Query 028888
Match_columns 202
No_of_seqs 127 out of 1169
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 04:07:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028888.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028888hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd03750 proteasome_alpha_type_ 100.0 9.4E-46 2E-50 300.5 24.1 186 1-189 41-226 (227)
2 PTZ00246 proteasome subunit al 100.0 3E-45 6.4E-50 302.0 25.1 199 1-199 45-248 (253)
3 COG0638 PRE1 20S proteasome, a 100.0 3.2E-45 6.9E-50 298.6 23.7 190 1-194 44-234 (236)
4 PRK03996 proteasome subunit al 100.0 1.8E-44 3.9E-49 295.4 24.1 190 1-192 50-239 (241)
5 KOG0176 20S proteasome, regula 100.0 3.7E-45 8E-50 280.3 16.8 188 1-191 48-240 (241)
6 cd03751 proteasome_alpha_type_ 100.0 1.4E-43 3E-48 285.0 20.9 169 1-169 44-212 (212)
7 TIGR03690 20S_bact_beta protea 100.0 2.6E-43 5.6E-48 284.8 22.2 190 1-194 16-216 (219)
8 TIGR03633 arc_protsome_A prote 100.0 4.4E-43 9.6E-48 284.3 21.9 182 1-184 43-224 (224)
9 cd03761 proteasome_beta_type_5 100.0 5.9E-43 1.3E-47 276.6 21.4 168 1-172 14-182 (188)
10 KOG0181 20S proteasome, regula 100.0 4.7E-44 1E-48 273.7 14.4 187 1-191 46-232 (233)
11 KOG0184 20S proteasome, regula 100.0 1.9E-43 4.2E-48 275.1 17.8 200 1-200 48-247 (254)
12 PTZ00488 Proteasome subunit be 100.0 1E-42 2.2E-47 285.4 22.7 190 1-197 53-243 (247)
13 cd03752 proteasome_alpha_type_ 100.0 9E-43 1.9E-47 280.5 21.3 169 1-169 43-213 (213)
14 KOG0178 20S proteasome, regula 100.0 4.8E-43 1E-47 271.1 18.7 200 1-200 45-248 (249)
15 cd03758 proteasome_beta_type_2 100.0 7.3E-43 1.6E-47 277.1 20.2 170 1-172 15-186 (193)
16 KOG0183 20S proteasome, regula 100.0 5.1E-43 1.1E-47 271.5 14.8 192 1-197 44-238 (249)
17 cd03755 proteasome_alpha_type_ 100.0 4.5E-42 9.7E-47 275.3 20.9 166 1-169 41-207 (207)
18 cd03759 proteasome_beta_type_3 100.0 5.1E-42 1.1E-46 272.6 20.5 175 1-180 17-194 (195)
19 cd03749 proteasome_alpha_type_ 100.0 9.2E-42 2E-46 274.3 21.3 168 1-170 41-211 (211)
20 cd03754 proteasome_alpha_type_ 100.0 8.2E-42 1.8E-46 275.3 20.8 168 1-169 43-215 (215)
21 cd03760 proteasome_beta_type_4 100.0 5.8E-42 1.3E-46 272.7 19.5 170 1-172 16-190 (197)
22 cd03765 proteasome_beta_bacter 100.0 3.9E-41 8.4E-46 273.6 22.4 182 1-184 14-214 (236)
23 cd03756 proteasome_alpha_arche 100.0 3.7E-41 8E-46 270.8 21.7 169 1-170 42-210 (211)
24 TIGR03634 arc_protsome_B prote 100.0 9.3E-41 2E-45 263.2 20.7 168 1-172 15-183 (185)
25 cd03764 proteasome_beta_archea 100.0 1.3E-40 2.7E-45 263.1 21.5 173 1-180 14-187 (188)
26 TIGR03691 20S_bact_alpha prote 100.0 1.6E-40 3.5E-45 269.4 21.2 181 1-189 41-228 (228)
27 cd03753 proteasome_alpha_type_ 100.0 1.4E-40 3.1E-45 267.7 20.6 168 1-169 41-213 (213)
28 cd03757 proteasome_beta_type_1 100.0 1.7E-40 3.7E-45 267.1 19.8 175 1-180 22-207 (212)
29 cd01911 proteasome_alpha prote 100.0 2.4E-40 5.3E-45 265.6 20.0 168 1-169 41-209 (209)
30 cd03763 proteasome_beta_type_7 100.0 7E-40 1.5E-44 259.2 20.1 167 1-172 14-181 (189)
31 KOG0182 20S proteasome, regula 100.0 2.1E-39 4.4E-44 251.0 19.9 192 2-195 51-245 (246)
32 cd03762 proteasome_beta_type_6 100.0 1.9E-39 4.1E-44 256.4 20.2 167 1-172 14-182 (188)
33 cd01912 proteasome_beta protea 100.0 3.7E-39 8E-44 254.6 20.2 168 1-172 14-183 (189)
34 cd01906 proteasome_protease_Hs 100.0 1.7E-38 3.8E-43 249.0 20.3 167 1-169 14-182 (182)
35 PF00227 Proteasome: Proteasom 100.0 4E-38 8.6E-43 248.5 19.1 169 1-169 18-190 (190)
36 KOG0863 20S proteasome, regula 100.0 4.9E-37 1.1E-41 240.5 17.8 193 2-198 47-242 (264)
37 KOG0175 20S proteasome, regula 100.0 3.9E-34 8.5E-39 227.3 13.7 191 1-198 85-276 (285)
38 KOG0179 20S proteasome, regula 100.0 2.2E-32 4.8E-37 211.6 16.3 176 1-181 43-231 (235)
39 KOG0177 20S proteasome, regula 100.0 1.9E-32 4.1E-37 209.0 14.5 168 1-172 15-186 (200)
40 KOG0174 20S proteasome, regula 100.0 4.1E-31 8.9E-36 202.4 12.5 183 1-189 33-217 (224)
41 KOG0173 20S proteasome, regula 100.0 6.8E-30 1.5E-34 202.7 14.2 171 1-177 51-222 (271)
42 cd01901 Ntn_hydrolase The Ntn 100.0 1.5E-27 3.2E-32 181.8 18.4 148 1-151 14-163 (164)
43 KOG0180 20S proteasome, regula 100.0 7.4E-28 1.6E-32 181.4 14.7 168 1-172 22-192 (204)
44 PRK05456 ATP-dependent proteas 99.9 1.1E-26 2.3E-31 180.7 15.5 151 1-167 15-170 (172)
45 cd01913 protease_HslV Protease 99.9 3E-26 6.5E-31 177.2 14.9 150 1-167 14-169 (171)
46 TIGR03692 ATP_dep_HslV ATP-dep 99.9 3E-25 6.5E-30 171.6 15.1 151 1-167 14-169 (171)
47 KOG0185 20S proteasome, regula 99.9 1.6E-25 3.5E-30 176.2 11.5 186 1-189 55-250 (256)
48 COG5405 HslV ATP-dependent pro 98.4 6E-06 1.3E-10 62.6 10.0 152 1-168 18-174 (178)
49 COG3484 Predicted proteasome-t 97.5 0.0012 2.6E-08 52.1 9.7 170 2-172 16-201 (255)
50 COG4079 Uncharacterized protei 84.2 3.2 7E-05 34.0 5.7 67 123-190 132-198 (293)
51 KOG3361 Iron binding protein i 81.4 3 6.4E-05 31.0 4.1 82 102-197 71-152 (157)
52 PF09894 DUF2121: Uncharacteri 79.1 8.9 0.00019 30.3 6.4 48 123-170 131-178 (194)
53 PRK08868 flagellar protein Fla 77.8 17 0.00036 27.5 7.3 54 141-194 75-132 (144)
54 PF03646 FlaG: FlaG protein; 75.0 11 0.00023 26.6 5.5 33 163-195 67-99 (107)
55 PRK07738 flagellar protein Fla 72.3 27 0.0006 25.4 7.1 33 163-195 76-108 (117)
56 PRK08452 flagellar protein Fla 71.7 31 0.00066 25.4 7.3 33 163-195 83-115 (124)
57 PF14804 Jag_N: Jag N-terminus 58.1 18 0.00038 22.3 3.3 34 137-177 5-38 (52)
58 COG1334 FlaG Uncharacterized f 57.9 59 0.0013 23.8 6.4 54 141-194 49-110 (120)
59 PF07499 RuvA_C: RuvA, C-termi 50.6 11 0.00023 22.5 1.4 32 117-148 12-44 (47)
60 PF06018 CodY: CodY GAF-like d 48.6 1.3E+02 0.0028 23.5 8.0 70 41-135 2-71 (177)
61 PF06057 VirJ: Bacterial virul 43.7 36 0.00079 27.0 3.8 33 59-95 44-76 (192)
62 PF05593 RHS_repeat: RHS Repea 38.4 48 0.001 18.5 2.8 25 96-120 3-27 (38)
63 COG3140 Uncharacterized protei 35.2 69 0.0015 20.0 3.2 35 123-157 14-48 (60)
64 PRK09570 rpoH DNA-directed RNA 32.2 39 0.00084 22.8 2.0 24 175-198 13-36 (79)
65 PRK04158 transcriptional repre 31.4 3.1E+02 0.0067 22.8 8.2 71 40-135 3-73 (256)
66 PF01242 PTPS: 6-pyruvoyl tetr 30.5 1.2E+02 0.0027 21.6 4.6 46 32-77 43-98 (123)
67 PF04539 Sigma70_r3: Sigma-70 30.4 1.1E+02 0.0024 19.7 4.0 30 42-71 3-32 (78)
68 TIGR01643 YD_repeat_2x YD repe 29.9 77 0.0017 17.7 2.8 10 104-113 11-20 (42)
69 PF01191 RNA_pol_Rpb5_C: RNA p 29.7 41 0.00089 22.4 1.8 23 175-197 10-32 (74)
70 PF11211 DUF2997: Protein of u 29.4 1.3E+02 0.0028 18.1 3.8 31 102-132 3-33 (48)
71 PHA03324 nuclear egress membra 27.3 88 0.0019 25.3 3.5 92 18-123 24-119 (274)
72 cd03067 PDI_b_PDIR_N PDIb fami 24.8 1.4E+02 0.0031 21.3 3.8 36 17-52 12-47 (112)
73 PF14593 PH_3: PH domain; PDB: 24.7 68 0.0015 22.7 2.3 16 97-112 36-51 (104)
74 PF05113 DUF693: Protein of un 24.5 2.6E+02 0.0057 23.6 5.9 58 88-147 98-158 (314)
75 COG4728 Uncharacterized protei 24.4 86 0.0019 22.3 2.6 31 19-49 9-39 (124)
76 COG2012 RPB5 DNA-directed RNA 24.1 75 0.0016 21.4 2.2 24 175-198 16-39 (80)
77 KOG3652 Uncharacterized conser 22.9 1.9E+02 0.0041 27.7 5.2 82 18-109 179-260 (1215)
78 PRK11508 sulfur transfer prote 22.6 2.9E+02 0.0062 19.8 5.2 36 34-73 39-74 (109)
79 KOG0695 Serine/threonine prote 22.4 3.1E+02 0.0067 24.2 6.1 59 133-198 31-89 (593)
80 PF00538 Linker_histone: linke 22.2 1.3E+02 0.0028 19.7 3.2 39 118-156 20-58 (77)
81 COG0334 GdhA Glutamate dehydro 21.1 4E+02 0.0087 23.8 6.7 58 133-197 71-129 (411)
82 PF01592 NifU_N: NifU-like N t 21.1 2.8E+02 0.0062 19.9 5.1 54 102-155 42-96 (126)
83 COG0771 MurD UDP-N-acetylmuram 21.0 1.1E+02 0.0024 27.6 3.4 63 87-150 346-411 (448)
84 cd01262 PH_PDK1 3-Phosphoinosi 20.8 71 0.0015 22.1 1.6 13 97-109 24-36 (89)
85 PRK05578 cytidine deaminase; V 20.4 3.2E+02 0.0069 20.1 5.2 39 137-178 1-39 (131)
No 1
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.4e-46 Score=300.50 Aligned_cols=186 Identities=26% Similarity=0.441 Sum_probs=177.1
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+||++|++|++|+++|+.+|++.+.+.+|.+++.|++.+|++|+++.++++|++++|.|++++
T Consensus 41 laad~~~~~~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~ 120 (227)
T cd03750 41 LATEKKVPSPLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYYLVYGEPIPVSQLVREIASVMQEYTQSG 120 (227)
T ss_pred EEEeecCCccccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 68999999888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
+.|||+|++||+|||++||+||++||+|++.+++++|+|+|+..++++||++|+++||++||++++++||+.+.++ ..+
T Consensus 121 ~~rP~~v~~li~G~D~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~~-~l~ 199 (227)
T cd03750 121 GVRPFGVSLLIAGWDEGGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLEKRYNEDLELEDAIHTAILTLKEGFEG-QMT 199 (227)
T ss_pred CCCChheEEEEEEEeCCCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhcc-cCC
Confidence 9999999999999998899999999999999999999999999999999999999999999999999999999887 457
Q ss_pred CceEEEEEEEecCCCeEEEcCHHHHHHHH
Q 028888 161 AFELEMSWVCDESNRQHQKVPDELLEEAK 189 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~i~~~~ 189 (202)
+.++||++|+++ + .++.++++||++++
T Consensus 200 ~~~iev~iv~~~-~-~~~~~~~~ei~~~~ 226 (227)
T cd03750 200 EKNIEIGICGET-K-GFRLLTPAEIKDYL 226 (227)
T ss_pred CCcEEEEEEECC-C-CEEECCHHHHHHHh
Confidence 778999999975 2 49999999999876
No 2
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=3e-45 Score=302.01 Aligned_cols=199 Identities=29% Similarity=0.457 Sum_probs=185.7
Q ss_pred CcccccCCCCCcccC-CcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++++ +++|||+|+++|+|+++|+.+|++.+.+.+|.+++.|++.++++++++.+++.++..+|.|+|+
T Consensus 45 laad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~l~~~l~~~~q~~~~~ 124 (253)
T PTZ00246 45 LGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYRYTYGEPQPVEQLVVQICDLKQSYTQF 124 (253)
T ss_pred EEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccc
Confidence 689999999998876 5799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
+++|||+|++||+|||+ .||+||++||+|++.+++++|+|+|+..++++||++|+++|+++||++++++||+.+.+++.
