
Q 028887 71 ELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~L 150 (202)
.|.+.++++.+++.+.++||..|+++|.++++.++.|++++++++||+|||++|++|+++.+.....+.++||++||++|
T Consensus 5 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L 84 (219)
T 1q0u_A 5 QFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTREL 84 (219)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHH
T ss_pred CHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHH
Confidence 46667999999999999999999999999999999999999999999999999999999988765566789999999999
Q ss_pred HHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccH
Q 028887 151 GMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLR 187 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (202)
+.|+++++++++....+ ...+.+..++||....
T Consensus 85 ~~q~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~ 117 (219)
T 1q0u_A 85 ATQIYHETLKITKFCPK----DRMIVARCLIGGTDKQ 117 (219)
T ss_dssp HHHHHHHHHHHHTTSCG----GGCCCEEEECCCSHHH
T ss_pred HHHHHHHHHHHhhhccc----ccceEEEEEeCCCCHH
Confidence 99999999999875421 0124455555555433
No 14
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=160.45 Aligned_cols=118 Identities=28% Similarity=0.429 Sum_probs=99.8
Q ss_pred hHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC-----------
Q 028887 68 TLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR----------- 136 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~----------- 136 (202)
++..|.+.++++.+++++..+||..|+++|.++|+.++.|+|+++++|||+|||++|++|+++.+....
T Consensus 13 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~ 92 (417)
T 2i4i_A 13 HIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKEN 92 (417)
T ss_dssp CCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHC
T ss_pred ccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 344566679999999999999999999999999999999999999999999999999999998876432
Q ss_pred -------CccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHH
Q 028887 137 -------SAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 137 -------~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 193 (202)
.++++||++||++|+.|+++++++++... ++.+..++||.....+.+.+
T Consensus 93 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~ 148 (417)
T 2i4i_A 93 GRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS--------RVRPCVVYGGADIGQQIRDL 148 (417)
T ss_dssp BTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS--------SCCEEEECSSSCHHHHHHHH
T ss_pred cccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC--------CceEEEEECCCCHHHHHHHh
Confidence 13679999999999999999999998764 46667777776666554443
No 15
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.83 E-value=3.2e-20 Score=152.64 Aligned_cols=109 Identities=32% Similarity=0.462 Sum_probs=94.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC----CccEEEEecCCHHhHH
Q 028887 77 VPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR----SAVQAVIVVPTRELGM 152 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~----~~~~~Lil~Ptr~La~ 152 (202)
+++.+++.+.++||..|+++|.++++.++.|+|++++++||+|||++|++|+++.+...+ .+.++||++||++|+.
T Consensus 61 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~ 140 (262)
T 3ly5_A 61 VNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAM 140 (262)
T ss_dssp CCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHH
T ss_pred cCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999887532 3458999999999999
Q ss_pred HHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHH
Q 028887 153 QVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 153 Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 193 (202)
|+++.+++++... +..+..++||.....+...+
T Consensus 141 q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~ 173 (262)
T 3ly5_A 141 QTFGVLKELMTHH--------VHTYGLIMGGSNRSAEAQKL 173 (262)
T ss_dssp HHHHHHHHHTTTC--------CSCEEEECSSSCHHHHHHHH
T ss_pred HHHHHHHHHHhhc--------CceEEEEECCCCHHHHHHHh
Confidence 9999999998765 35566666666666554443
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.83 E-value=6.4e-20 Score=144.42 Aligned_cols=112 Identities=30% Similarity=0.434 Sum_probs=95.4
Q ss_pred HHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhc---CCccEEEEecCCH
Q 028887 72 LCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ---RSAVQAVIVVPTR 148 (202)
Q Consensus 72 l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~---~~~~~~Lil~Ptr 148 (202)
|.+.++++.+++.+.+.||..|+++|.++++.+++|+++++.+|||+|||++|++|+++.+... ..++++||++|++
T Consensus 3 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~ 82 (207)
T 2gxq_A 3 FKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTR 82 (207)
T ss_dssp GGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSH
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCH
Confidence 5667999999999999999999999999999999999999999999999999999999987532 2456899999999
Q ss_pred HhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHH
Q 028887 149 ELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 149 ~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 193 (202)
+|+.|+.+.+++++.. +.+..++||.....+.+.+
T Consensus 83 ~L~~q~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~ 117 (207)
T 2gxq_A 83 ELALQVASELTAVAPH----------LKVVAVYGGTGYGKQKEAL 117 (207)
T ss_dssp HHHHHHHHHHHHHCTT----------SCEEEECSSSCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc----------ceEEEEECCCChHHHHHHh
Confidence 9999999999999764 3456666666655554443
No 17
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=151.78 Aligned_cols=103 Identities=28% Similarity=0.493 Sum_probs=89.9
Q ss_pred CCCcchHHHHH-hCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhc-CCccE
Q 028887 63 GNNSLTLRELC-QGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ-RSAVQ 140 (202)
Q Consensus 63 ~~~~~~~~~l~-~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~-~~~~~ 140 (202)
+.+..+|.++. +.++++.+++.+.++||..|+++|.++++.++.|+++++.+|||+|||++|++|+++.+... ..+++
T Consensus 21 p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~ 100 (245)
T 3dkp_A 21 PDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFR 100 (245)
T ss_dssp CCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCC
T ss_pred CCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCce
Confidence 34445566653 35899999999999999999999999999999999999999999999999999999988642 34568
Q ss_pred EEEecCCHHhHHHHHHHHHHhhcCC
Q 028887 141 AVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 141 ~Lil~Ptr~La~Q~~~~~~~l~~~~ 165 (202)
+||++||++|+.|+++++++++...
T Consensus 101 ~lil~Pt~~L~~q~~~~~~~~~~~~ 125 (245)
T 3dkp_A 101 ALIISPTRELASQIHRELIKISEGT 125 (245)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999997654
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.82 E-value=8.1e-20 Score=157.60 Aligned_cols=117 Identities=27% Similarity=0.377 Sum_probs=101.0
Q ss_pred HHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 70 RELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
..|.+.++++.+++.+.+.||..|+++|.++++.++.|++++++++||+|||++|++|+++.+.....+.++||++||++
T Consensus 37 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~ 116 (410)
T 2j0s_A 37 PTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRE 116 (410)
T ss_dssp CSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHH
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHH
Confidence 35666699999999999999999999999999999999999999999999999999999998765555668999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHHH
Q 028887 150 LGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 194 (202)
|+.|+.+++++++... ++.+..++||.....+.+.++
T Consensus 117 L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~~~ 153 (410)
T 2j0s_A 117 LAVQIQKGLLALGDYM--------NVQCHACIGGTNVGEDIRKLD 153 (410)
T ss_dssp HHHHHHHHHHHHTTTT--------TCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--------CeEEEEEECCCCHHHHHHHhh
Confidence 9999999999998765 466667777776666555443
No 19
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.80 E-value=2e-19 Score=154.55 Aligned_cols=111 Identities=24% Similarity=0.402 Sum_probs=96.9
Q ss_pred HHHHHcccCCCcchHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcC--CcEEEeccCCCchHHHHHHHHHHHH
Q 028887 55 TEELAAGTGNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 55 ~~~l~~~~~~~~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g--~~~l~~a~TGsGKT~~~l~~~l~~l 132 (202)
.+........+..++..|.+.++++.+++.+.+.||..|+++|.++++.++.+ +++++++|||+|||++|++|+++.+
T Consensus 10 ~~~~~~~~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 10 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp HHHHTTCTTSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred ceeecccCCCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHh
Confidence 33343444445566777888899999999999999999999999999999987 9999999999999999999999998
Q ss_pred HhcCCccEEEEecCCHHhHHHHHHHHHHhhcCC
Q 028887 133 NAQRSAVQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 133 ~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~ 165 (202)
..+..++++||++|+++|+.|+.++++++....
T Consensus 90 ~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 122 (412)
T 3fht_A 90 EPANKYPQCLCLSPTYELALQTGKVIEQMGKFY 122 (412)
T ss_dssp CTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTS
T ss_pred hhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 777777789999999999999999999998653
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.80 E-value=6.8e-20 Score=161.91 Aligned_cols=103 Identities=24% Similarity=0.416 Sum_probs=92.6
Q ss_pred CCCcchHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcC--CcEEEeccCCCchHHHHHHHHHHHHHhcCCccE
Q 028887 63 GNNSLTLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQ 140 (202)
Q Consensus 63 ~~~~~~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g--~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~ 140 (202)
+.+..++..|.+.++++.+++.+.++||..|+++|.++++.++.| ++++++|+||||||++|++|+++.+..+..+++
T Consensus 85 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~ 164 (479)
T 3fmp_B 85 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQ 164 (479)
T ss_dssp TSCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCC
T ss_pred CCCccCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCc
Confidence 334345667777899999999999999999999999999999987 999999999999999999999998877777779
Q ss_pred EEEecCCHHhHHHHHHHHHHhhcCC
Q 028887 141 AVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 141 ~Lil~Ptr~La~Q~~~~~~~l~~~~ 165 (202)
+|||+||++|+.|++++++++....
T Consensus 165 ~lil~Pt~~La~Q~~~~~~~~~~~~ 189 (479)
T 3fmp_B 165 CLCLSPTYELALQTGKVIEQMGKFY 189 (479)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTS
T ss_pred EEEEeChHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999988753
No 21
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.80 E-value=5e-19 Score=151.24 Aligned_cols=118 Identities=21% Similarity=0.363 Sum_probs=98.6
Q ss_pred HHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 70 RELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
..|++.++++.+++.+.++||..|+++|.++++.++.|+++++.+|||+|||++|++|++..+.....+.++||++|+++
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 34566699999999999999999999999999999999999999999999999999999998765555668999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHHH
Q 028887 150 LGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 194 (202)
|+.|+.++++++..... ++.+..++||.....+.+.++
T Consensus 88 L~~q~~~~~~~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~ 125 (391)
T 1xti_A 88 LAFQISKEYERFSKYMP-------NVKVAVFFGGLSIKKDEEVLK 125 (391)
T ss_dssp HHHHHHHHHHHHTTTCT-------TCCEEEECTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCC-------CeEEEEEeCCCCHHHHHHHHh
Confidence 99999999999987542 355565666666555544443
No 22
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=1.7e-18 Score=156.80 Aligned_cols=128 Identities=23% Similarity=0.393 Sum_probs=105.2
Q ss_pred CCCcchHHHHHhCC-CCHHHHHHHHHCCCCCCcHHHHHHHHhHH--cCCcEEEeccCCCchHHHHHHHHHHHHHhcC---
Q 028887 63 GNNSLTLRELCQGH-VPEHVLRRMEETGYVLPTDIQREALPVLF--SSRDCILHAQTGSGKTLTYLLLIFSLVNAQR--- 136 (202)
Q Consensus 63 ~~~~~~~~~l~~~g-l~~~l~~~l~~~g~~~~t~~Q~~~i~~i~--~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~--- 136 (202)
+....++.+|.+.+ +++.+++++.++||..|+++|.++|+.++ .|+|+++++|||+|||++|++|+++.+..++
T Consensus 13 ~~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~ 92 (579)
T 3sqw_A 13 NSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDS 92 (579)
T ss_dssp SCCCCCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccc
Confidence 44566888888776 99999999999999999999999999999 7899999999999999999999999987653
Q ss_pred -CccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHHH
Q 028887 137 -SAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLK 194 (202)
Q Consensus 137 -~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~ 194 (202)
..+++|||+||++|+.|+.+++++++.... ....+.+..+++|.....+.+.+.
T Consensus 93 ~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~----~~~~~~~~~~~gg~~~~~~~~~l~ 147 (579)
T 3sqw_A 93 QYMVKAVIVAPTRDLALQIEAEVKKIHDMNY----GLKKYACVSLVGGTDFRAAMNKMN 147 (579)
T ss_dssp TTSCCEEEECSSHHHHHHHHHHHHHHHHHCG----GGTTSCEEEECTTSCHHHHHHHHH
T ss_pred cCCCeEEEEcchHHHHHHHHHHHHHHHhhcc----cccceEEEEEECCccHHHHHHHHh
Confidence 346899999999999999999999864310 001356677788877766655543
No 23
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.78 E-value=7.4e-19 Score=150.94 Aligned_cols=112 Identities=31% Similarity=0.481 Sum_probs=96.3
Q ss_pred HHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 70 RELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
..|++.++++.+++.+.++||..|+++|.++++.++.|+++++.+|||+|||++|++|++..+.....+.++||++|+++
T Consensus 21 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~ 100 (400)
T 1s2m_A 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRE 100 (400)
T ss_dssp CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHH
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHH
Confidence 34666699999999999999999999999999999999999999999999999999999998866555668999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHH
Q 028887 150 LGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (202)
|+.|+.+++++++... ++.+..++++.....+
T Consensus 101 L~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~ 132 (400)
T 1s2m_A 101 LALQTSQVVRTLGKHC--------GISCMVTTGGTNLRDD 132 (400)
T ss_dssp HHHHHHHHHHHHTTTT--------TCCEEEECSSSCHHHH
T ss_pred HHHHHHHHHHHHhccc--------CceEEEEeCCcchHHH
Confidence 9999999999998764 3555555555554443
No 24
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.78 E-value=8.2e-19 Score=149.85 Aligned_cols=114 Identities=28% Similarity=0.386 Sum_probs=98.2
Q ss_pred HHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHh
Q 028887 71 ELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~L 150 (202)
.|++.++++.+++.+.+.||..|+++|.++++.++.|+++++.+|||+|||++|++|+++.+.....+.++||++|+++|
T Consensus 22 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L 101 (394)
T 1fuu_A 22 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTREL 101 (394)
T ss_dssp SSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHH
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHH
Confidence 35556999999999999999999999999999999999999999999999999999999988766566789999999999
Q ss_pred HHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHH
Q 028887 151 GMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSW 192 (202)
Q Consensus 151 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (202)
+.|+.+++++++... ++.+..++||.....+.+.
T Consensus 102 ~~q~~~~~~~~~~~~--------~~~~~~~~g~~~~~~~~~~ 135 (394)
T 1fuu_A 102 ALQIQKVVMALAFHM--------DIKVHACIGGTSFVEDAEG 135 (394)
T ss_dssp HHHHHHHHHHHTTTS--------CCCEEEECSSCCHHHHHHH
T ss_pred HHHHHHHHHHHhccC--------CeeEEEEeCCCchHHHHhh
Confidence 999999999998764 3566666666665554443
No 25
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=150.31 Aligned_cols=117 Identities=28% Similarity=0.386 Sum_probs=100.3
Q ss_pred hHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCC
Q 028887 68 TLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Pt 147 (202)
....|.+.++++.+++.+.+.||..|+++|.++++.++.|+++++.++||+|||++|++|+++.+.....+.++||++|+
T Consensus 38 ~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 38 IVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp CCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred hhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 34556677999999999999999999999999999999999999999999999999999999988765566689999999
Q ss_pred HHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHH
Q 028887 148 RELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSW 192 (202)
Q Consensus 148 r~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (202)
++|+.|+.+++++++... +..+..+++|.....+.+.
T Consensus 118 ~~L~~q~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ 154 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYM--------GASCHACIGGTNVRAEVQK 154 (414)
T ss_dssp HHHHHHHHHHHHHHGGGS--------CCCEEECCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccc--------CceEEEEECCcchHHHHHH
Confidence 999999999999998764 3566666666665555433
No 26
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.77 E-value=3.8e-18 Score=153.40 Aligned_cols=126 Identities=24% Similarity=0.396 Sum_probs=103.2
Q ss_pred CCcchHHHHHhCC-CCHHHHHHHHHCCCCCCcHHHHHHHHhHH--cCCcEEEeccCCCchHHHHHHHHHHHHHhcC----
Q 028887 64 NNSLTLRELCQGH-VPEHVLRRMEETGYVLPTDIQREALPVLF--SSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---- 136 (202)
Q Consensus 64 ~~~~~~~~l~~~g-l~~~l~~~l~~~g~~~~t~~Q~~~i~~i~--~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~---- 136 (202)
....++.+|.+.+ +++.+++.+.+.||..|+++|.++|+.++ .|+|+++++|||+|||++|++|+++.+..++
T Consensus 65 ~~~~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~ 144 (563)
T 3i5x_A 65 SKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQ 144 (563)
T ss_dssp CCCCCHHHHHHTTSSCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSST
T ss_pred CCCcCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccccc
Confidence 3456788887776 99999999999999999999999999999 6789999999999999999999999987654
Q ss_pred CccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHH
Q 028887 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWL 193 (202)
Q Consensus 137 ~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l 193 (202)
..+++|||+||++|+.|++++++++..... ......+..++||.....+.+.+
T Consensus 145 ~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~ 197 (563)
T 3i5x_A 145 YMVKAVIVAPTRDLALQIEAEVKKIHDMNY----GLKKYACVSLVGGTDFRAAMNKM 197 (563)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHHHHHHHCG----GGTTSCEEEECTTSCHHHHHHHH
T ss_pred CCeeEEEEcCcHHHHHHHHHHHHHHHhhcc----ccCceeEEEEECCcCHHHHHHHH
Confidence 245899999999999999999999865321 01134567778887766665444
No 27
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.76 E-value=2.1e-18 Score=146.99 Aligned_cols=96 Identities=27% Similarity=0.469 Sum_probs=88.0
Q ss_pred HHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcC--CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCC
Q 028887 70 RELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 70 ~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g--~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Pt 147 (202)
.+|.+.|+++.+++.+.+.||..|+++|.++++.++.+ +++++++|||+|||++|++|++..+.....+.++||++|+
T Consensus 5 ~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 5 KSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp CSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred cCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 45667799999999999999999999999999999998 9999999999999999999999988766566789999999
Q ss_pred HHhHHHHHHHHHHhhcCC
Q 028887 148 RELGMQVTKVARVLAAKP 165 (202)
Q Consensus 148 r~La~Q~~~~~~~l~~~~ 165 (202)
++|+.|+.+++++++...
T Consensus 85 ~~L~~q~~~~~~~~~~~~ 102 (395)
T 3pey_A 85 RELARQTLEVVQEMGKFT 102 (395)
T ss_dssp HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999988654
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.75 E-value=9.6e-18 Score=141.55 Aligned_cols=113 Identities=26% Similarity=0.489 Sum_probs=95.7
Q ss_pred HHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcC-CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 71 ELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSS-RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g-~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
.|.+.++++.+++.+.+.||..|+++|.++++.++.| +++++.+|||+|||++|++|++..+... .+.++||++|+++
T Consensus 7 ~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~ 85 (367)
T 1hv8_A 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN-NGIEAIILTPTRE 85 (367)
T ss_dssp CGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHH
T ss_pred chhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHH
Confidence 4666799999999999999999999999999999988 7999999999999999999998877542 3458999999999
Q ss_pred hHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHH
Q 028887 150 LGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSW 192 (202)
Q Consensus 150 La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 192 (202)
|+.|+.++++++++.. .+.+..+++|.....+...
T Consensus 86 L~~q~~~~~~~~~~~~--------~~~v~~~~~~~~~~~~~~~ 120 (367)
T 1hv8_A 86 LAIQVADEIESLKGNK--------NLKIAKIYGGKAIYPQIKA 120 (367)
T ss_dssp HHHHHHHHHHHHHCSS--------CCCEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC--------CceEEEEECCcchHHHHhh
Confidence 9999999999998764 3566666666665554443
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=6.3e-17 Score=135.18 Aligned_cols=100 Identities=27% Similarity=0.447 Sum_probs=85.2
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHH
Q 028887 77 VPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~ 156 (202)
+++.+.+.+.++||..|+++|.++++.+++|+++++.+|||+|||++|++|+++. +. ++||++|+++|+.|+.+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~---~~---~~liv~P~~~L~~q~~~ 74 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL---GM---KSLVVTPTRELTRQVAS 74 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH---TC---CEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh---cC---CEEEEeCCHHHHHHHHH
Confidence 5688999999999999999999999999999999999999999999999998763 33 79999999999999999
Q ss_pred HHHHhhcCCCCcccccccceEEEEEeCCccHHHH
Q 028887 157 VARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK 190 (202)
Q Consensus 157 ~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (202)
++++++... ++.+..+++|.....+.
T Consensus 75 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 100 (337)
T 2z0m_A 75 HIRDIGRYM--------DTKVAEVYGGMPYKAQI 100 (337)
T ss_dssp HHHHHTTTS--------CCCEEEECTTSCHHHHH
T ss_pred HHHHHhhhc--------CCcEEEEECCcchHHHH
Confidence 999998764 34555555555554443
No 30
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.66 E-value=2.8e-16 Score=136.08 Aligned_cols=91 Identities=20% Similarity=0.151 Sum_probs=76.3
Q ss_pred HHHHH-CCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 83 RRMEE-TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 83 ~~l~~-~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
+.+.+ .|| .|+++|.++++.++.|+|+++++|||+|||++|+++++..+..+ .++|||+||++|+.|+.++++++
T Consensus 12 ~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~---~~~lil~Pt~~L~~q~~~~~~~~ 87 (414)
T 3oiy_A 12 SFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERLQKL 87 (414)
T ss_dssp HHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhcCC---CEEEEEECCHHHHHHHHHHHHHH
Confidence 34433 477 79999999999999999999999999999999999998877444 48999999999999999999998
Q ss_pred hcCCCCcccccccceEEEEEeCCcc
Q 028887 162 AAKPLDTDLEHKLCTVMALLDGGML 186 (202)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~g~~~ 186 (202)
+. . ++.+..++||...
T Consensus 88 ~~-~--------~~~v~~~~g~~~~ 103 (414)
T 3oiy_A 88 AD-E--------KVKIFGFYSSMKK 103 (414)
T ss_dssp CC-S--------SCCEEECCTTSCH
T ss_pred cc-C--------CceEEEEECCCCh
Confidence 76 3 4566666666655
No 31
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.62 E-value=1.9e-16 Score=141.50 Aligned_cols=98 Identities=27% Similarity=0.356 Sum_probs=70.9
Q ss_pred hHHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcC--CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 68 TLRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFSS--RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 68 ~~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g--~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
++.++...++.+.+++.+.+.||..|+++|.++++.++.| +++++.++||+|||++|++++++.+..+..+.++||++
T Consensus 117 ~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~ 196 (508)
T 3fho_A 117 XXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLA 196 (508)
T ss_dssp ----------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEEC
T ss_pred ccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEE
Confidence 4555667789999999999999999999999999999998 99999999999999999999999987776677999999
Q ss_pred CCHHhHHHHHHHHHHhhcCC
Q 028887 146 PTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 146 Ptr~La~Q~~~~~~~l~~~~ 165 (202)
|+++|+.|+.+++++++...
T Consensus 197 P~~~L~~Q~~~~~~~~~~~~ 216 (508)
T 3fho_A 197 PSRELARQIMDVVTEMGKYT 216 (508)
T ss_dssp SCHHHHHHHHHHHHHHSTTS
T ss_pred CcHHHHHHHHHHHHHhCCcc
Confidence 99999999999999997653
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.60 E-value=3.7e-15 Score=136.89 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=80.8
Q ss_pred HHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCC--ccEEEEecCCHHhHHHHHHHHHH
Q 028887 83 RRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 83 ~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~Lil~Ptr~La~Q~~~~~~~ 160 (202)
..+..+||..|+++|.++++.++.|++++++++||+|||++|++|+++.+..... +.++||++||++|+.|+.+++++
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999998876532 25899999999999999999999
Q ss_pred hhcCCCCcccccccceEEEEEeCCccHHHHH
Q 028887 161 LAAKPLDTDLEHKLCTVMALLDGGMLRRHKS 191 (202)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 191 (202)
++... ++.+..++||.....+.+
T Consensus 84 ~~~~~--------~~~v~~~~g~~~~~~~~~ 106 (696)
T 2ykg_A 84 YFERH--------GYRVTGISGATAENVPVE 106 (696)
T ss_dssp HTTTT--------TCCEEEECSSSCSSSCHH
T ss_pred HhccC--------CceEEEEeCCccccccHH
Confidence 98654 456666666655544433
No 33
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.58 E-value=5.6e-15 Score=136.88 Aligned_cols=89 Identities=21% Similarity=0.237 Sum_probs=81.0
Q ss_pred HHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-HHcCCcEEEeccCCCchHHHHHHHHHHHHH-hcCCccEEEEecCCHH
Q 028887 72 LCQGHVPEHVLRRMEETGYVLPTDIQREALPV-LFSSRDCILHAQTGSGKTLTYLLLIFSLVN-AQRSAVQAVIVVPTRE 149 (202)
Q Consensus 72 l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~-i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~-~~~~~~~~Lil~Ptr~ 149 (202)
|.+.++++.+.+.+.+.||..|+++|.++++. +..|+++++++|||||||++|.+++++.+. .+. +++|++|+++
T Consensus 3 f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~---~~l~i~P~ra 79 (720)
T 2zj8_A 3 VDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGG---KAVYIVPLKA 79 (720)
T ss_dssp GGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCS---EEEEECSSGG
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCC---EEEEEcCcHH
Confidence 56679999999999999999999999999998 889999999999999999999999998876 343 8999999999
Q ss_pred hHHHHHHHHHHhhc
Q 028887 150 LGMQVTKVARVLAA 163 (202)
Q Consensus 150 La~Q~~~~~~~l~~ 163 (202)
|+.|++++++.+..
