BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028888
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23715|PSA3_ARATH Proteasome subunit alpha type-3 OS=Arabidopsis thaliana GN=PAG1
PE=1 SV=2
Length = 249
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/202 (88%), Positives = 194/202 (96%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
MGVEKLIASKMMLPGSNRRIHSVHRH+GMAVAGLAADGRQIV RAKSEA +YESVYG+ +
Sbjct: 48 MGVEKLIASKMMLPGSNRRIHSVHRHAGMAVAGLAADGRQIVARAKSEARSYESVYGDAV 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
PVKEL++RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK
Sbjct: 108 PVKELSERVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 167
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
G+QAAKTEIEKL LSEMTC++GVIEVAKIIY +HDEAKDKAFELEMSW+C+ES R+HQKV
Sbjct: 168 GKQAAKTEIEKLNLSEMTCKEGVIEVAKIIYKLHDEAKDKAFELEMSWICEESKREHQKV 227
Query: 181 PDELLEEAKAAARAALEEMDAD 202
PD+LLEEAK AA+ ALEEMDAD
Sbjct: 228 PDDLLEEAKTAAKTALEEMDAD 249
>sp|O24362|PSA3_SPIOL Proteasome subunit alpha type-3 OS=Spinacia oleracea GN=PAG1 PE=2
SV=1
Length = 249
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/202 (91%), Positives = 194/202 (96%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+GVEKLI SKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIV RAKSEATNYESVYGE +
Sbjct: 48 LGVEKLIQSKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVARAKSEATNYESVYGEAV 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
PVKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYM+EPSGISYRYFGAAIGK
Sbjct: 108 PVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMVEPSGISYRYFGAAIGK 167
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
G+QAAKTEIEKLKLSEMTCR+G+IEVAKIIY VHDEAKDKAFELEMSW+CDES R+HQKV
Sbjct: 168 GKQAAKTEIEKLKLSEMTCREGIIEVAKIIYKVHDEAKDKAFELEMSWICDESKREHQKV 227
Query: 181 PDELLEEAKAAARAALEEMDAD 202
PD LL+EAKAAA AALEEMDAD
Sbjct: 228 PDNLLQEAKAAATAALEEMDAD 249
>sp|Q9LSU0|PSA3_ORYSJ Proteasome subunit alpha type-3 OS=Oryza sativa subsp. japonica
GN=PAG1 PE=2 SV=1
Length = 249
Score = 379 bits (973), Expect = e-105, Method: Compositional matrix adjust.
Identities = 176/202 (87%), Positives = 193/202 (95%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+GVEKL+ SKMML GSNRRIHSVH HSG+AVAGLAADGRQIV+RAKSEA +YE VYGEPI
Sbjct: 48 LGVEKLVTSKMMLEGSNRRIHSVHWHSGLAVAGLAADGRQIVSRAKSEAASYEKVYGEPI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
VKELA RVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSG+SY+YFGAA+GK
Sbjct: 108 SVKELADRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGVSYKYFGAALGK 167
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
GRQAAKTEIEKLKLSE+TCR+G++EVAKIIYGVHDEAKDKAFELE+SW+CDESNRQHQKV
Sbjct: 168 GRQAAKTEIEKLKLSELTCREGIVEVAKIIYGVHDEAKDKAFELELSWICDESNRQHQKV 227
Query: 181 PDELLEEAKAAARAALEEMDAD 202
P +LLE+AK AA+AALEEMDAD
Sbjct: 228 PADLLEQAKVAAQAALEEMDAD 249
>sp|Q27563|PSA3_DICDI Proteasome subunit alpha type-3 OS=Dictyostelium discoideum
GN=psmA3 PE=2 SV=2
Length = 248
Score = 261 bits (668), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 115/200 (57%), Positives = 156/200 (78%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+GVEKL+ SKM+ GSNRR+H + H G+A+AG AD RQ++TRA+SEA NY+S YG+PI
Sbjct: 48 LGVEKLVPSKMLCSGSNRRVHHIDTHVGVAIAGFLADARQLITRARSEAKNYKSTYGQPI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+K L+QR+ASY H+ TLY +RPFGC + + G D+ GPQL+++EPSG YFGA++GK
Sbjct: 108 PIKVLSQRIASYNHMHTLYGSVRPFGCSIAITGIDQYGPQLFLVEPSGSCVGYFGASLGK 167
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
G+QAAK E+EK+K SEMTCR+ + EV++IIY VHDE KDK FELE+ W+ E+N HQ V
Sbjct: 168 GKQAAKNELEKIKFSEMTCREAIKEVSRIIYSVHDEVKDKDFELELGWISTETNNVHQIV 227
Query: 181 PDELLEEAKAAARAALEEMD 200
P EL +EA+A A+ +LE+ +
Sbjct: 228 PKELHDEAEAYAKQSLEDAN 247
>sp|P90513|PSA3_ACACA Proteasome subunit alpha type-3 (Fragment) OS=Acanthamoeba
castellanii PE=2 SV=1
Length = 252
Score = 258 bits (659), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 121/196 (61%), Positives = 156/196 (79%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEKL+ SKM++P +NRRIH+V RH G+A++GL ADGRQ+V+R ++EAT+Y YG I
Sbjct: 46 LAVEKLLVSKMLVPNTNRRIHTVDRHCGLAMSGLVADGRQLVSRGRAEATSYREFYGTDI 105
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
K L +R++++V L +LY +RPFG VILG D++GPQLYMIEPSGIS+ YFG AIGK
Sbjct: 106 SGKVLNERLSNFVQLYSLYGSVRPFGTSVILGCVDKNGPQLYMIEPSGISWGYFGVAIGK 165
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
G +AAKTEIEKLKLSEMT R+ + E AKIIY VHD+AKDKAFELE+SWVC+E+ H+ V
Sbjct: 166 GARAAKTEIEKLKLSEMTAREAIKEAAKIIYSVHDDAKDKAFELELSWVCEETGNLHKFV 225
Query: 181 PDELLEEAKAAARAAL 196
P +LLEEA+ A+ AL
Sbjct: 226 PKDLLEEAEKYAKQAL 241
>sp|P25788|PSA3_HUMAN Proteasome subunit alpha type-3 OS=Homo sapiens GN=PSMA3 PE=1 SV=2
Length = 255