T Consensus 125 ~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~ 204 (253)
T PTZ00246 125 GGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTS 204 (253)
T ss_pred cCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999995 68999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCCceEEEEEEEecC---CCeEEEcCHHHHHHHHHHHHHhhhhc
Q 028888 159 DKAFELEMSWVCDES---NRQHQKVPDELLEEAKAAARAALEEM 199 (202)
Q Consensus 159 ~~~~~iei~~i~~~~---~~~~~~l~~~~i~~~~~~~~~~~~~~ 199 (202)
.++..++|++|+++. +..|+.|+++||++++.+.......+
T Consensus 205 ~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~~~~~~ 248 (253)
T PTZ00246 205 PKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQEYAKE 248 (253)
T ss_pred CCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhhhhhhh
Confidence 778889999999752 34599999999999998876555443
No 3
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-45 Score=298.56 Aligned_cols=190 Identities=28% Similarity=0.446 Sum_probs=178.4
Q ss_pred CcccccCCCCCcccCC-cCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPGS-NRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|||.++++++.+. ++|||+|+|||+|++||+.+|++.|++.+|.+++.|++.++++|+++.+++++++++|.|+++
T Consensus 44 laadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~~~~~~~i~v~~la~~ls~~l~~~~~~ 123 (236)
T COG0638 44 LAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYRLRYGEPISVEALAKLLSNILQEYTQS 123 (236)
T ss_pred EEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccC
Confidence 6899999999877765 899999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
.|||++++||+|+|+++|+||++||+|++.+++++|+|+|++.++++||++|+++|+++||++++++||+.+.+|+..
T Consensus 124 --~rP~gv~~iiaG~d~~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~y~~~m~~eeai~la~~al~~a~~rd~~ 201 (236)
T COG0638 124 --GRPYGVSLLVAGVDDGGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKEYREDLSLEEAIELAVKALRAAIERDAA 201 (236)
T ss_pred --cccceEEEEEEEEcCCCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 899999999999999779999999999999999999999999999999999999999999999999999999998765
Q ss_pred CCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHH
Q 028888 160 KAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 194 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~ 194 (202)
.+..++|++|+++ ..++.++.+++..++.....
T Consensus 202 s~~~~~v~vi~~~--~~~~~~~~~~~~~~~~~~~~ 234 (236)
T COG0638 202 SGGGIEVAVITKD--EGFRKLDGEEIKKLLDDLSE 234 (236)
T ss_pred CCCCeEEEEEEcC--CCeEEcCHHHHHHHHHHHhh
Confidence 6667899999986 24999999999988876543
No 4
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=1.8e-44 Score=295.38 Aligned_cols=190 Identities=29% Similarity=0.463 Sum_probs=181.0
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++++..+++.+|||+|+++++|++||..+|++.+.+.+|.+++.|++.++++++++.+++++++.+|.|++++
T Consensus 50 laad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 129 (241)
T PRK03996 50 LAVDKRITSPLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINRLTYGEPIGVETLTKKICDHKQQYTQHG 129 (241)
T ss_pred EEEeccCCCcccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 58999999888877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
+.|||+|++||+|||+.||+||++||+|++.+++++|+|+++..++++||+.|+++|+++||++++++||..+.++ ..+
T Consensus 130 ~~rP~~~~~ilaG~d~~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~-~~~ 208 (241)
T PRK03996 130 GVRPFGVALLIAGVDDGGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEG-KLD 208 (241)
T ss_pred CccchheEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhcc-CCC
Confidence 9999999999999998899999999999999999999999999999999999999999999999999999999987 667
Q ss_pred CceEEEEEEEecCCCeEEEcCHHHHHHHHHHH
Q 028888 161 AFELEMSWVCDESNRQHQKVPDELLEEAKAAA 192 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~ 192 (202)
++.++|+||+++ ++.|+.++++||++++++.
T Consensus 209 ~~~i~i~ii~~~-~~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 209 PENVEIAYIDVE-TKKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred CCcEEEEEEECC-CCcEEECCHHHHHHHHHHh
Confidence 888999999986 4469999999999998764
No 5
>KOG0176 consensus 20S proteasome, regulatory subunit alpha type PSMA5/PUP2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-45 Score=280.32 Aligned_cols=188 Identities=34% Similarity=0.493 Sum_probs=176.8
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc-
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY- 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~- 79 (202)
||++||++|+|+.++++.||++|++||+|++||+.+|++++++.+|.+|++|++.||++|+++.+.+.+|++...|-.-
T Consensus 48 L~vEKritSpLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~f~Y~e~i~VEs~tq~v~~LaLrFGe~~ 127 (241)
T KOG0176|consen 48 LAVEKRITSPLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHWFTYGEPISVESLTQAVSDLALRFGEGD 127 (241)
T ss_pred EEEeccccCcccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhceeecCCcccHHHHHHHHHHHHhHhCCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999887533
Q ss_pred ----ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhh
Q 028888 80 ----WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 80 ----~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~ 155 (202)
...|||||++|+||+|++||+||+.||+|++.+|++-|||+|+..+...|++.|+++|+++||+.+++..|+.+++
T Consensus 128 ~~~~~msRPFGValliAG~D~~gpqL~h~dPSGtf~~~~AKAIGSgsEga~~~L~~e~~~~ltL~ea~~~~L~iLkqVMe 207 (241)
T KOG0176|consen 128 DEEAIMSRPFGVALLIAGHDETGPQLYHLDPSGTFIRYKAKAIGSGSEGAESSLQEEYHKDLTLKEAEKIVLKILKQVME 207 (241)
T ss_pred chhhhhcCCcceEEEEeeccCCCceEEEeCCCCceEEecceeccccchHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 2359999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHH
Q 028888 156 EAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAA 191 (202)
Q Consensus 156 ~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~ 191 (202)
+ +....++|+++|+++ +.|++++++|++.++.+
T Consensus 208 e-Kl~~~Nvev~~vt~e--~~f~~~t~EE~~~~i~~ 240 (241)
T KOG0176|consen 208 E-KLNSNNVEVAVVTPE--GEFHIYTPEEVEQVIKR 240 (241)
T ss_pred H-hcCccceEEEEEccc--CceEecCHHHHHHHHhc
Confidence 8 666677999999986 35999999999998854
No 6
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-43 Score=284.96 Aligned_cols=169 Identities=70% Similarity=1.147 Sum_probs=162.7
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++..++++|||+|++|++|+++|+.+|++.+.+.+|.+++.|++++|++|+++.++++|++++|.|++++
T Consensus 44 la~d~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~~~v~~la~~ls~~~~~~t~~~ 123 (212)
T cd03751 44 LAVEKLVTSKLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYRDNYGTPIPVKVLADRVAMYMHAYTLYS 123 (212)
T ss_pred EEEEccccccccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccCC
Confidence 58999999988888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
++|||+|++||+|||++||+||++||+|++.+++++|+|+|+..++++||++|+++||++||+++++++|+.+.+....+
T Consensus 124 ~~rP~~vs~li~G~D~~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Lek~~~~dms~eeai~l~~~~L~~~~~~~~~~ 203 (212)
T cd03751 124 SVRPFGCSVLLGGYDSDGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELEKLKFSELTCREAVKEAAKIIYIVHDEIKDK 203 (212)
T ss_pred CcCCceEEEEEEEEeCCcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhhccCCC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999976778
Q ss_pred CceEEEEEE
Q 028888 161 AFELEMSWV 169 (202)
Q Consensus 161 ~~~iei~~i 169 (202)
.++|||+++
T Consensus 204 ~~~iei~~~ 212 (212)
T cd03751 204 AFELELSWV 212 (212)
T ss_pred CccEEEEEC
Confidence 888999874
No 7
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=2.6e-43 Score=284.76 Aligned_cols=190 Identities=19% Similarity=0.245 Sum_probs=171.3
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.+++ ++.+++.+|||+|++|++|+++|+.+|++.|.+.+|.+++.|+++++++|+++.++++|++++|.++ .
T Consensus 16 laad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~-~ 94 (219)
T TIGR03690 16 MAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYEKIEGVPLTLDGKANRLAAMVRGNL-P 94 (219)
T ss_pred EEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhh-h
Confidence 6899999985 5666789999999999999999999999999999999999999999999999999999999999987 4
Q ss_pred ccccceeeeEEEEEEeC--CCCeEEEECCCc-ceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 80 WWLRPFGCGVILGGYDR--DGPQLYMIEPSG-ISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~--~gp~Ly~~d~~G-~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~ 156 (202)
+.+|||+|++||+|||+ .+|+||++||+| ++..++++|+|+|+..++++||++|+++||++||++++++||..+.++
T Consensus 95 ~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms~eeai~l~~~al~~~~~~ 174 (219)
T TIGR03690 95 AAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLDEDDALRVAVEALYDAADD 174 (219)
T ss_pred hccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHhc
Confidence 56899999999999996 469999999999 577789999999999999999999999999999999999999999998
Q ss_pred cCCCCc--e-----EEEEEEEecCCCeEEEcCHHHHHHHHHHHHH
Q 028888 157 AKDKAF--E-----LEMSWVCDESNRQHQKVPDELLEEAKAAARA 194 (202)
Q Consensus 157 ~~~~~~--~-----iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~ 194 (202)
+...+. . +||++|+++ | |+.|+++||++++++..+
T Consensus 175 d~~s~~~~~~~~~~~ei~ii~~~-g--~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 175 DSATGGPDLVRGIYPTVVVITAD-G--ARRVPESELEELARAIVE 216 (219)
T ss_pred ccccCCcccccccccEEEEEccC-c--eEEcCHHHHHHHHHHHHh
Confidence 642232 2 389999743 3 999999999999987543
No 8
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=4.4e-43 Score=284.29 Aligned_cols=182 Identities=32% Similarity=0.522 Sum_probs=172.5
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++..++.+||++|+++++|++||..+|++.+.+.++.++..|+++++++++++.++++|++++|.|++++
T Consensus 43 laad~r~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~ls~~l~~~~~~~ 122 (224)
T TIGR03633 43 LAVDKRITSKLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINRLTYGEPIDVETLAKKICDLKQQYTQHG 122 (224)
T ss_pred EEEeccCCccccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 58999999888777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
+.|||+|++||+|+|+.||+||++||.|++.+++++|+|+++..++++|+++|+++|+++||++++++||..+.+ +...