T Consensus 80 La~q~~~~~~~l~~ 93 (720)
T 2zj8_A 80 LAEEKFQEFQDWEK 93 (720)
T ss_dssp GHHHHHHHTGGGGG
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999976654
No 34
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.58 E-value=9.2e-15 Score=133.04 Aligned_cols=82 Identities=20% Similarity=0.210 Sum_probs=75.0
Q ss_pred hCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHH
Q 028887 74 QGHVPEHVLRRMEE-TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152 (202)
Q Consensus 74 ~~gl~~~l~~~l~~-~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~ 152 (202)
+.++++.+.+.|.+ +||..|+++|.++|+.++.|+|+++.+|||+|||++|++|++. .. .++||++|+++|+.
T Consensus 25 ~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~---~~---g~~lVisP~~~L~~ 98 (591)
T 2v1x_A 25 DFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALC---SD---GFTLVICPLISLME 98 (591)
T ss_dssp CSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHT---SS---SEEEEECSCHHHHH
T ss_pred cCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHH---cC---CcEEEEeCHHHHHH
Confidence 35788999999988 6999999999999999999999999999999999999999965 22 38999999999999
Q ss_pred HHHHHHHHh
Q 028887 153 QVTKVARVL 161 (202)
Q Consensus 153 Q~~~~~~~l 161 (202)
|+.+.++++
T Consensus 99 q~~~~l~~~ 107 (591)
T 2v1x_A 99 DQLMVLKQL 107 (591)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999999987
No 35
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.58 E-value=3.4e-15 Score=133.95 Aligned_cols=86 Identities=23% Similarity=0.298 Sum_probs=77.5
Q ss_pred HHHhCCCCHHHHHHHHH-CCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 71 ELCQGHVPEHVLRRMEE-TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 71 ~l~~~gl~~~l~~~l~~-~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
+|++.++++.+.+.+.+ +||..|+++|.++|+.+++|+|+++.+|||+|||++|++|++.. .+ .+||++|+++
T Consensus 3 ~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~---~g---~~lvi~P~~a 76 (523)
T 1oyw_A 3 QAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL---NG---LTVVVSPLIS 76 (523)
T ss_dssp CCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS---SS---EEEEECSCHH
T ss_pred ChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh---CC---CEEEECChHH
Confidence 46677899999999988 89999999999999999999999999999999999999998742 23 7999999999
Q ss_pred hHHHHHHHHHHhh
Q 028887 150 LGMQVTKVARVLA 162 (202)
Q Consensus 150 La~Q~~~~~~~l~ 162 (202)
|+.|+.+.++.++
T Consensus 77 L~~q~~~~l~~~g 89 (523)
T 1oyw_A 77 LMKDQVDQLQANG 89 (523)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcC
Confidence 9999999998863
No 36
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.57 E-value=1.1e-14 Score=129.17 Aligned_cols=90 Identities=17% Similarity=0.082 Sum_probs=76.7
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCC--ccEEEEecCCHHhHHHHHHHHHHhhcCCCCcc
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAKPLDTD 169 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~ 169 (202)
.|+++|.++++.++.|+++++.++||+|||++|++|+++.+..... +.++||++||++|+.|+.+++++++...
T Consensus 4 ~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~---- 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL---- 79 (555)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT----
T ss_pred CCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC----
Confidence 6999999999999999999999999999999999999999876432 5589999999999999999999998765
Q ss_pred cccccceEEEEEeCCccHHH
Q 028887 170 LEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 170 ~~~~~~~~~~~~~g~~~~~~ 189 (202)
++.+..++|+.....+
T Consensus 80 ----~~~~~~~~g~~~~~~~ 95 (555)
T 3tbk_A 80 ----GYNIASISGATSDSVS 95 (555)
T ss_dssp ----TCCEEEECTTTGGGSC
T ss_pred ----CcEEEEEcCCCcchhh
Confidence 3566666666544443
No 37
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.57 E-value=7.2e-15 Score=135.88 Aligned_cols=90 Identities=24% Similarity=0.272 Sum_probs=80.5
Q ss_pred HHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHh-HHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHh
Q 028887 72 LCQGHVPEHVLRRMEETGYVLPTDIQREALPV-LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 72 l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~-i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~L 150 (202)
|.+.++++.+.+.+.+.||..|+++|.++++. +..+++++++||||||||++|.+++++.+... +.+++|++|+++|
T Consensus 10 ~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~il~i~P~r~L 87 (715)
T 2va8_A 10 IEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN--GGKAIYVTPLRAL 87 (715)
T ss_dssp GGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHH
T ss_pred HHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHH
Confidence 55569999999999999999999999999999 78899999999999999999999999887632 2389999999999
Q ss_pred HHHHHHHHHHhhc
Q 028887 151 GMQVTKVARVLAA 163 (202)
Q Consensus 151 a~Q~~~~~~~l~~ 163 (202)
+.|+.++++.+..
T Consensus 88 a~q~~~~~~~~~~ 100 (715)
T 2va8_A 88 TNEKYLTFKDWEL 100 (715)
T ss_dssp HHHHHHHHGGGGG
T ss_pred HHHHHHHHHHhhc
Confidence 9999999965543
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.57 E-value=1.5e-14 Score=135.22 Aligned_cols=103 Identities=20% Similarity=0.157 Sum_probs=82.9
Q ss_pred HHHHHHHCCCCCCcHHHHHHHHhHHcC------CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHH
Q 028887 81 VLRRMEETGYVLPTDIQREALPVLFSS------RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154 (202)
Q Consensus 81 l~~~l~~~g~~~~t~~Q~~~i~~i~~g------~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~ 154 (202)
+.+.+..+|| .||++|.++++.++.+ ++++++|+||||||++|++|+++.+..+. +++|++||++|+.|+
T Consensus 358 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~---qvlvlaPtr~La~Q~ 433 (780)
T 1gm5_A 358 AEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF---QTAFMVPTSILAIQH 433 (780)
T ss_dssp HHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS---CEEEECSCHHHHHHH
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCcHHHHHHH
Confidence 3344578899 8999999999998765 58999999999999999999999998766 899999999999999
Q ss_pred HHHHHHhhcCCCCcccccccceEEEEEeCCccHHHHHHHHH
Q 028887 155 TKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHKSWLKV 195 (202)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~ 195 (202)
++.+++++... ++.+..++|+....++.+.++.
T Consensus 434 ~~~l~~~~~~~--------gi~v~~l~G~~~~~~r~~~~~~ 466 (780)
T 1gm5_A 434 YRRTVESFSKF--------NIHVALLIGATTPSEKEKIKSG 466 (780)
T ss_dssp HHHHHHHHTCS--------SCCEEECCSSSCHHHHHHHHHH
T ss_pred HHHHHHHhhhc--------CceEEEEeCCCCHHHHHHHHHH
Confidence 99999998754 3555555555554444444443
No 39
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.57 E-value=9.2e-15 Score=130.10 Aligned_cols=93 Identities=15% Similarity=0.119 Sum_probs=72.7
Q ss_pred CCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCC--ccEEEEecCCHHhHHHHHHHHHHhhcCCC
Q 028887 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAKPL 166 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~ 166 (202)
+...|+++|.++++.++.|+++++.++||+|||++|++|+++.+..... +.++||++||++|+.|+.+++++++...
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~- 82 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ- 82 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG-
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc-
Confidence 3457999999999999999999999999999999999999999876432 5589999999999999999999998754
Q ss_pred CcccccccceEEEEEeCCccHHH
Q 028887 167 DTDLEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~ 189 (202)
++.+..++|+.....+
T Consensus 83 -------~~~~~~~~g~~~~~~~ 98 (556)
T 4a2p_A 83 -------GYSVQGISGENFSNVS 98 (556)
T ss_dssp -------TCCEEECCCC-----C
T ss_pred -------CceEEEEeCCCCcchh
Confidence 3555555555544433
No 40
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.56 E-value=1e-14 Score=140.86 Aligned_cols=87 Identities=21% Similarity=0.163 Sum_probs=75.4
Q ss_pred HCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCC
Q 028887 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPL 166 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~ 166 (202)
..|| .|+++|.++++.++.|+|++++|+||||||++|+.+++..+..+ .++|||+||++|+.|+++++++++ ..
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~---~~~Lil~PtreLa~Q~~~~l~~l~-~~- 147 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKG---KKSALVFPTVTLVKQTLERLQKLA-DE- 147 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTT---CCEEEEESSHHHHHHHHHHHHTTS-CT-
T ss_pred hcCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcC---CeEEEEechHHHHHHHHHHHHHhh-CC-
Confidence 4688 69999999999999999999999999999999999998887444 489999999999999999999977 33
Q ss_pred CcccccccceEEEEEeCCcc
Q 028887 167 DTDLEHKLCTVMALLDGGML 186 (202)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~ 186 (202)
++.+..++||.+.
T Consensus 148 -------~i~v~~l~Gg~~~ 160 (1104)
T 4ddu_A 148 -------KVKIFGFYSSMKK 160 (1104)
T ss_dssp -------TSCEEEECTTCCT
T ss_pred -------CCeEEEEeCCCCH
Confidence 4666666766666
No 41
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.55 E-value=1.3e-14 Score=135.16 Aligned_cols=89 Identities=21% Similarity=0.134 Sum_probs=77.0
Q ss_pred HCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCC
Q 028887 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPL 166 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~ 166 (202)
.+|| .||++|..++|.++.|+ ++.++||+|||++|.+|++.....+. +++||+||++||.|+.+++..++...
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~---~vlVltptreLA~qd~e~~~~l~~~l- 151 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALTGK---GVHVVTVNEYLASRDAEQMGKIFEFL- 151 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHcCC---CEEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 4799 99999999999999999 99999999999999999985433333 89999999999999999999998876
Q ss_pred CcccccccceEEEEEeCCccHHH
Q 028887 167 DTDLEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~~~ 189 (202)
++++.+++||.+...+
T Consensus 152 -------gl~v~~i~gg~~~~~r 167 (844)
T 1tf5_A 152 -------GLTVGLNLNSMSKDEK 167 (844)
T ss_dssp -------TCCEEECCTTSCHHHH
T ss_pred -------CCeEEEEeCCCCHHHH
Confidence 5788888888765443
No 42
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.55 E-value=2.3e-14 Score=137.95 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=82.2
Q ss_pred HHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCC
Q 028887 86 EETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 86 ~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~ 165 (202)
..+||. | ++|.++|+.++.|+|++++|+||||||+ |.+|++..+.. .++++|||+||++|+.|+++++++++...
T Consensus 52 ~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~l~~~~ 126 (1054)
T 1gku_B 52 KCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRKYAEKA 126 (1054)
T ss_dssp TTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred HhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 357998 9 9999999999999999999999999998 88888887754 34589999999999999999999999765
Q ss_pred CCcccccccc----eEEEEEeCCccHHHHHHHHHhcC
Q 028887 166 LDTDLEHKLC----TVMALLDGGMLRRHKSWLKVLYS 198 (202)
Q Consensus 166 ~~~~~~~~~~----~~~~~~~g~~~~~~~~~l~~l~~ 198 (202)
++ .+..++||.....+.++++.+++
T Consensus 127 --------~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~ 155 (1054)
T 1gku_B 127 --------GVGTENLIGYYHGRIPKREKENFMQNLRN 155 (1054)
T ss_dssp --------CCSGGGSEEECCSSCCSHHHHHHHHSGGG
T ss_pred --------CCCccceEEEEeCCCChhhHHHHHhhccC
Confidence 34 55666666666666555555543
No 43
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.54 E-value=2.5e-14 Score=133.99 Aligned_cols=95 Identities=15% Similarity=0.103 Sum_probs=74.3
Q ss_pred HCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCC--ccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
-+|+..|+++|.++++.++.|++++++++||+|||++|++|+++.+..... +.++|||+||++|+.|+.+++++++..
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp -----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred hcCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 357889999999999999999999999999999999999999999876432 558999999999999999999999875
Q ss_pred CCCcccccccceEEEEEeCCccHHH
Q 028887 165 PLDTDLEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~g~~~~~~ 189 (202)
. ++.+..++||.....+
T Consensus 323 ~--------~~~v~~~~g~~~~~~~ 339 (797)
T 4a2q_A 323 Q--------GYSVQGISGENFSNVS 339 (797)
T ss_dssp G--------TCCEEEECCC-----C
T ss_pred C--------CceEEEEeCCcchhhh
Confidence 4 3566666666544443
No 44
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.54 E-value=2.4e-15 Score=138.92 Aligned_cols=84 Identities=21% Similarity=0.228 Sum_probs=74.6
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHH
Q 028887 77 VPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~ 156 (202)
+++.+.+.+.+.||..|+++|.++++.+..|+++++++|||||||++|.+++++.+..+. +++|++|+++|+.|+.+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~---~~l~i~P~r~La~q~~~ 86 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGG---KSLYVVPLRALAGEKYE 86 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTC---CEEEEESSHHHHHHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCC---cEEEEeCcHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999887544 89999999999999999
Q ss_pred HHHHhhc
Q 028887 157 VARVLAA 163 (202)
Q Consensus 157 ~~~~l~~ 163 (202)
+++.+..
T Consensus 87 ~~~~~~~ 93 (702)
T 2p6r_A 87 SFKKWEK 93 (702)
T ss_dssp HHTTTTT
T ss_pred HHHHHHh
Confidence 9965543
No 45
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.48 E-value=3.1e-14 Score=137.53 Aligned_cols=86 Identities=16% Similarity=0.138 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHH
Q 028887 75 GHVPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154 (202)
Q Consensus 75 ~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~ 154 (202)
.++.+.+...+...++..|+++|.++|+.+..|++++++|+||||||++|++|++..+..+. ++||++||++|+.|+
T Consensus 167 ~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~---rvlvl~PtraLa~Q~ 243 (1108)
T 3l9o_A 167 TPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKALSNQK 243 (1108)
T ss_dssp STTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHH
T ss_pred CCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCC---eEEEEcCcHHHHHHH
Confidence 34444444444445555799999999999999999999999999999999999999987666 999999999999999
Q ss_pred HHHHHHhhc
Q 028887 155 TKVARVLAA 163 (202)
Q Consensus 155 ~~~~~~l~~ 163 (202)
++.+++++.
T Consensus 244 ~~~l~~~~~ 252 (1108)
T 3l9o_A 244 YRELLAEFG 252 (1108)
T ss_dssp HHHHHHHTS
T ss_pred HHHHHHHhC
Confidence 999999876
No 46
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.47 E-value=1.2e-13 Score=108.56 Aligned_cols=76 Identities=18% Similarity=0.152 Sum_probs=65.8
Q ss_pred CCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhc---CCccEEEEecCCHHhHHH-HHHHHHHhhcC
Q 028887 89 GYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQ---RSAVQAVIVVPTRELGMQ-VTKVARVLAAK 164 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~---~~~~~~Lil~Ptr~La~Q-~~~~~~~l~~~ 164 (202)
+...|+++|.++++.++.++++++.++||+|||++|+.++++.+... ....++||++|+++|+.| +.+.++.+...
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~ 109 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 109 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTT
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhcc
Confidence 34479999999999999999999999999999999999998877542 224589999999999999 77889888765
No 47
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.46 E-value=9.1e-14 Score=129.44 Aligned_cols=86 Identities=26% Similarity=0.092 Sum_probs=74.9
Q ss_pred CCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCCC
Q 028887 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~ 167 (202)
+|. .|+++|..+++.++.|+ ++.++||+|||++|++|++.....+. +++||+||++||.|+.+++..++...
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~---~vlVltPTreLA~Q~~e~~~~l~~~l-- 142 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALTGK---GVHVVTVNDYLAQRDAENNRPLFEFL-- 142 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTTSS---CCEEEESSHHHHHHHHHHHHHHHHHT--
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHcCC---cEEEEcCCHHHHHHHHHHHHHHHHhc--
Confidence 465 89999999999999998 89999999999999999986554443 89999999999999999999999876
Q ss_pred cccccccceEEEEEeCCccH
Q 028887 168 TDLEHKLCTVMALLDGGMLR 187 (202)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~ 187 (202)
++++.+++||.+..
T Consensus 143 ------gl~v~~i~GG~~~~ 156 (853)
T 2fsf_A 143 ------GLTVGINLPGMPAP 156 (853)
T ss_dssp ------TCCEEECCTTCCHH
T ss_pred ------CCeEEEEeCCCCHH
Confidence 57888888886643
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.45 E-value=1.5e-13 Score=130.99 Aligned_cols=94 Identities=15% Similarity=0.111 Sum_probs=73.9
Q ss_pred CCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCC--ccEEEEecCCHHhHHHHHHHHHHhhcCC
Q 028887 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~Lil~Ptr~La~Q~~~~~~~l~~~~ 165 (202)
.|+..|+++|.++++.++.|+++++.++||+|||++|++|+++.+..... +.++|||+||++|+.|+++++++++...
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~ 323 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 323 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 36778999999999999999999999999999999999999988765321 4589999999999999999999998764
Q ss_pred CCcccccccceEEEEEeCCccHHH
Q 028887 166 LDTDLEHKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 166 ~~~~~~~~~~~~~~~~~g~~~~~~ 189 (202)
++.+..++||.....+
T Consensus 324 --------~~~v~~~~G~~~~~~~ 339 (936)
T 4a2w_A 324 --------GYSVQGISGENFSNVS 339 (936)
T ss_dssp --------TCCEEEECCC-----C
T ss_pred --------CceEEEEECCcchhhH
Confidence 3566666666544443
No 49
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.41 E-value=5.2e-13 Score=124.84 Aligned_cols=87 Identities=21% Similarity=0.099 Sum_probs=75.3
Q ss_pred HCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCC
Q 028887 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPL 166 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~ 166 (202)
.+|+ .|+++|..++|.++.|+ ++.++||+|||++|.+|++.....+. +++||+||++||.|+.+++..++...
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~---~v~VvTpTreLA~Qdae~m~~l~~~l- 179 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALAGN---GVHIVTVNDYLAKRDSEWMGRVHRFL- 179 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTTTS---CEEEEESSHHHHHHHHHHHHHHHHHT-
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHhCC---CeEEEeCCHHHHHHHHHHHHHHHhhc-
Confidence 3688 89999999999999998 99999999999999999975444444 79999999999999999999998876
Q ss_pred CcccccccceEEEEEeCCccH
Q 028887 167 DTDLEHKLCTVMALLDGGMLR 187 (202)
Q Consensus 167 ~~~~~~~~~~~~~~~~g~~~~ 187 (202)
++++.+++||.+..
T Consensus 180 -------GLsv~~i~gg~~~~ 193 (922)
T 1nkt_A 180 -------GLQVGVILATMTPD 193 (922)
T ss_dssp -------TCCEEECCTTCCHH
T ss_pred -------CCeEEEEeCCCCHH
Confidence 57877778776643
No 50
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.41 E-value=5.6e-13 Score=124.64 Aligned_cols=85 Identities=19% Similarity=0.094 Sum_probs=74.8
Q ss_pred CCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCCC
Q 028887 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~ 167 (202)
+|+ .|+++|..++|.++.|+ ++++.||+|||++|.+|++.....+. +++|++||++||.|..+++..++...
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~---qv~VvTPTreLA~Qdae~m~~l~~~l-- 147 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGK---GVHVVTVNDYLARRDAEWMGPVYRGL-- 147 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCS---CCEEEESSHHHHHHHHHHHHHHHHTT--
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCC---CEEEEeCCHHHHHHHHHHHHHHHHhc--
Confidence 699 89999999999999998 89999999999999999965444444 79999999999999999999999877
Q ss_pred cccccccceEEEEEeCCcc
Q 028887 168 TDLEHKLCTVMALLDGGML 186 (202)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~ 186 (202)
++++..++||.+.
T Consensus 148 ------GLsv~~i~Gg~~~ 160 (997)
T 2ipc_A 148 ------GLSVGVIQHASTP 160 (997)
T ss_dssp ------TCCEEECCTTCCH
T ss_pred ------CCeEEEEeCCCCH
Confidence 5787777777663
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.40 E-value=6.5e-13 Score=132.82 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=68.5
Q ss_pred CCCCCcHHHHHHHHhHHc-CCcEEEeccCCCchHHHHHHHHHHHHHhc--------CCccEEEEecCCHHhHHHHHHHHH
Q 028887 89 GYVLPTDIQREALPVLFS-SRDCILHAQTGSGKTLTYLLLIFSLVNAQ--------RSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~i~~-g~~~l~~a~TGsGKT~~~l~~~l~~l~~~--------~~~~~~Lil~Ptr~La~Q~~~~~~ 159 (202)
||++++++|.+++|.++. +++++++||||||||+++.+++++.+.+. ..+.++||++|+|+|+.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 799999999999999875 78999999999999999999999998652 235689999999999999999998
Q ss_pred HhhcCC
Q 028887 160 VLAAKP 165 (202)
Q Consensus 160 ~l~~~~ 165 (202)
+.+...
T Consensus 156 ~~~~~~ 161 (1724)
T 4f92_B 156 KRLATY 161 (1724)
T ss_dssp HHHTTT
T ss_pred HHHhhC
Confidence 877654
No 52
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.40 E-value=6.7e-13 Score=132.73 Aligned_cols=87 Identities=18% Similarity=0.237 Sum_probs=74.5
Q ss_pred CCCHHHHHHHHHCCCCCCcHHHHHHHHhHHcC-CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHH
Q 028887 76 HVPEHVLRRMEETGYVLPTDIQREALPVLFSS-RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQV 154 (202)
Q Consensus 76 gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g-~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~ 154 (202)
.+.+...+.+...+|..++|+|.++++.++++ ++++++||||||||++|.+|+++.+.... +.+++|++|+|+|+.|+
T Consensus 910 ~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~-~~kavyi~P~raLa~q~ 988 (1724)
T 4f92_B 910 ALRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSS-EGRCVYITPMEALAEQV 988 (1724)
T ss_dssp GSCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCT-TCCEEEECSCHHHHHHH
T ss_pred cccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCC-CCEEEEEcChHHHHHHH
Confidence 34556677787889999999999999999764 67999999999999999999999987643 33799999999999999
Q ss_pred HHHHHHhhc
Q 028887 155 TKVARVLAA 163 (202)
Q Consensus 155 ~~~~~~l~~ 163 (202)
++.+++.+.
T Consensus 989 ~~~~~~~f~ 997 (1724)
T 4f92_B 989 YMDWYEKFQ 997 (1724)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999876554
No 53
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.40 E-value=1.1e-12 Score=125.78 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=67.5
Q ss_pred HCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhc
Q 028887 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~ 163 (202)
..+|. |+++|.++++.+..|+++++++|||+|||++|.++++..+..+. ++||++|+++|+.|+++.++++++
T Consensus 82 ~~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~---rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 82 TYPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQ---RVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp CCSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTC---EEEEEESSHHHHHHHHHHHHHHHS
T ss_pred hCCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCC---eEEEECChHHHHHHHHHHHHHHhC
Confidence 45774 99999999999999999999999999999999999999887655 999999999999999999999876
No 54
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.38 E-value=4.9e-13 Score=122.84 Aligned_cols=87 Identities=18% Similarity=0.180 Sum_probs=70.6
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC---CccEEEEecCCHHhHHHH-HHHHHHhhcCCCC
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---SAVQAVIVVPTRELGMQV-TKVARVLAAKPLD 167 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~---~~~~~Lil~Ptr~La~Q~-~~~~~~l~~~~~~ 167 (202)
.|+++|.++++.++.|+++++.++||+|||++|++|+++.+..+. .+.++||++|+++|+.|+ .++++++++..