Score = 239 bits (611), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 120/201 (59%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
GVEKL+ SK+ GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G I
Sbjct: 48 FGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIG 119
P+K LA RVA YVH TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIG
Sbjct: 108 PLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIG 167
Query: 120 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQK 179
K RQAAKTEIEKL++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + +N +H+
Sbjct: 168 KARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEI 227
Query: 180 VPDELLEEAKAAARAALEEMD 200
VP ++ EEA+ A+ +L+E D
Sbjct: 228 VPKDIREEAEKYAKESLKEED 248
>sp|Q58DU5|PSA3_BOVIN Proteasome subunit alpha type-3 OS=Bos taurus GN=PSMA3 PE=1 SV=3
Length = 255
Score = 239 bits (611), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 120/201 (59%), Positives = 149/201 (74%), Gaps = 1/201 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
GVEKL+ SK+ GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G I
Sbjct: 48 FGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIG 119
P+K LA RVA YVH TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIG
Sbjct: 108 PLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIG 167
Query: 120 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQK 179
K RQAAKTEIEKL++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + +N +H+
Sbjct: 168 KARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGEITNGRHEI 227
Query: 180 VPDELLEEAKAAARAALEEMD 200
VP ++ EEA+ A+ +L+E D
Sbjct: 228 VPKDVREEAEKYAKESLKEED 248
>sp|P18422|PSA3_RAT Proteasome subunit alpha type-3 OS=Rattus norvegicus GN=Psma3 PE=1
SV=3
Length = 255
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/201 (59%), Positives = 148/201 (73%), Gaps = 1/201 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
GVEKL+ SK+ GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G I
Sbjct: 48 FGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIG 119
P+K LA RVA YVH TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIG
Sbjct: 108 PLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIG 167
Query: 120 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQK 179
K RQAAKTEIEKL++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + + +H+
Sbjct: 168 KARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEI 227
Query: 180 VPDELLEEAKAAARAALEEMD 200
VP ++ EEA+ A+ +L+E D
Sbjct: 228 VPKDVREEAEKYAKESLKEED 248
>sp|O70435|PSA3_MOUSE Proteasome subunit alpha type-3 OS=Mus musculus GN=Psma3 PE=1 SV=3
Length = 255
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 119/201 (59%), Positives = 148/201 (73%), Gaps = 1/201 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
GVEKL+ SK+ GSN+R+ +V RH GMAVAGL AD R + A+ EA+N+ S +G I
Sbjct: 48 FGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIG 119
P+K LA RVA YVH TLY +RPFGC +LG Y DG QLYMI+PSG+SY Y+G AIG
Sbjct: 108 PLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSANDGAQLYMIDPSGVSYGYWGCAIG 167
Query: 120 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQK 179
K RQAAKTEIEKL++ EMTCR V EVAKIIY VHDE KDKAFELE+SWV + + +H+
Sbjct: 168 KARQAAKTEIEKLQMKEMTCRDVVKEVAKIIYIVHDEVKDKAFELELSWVGELTKGRHEI 227
Query: 180 VPDELLEEAKAAARAALEEMD 200
VP ++ EEA+ A+ +L+E D
Sbjct: 228 VPKDIREEAEKYAKESLKEED 248
>sp|O59770|PSA7_SCHPO Probable proteasome subunit alpha type-7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pre10 PE=1 SV=1
Length = 253
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 126/193 (65%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ +EK++ SK++ P N RI SV RH G+A G DG+ IV RA+ EAT++ YG PI
Sbjct: 47 LALEKVVTSKLLKPRVNNRIGSVDRHIGIATTGFIPDGQHIVKRARDEATSWRDNYGSPI 106
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P +A R+ +YV L T Y +RPFG + YD +GP LYM+EP+G+ + Y GAA GK
Sbjct: 107 PGTVIADRLGNYVQLFTCYSSVRPFGVMSFVATYDSEGPHLYMVEPNGVYWGYNGAAAGK 166
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
GRQ A+ E+EKL S + + V E A+I+Y HDE +K E+EM+WV E+N H V
Sbjct: 167 GRQVARNELEKLNFSSLKMKDAVKEAARILYATHDEENNKEHEIEMTWVGVETNGIHTPV 226
Query: 181 PDELLEEAKAAAR 193
PDELL+EA+A AR
Sbjct: 227 PDELLQEAEAYAR 239
>sp|Q9V5C6|PSA3_DROME Proteasome subunit alpha type-3 OS=Drosophila melanogaster
GN=Prosalpha7 PE=1 SV=1
Length = 253
Score = 176 bits (447), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 96/203 (47%), Positives = 126/203 (62%), Gaps = 2/203 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK+I SK+ P + RI ++ ++ GMAVAGL ADG + A+ EA NY + + I
Sbjct: 48 LAVEKIITSKLYEPDAGGRIFTIEKNIGMAVAGLVADGNFVADIARQEAANYRQQFEQAI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIG 119
P+K L RVA YVH TLY +RPFG +IL +D +GPQLY IEPSG S+ YF A G