T Consensus 123 ~~rP~~v~~ll~G~d~~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~-d~~~ 201 (224)
T TIGR03633 123 GVRPFGVALLIAGVDDGGPRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVE-DKLT 201 (224)
T ss_pred CccccceEEEEEEEeCCcCEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc-ccCC
Confidence 999999999999999889999999999999999999999999999999999999999999999999999999998 4677
Q ss_pred CceEEEEEEEecCCCeEEEcCHHH
Q 028888 161 AFELEMSWVCDESNRQHQKVPDEL 184 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~ 184 (202)
+..++|++|+++ |..|+.++++|
T Consensus 202 ~~~i~i~ii~~~-g~~~~~~~~~~ 224 (224)
T TIGR03633 202 PENVEVAYITVE-DKKFRKLSVEE 224 (224)
T ss_pred CCcEEEEEEEcC-CCcEEECCCCC
Confidence 778999999986 55699988764
No 9
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.9e-43 Score=276.55 Aligned_cols=168 Identities=15% Similarity=0.190 Sum_probs=159.8
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.+++. +.+++++|||+|++|++|+++|+.+|++.|++.+|.+++.|+++++++|+++.+++++++++|.+++
T Consensus 14 la~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~~~~~~~i~~~~la~~ls~~l~~~~~- 92 (188)
T cd03761 14 VAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYELRNKERISVAAASKLLSNMLYQYKG- 92 (188)
T ss_pred EEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcCC-
Confidence 68999999975 4457889999999999999999999999999999999999999999999999999999999999874
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
+||+|++||+|||++||+||++||+|++.+++++|+|+|+..++++||++|+++||++||++++++||+.+.+++..
T Consensus 93 ---~~~~v~~li~G~D~~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l~~~~l~~~~~rd~~ 169 (188)
T cd03761 93 ---MGLSMGTMICGWDKTGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDLARRAIYHATHRDAY 169 (188)
T ss_pred ---CCeEEEEEEEEEeCCCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 48999999999998899999999999999999999999999999999999999999999999999999999998878
Q ss_pred CCceEEEEEEEec
Q 028888 160 KAFELEMSWVCDE 172 (202)
Q Consensus 160 ~~~~iei~~i~~~ 172 (202)
++..++|++|+++
T Consensus 170 sg~~~~v~ii~~~ 182 (188)
T cd03761 170 SGGNVNLYHVRED 182 (188)
T ss_pred CCCCeEEEEEcCC
Confidence 8888999999974
No 10
>KOG0181 consensus 20S proteasome, regulatory subunit alpha type PSMA2/PRE8 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-44 Score=273.67 Aligned_cols=187 Identities=27% Similarity=0.437 Sum_probs=178.5
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||++|+..+.|.+..++.|+++|.++|+|.+||+.+|+|.+++..|+.++.|...|+++||+..|+..++..+|+|||.+
T Consensus 46 latekk~~s~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy~vY~e~~pt~qlv~~~asvmQEyTqsg 125 (233)
T KOG0181|consen 46 LATEKKDVSPLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYYRVYGEPIPTTQLVQEVASVMQEYTQSG 125 (233)
T ss_pred EEeccCCCCccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
+.||||++++|||||+.+|.||++||+|++..|+++|+|.+...+.+|||++|+++|.++++|..++.+|++.++. ..+
T Consensus 126 GvrPFGvslliaG~~~~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEkR~~edleldd~ihtailtlkE~feg-e~~ 204 (233)
T KOG0181|consen 126 GVRPFGVSLLIAGWDEGGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEKRYNEDLELDDAIHTAILTLKESFEG-EMT 204 (233)
T ss_pred CccccceEEEEeecCCCceeEEEECCccceeehhhhhhccCcchHHHHHHHHhccccccchHHHHHHHHHHHHhcc-ccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 456
Q ss_pred CceEEEEEEEecCCCeEEEcCHHHHHHHHHH
Q 028888 161 AFELEMSWVCDESNRQHQKVPDELLEEAKAA 191 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~ 191 (202)
..+|||+++.. + .|+.|+..||+.++..
T Consensus 205 ~~nieigv~~~-~--~F~~lt~~eI~d~l~~ 232 (233)
T KOG0181|consen 205 AKNIEIGVCGE-N--GFRRLTPAEIEDYLAS 232 (233)
T ss_pred cCceEEEEecC-C--ceeecCHHHHHHHHhc
Confidence 66799999884 2 4999999999999853
No 11
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-43 Score=275.14 Aligned_cols=200 Identities=66% Similarity=1.014 Sum_probs=192.7
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
|++||-.+|+|+.++.+.|||.|++||+|+++|+.+|.+.+.+.+|.++.+|+-+|+.|+|...+++.++++.|.||.++
T Consensus 48 l~vEKli~SkLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~~~y~~piP~~~la~rva~yvh~~Tly~ 127 (254)
T KOG0184|consen 48 LAVEKLITSKLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWRKNYGDPIPGKHLADRVADYVHAFTLYS 127 (254)
T ss_pred EEEeeeecccccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHhhhheeehhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
..|||||+.++++||.+||+||.+||+|.+..|+++|+|.|.+.|.+.|||....+|+.+|+++-+.+.|..++++.+.+
T Consensus 128 ~vRpfG~~~~~~~yd~~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElEKL~~~~mt~~e~VkeaakIiY~~HDe~KdK 207 (254)
T KOG0184|consen 128 SVRPFGASTILGSYDDEGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELEKLKIDEMTCKELVKEAAKIIYKVHDENKDK 207 (254)
T ss_pred ccccccceEEEEEEeCCCceEEEEcCCCCccceeeeeccchhHHHHHHHHhcccccccHHHHHHHHHheeEeecccccCc
Confidence 99999999999999999999999999999999999999999999999999999889999999999999999999998999
Q ss_pred CceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhhcc
Q 028888 161 AFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
.|.+|++|++.+||+.++.+|.+.+++.-+.+....+++|
T Consensus 208 ~feiEm~wvg~eTnG~h~~vp~el~~ea~~~a~~s~~~~d 247 (254)
T KOG0184|consen 208 EFEIEMGWVGEETNGLHEKVPSELLEEAEKYAKASLDEED 247 (254)
T ss_pred ceEEEEEEEEeecCCccccCcHHHHHHHHHHHHhhhcccc
Confidence 9999999999999999999999888888887777766665
No 12
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1e-42 Score=285.35 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=174.9
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.+++ ++.+++++|||+|++|++|+++|+.+|++.+.+.+|.+++.|++++|++|+++.++++|++++|.++
T Consensus 53 lAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~~~~g~~isv~~la~~ls~~l~~~R-- 130 (247)
T PTZ00488 53 IAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYELRNGELISVAAASKILANIVWNYK-- 130 (247)
T ss_pred EEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcC--
Confidence 6899999975 5666889999999999999999999999999999999999999999999999999999999998763
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
..|+.+++||+|||++||+||++||+|++.+++++|+|+|+..++++||+.|+++||.+||++++++||+.+.+|+..
T Consensus 131 --~~~~~v~~iiaG~D~~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms~eEai~l~~kal~~~~~Rd~~ 208 (247)
T PTZ00488 131 --GMGLSMGTMICGWDKKGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLNDEEAQDLGRRAIYHATFRDAY 208 (247)
T ss_pred --CCCeeEEEEEEEEeCCCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 235556689999998899999999999999999999999999999999999999999999999999999999998878
Q ss_pred CCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhh
Q 028888 160 KAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALE 197 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 197 (202)
++.+++|++|+++ | ++.++++||+++++++....|
T Consensus 209 sg~~~ei~iI~k~-g--~~~l~~~ei~~~l~~~~~~~~ 243 (247)
T PTZ00488 209 SGGAINLYHMQKD-G--WKKISADDCFDLHQKYAAEKE 243 (247)
T ss_pred cCCCeEEEEEcCC-c--cEECCHHHHHHHHHHHhhhcc
Confidence 8888999999964 4 899999999999988776554
No 13
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9e-43 Score=280.52 Aligned_cols=169 Identities=31% Similarity=0.462 Sum_probs=162.4
Q ss_pred CcccccCCCCCcccC-CcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++.+ +.+|||+|+++++|++||+.+|++.+.+.+|.+++.|+++++++|+++.+++.|+..+|.||++
T Consensus 43 la~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~~~~t~~ 122 (213)
T cd03752 43 LAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYLYSYQEPIPVEQLVQRLCDIKQGYTQY 122 (213)
T ss_pred EEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcC
Confidence 689999999998876 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
++.|||+|++||+|||+ .||+||++||+|++.+++++|+|+++..++++||++|+++||++||++++++||..+.+++.
T Consensus 123 ~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~y~~~ms~eea~~l~~~al~~~~~r~~ 202 (213)
T cd03752 123 GGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLKQDYKDDMTLEEALALAVKVLSKTMDSTK 202 (213)
T ss_pred CCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999996 68999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCceEEEEEE
Q 028888 159 DKAFELEMSWV 169 (202)
Q Consensus 159 ~~~~~iei~~i 169 (202)
.++.++||++|
T Consensus 203 ~~~~~~ei~~~ 213 (213)
T cd03752 203 LTSEKLEFATL 213 (213)
T ss_pred CCCCcEEEEEC
Confidence 78888999875
No 14
>KOG0178 consensus 20S proteasome, regulatory subunit alpha type PSMA4/PRE9 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-43 Score=271.06 Aligned_cols=200 Identities=22% Similarity=0.301 Sum_probs=186.2
Q ss_pred CcccccCCCCCcccC-CcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+++|.+++|+..+ ..+|||+|+|||+|+++|+.+|+..|++.+|..+|.|.+.||++||++.|+..++++.|.|||+
T Consensus 45 La~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl~~y~e~iP~eqLv~~lcdiKQayTQy 124 (249)
T KOG0178|consen 45 LAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYLFRYGEEIPCEQLVTFLCDIKQAYTQY 124 (249)
T ss_pred EEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHhhc
Confidence 688999999998876 4799999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHhhhcc
Q 028888 80 WWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMT-CRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s-~~eai~la~~~l~~~~~~~ 157 (202)
+|.||||||++.+|||+. |.+||+.||+|++..|++.|+|.++..++.+|...|+++.. ++||+.+|++.|....+..