T Consensus 7 ~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~~-- 84 (699)
T 4gl2_A 7 QLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKW-- 84 (699)
T ss_dssp CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTTT--
T ss_pred CccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCcC--
Confidence 699999999999999999999999999999999999999876542 124799999999999999 99999998752
Q ss_pred cccccccceEEEEEeCCccH
Q 028887 168 TDLEHKLCTVMALLDGGMLR 187 (202)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~~~ 187 (202)
+.+..+.|+....
T Consensus 85 -------~~v~~~~g~~~~~ 97 (699)
T 4gl2_A 85 -------YRVIGLSGDTQLK 97 (699)
T ss_dssp -------SCEEEEC----CC
T ss_pred -------ceEEEEeCCcchh
Confidence 4455555554443
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.37 E-value=1.4e-12 Score=115.73 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=64.6
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
.|++.|.++++.++.+++++++++||+|||++|+.++...+..++ .++|||+|+++|+.|+.+.+++++..
T Consensus 113 ~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp CCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHCS--SEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCCC--CeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 799999999999999999999999999999999999988886433 38999999999999999999988654
No 56
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.36 E-value=2.1e-12 Score=106.57 Aligned_cols=71 Identities=24% Similarity=0.205 Sum_probs=63.2
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
.|+++|.++++.++.+.+.+++++||+|||++++.++...+..+. .++||++|+++|+.|+.+++++++..
T Consensus 113 ~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~--~~~lil~Pt~~L~~q~~~~l~~~~~~ 183 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYE--GKILIIVPTTALTTQMADDFVDYRLF 183 (282)
T ss_dssp CCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCS--SEEEEECSSHHHHHHHHHHHHHHTSC
T ss_pred CccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCC--CeEEEEECCHHHHHHHHHHHHHhccc
Confidence 799999999999988888999999999999999998887776432 37999999999999999999998754
No 57
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.35 E-value=8.3e-12 Score=121.11 Aligned_cols=86 Identities=22% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCCHHHHHHH-HHCCCCCCcHHHHHHHHhHHc----CC--cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCH
Q 028887 76 HVPEHVLRRM-EETGYVLPTDIQREALPVLFS----SR--DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 76 gl~~~l~~~l-~~~g~~~~t~~Q~~~i~~i~~----g~--~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr 148 (202)
+.++...+.+ ..+||+ +|++|.++++.++. |+ |++++++||+|||++|+.+++..+..+. +++|++||+
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~---~vlvlvPt~ 662 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHK---QVAVLVPTT 662 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTC---EEEEECSSH
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCC---eEEEEechH
Confidence 3455555555 456885 79999999999876 65 9999999999999999999988876655 999999999
Q ss_pred HhHHHHHHHHHHhhcCC
Q 028887 149 ELGMQVTKVARVLAAKP 165 (202)
Q Consensus 149 ~La~Q~~~~~~~l~~~~ 165 (202)
+|+.|+++.+++.+...
T Consensus 663 ~La~Q~~~~~~~~~~~~ 679 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANW 679 (1151)
T ss_dssp HHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999887654
No 58
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.34 E-value=3.4e-12 Score=122.26 Aligned_cols=73 Identities=18% Similarity=0.126 Sum_probs=65.8
Q ss_pred HCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhc
Q 028887 87 ETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~ 163 (202)
..+| .|+++|.++|+.++.|+++++.+|||+|||++|++++...+..+. ++||++|+++|+.|+++++++++.
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~---~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMT---KTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTC---EEEEEESCGGGHHHHHHHHHTTC-
T ss_pred hCCC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCC---eEEEEeCCHHHHHHHHHHHHHHcC
Confidence 3566 489999999999999999999999999999999999988876655 899999999999999999998764
No 59
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.29 E-value=1.6e-11 Score=106.20 Aligned_cols=86 Identities=21% Similarity=0.254 Sum_probs=70.5
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccc
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLE 171 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~ 171 (202)
.|+++|.++++.++.+ ++++.++||+|||++++.+++..+.. .+.++||++|+++|+.|+.++++++++..
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~--~~~~~liv~P~~~L~~q~~~~~~~~~~~~------ 79 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK--YGGKVLMLAPTKPLVLQHAESFRRLFNLP------ 79 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH--SCSCEEEECSSHHHHHHHHHHHHHHBCSC------
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHHhCcc------
Confidence 6899999999999999 99999999999999999999888762 23479999999999999999999997542
Q ss_pred cccceEEEEEeCCccHHH
Q 028887 172 HKLCTVMALLDGGMLRRH 189 (202)
Q Consensus 172 ~~~~~~~~~~~g~~~~~~ 189 (202)
... +.+++|.....+
T Consensus 80 --~~~-v~~~~g~~~~~~ 94 (494)
T 1wp9_A 80 --PEK-IVALTGEKSPEE 94 (494)
T ss_dssp --GGG-EEEECSCSCHHH
T ss_pred --hhh-eEEeeCCcchhh
Confidence 123 455566554443
No 60
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.27 E-value=1.3e-11 Score=108.42 Aligned_cols=64 Identities=30% Similarity=0.303 Sum_probs=58.9
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
.|++.|.++++.++.+++++++++||+|||++|+.++... +. ++||++|+++|+.|+.++++++
T Consensus 93 ~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~---~~---~~Lvl~P~~~L~~Q~~~~~~~~ 156 (472)
T 2fwr_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---ST---PTLIVVPTLALAEQWKERLGIF 156 (472)
T ss_dssp CBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH---CS---CEEEEESSHHHHHHHHHHGGGG
T ss_pred CcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc---CC---CEEEEECCHHHHHHHHHHHHhC
Confidence 6999999999999999999999999999999999998764 33 7999999999999999999884
No 61
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.26 E-value=9.9e-13 Score=115.80 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=60.8
Q ss_pred CCCCCcHHHHHHHHhHHcCCcE-EEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 89 GYVLPTDIQREALPVLFSSRDC-ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~i~~g~~~-l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
|+..|+++|+ +||.++.|+++ +++++||||||++|++|++..+.. .+.++||++|||+|+.|+.+.++.+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g~ 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALRGL 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTTS
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhcCc
Confidence 7888999986 79999999887 999999999999999999887654 2358999999999999999988643
No 62
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.23 E-value=3.4e-11 Score=96.93 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=69.1
Q ss_pred CHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCC--ccEEEEecCCHHhHHHHH
Q 028887 78 PEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRS--AVQAVIVVPTRELGMQVT 155 (202)
Q Consensus 78 ~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~--~~~~Lil~Ptr~La~Q~~ 155 (202)
.+.+.+.....+.-.++++|.++++.+..|+++++.|+||||||.++.+++++.....+. .++++++.|+++|+.|+.
T Consensus 47 ~~~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~ 126 (235)
T 3llm_A 47 DHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVA 126 (235)
T ss_dssp CHHHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHH
T ss_pred CHHHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHH
Confidence 334333333333335799999999999999999999999999999999999887665443 568999999999999999
Q ss_pred HHHHHhhcC
Q 028887 156 KVARVLAAK 164 (202)
Q Consensus 156 ~~~~~l~~~ 164 (202)
+.+......
T Consensus 127 ~~~~~~~~~ 135 (235)
T 3llm_A 127 ERVAFERGE 135 (235)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHhcc
Confidence 888766543
No 63
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.22 E-value=5.3e-13 Score=123.07 Aligned_cols=75 Identities=21% Similarity=0.353 Sum_probs=62.5
Q ss_pred HHHCCCC-----CCcHHHH-----HHHHhHH------cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCH
Q 028887 85 MEETGYV-----LPTDIQR-----EALPVLF------SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 85 l~~~g~~-----~~t~~Q~-----~~i~~i~------~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr 148 (202)
+..+||. .||++|+ ++||.++ .|+|++++++||||||++|++|+++.+.. .+.++|||+||+
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPTr 280 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPTR 280 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESSH
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccHH
Confidence 3455666 8999999 9999988 89999999999999999999999988654 235899999999
Q ss_pred HhHHHHHHHHHHh
Q 028887 149 ELGMQVTKVARVL 161 (202)
Q Consensus 149 ~La~Q~~~~~~~l 161 (202)
+||.|+++.++.+
T Consensus 281 ~La~Q~~~~l~~~ 293 (673)
T 2wv9_A 281 VVAAEMAEALRGL 293 (673)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988755
No 64
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.20 E-value=2.2e-12 Score=117.90 Aligned_cols=80 Identities=16% Similarity=0.190 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHCCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHH
Q 028887 77 VPEHVLRRMEETGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTK 156 (202)
Q Consensus 77 l~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~ 156 (202)
+.+.+++.+... ...++|+|+.+++.+++|+|+++.++||||||++|++|+++.+.. .+.++|||+|||+|+.|+.+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~ 233 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEE 233 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHH
Confidence 444444444332 478899988889999999999999999999999999999988765 34589999999999999998
Q ss_pred HHH
Q 028887 157 VAR 159 (202)
Q Consensus 157 ~~~ 159 (202)
.++
T Consensus 234 ~l~ 236 (618)
T 2whx_A 234 ALR 236 (618)
T ss_dssp HTT
T ss_pred Hhc
Confidence 886
No 65
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.19 E-value=2.2e-11 Score=109.73 Aligned_cols=70 Identities=26% Similarity=0.174 Sum_probs=60.3
Q ss_pred CCCCCcHHHHHHHHh----HHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 89 GYVLPTDIQREALPV----LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~----i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
|| .+++.|.+.+.. +..|+++++.+|||+|||++|++|++. .+ .+++|++||++|+.|+.+.++.+...
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~~---~~v~i~~pt~~l~~q~~~~~~~l~~~ 73 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE---VK---PKVLFVVRTHNEFYPIYRDLTKIREK 73 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH---HC---SEEEEEESSGGGHHHHHHHHTTCCCS
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh---CC---CeEEEEcCCHHHHHHHHHHHHHHhhh
Confidence 45 689999997765 457999999999999999999999987 23 38999999999999999999888655
Q ss_pred C
Q 028887 165 P 165 (202)
Q Consensus 165 ~ 165 (202)
.
T Consensus 74 ~ 74 (551)
T 3crv_A 74 R 74 (551)
T ss_dssp S
T ss_pred c
Confidence 3
No 66
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.17 E-value=1.3e-10 Score=93.98 Aligned_cols=64 Identities=30% Similarity=0.304 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
.|+++|.+++..++.+++++++++||+|||.+++.++... + .+++|++|+++|+.|+.+.++++
T Consensus 93 ~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~---~---~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 93 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL---S---TPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS---C---SCEEEEESSHHHHHHHHHHHGGG
T ss_pred CcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc---C---CCEEEEeCCHHHHHHHHHHHHhC
Confidence 7899999999999999999999999999999998887653 2 37999999999999999999874
No 67
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.15 E-value=3.9e-11 Score=109.70 Aligned_cols=84 Identities=24% Similarity=0.210 Sum_probs=67.3
Q ss_pred CCcHHHHHHHHh----HHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCCC
Q 028887 92 LPTDIQREALPV----LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLD 167 (202)
Q Consensus 92 ~~t~~Q~~~i~~----i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~ 167 (202)
.|++.|.+.+.. +.+|+++++.+|||+|||++|++|++..+... +.+++|++||++|+.|+.+.++.+....
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~-- 78 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTM-- 78 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHS--
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhcc--
Confidence 578999888864 56899999999999999999999999987642 2489999999999999999999887643
Q ss_pred cccccccceEEEEEeCCc
Q 028887 168 TDLEHKLCTVMALLDGGM 185 (202)
Q Consensus 168 ~~~~~~~~~~~~~~~g~~ 185 (202)
.++++.+.|+.+
T Consensus 79 ------~~~~~~l~gr~~ 90 (620)
T 4a15_A 79 ------KIRAIPMQGRVN 90 (620)
T ss_dssp ------CCCEEECCCHHH
T ss_pred ------CeEEEEEECCCc
Confidence 355555555543
No 68
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.02 E-value=5.1e-10 Score=100.68 Aligned_cols=67 Identities=25% Similarity=0.253 Sum_probs=54.3
Q ss_pred CCCCCCcHHHHHHHHh----HHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 88 TGYVLPTDIQREALPV----LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~----i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
.|| .|+++|.+++.. +..|+++++.+|||+|||++|++|++.. +. +++|++||++|+.|+.+.++.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~---~~---~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL---KK---KVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH---TC---EEEEEESCHHHHHHHHHHHGGG
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC---CC---cEEEEcCCHHHHHHHHHHHHhc
Confidence 467 799999998754 4688999999999999999999998652 33 8999999999999999888775
No 69
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.02 E-value=1.1e-10 Score=102.93 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=49.2
Q ss_pred HhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHH
Q 028887 102 PVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARV 160 (202)
Q Consensus 102 ~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~ 160 (202)
..+..|++++++++||||||++|++|+++.+.. .+.++||++|||+|+.|+.++++.
T Consensus 16 ~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g 72 (459)
T 2z83_A 16 NMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRG 72 (459)
T ss_dssp GGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTT
T ss_pred HHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcC
Confidence 345678999999999999999999999988764 235899999999999999998873
No 70
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.00 E-value=1.5e-10 Score=101.61 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=50.1
Q ss_pred hHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 103 VLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 103 ~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
.+++|+|++++|+||||||++|++|+++.+..+ +.+++|++||++|+.|+++.++.+
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~ 60 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL 60 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC
Confidence 357899999999999999999999999977653 358999999999999999988754
No 71
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=98.89 E-value=9.7e-10 Score=96.18 Aligned_cols=52 Identities=23% Similarity=0.332 Sum_probs=44.3
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 159 (202)
.|++++++++||||||++|++|+++.+... +.+++|++||++|+.|+++.++
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~--g~~~lvl~Pt~~La~Q~~~~~~ 52 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKK--RLRTVILAPTRVVASEMYEALR 52 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhC--CCCEEEECcHHHHHHHHHHHhC
Confidence 378999999999999999999999655432 2489999999999999998875
No 72
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.89 E-value=2e-09 Score=100.67 Aligned_cols=91 Identities=20% Similarity=0.270 Sum_probs=71.2
Q ss_pred HHHHHhCCCCHHHHHHHHHCCCCCCcHHHHHHHHhHHc-CCcEEEeccCCCchHHHHHHHHHHHHH--hcCCccEEEEec
Q 028887 69 LRELCQGHVPEHVLRRMEETGYVLPTDIQREALPVLFS-SRDCILHAQTGSGKTLTYLLLIFSLVN--AQRSAVQAVIVV 145 (202)
Q Consensus 69 ~~~l~~~gl~~~l~~~l~~~g~~~~t~~Q~~~i~~i~~-g~~~l~~a~TGsGKT~~~l~~~l~~l~--~~~~~~~~Lil~ 145 (202)
...|.+.++++.+.+.+...| ..|+++|+++|+.++. |+++++.|+||+|||+ ++|++-... ....+.++++++
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~ 147 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQ 147 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEE
T ss_pred CCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecC
Confidence 445677799999999998888 6899999999988765 5789999999999999 455542221 111245799999
Q ss_pred CCHHhHHHHHHHHHHhh
Q 028887 146 PTRELGMQVTKVARVLA 162 (202)
Q Consensus 146 Ptr~La~Q~~~~~~~l~ 162 (202)
|+++|+.|+.+++....
T Consensus 148 P~r~La~q~~~~l~~~~ 164 (773)
T 2xau_A 148 PRRVAAMSVAQRVAEEM 164 (773)
T ss_dssp SCHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHh
Confidence 99999999998876554
No 73
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=98.86 E-value=1.3e-09 Score=98.59 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=47.4
Q ss_pred CCcHHHHHHHHhHHc----C-CcEEEeccCCCchHHHHHHHHHHHHHhc------CCccEEEEecCCHHhHHHHH-HHHH
Q 028887 92 LPTDIQREALPVLFS----S-RDCILHAQTGSGKTLTYLLLIFSLVNAQ------RSAVQAVIVVPTRELGMQVT-KVAR 159 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~----g-~~~l~~a~TGsGKT~~~l~~~l~~l~~~------~~~~~~Lil~Ptr~La~Q~~-~~~~ 159 (202)
.|+++|.++++.++. | ++++++++||+|||++++..+...+..+ ....++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999998865 4 6689999999999999766554444432 14568999999999999999 7777
Q ss_pred Hhhc
Q 028887 160 VLAA 163 (202)
Q Consensus 160 ~l~~ 163 (202)
.++.
T Consensus 258 ~~~~ 261 (590)
T 3h1t_A 258 PFGD 261 (590)
T ss_dssp TTCS
T ss_pred hcch
Confidence 6653
No 74
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=98.83 E-value=4.5e-09 Score=100.95 Aligned_cols=72 Identities=22% Similarity=0.188 Sum_probs=59.8
Q ss_pred CCcHHHHHHHHhHHc--------------CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHH
Q 028887 92 LPTDIQREALPVLFS--------------SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~--------------g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~ 157 (202)
.|+++|..|++.++. ++++++.++||||||+++ ++++..+.......++|||+|+++|+.|+.+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 599999999998765 368999999999999997 56666554433345899999999999999999
Q ss_pred HHHhhcC
Q 028887 158 ARVLAAK 164 (202)
Q Consensus 158 ~~~l~~~ 164 (202)
++.++..
T Consensus 350 f~~f~~~ 356 (1038)
T 2w00_A 350 YQRFSPD 356 (1038)
T ss_dssp HHTTSTT
T ss_pred HHHhccc
Confidence 9988753
No 75
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=98.83 E-value=7.2e-10 Score=101.80 Aligned_cols=66 Identities=17% Similarity=0.071 Sum_probs=53.4
Q ss_pred CcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 93 ~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
+...|+++++.+.++++++++|+||||||.+|.+++++ .+ .++||++|||+||.|+.+++.+..+.
T Consensus 218 ~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~---~g---~~vLVl~PTReLA~Qia~~l~~~~g~ 283 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA---QG---YKVLVLNPSVAATLGFGAYMSKAHGI 283 (666)
T ss_dssp SCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH---TT---CCEEEEESCHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH---CC---CeEEEEcchHHHHHHHHHHHHHHhCC
Confidence 34455555555668899999999999999999999876 23 38999999999999999988776653
No 76
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=98.67 E-value=3e-08 Score=91.41 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=42.1
Q ss_pred HcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
+.|++++++||||||||+ ++++.+...+ +++|++|||+||.|+++++++++
T Consensus 153 l~rk~vlv~apTGSGKT~----~al~~l~~~~---~gl~l~PtR~LA~Qi~~~l~~~g 203 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTY----HAIQKYFSAK---SGVYCGPLKLLAHEIFEKSNAAG 203 (677)
T ss_dssp SCCEEEEEECCTTSSHHH----HHHHHHHHSS---SEEEEESSHHHHHHHHHHHHHTT
T ss_pred cCCCEEEEEcCCCCCHHH----HHHHHHHhcC---CeEEEeCHHHHHHHHHHHHHhcC
Confidence 578899999999999998 4444554444 46999999999999999998863
No 77
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=98.63 E-value=1.2e-07 Score=83.61 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=57.0
Q ss_pred CCcHHHHHHHHhH----HcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 92 LPTDIQREALPVL----FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~i----~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
.|+|+|.++++.+ ..+.++++..+||+|||+..+..+...... ....++||+|| .+|+.||.++++++++.
T Consensus 37 ~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~-~~~~~~LIv~P-~~l~~qw~~e~~~~~~~ 111 (500)
T 1z63_A 37 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE-NELTPSLVICP-LSVLKNWEEELSKFAPH 111 (500)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT-TCCSSEEEEEC-STTHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc-CCCCCEEEEcc-HHHHHHHHHHHHHHCCC
Confidence 6899999999876 457899999999999999976655444433 33347999999 57999999999998754
No 78
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=98.52 E-value=1.7e-07 Score=89.54 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCcHHHHHHHHhHHc--CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhc
Q 028887 92 LPTDIQREALPVLFS--SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~--g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~ 163 (202)
.|+|+|.+++..++. +..+++..+||+|||.+++..+...+..+.. .++|||||+ +|+.||.+.+.+.++
T Consensus 153 ~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~-~rvLIVvP~-sLl~Qw~~E~~~~f~ 224 (968)
T 3dmq_A 153 SLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAA-ERVLIIVPE-TLQHQWLVEMLRRFN 224 (968)
T ss_dssp CCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSC-CCEEEECCT-TTHHHHHHHHHHHSC
T ss_pred CCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCC-CeEEEEeCH-HHHHHHHHHHHHHhC
Confidence 689999999998776 4579999999999999998888777765443 369999999 999999999977664
No 79
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.31 E-value=2.2e-06 Score=80.35 Aligned_cols=72 Identities=24% Similarity=0.199 Sum_probs=59.5
Q ss_pred CCcHHHHHHHHhHH----cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 92 LPTDIQREALPVLF----SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~----~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
.+.+.|.+++..+. .+.++++..++|.|||+..+..+...+........+||+|| .+|+.||.+.+.++++.
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPD 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTT
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCC
Confidence 57899999998765 78899999999999999987777665544443346899999 88999999999999854
No 80
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.25 E-value=4.8e-06 Score=76.25 Aligned_cols=72 Identities=25% Similarity=0.381 Sum_probs=58.4
Q ss_pred CCcHHHHHHHHhHH---------cCCcEEEeccCCCchHHHHHHHHHHHHHhcC----CccEEEEecCCHHhHHHHHHHH
Q 028887 92 LPTDIQREALPVLF---------SSRDCILHAQTGSGKTLTYLLLIFSLVNAQR----SAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~---------~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~----~~~~~Lil~Ptr~La~Q~~~~~ 158 (202)
.+.|+|.+++..+. .+...++..++|.|||+..+..+...+..+. ...++||++|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 68999999998863 4567899999999999998887776665432 12358999996 8999999999
Q ss_pred HHhhcC
Q 028887 159 RVLAAK 164 (202)
Q Consensus 159 ~~l~~~ 164 (202)
.++++.
T Consensus 134 ~~~~~~ 139 (644)
T 1z3i_X 134 GKWLGG 139 (644)
T ss_dssp HHHHGG
T ss_pred HHHcCC
Confidence 999864
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.23 E-value=4.2e-06 Score=77.44 Aligned_cols=81 Identities=19% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCCCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCCC
Q 028887 88 TGYVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLD 167 (202)
Q Consensus 88 ~g~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~ 167 (202)
+|. .|+++|-...-.+..|+ +....||+|||+++.+|++-....++ .+.|++|+..||.|-.+++..+....
T Consensus 72 lg~-r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~G~---~vhVvT~ndyLA~rdae~m~~l~~~L-- 143 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALIGK---GVHLVTVNDYLARRDALWMGPVYLFL-- 143 (822)
T ss_dssp TSC-CCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTTSS---CEEEEESSHHHHHHHHHHHHHHHHHT--
T ss_pred hCC-CCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhcCC---ceEEEeccHHHHHhHHHHHHHHHHHh--
Confidence 576 68999999988888887 88999999999999999975544455 79999999999999999998888876
Q ss_pred cccccccceEEEEEe
Q 028887 168 TDLEHKLCTVMALLD 182 (202)
Q Consensus 168 ~~~~~~~~~~~~~~~ 182 (202)
++++.++++
T Consensus 144 ------glsvg~i~~ 152 (822)
T 3jux_A 144 ------GLRVGVINS 152 (822)
T ss_dssp ------TCCEEEEET
T ss_pred ------CCEEEEEcC
Confidence 577777776
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.17 E-value=2.3e-06 Score=77.91 Aligned_cols=67 Identities=19% Similarity=0.265 Sum_probs=56.1
Q ss_pred cHHHHHHHHhHHcCCcEEEeccCCCchH--HHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 94 TDIQREALPVLFSSRDCILHAQTGSGKT--LTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 94 t~~Q~~~i~~i~~g~~~l~~a~TGsGKT--~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
++.|+.+++.++.++++++.|++||||| ++++++.+..+.. ..+.++++++||.+.+.++.+.+...