Sbjct: 108 PLKHLCHRVAGYVHAYTLYSAVRPFGLSIILASWDEVEGPQLYKIEPSGSSFGYFACASG 167
Query: 120 KGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQK 179
K +Q AKTE+EKLK+ +M + V +IIY VHDE KDK F EM V + H
Sbjct: 168 KAKQLAKTEMEKLKM-DMRTDELVESAGEIIYKVHDELKDKDFRFEMGLVGRVTGGLHLI 226
Query: 180 VPDELLEEAKAAARAALEEMDAD 202
P EL E+A+ A AA ++ D+D
Sbjct: 227 NPSELTEKARKAGDAANKDEDSD 249
>sp|P21242|PSA7_YEAST Probable proteasome subunit alpha type-7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PRE10 PE=1
SV=2
Length = 288
Score = 174 bits (442), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 89/192 (46%), Positives = 121/192 (63%), Gaps = 4/192 (2%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
VEKLI SK+++P N +I V RH G +GL DGR +V R + EA +++ +Y PI
Sbjct: 48 FAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPI 107
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ A R+ YV TLY +RPFG I GG D++G LYM+EPSG + Y GAA GK
Sbjct: 108 PIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGK 167
Query: 121 GRQAAKTEIEKL---KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC-DESNRQ 176
GRQ+AK E+EKL ++ R+ V + AKIIY H++ K+K FELE+SW E+N
Sbjct: 168 GRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGL 227
Query: 177 HQKVPDELLEEA 188
H+ V +LL+EA
Sbjct: 228 HKFVKGDLLQEA 239
>sp|Q09583|PSA3_CAEEL Proteasome subunit alpha type-3 OS=Caenorhabditis elegans GN=pas-7
PE=1 SV=3
Length = 250
Score = 157 bits (397), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 84/200 (42%), Positives = 127/200 (63%), Gaps = 2/200 (1%)
Query: 4 EKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVK 63
+KLI+SK+ +N R+ +V+ + G+AVAG DG + A EA + Y EP+P++
Sbjct: 51 DKLISSKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKNYAYGEAMKWLKDYREPMPIQ 110
Query: 64 ELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGR 122
+A VA Y+H+ TL RPFG G +++ G +L+++EPSG++Y Y A+GK R
Sbjct: 111 NIANSVAEYIHIHTLGI-SRPFGAGAFFMSWNKQTGGRLFLVEPSGLNYEYKAWAVGKHR 169
Query: 123 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPD 182
QAAK EIEKLK+ E+ Q V E A+II V DE KDK ++EM WV +++N ++++VP
Sbjct: 170 QAAKAEIEKLKIEELDVNQLVKEAARIIMVVRDENKDKNVQIEMGWVGEQTNGKYEEVPS 229
Query: 183 ELLEEAKAAARAALEEMDAD 202
E++ A+ A A L+E D D
Sbjct: 230 EVVTAAEEWAIAKLDEDDMD 249
>sp|Q8TYB7|PSA_METKA Proteasome subunit alpha OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=psmA PE=3 SV=1
Length = 246
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/187 (32%), Positives = 100/187 (53%), Gaps = 2/187 (1%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+GV+K + SK++ P S +++ + H G A AGL AD R +V RA+ EA Y YGEPI
Sbjct: 50 LGVDKRVTSKLIEPESIEKVYQIDTHIGAATAGLVADARVLVERARIEAQTYRYTYGEPI 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
V L + + + T + +RPFG +++ G D G +L+ +PSG + AIG+
Sbjct: 110 DVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTKGCRLFETDPSGALTEHKATAIGE 169
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQ-HQK 179
GRQ A E+ +MT ++ + + +Y E + A LE++ V + R+ +K
Sbjct: 170 GRQEALDVFEEEYREDMTLQEAIELAVRALYEASRE-ETTADNLEIAVVDKQGFRKLERK 228
Query: 180 VPDELLE 186
+E+ E
Sbjct: 229 KIEEMFE 235
>sp|O26782|PSA_METTH Proteasome subunit alpha OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=psmA PE=3 SV=1
Length = 248
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 97/181 (53%), Gaps = 2/181 (1%)
Query: 3 VEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 62
V+K SK++ P S +I + H G A +GL AD R I+ +A+ EA Y EPI V
Sbjct: 51 VDKRPTSKLVEPKSIEKIFQIDEHIGAATSGLVADARAIIEKARLEAQINRITYNEPIRV 110
Query: 63 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGR 122
+ LA+++ + T + +RPFG +I+GG + G +L+ +PSG Y AIG GR
Sbjct: 111 ESLAKKICDMKQMYTQHGGVRPFGTALIIGGVNGRGCRLFETDPSGALIEYKATAIGAGR 170
Query: 123 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPD 182
AA E EK +M Q + +Y E K +E++ V + ++++++++PD
Sbjct: 171 PAAMEEFEKKYSDDMNLNQAIELALDAVYEAT-EGKTTPESVEIA-VIEAADKKYRRLPD 228
Query: 183 E 183
+
Sbjct: 229 D 229
>sp|P52428|PSA1_ORYSJ Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica
GN=PAF1 PE=2 SV=1
Length = 270
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 68/119 (57%)
Query: 13 LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASY 72
L R++ V H+G+A+AGL ADGR + +SE N+ VY P+PV LA R+A
Sbjct: 56 LSSHQRKVFRVADHAGVALAGLTADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADK 115
Query: 73 VHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 131
+CT W RP+G G+++ G D G LY PSG + Y AIG QAAKT +E+
Sbjct: 116 AQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLER 174
>sp|Q9UT97|PSA5_SCHPO Probable proteasome subunit alpha type-5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=pup2 PE=1 SV=1
Length = 247