T Consensus 125 gG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkqdykdd~~~~~eA~~laikvL~kt~d~~ 204 (249)
T KOG0178|consen 125 GGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQDYKDDENDLEEAKALAIKVLSKTLDSG 204 (249)
T ss_pred cCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHhhhccccccHHHHHHHHHHHHHhhcccC
Confidence 999999999999999986 89999999999999999999999999999999999988754 9999999999999999887
Q ss_pred CCCCceEEEEEEEecCCC-eEEEcCHHHHHHHHHHHHHhhhhcc
Q 028888 158 KDKAFELEMSWVCDESNR-QHQKVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
..++..+||+.|+++.+. .++++.++||..+++++....-+++
T Consensus 205 ~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~~~~~~~~~ 248 (249)
T KOG0178|consen 205 SLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKYHETQRQAE 248 (249)
T ss_pred CCChhheEEEEEEecCCceEEEecCHHHHHHHHHHhhhhhhhcc
Confidence 788888999999997654 4889999999999998877655443
No 15
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.3e-43 Score=277.08 Aligned_cols=170 Identities=20% Similarity=0.248 Sum_probs=161.1
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.+++. +.+++++|||+|+++++|+++|..+|++.|.+.+|.+++.|++.++++++++.+++++++++|.|+++
T Consensus 15 laad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~~~~~~~i~~~~la~~l~~~~~~~~~~ 94 (193)
T cd03758 15 LAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYKMRNGYELSPKAAANFTRRELAESLRS 94 (193)
T ss_pred EEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhc
Confidence 68999999876 66678999999999999999999999999999999999999999999999999999999999988765
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
. |||++++||+|||+ .||+||++||+|++.+++++|+|+|+..++++||++|+++||++||++++.+|++.+.+|+.
T Consensus 95 ~--rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~a~~~~~~rd~ 172 (193)
T cd03758 95 R--TPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEALELMKKCIKELKKRFI 172 (193)
T ss_pred C--CCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 3 89999999999996 68999999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCceEEEEEEEec
Q 028888 159 DKAFELEMSWVCDE 172 (202)
Q Consensus 159 ~~~~~iei~~i~~~ 172 (202)
.++.++||++|+++
T Consensus 173 ~~~~~i~i~ii~~~ 186 (193)
T cd03758 173 INLPNFTVKVVDKD 186 (193)
T ss_pred ccCCceEEEEEcCC
Confidence 88888999999974
No 16
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-43 Score=271.50 Aligned_cols=192 Identities=27% Similarity=0.397 Sum_probs=179.5
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
|++|||...+|+..++..||..+++|++|+++|+.+|++.+++.+|.+|+.|++..+.|++++.++++|+.+.|.|||.+
T Consensus 44 lgvEkkSv~~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShrlt~edpvtveyitRyiA~~kQrYTqs~ 123 (249)
T KOG0183|consen 44 LGVEKKSVPKLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHRLTLEDPVTVEYITRYIAGLKQRYTQSN 123 (249)
T ss_pred EEEeecchhhhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhhcccCCCcHHHHHHHHHHHhhhhhhccC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCC-CeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhcc
Q 028888 81 WLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSE--MTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~g-p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~--~s~~eai~la~~~l~~~~~~~ 157 (202)
+.||||+|.+|+|||.+| |+||++||+|.|.+|++.|+|.+++.+..||||+|.+. .+..++++|++++|.++...
T Consensus 124 grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflEK~y~e~~~~~~~~~ikL~ir~LleVvqs- 202 (249)
T KOG0183|consen 124 GRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLEKNYKEEAIATEGETIKLAIRALLEVVQS- 202 (249)
T ss_pred CcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHHHhcccccccccccHHHHHHHHHHHHhhc-
Confidence 999999999999999987 99999999999999999999999999999999999876 77889999999999999865
Q ss_pred CCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhh
Q 028888 158 KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALE 197 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 197 (202)
.+.+||++++... ..++.|+.++|+.++..+....|
T Consensus 203 --~~~nie~aVm~~~--~~~~~l~~~~I~~~v~~ie~E~e 238 (249)
T KOG0183|consen 203 --GGKNIEVAVMKRR--KDLKMLESEEIDDIVKEIEQEEE 238 (249)
T ss_pred --CCCeeEEEEEecC--CceeecCHHHHHHHHHHHHHHHH
Confidence 4556999999974 24999999999999998877733
No 17
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.5e-42 Score=275.33 Aligned_cols=166 Identities=28% Similarity=0.431 Sum_probs=158.2
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+.+++.+++.+||++|++|++|++||+.+|++.+.+.+|.+++.|+++++++|+++.++++|++++|.|++++
T Consensus 41 laad~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~y~~~~ 120 (207)
T cd03755 41 LGVEKKSVAKLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHRLTVEDPVTVEYITRYIAGLQQRYTQSG 120 (207)
T ss_pred EEEecCCCCcccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc
Confidence 58999998888777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 81 WLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
+.|||+|++||+|||++ ||+||++||+|++.+++++|+|+|+..++++||++|+++||++||++++++||..+.+ .
T Consensus 121 ~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~~l~~~~~---~ 197 (207)
T cd03755 121 GVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLEKNYKEEMTRDDTIKLAIKALLEVVQ---S 197 (207)
T ss_pred CcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC---C
Confidence 99999999999999975 8999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCceEEEEEE
Q 028888 160 KAFELEMSWV 169 (202)
Q Consensus 160 ~~~~iei~~i 169 (202)
+..++||++|
T Consensus 198 ~~~~~e~~~~ 207 (207)
T cd03755 198 GSKNIELAVM 207 (207)
T ss_pred CCCeEEEEEC
Confidence 5567999875
No 18
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.1e-42 Score=272.65 Aligned_cols=175 Identities=11% Similarity=0.128 Sum_probs=160.9
Q ss_pred CcccccCCCCCccc-CCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++. ++++|||+|++|++|+++|..+|++.+.+.+|.+++.|+++++++|+++.++++|++++|. ++
T Consensus 17 laad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~la~~l~~~ly~--~r 94 (195)
T cd03759 17 IASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYRLREEREIKPKTFSSLISSLLYE--KR 94 (195)
T ss_pred EEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH--hc
Confidence 68999999999775 4689999999999999999999999999999999999999999999999999999999854 32
Q ss_pred ccccceeeeEEEEEEeCC-CCeEEEECCCcceeeee-EEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 80 WWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
.|||+|++||+|||++ ||+||++||+|++..++ ++|+|+|++.++++||+.|+++||++||++++++||+.+.+++
T Consensus 95 --~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~rd 172 (195)
T cd03759 95 --FGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDELFETISQALLSAVDRD 172 (195)
T ss_pred --CCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhC
Confidence 6899999999999965 69999999999998887 9999999999999999999999999999999999999999988
Q ss_pred CCCCceEEEEEEEecCCCeEEEc
Q 028888 158 KDKAFELEMSWVCDESNRQHQKV 180 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l 180 (202)
..++.+++|++|+++ |...+.|
T Consensus 173 ~~~~~~~~i~ii~~~-g~~~~~~ 194 (195)
T cd03759 173 ALSGWGAVVYIITKD-KVTTRTL 194 (195)
T ss_pred cccCCceEEEEEcCC-cEEEEec
Confidence 778888999999974 6555543
No 19
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=9.2e-42 Score=274.27 Aligned_cols=168 Identities=28% Similarity=0.469 Sum_probs=158.9
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++++. +..+|||+|+++++|++||+.+|++.+.+.+|.+++.|+++++++|+++.+++.+++.+|.|++++
T Consensus 41 laad~r~~~~l~--~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~is~~~~~~t~~~ 118 (211)
T cd03749 41 LVALKRATSELS--SYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYRFVYDSPIPVSRLVSKVAEKAQINTQRY 118 (211)
T ss_pred EEEeccCccccC--CccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 589999988853 456999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHhhhccC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKL--SEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~--~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
+.|||+|++||+|||+.||+||++||+|++.+++++|+|++++.++++||++|+ ++||++|++++++++|+.+.+++.
T Consensus 119 ~~rP~~v~~ii~G~D~~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~ 198 (211)
T cd03749 119 GRRPYGVGLLIAGYDESGPHLFQTCPSGNYFEYKATSIGARSQSARTYLERHFEEFEDCSLEELIKHALRALRETLPGEQ 198 (211)
T ss_pred CCCCceEEEEEEEEcCCCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHhccCC
Confidence 999999999999999889999999999999999999999999999999999998 599999999999999999998754
Q ss_pred -CCCceEEEEEEE
Q 028888 159 -DKAFELEMSWVC 170 (202)
Q Consensus 159 -~~~~~iei~~i~ 170 (202)
.++.+|||++|+
T Consensus 199 ~~~~~~iei~ii~ 211 (211)
T cd03749 199 ELTIKNVSIAIVG 211 (211)
T ss_pred CCCCCcEEEEEEC
Confidence 788889999874
No 20
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.2e-42 Score=275.27 Aligned_cols=168 Identities=30% Similarity=0.429 Sum_probs=159.7
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+|||+|+++++|++||+.+|++.+.+.+|.+++.|+++++++|+++.+|+++++++|.|++++
T Consensus 43 laad~r~~~~~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~v~~la~~ls~~~q~yt~~~ 122 (215)
T cd03754 43 VVTQKKVPDKLIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFKYKYGYEMPVDVLAKRIADINQVYTQHA 122 (215)
T ss_pred EEEeccccccccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhCCC
Confidence 58999999988877788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCC--C--CHHHHHHHHHHHHHHhhh
Q 028888 81 WLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSE--M--TCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~--~--s~~eai~la~~~l~~~~~ 155 (202)
+.|||++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||++|+++ | |++||++++++||..+.+
T Consensus 123 ~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~~~~~~s~eeai~l~~~al~~~~~ 202 (215)
T cd03754 123 YMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFLEKKLKKKPDLIESYEETVELAISCLQTVLS 202 (215)
T ss_pred CCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999996 5899999999999999999999999999999999999985 7 999999999999999998
Q ss_pred ccCCCCceEEEEEE
Q 028888 156 EAKDKAFELEMSWV 169 (202)
Q Consensus 156 ~~~~~~~~iei~~i 169 (202)
++ .++.++||+||
T Consensus 203 rd-~~~~~~ei~~~ 215 (215)
T cd03754 203 TD-FKATEIEVGVV 215 (215)
T ss_pred cc-CCCCcEEEEEC
Confidence 85 45788999985
No 21
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.8e-42 Score=272.72 Aligned_cols=170 Identities=15% Similarity=0.113 Sum_probs=159.2
Q ss_pred CcccccCCC-CCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHH-HhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIAS-KMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEAT-NYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~-~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~-~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|.++ .++.+++++|||+|+++++|+++|+.+|++.+++.+|.+++ .+++.++++|+++.++++|++++ |++
T Consensus 16 laad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~~~~~~~la~~i~~~~--y~~ 93 (197)
T cd03760 16 IAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDECLDDGHSLSPKEIHSYLTRVL--YNR 93 (197)
T ss_pred EEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--HHH
Confidence 689999995 56777889999999999999999999999999999999987 56788999999999999999986 678
Q ss_pred cccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhh
Q 028888 79 YWWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS--EMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~eai~la~~~l~~~~~ 155 (202)
++++|||+|++||||||+ .||+||++||+|++.+++++|+|+|+..++++||+.|++ +||++||++++++||+.+.+
T Consensus 94 ~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms~eea~~l~~~~l~~~~~ 173 (197)
T cd03760 94 RSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLTEEEARALIEECMKVLYY 173 (197)
T ss_pred hhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 888999999999999997 689999999999999999999999999999999999999 99999999999999999999
Q ss_pred ccCCCCceEEEEEEEec
Q 028888 156 EAKDKAFELEMSWVCDE 172 (202)
Q Consensus 156 ~~~~~~~~iei~~i~~~ 172 (202)
++..++.++||++|+++
T Consensus 174 rd~~~~~~~~i~ii~~~ 190 (197)
T cd03760 174 RDARSINKYQIAVVTKE 190 (197)
T ss_pred hccccCCceEEEEECCC
Confidence 88778888999999974
No 22
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.9e-41 Score=273.64 Aligned_cols=182 Identities=12% Similarity=0.101 Sum_probs=163.8
Q ss_pred CcccccCCCCCcccCCcCceEEec----CcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCC-CCCHHHHHHHHHHHHHH
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVH----RHSGMAVAGLAADGRQIVTRAKSEATNYESVYGE-PIPVKELAQRVASYVHL 75 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~-~i~~~~la~~ls~~~~~ 75 (202)
||+|||++++++..++.+|||+|+ +||+|++||+.+|++.+++.+|.+++.|++++|+ +++++.+|++++++++.