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~-~~~~~vll~APTg~AA~~L~e~~~~~ 219 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD-GERCRIRLAAPTGKAAARLTESLGKA 219 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS-SCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh-cCCCeEEEEeCChhHHHHHHHHHHHH
Confidence 7899999999999999999999999999 6677777765532 23458999999999999998877654
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.92 E-value=3.6e-05 Score=70.41 Aligned_cols=68 Identities=21% Similarity=0.282 Sum_probs=57.5
Q ss_pred CCcHHHHHHHHhHHcCCc-EEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 92 LPTDIQREALPVLFSSRD-CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~-~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
.+++.|.+|+..++..++ .+++||+|||||.+....+.+.+..+. ++|+.+||..=+.++.+++....
T Consensus 189 ~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~---~ILv~a~TN~AvD~i~erL~~~~ 257 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGL---KVLCCAPSNIAVDNLVERLALCK 257 (646)
T ss_dssp TCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTC---CEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEcCchHHHHHHHHHHHhcC
Confidence 478999999999887654 799999999999998777777776655 89999999999999988886654
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.66 E-value=0.00013 Score=66.55 Aligned_cols=70 Identities=16% Similarity=0.185 Sum_probs=55.5
Q ss_pred CCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 90 YVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 90 ~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
...+++.|..++..++.+..++++||+|||||.+....+...+.. .+.++|+++||..-+.++.+++.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 346899999999998888889999999999998765544333321 2337999999999999998888754
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.64 E-value=0.00018 Score=67.52 Aligned_cols=70 Identities=16% Similarity=0.289 Sum_probs=56.9
Q ss_pred CCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHH-hcCCccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 90 YVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVN-AQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 90 ~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~-~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
+..+++.|.+|+..++.+..++++||.|||||.+....+...+. .+. ++|+++||..-+.++.+++.+.+
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~---~ILv~a~tn~A~d~l~~rL~~~g 428 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKD---RILVCAPSNVAVDHLAAKLRDLG 428 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCC---CEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCC---eEEEEcCcHHHHHHHHHHHHhhC
Confidence 34689999999999988778899999999999886555444443 334 79999999999999999987753
No 86
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.55 E-value=0.00024 Score=64.36 Aligned_cols=72 Identities=24% Similarity=0.217 Sum_probs=59.0
Q ss_pred CCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC-CccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-SAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 91 ~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~-~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
..+++.|.+++.. .+..++|.|+.|||||.+.+.-+...+..++ ..-++|++++|+..+.++.+++.++.+.
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 4689999999973 3567999999999999998887777776533 3347999999999999999999888653
No 87
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.43 E-value=0.00025 Score=65.16 Aligned_cols=69 Identities=29% Similarity=0.362 Sum_probs=54.2
Q ss_pred CCCCCcHHHHHHHHhHH----cCC-cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhc
Q 028887 89 GYVLPTDIQREALPVLF----SSR-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 89 g~~~~t~~Q~~~i~~i~----~g~-~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~ 163 (202)
+| .|++.|..++..+. .|. ..++.|.||||||.+..-.+ ... ++ .+|||+|+..+|.|+++.++.+++
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~~~-~~~--~~---~~lvv~~~~~~A~ql~~el~~~~~ 78 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVI-EAL--GR---PALVLAPNKILAAQLAAEFRELFP 78 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH--TC---CEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHHHH-HHh--CC---CEEEEecCHHHHHHHHHHHHHHCC
Confidence 56 79999999988654 343 46788999999998775433 322 23 489999999999999999999975
Q ss_pred C
Q 028887 164 K 164 (202)
Q Consensus 164 ~ 164 (202)
.
T Consensus 79 ~ 79 (664)
T 1c4o_A 79 E 79 (664)
T ss_dssp T
T ss_pred C
Confidence 4
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.42 E-value=0.00038 Score=65.31 Aligned_cols=69 Identities=16% Similarity=0.188 Sum_probs=54.4
Q ss_pred CCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 91 ~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
..+++.|.+++..++.+...+++||+|||||.+....+...+.. .+.++|+++||..-+.++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 46799999999998888889999999999998765444333321 2337999999999999988887654
No 89
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.23 E-value=0.00075 Score=61.79 Aligned_cols=71 Identities=20% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHh-cCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~-~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
.+++.|.+++.. .+..++|.|..|||||.+...-+...+.. +-...++|+++.|+..+.++.+++..+.+.
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 478999999865 35678999999999999988777777765 323457999999999999999999887653
No 90
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.17 E-value=0.0011 Score=57.98 Aligned_cols=70 Identities=14% Similarity=0.261 Sum_probs=50.5
Q ss_pred HCCCCCCcHHHHHHHHhHHcC----C-cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHH
Q 028887 87 ETGYVLPTDIQREALPVLFSS----R-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 87 ~~g~~~~t~~Q~~~i~~i~~g----~-~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~ 158 (202)
.+.|..+++.|++++..++.. . .+++.|+.|||||.+. ..++..+...+. ..+++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHHhhh
Confidence 457889999999999876432 3 8999999999999654 344444443322 25889999988887666543
No 91
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.16 E-value=0.0013 Score=59.53 Aligned_cols=63 Identities=21% Similarity=0.254 Sum_probs=48.9
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHH
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~ 157 (202)
.+++.|..++..++.+..+++.|+.|+|||.... .++..+... +.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAESL--GLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHHT--TCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHhc--CCeEEEecCcHHHHHHhHhh
Confidence 4789999999999999999999999999997643 333433332 23789999999888877653
No 92
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=97.05 E-value=0.0012 Score=64.64 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=58.0
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC---CccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR---SAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~---~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
.+|+.|.++|..- +.+++|.|..|||||.+.+-=++..+..+. ..-++|++++|+..+..+.+++....
T Consensus 10 ~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l 81 (1232)
T 3u4q_A 10 TWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEAL 81 (1232)
T ss_dssp CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHH
Confidence 5899999998653 789999999999999998888888776643 34479999999999999998887643
No 93
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.03 E-value=0.0022 Score=59.37 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=57.9
Q ss_pred CCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC-CccEEEEecCCHHhHHHHHHHHHHhhc
Q 028887 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR-SAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 91 ~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~-~~~~~Lil~Ptr~La~Q~~~~~~~l~~ 163 (202)
..+++.|.+++.. .+..++|.|..|||||.+...-+...+...+ ..-++|+++.|+..|.++.+++..+.+
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 4689999999865 3567899999999999998877777776432 344799999999999999999988754
No 94
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.31 E-value=0.0079 Score=55.16 Aligned_cols=67 Identities=24% Similarity=0.302 Sum_probs=51.6
Q ss_pred CCcHHHHHHHHhHH----cCC-cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 92 LPTDIQREALPVLF----SSR-DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~----~g~-~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
.|+..|..++..+. .|. ..++.|.||||||.+..-.+ ... ++ .+|||+|+..+|.|+++.++.+++.
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~~~-~~~--~~---~~lvv~~~~~~A~~l~~el~~~~~~ 83 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSNLI-KEV--NK---PTLVIAHNKTLAGQLYSEFKEFFPN 83 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHH--CC---CEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHHHH-HHh--CC---CEEEEECCHHHHHHHHHHHHHHcCC
Confidence 68999998887654 343 46788999999997764333 322 23 4899999999999999999999754
No 95
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.11 E-value=0.057 Score=40.41 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=24.4
Q ss_pred cHHHHHHHHhHH---------cCCcEEEeccCCCchHHHHHH
Q 028887 94 TDIQREALPVLF---------SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 94 t~~Q~~~i~~i~---------~g~~~l~~a~TGsGKT~~~l~ 126 (202)
++.|+.++..+. .|+.+++.||+|+|||...-.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHH
Confidence 456777665542 468899999999999976543
No 96
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.04 E-value=0.12 Score=46.63 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=58.3
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCC
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKP 165 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~ 165 (202)
.+++.|...+..+...+.+++..+-|+|||.+...-++..+... .+..++++.|+++.|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~-~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS-SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 58999999998775567899999999999998765555444432 24479999999999999998888887654
No 97
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.91 E-value=0.14 Score=43.91 Aligned_cols=72 Identities=17% Similarity=0.162 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcC
Q 028887 92 LPTDIQREALPVLFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAK 164 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~ 164 (202)
.++|.|...+..+...+.+++..+-+.|||.+....++..+.. ..+..+++++|+++.|..+.+.++.+...
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~-~~g~~v~~vA~t~~qA~~vf~~i~~mi~~ 234 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCF-NKDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHS-SSSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHh-CCCCeEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 6899999999876555778999999999999877665554332 23447999999999999888888877653
No 98
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.11 E-value=0.14 Score=39.88 Aligned_cols=52 Identities=17% Similarity=0.230 Sum_probs=34.0
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
.|.-+++.|++|+|||...+.-+......+. .++++.-. +-..++.+++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~---~v~~~~~e-~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGE---PGIYVALE-EHPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTC---CEEEEESS-SCHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEEcc-CCHHHHHHHHHHc
Confidence 4677899999999999876555444444443 57776643 3345666666543
No 99
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.80 E-value=0.099 Score=37.85 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=17.4
Q ss_pred HHcCCcEEEeccCCCchHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~ 124 (202)
...+.++++.|++|+|||...
T Consensus 24 ~~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp HTCSSCEEEEEETTCCHHHHH
T ss_pred hCCCCcEEEECCCCccHHHHH
Confidence 345678999999999999764
No 100
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.52 E-value=0.098 Score=45.73 Aligned_cols=45 Identities=24% Similarity=0.356 Sum_probs=34.4
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
-.++.|+.|+|||....--+ .. + ..+|++||++++..+.+.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~----~~-~---~~lVlTpT~~aa~~l~~kl~~~ 207 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV----NF-E---EDLILVPGRQAAEMIRRRANAS 207 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC----CT-T---TCEEEESCHHHHHHHHHHHTTT
T ss_pred EEEEEcCCCCCHHHHHHHHh----cc-C---CeEEEeCCHHHHHHHHHHhhhc
Confidence 46899999999998764332 11 2 4699999999999998887543
No 101
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=92.38 E-value=0.12 Score=37.45 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=17.6
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
..+.++++.|++|+|||...-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 456789999999999997753
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=92.17 E-value=0.2 Score=38.03 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=28.4
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr 148 (202)
|+-.++.|+.|+|||...+--+......+. +++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~---~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKLGKK---KVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHTTC---EEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeecc
Confidence 556789999999999887666555554444 678877763
No 103
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.30 E-value=0.22 Score=38.67 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=32.4
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHh-cCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~-~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
|.-+++.|++|+|||...+--+.+.... +. .+++++-+ +-..++.+++..+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~---~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGE---PGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCC---CEEEEESS-SCHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCC---Cceeeccc-CCHHHHHHHHHHc
Confidence 4678999999999997766555554433 33 46666544 3345555555544
No 104
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=90.98 E-value=0.18 Score=39.86 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=29.2
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr 148 (202)
.|.-+++.|++|+|||...+-.+......+. +++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~---kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADV---KYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCC---EEEEEEecc
Confidence 3556888999999999887766666555554 677776554
No 105
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=90.95 E-value=0.23 Score=38.20 Aligned_cols=40 Identities=15% Similarity=0.064 Sum_probs=29.2
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTR 148 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr 148 (202)
.|+-.++.|+.|+|||...+-.+......+. +++++-|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~---kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQ---KIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEecc
Confidence 3556788999999999887766666555555 788887764
No 106
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.58 E-value=0.34 Score=41.53 Aligned_cols=44 Identities=23% Similarity=0.346 Sum_probs=30.9
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGM 152 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~ 152 (202)
...++++.|+||+|||...-.-+.+.+..+. .++|+=|..|+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~---~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGD---RMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTC---EEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCC---cEEEEeCCCchhH
Confidence 4578999999999999875223333344343 6788888888764
No 107
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.45 E-value=0.45 Score=35.91 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=18.5
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~ 133 (202)
+.+++.|++|+|||.... .+...+.
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 679999999999997643 3444443
No 108
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.14 E-value=0.57 Score=38.50 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=16.9
Q ss_pred CCcEEEeccCCCchHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
+..+++.|++|+|||.....
T Consensus 152 ~~~lll~G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 57899999999999976543
No 109
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=90.00 E-value=0.85 Score=37.50 Aligned_cols=51 Identities=12% Similarity=-0.067 Sum_probs=32.8
Q ss_pred HcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVAR 159 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~ 159 (202)
..|.-+++.|++|+|||...+--..+....+. .+++++-+ +-..|+..++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~---~vl~~slE-~s~~~l~~R~~ 116 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDD---VVNLHSLE-MGKKENIKRLI 116 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTC---EEEEEESS-SCHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEECC-CCHHHHHHHHH
Confidence 34567999999999999765554444444333 68888755 33445554444
No 110
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=89.98 E-value=0.42 Score=46.42 Aligned_cols=51 Identities=18% Similarity=0.190 Sum_probs=38.0
Q ss_pred EEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
+|.|..|||||.+.+--+...+..+..+.++|+|||+. .+.++.+++....
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q-~TFt~~~rl~~~l 55 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQ-MTFLMEYELAKTP 55 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGG-GHHHHHHHHTCCS
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccHHHHHHHHHhh
Confidence 68899999999998888887777655556899999975 5555555554433
No 111
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.95 E-value=0.74 Score=35.06 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=30.1
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
.|.-+++.|++|+|||.....-+......+. .++++.... ...++.+++..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~---~v~~~~~~~-~~~~~~~~~~~~ 73 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGD---PCIYVTTEE-SRDSIIRQAKQF 73 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTC---CEEEEESSS-CHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC---eEEEEEccc-CHHHHHHHHHHh
Confidence 4567899999999999765443333333333 466654322 234445555444
No 112
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.71 E-value=0.48 Score=39.12 Aligned_cols=55 Identities=18% Similarity=0.134 Sum_probs=33.0
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHh---cCCccEEEEecCCHHh-HHHHHHHHHHh
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNA---QRSAVQAVIVVPTREL-GMQVTKVARVL 161 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~---~~~~~~~Lil~Ptr~L-a~Q~~~~~~~l 161 (202)
|.-+++.|++|+|||...+..+...... +..+..++++.-+..+ ..++.++++.+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4678999999999997766554443222 1112368888765432 34444444444
No 113
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=88.67 E-value=0.57 Score=35.81 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=16.7
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..+++.|++|+|||...-
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999997653
No 114
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.27 E-value=0.49 Score=36.74 Aligned_cols=35 Identities=20% Similarity=0.065 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHHH
Q 028887 91 VLPTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 91 ~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l 125 (202)
..-+--|..++..+..|.-+.+.||+|+|||...-
T Consensus 6 ~pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 6 RPKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp CCCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHHH
T ss_pred ccCCHhHHHHHHhccCCCEEEEECCCCCCHHHHHH
Confidence 33455677788888889999999999999997753
No 115
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.34 E-value=0.3 Score=35.74 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.7
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|++|+|||...-
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3679999999999997643
No 116
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=87.00 E-value=0.81 Score=40.30 Aligned_cols=52 Identities=10% Similarity=0.142 Sum_probs=39.8
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhc
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~ 163 (202)
.|....+.|.|||||+++..-.+ +. .++ ..||++|+...|.|+++.++.+.+
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~-~~--~~~---p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIA-ER--HAG---PVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHH-HH--SSS---CEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHHHHHHH-HH--hCC---CEEEEeCCHHHHHHHHHHHHhhCC
Confidence 45678899999999997643322 11 122 489999999999999999999865
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=86.95 E-value=0.29 Score=36.61 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=17.2
Q ss_pred cCCcEEEeccCCCchHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|+-+++.||+|+|||...-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 567789999999999976543
No 118
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.92 E-value=1.6 Score=34.82 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=16.6
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..+++.|++|+|||...-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999997653
No 119
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.81 E-value=1 Score=36.74 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.||+|+|||...-
T Consensus 37 ~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3679999999999996643
No 120
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.80 E-value=0.37 Score=39.55 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=19.4
Q ss_pred HHhHHcCCcEEEeccCCCchHHHH
Q 028887 101 LPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~i~~g~~~l~~a~TGsGKT~~~ 124 (202)
...+..+.++++.|++|+|||...
T Consensus 40 ~~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 40 LIGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHHcCCeEEEECCCCCcHHHHH
Confidence 334566889999999999999764
No 121
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=86.72 E-value=0.56 Score=37.11 Aligned_cols=19 Identities=21% Similarity=0.436 Sum_probs=16.4
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.|++|+|||...
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999764
No 122
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=86.27 E-value=0.36 Score=36.81 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.2
Q ss_pred cCCcEEEeccCCCchHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|+-+.+.||+|+|||...-+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 577899999999999977543
No 123
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.94 E-value=2.6 Score=31.26 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=14.6
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
..+++.|++|+|||...
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 35999999999999764
No 124
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.86 E-value=0.31 Score=35.68 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|++|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 125
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.86 E-value=0.82 Score=33.32 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=17.5
Q ss_pred cCCcEEEeccCCCchHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|..+++.|++|+|||...-.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 678899999999999976443
No 126
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=85.75 E-value=0.49 Score=41.84 Aligned_cols=30 Identities=23% Similarity=0.234 Sum_probs=23.0
Q ss_pred HHHHHHHHhHHcCCcEEEeccCCCchHHHH
Q 028887 95 DIQREALPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 95 ~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~ 124 (202)
..=..++-.+..|.++++.||+|+|||...
T Consensus 29 ~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 29 HAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 333445555678899999999999999764
No 127
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.67 E-value=0.93 Score=37.13 Aligned_cols=54 Identities=19% Similarity=0.140 Sum_probs=33.0
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHHhc---------CCc----cEEEEecCCHHh-HHHHHHHHHHh
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQ---------RSA----VQAVIVVPTREL-GMQVTKVARVL 161 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~~~---------~~~----~~~Lil~Ptr~L-a~Q~~~~~~~l 161 (202)
.-+++.|++|+|||...+-.+.+..... ..+ ..++|+.-+..+ ..++.++++.+
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 5689999999999987665544422111 111 478888766543 45555555544
No 128
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.64 E-value=0.37 Score=38.93 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.||+|+|||...-
T Consensus 67 ~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3469999999999997753
No 129
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=85.44 E-value=1.1 Score=34.52 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=19.0
Q ss_pred HcCCcEEEeccCCCchHHHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~~~ 128 (202)
..|.-+.+.||+|+|||.....-+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 456789999999999998765444
No 130
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=85.42 E-value=0.71 Score=35.75 Aligned_cols=39 Identities=13% Similarity=0.096 Sum_probs=31.4
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCC
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Pt 147 (202)
.|+=.++.|+.|+|||.-.+-.+-.....+. +++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~---kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcCC---eEEEEccc
Confidence 4566899999999999887777766666655 78999887
No 131
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.31 E-value=0.85 Score=38.01 Aligned_cols=19 Identities=42% Similarity=0.534 Sum_probs=16.4
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.||+|+|||...
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3468999999999999875
No 132
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=84.98 E-value=0.42 Score=38.97 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=16.3
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.++.++++||+|+|||...
T Consensus 48 ~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCSEEEEECSSSSSHHHHH
T ss_pred CCceEEEECCCCcCHHHHH
Confidence 3567999999999999765
No 133
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=84.95 E-value=1.1 Score=35.18 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=29.9
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
|+-.++.|+-|+|||...+--+......+. +++++-|.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~---kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQ---HAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTC---CEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCC---EEEEEEeccC
Confidence 444667888899999888877777766666 7899888765
No 134
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.90 E-value=1.3 Score=37.38 Aligned_cols=43 Identities=23% Similarity=0.417 Sum_probs=29.4
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELG 151 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La 151 (202)
.+.++++.|+||+|||...-.-+.+....+ .+++++=|..+..
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~---~~~~~~D~~~~~~ 76 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG---SRVIIIDPEREYK 76 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTT---CCEEEEESSCCSH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCC---CEEEEEeCCcCHH
Confidence 456899999999999976544444433333 3677777876643
No 135
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.87 E-value=0.47 Score=36.38 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.8
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|+-+++.||+|+|||...-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 46778999999999998754
No 136
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.72 E-value=0.92 Score=38.23 Aligned_cols=37 Identities=19% Similarity=0.166 Sum_probs=26.6
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecC
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~P 146 (202)
|+-+++.|++|+|||...+..+.+....+. .++++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~---~vlyid~ 99 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDA 99 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEES
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEEeC
Confidence 467899999999999887666555554443 5666654
No 137
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.70 E-value=0.49 Score=35.88 Aligned_cols=22 Identities=23% Similarity=0.096 Sum_probs=17.6
Q ss_pred HcCCcEEEeccCCCchHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
..++.+++.|++|||||...-.
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHH
Confidence 3567899999999999987543
No 138
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=84.67 E-value=0.44 Score=38.30 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.2
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
++.+++.||+|+|||...-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5689999999999997653
No 139
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=84.66 E-value=0.44 Score=37.99 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.6
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.++.++++||+|+|||...-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 45679999999999997653
No 140
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=84.66 E-value=0.46 Score=37.23 Aligned_cols=18 Identities=33% Similarity=0.529 Sum_probs=15.4
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++||+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 141
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=84.65 E-value=0.7 Score=39.13 Aligned_cols=22 Identities=32% Similarity=0.400 Sum_probs=17.6
Q ss_pred hHHcCCc--EEEeccCCCchHHHH
Q 028887 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||..-
T Consensus 99 ~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 99 QALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHhCCCCEEEEEeCCCCCCccEEe
Confidence 3567865 788999999999764
No 142
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.62 E-value=0.53 Score=41.73 Aligned_cols=38 Identities=26% Similarity=0.154 Sum_probs=24.6
Q ss_pred HHHCCCCCCcHHHHHHHH-hHHcCCcEEEeccCCCchHHHH
Q 028887 85 MEETGYVLPTDIQREALP-VLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 85 l~~~g~~~~t~~Q~~~i~-~i~~g~~~l~~a~TGsGKT~~~ 124 (202)
+.+.|. +++.+..-+. .+..|..+++.|+||||||...
T Consensus 239 l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 239 LIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred HHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 334452 3444333343 3467888999999999999653
No 143
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.61 E-value=0.56 Score=39.51 Aligned_cols=21 Identities=33% Similarity=0.400 Sum_probs=18.2
Q ss_pred HHcCCcEEEeccCCCchHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~ 124 (202)
+..|..+++.|+||+|||...
T Consensus 172 i~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHH
T ss_pred HhcCCEEEEECCCCCCHHHHH
Confidence 467899999999999999754
No 144
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=84.59 E-value=1.3 Score=33.56 Aligned_cols=35 Identities=17% Similarity=0.008 Sum_probs=23.9
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecC
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~P 146 (202)
.|.-+++.|++|+|||.....-+. ..+. .++++.-
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~---~~~~---~v~~i~~ 53 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL---LSGK---KVAYVDT 53 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH---HHCS---EEEEEES
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH---HcCC---cEEEEEC
Confidence 356789999999999977654443 3333 5666653
No 145
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=84.57 E-value=0.36 Score=40.22 Aligned_cols=26 Identities=8% Similarity=-0.091 Sum_probs=18.9
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~ 133 (202)
+.++++.||+|+|||.+.-. ++..+.
T Consensus 45 ~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 46799999999999976543 334443
No 146
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=84.51 E-value=1.1 Score=37.60 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=28.2
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHh--cCCccEEEEecCCHHhH
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNA--QRSAVQAVIVVPTRELG 151 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~--~~~~~~~Lil~Ptr~La 151 (202)
-+++.|++|+|||...+-.+.+.... +. .++++..+..+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~---~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDA---VCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTC---EEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCc---eEEEEeccchhh
Confidence 47899999999998877666655544 33 677776655543
No 147
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.47 E-value=1.7 Score=34.62 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=33.4
Q ss_pred HHcCCcEEEeccCCCchHHHHHHHHHHHHHhcC--------CccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 104 LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQR--------SAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~--------~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
+..|.-+++.|++|+|||.....-+. .+..+. ..-.++++.-.-.+ .++..++..++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~-~~~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~~~g 91 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA-QIAGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLHALG 91 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH-HHHTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH-HHhcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHHHHH
Confidence 45678899999999999987655443 333330 01246666544332 44444555444
No 148
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=84.25 E-value=1.3 Score=34.25 Aligned_cols=34 Identities=21% Similarity=0.164 Sum_probs=29.4
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEe
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil 144 (202)
-.+++.+.+|.|||.+.+-..+..+..+. +++|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~---rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGK---NVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 46999999999999999999988888776 67776
No 149
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=84.24 E-value=0.41 Score=35.52 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=17.9
Q ss_pred HcCCcEEEeccCCCchHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
..++.+++.|++|+|||...-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHH
Confidence 4567899999999999987543
No 150
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.18 E-value=1 Score=38.11 Aligned_cols=38 Identities=24% Similarity=0.135 Sum_probs=24.1
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCC
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Pt 147 (202)
|.-+++.|++|+|||...+..+......+. .++++...