Score = 97.8 bits (242), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 18/171 (10%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+GVEK + S +M S ++ + H G A++GL AD R I+ A+ + N+ Y EP
Sbjct: 48 LGVEKRLTSPLMESHSVEKLFEIDSHIGCAISGLTADARTIIEHARVQTQNHRFTYDEPQ 107
Query: 61 PVKELAQRVASYVHLCTLYWWL------------RPFGCGVILGGYDRDGPQLYMIEPSG 108
++ Q + C L RPFG +++ G D GPQLY EPSG
Sbjct: 108 GIESTTQSI------CDLALRFGEGEDGEERIMSRPFGVALLIAGIDEHGPQLYHSEPSG 161
Query: 109 ISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159
+RY AIG G + AK+E+ K +MT + + + K++ V +E D
Sbjct: 162 TYFRYEAKAIGSGSEPAKSELVKEFHKDMTLEEAEVLILKVLRQVMEEKLD 212
>sp|C6A459|PSA_THESM Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=psmA PE=3 SV=1
Length = 260
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 100/191 (52%), Gaps = 6/191 (3%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK + SK++ P S +I + H A +G+ AD R +V RA+ EA Y YGEP+
Sbjct: 50 LAVEKRVTSKLIEPESYEKIFQIDDHIAAASSGIIADARVLVDRARLEAQIYRLTYGEPV 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ L +++ + T Y +RPFG +++ G + + P+L+ +PSG + + AIG
Sbjct: 110 PLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGS 168
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
GR A E+ EMT + + + + +E ++ +E++ + + + +
Sbjct: 169 GRNTAMAIFEEKYRDEMTLEEAIKLAVLALSKIMEEPSPES--IEVAVISVKEKKFKKIT 226
Query: 181 PDEL---LEEA 188
P+E+ LEEA
Sbjct: 227 PEEVAKCLEEA 237
>sp|O23712|PSA1B_ARATH Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2
PE=1 SV=2
Length = 277
Score = 97.4 bits (241), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%)
Query: 13 LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASY 72
L R+I V H G+A+AGL ADGR + +SE+ N+ Y P+PV L +A
Sbjct: 56 LSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADK 115
Query: 73 VHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 131
+CT W RP+G G+++GG D G LY PSG + Y AIG QAAKT +E+
Sbjct: 116 AQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174
>sp|P34066|PSA1A_ARATH Proteasome subunit alpha type-1-A OS=Arabidopsis thaliana GN=PAF1
PE=1 SV=3
Length = 278
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 66/119 (55%)
Query: 13 LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASY 72
L R+I V H G+A+AGL ADGR + +SE+ N+ Y P+PV L +A
Sbjct: 56 LSSHQRKIFKVDDHIGVAIAGLTADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADK 115
Query: 73 VHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 131
+CT W RP+G G+++GG D G LY PSG + Y AIG QAAKT +E+
Sbjct: 116 AQVCTQRSWKRPYGVGLLVGGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLER 174
>sp|Q94561|PSA5_ENTHI Proteasome subunit alpha type-5 OS=Entamoeba histolytica PE=3 SV=2
Length = 247
Score = 94.0 bits (232), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/184 (30%), Positives = 96/184 (52%), Gaps = 14/184 (7%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I+S +ML S +I + H G AV+GL AD R ++ A+ EA N+ +Y EPI
Sbjct: 48 LAVEKRISSPLMLGSSIEKIIEIDDHIGAAVSGLTADARTLIDNARLEAQNHRFMYDEPI 107
Query: 61 PVKELAQRVASYVHLCTLYW---------WLRPFGCGVILGGYDRDGPQLYMIEPSGISY 111
V+ +AQ ++ +L + RPFG +++ G D GP+L+ +PSG+
Sbjct: 108 NVEVVAQAISD----LSLRFGEGSRKKKVMSRPFGVALLIAGVDETGPRLFQTDPSGMFI 163
Query: 112 RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCD 171
++ A G G +AA++ + + MT R+ I + V +E K + +E++ V
Sbjct: 164 EFYAKATGAGTEAAQSILHEKYNKSMTLREAEILALSTLKQVMEE-KLNSKNVEVALVTV 222
Query: 172 ESNR 175
E +
Sbjct: 223 EKKK 226
>sp|Q8U0L6|PSA_PYRFU Proteasome subunit alpha OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=psmA PE=3 SV=1
Length = 260
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 48/143 (33%), Positives = 75/143 (52%), Gaps = 1/143 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I S+++ P S +I + H A +G+ AD R +V RA+ EA Y YGEP
Sbjct: 50 LAVEKRITSRLIEPDSYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIYRLTYGEPA 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
PV + +++ + T Y +RPFG +++ G + D P+LY +PSG + + AIG
Sbjct: 110 PVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGIN-DRPELYETDPSGAYFAWKAVAIGS 168
Query: 121 GRQAAKTEIEKLKLSEMTCRQGV 143
GR A E+ +M +
Sbjct: 169 GRNTAMAIFEEKYRDDMNLEDAI 191
>sp|B6YSH9|PSA_THEON Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1)
GN=psmA PE=3 SV=1
Length = 260
Score = 94.0 bits (232), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I SK++ P S +I + H A +G+ AD R +V RA+ EA Y YGEP+
Sbjct: 50 LAVEKRITSKLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQVYRLTYGEPV 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ L +++ T Y +RPFG +++ G + D P+LY +PSG + + AIG
Sbjct: 110 PLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFEWRAVAIGS 168
Query: 121 GRQAA 125
GR A
Sbjct: 169 GRNTA 173
>sp|Q9V122|PSA_PYRAB Proteasome subunit alpha OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=psmA PE=3 SV=1