T Consensus 14 Laadkr~~~~l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~~~~v~~la~~i~~~l~~ 93 (236)
T cd03765 14 FASDSRTNAGVDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPEETNLLNAPTMFDAARYVGETLRE 93 (236)
T ss_pred EEEccCccCCCccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhHHhhCCCCCCHHHHHHHHHHHHHH
Confidence 689999999988777889999998 9999999999999999999999999999999999 89999999999998654
Q ss_pred -hhhccc-----ccceeeeEEEEEEeC-CCCeEEEECCCcceeeee----EEeeCCChHHHHHHHHhcCCCCCCHHHHHH
Q 028888 76 -CTLYWW-----LRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYF----GAAIGKGRQAAKTEIEKLKLSEMTCRQGVI 144 (202)
Q Consensus 76 -~~~~~~-----~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~----~~a~G~gs~~~~~~Le~~~~~~~s~~eai~ 144 (202)
++|+.+ .|||+|++||+|||+ .||+||++||+|++.+++ ++|+|. ++.++++||++|+++||++||++
T Consensus 94 ~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~~~Lek~yk~~ms~eeai~ 172 (236)
T cd03765 94 VQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGKPILDRVITPDTSLEDAAK 172 (236)
T ss_pred HHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhHHHHHHhcCCCCCHHHHHH
Confidence 556554 489999999999995 689999999999999994 589996 79999999999999999999999
Q ss_pred HHHHHHHHhhhccCCCCceEEEEEEEecCCC---eEEEcCHHH
Q 028888 145 EVAKIIYGVHDEAKDKAFELEMSWVCDESNR---QHQKVPDEL 184 (202)
Q Consensus 145 la~~~l~~~~~~~~~~~~~iei~~i~~~~~~---~~~~l~~~~ 184 (202)
+|++||..+.+++..++..|+|++|+++ |. ..+.+.+++
T Consensus 173 la~~al~~a~~rd~~sg~~iev~vI~k~-G~~~~~~~~~~~~~ 214 (236)
T cd03765 173 CALVSMDSTMRSNLSVGPPLDLLVYERD-SLQVGHYRRIEEDD 214 (236)
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEEEECC-CeeeeeeEEecCCC
Confidence 9999999999998888888999999986 42 345566655
No 23
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-41 Score=270.76 Aligned_cols=169 Identities=33% Similarity=0.545 Sum_probs=162.3
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++..++.+||++|+++++|++||+.+|++.+.+.++.+++.|+++++++++++.+++.|++.+|.|++++
T Consensus 42 la~d~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~la~~ls~~~~~~~~~~ 121 (211)
T cd03756 42 LAVDKRITSKLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHRLTYGEPIDVEVLVKKICDLKQQYTQHG 121 (211)
T ss_pred EEEeccCCCcccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 58999999888777889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
+.|||++++||+|||+.||+||++||+|++.+++++|+|+++..++++||++|+++|+++||++++++||..+.+++ ..
T Consensus 122 ~~rP~~v~~ll~G~D~~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~m~~~ea~~l~~~~l~~~~~~~-~~ 200 (211)
T cd03756 122 GVRPFGVALLIAGVDDGGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLEKEYKEDMSLEEAIELALKALYAALEEN-ET 200 (211)
T ss_pred CeechhEEEEEEEEeCCCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CC
Confidence 99999999999999998999999999999999999999999999999999999999999999999999999998874 47
Q ss_pred CceEEEEEEE
Q 028888 161 AFELEMSWVC 170 (202)
Q Consensus 161 ~~~iei~~i~ 170 (202)
+.++||++|+
T Consensus 201 ~~~~~v~ii~ 210 (211)
T cd03756 201 PENVEIAYVT 210 (211)
T ss_pred CCcEEEEEEe
Confidence 7789999986
No 24
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=9.3e-41 Score=263.19 Aligned_cols=168 Identities=21% Similarity=0.337 Sum_probs=159.3
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.+++. +.+++++|||+|+++++|+++|..+|++.+.+.++.+++.|++.++++++++.++++|++++|.+
T Consensus 15 la~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~--- 91 (185)
T TIGR03634 15 LAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYELRRGRPMSVKALATLLSNILNSN--- 91 (185)
T ss_pred EEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc---
Confidence 68999999765 55678899999999999999999999999999999999999999999999999999999999886
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
++|||+|++||+|||++||+||++||+|++.+++++|+|+++..++++||+.|+++||++||++++++||+.+.+++..
T Consensus 92 -~~rP~~v~~ivaG~d~~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~~l~~~~~r~~~ 170 (185)
T TIGR03634 92 -RFFPFIVQLLVGGVDEEGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKKLAVRAIKSAIERDVA 170 (185)
T ss_pred -CCCCeEEEEEEEEEeCCCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 5899999999999999899999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceEEEEEEEec
Q 028888 160 KAFELEMSWVCDE 172 (202)
Q Consensus 160 ~~~~iei~~i~~~ 172 (202)
++.+++|++|+++
T Consensus 171 ~~~~~~v~ii~~~ 183 (185)
T TIGR03634 171 SGNGIDVAVITKD 183 (185)
T ss_pred CCCCEEEEEEcCC
Confidence 8888999999974
No 25
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.3e-40 Score=263.12 Aligned_cols=173 Identities=20% Similarity=0.325 Sum_probs=162.4
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|. +.+++.+||++|+++++++++|..+|++.+.+.+|.+++.|++.++++++++.+++++++++|.+
T Consensus 14 ia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~--- 90 (188)
T cd03764 14 LAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYELRRGRPMSIKALATLLSNILNSS--- 90 (188)
T ss_pred EEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhc---
Confidence 68999999975 55578899999999999999999999999999999999999999999999999999999999886
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
++|||+|++||||||++||+||++||+|++.+++++|+|+|+..++++|++.|+++|+++||++++++||+.+.+++..
T Consensus 91 -~~~P~~~~~lvaG~d~~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l~~~~l~~~~~rd~~ 169 (188)
T cd03764 91 -KYFPYIVQLLIGGVDEEGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKLAIRAIKSAIERDSA 169 (188)
T ss_pred -CCCCcEEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 4899999999999998889999999999999999999999999999999999999999999999999999999998877
Q ss_pred CCceEEEEEEEecCCCeEEEc
Q 028888 160 KAFELEMSWVCDESNRQHQKV 180 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l 180 (202)
++.+++|++|+++ | ++.|
T Consensus 170 ~~~~i~i~iv~~~-g--~~~~ 187 (188)
T cd03764 170 SGDGIDVVVITKD-G--YKEL 187 (188)
T ss_pred CCCcEEEEEECCC-C--eEeC
Confidence 8888999999974 4 6665
No 26
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=1.6e-40 Score=269.43 Aligned_cols=181 Identities=15% Similarity=0.111 Sum_probs=162.0
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhC-CCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYG-EPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+||+. ++.+|||+|++||+|+++|+.+|++.+++.++.+++.|++.++ .+++++.+|+.+++.++.++ +
T Consensus 41 Laaek~~-------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~~~~~~~~~~v~~la~~~tq~~~~~~-~ 112 (228)
T TIGR03691 41 FVAENPS-------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRGYSYDRRDVTGRGLANAYAQTLGTIF-T 112 (228)
T ss_pred EEEecCC-------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHhhhcCCCCccHHHHHHHHHhhccccc-c
Confidence 5777762 4679999999999999999999999999999999999999998 78999999998888887766 5
Q ss_pred ccccceeeeEEEEEEeC--CCCeEEEECCCcceeeee-EEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhh-
Q 028888 80 WWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHD- 155 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~--~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~- 155 (202)
++.|||+|++||+|||+ .||+||++||+|++.+++ ++|+|++++.++++||++|+++||++||++++++||+.+.+
T Consensus 113 ~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~~Lek~y~~~ms~eeai~la~~aL~~~~~~ 192 (228)
T TIGR03691 113 EQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIATALKESYRDGLSLADALGLAVQALRAGGNG 192 (228)
T ss_pred cccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcc
Confidence 67899999999999985 589999999999999976 89999999999999999999999999999999999999964
Q ss_pred -ccCCCCceEEEEEEEecC-CCeEEEcCHHHHHHHH
Q 028888 156 -EAKDKAFELEMSWVCDES-NRQHQKVPDELLEEAK 189 (202)
Q Consensus 156 -~~~~~~~~iei~~i~~~~-~~~~~~l~~~~i~~~~ 189 (202)
++..++.++||++|+++. .+.|+.|+++||++++
T Consensus 193 ~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 193 EKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred ccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 445677789999999742 3569999999999864
No 27
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-40 Score=267.69 Aligned_cols=168 Identities=32% Similarity=0.487 Sum_probs=158.5
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc-
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY- 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~- 79 (202)
||+|+|.+++++..++.+||++|++|++|+++|+.+|++.+.+.+|.+++.|++++|++|+++.++++|++++|.|+++
T Consensus 41 laad~r~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~~~~~ls~~~~~~~~~~ 120 (213)
T cd03753 41 LAVEKRITSPLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHRFTYNEPMTVESVTQAVSDLALQFGEGD 120 (213)
T ss_pred EEEecccCCcCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhCcc
Confidence 5899999988887788999999999999999999999999999999999999999999999999999999999999874
Q ss_pred ----ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhh
Q 028888 80 ----WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 80 ----~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~ 155 (202)
++.|||+|++||+|||+.||+||++||+|++.+++++|+|++++.++++|+++|+++||++||++++++||+.+.+
T Consensus 121 ~~~~~~~rP~~v~~ii~G~D~~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~eeai~l~~~~l~~~~~ 200 (213)
T cd03753 121 DGKKAMSRPFGVALLIAGVDENGPQLFHTDPSGTFTRCDAKAIGSGSEGAQSSLQEKYHKDMTLEEAEKLALSILKQVME 200 (213)
T ss_pred cccccccccceEEEEEEEEcCCCCEEEEECCCCCeecccEEEECCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhc
Confidence 3479999999999999989999999999999999999999999999999999999999999999999999999987
Q ss_pred ccCCCCceEEEEEE
Q 028888 156 EAKDKAFELEMSWV 169 (202)
Q Consensus 156 ~~~~~~~~iei~~i 169 (202)
+ ..++.++||++|
T Consensus 201 ~-~~~~~~~ei~~~ 213 (213)
T cd03753 201 E-KLNSTNVELATV 213 (213)
T ss_pred c-cCCCCcEEEEEC
Confidence 6 567777999875
No 28
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.7e-40 Score=267.07 Aligned_cols=175 Identities=14% Similarity=0.175 Sum_probs=160.7
Q ss_pred CcccccCCCCCcc-cCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++ .++++|||+|+++++|+++|..+|++.+.+.+|.+++.|++.+|++|+++.++++|++++|..