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg---~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGG---VAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCC---eEEEEecc
Confidence 456899999999999765544433333333 45665544
No 151
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.13 E-value=2.4 Score=36.68 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=28.4
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCC
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Pt 147 (202)
.|.-+++.|++|+|||...+--+.+....+. .+++++-+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~---~vl~fSlE 234 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDD---VVNLHSLE 234 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTC---EEEEECSS
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCC---EEEEEECC
Confidence 3466899999999999776665555555443 78888755
No 152
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.12 E-value=1.6 Score=37.64 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHhHH--cCCcEEEeccCCCchHHHHHHHHHHHH
Q 028887 95 DIQREALPVLF--SSRDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 95 ~~Q~~~i~~i~--~g~~~l~~a~TGsGKT~~~l~~~l~~l 132 (202)
+.+...+..++ .|.-+++.||||||||... -.++..+
T Consensus 153 ~~~~~~L~~l~~~~ggii~I~GpnGSGKTTlL-~allg~l 191 (418)
T 1p9r_A 153 AHNHDNFRRLIKRPHGIILVTGPTGSGKSTTL-YAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHHTSSSEEEEEECSTTSCHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH-HHHHhhc
Confidence 34444554444 3456899999999999653 3344444
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=84.02 E-value=0.49 Score=35.63 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=16.8
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+.+.||+|+|||...-
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 57778999999999998643
No 154
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.86 E-value=0.46 Score=41.30 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=28.1
Q ss_pred HHhCCCCHHHHHHHHHCC---CCCCcHHHHHHHHhHHcCCcEEEeccCCCchHHHH
Q 028887 72 LCQGHVPEHVLRRMEETG---YVLPTDIQREALPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 72 l~~~gl~~~l~~~l~~~g---~~~~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~ 124 (202)
|...|-.+...+.+.+.= +.+|...+...+ ...+.++++||+|+|||+..
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~---~~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGI---RAPKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCC---CCCCEEEEESCTTSSHHHHH
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeeEEECcCCCCHHHHH
Confidence 344466666666665421 112222221111 12367999999999999764
No 155
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.86 E-value=1.2 Score=37.29 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=25.4
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
|.-+++.|++|+|||...+..+......+. .++++.
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~---~vlyi~ 96 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGG---IAAFID 96 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCC---eEEEEE
Confidence 467999999999999877666555554433 455554
No 156
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=83.86 E-value=0.84 Score=38.09 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=17.8
Q ss_pred hHHcCCc--EEEeccCCCchHHHH
Q 028887 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||..-
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 72 DVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhCCCeEEEEEECCCCCCCceEe
Confidence 3467865 788999999999875
No 157
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=83.84 E-value=2 Score=35.05 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.5
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..+++.|++|+|||...-
T Consensus 56 ~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 579999999999997653
No 158
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=83.57 E-value=0.5 Score=39.13 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
++.+++.||+|+|||...-
T Consensus 70 ~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp TCEEEEEESTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 159
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=83.42 E-value=0.67 Score=33.88 Aligned_cols=19 Identities=26% Similarity=0.386 Sum_probs=16.0
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.|++|||||...
T Consensus 3 ~~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3567999999999999764
No 160
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=83.34 E-value=0.54 Score=35.37 Aligned_cols=21 Identities=19% Similarity=0.115 Sum_probs=17.2
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
..|.-+.+.|++|||||...-
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~ 24 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRK 24 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 357788999999999997653
No 161
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.34 E-value=0.55 Score=40.47 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++||+|+|||+..
T Consensus 182 prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCEEEESCSSSSHHHHH
T ss_pred CCceEEeCCCCCCHHHHH
Confidence 367999999999999774
No 162
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=83.33 E-value=0.51 Score=35.91 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=17.6
Q ss_pred HHcCCcEEEeccCCCchHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~ 124 (202)
+..|+-+++.|++|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 346788999999999999764
No 163
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=83.01 E-value=0.63 Score=35.58 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=14.7
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+-+++.||+|+|||...
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 56899999999999764
No 164
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=82.96 E-value=0.44 Score=38.30 Aligned_cols=21 Identities=29% Similarity=0.243 Sum_probs=17.4
Q ss_pred HHcCCcEEEeccCCCchHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~ 124 (202)
+..|.-+.+.||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999764
No 165
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=82.83 E-value=0.59 Score=38.39 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=15.1
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 56999999999999765
No 166
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=82.83 E-value=0.89 Score=37.18 Aligned_cols=19 Identities=32% Similarity=0.636 Sum_probs=16.3
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.|++|+|||.+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4578999999999999764
No 167
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=82.80 E-value=0.85 Score=38.39 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=17.0
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 90 ~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 90 LLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp HHHTCCEEEEEESSTTSSHHHHH
T ss_pred hhCCCceEEEEecCCCCCCCeEE
Confidence 467765 688999999999874
No 168
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=82.79 E-value=0.64 Score=34.17 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.9
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
++-+++.|++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998753
No 169
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=82.78 E-value=0.98 Score=37.97 Aligned_cols=21 Identities=43% Similarity=0.561 Sum_probs=17.1
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|+||||||..-
T Consensus 79 ~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 79 FFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHhhcCeeEEEecccCCCceEee
Confidence 467765 788999999999874
No 170
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=82.71 E-value=0.58 Score=36.83 Aligned_cols=17 Identities=29% Similarity=0.544 Sum_probs=14.9
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+++.|++|+|||...
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 56999999999999764
No 171
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=82.63 E-value=0.99 Score=38.30 Aligned_cols=21 Identities=33% Similarity=0.370 Sum_probs=17.3
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 80 ~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 80 VLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCceEEEeecCCCCCCceEE
Confidence 467765 788999999999885
No 172
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=82.59 E-value=1 Score=38.05 Aligned_cols=21 Identities=33% Similarity=0.433 Sum_probs=17.2
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 85 ~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 85 VLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCceeEEeecCCCCCCCEEe
Confidence 467765 788999999999875
No 173
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=82.55 E-value=0.72 Score=34.57 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=14.7
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|+-+.+.||+|+|||...
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345789999999999764
No 174
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=82.53 E-value=0.73 Score=35.69 Aligned_cols=22 Identities=14% Similarity=0.155 Sum_probs=17.2
Q ss_pred HHcCCcEEEeccCCCchHHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~l 125 (202)
+..|+-+.+.||+|+|||...-
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~ 41 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIK 41 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHH
Confidence 3568889999999999997643
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=82.47 E-value=4.3 Score=33.91 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=31.8
Q ss_pred HcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~ 158 (202)
..|.-+++.|++|+|||...+--+......+. .++|++.+-. ..|+..++
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~---~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDR---GVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC---EEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC---eEEEEeCCCC-HHHHHHHH
Confidence 34566899999999999776555544444333 6788775422 34444444
No 176
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=82.44 E-value=0.67 Score=34.36 Aligned_cols=20 Identities=25% Similarity=0.142 Sum_probs=16.6
Q ss_pred CCcEEEeccCCCchHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
++.+++.|++|||||.+.-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56789999999999987543
No 177
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=82.36 E-value=1 Score=37.60 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHhHHcCCc--EEEeccCCCchHHHH
Q 028887 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||...
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 3445678866 788999999999775
No 178
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=82.30 E-value=1 Score=38.39 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=17.1
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 97 ~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 97 VLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHH
T ss_pred HhCCCeeeEEeecCCCCCCCEeE
Confidence 467865 788999999999774
No 179
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=82.30 E-value=1 Score=38.07 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=18.3
Q ss_pred HhHHcCCc--EEEeccCCCchHHHH
Q 028887 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||...
T Consensus 86 ~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 86 QNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHhCCceeEEEeeCCCCCCCceEE
Confidence 34567866 688999999999875
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=82.23 E-value=0.58 Score=37.22 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=15.4
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..++++||+|+|||...-
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 469999999999998753
No 181
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.19 E-value=0.7 Score=38.44 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.4
Q ss_pred HHcCCcEEEeccCCCchHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLT 123 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~ 123 (202)
+..|..+.+.|+||||||..
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 45788999999999999974
No 182
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=82.17 E-value=0.56 Score=34.95 Aligned_cols=21 Identities=24% Similarity=0.309 Sum_probs=17.2
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
..|.-+++.|++|+|||...-
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 456779999999999997643
No 183
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.17 E-value=0.59 Score=40.66 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++||+|+|||+..
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 367999999999999875
No 184
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=82.04 E-value=0.64 Score=38.34 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.5
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
+.++++||+|+|||...-
T Consensus 46 ~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp SEEEEESSSSSCHHHHHH
T ss_pred ceEEEECCCCccHHHHHH
Confidence 679999999999997653
No 185
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=82.01 E-value=1 Score=38.12 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=17.2
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 76 ~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 76 ILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HTTTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCCcceEEEECCCCCCcceEe
Confidence 467765 788999999999875
No 186
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=81.99 E-value=1 Score=38.05 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=18.0
Q ss_pred HhHHcCCc--EEEeccCCCchHHHH
Q 028887 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||...
T Consensus 97 ~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 97 SQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp HHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHhCCCceEEEEECCCCCCCceEe
Confidence 34467866 688899999999875
No 187
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=81.93 E-value=1.1 Score=37.87 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=17.7
Q ss_pred hHHcCCc--EEEeccCCCchHHHH
Q 028887 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 72 ~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 72 SAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHcCCccceeeecCCCCCCCeEE
Confidence 3467765 788999999999876
No 188
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.93 E-value=0.61 Score=40.44 Aligned_cols=18 Identities=33% Similarity=0.575 Sum_probs=15.6
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++||+|+|||+..
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 367999999999999775
No 189
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=81.89 E-value=1.1 Score=38.03 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=17.5
Q ss_pred hHHcCCc--EEEeccCCCchHHHH
Q 028887 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||...
T Consensus 84 ~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 84 HAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp HHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCeeEEEEeCCCCCCCceEe
Confidence 3467765 788999999999765
No 190
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=81.78 E-value=1 Score=38.03 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=17.2
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 101 ~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 101 FLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HTTTCCEEEEEECCTTSSHHHHH
T ss_pred HhCCCceEEEEeCCCCCCceeee
Confidence 467765 788999999999875
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=81.74 E-value=0.68 Score=35.79 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=17.7
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
..|+-+++.||+|+|||...-
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHHH
Confidence 467889999999999998654
No 192
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.69 E-value=0.7 Score=33.36 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-+++.|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 193
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=81.66 E-value=3.6 Score=33.30 Aligned_cols=43 Identities=16% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHHHCCCCCCcHHHHHH-HHhHHcCC-----cEEEeccCCCchHHHHH
Q 028887 80 HVLRRMEETGYVLPTDIQREA-LPVLFSSR-----DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 80 ~l~~~l~~~g~~~~t~~Q~~~-i~~i~~g~-----~~l~~a~TGsGKT~~~l 125 (202)
.+.+-|+-.||. +++-.. +...+.|+ .++++||.|+|||..+.
T Consensus 74 ~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 74 RIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp HHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 566667777764 444332 34455553 49999999999998876
No 194
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=81.63 E-value=0.63 Score=37.81 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.6
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999764
No 195
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=81.61 E-value=0.62 Score=34.54 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=16.9
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+.+.|++|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678899999999998765
No 196
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=81.60 E-value=1.3 Score=33.38 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=14.1
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.|++|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999764
No 197
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=81.56 E-value=0.76 Score=35.88 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=17.8
Q ss_pred HHcCCcEEEeccCCCchHHHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
+-.|.-+++.||+|+|||...-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 45688899999999999986543
No 198
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=81.47 E-value=1 Score=38.08 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=17.4
Q ss_pred hHHcCCc--EEEeccCCCchHHHH
Q 028887 103 VLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 103 ~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.++.|.+ ++.+|.||||||..-
T Consensus 83 ~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 83 EVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp HHHTTCEEEEEEEECTTSSHHHHH
T ss_pred HHhCCCceEEEEeCCCCCCCceEE
Confidence 3467765 788999999999764
No 199
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=81.46 E-value=2.5 Score=41.18 Aligned_cols=56 Identities=20% Similarity=0.241 Sum_probs=43.2
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhc---------CCccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQ---------RSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~---------~~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
.|.. +|.|.-|||||.+-..-++..+... -..-+.|+++=|+.=|..+.+++++..
T Consensus 16 ~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 16 QGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3444 9999999999999888888887532 123479999999998888888876543
No 200
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=81.44 E-value=0.78 Score=35.00 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=17.5
Q ss_pred hHHcCCcEEEeccCCCchHHHHH
Q 028887 103 VLFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 103 ~i~~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..|.-+.+.||+|+|||...-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 56778889999999999997653
No 201
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.39 E-value=1 Score=38.73 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=19.5
Q ss_pred HHHhHHcCCc--EEEeccCCCchHHHH
Q 028887 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||..-
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 3445578876 688999999999875
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=81.13 E-value=1.5 Score=36.40 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=31.8
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhc---CCccEEEEecCCHHh-HHHHHHHHHHh
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQ---RSAVQAVIVVPTREL-GMQVTKVARVL 161 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~---~~~~~~Lil~Ptr~L-a~Q~~~~~~~l 161 (202)
|.-+++.|++|+|||...+..+....... ..+-.++++.-+..+ ..++.+++..+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 35689999999999987655444322210 123367888765432 33444444443
No 203
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.10 E-value=4.5 Score=41.69 Aligned_cols=47 Identities=19% Similarity=0.217 Sum_probs=35.2
Q ss_pred HHhHHc------CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHh
Q 028887 101 LPVLFS------SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTREL 150 (202)
Q Consensus 101 i~~i~~------g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~L 150 (202)
+..++. |+.++++||+|+|||...+..+.+....+. +++++...-.+
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~---~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHAL 1467 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEECTTSCC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCC---cEEEEEccccc
Confidence 556666 588999999999999988777666665554 68887766433
No 204
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=81.05 E-value=1 Score=37.90 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHhHHcCCc--EEEeccCCCchHHHH
Q 028887 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||..-
T Consensus 77 lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 77 LVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 4455677866 688999999999875
No 205
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=81.00 E-value=1.1 Score=38.70 Aligned_cols=21 Identities=48% Similarity=0.733 Sum_probs=17.1
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 150 ~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 150 IFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHTTCEEEEEEEESTTSSHHHHH
T ss_pred HhcCCceeEEeecCCCCCCCeEe
Confidence 467765 788999999999875
No 206
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.99 E-value=1.9 Score=36.45 Aligned_cols=37 Identities=16% Similarity=0.132 Sum_probs=24.7
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecC
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~P 146 (202)
|.-+++.|++|+|||...+-.+.+....+. .++++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~---~vlyi~~ 110 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGG---TCAFIDA 110 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEES
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCC---eEEEEEC
Confidence 466899999999999766555544444333 4555543
No 207
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=80.94 E-value=1.1 Score=38.73 Aligned_cols=25 Identities=32% Similarity=0.376 Sum_probs=19.4
Q ss_pred HHHhHHcCCc--EEEeccCCCchHHHH
Q 028887 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||...
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 3445678866 788899999999875
No 208
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=80.71 E-value=1.1 Score=38.10 Aligned_cols=21 Identities=33% Similarity=0.471 Sum_probs=17.0
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 96 ~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 96 VLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHH
T ss_pred HhCCceEEEEeecCCCCCcceec
Confidence 467765 788999999999774
No 209
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=80.69 E-value=1 Score=38.34 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=18.7
Q ss_pred HHhHHcCCc--EEEeccCCCchHHHH
Q 028887 101 LPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
+..++.|.+ ++.+|.||||||..-
T Consensus 72 v~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 72 VQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hHhhhcCCceEEEEECCCCCCCeEee
Confidence 344577865 678999999999875
No 210
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=80.66 E-value=0.79 Score=33.88 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=15.5
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+++.|++|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999764
No 211
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=80.58 E-value=5.4 Score=42.28 Aligned_cols=46 Identities=17% Similarity=0.231 Sum_probs=29.3
Q ss_pred HHHHHHHHCCCCCCcHHHH-HHH---HhHHcCCcEEEeccCCCchHHHHHH
Q 028887 80 HVLRRMEETGYVLPTDIQR-EAL---PVLFSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 80 ~l~~~l~~~g~~~~t~~Q~-~~i---~~i~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.+.+.+.+.|+. +++.+. .++ ..+.....+++.||||+|||.++-.
T Consensus 893 ~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 893 CLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 344555566764 455442 222 2334567799999999999998644
No 212
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=80.40 E-value=0.87 Score=38.08 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=15.1
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||...
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 56999999999999875
No 213
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.38 E-value=0.9 Score=37.99 Aligned_cols=19 Identities=42% Similarity=0.511 Sum_probs=16.1
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
...+++.|++|+|||...-
T Consensus 72 ~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 214
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=80.34 E-value=1.2 Score=38.06 Aligned_cols=21 Identities=48% Similarity=0.733 Sum_probs=17.2
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||..-
T Consensus 130 ~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 130 IFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHTTCEEEEEEESCTTSSHHHHH
T ss_pred HhcCCceEEEEecCCCCCCCeEe
Confidence 467765 788999999999875
No 215
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.28 E-value=2.2 Score=32.69 Aligned_cols=24 Identities=17% Similarity=0.108 Sum_probs=18.9
Q ss_pred cCCcEEEeccCCCchHHHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIF 129 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l 129 (202)
.|.-+.+.|++|+|||.....-+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457789999999999987655443
No 216
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=80.23 E-value=1.4 Score=37.15 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=19.2
Q ss_pred HHHhHHcCCc--EEEeccCCCchHHHH
Q 028887 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++.+|.||||||..-
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 3445577866 788999999999865
No 217
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=80.23 E-value=0.79 Score=39.68 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.2
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
++.++++||+|+|||....
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 3679999999999997754
No 218
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.00 E-value=1 Score=35.19 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=17.0
Q ss_pred cCCcEEEeccCCCchHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~ 127 (202)
.|+-+++.|+||+|||...+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALEL 54 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4566899999999998665443
No 219
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=79.98 E-value=0.87 Score=37.51 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~G~GKT~l~~ 62 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVAR 62 (387)
T ss_dssp CCCEEECBCTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999997643
No 220
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.95 E-value=3.9 Score=35.16 Aligned_cols=50 Identities=20% Similarity=0.068 Sum_probs=29.9
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~ 158 (202)
.|.-+++.|++|+|||...+--........ +..++++..+-. ..|+..++
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~--g~~vl~~slE~~-~~~l~~R~ 248 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKE--GVGVGIYSLEMP-AAQLTLRM 248 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTT--CCCEEEEESSSC-HHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCeEEEEECCCC-HHHHHHHH
Confidence 345689999999999966555444444321 125777765422 33444443
No 221
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=79.93 E-value=0.78 Score=38.57 Aligned_cols=20 Identities=30% Similarity=0.378 Sum_probs=16.2
Q ss_pred CcEEEeccCCCchHHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~ 127 (202)
+-+++.||||+|||......
T Consensus 41 ~lIvI~GPTgsGKTtLa~~L 60 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDL 60 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 46899999999999776543
No 222
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=79.78 E-value=1.4 Score=38.39 Aligned_cols=21 Identities=38% Similarity=0.442 Sum_probs=17.4
Q ss_pred HHcCCc--EEEeccCCCchHHHH
Q 028887 104 LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
++.|.+ ++.+|.||||||...
T Consensus 132 ~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 132 NFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHTTCCEEEEEESSTTSSHHHHH
T ss_pred hhcCCceEEEEeCCCCCCCCEEe
Confidence 467865 788999999999875
No 223
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=79.73 E-value=0.65 Score=34.40 Aligned_cols=20 Identities=20% Similarity=0.267 Sum_probs=16.4
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|..+++.|+.|||||...-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45678999999999998653
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=79.61 E-value=0.5 Score=37.36 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=15.7
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
.+.+++.||+|+|||...-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3568999999999997753
No 225
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=79.55 E-value=0.86 Score=36.21 Aligned_cols=18 Identities=28% Similarity=0.147 Sum_probs=14.5
Q ss_pred cEEEeccCCCchHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+++.|++|||||...-.
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 368999999999986543
No 226
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=79.40 E-value=1 Score=34.10 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=16.8
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|..+++.|++|+|||...-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46789999999999997753
No 227
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=79.27 E-value=0.94 Score=33.82 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.8
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..+++.|+.|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998753
No 228
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=79.25 E-value=0.82 Score=37.02 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=15.9
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
...+++.|++|+|||...-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 3679999999999997653
No 229
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=79.21 E-value=0.9 Score=38.31 Aligned_cols=19 Identities=32% Similarity=0.501 Sum_probs=16.2
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
++.++++|++|+|||...-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4689999999999997653
No 230
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=79.19 E-value=1.4 Score=36.04 Aligned_cols=17 Identities=29% Similarity=0.426 Sum_probs=14.8
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.++++.||+|+|||...
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999764
No 231
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.00 E-value=0.78 Score=40.27 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=15.7
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++||+|+|||+..
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 467999999999999764
No 232
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=78.96 E-value=1.2 Score=38.15 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=23.1
Q ss_pred CcHHHHHHHHh--------HHcCCc--EEEeccCCCchHHHH
Q 028887 93 PTDIQREALPV--------LFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 93 ~t~~Q~~~i~~--------i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
+..-|.+++.. ++.|.+ ++.+|.||||||...
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 44566666642 467765 788999999999875
No 233
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=78.85 E-value=0.9 Score=37.94 Aligned_cols=20 Identities=30% Similarity=0.341 Sum_probs=15.6
Q ss_pred CcEEEeccCCCchHHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~ 127 (202)
+-+++.||||+|||......
T Consensus 4 ~~i~i~GptgsGKt~la~~L 23 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVML 23 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHHH
Confidence 34788999999999776443
No 234
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=78.84 E-value=2.3 Score=36.64 Aligned_cols=19 Identities=21% Similarity=0.165 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|++|+|||...-
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999997643
No 235
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=78.81 E-value=0.99 Score=37.59 Aligned_cols=19 Identities=37% Similarity=0.342 Sum_probs=15.2
Q ss_pred cEEEeccCCCchHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~ 127 (202)
-+++.||||+|||......
T Consensus 12 ~i~i~GptgsGKt~la~~L 30 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIEL 30 (316)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHH
Confidence 4788999999999776443
No 236
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=78.80 E-value=1.3 Score=37.81 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=18.1
Q ss_pred HhHHcCCc--EEEeccCCCchHHHH
Q 028887 102 PVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 102 ~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
..++.|.+ ++.+|.||||||..-
T Consensus 109 ~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 109 QSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp HGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred HHhcCCCceEEEEeCCCCCCCceEe
Confidence 34567765 788999999999875
No 237
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=78.63 E-value=1 Score=32.94 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-+++.|++|||||...-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 47899999999998653
No 238
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=78.62 E-value=0.96 Score=37.76 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.1
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
.+.+++.|++|+|||...-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4679999999999997753
No 239
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=78.44 E-value=0.96 Score=36.36 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.8
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.||+|+|||...-
T Consensus 49 ~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEESCSSSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 68999999999997753
No 240
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=78.39 E-value=0.91 Score=33.31 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
|..+++.|++|||||...-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5568999999999998653
No 241
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.31 E-value=0.94 Score=39.41 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.7
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++||+|+|||+..
T Consensus 216 prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CSEEEEESSTTTTHHHHH
T ss_pred CCCCceECCCCchHHHHH
Confidence 367999999999999864
No 242
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=78.30 E-value=4.5 Score=41.01 Aligned_cols=50 Identities=22% Similarity=0.182 Sum_probs=39.4
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhc
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAA 163 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~ 163 (202)
+-+.+.||.|||||...+..+.+....+. .++++.+..+|.... +++++=
T Consensus 1432 ~~iei~g~~~sGkttl~~~~~a~~~~~g~---~~~~i~~e~~~~~~~---~~~~Gv 1481 (1706)
T 3cmw_A 1432 RIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAEHALDPIY---ARKLGV 1481 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTTSCCCHHH---HHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCC---eEEEEecCCCCCHHH---HHHcCC
Confidence 66999999999999998888877777666 788888887777664 555543
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.27 E-value=2.6 Score=34.37 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=17.0
Q ss_pred CCcEEEeccCCCchHHHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~ 128 (202)
|+.+.+.|++|+|||.......