Length = 260
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 76/143 (53%), Gaps = 1/143 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I S+++ P S +I + H A +G+ AD R +V RA+ EA + YGEP
Sbjct: 50 LAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPA 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ + +++ + T Y +RPFG +++ G + D P+LY +PSG + + AIG
Sbjct: 110 PLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-DKPELYETDPSGAYFAWKAVAIGS 168
Query: 121 GRQAAKTEIEKLKLSEMTCRQGV 143
GR A E +MT + +
Sbjct: 169 GRNTAMAIFEDKYRDDMTLDEAI 191
>sp|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha type-5 OS=Glycine max GN=PAE1 PE=2 SV=1
Length = 237
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 83/165 (50%), Gaps = 15/165 (9%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I S ++ P S +I + H G A++GL AD R +V A+ E N+ YGEP+
Sbjct: 48 LAVEKRITSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 107
Query: 61 PVKELAQRVASYVHLCTLYWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISY 111
V+ Q LC L RPFG +++ G+D +GP LY +PSG +
Sbjct: 108 TVESTTQA------LCDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFW 161
Query: 112 RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156
+ G AIG G + A + +++ ++T ++ I+ V +E
Sbjct: 162 QCNGKAIGSGSEGADSSLQEQFNKDLTLQEAETIALSILKQVMEE 206
>sp|O14250|PSA6_SCHPO Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G10.04c PE=3
SV=1
Length = 272
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 68/119 (57%)
Query: 13 LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASY 72
L +++ + H G+A+AGLA D R + K EA + ++++ PIPV+ L +VA
Sbjct: 56 LSSYQKKLIRIDDHIGIAIAGLAPDARVLSNYMKQEALSSKTLFTRPIPVRRLMSKVAEK 115
Query: 73 VHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 131
+ T + RP+G G ++ GYD GP L +PSG+ Y G ++G Q+A+T IE+
Sbjct: 116 AQINTQEYGRRPYGVGFLVIGYDESGPHLLEFQPSGLVLEYLGTSMGSRSQSARTYIER 174
>sp|C5A2C2|PSA_THEGJ Proteasome subunit alpha OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=psmA PE=3 SV=1
Length = 260
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 80/147 (54%), Gaps = 2/147 (1%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I S+++ P S +I + H A +G+ AD R +V RA+ EA Y YGEP+
Sbjct: 50 LAVEKRITSRLIEPSSYEKIFQIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPV 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ L +++ T Y +RPFG +++ G + + P+LY +PSG + + AIG
Sbjct: 110 PLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-EKPELYETDPSGAYFEWKAVAIGS 168
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVA 147
GR A E+ S+ +G I++A
Sbjct: 169 GRNTAMAIFEE-HYSDDIDMEGAIKLA 194
>sp|P32379|PSA5_YEAST Proteasome subunit alpha type-5 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP2 PE=1 SV=2
Length = 260
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 86/173 (49%), Gaps = 19/173 (10%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+GVEK S ++ S +I + RH G A++GL AD R ++ A++ A + Y E I
Sbjct: 48 LGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDI 107
Query: 61 PVKELAQRVASYVHLCTLYWWL------------RPFGCGVILGGYD-RDGPQLYMIEPS 107
V+ L Q V C L RPFG +++ G+D DG QL+ EPS
Sbjct: 108 NVESLTQSV------CDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPS 161
Query: 108 GISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160
G YRY AIG G + A+ E+ S +T ++ + V KI+ V +E D+
Sbjct: 162 GTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVMEEKLDE 214
>sp|Q469M6|PSA_METBF Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=psmA PE=3 SV=1
Length = 249
Score = 90.9 bits (224), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 11/187 (5%)
Query: 3 VEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 62
V+K I S+++ S +I + H G A +GL AD R +V RA+ EA Y EPI V
Sbjct: 51 VDKRITSRLVEAESIEKIFQIDDHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGV 110
Query: 63 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGR 122
+ +++++ + T Y +RP+G +++ G D + P+L+ +PSG Y AIG GR
Sbjct: 111 EVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNLPRLFETDPSGALLEYKATAIGAGR 170
Query: 123 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVH-----DEAKDKAFELEMSWVCDESNRQH 177
A +++ E RQ + A I+ G+ E K A LE+ V + +
Sbjct: 171 NAV------VEVFEAEYRQDMNMDAAILLGMDALYRAAEGKFDASTLEVGIVSLQDKKFR 224
Query: 178 QKVPDEL 184
+ VP+E+
Sbjct: 225 KLVPEEV 231
>sp|O29760|PSA_ARCFU Proteasome subunit alpha OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=psmA PE=1 SV=1
Length = 246
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 93/181 (51%), Gaps = 2/181 (1%)
Query: 4 EKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVK 63
+K + SK++ + +I+ + H A +GL AD R ++ RA+ EA Y EPI VK
Sbjct: 51 DKRVGSKLLEADTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDEPITVK 110