T Consensus 22 laaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~~~~g~~i~~~~la~~ls~~ly~~--- 98 (212)
T cd03757 22 IAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYKYSHNKEMSTEAIAQLLSTILYSR--- 98 (212)
T ss_pred EEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHhHHhCCCCCHHHHHHHHHHHHHhh---
Confidence 6899999999966 578899999999999999999999999999999999999999999999999999999999653
Q ss_pred ccccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCC---------CCCCHHHHHHHHHHH
Q 028888 80 WWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKL---------SEMTCRQGVIEVAKI 149 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~---------~~~s~~eai~la~~~ 149 (202)
+.|||+|++||||||++ +|+||++||+|++.+++++|+|+|+..++++||+.|+ ++||++||++++++|
T Consensus 99 -R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~~~~~ms~eea~~l~~~~ 177 (212)
T cd03757 99 -RFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNVERTPLSLEEAVSLVKDA 177 (212)
T ss_pred -cCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcCCCCCCCHHHHHHHHHHH
Confidence 25799999999999965 6999999999999999999999999999999999974 899999999999999
Q ss_pred HHHhhhccCCCCceEEEEEEEecCCCeEEEc
Q 028888 150 IYGVHDEAKDKAFELEMSWVCDESNRQHQKV 180 (202)
Q Consensus 150 l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l 180 (202)
|+.+.+++..++.+++|++|+++ |...+.+
T Consensus 178 l~~~~~rd~~sg~~i~i~iit~~-g~~~~~~ 207 (212)
T cd03757 178 FTSAAERDIYTGDSLEIVIITKD-GIEEETF 207 (212)
T ss_pred HHHHHHhCcccCCCEEEEEEcCC-CEEEEee
Confidence 99999988778888999999985 6444443
No 29
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=2.4e-40 Score=265.62 Aligned_cols=168 Identities=43% Similarity=0.693 Sum_probs=161.2
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+.+++..++.+|||+|+++++|+++|..+|++.+.+.++.++..|++++|++|+++.+++++++++|.|++++
T Consensus 41 laaD~~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~g~~~~~~~la~~ls~~~~~~~~~~ 120 (209)
T cd01911 41 LAVEKKVTSKLLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYRYTYGEPIPVEVLVKRIADLAQVYTQYG 120 (209)
T ss_pred EEEEecCCccccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 58999999888766788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 81 WLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
+.|||+|++||+|||++ ||+||.+||.|++.+++++|+|+++..++++|++.|+++|+.+||++++++||+.+.+++.
T Consensus 121 ~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~ms~~ea~~l~~~~l~~~~~~d~- 199 (209)
T cd01911 121 GVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLEKRYKKDLTLEEAIKLALKALKEVLEEDK- 199 (209)
T ss_pred CccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHhccC-
Confidence 99999999999999976 8999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCceEEEEEE
Q 028888 160 KAFELEMSWV 169 (202)
Q Consensus 160 ~~~~iei~~i 169 (202)
+++.++|+++
T Consensus 200 ~~~~~~i~i~ 209 (209)
T cd01911 200 KAKNIEIAVV 209 (209)
T ss_pred CCCcEEEEEC
Confidence 8888999874
No 30
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7e-40 Score=259.16 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=157.5
Q ss_pred CcccccCCCCCcc-cCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++ .++++|||+|+++++|+++|..+|++.+.+.+|.+++.|+++++++++++.++++|++.+|.|+
T Consensus 14 laad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~l~~~~-- 91 (189)
T cd03763 14 LGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHRLNTGRKPRVVTALTMLKQHLFRYQ-- 91 (189)
T ss_pred EEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHcC--
Confidence 6899999998644 5678999999999999999999999999999999999999999999999999999999998763
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
.||+|++||||||++||+||.+||+|++.+++++|+|+++..++++|+++|+++||++||++++++||+.+.+++..
T Consensus 92 ---~p~~v~~ivaG~d~~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~~~~l~~~~~rd~~ 168 (189)
T cd03763 92 ---GHIGAALVLGGVDYTGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLVCEAIEAGIFNDLG 168 (189)
T ss_pred ---CccceeEEEEeEcCCCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhcCc
Confidence 39999999999998899999999999999999999999999999999999999999999999999999999998767
Q ss_pred CCceEEEEEEEec
Q 028888 160 KAFELEMSWVCDE 172 (202)
Q Consensus 160 ~~~~iei~~i~~~ 172 (202)
.+..++|++|+++
T Consensus 169 ~~~~~~v~ii~~~ 181 (189)
T cd03763 169 SGSNVDLCVITKD 181 (189)
T ss_pred CCCceEEEEEcCC
Confidence 7778999999974
No 31
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=251.05 Aligned_cols=192 Identities=26% Similarity=0.379 Sum_probs=180.9
Q ss_pred cccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhccc
Q 028888 2 GVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWW 81 (202)
Q Consensus 2 a~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~ 81 (202)
++.|+.+.+|++++++..+|+|+.+|+|+++|+.+|++..+.++|.++.+++|+||++||++.||+.++++.|.|||+..
T Consensus 51 vsqKkvpDKLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~yk~Gyemp~DiL~k~~Ad~~QvytQ~a~ 130 (246)
T KOG0182|consen 51 VTQKKVPDKLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFRYKYGYEMPCDILAKRMADKSQVYTQNAA 130 (246)
T ss_pred EecccCcccccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHhhHHHHHhhhhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCC--CCHHHHHHHHHHHHHHhhhccC
Q 028888 82 LRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSE--MTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 82 ~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~--~s~~eai~la~~~l~~~~~~~~ 158 (202)
+||+||.+++.|+|+. ||.+|.+||.|-+..+++++.|-....+.++||++|+++ .|.+|++++++.||..+..- .
T Consensus 131 mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfLEKk~Kk~~~~t~~e~ve~ai~al~~sl~~-D 209 (246)
T KOG0182|consen 131 MRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFLEKKYKKDIDLTFEETVETAISALQSSLGI-D 209 (246)
T ss_pred hcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHHHHhhccCccchHHHHHHHHHHHHHHHHhc-c
Confidence 9999999999999986 899999999999999999999999999999999999887 66999999999999999976 4
Q ss_pred CCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHh
Q 028888 159 DKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 195 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~ 195 (202)
.+...+||++++++ +..|+.|+.+||+++|..+-+.
T Consensus 210 fk~se~EVgvv~~~-~p~f~~Ls~~eie~hL~~IAEk 245 (246)
T KOG0182|consen 210 FKSSELEVGVVTVD-NPEFRILSAEEIEEHLQAIAEK 245 (246)
T ss_pred cCCcceEEEEEEcC-CcceeeccHHHHHHHHHHhhhc
Confidence 56667999999996 5579999999999999876543
No 32
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.9e-39 Score=256.40 Aligned_cols=167 Identities=17% Similarity=0.178 Sum_probs=157.7
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|. +.+++++|||+|++|++|+++|..+|++.+.+.++.+++.|++.++++++++.+++++++++|.++
T Consensus 14 la~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~-- 91 (188)
T cd03762 14 LGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHSIELGEPPLVKTAASLFKNLCYNYK-- 91 (188)
T ss_pred EEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHhcc--
Confidence 68999999975 445678999999999999999999999999999999999999999999999999999999998774
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
|||+|++||+|||+ +||+||++||.|++.+++++++|+++..++++||+.|+++||++||++++++||+.+.+|+.
T Consensus 92 ---~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~~~al~~~~~rd~ 168 (188)
T cd03762 92 ---EMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFVKNALSLAMSRDG 168 (188)
T ss_pred ---ccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 79999999999996 68999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEEEEec
Q 028888 159 DKAFELEMSWVCDE 172 (202)
Q Consensus 159 ~~~~~iei~~i~~~ 172 (202)
.++..++|++|+++
T Consensus 169 ~~~~~~~i~~i~~~ 182 (188)
T cd03762 169 SSGGVIRLVIITKD 182 (188)
T ss_pred ccCCCEEEEEECCC
Confidence 78888999999974
No 33
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=3.7e-39 Score=254.64 Aligned_cols=168 Identities=20% Similarity=0.267 Sum_probs=160.5
Q ss_pred CcccccCCCCCcc-cCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++ +++++|||+|+++++|+++|+.+|++.+.+.++.+++.|++.++++++++.+++++++++|.+++
T Consensus 14 la~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~- 92 (189)
T cd01912 14 LAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYELRNGRELSVKAAANLLSNILYSYRG- 92 (189)
T ss_pred EEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC-
Confidence 6899999999877 78899999999999999999999999999999999999999999999999999999999998874
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
|||++++||+|||+ ++|+||++||+|++.+++++|+|++++.++++||+.|+++||++||++++.+||+.+.+++.
T Consensus 93 ---~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~~~~~l~~~~~~d~ 169 (189)
T cd01912 93 ---FPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVELVKKAIDSAIERDL 169 (189)
T ss_pred ---CCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 89999999999997 68999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCceEEEEEEEec
Q 028888 159 DKAFELEMSWVCDE 172 (202)
Q Consensus 159 ~~~~~iei~~i~~~ 172 (202)
..+.+++|++|+++
T Consensus 170 ~~~~~~~v~vi~~~ 183 (189)
T cd01912 170 SSGGGVDVAVITKD 183 (189)
T ss_pred ccCCcEEEEEECCC
Confidence 77888999999974
No 34
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=1.7e-38 Score=248.96 Aligned_cols=167 Identities=34% Similarity=0.533 Sum_probs=159.1
Q ss_pred CcccccCCCCCcc-cCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++.+ .++.+|||+|+++++|+++|..+|++.+.+.++.++..|++.++++++++.++++|++++|.+++.
T Consensus 14 la~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 93 (182)
T cd01906 14 LAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYRLRYGEPIPVEALAKLLANLLYEYTQS 93 (182)
T ss_pred EEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC
Confidence 6899999999876 678899999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
.|||++++|++|||+ .||+||.+||.|++.+++++|+|+++..++++||+.|+++||++||++++++||..+.+++.
T Consensus 94 --~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~~l~~~~l~~~~~~~~ 171 (182)
T cd01906 94 --LRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAIELALKALKSALERDL 171 (182)
T ss_pred --ccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHcccC
Confidence 799999999999997 68999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEEEE
Q 028888 159 DKAFELEMSWV 169 (202)
Q Consensus 159 ~~~~~iei~~i 169 (202)
.++..++|++|
T Consensus 172 ~~~~~~~i~ii 182 (182)
T cd01906 172 YSGGNIEVAVI 182 (182)
T ss_pred CCCCCEEEEEC
Confidence 67778998875
No 35
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=4e-38 Score=248.52 Aligned_cols=169 Identities=29% Similarity=0.444 Sum_probs=159.9
Q ss_pred CcccccCCCCCc--ccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASKMM--LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l~--~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|.+.+.. .+++.+|||+|++|++++++|..+|++.+.+.++.+++.|++.++.+++++.+++.++..++.+++
T Consensus 18 la~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (190)
T PF00227_consen 18 LAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYRFSYGRPISPEYLAKAIASLIQNYTY 97 (190)
T ss_dssp EEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHSSGTCHHHHHHHHHHHHHHHHH
T ss_pred EEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhhhccCccccchhhhhhhHHHHhhhcc
Confidence 689999996653 344579999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccceeeeEEEEEEeCCC-CeEEEECCCcceeee-eEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 79 YWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~g-p~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~ 156 (202)
+.++||+++++|++|||+++ |+||.+||+|++.++ .++|+|+|++.++++|++.|+++||++||++++++||+.+.++
T Consensus 98 ~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~~~~~~ea~~~~~~~l~~~~~~ 177 (190)
T PF00227_consen 98 RSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKPDLSLEEAIELALKALKEAIDR 177 (190)
T ss_dssp HTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTTTSSHHHHHHHHHHHHHHHHHH
T ss_pred cccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999876 999999999999999 6999999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEEE
Q 028888 157 AKDKAFELEMSWV 169 (202)
Q Consensus 157 ~~~~~~~iei~~i 169 (202)
+..++.++||++|
T Consensus 178 d~~~~~~~~v~vi 190 (190)
T PF00227_consen 178 DILSGDNIEVAVI 190 (190)
T ss_dssp BTTSTSEEEEEEE
T ss_pred CCccCCeEEEEEC
Confidence 8888899999986
No 36
>KOG0863 consensus 20S proteasome, regulatory subunit alpha type PSMA1/PRE5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-37 Score=240.48 Aligned_cols=193 Identities=23% Similarity=0.370 Sum_probs=175.7
Q ss_pred cccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhccc
Q 028888 2 GVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWW 81 (202)
Q Consensus 2 a~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~ 81 (202)
+|=+|..+.| ++.++|||+||+|++++++|+.+|++.|.+++|.+|..+++.+++++++..|...|.+.+|..||+.+
T Consensus 47 vAl~r~~seL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~~~~~r~~pv~rl~~~l~~k~q~~Tq~yg 124 (264)
T KOG0863|consen 47 VALKRAQSEL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSRFIYGRPLPVLRLVEDLGDKAQENTQRYG 124 (264)
T ss_pred eeeccchhHH--HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHhhhhhhhC
Confidence 4455666555 45679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcC--CCCCCHHHHHHHHHHHHHHhhhcc-C
Q 028888 82 LRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK--LSEMTCRQGVIEVAKIIYGVHDEA-K 158 (202)
Q Consensus 82 ~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~--~~~~s~~eai~la~~~l~~~~~~~-~ 158 (202)
.|||||.++++|+|+.||+||+++|+|.+.++++.+||+.|+.+.++||++. .++++.+|.|..++.||+..+-.+ .