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4568899999999998755433
No 244
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=78.23 E-value=1 Score=35.36 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.4
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+++.||+|+|||...
T Consensus 50 ~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 34999999999999764
No 245
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=78.19 E-value=0.71 Score=37.78 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=15.4
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
...+++.|++|+|||...
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 456999999999999764
No 246
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=78.14 E-value=0.99 Score=32.70 Aligned_cols=17 Identities=18% Similarity=-0.066 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||.+.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 247
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=77.96 E-value=4.7 Score=34.75 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=26.4
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHh-cCCccEEEEecCC
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPT 147 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~-~~~~~~~Lil~Pt 147 (202)
.|.-+++.|++|+|||...+--....... +. .++++..+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~---~Vl~~s~E 241 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNE---NVAIFSLE 241 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSC---CEEEEESS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCC---cEEEEECC
Confidence 45678999999999997665554444432 32 57777654
No 248
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=77.74 E-value=3.1 Score=36.84 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=19.2
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l 132 (202)
+.++++.|.||||||.+.-..+...+
T Consensus 167 ~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp SCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999977544444433
No 249
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=77.63 E-value=3.7 Score=32.13 Aligned_cols=23 Identities=9% Similarity=0.213 Sum_probs=17.6
Q ss_pred cEEEeccCCCchHHHHHHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l 132 (202)
.+++.||.|+|||..+ ..++..+
T Consensus 60 ~ili~GPPGtGKTt~a-~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFG-MSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHH-HHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHHh
Confidence 5999999999999765 4455554
No 250
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=76.89 E-value=0.99 Score=38.15 Aligned_cols=20 Identities=30% Similarity=0.287 Sum_probs=16.7
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|..+++.||||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45677999999999999764
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=76.88 E-value=0.96 Score=33.92 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.7
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|..+++.|+.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46779999999999997753
No 252
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.71 E-value=3.2 Score=33.28 Aligned_cols=24 Identities=13% Similarity=0.070 Sum_probs=18.6
Q ss_pred HHcCCcEEEeccCCCchHHHHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~l~~ 127 (202)
+..|.-+++.|++|+|||.....-
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHH
Confidence 345678999999999999765443
No 253
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=76.70 E-value=11 Score=27.41 Aligned_cols=46 Identities=22% Similarity=0.192 Sum_probs=31.8
Q ss_pred ccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH-HHHHHh
Q 028887 138 AVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK-SWLKVL 196 (202)
Q Consensus 138 ~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~l 196 (202)
..++||.+++++.+..+.+.+...+. . +..+||...+.++ +.++.+
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~~------------~-~~~~~g~~~~~~R~~~~~~f 80 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDGH------------Q-VSLLSGELTVEQRASIIQRF 80 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTTC------------C-EEEECSSCCHHHHHHHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEeCCCCHHHHHHHHHHH
Confidence 34899999999999999888876532 2 5667776665553 334443
No 254
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.64 E-value=5.7 Score=32.60 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=14.9
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+++.|++|+|||...
T Consensus 46 ~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CEEEEEECTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 56999999999999765
No 255
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.59 E-value=1.2 Score=32.99 Aligned_cols=20 Identities=20% Similarity=0.165 Sum_probs=16.8
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..+..+++.|+.|||||...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999864
No 256
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=76.31 E-value=1.2 Score=35.83 Aligned_cols=18 Identities=33% Similarity=0.433 Sum_probs=14.8
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
+.+++.||+|+|||...-
T Consensus 45 ~GvlL~Gp~GtGKTtLak 62 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAK 62 (274)
T ss_dssp SEEEEESSTTSCHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 349999999999997643
No 257
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=75.86 E-value=1.2 Score=33.68 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=21.4
Q ss_pred CcHHHHHHHHhHHcCCcEEEeccCCCchHHHHH
Q 028887 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 93 ~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..+...+ ....|.-+.+.|++|+|||...-
T Consensus 12 ~~~~~~~~~-~~~~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 12 VEKVDRQRL-LDQKGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCHHHHHHH-HTSCCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHHHHh-cCCCCeEEEEECCCCCCHHHHHH
Confidence 445554433 12346778999999999997653
No 258
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=75.83 E-value=5.1 Score=29.96 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=21.5
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecC
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~P 146 (202)
-+++.|++|+|||... ..++..+......+..+..-|
T Consensus 8 ~i~i~G~sGsGKTTl~-~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLL-KKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp EEEEECCTTSCHHHHH-HHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEeCCCCCHHHHH-HHHHHhccccCCceeEEeeCC
Confidence 4788999999999653 334444443333333444433
No 259
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=75.71 E-value=0.95 Score=35.05 Aligned_cols=20 Identities=25% Similarity=0.237 Sum_probs=12.9
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp ECCCEEEEECSCC----CHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999774
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=75.70 E-value=3.4 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=20.9
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHhcC
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNAQR 136 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~~~ 136 (202)
.+++.++.|+|||...+--.......+.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 5889999999999887665555555443
No 261
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=75.47 E-value=1.3 Score=38.24 Aligned_cols=18 Identities=28% Similarity=0.457 Sum_probs=15.5
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
+.++++||+|+|||...-
T Consensus 168 ~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 679999999999997653
No 262
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.42 E-value=1.2 Score=37.62 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.5
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.||||||||...
T Consensus 122 ~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp SSEEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4457899999999999664
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=74.95 E-value=1 Score=33.54 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.1
Q ss_pred CcEEEeccCCCchHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~ 126 (202)
.-+++.|++|+|||...-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 3478899999999986543
No 264
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=74.86 E-value=1.4 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.4
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+++.||+|+|||...
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 34999999999999764
No 265
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=74.85 E-value=1.3 Score=32.84 Aligned_cols=19 Identities=21% Similarity=0.181 Sum_probs=15.6
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998643
No 266
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=74.70 E-value=1.8 Score=34.45 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=18.6
Q ss_pred HcCCcEEEeccCCCchHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
+.|..+++.|++|+|||.+.-.
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHH
Confidence 4589999999999999987543
No 267
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=74.39 E-value=1.5 Score=38.62 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=15.7
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+.++++|++|+|||...
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999875
No 268
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=74.34 E-value=1.6 Score=32.52 Aligned_cols=20 Identities=20% Similarity=0.197 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..+.-+++.|+.|||||...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34567999999999999874
No 269
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=74.28 E-value=1.5 Score=36.47 Aligned_cols=18 Identities=28% Similarity=0.244 Sum_probs=15.0
Q ss_pred cEEEeccCCCchHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
.+++.||||+|||.....
T Consensus 7 ~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999976543
No 270
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=74.27 E-value=1.7 Score=35.68 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=16.1
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|++|+|||...-
T Consensus 45 ~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999997653
No 271
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=74.24 E-value=1.4 Score=33.57 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=15.4
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999654
No 272
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=74.18 E-value=2.2 Score=34.18 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.8
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.||+|+|||...-
T Consensus 48 ~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 69999999999997643
No 273
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=73.99 E-value=1.4 Score=32.56 Aligned_cols=19 Identities=16% Similarity=0.163 Sum_probs=15.5
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|++|||||...-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3458899999999998753
No 274
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=73.87 E-value=1.6 Score=32.88 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.3
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
+-+++.|+.|||||...-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 469999999999998753
No 275
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=73.77 E-value=1.6 Score=35.91 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.4
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..+++.||+|+|||...-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 579999999999997753
No 276
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=73.77 E-value=5.6 Score=29.77 Aligned_cols=25 Identities=16% Similarity=-0.080 Sum_probs=17.0
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHh
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNA 134 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~ 134 (202)
-+.+.|++|||||... .-++..+..
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~~ 30 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAVR 30 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhHh
Confidence 3678899999999654 334444544
No 277
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=73.74 E-value=1.2 Score=33.40 Aligned_cols=20 Identities=20% Similarity=0.137 Sum_probs=16.2
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+++.|+.|||||...-
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHH
Confidence 35568999999999997653
No 278
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.64 E-value=1.4 Score=35.70 Aligned_cols=18 Identities=39% Similarity=0.394 Sum_probs=15.0
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
.-+++.|++|||||...-
T Consensus 34 ~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp EEEEEECCTTSCTHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458999999999997653
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=73.54 E-value=6 Score=34.24 Aligned_cols=34 Identities=26% Similarity=0.178 Sum_probs=21.4
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
-+++.|++|+|||.............+. +++++.
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~~G~---kVllv~ 132 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKKRGY---KVGLVA 132 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEe
Confidence 4788899999999876544433323333 455544
No 280
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=73.42 E-value=2.5 Score=32.47 Aligned_cols=22 Identities=32% Similarity=0.640 Sum_probs=16.4
Q ss_pred cEEEeccCCCchHHHHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLLIFS 130 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~ 130 (202)
-.++.|+.|||||...+.-++.
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4789999999999875443333
No 281
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=73.23 E-value=1.7 Score=33.45 Aligned_cols=19 Identities=21% Similarity=0.265 Sum_probs=15.6
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.+..+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3466999999999999875
No 282
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=73.14 E-value=2.7 Score=33.36 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=30.7
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
.|+-.++.|+-|+|||...+--+......+. +++++-|.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~---kvli~kp~~D 58 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQY---KCLVIKYAKD 58 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTC---CEEEEEETTC
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCC---eEEEEeecCC
Confidence 3565778888899999888777776666555 7888877654
No 283
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=73.10 E-value=1.9 Score=32.81 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=22.6
Q ss_pred CcHHHHHHHHhHHcCCcEEEeccCCCchHHHHH
Q 028887 93 PTDIQREALPVLFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 93 ~t~~Q~~~i~~i~~g~~~l~~a~TGsGKT~~~l 125 (202)
.++.++... .+..|..+++.|++|+|||...-
T Consensus 12 ~~~~~r~~~-~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 12 LTRSERTEL-RNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CCHHHHHHH-HTSSCEEEEEECSTTSSHHHHHH
T ss_pred cCHHHhhcc-cCCCCCEEEEECCCCCCHHHHHH
Confidence 455555543 34567789999999999997653
No 284
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=72.92 E-value=1.5 Score=33.16 Aligned_cols=19 Identities=26% Similarity=0.055 Sum_probs=15.3
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3455789999999999764
No 285
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=72.88 E-value=4.3 Score=35.36 Aligned_cols=49 Identities=4% Similarity=-0.052 Sum_probs=30.7
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHh-cCCccEEEEecCCHHhHHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~-~~~~~~~Lil~Ptr~La~Q~~~~~ 158 (202)
.|.-+++.|++|+|||...+--+.+.... +. .+++++-+-. ..|+..++
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~---~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGK---KVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCC---CEEEEESSSC-HHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCC---cEEEEeccCC-HHHHHHHH
Confidence 45668999999999997665555444433 33 5777765422 33444443
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=72.69 E-value=6.1 Score=34.30 Aligned_cols=21 Identities=33% Similarity=0.237 Sum_probs=16.6
Q ss_pred cEEEeccCCCchHHHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLLIF 129 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l 129 (202)
-+++.|++|+|||....-...
T Consensus 102 vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 102 ILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHH
Confidence 478899999999988655443
No 287
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=72.58 E-value=2.7 Score=35.51 Aligned_cols=19 Identities=47% Similarity=0.604 Sum_probs=15.9
Q ss_pred cCCc--EEEeccCCCchHHHH
Q 028887 106 SSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~--~l~~a~TGsGKT~~~ 124 (202)
.|.+ ++.+|.||||||..-
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4765 689999999999775
No 288
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=72.53 E-value=11 Score=27.20 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=31.4
Q ss_pred EEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH-HHHHHh
Q 028887 140 QAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK-SWLKVL 196 (202)
Q Consensus 140 ~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~l 196 (202)
++||.+++++.+..+.+.++..+-. +..+||...+.++ +.++.+
T Consensus 37 ~~lVF~~~~~~~~~l~~~L~~~~~~-------------~~~~hg~~~~~~r~~~~~~f 81 (163)
T 2hjv_A 37 SCIIFCRTKEHVNQLTDELDDLGYP-------------CDKIHGGMIQEDRFDVMNEF 81 (163)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTCC-------------EEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCc-------------EEEEeCCCCHHHHHHHHHHH
Confidence 6999999999999999988876322 5677776655543 344443
No 289
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=72.53 E-value=5.1 Score=36.04 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=19.7
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~ 133 (202)
.++++.|.||||||.+.-..+...+.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999776555555443
No 290
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=72.52 E-value=1.8 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.8
Q ss_pred cEEEeccCCCchHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+++.||||||||.....
T Consensus 9 lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHH
Confidence 478999999999976543
No 291
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=72.48 E-value=1.7 Score=31.95 Aligned_cols=16 Identities=25% Similarity=0.175 Sum_probs=13.8
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999764
No 292
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=72.46 E-value=4 Score=33.49 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=14.9
Q ss_pred CcEEEeccCCCchHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~ 126 (202)
+-+++.|++|+|||.....
T Consensus 105 ~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHH
Confidence 3478899999999976543
No 293
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=72.34 E-value=1.7 Score=36.56 Aligned_cols=16 Identities=19% Similarity=0.470 Sum_probs=14.0
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|+||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4679999999999776
No 294
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.31 E-value=4.6 Score=29.77 Aligned_cols=21 Identities=29% Similarity=0.154 Sum_probs=16.7
Q ss_pred cCCcEEEeccCCCchHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|..+++.|..|+|||...-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356689999999999986543
No 295
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=72.18 E-value=1.9 Score=31.31 Aligned_cols=16 Identities=31% Similarity=0.381 Sum_probs=13.5
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3688999999999873
No 296
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=72.16 E-value=2 Score=33.79 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.4
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677899999999999653
No 297
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.04 E-value=1.7 Score=32.00 Aligned_cols=19 Identities=26% Similarity=0.302 Sum_probs=15.8
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..+++.|+.|||||.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999764
No 298
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=72.01 E-value=4 Score=32.05 Aligned_cols=41 Identities=17% Similarity=0.137 Sum_probs=28.1
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
.|.-.++.|+-|+|||...+-.+......+. +++++-|.++
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~---kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQ---KVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTC---CEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---ceEEEEeccC
Confidence 4556788899999999877666555444444 6888888654
No 299
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=71.82 E-value=3.8 Score=33.54 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=14.1
Q ss_pred EEEeccCCCchHHHHH
Q 028887 110 CILHAQTGSGKTLTYL 125 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l 125 (202)
+++.||+|+|||....
T Consensus 49 ~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIV 64 (340)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 8999999999997654
No 300
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.81 E-value=2.1 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=17.3
Q ss_pred cCCcEEEeccCCCchHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~ 127 (202)
.|.-+.+.||+|+|||.....-
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999765443
No 301
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=71.77 E-value=1.9 Score=35.57 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=17.2
Q ss_pred cEEEeccCCCchHHHHHHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l 132 (202)
.+++.|++|+|||...- .+...+
T Consensus 46 ~~li~G~~G~GKTtl~~-~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR-KLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHH-HHHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHHH
Confidence 69999999999997653 333444
No 302
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=71.64 E-value=1.8 Score=37.58 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.2
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..+++.||+|+|||...-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 369999999999997653
No 303
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=71.62 E-value=2 Score=32.26 Aligned_cols=16 Identities=31% Similarity=0.468 Sum_probs=13.6
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+.+.|++|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 304
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=71.59 E-value=5.3 Score=32.11 Aligned_cols=52 Identities=6% Similarity=-0.052 Sum_probs=31.3
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
|..+++.+.+|+|||...+--+.+.+.++. +++++.- -|-..++.+.++.++
T Consensus 21 gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge---~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 21 SLILIHEEDASSRGKDILFYILSRKLKSDN---LVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp CEEEEEECSGGGCHHHHHHHHHHHHHHTTC---EEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHHCCC---cEEEEEE-eCCHHHHHHHHHHcC
Confidence 456788877787777333334445566666 6777654 344455566665553
No 305
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.52 E-value=2.3 Score=38.30 Aligned_cols=16 Identities=13% Similarity=0.320 Sum_probs=14.6
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
++++.|++|+|||...
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999764
No 306
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=71.20 E-value=4.4 Score=33.42 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=14.8
Q ss_pred CcEEEeccCCCchHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~ 126 (202)
+-+.+.|++|+|||.....
T Consensus 106 ~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp EEEEEESSTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3477889999999977543
No 307
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=71.16 E-value=12 Score=40.37 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=29.8
Q ss_pred HHHHHHHHHCCCCCCcHHHH-HHHH---hHHcCCcEEEeccCCCchHHHHHH
Q 028887 79 EHVLRRMEETGYVLPTDIQR-EALP---VLFSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 79 ~~l~~~l~~~g~~~~t~~Q~-~~i~---~i~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
+.+.+.+.+.|+. +++.+. .++. .+.....+++.||||+|||.++-.
T Consensus 875 ~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 875 KKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 3455556677774 555443 2222 223345689999999999999754
No 308
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=71.14 E-value=3.2 Score=37.19 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=19.2
Q ss_pred hHHcCCcEEEeccCCCchHHHHH
Q 028887 103 VLFSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 103 ~i~~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..|..+++.||+|+|||...-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 45678899999999999997653
No 309
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=71.09 E-value=2.4 Score=31.23 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=15.1
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..+++.|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 458999999999998753
No 310
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=70.90 E-value=2.3 Score=31.14 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.6
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 6 ~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 6 NIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CEEEECCTTSCHHHHHH
T ss_pred EEEEEcCCCCCHHHHHH
Confidence 58999999999998753
No 311
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=70.89 E-value=2 Score=31.59 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.1
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 312
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=70.86 E-value=16 Score=26.29 Aligned_cols=44 Identities=23% Similarity=0.212 Sum_probs=30.8
Q ss_pred EEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH-HHHHHh
Q 028887 140 QAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK-SWLKVL 196 (202)
Q Consensus 140 ~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~l 196 (202)
++||.+++++.+..+.+.++...- . +..+||...+.++ +.++.+
T Consensus 32 ~~lVF~~~~~~~~~l~~~L~~~~~------------~-~~~~~~~~~~~~r~~~~~~f 76 (165)
T 1fuk_A 32 QAVIFCNTRRKVEELTTKLRNDKF------------T-VSAIYSDLPQQERDTIMKEF 76 (165)
T ss_dssp CEEEEESSHHHHHHHHHHHHHTTC------------C-EEEECTTSCHHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHcCC------------C-EEEEECCCCHHHHHHHHHHH
Confidence 799999999999999988877532 2 5667776655443 344443
No 313
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=70.83 E-value=2 Score=37.06 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.4
Q ss_pred cEEEeccCCCchHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+++.||||+|||.....
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 368899999999976543
No 314
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=70.80 E-value=2 Score=32.29 Aligned_cols=20 Identities=15% Similarity=0.155 Sum_probs=16.8
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+++.|+.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46779999999999998753
No 315
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=70.70 E-value=2.3 Score=32.48 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|+.|||||...-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999997643
No 316
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=70.69 E-value=2.1 Score=37.24 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.3
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l 132 (202)
..++++.|++|+|||...- .+...+
T Consensus 201 ~~~~LL~G~pG~GKT~la~-~la~~l 225 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAE-GLAQQI 225 (468)
T ss_dssp SCEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH-HHHHHH
Confidence 3579999999999997653 333444
No 317
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=70.68 E-value=1.2 Score=33.73 Aligned_cols=21 Identities=24% Similarity=-0.024 Sum_probs=16.5
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
..+.-+.+.|++|||||...-
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345568899999999997653
No 318
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=70.67 E-value=1.9 Score=32.50 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=17.3
Q ss_pred cCCcEEEeccCCCchHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|.-+++.|+.|||||...-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467799999999999987543
No 319
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=70.63 E-value=2.8 Score=38.53 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=19.0
Q ss_pred HHHhHHcCCc--EEEeccCCCchHHHH
Q 028887 100 ALPVLFSSRD--CILHAQTGSGKTLTY 124 (202)
Q Consensus 100 ~i~~i~~g~~--~l~~a~TGsGKT~~~ 124 (202)
.+..++.|.+ ++..|.||||||..-
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~Tm 480 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFTM 480 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhcc
Confidence 3445678876 678899999999764
No 320
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=70.51 E-value=1.7 Score=32.70 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.6
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|+.|||||...-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998743
No 321
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=70.38 E-value=6 Score=40.12 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=29.2
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCC
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPT 147 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Pt 147 (202)
|..+++.|++|+|||...+--..+.+..+. .++++.-.
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~---~vlYI~te 71 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFIDAE 71 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEECTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCC---ceEEEEec
Confidence 578999999999999887776666666554 57776543
No 322
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=70.31 E-value=2.4 Score=30.69 Aligned_cols=18 Identities=17% Similarity=0.139 Sum_probs=14.9
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
+.+++.|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 458899999999998753
No 323
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=70.28 E-value=2.4 Score=32.37 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999998653
No 324
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=70.12 E-value=4.1 Score=41.98 Aligned_cols=37 Identities=19% Similarity=0.151 Sum_probs=29.5
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
.|+.+++.|++|+|||...+.-+.+.+..+. +++++.
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge---~~~Fit 1116 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGK---TCAFID 1116 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTC---CEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEE
Confidence 4578999999999999998887777776655 566664
No 325
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=69.66 E-value=2.2 Score=37.88 Aligned_cols=20 Identities=25% Similarity=0.119 Sum_probs=16.8
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|..+++.||+|+|||...-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999997653
No 326
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=69.52 E-value=2.3 Score=32.27 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 327
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=69.37 E-value=2.7 Score=31.88 Aligned_cols=19 Identities=32% Similarity=0.422 Sum_probs=15.3
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
|..+.+.|++|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 4567899999999998653
No 328
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=69.09 E-value=2.6 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.7
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
.+++++.||+|+|||...
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999765
No 329
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=69.08 E-value=2.6 Score=34.68 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=23.1
Q ss_pred cHHHHHHHHhH----HcCC---cEEEeccCCCchHHHHHH
Q 028887 94 TDIQREALPVL----FSSR---DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 94 t~~Q~~~i~~i----~~g~---~~l~~a~TGsGKT~~~l~ 126 (202)
.|.|..++..+ .+|+ .+++.||.|+|||.....
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 46666666543 3443 389999999999977543
No 330
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=68.92 E-value=2.1 Score=35.83 Aligned_cols=16 Identities=25% Similarity=0.443 Sum_probs=13.7
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|+||+|||..+
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999874
No 331
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=68.90 E-value=2.3 Score=31.21 Aligned_cols=16 Identities=25% Similarity=0.279 Sum_probs=14.0
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+++.|+.|||||...
T Consensus 8 ~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999864
No 332
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=68.90 E-value=2.6 Score=33.16 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999654
No 333
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.82 E-value=2.7 Score=34.34 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.6
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.||+|+|||...-
T Consensus 38 ~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 49999999999997653
No 334
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.79 E-value=2.3 Score=37.40 Aligned_cols=18 Identities=33% Similarity=0.407 Sum_probs=15.6
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
+.++++||+|+|||...-
T Consensus 78 ~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp SEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 579999999999997754
No 335
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=68.63 E-value=5.7 Score=32.50 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.5
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
|.-+.+.|++|+|||...-
T Consensus 102 g~vi~lvG~nGsGKTTll~ 120 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA 120 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 5668889999999997643
No 336
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=68.56 E-value=2.6 Score=32.90 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=15.4
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
+..+++.|++|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467999999999999765
No 337
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=68.50 E-value=2.2 Score=37.39 Aligned_cols=17 Identities=35% Similarity=0.546 Sum_probs=14.9
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+++.||+|+|||...