Query: 64 ELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQ 123
ELA+++ + T Y +RPFG +++ G D + P+LY +PSG Y AIG GR
Sbjct: 111 ELAKKICDFKQQYTQYGGVRPFGVSLLIAGVD-EVPKLYETDPSGALLEYKATAIGMGRN 169
Query: 124 AAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDE 183
A EK +++ ++ + + G+ E++ +E+ +V + + P+E
Sbjct: 170 AVTEFFEKEYRDDLSFDDAMV-LGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEE 228
Query: 184 L 184
L
Sbjct: 229 L 229
>sp|Q5JIU9|PSA_PYRKO Proteasome subunit alpha OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=psmA PE=3 SV=1
Length = 260
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I SK++ P S +I + H A +G+ AD R +V RA+ EA Y YGEP+
Sbjct: 50 LAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPV 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ L +++ T Y +RPFG +++ G + + P+L+ +PSG + + AIG
Sbjct: 110 PLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGS 168
Query: 121 GRQAA 125
GR A
Sbjct: 169 GRNTA 173
>sp|O24733|PSA_THEK1 Proteasome subunit alpha OS=Thermococcus sp. (strain KS-1) GN=psmA
PE=3 SV=1
Length = 260
Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I SK++ P S +I + H A +G+ AD R +V RA+ EA Y YGEP+
Sbjct: 50 LAVEKRITSKLIEPSSYEKIFLIDDHIAAAPSGIIADARVLVDRARLEAQIYRLTYGEPV 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ L +++ T Y +RPFG +++ G + + P+L+ +PSG + + AIG
Sbjct: 110 PLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVN-EKPELFETDPSGAYFEWKAVAIGS 168
Query: 121 GRQAA 125
GR A
Sbjct: 169 GRNTA 173
>sp|O23708|PSA2A_ARATH Proteasome subunit alpha type-2-A OS=Arabidopsis thaliana GN=PAB1
PE=1 SV=1
Length = 235
Score = 90.1 bits (222), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 78/137 (56%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ EK + S ++ S ++I + + G+ +G+ D R +V +++ +A Y +Y EPI
Sbjct: 46 IATEKKLPSILVDEASVQKIQHLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPI 105
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
PV +L + A+ + T +RPFG +++ GYD GPQLY ++PSG + + +A+GK
Sbjct: 106 PVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGK 165
Query: 121 GRQAAKTEIEKLKLSEM 137
AKT +EK +M
Sbjct: 166 NVSNAKTFLEKRYTEDM 182
>sp|Q10KF0|PSA2_ORYSJ Proteasome subunit alpha type-2 OS=Oryza sativa subsp. japonica
GN=PAB1 PE=2 SV=1
Length = 235
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ EK + S ++ S ++I S+ + G+ +G+ D R +V +++ +A Y +Y E I
Sbjct: 46 IATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETI 105
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
PV +L + A+ + T +RPFG +++ GYD +GPQLY ++PSG + + +A+GK
Sbjct: 106 PVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGK 165
Query: 121 GRQAAKTEIEKLKLSEM 137
AKT +EK +M
Sbjct: 166 NVSNAKTFLEKRYTEDM 182
>sp|A2YVR7|PSA2_ORYSI Proteasome subunit alpha type-2 OS=Oryza sativa subsp. indica
GN=PAB1 PE=2 SV=2
Length = 235
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ EK + S ++ S ++I S+ + G+ +G+ D R +V +++ +A Y +Y E I
Sbjct: 46 IATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETI 105
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
PV +L + A+ + T +RPFG +++ GYD +GPQLY ++PSG + + +A+GK
Sbjct: 106 PVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGK 165
Query: 121 GRQAAKTEIEKLKLSEM 137
AKT +EK +M
Sbjct: 166 NVSNAKTFLEKRYTEDM 182
>sp|Q9LSU1|PSA5_ORYSJ Proteasome subunit alpha type-5 OS=Oryza sativa subsp. japonica
GN=PAE1 PE=2 SV=1
Length = 237
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK + S ++ P S +I + H G A++GL AD R +V A+ E N+ YGEP+
Sbjct: 48 LAVEKRVTSPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 107
Query: 61 PVKELAQRVASYVHLCTLYWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISY 111
V+ Q + C L RPFG +++ G+D +GP LY +PSG +
Sbjct: 108 TVESTTQAI------CDLALRFGEGDEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFW 161
Query: 112 RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156
+ AIG G + A + +++ E+T ++ I+ V +E
Sbjct: 162 QCNAKAIGSGSEGADSSLQEQYNKELTLQEAETIALSILKQVMEE 206
>sp|Q8L4A7|PSA2B_ARATH Proteasome subunit alpha type-2-B OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 235
Score = 89.7 bits (221), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 77/137 (56%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ EK + S ++ S ++I + + G +G+ D R +V +++ +A Y +Y EPI
Sbjct: 46 IATEKKLPSILVDEASVQKIQHLTPNIGTVYSGMGPDFRVLVRKSRKQAEQYLRLYKEPI 105
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
PV +L + A+ + T +RPFG +++ GYD GPQLY ++PSG + + +A+GK
Sbjct: 106 PVTQLVRETATVMQEFTQSGGVRPFGVSLLVAGYDDKGPQLYQVDPSGSYFSWKASAMGK 165
Query: 121 GRQAAKTEIEKLKLSEM 137
AKT +EK +M
Sbjct: 166 NVSNAKTFLEKRYTEDM 182
>sp|Q42134|PSA5B_ARATH Proteasome subunit alpha type-5-B OS=Arabidopsis thaliana GN=PAE2
PE=1 SV=2
Length = 237