T Consensus 125 rRpYGVGllv~gYDe~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr~~e~f~~~~~eELI~~gi~Alr~tlp~de~ 204 (264)
T KOG0863|consen 125 RRPYGVGLLVAGYDESGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLERNLEEFEDSSPEELIKHGIMALRETLPEDED 204 (264)
T ss_pred CccccceEEEEeecCCCceeEEEcCCccEEEEeeeecccchhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999999999999999999999999984 469999999999999999998533 7
Q ss_pred CCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 159 DKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
.+..+++|+||.++ .+|..++++++.+++.-....++.
T Consensus 205 lt~~nvsI~Ivgkd--~pf~~~d~~~~~k~~~~~~~~~~p 242 (264)
T KOG0863|consen 205 LTGENVSIAIVGKD--EPFTILDQKDVAKYVDLFKKVDEP 242 (264)
T ss_pred cccceeEEEEEeCC--CceEeecHHHHHHHHHHhhcCCCc
Confidence 78888999999986 469999999999998876665543
No 37
>KOG0175 consensus 20S proteasome, regulatory subunit beta type PSMB5/PSMB8/PRE2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=227.28 Aligned_cols=191 Identities=15% Similarity=0.146 Sum_probs=176.8
Q ss_pred CcccccCCCCCccc-CCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
+|+|+|+++|.++. .+++||.+||++.+-+++|-.+||+++.+.+..+|++|++++++.|+|...++.||+++++|+..
T Consensus 85 vAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~eLRnkeriSVsaASKllsN~~y~YkGm 164 (285)
T KOG0175|consen 85 VAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHELRNKERISVSAASKLLSNMVYQYKGM 164 (285)
T ss_pred EEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHHHhcCcceehHHHHHHHHHHHhhccCc
Confidence 58999999997665 68999999999999999999999999999999999999999999999999999999999998632
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
.+.+..+|||||+.||.||++|..|+-.+-+-.++|+|+..|+++|+..|+.+||.+||.+|++++|..+.-||..
T Consensus 165 ----GLsmGtMi~G~Dk~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eEA~~L~rrAI~hAThRDay 240 (285)
T KOG0175|consen 165 ----GLSMGTMIAGWDKKGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEEAYDLARRAIYHATHRDAY 240 (285)
T ss_pred ----chhheeeEeeccCCCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 5788999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred CCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 160 KAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
++..|.+..|+++ | +..++..++.++..++-+..++
T Consensus 241 SGG~vnlyHv~ed-G--W~~v~~~Dv~~L~~~~~e~~~~ 276 (285)
T KOG0175|consen 241 SGGVVNLYHVKED-G--WVKVSNTDVSELHYHYYEVAPP 276 (285)
T ss_pred cCceEEEEEECCc-c--ceecCCccHHHHHHHHHHhcCc
Confidence 8888999999985 5 9999999999987766555443
No 38
>KOG0179 consensus 20S proteasome, regulatory subunit beta type PSMB1/PRE7 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-32 Score=211.61 Aligned_cols=176 Identities=16% Similarity=0.218 Sum_probs=162.0
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
+|+|+|.++++ +.++..+|||+++|+++++.+|+.+|+..|...++...+.|++.++..|++..+|++|+..+|..
T Consensus 43 vA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~Y~~~h~k~ms~~s~A~lls~~LY~k--- 119 (235)
T KOG0179|consen 43 VAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQYEHDHNKKMSIHSAAQLLSTILYSK--- 119 (235)
T ss_pred EecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHhhc---
Confidence 58999999997 66788999999999999999999999999999999999999999999999999999999999764
Q ss_pred ccccceeeeEEEEEEeCCC-CeEEEECCCcceeeeeEEeeCCChHHHHHHHHhc-----C------CCCCCHHHHHHHHH
Q 028888 80 WWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL-----K------LSEMTCRQGVIEVA 147 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~g-p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~-----~------~~~~s~~eai~la~ 147 (202)
+++||++..+|+|+|+.| +.+|++||.|++.+..+.|-|+++..++++|+.. | +..+|+++|+.|+.
T Consensus 120 -RFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLDnQi~~kn~~~e~~~~~~Ls~e~ai~lv~ 198 (235)
T KOG0179|consen 120 -RFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLDNQIGHKNQNLENAERTPLSLERAIRLVK 198 (235)
T ss_pred -ccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhhhhccCcCcccccCcccccCHHHHHHHHH
Confidence 489999999999999976 9999999999999999999999999999999965 2 24589999999999
Q ss_pred HHHHHhhhccCCCCceEEEEEEEecCCCeEEEcC
Q 028888 148 KIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 181 (202)
Q Consensus 148 ~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~ 181 (202)
.+|..+.+|+..+++.++|+|++++ |...+.+|
T Consensus 199 d~F~SAaERdI~tGD~l~i~I~tk~-gV~~e~~~ 231 (235)
T KOG0179|consen 199 DAFTSAAERDIYTGDKLEICIITKD-GVEVETLP 231 (235)
T ss_pred HHhhhhhhcccccCCcEEEEEEecC-CEEEEeee
Confidence 9999999999888899999999995 76566554
No 39
>KOG0177 consensus 20S proteasome, regulatory subunit beta type PSMB2/PRE1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-32 Score=209.04 Aligned_cols=168 Identities=18% Similarity=0.235 Sum_probs=156.9
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+.+..+. +.+++.+|++.+++++.|+++|..+|+-.+.+++.+.++.|+.++|.+++|+.+|+++.+.+..+.+
T Consensus 15 lAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYkirnGyeLSp~~aahFtR~~La~~LR- 93 (200)
T KOG0177|consen 15 LASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYKIRNGYELSPSAAAHFTRRELAESLR- 93 (200)
T ss_pred EeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHhhhcCCcCCHHHHHHHHHHHHHHHHh-
Confidence 58999988875 6678899999999999999999999999999999999999999999999999999999999998864
Q ss_pred ccccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcc-
Q 028888 80 WWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA- 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~- 157 (202)
..+||.|++++||+|++ ||.||++|..|+..+.++++.|.++.+..++|++.|+|+||.+||+.+..+|+.++.+|.
T Consensus 94 -sr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~~lmkKCv~El~kRlv 172 (200)
T KOG0177|consen 94 -SRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEALDLMKKCVLELKKRLV 172 (200)
T ss_pred -cCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 37899999999999986 899999999999999999999999999999999999999999999999999999999997
Q ss_pred -CCCCceEEEEEEEec
Q 028888 158 -KDKAFELEMSWVCDE 172 (202)
Q Consensus 158 -~~~~~~iei~~i~~~ 172 (202)
+.++ +.|.+|+++
T Consensus 173 in~~~--f~v~IVdkd 186 (200)
T KOG0177|consen 173 INLPG--FIVKIVDKD 186 (200)
T ss_pred cCCCC--cEEEEEcCC
Confidence 5566 457889985
No 40
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.1e-31 Score=202.42 Aligned_cols=183 Identities=16% Similarity=0.139 Sum_probs=167.7
Q ss_pred CcccccCCCCCcccCC-cCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPGS-NRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
|++|+|.+.|.++.+. .+|+.+|.|||+||-||..+|.|.+.+.++.....|...++.++++...|+.++++.|.|+.
T Consensus 33 lGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~~q~~~~p~v~~aA~l~r~~~Y~~re- 111 (224)
T KOG0174|consen 33 LGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYTIQENKPPLVHTAASLFREICYNYRE- 111 (224)
T ss_pred EeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhCHH-
Confidence 5799999999877765 59999999999999999999999999999999999999999999999999999999998854
Q ss_pred ccccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
-+...+|+||||+. |.++|.+--.|+..+-+++.-|+||.++++|++.+|+++||+||++.++.+++..+..+|+
T Consensus 112 ----~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~EE~~~fvk~Av~lAi~rDG 187 (224)
T KOG0174|consen 112 ----MLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTLEECVRFVKNAVSLAIERDG 187 (224)
T ss_pred ----hhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 37899999999985 8999999666777677788889999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEEEecCCCeEEEcCHHHHHHHH
Q 028888 159 DKAFELEMSWVCDESNRQHQKVPDELLEEAK 189 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~ 189 (202)
.++..|.+.+|+++ |..+++++.+++..+-
T Consensus 188 sSGGviR~~~I~~~-Gver~~~~~d~~~~~~ 217 (224)
T KOG0174|consen 188 SSGGVIRLVIINKA-GVERRFFPGDKLGQFA 217 (224)
T ss_pred CCCCEEEEEEEccC-CceEEEecCCcccccc
Confidence 89999999999995 8889999988876654
No 41
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-30 Score=202.69 Aligned_cols=171 Identities=19% Similarity=0.216 Sum_probs=157.7
Q ss_pred CcccccCCCCCcccC-CcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
|++|+|++.|.++.+ ++.||+.|.++|+||.+|-.+|...+.+.+..+..++++..++++.+-...+++.+++..|..
T Consensus 51 lgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~l~t~R~~rVv~A~~mlkQ~LFrYqG- 129 (271)
T KOG0173|consen 51 LGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHRLNTGRKPRVVTALRMLKQHLFRYQG- 129 (271)
T ss_pred EeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHHhccCCCCceeeHHHHHHHHHHHhcC-
Confidence 689999999998876 569999999999999999999999999999999999999999999999999999999988864
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
-.|..+||+|+|..||+||.+-|.|+...-+|.++|+|+..+++.||.+|+++|++|||++|+.+|+...+-.|-.
T Consensus 130 ----~IgA~LiiGGvD~TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~dlt~eea~~Lv~eAi~AGi~nDLg 205 (271)
T KOG0173|consen 130 ----HIGAALILGGVDPTGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKPDLTKEEAIKLVCEAIAAGIFNDLG 205 (271)
T ss_pred ----cccceeEEccccCCCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCcccCHHHHHHHHHHHHHhhhccccC
Confidence 3789999999999999999999999999999999999999999999999999999999999999999999866655
Q ss_pred CCceEEEEEEEecCCCeE
Q 028888 160 KAFELEMSWVCDESNRQH 177 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~ 177 (202)
++.+|.+++|++ ++..|
T Consensus 206 SGsnvdlcVI~~-~~~~~ 222 (271)
T KOG0173|consen 206 SGSNVDLCVITK-KGVEY 222 (271)
T ss_pred CCCceeEEEEeC-CCccc
Confidence 677899999996 35444
No 42
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.96 E-value=1.5e-27 Score=181.77 Aligned_cols=148 Identities=32% Similarity=0.457 Sum_probs=142.2
Q ss_pred CcccccCCCCCcc-cCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|++.+.++.. .....||++++++++++++|..+|++.+.+.++.+++.|++.++.++++..+++.+++.++.+++
T Consensus 14 la~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (164)
T cd01901 14 LAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYRLRYGEPISVVALAKELAKLLQVYTQ- 92 (164)
T ss_pred EEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcC-
Confidence 5889999999877 57789999999999999999999999999999999999999999999999999999999999986
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeee-eEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIY 151 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~ 151 (202)
.||+++++||+|+|+++|+||.+||.|++..+ .++++|+++..+.++|++.|+++|+.+++++++.+||.