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46999999999999775
No 338
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=68.45 E-value=2.4 Score=32.24 Aligned_cols=18 Identities=17% Similarity=0.200 Sum_probs=14.9
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..+.+.|++|||||...-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 458899999999998753
No 339
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=68.44 E-value=2.6 Score=33.64 Aligned_cols=17 Identities=29% Similarity=0.514 Sum_probs=14.6
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.++++||+|+|||...-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997643
No 340
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=68.42 E-value=2.9 Score=32.40 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=16.8
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45778899999999999764
No 341
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=68.33 E-value=2.8 Score=34.52 Aligned_cols=21 Identities=10% Similarity=0.044 Sum_probs=17.4
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
-.|..+.+.||+|+|||...-
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~ 144 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCN 144 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHHH
Confidence 467889999999999996643
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=68.09 E-value=2.5 Score=32.04 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.3
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 343
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=68.08 E-value=2 Score=31.52 Aligned_cols=19 Identities=32% Similarity=0.197 Sum_probs=11.9
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998754
No 344
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=68.03 E-value=2.3 Score=33.74 Aligned_cols=20 Identities=25% Similarity=0.077 Sum_probs=15.8
Q ss_pred CCcEEEeccCCCchHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
+.-+++.|++|||||...-.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHH
Confidence 34589999999999986543
No 345
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.95 E-value=6.6 Score=34.47 Aligned_cols=50 Identities=20% Similarity=0.257 Sum_probs=29.8
Q ss_pred HcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVA 158 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~ 158 (202)
..|.-+++.|++|+|||.....-+-.....+. +++++++... ..|+...+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~---~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACANKE---RAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC---CEEEEESSSC-HHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCC---CEEEEEEeCC-HHHHHHHH
Confidence 45677999999999999765443322222222 4677766533 23554444
No 346
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=67.92 E-value=2.5 Score=30.68 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.8
Q ss_pred CcEEEeccCCCchHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~ 126 (202)
+++++.|..|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999987543
No 347
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=67.82 E-value=5.9 Score=34.15 Aligned_cols=34 Identities=24% Similarity=0.203 Sum_probs=22.3
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
.+++.|++|+|||.............+. +++++.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~---kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGL---KPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHC---CEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC---eEEEEe
Confidence 6889999999999876554433333343 455543
No 348
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=67.78 E-value=5.9 Score=32.35 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.2
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
|.-+.+.|++|+|||...-
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 3457899999999998653
No 349
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=67.65 E-value=21 Score=26.03 Aligned_cols=44 Identities=16% Similarity=0.188 Sum_probs=31.3
Q ss_pred EEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH-HHHHHh
Q 028887 140 QAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK-SWLKVL 196 (202)
Q Consensus 140 ~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~l 196 (202)
++||.+++++.+..+.+.+...+- . +..+||...+.++ +.++.+
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~~------------~-~~~~hg~~~~~~r~~~~~~f 77 (172)
T 1t5i_A 33 QVVIFVKSVQRCIALAQLLVEQNF------------P-AIAIHRGMPQEERLSRYQQF 77 (172)
T ss_dssp SEEEECSSHHHHHHHHHHHHHTTC------------C-EEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHhcCC------------C-EEEEECCCCHHHHHHHHHHH
Confidence 799999999999999998877632 2 5667776655543 444443
No 350
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=67.52 E-value=2.5 Score=31.70 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=14.4
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999875
No 351
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=67.49 E-value=2.8 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.024 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 352
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=67.49 E-value=2.6 Score=32.58 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.3
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..+++.|+.|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34679999999999997643
No 353
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=67.32 E-value=2.9 Score=32.62 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.7
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35778899999999999654
No 354
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=67.19 E-value=2.6 Score=38.82 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=18.4
Q ss_pred CCcEEEeccCCCchHHHHHHHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLIFSLV 132 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~l~~l 132 (202)
..++++.|++|+|||.+.- .+.+.+
T Consensus 201 ~~~vLL~G~pGtGKT~la~-~la~~l 225 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIAE-GLAQQI 225 (758)
T ss_dssp SCEEEEESCTTTTTHHHHH-HHHHHH
T ss_pred CCCeEEECCCCCCHHHHHH-HHHHHH
Confidence 4589999999999997653 333444
No 355
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=67.06 E-value=2.9 Score=32.53 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.3
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999654
No 356
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=67.00 E-value=2.5 Score=44.68 Aligned_cols=21 Identities=48% Similarity=0.590 Sum_probs=18.2
Q ss_pred HHcCCcEEEeccCCCchHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~ 124 (202)
+..++.++++||||+|||...
T Consensus 1264 l~~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1264 LNSKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HHHTCEEEEECSTTSSHHHHH
T ss_pred HHCCCeEEEECCCCCCHHHHH
Confidence 456899999999999999765
No 357
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=66.95 E-value=6 Score=36.24 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHhHHc--CCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHH
Q 028887 92 LPTDIQREALPVLFS--SRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKV 157 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~--g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~ 157 (202)
.+|..|.+++..+.. ....++.|.-|.|||.+.-+.+.. +. + .++|.+|+.+=+..+.+.
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~-~----~~~vtAP~~~a~~~l~~~ 236 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IA-G----RAIVTAPAKASTDVLAQF 236 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SS-S----CEEEECSSCCSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HH-h----CcEEECCCHHHHHHHHHH
Confidence 679999999988765 234789999999999655444433 21 2 368889998766655443
No 358
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=66.95 E-value=2.7 Score=31.53 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+.+.|+.|||||...-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47889999999998753
No 359
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=66.67 E-value=2.6 Score=31.25 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=14.0
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999997643
No 360
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=66.65 E-value=3 Score=32.99 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.1
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
..|.-+.+.|++|+|||...-
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~ 53 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTK 53 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 357778999999999997653
No 361
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=66.61 E-value=2.9 Score=33.76 Aligned_cols=20 Identities=15% Similarity=0.225 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999764
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=66.50 E-value=2.9 Score=32.78 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.2
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..+++.|+.|||||...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34569999999999997753
No 363
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=66.27 E-value=3.1 Score=32.69 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999764
No 364
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=66.26 E-value=3.1 Score=33.20 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=17.0
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45778999999999999764
No 365
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=66.22 E-value=3.1 Score=33.07 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred eCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999764
No 366
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=66.07 E-value=2.8 Score=30.85 Aligned_cols=17 Identities=29% Similarity=0.210 Sum_probs=13.9
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 37889999999997643
No 367
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=66.06 E-value=3.1 Score=32.77 Aligned_cols=20 Identities=15% Similarity=0.152 Sum_probs=16.6
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|..+.+.|++|||||...-
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k 45 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCK 45 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999998753
No 368
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=65.78 E-value=7 Score=34.29 Aligned_cols=29 Identities=21% Similarity=0.393 Sum_probs=21.2
Q ss_pred HcCCcEEEeccCCCchHHHHHHHHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~~~l~~l~ 133 (202)
..|.-+.+.|++|+|||.....-++.-+.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999876654333333
No 369
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=65.75 E-value=3 Score=31.33 Aligned_cols=17 Identities=35% Similarity=0.165 Sum_probs=13.9
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+.+.|+.|||||.+.-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998753
No 370
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=65.73 E-value=2.8 Score=30.98 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=14.1
Q ss_pred EEEeccCCCchHHHHHH
Q 028887 110 CILHAQTGSGKTLTYLL 126 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~ 126 (202)
+++.|+.|||||...-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999977543
No 371
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=65.56 E-value=3.2 Score=33.25 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.5
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677889999999999764
No 372
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=65.55 E-value=5.7 Score=32.47 Aligned_cols=17 Identities=24% Similarity=0.294 Sum_probs=14.4
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.++++|++|+|||...-
T Consensus 40 ~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47999999999997653
No 373
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=65.26 E-value=2.6 Score=39.31 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=16.2
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.++.++++|++|+|||...
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 3567999999999999764
No 374
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=65.16 E-value=3.3 Score=33.04 Aligned_cols=20 Identities=20% Similarity=0.195 Sum_probs=16.4
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 30 ~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999754
No 375
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=65.06 E-value=3.1 Score=31.81 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.5
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999997643
No 376
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=64.90 E-value=3 Score=30.70 Aligned_cols=20 Identities=25% Similarity=0.202 Sum_probs=16.1
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|+.|+|||...
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45667889999999999653
No 377
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=64.89 E-value=3.4 Score=32.67 Aligned_cols=21 Identities=19% Similarity=0.096 Sum_probs=17.2
Q ss_pred HcCCcEEEeccCCCchHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l 125 (202)
..|.-+.+.|++|+|||...-
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 356778899999999997653
No 378
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=64.75 E-value=2.8 Score=32.96 Aligned_cols=20 Identities=15% Similarity=0.290 Sum_probs=16.5
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999764
No 379
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=64.64 E-value=2.3 Score=33.50 Aligned_cols=19 Identities=32% Similarity=0.359 Sum_probs=15.4
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+++.|++|||||...-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458999999999997653
No 380
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=64.48 E-value=3.5 Score=33.02 Aligned_cols=20 Identities=20% Similarity=0.235 Sum_probs=16.8
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLl 63 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLS 63 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677899999999999765
No 381
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=64.35 E-value=3.3 Score=31.57 Aligned_cols=16 Identities=31% Similarity=0.381 Sum_probs=13.6
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||..+
T Consensus 25 ~~~I~G~NgsGKStil 40 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4688999999999774
No 382
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=64.34 E-value=3.5 Score=32.95 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677889999999999764
No 383
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=64.05 E-value=6.5 Score=31.99 Aligned_cols=19 Identities=37% Similarity=0.289 Sum_probs=14.7
Q ss_pred cEEEeccCCCchHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~ 127 (202)
-+.+.|++|+|||......
T Consensus 100 vi~i~G~~G~GKTT~~~~l 118 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKL 118 (297)
T ss_dssp EEEEECSSCSSTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4677899999999765443
No 384
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=64.02 E-value=3.6 Score=32.64 Aligned_cols=20 Identities=20% Similarity=0.175 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 24 ~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677889999999999764
No 385
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=63.86 E-value=3.7 Score=32.64 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.5
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35677889999999999764
No 386
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=63.86 E-value=3.6 Score=33.02 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=16.7
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45777899999999999654
No 387
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=63.49 E-value=3.7 Score=32.70 Aligned_cols=20 Identities=30% Similarity=0.199 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 39 ~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 35677889999999999764
No 388
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=63.45 E-value=3 Score=31.45 Aligned_cols=19 Identities=21% Similarity=-0.032 Sum_probs=15.2
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+.-+.+.|++|||||...-
T Consensus 22 ~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3458899999999997653
No 389
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=63.40 E-value=7.9 Score=31.37 Aligned_cols=20 Identities=35% Similarity=0.232 Sum_probs=15.0
Q ss_pred CCcEEEeccCCCchHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~ 126 (202)
|+-+.+.|++|+|||.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 44577789999999976443
No 390
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=63.27 E-value=5.3 Score=36.74 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=14.9
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.||||+|||...-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999998754
No 391
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=63.23 E-value=59 Score=28.09 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=40.8
Q ss_pred chHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH
Q 028887 119 GKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK 190 (202)
Q Consensus 119 GKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (202)
.+....+..+...+.....+.++||.++++.-+..+.+.+++..... +. +..+||...+.++
T Consensus 320 ~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~---------~~-v~~~h~~~~~~~R 381 (563)
T 3i5x_A 320 NSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD---------LP-ILEFHGKITQNKR 381 (563)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTT---------SC-EEEESTTSCHHHH
T ss_pred hhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCC---------ce-EEEecCCCCHHHH
Confidence 33333444444555443445589999999999999999998876532 22 5667777666554
No 392
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=63.14 E-value=3.2 Score=38.86 Aligned_cols=17 Identities=41% Similarity=0.595 Sum_probs=15.2
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||+..
T Consensus 239 ~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999875
No 393
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=63.10 E-value=3.8 Score=33.10 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 45 ~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677889999999999764
No 394
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=63.04 E-value=3.5 Score=31.30 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997653
No 395
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=62.93 E-value=3.9 Score=32.77 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.5
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 48 ~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCCcHHHHH
Confidence 35677889999999999764
No 396
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=62.85 E-value=7.9 Score=32.54 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=14.8
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
.-+.+.|++|+|||...-
T Consensus 158 ~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEEcCCCChHHHHHH
Confidence 457899999999998754
No 397
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=62.63 E-value=8.6 Score=33.14 Aligned_cols=34 Identities=21% Similarity=0.221 Sum_probs=21.8
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHh-cCCccEEEEec
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNA-QRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~-~~~~~~~Lil~ 145 (202)
.+++.|++|+|||....-........ +. +++++.
T Consensus 102 vI~ivG~~GvGKTT~a~~LA~~l~~~~G~---kVllvd 136 (433)
T 2xxa_A 102 VVLMAGLQGAGKTTSVGKLGKFLREKHKK---KVLVVS 136 (433)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTSCC---CEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCC---eEEEEe
Confidence 46778999999998766554443333 33 455543
No 398
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=62.48 E-value=24 Score=26.68 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=31.0
Q ss_pred EEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHH-HHHHHHh
Q 028887 140 QAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRH-KSWLKVL 196 (202)
Q Consensus 140 ~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~l~~l 196 (202)
++||.+++++-+..+.+.+...+-. +..+||...+.+ .+.++.+
T Consensus 33 ~~lVF~~~~~~~~~l~~~L~~~~~~-------------~~~lhg~~~~~~r~~~~~~f 77 (212)
T 3eaq_A 33 RAMVFTRTKAETEEIAQGLLRLGHP-------------AQALHGDLSQGERERVLGAF 77 (212)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTCC-------------EEEECSSSCHHHHHHHHHHH
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCC-------------EEEEECCCCHHHHHHHHHHH
Confidence 7999999999999999988876422 556677655544 4444444
No 399
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=62.32 E-value=3.4 Score=30.65 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.4
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+.+.|++|||||.+.-
T Consensus 10 ~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 400
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=62.13 E-value=3.1 Score=31.57 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=14.8
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
.-+.+.|+.|||||.+.-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998643
No 401
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=61.99 E-value=8.5 Score=31.85 Aligned_cols=18 Identities=33% Similarity=0.318 Sum_probs=15.1
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|++|+|||...
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 402
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=61.72 E-value=9.3 Score=33.95 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=24.9
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
+-+++.|..|.|||.+.+.........++ ++|++.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~---rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGK---RVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCC---cEEEEE
Confidence 45788899999999987766655555554 566643
No 403
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=61.67 E-value=9.3 Score=31.23 Aligned_cols=34 Identities=12% Similarity=0.219 Sum_probs=22.6
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
-++..+..|.|||.+...........++ ++|++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGK---KTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTC---CEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCC---cEEEEe
Confidence 3577789999999887665555444444 555553
No 404
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=61.52 E-value=20 Score=30.85 Aligned_cols=34 Identities=18% Similarity=0.204 Sum_probs=24.7
Q ss_pred CcHHHHHHHHhH---HcCCcEEEeccCCCchHHHHHH
Q 028887 93 PTDIQREALPVL---FSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 93 ~t~~Q~~~i~~i---~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
|-..-..+|..+ -.|..+.+.|++|+|||.....
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 334455566554 4688999999999999987643
No 405
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=61.41 E-value=3.9 Score=32.67 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.5
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.++++|++|+|||....
T Consensus 44 ~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CEEEECSTTSSHHHHHH
T ss_pred eEEEECcCCCCHHHHHH
Confidence 49999999999997643
No 406
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=61.35 E-value=3.7 Score=36.20 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.7
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.+++.||+|+|||...
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 35999999999999765
No 407
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=61.04 E-value=4.1 Score=31.30 Aligned_cols=17 Identities=24% Similarity=0.327 Sum_probs=14.1
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.|+.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 408
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=61.01 E-value=3.7 Score=31.70 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=15.4
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|+|||...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCEEEEEECSTTSCHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3556889999999999753
No 409
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=60.92 E-value=3.3 Score=32.32 Aligned_cols=20 Identities=20% Similarity=0.009 Sum_probs=15.7
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|.-+-+.|++|||||...-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34457889999999998753
No 410
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=60.92 E-value=3.4 Score=33.96 Aligned_cols=20 Identities=20% Similarity=0.376 Sum_probs=17.0
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 45778999999999999765
No 411
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=60.77 E-value=4 Score=33.70 Aligned_cols=17 Identities=29% Similarity=0.280 Sum_probs=14.0
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-.++.||+|+|||...-
T Consensus 25 ~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35789999999998753
No 412
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=60.51 E-value=5 Score=30.55 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=18.6
Q ss_pred cCCcEEEeccCCCchHHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~ 128 (202)
.|+-+++.|++|+||+...+..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~ 37 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALI 37 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHH
Confidence 46779999999999997765544
No 413
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.36 E-value=3.7 Score=37.72 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.8
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+++.||+|+|||...-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 58999999999998753
No 414
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.31 E-value=4.1 Score=37.35 Aligned_cols=19 Identities=26% Similarity=0.336 Sum_probs=16.0
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+.++++.|++|+|||...-
T Consensus 207 ~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHH
Confidence 4679999999999997643
No 415
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=60.28 E-value=4.2 Score=32.51 Aligned_cols=17 Identities=24% Similarity=0.071 Sum_probs=14.3
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-+++.|++|||||...-
T Consensus 4 ~I~l~G~~GsGKST~a~ 20 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAR 20 (301)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998653
No 416
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=60.07 E-value=9.1 Score=33.82 Aligned_cols=19 Identities=26% Similarity=0.139 Sum_probs=15.1
Q ss_pred CcEEEeccCCCchHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~ 126 (202)
.-+.+.|++|+|||...-.
T Consensus 294 eVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 294 FVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCcccHHHHHHH
Confidence 3578999999999976543
No 417
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=59.79 E-value=2.6 Score=31.73 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=13.0
Q ss_pred EEEeccCCCchHHHH
Q 028887 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+++.|++|||||...
T Consensus 3 I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 688999999999764
No 418
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=59.63 E-value=72 Score=27.87 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=37.6
Q ss_pred HHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH
Q 028887 125 LLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK 190 (202)
Q Consensus 125 l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (202)
+..+...+.......++||.++++.-+..+.+.+++..... +. +..+||...+.++
T Consensus 275 ~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~---------~~-v~~~hg~~~~~~R 330 (579)
T 3sqw_A 275 VEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKD---------LP-ILEFHGKITQNKR 330 (579)
T ss_dssp HHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTT---------SC-EEEESTTSCHHHH
T ss_pred HHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCC---------Cc-EEEecCCCCHHHH
Confidence 33444444433444589999999999999999998876431 22 5667777666553
No 419
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=59.62 E-value=9.2 Score=31.40 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=22.3
Q ss_pred cEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEe
Q 028887 109 DCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil 144 (202)
-+++.+..|.|||.+...........++ +++++
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~---rVllv 53 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRS---SVLLI 53 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSS---CEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCC---eEEEE
Confidence 3677889999999887665544444444 56665
No 420
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=59.51 E-value=4.5 Score=37.84 Aligned_cols=16 Identities=31% Similarity=0.356 Sum_probs=14.3
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.||+|+|||...
T Consensus 590 ~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEBSCSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999865
No 421
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=59.25 E-value=4.2 Score=43.68 Aligned_cols=20 Identities=50% Similarity=0.620 Sum_probs=17.3
Q ss_pred HHcCCcEEEeccCCCchHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLT 123 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~ 123 (202)
+..++.++++||||+|||..
T Consensus 1301 l~~~~pvLL~GptGtGKT~l 1320 (3245)
T 3vkg_A 1301 LSEHRPLILCGPPGSGKTMT 1320 (3245)
T ss_dssp HHTTCCCEEESSTTSSHHHH
T ss_pred HHCCCcEEEECCCCCCHHHH
Confidence 45789999999999999954
No 422
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=59.24 E-value=21 Score=26.40 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=27.3
Q ss_pred CCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 117 GSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 117 GsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
.+.|.. .+.-++.... ...++||.++++.-+..+.+.++..
T Consensus 29 ~~~K~~-~L~~ll~~~~---~~~k~lVF~~~~~~~~~l~~~L~~~ 69 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATG---KDSLTLVFVETKKGADSLEDFLYHE 69 (185)
T ss_dssp GGGHHH-HHHHHHHHC----CCSCEEEEESCHHHHHHHHHHHHHT
T ss_pred cHHHHH-HHHHHHHhcC---CCCeEEEEECCHHHHHHHHHHHHHc
Confidence 456654 3333433322 3347999999999999999888765
No 423
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=59.23 E-value=5.7 Score=36.56 Aligned_cols=33 Identities=18% Similarity=0.252 Sum_probs=25.1
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~ 124 (202)
+.+.+=..|+..++. .+.+|+.|.+|+|||++.
T Consensus 76 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 76 HMYALANDAYRSMRQSQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 456677777776653 346999999999999984
No 424
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=59.18 E-value=9.8 Score=31.02 Aligned_cols=15 Identities=33% Similarity=0.446 Sum_probs=13.1
Q ss_pred EEEeccCCCchHHHH
Q 028887 110 CILHAQTGSGKTLTY 124 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~ 124 (202)
+++.|+.|+|||...
T Consensus 7 ~~i~G~~GaGKTTll 21 (318)
T 1nij_A 7 TLLTGFLGAGKTTLL 21 (318)
T ss_dssp EEEEESSSSSCHHHH
T ss_pred EEEEecCCCCHHHHH
Confidence 688999999999764
No 425
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=59.17 E-value=4.7 Score=32.78 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.8
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35677899999999999764
No 426
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=58.92 E-value=4.7 Score=32.26 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.1
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
|.-+.+.|++|+|||...-
T Consensus 30 Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp SSEEEEECCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 7778899999999997653
No 427
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=58.84 E-value=7.3 Score=33.24 Aligned_cols=40 Identities=10% Similarity=-0.001 Sum_probs=24.2
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHHh---cCCccEEEEecCC
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVNA---QRSAVQAVIVVPT 147 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~~---~~~~~~~Lil~Pt 147 (202)
.-+.+.|++|+|||.....-++..+.. +..+-.++++.-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 568999999999997766433332221 1122356666543
No 428
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=58.49 E-value=4.2 Score=32.90 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=13.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-+++.||+|+|||...-
T Consensus 50 ~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAK 66 (324)
T ss_dssp EEEECSSTTSSHHHHHH
T ss_pred EEEeeCcCCCCHHHHHH
Confidence 35777889999997754
No 429
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=58.38 E-value=4.3 Score=33.35 Aligned_cols=19 Identities=16% Similarity=-0.027 Sum_probs=15.4
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+.+.|++|||||...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCchHHHHH
Confidence 3556889999999999764
No 430
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=58.36 E-value=8.5 Score=29.10 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred EEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHH
Q 028887 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRE 149 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~ 149 (202)
+++.|++|||||....--. .. +..++|+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la-----~~--~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALI-----GD--APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHH-----CS--CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHH-----hc--CCCeEEEecCCC
Confidence 6889999999996554322 11 225788877543
No 431
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=58.18 E-value=11 Score=31.12 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=22.1
Q ss_pred EEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEec
Q 028887 110 CILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVV 145 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~ 145 (202)
+++.+..|.|||.+...........++ ++|++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~---rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGL---KVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSC---CEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCC---eEEEEe
Confidence 567789999999887655544444444 566554
No 432
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=58.07 E-value=6 Score=33.03 Aligned_cols=25 Identities=28% Similarity=0.129 Sum_probs=18.5
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFS 130 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~ 130 (202)
.|..+++.|++|+|||...+....+
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3456799999999999776554433
No 433
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=57.91 E-value=37 Score=27.85 Aligned_cols=41 Identities=10% Similarity=0.090 Sum_probs=30.3
Q ss_pred CccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH
Q 028887 137 SAVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK 190 (202)
Q Consensus 137 ~~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 190 (202)
.+.++||.+++++.+..+.+.+++.... +..+||....+++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~-------------~~~~h~~~~~~~r 315 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYA-------------CTSIHGDRSQRDR 315 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCC-------------EEEECTTSCHHHH
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCC-------------eeEecCCCCHHHH
Confidence 3458999999999999999988875322 5677776665543
No 434
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=57.91 E-value=6.8 Score=31.47 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=16.1
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|+.+++.|+.|+|||...
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp HCSEEEEECCTTSSHHHHH
T ss_pred cCCeEEEECCCcCCHHHHH
Confidence 3578999999999999764
No 435
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=57.75 E-value=3.8 Score=30.59 Aligned_cols=18 Identities=22% Similarity=0.067 Sum_probs=14.0
Q ss_pred cEEEeccCCCchHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~ 126 (202)
-+.+.|++|||||...-.
T Consensus 4 ~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp EEEEEESCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 467889999999976543
No 436
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=57.33 E-value=9.7 Score=32.79 Aligned_cols=21 Identities=38% Similarity=0.275 Sum_probs=15.5
Q ss_pred CcEEEeccCCCchHHHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~ 128 (202)
+-+.+.|++|+|||.......
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA 119 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLA 119 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346778999999997754433
No 437
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=57.11 E-value=5.1 Score=32.53 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=13.6
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+.+.|++|||||...