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I S ++ P S +I + H G A++GL AD R +V A+ E N+ YGEP+
Sbjct: 48 LAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 107
Query: 61 PVKELAQRVASYVHLCTLYWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISY 111
V+ Q LC L RPFG +++ G+D +GP LY +PSG +
Sbjct: 108 TVESTTQA------LCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFW 161
Query: 112 RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156
+ AIG G + A + +++ ++T ++ I+ V +E
Sbjct: 162 QCNAKAIGSGSEGADSSLQEQFNKDITLQEAETIAVSILKQVMEE 206
>sp|P40301|PSA2_DROME Proteasome subunit alpha type-2 OS=Drosophila melanogaster
GN=Pros25 PE=1 SV=1
Length = 234
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 83/162 (51%), Gaps = 8/162 (4%)
Query: 21 HSVHR------HSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVH 74
HSVHR H GM +G+ D R +V +A+ A Y Y EPIPV +L QRVA+ +
Sbjct: 60 HSVHRVEMIYNHIGMVYSGMGPDYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQ 119
Query: 75 LCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKL 134
T +RPFG +++ G+D D P LY +PSG + + A+GK KT +EK +
Sbjct: 120 EYTQSGGVRPFGVSLLICGWDNDRPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEK-RY 178
Query: 135 SEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQ 176
SE + A + E K A +E+ +CD++ Q
Sbjct: 179 SEDLELDDAVHTAILTLKEGFEGKMTADNIEIG-ICDQNGFQ 219
>sp|O59219|PSA_PYRHO Proteasome subunit alpha OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=psmA PE=3 SV=1
Length = 260
Score = 89.4 bits (220), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 1/143 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I S+++ P S +I + H A +G+ AD R +V RA+ EA + YGEP
Sbjct: 50 LAVEKRITSRLIEPESYEKIFQIDDHIAAASSGIIADARVLVNRARLEAQIHRLTYGEPA 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
P+ + +++ + T Y +RPFG +++ G + + P+LY +PSG + + AIG
Sbjct: 110 PLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVN-EKPELYETDPSGAYFAWKAVAIGS 168
Query: 121 GRQAAKTEIEKLKLSEMTCRQGV 143
GR A E+ +M+ + +
Sbjct: 169 GRNTAMAIFEEKYKDDMSLEEAI 191
>sp|Q8TPX5|PSA_METAC Proteasome subunit alpha OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=psmA PE=3 SV=1
Length = 247
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 89/182 (48%), Gaps = 1/182 (0%)
Query: 3 VEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPV 62
V+K I S+++ S +I + H G A +GL AD R +V RA+ EA Y EPI V
Sbjct: 49 VDKRITSRLVEAESIEKIFQIDEHIGAATSGLVADARSLVDRARVEAQVNRVSYDEPIGV 108
Query: 63 KELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGR 122
+ +++++ + T Y +RP+G +++ G D + P+L+ +PSG Y AIG GR
Sbjct: 109 EVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNKPRLFETDPSGALLEYKATAIGAGR 168
Query: 123 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPD 182
A E +M ++ +Y E K A LE+ V E + + P+
Sbjct: 169 NAVVEVFEADYREDMNMDAAILLGMDALYKAA-EGKFDAGTLEVGVVSLEDKKFRKLGPE 227
Query: 183 EL 184
E+
Sbjct: 228 EV 229
>sp|Q18K08|PSA_HALWD Proteasome subunit alpha OS=Haloquadratum walsbyi (strain DSM
16790) GN=psmA PE=3 SV=1
Length = 250
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/143 (31%), Positives = 73/143 (51%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ +K S +M P S +IH H G+A AG AD RQ++ A+ +A YGEP+
Sbjct: 50 LAADKRSRSPLMEPTSVEKIHKTDDHVGIASAGHVADARQLIDFARRQAQVNRLRYGEPV 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
++ L + V + T RPFG +++GG + P+LY +PSG Y + +IG
Sbjct: 110 GIETLTKNVTDNIQQYTQVGGARPFGVALLIGGIEDGSPRLYETDPSGTPYEWKAVSIGA 169
Query: 121 GRQAAKTEIEKLKLSEMTCRQGV 143
R + +E+ E++ +GV
Sbjct: 170 DRSDLQEHLEENYTEELSLDEGV 192
>sp|O81149|PSA5A_ARATH Proteasome subunit alpha type-5-A OS=Arabidopsis thaliana GN=PAE1
PE=1 SV=1
Length = 237
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 82/165 (49%), Gaps = 15/165 (9%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ VEK I S ++ P S +I + H G A++GL AD R +V A+ E N+ YGEP+
Sbjct: 48 LAVEKRITSPLLEPSSVEKIMEIDDHIGCAMSGLIADARTLVEHARVETQNHRFSYGEPM 107
Query: 61 PVKELAQRVASYVHLCTLYWWL---------RPFGCGVILGGYDRDGPQLYMIEPSGISY 111
V+ Q LC L RPFG +++ G+D +GP LY +PSG +
Sbjct: 108 TVESTTQA------LCDLALRFGEGEEESMSRPFGVSLLIAGHDENGPSLYYTDPSGTFW 161
Query: 112 RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156
+ AIG G + A + +++ +++ ++ I+ V +E
Sbjct: 162 QCNAKAIGSGSEGADSSLQEQFNKDLSLQEAETIAVSILKQVMEE 206
>sp|Q9V2V6|PSA1_HALVD Proteasome subunit alpha 1 OS=Haloferax volcanii (strain ATCC 29605
/ DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM
B-1768 / DS2) GN=psmA1 PE=1 SV=2
Length = 252
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 78/156 (50%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ +K S +M P S +IH H G+A AG AD RQ++ A+ ++ YGEPI
Sbjct: 50 LAADKRSRSPLMEPTSVEKIHKADDHIGIASAGHVADARQLIDFARRQSQVNRLRYGEPI 109
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
++ L + V ++ T RPFG +++GG + P+LY +PSG Y + +IG
Sbjct: 110 GIETLTKEVTDHIQQYTQVGGARPFGVALLIGGVENGTPRLYETDPSGTPYEWKAVSIGA 169
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156
R + +E+ ++T +G+ + I DE
Sbjct: 170 DRGDHQEHLEENFRDDLTLDEGIELALEAIASTSDE 205
>sp|Q60177|PSA_METJA Proteasome subunit alpha OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=psmA PE=1 SV=1
Length = 261
Score = 87.8 bits (216), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 93/183 (50%), Gaps = 3/183 (1%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+ V++ I SK++ S +I + H A +GL AD R ++ RA+ EA Y YGE I
Sbjct: 49 LAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEI 108
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120
++ LA+++ T + +RPFG +++ G D++ +L+ +PSG Y AIG
Sbjct: 109 SIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGS 168
Query: 121 GRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180
GR +EK ++T +G+ + +++ K + ++ + V D Q +K+
Sbjct: 169 GRPVVMELLEKEYRDDITLDEGLELAITALTKANEDIKPENVDVCIITVKDA---QFKKI 225
Query: 181 PDE 183
P E
Sbjct: 226 PVE 228
>sp|O73672|PSA2_CARAU Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2
SV=3
Length = 234
Score = 87.0 bits (214), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/116 (38%), Positives = 65/116 (56%)
Query: 16 SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHL 75
S +I + +H GM +G+ D R +V RA+ A Y VY EPIP +L QRVAS +
Sbjct: 61 SVHKIEPITKHIGMVYSGMGPDYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQE 120
Query: 76 CTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEK 131
T +RPFG +++ G+D D P L+ +PSG + + A+GK KT +EK
Sbjct: 121 YTQSGGVRPFGVSLLIAGWDEDRPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEK 176
>sp|Q95005|PSA7_CAEEL Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4
PE=1 SV=1
Length = 253
Score = 86.3 bits (212), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 76/140 (54%), Gaps = 1/140 (0%)
Query: 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPI 60
+GVEK + + R+IH + H +A AGL+AD R +V RA+ E +Y+ +P+
Sbjct: 44 IGVEKKSIPALQDDRTIRKIHMIDDHVMLAFAGLSADARVLVDRARIECQSYKLTLEDPV 103
Query: 61 PVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIG 119
V +++ +A+ T RPFG +++GG+D DG P+L+ EPSG Y Y A G
Sbjct: 104 TVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATG 163
Query: 120 KGRQAAKTEIEKLKLSEMTC 139
+G + + +E+ E T
Sbjct: 164 RGEKPVREYLEEQYSEENTV 183
>sp|C3NEC6|PSA_SULIY Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.G.57.14
/ Yellowstone #1) GN=psmA PE=3 SV=1
Length = 241
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%)
Query: 4 EKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVK 63
EK A ++ S ++ + H G + AGLA+DGR ++ A++ A + +Y EP+ +
Sbjct: 53 EKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSID 112
Query: 64 ELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQ 123
L + VA + T + +RPFG +++ G D+ P+LYM EPSG Y AIG+G
Sbjct: 113 YLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYY 172
Query: 124 AAKTEIEKLKLSEMTCRQGVI 144
A +EK ++T ++
Sbjct: 173 TATEFLEKNYKEDLTIEDTIL 193
>sp|C3NHC6|PSA_SULIN Proteasome subunit alpha OS=Sulfolobus islandicus (strain Y.N.15.51
/ Yellowstone #2) GN=psmA PE=3 SV=1
Length = 241
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%)
Query: 4 EKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVK 63
EK A ++ S ++ + H G + AGLA+DGR ++ A++ A + +Y EP+ +
Sbjct: 53 EKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSID 112
Query: 64 ELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQ 123
L + VA + T + +RPFG +++ G D+ P+LYM EPSG Y AIG+G
Sbjct: 113 YLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYY 172
Query: 124 AAKTEIEKLKLSEMTCRQGVI 144
A +EK ++T ++
Sbjct: 173 TATEFLEKNYKEDLTIEDTIL 193
>sp|C3MVG1|PSA_SULIM Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.14.25 /
Kamchatka #1) GN=psmA PE=3 SV=1
Length = 241
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%)
Query: 4 EKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVK 63
EK A ++ S ++ + H G + AGLA+DGR ++ A++ A + +Y EP+ +
Sbjct: 53 EKRKAQSLLDVDSIEKVFLIDDHVGCSFAGLASDGRVLIDYARNIALQHRLIYDEPVSID 112
Query: 64 ELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQ 123
L + VA + T + +RPFG +++ G D+ P+LYM EPSG Y AIG+G
Sbjct: 113 YLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSVPKLYMTEPSGQYMPYQAVAIGQGYY 172
Query: 124 AAKTEIEKLKLSEMTCRQGVI 144
A +EK ++T ++
Sbjct: 173 TATEFLEKNYKEDLTIEDTIL 193
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,184,948
Number of Sequences: 539616
Number of extensions: 3100654
Number of successful extensions: 9368
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 8972
Number of HSP's gapped (non-prelim): 316
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)