T Consensus 33 ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4778999999999764
No 438
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=57.00 E-value=5.5 Score=33.74 Aligned_cols=20 Identities=25% Similarity=0.248 Sum_probs=16.5
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.|+.+++.||+|+|||...-
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~ 187 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAA 187 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46779999999999997643
No 439
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=56.85 E-value=13 Score=31.27 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=19.3
Q ss_pred HHhHHcCCcEEEeccCCCchHHHH
Q 028887 101 LPVLFSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 101 i~~i~~g~~~l~~a~TGsGKT~~~ 124 (202)
+.....|..+.+.|++|+|||...
T Consensus 209 L~~~~~G~~~~lvG~sG~GKSTLl 232 (358)
T 2rcn_A 209 LEEALTGRISIFAGQSGVGKSSLL 232 (358)
T ss_dssp HHHHHTTSEEEEECCTTSSHHHHH
T ss_pred HHHhcCCCEEEEECCCCccHHHHH
Confidence 344568889999999999999653
No 440
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=56.79 E-value=16 Score=27.45 Aligned_cols=33 Identities=21% Similarity=0.173 Sum_probs=20.7
Q ss_pred EEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecC
Q 028887 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVP 146 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~P 146 (202)
+....+|+|||.+.+--.......+. +++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~---rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGY---RTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTC---CEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCC---CEEEEcc
Confidence 44557899999887655544444444 6666544
No 441
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=56.45 E-value=6.6 Score=36.66 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~ 124 (202)
+.+.+=..|+..++. .+.+|+.|.+|+|||++.
T Consensus 122 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 122 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehH
Confidence 336666777766653 356999999999999884
No 442
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=56.36 E-value=4.7 Score=31.37 Aligned_cols=19 Identities=32% Similarity=0.277 Sum_probs=16.2
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|.-+++.|+.|+|||...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 5677999999999999764
No 443
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=56.31 E-value=5.6 Score=29.58 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=14.2
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+.+.|+.|||||.+.-
T Consensus 4 ~i~i~G~~GsGKst~~~ 20 (208)
T 3ake_A 4 IVTIDGPSASGKSSVAR 20 (208)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998753
No 444
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=56.24 E-value=25 Score=28.91 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=17.5
Q ss_pred CCcEEEeccCCCchHHHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~ 128 (202)
|+.+++.|++|+||+...+..+
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~ 165 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELI 165 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEEEeCCCCCHHHHHHHHH
Confidence 7789999999999976654443
No 445
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=56.24 E-value=9.3 Score=31.56 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=13.5
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-+.+.|++|||||...
T Consensus 94 iigI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3788999999999764
No 446
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=55.76 E-value=9.4 Score=37.09 Aligned_cols=53 Identities=11% Similarity=0.174 Sum_probs=39.3
Q ss_pred HHcCCcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHhh
Q 028887 104 LFSSRDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVLA 162 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l~ 162 (202)
+..|....+.|.+||||+++... ++ ... .. ..||++|+...|.|+++.++.+.
T Consensus 14 ~~~~~~~~l~G~~gs~ka~~~a~-l~---~~~-~~-p~lvv~~~~~~A~~l~~el~~f~ 66 (1151)
T 2eyq_A 14 VKAGEQRLLGELTGAACATLVAE-IA---ERH-AG-PVVLIAPDMQNALRLHDEISQFT 66 (1151)
T ss_dssp CSTTCBCCBCCCCTTHHHHHHHH-HH---HSS-SS-EEEEEESSHHHHHHHHHHHGGGC
T ss_pred CCCCCeEEEeCCchHHHHHHHHH-HH---Hhh-CC-CEEEEeCCHHHHHHHHHHHHhhc
Confidence 34555567889999999876542 21 221 12 58999999999999999999986
No 447
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=55.69 E-value=7 Score=36.46 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=25.5
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~l~ 126 (202)
+.+.+=..|+..++. .+.+|+.|.+|+|||++.=.
T Consensus 153 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~ 190 (783)
T 4db1_A 153 HIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKR 190 (783)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHH
Confidence 445666777766653 34699999999999998533
No 448
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=55.68 E-value=7 Score=36.38 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~l 125 (202)
+.+.+=..|+..++. .+.+++.|.+|+|||++.=
T Consensus 154 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK 190 (770)
T 1w9i_A 154 HIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTK 190 (770)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHH
Confidence 345566666666543 3469999999999999843
No 449
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=55.64 E-value=5.7 Score=31.26 Aligned_cols=17 Identities=35% Similarity=0.686 Sum_probs=14.0
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
.-+.+.||+|+|||...
T Consensus 25 e~~~liG~nGsGKSTLl 41 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFL 41 (240)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 44678999999999764
No 450
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=55.43 E-value=6.6 Score=30.30 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.2
Q ss_pred cCCcEEEeccCCCchHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l 125 (202)
.+..+.+.|+.|||||.+.-
T Consensus 15 ~~~~i~i~G~~gsGKst~~~ 34 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAK 34 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 34568899999999998753
No 451
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=55.05 E-value=7.3 Score=36.42 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~ 124 (202)
+.+.+=..|+..++. .+.+++.|.+|+|||++.
T Consensus 138 HifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 138 HIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHH
Confidence 445666677766653 346999999999999984
No 452
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=54.98 E-value=4.9 Score=37.61 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=14.9
Q ss_pred CcEEEeccCCCchHHHH
Q 028887 108 RDCILHAQTGSGKTLTY 124 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~ 124 (202)
+.++++||+|+|||+..
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 56999999999999765
No 453
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=54.69 E-value=5.2 Score=32.55 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.6
Q ss_pred CCcEEEeccCCCchHHHH
Q 028887 107 SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~ 124 (202)
|.-+.+.|++|||||...
T Consensus 80 g~iigI~G~~GsGKSTl~ 97 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTA 97 (308)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345788999999999764
No 454
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=54.54 E-value=5.3 Score=29.68 Aligned_cols=19 Identities=11% Similarity=0.307 Sum_probs=15.8
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
.|..+.+.|++|+|||..+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSEEEEEEECTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4566999999999999754
No 455
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=54.32 E-value=31 Score=25.67 Aligned_cols=44 Identities=7% Similarity=0.081 Sum_probs=31.0
Q ss_pred cEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH-HHHHH
Q 028887 139 VQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK-SWLKV 195 (202)
Q Consensus 139 ~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~ 195 (202)
.++||.+++++.+..+.+.++..+- . +..++|...+.++ +.++.
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~g~------------~-~~~lhg~~~~~~R~~~l~~ 99 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLKGV------------E-AVAIHGGKDQEERTKAIEA 99 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHHTC------------C-EEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCC------------c-EEEEeCCCCHHHHHHHHHH
Confidence 3799999999999999998877632 2 5567776655543 33443
No 456
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=53.93 E-value=5.6 Score=30.56 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=13.3
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+++.||+||||+...
T Consensus 2 ~Iil~GpPGsGKgTqa 17 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQA 17 (206)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999998654
No 457
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=53.92 E-value=6 Score=29.97 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=14.1
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
.+.+.|..|||||.+.-
T Consensus 14 iIgltG~~GSGKSTva~ 30 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCE 30 (192)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47789999999998753
No 458
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=53.83 E-value=6.3 Score=30.79 Aligned_cols=17 Identities=24% Similarity=0.085 Sum_probs=14.3
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-+.+.|+.|||||.+.-
T Consensus 24 iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 459
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=53.64 E-value=7.7 Score=32.10 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=14.8
Q ss_pred CcEEE--eccCCCchHHHHH
Q 028887 108 RDCIL--HAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~--~a~TGsGKT~~~l 125 (202)
..+++ .|+.|+|||...-
T Consensus 51 ~~~li~i~G~~G~GKT~L~~ 70 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLAK 70 (412)
T ss_dssp EEEEEECTTCCSSSHHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHHH
Confidence 45888 9999999997654
No 460
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=53.62 E-value=5.4 Score=37.52 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=24.3
Q ss_pred CCcHHHHHHHHhHHc-C--CcEEEeccCCCchHHHHH
Q 028887 92 LPTDIQREALPVLFS-S--RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~-g--~~~l~~a~TGsGKT~~~l 125 (202)
+.+.+=..|+..++. + +.+|+.|.+|+|||++.=
T Consensus 151 HifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK 187 (837)
T 1kk8_A 151 HLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTK 187 (837)
T ss_dssp CHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHH
Confidence 334566666666553 2 469999999999999843
No 461
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=53.59 E-value=6.5 Score=30.35 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=19.9
Q ss_pred cCCcEEEeccCCCchHHHHHHHHHHHHHh
Q 028887 106 SSRDCILHAQTGSGKTLTYLLLIFSLVNA 134 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~~~l~~l~~ 134 (202)
.|.-+++.|+.|+|||...-.. .+.+..
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l-~~~l~~ 29 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVV-VETLEQ 29 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHH-HHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH-HHHHHH
Confidence 4777999999999999775332 344443
No 462
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=53.55 E-value=6.5 Score=33.11 Aligned_cols=20 Identities=20% Similarity=0.189 Sum_probs=16.2
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 28 ~~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCchHHHHH
Confidence 35677889999999999653
No 463
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=53.15 E-value=7.1 Score=32.47 Aligned_cols=22 Identities=27% Similarity=0.158 Sum_probs=17.4
Q ss_pred CCcEEEeccCCCchHHHHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYLLLI 128 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l~~~ 128 (202)
|.-+.+.|++|+|||......+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3568999999999998765544
No 464
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=53.15 E-value=6.9 Score=32.87 Aligned_cols=20 Identities=30% Similarity=0.225 Sum_probs=16.7
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 39 ~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 35777899999999999764
No 465
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=52.95 E-value=7 Score=32.88 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.4
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHH
Confidence 35677889999999999764
No 466
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=52.53 E-value=11 Score=30.24 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=15.1
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
..+++.|+.|+|||....
T Consensus 31 ~~v~i~G~~G~GKT~L~~ 48 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIK 48 (357)
T ss_dssp SEEEEEESTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 578999999999996643
No 467
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=52.50 E-value=6.5 Score=31.51 Aligned_cols=17 Identities=29% Similarity=0.180 Sum_probs=14.4
Q ss_pred cEEEeccCCCchHHHHH
Q 028887 109 DCILHAQTGSGKTLTYL 125 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l 125 (202)
-+.+.|+.|||||.+.-
T Consensus 77 iI~I~G~~GSGKSTva~ 93 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQ 93 (281)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 48899999999998753
No 468
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=52.41 E-value=7.2 Score=32.83 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.4
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCchHHHHH
Confidence 35677889999999999764
No 469
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=52.35 E-value=11 Score=36.37 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=25.7
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~l 125 (202)
+.+.+-..|+..++. .+.+|+.|.+|+|||++.=
T Consensus 126 HIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK 162 (1052)
T 4anj_A 126 HVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 162 (1052)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHH
Confidence 446677777777653 3569999999999999853
No 470
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=52.32 E-value=15 Score=30.39 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.4
Q ss_pred cEEEeccCCCchHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~ 127 (202)
.+.+.|++|+|||..+.--
T Consensus 81 ~I~i~G~~G~GKSTl~~~L 99 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEAL 99 (355)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5888999999999776443
No 471
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=52.23 E-value=53 Score=25.98 Aligned_cols=44 Identities=14% Similarity=0.193 Sum_probs=31.1
Q ss_pred cCCCchHHHHHHHHHHHHHhcCCccEEEEecCCHHhHHHHHHHHHHh
Q 028887 115 QTGSGKTLTYLLLIFSLVNAQRSAVQAVIVVPTRELGMQVTKVARVL 161 (202)
Q Consensus 115 ~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil~Ptr~La~Q~~~~~~~l 161 (202)
...+||..+..--+-+....+. ++||.+.++..+..+.+.+...
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~---kvlIFs~~~~~~~~l~~~L~~~ 135 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGD---KIAIFTQFVDMGKIIRNIIEKE 135 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTC---CEEEEESCHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHhCCC---eEEEEeccHHHHHHHHHHHHHh
Confidence 3568887665444333334444 7999999999999988888764
No 472
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=52.17 E-value=8.3 Score=29.04 Aligned_cols=19 Identities=16% Similarity=0.195 Sum_probs=15.7
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
+..+.+.|+.|||||.+.-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999998853
No 473
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=51.94 E-value=17 Score=27.51 Aligned_cols=31 Identities=29% Similarity=0.377 Sum_probs=19.3
Q ss_pred EEeccCCCchHHHHHHHHHHHHHhcCCccEEEEe
Q 028887 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil 144 (202)
+..+..|+|||...+.........+. +++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~Vlli 37 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGR---KVLAV 37 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCC---eEEEE
Confidence 44567899999886654443333343 56665
No 474
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=51.82 E-value=19 Score=27.80 Aligned_cols=31 Identities=26% Similarity=0.295 Sum_probs=19.8
Q ss_pred EEeccCCCchHHHHHHHHHHHHHhcCCccEEEEe
Q 028887 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil 144 (202)
+..+..|+|||...+.........+. +++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~Vlli 37 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGH---DVTIV 37 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCC---cEEEE
Confidence 45678899999886654444333343 56665
No 475
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=51.73 E-value=7.2 Score=33.19 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=17.0
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 45 ~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCChHHHHH
Confidence 45778999999999999764
No 476
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=51.70 E-value=6.2 Score=30.44 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=17.3
Q ss_pred HcCCcEEEeccCCCchHHHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
..|.-+++.|+.|+|||...-.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHH
Confidence 3577799999999999977543
No 477
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.54 E-value=6 Score=32.31 Aligned_cols=16 Identities=25% Similarity=0.277 Sum_probs=13.9
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
-.++.|++|+|||...
T Consensus 26 ~~~i~G~NGsGKS~ll 41 (322)
T 1e69_A 26 VTAIVGPNGSGKSNII 41 (322)
T ss_dssp EEEEECCTTTCSTHHH
T ss_pred cEEEECCCCCcHHHHH
Confidence 5789999999999764
No 478
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=51.44 E-value=7.6 Score=32.78 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.6
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 27 ~~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCcHHHHHH
Confidence 35677889999999999764
No 479
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=51.17 E-value=18 Score=28.25 Aligned_cols=31 Identities=19% Similarity=0.348 Sum_probs=18.6
Q ss_pred EEeccCCCchHHHHHHHHHHHHHhcCCccEEEEe
Q 028887 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil 144 (202)
+..+..|.|||.............+. +++++
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~---~Vlli 53 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGK---KVGIL 53 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCC---eEEEE
Confidence 44578899999886654433333333 45553
No 480
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=51.08 E-value=7.5 Score=30.61 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.5
Q ss_pred CCcEEEeccCCCchHHHHH
Q 028887 107 SRDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 107 g~~~l~~a~TGsGKT~~~l 125 (202)
...+.+.|++|||||...-
T Consensus 9 ~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468899999999998754
No 481
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=51.08 E-value=18 Score=27.83 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=19.5
Q ss_pred EEeccCCCchHHHHHHHHHHHHHhcCCccEEEEe
Q 028887 111 ILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 111 l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil 144 (202)
+..+..|+|||...+.........+. +++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~---~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGK---KTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCC---cEEEE
Confidence 44678889999886655444334444 56664
No 482
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=51.07 E-value=6.7 Score=31.37 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.1
Q ss_pred cEEEeccCCCchHHHH
Q 028887 109 DCILHAQTGSGKTLTY 124 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~ 124 (202)
.+.+.|++|+|||...
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999653
No 483
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=51.02 E-value=6.7 Score=36.68 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=17.9
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVN 133 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~ 133 (202)
.++++.|++|+|||... -.+...+.
T Consensus 192 ~~vlL~G~pG~GKT~la-~~la~~l~ 216 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIV-EGLAQRIV 216 (854)
T ss_dssp CCCEEEECTTSCHHHHH-HHHHHHHH
T ss_pred CceEEEcCCCCCHHHHH-HHHHHHHh
Confidence 57999999999999754 33334443
No 484
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=50.97 E-value=7.6 Score=30.11 Aligned_cols=21 Identities=14% Similarity=0.216 Sum_probs=17.3
Q ss_pred cCCcEEEeccCCCchHHHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~l~ 126 (202)
.|.-+++.|+.|+|||...-.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~ 24 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNI 24 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 477899999999999976533
No 485
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=50.90 E-value=15 Score=27.07 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=15.0
Q ss_pred EeccCCCchHHHHHHHHHHHHHhc
Q 028887 112 LHAQTGSGKTLTYLLLIFSLVNAQ 135 (202)
Q Consensus 112 ~~a~TGsGKT~~~l~~~l~~l~~~ 135 (202)
..+..|+|||.............+
T Consensus 7 ~s~kgG~GKTt~a~~la~~la~~g 30 (206)
T 4dzz_A 7 LNPKGGSGKTTAVINIATALSRSG 30 (206)
T ss_dssp CCSSTTSSHHHHHHHHHHHHHHTT
T ss_pred EeCCCCccHHHHHHHHHHHHHHCC
Confidence 346788999988655444433333
No 486
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=50.73 E-value=7.9 Score=32.70 Aligned_cols=20 Identities=30% Similarity=0.321 Sum_probs=16.4
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 35 ~~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCChHHHHH
Confidence 35677889999999999754
No 487
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=50.69 E-value=9.3 Score=36.64 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=24.6
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~ 124 (202)
+.+.+=..|+..++. ...+|+.|.+|+|||++.
T Consensus 128 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 163 (995)
T 2ycu_A 128 HVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENT 163 (995)
T ss_dssp CHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHH
T ss_pred hHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhH
Confidence 445666677766653 346999999999999984
No 488
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=50.53 E-value=7.3 Score=33.19 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=14.8
Q ss_pred CcEEEeccCCCchHHHHH
Q 028887 108 RDCILHAQTGSGKTLTYL 125 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l 125 (202)
.-++++|++|||||...-
T Consensus 259 ~lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 348899999999998754
No 489
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=50.53 E-value=9.2 Score=36.99 Aligned_cols=33 Identities=21% Similarity=0.332 Sum_probs=24.7
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~ 124 (202)
+.+.+=..|+..++. ...+|+.|.+|+|||++.
T Consensus 138 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~ 173 (1080)
T 2dfs_A 138 HIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSA 173 (1080)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchH
Confidence 445666777766653 346999999999999984
No 490
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=50.51 E-value=6.2 Score=30.87 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=15.2
Q ss_pred HHcCCcEEEeccCCCchHHHHHH
Q 028887 104 LFSSRDCILHAQTGSGKTLTYLL 126 (202)
Q Consensus 104 i~~g~~~l~~a~TGsGKT~~~l~ 126 (202)
+..|.-+++.|+.|+|||...-.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~ 44 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQW 44 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHH
Confidence 34678899999999999977543
No 491
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=50.43 E-value=8.1 Score=32.83 Aligned_cols=20 Identities=15% Similarity=0.280 Sum_probs=16.3
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 27 ~~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEcCCCchHHHHH
Confidence 35677889999999999753
No 492
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=50.28 E-value=9.1 Score=36.75 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=27.6
Q ss_pred CCcHHHHHHHHhHHc---CCcEEEeccCCCchHHHH--HHHHHHHHH
Q 028887 92 LPTDIQREALPVLFS---SRDCILHAQTGSGKTLTY--LLLIFSLVN 133 (202)
Q Consensus 92 ~~t~~Q~~~i~~i~~---g~~~l~~a~TGsGKT~~~--l~~~l~~l~ 133 (202)
+.+.+=..|+..++. ...+|+.|.+|+|||++. ++-.+..+.
T Consensus 154 HifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~ 200 (1010)
T 1g8x_A 154 HIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVA 200 (1010)
T ss_dssp CHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhc
Confidence 335566667766643 346999999999999984 333344443
No 493
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=50.28 E-value=15 Score=28.24 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=14.8
Q ss_pred cEEEeccCCCchHHHHHHH
Q 028887 109 DCILHAQTGSGKTLTYLLL 127 (202)
Q Consensus 109 ~~l~~a~TGsGKT~~~l~~ 127 (202)
-+++.+..|+|||....--
T Consensus 16 i~~~~GkgGvGKTTl~~~L 34 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEF 34 (262)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHH
Confidence 4788899999999765443
No 494
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=50.23 E-value=62 Score=26.27 Aligned_cols=45 Identities=13% Similarity=0.061 Sum_probs=32.0
Q ss_pred cEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHHH-HHHHHh
Q 028887 139 VQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRHK-SWLKVL 196 (202)
Q Consensus 139 ~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~l~~l 196 (202)
.++||.+++++-+..+.+.+++.+.. +..+||.....++ +.++.+
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~~~-------------~~~~~~~~~~~~r~~~~~~f 304 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLGYS-------------CYYSHARMKQQERNKVFHEF 304 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTCC-------------EEEECTTSCHHHHHHHHHHH
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCCC-------------eEEecCCCCHHHHHHHHHHH
Confidence 38999999999999999998876432 5567776655443 444443
No 495
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=50.17 E-value=7.9 Score=30.07 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=15.0
Q ss_pred cCCcEEEeccCCCchHHHH
Q 028887 106 SSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 106 ~g~~~l~~a~TGsGKT~~~ 124 (202)
..+-+++.||+||||+...
T Consensus 28 k~kiI~llGpPGsGKgTqa 46 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQC 46 (217)
T ss_dssp SCEEEEEECCTTCCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3456788999999998654
No 496
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=50.12 E-value=8.6 Score=33.42 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=17.4
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.|++|+|||...
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 47889999999999999764
No 497
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=50.05 E-value=59 Score=26.12 Aligned_cols=47 Identities=11% Similarity=0.182 Sum_probs=32.7
Q ss_pred ccEEEEecCCHHhHHHHHHHHHHhhcCCCCcccccccceEEEEEeCCccHHH-HHHHHHhc
Q 028887 138 AVQAVIVVPTRELGMQVTKVARVLAAKPLDTDLEHKLCTVMALLDGGMLRRH-KSWLKVLY 197 (202)
Q Consensus 138 ~~~~Lil~Ptr~La~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~l~~l~ 197 (202)
..++||.+++++-+..+.+.++..... +..+||.....+ .+.++.++
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~~~~-------------~~~~~~~~~~~~r~~~~~~f~ 290 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSEGHE-------------VSILHGDLQTQERDRLIDDFR 290 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCC-------------CEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCc-------------EEEeCCCCCHHHHHHHHHHHH
Confidence 348999999999999999988876432 556777655544 34444443
No 498
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=50.01 E-value=18 Score=28.84 Aligned_cols=34 Identities=15% Similarity=0.132 Sum_probs=21.5
Q ss_pred CcEEEeccCCCchHHHHHHHHHHHHHhcCCccEEEEe
Q 028887 108 RDCILHAQTGSGKTLTYLLLIFSLVNAQRSAVQAVIV 144 (202)
Q Consensus 108 ~~~l~~a~TGsGKT~~~l~~~l~~l~~~~~~~~~Lil 144 (202)
+-+.+.+.-|+|||...+.........++ +++++
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~---~Vlli 75 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGK---RVLQI 75 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTC---CEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCC---eEEEE
Confidence 44556689999999886654444334444 55555
No 499
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=49.99 E-value=15 Score=30.54 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=22.2
Q ss_pred EEEeccCCCchHHHHHHHHHHHH--HhcCCccEEEEec
Q 028887 110 CILHAQTGSGKTLTYLLLIFSLV--NAQRSAVQAVIVV 145 (202)
Q Consensus 110 ~l~~a~TGsGKT~~~l~~~l~~l--~~~~~~~~~Lil~ 145 (202)
+++.+..|.|||.+..-...... ..++ +++++-
T Consensus 21 ~v~sgKGGvGKTTvaanLA~~lA~~~~G~---rVLLvD 55 (354)
T 2woj_A 21 IFVGGKGGVGKTTSSCSIAIQMALSQPNK---QFLLIS 55 (354)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHHCTTS---CEEEEE
T ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhcCCC---eEEEEE
Confidence 56778999999988766554444 3444 566654
No 500
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=49.85 E-value=6.5 Score=32.89 Aligned_cols=20 Identities=35% Similarity=0.403 Sum_probs=16.5
Q ss_pred HcCCcEEEeccCCCchHHHH
Q 028887 105 FSSRDCILHAQTGSGKTLTY 124 (202)
Q Consensus 105 ~~g~~~l~~a~TGsGKT~~~ 124 (202)
..|.-+.+.||+|+|||...
T Consensus 24 ~~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHH
Confidence 35677889999999999764
Done!