T Consensus 93 --~~p~~~~~iiag~~~~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 163 (164)
T cd01901 93 --GRPFGVNLIVAGVDEGGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAVELALKALK 163 (164)
T ss_pred --CCCcceEEEEEEEcCCCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 79999999999999888999999999999999 99999999999999999999999999999999999985
No 43
>KOG0180 consensus 20S proteasome, regulatory subunit beta type PSMB3/PUP3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.4e-28 Score=181.42 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=157.6
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|....+ .++.+.+|||+|.|++++|.+|+..|++++.++++..-.+|+++.++.|.|+.+++++|.++|+.+
T Consensus 22 Ia~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~lre~R~i~P~~~s~mvS~~lYekR-- 99 (204)
T KOG0180|consen 22 IASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYELREEREIKPETFSSMVSSLLYEKR-- 99 (204)
T ss_pred EEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHHhhhhcccCcHHHHHHHHHHHHHhh--
Confidence 58999999876 445667999999999999999999999999999999999999999999999999999999998864
Q ss_pred ccccceeeeEEEEEEeCC-CCeEEEECCCcceee-eeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 80 WWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYR-YFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
+.||.+..++||+|++ .|.++.+|..|+... .++.+.|+++...++++|..|+|||..++.++.+.++|..+.+|+
T Consensus 100 --fgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd~LFetisQa~Lna~DRD 177 (204)
T KOG0180|consen 100 --FGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPDELFETISQALLNAVDRD 177 (204)
T ss_pred --cCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhHhhhh
Confidence 7899999999999986 599999999999986 589999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEec
Q 028888 158 KDKAFELEMSWVCDE 172 (202)
Q Consensus 158 ~~~~~~iei~~i~~~ 172 (202)
..+++...|.+|+++
T Consensus 178 alSGwGa~vyiI~kd 192 (204)
T KOG0180|consen 178 ALSGWGAVVYIITKD 192 (204)
T ss_pred hhccCCeEEEEEccc
Confidence 999999889999985
No 44
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=99.95 E-value=1.1e-26 Score=180.67 Aligned_cols=151 Identities=14% Similarity=0.152 Sum_probs=126.6
Q ss_pred CcccccCCCCCccc-CCcCceEEe-cCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|++.|.++. ++.+||++| +++++|+++|..+|++.|.+.++.+++.|+. +. ++.+++.+..+ ..+
T Consensus 15 laaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~~--~~---~~~~a~l~~~l-~~~-- 86 (172)
T PRK05456 15 IAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQG--NL---LRAAVELAKDW-RTD-- 86 (172)
T ss_pred EEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHccC--cc---HHHHHHHHHHH-Hhc--
Confidence 68999999986554 678999999 9999999999999999999999999999982 22 46666554333 222
Q ss_pred cccccceeeeEEEEEEeCCCCeEEEECCCcceeee--eEEeeCCChHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhhh
Q 028888 79 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIEKLKL-SEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~-~~~s~~eai~la~~~l~~~~~ 155 (202)
...+|+.+++|++ |. |+||.+||.|++.+. ++.|+|+|+.+++++|+++|+ ++| ||++|+++|++.+.+
T Consensus 87 -~~~~~l~~~~lv~--d~--~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m---eA~~la~kai~~A~~ 158 (172)
T PRK05456 87 -RYLRRLEAMLIVA--DK--EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL---SAEEIAEKALKIAAD 158 (172)
T ss_pred -cCCCccEEEEEEE--cC--CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---CHHHHHHHHHHHHHH
Confidence 2246888999994 33 799999999999766 799999999999999999999 999 999999999999999
Q ss_pred ccCCCCceEEEE
Q 028888 156 EAKDKAFELEMS 167 (202)
Q Consensus 156 ~~~~~~~~iei~ 167 (202)
|+..++.+++|-
T Consensus 159 Rd~~sg~~i~v~ 170 (172)
T PRK05456 159 ICIYTNHNITIE 170 (172)
T ss_pred hCeeCCCcEEEE
Confidence 987777666553
No 45
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=99.94 E-value=3e-26 Score=177.17 Aligned_cols=150 Identities=13% Similarity=0.071 Sum_probs=125.0
Q ss_pred CcccccCCCCCccc-CCcCceEEecC-cEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSVHR-HSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|++.|.++. ++.+||++|++ |++|+++|..+|++.|.+.++.+++.|+.+.++ .+++.+..+ ..+
T Consensus 14 laaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~~~~~~-----~aa~l~~~l-~~~-- 85 (171)
T cd01913 14 IAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYPGNLLR-----AAVELAKDW-RTD-- 85 (171)
T ss_pred EEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhhchHHH-----HHHHHHHHH-Hhc--
Confidence 68999999997554 66899999999 999999999999999999999999999988774 444443333 222
Q ss_pred ccccccee-eeEEEEEEeCCCCeEEEECCCcceeeee--EEeeCCChHHHHHHHHhcCCCC-CCHHHHHHHHHHHHHHhh
Q 028888 79 YWWLRPFG-CGVILGGYDRDGPQLYMIEPSGISYRYF--GAAIGKGRQAAKTEIEKLKLSE-MTCRQGVIEVAKIIYGVH 154 (202)
Q Consensus 79 ~~~~rP~~-~~~iiaG~D~~gp~Ly~~d~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~~~-~s~~eai~la~~~l~~~~ 154 (202)
+.+|+. +.++++++ ++||.+||.|++.+.+ +.++|+|+.+++++||.+|+++ || +.++|+++++.+.
T Consensus 86 --~~~~~l~a~~iv~~~----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms---~~~la~~Av~~A~ 156 (171)
T cd01913 86 --RYLRRLEAMLIVADK----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS---AEEIARKALKIAA 156 (171)
T ss_pred --cCcCceEEEEEEeCC----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---HHHHHHHHHHHHH
Confidence 234555 66666544 4999999999999984 9999999999999999999995 99 6699999999999
Q ss_pred hccCCCCceEEEE
Q 028888 155 DEAKDKAFELEMS 167 (202)
Q Consensus 155 ~~~~~~~~~iei~ 167 (202)
+++..++.+|.|-
T Consensus 157 ~rd~~tg~~i~~~ 169 (171)
T cd01913 157 DICIYTNHNITVE 169 (171)
T ss_pred hhCcccCCCEEEE
Confidence 9998888877653
No 46
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=99.93 E-value=3e-25 Score=171.62 Aligned_cols=151 Identities=14% Similarity=0.153 Sum_probs=123.7
Q ss_pred CcccccCCCCCccc-CCcCceEEe-cCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|++.|.++. ++.+||++| ++|++|+.+|..+|++.|.+.++.+++.|+... .+.+++.++++ ..|
T Consensus 14 laaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~~~~-----~~~~a~l~~~~-~~~-- 85 (171)
T TIGR03692 14 IAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQGNL-----TRAAVELAKDW-RTD-- 85 (171)
T ss_pred EEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHccCch-----HHHHHHHHHHH-hhc--
Confidence 68999999996554 668999999 599999999999999999999999999988643 36666665552 112
Q ss_pred cccccceeeeEEEEEEeCCCCeEEEECCCcceeee--eEEeeCCChHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHhhh
Q 028888 79 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIEKLK-LSEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~-~~~~s~~eai~la~~~l~~~~~ 155 (202)
...+.+.+.++++|| ++||.+||.|++.+. ++.++|+|+.+++++||.+| +++|+ |+++|+++++.+.+
T Consensus 86 -~~~~~l~a~~iv~~~----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s---a~~la~~Av~~A~~ 157 (171)
T TIGR03692 86 -RYLRRLEAMLIVADK----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS---AEEIAREALKIAAD 157 (171)
T ss_pred -ccccccEEEEEEEcC----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---HHHHHHHHHHHHHh
Confidence 112234467776644 499999999999996 59999999999999999999 57777 99999999999999
Q ss_pred ccCCCCceEEEE
Q 028888 156 EAKDKAFELEMS 167 (202)
Q Consensus 156 ~~~~~~~~iei~ 167 (202)
++..++.+|.|-
T Consensus 158 rd~~sg~~i~v~ 169 (171)
T TIGR03692 158 ICIYTNHNITIE 169 (171)
T ss_pred hCccCCCCEEEE
Confidence 998888777653
No 47
>KOG0185 consensus 20S proteasome, regulatory subunit beta type PSMB4/PRE4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.6e-25 Score=176.19 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=163.2
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhH-HHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYE-SVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~-~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||||+..+.|. ....+++|||++++|+++|+||..+|.|.|.+.+........ +..|+.+.|+.+.++|+..||. +
T Consensus 55 iaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~~~Dg~~l~Pk~ih~yltrvlY~--r 132 (256)
T KOG0185|consen 55 IAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNRLDDGQSLGPKAIHSYLTRVLYA--R 132 (256)
T ss_pred EEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccccccccccChHHHHHHHHHHHHH--h
Confidence 68999999985 555889999999999999999999999999999998777654 6777999999999999999955 5
Q ss_pred cccccceeeeEEEEEEeCCC-CeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHhh
Q 028888 79 YWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKL---SEMTCRQGVIEVAKIIYGVH 154 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~g-p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~---~~~s~~eai~la~~~l~~~~ 154 (202)
++.+.|++.+++++|+|++| |.|-++|-.|...+.+..|+|.|...++++|++.|. ++++.+||.+++.+|++...
T Consensus 133 RsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k~~~~s~eeA~~li~~cMrVL~ 212 (256)
T KOG0185|consen 133 RSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKKGEDLSREEAEALIEKCMRVLY 212 (256)
T ss_pred hhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhccchhhHHHHHHHHHHHHHHHHh
Confidence 67899999999999999965 999999999999999999999999999999999985 67999999999999999999
Q ss_pred hccCCCCceEEEEEEEecCC----CeEEEcCHHHHHHHH
Q 028888 155 DEAKDKAFELEMSWVCDESN----RQHQKVPDELLEEAK 189 (202)
Q Consensus 155 ~~~~~~~~~iei~~i~~~~~----~~~~~l~~~~i~~~~ 189 (202)
-||.....+++|++|+++ | +++++-..+++.+..
T Consensus 213 YRD~ra~n~fqva~v~~e-Gv~i~~p~qv~~~W~fa~~~ 250 (256)
T KOG0185|consen 213 YRDARASNEFQVATVDEE-GVTISKPYQVKTNWDFAETI 250 (256)
T ss_pred ccccccccceEEEEEccc-ceEecCceeeeecchhhhhc
Confidence 887666667899999984 5 345555666665543
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=6e-06 Score=62.57 Aligned_cols=152 Identities=16% Similarity=0.177 Sum_probs=96.5
Q ss_pred CcccccCCCCC-cccCCcCceEEe-cCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|-..|-|. +.+.+..|+-+| +.++..|++|..+|+..|.+.+...++.|. |. ....+..++.-.+.
T Consensus 18 iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~---g~---L~raavelaKdwr~--- 88 (178)
T COG5405 18 IAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ---GD---LFRAAVELAKDWRT--- 88 (178)
T ss_pred EecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc---Cc---HHHHHHHHHHhhhh---
Confidence 46777788775 455555444444 559999999999999999999999998874 11 11122222222211
Q ss_pred cccccceeeeEEEEEEeCCCCeEEEECCCcceee--eeEEeeCCChHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHhhh
Q 028888 79 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYR--YFGAAIGKGRQAAKTEIEKLK-LSEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~--~~~~a~G~gs~~~~~~Le~~~-~~~~s~~eai~la~~~l~~~~~ 155 (202)
-...|-+-.-++++ | .-.+|-+-..|...+ ....|||||..+++.-....+ ++++| |.+++.++|..+-+
T Consensus 89 Dk~lr~LEAmllVa--d--~~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls---A~eIa~~sl~iA~e 161 (178)
T COG5405 89 DKYLRKLEAMLLVA--D--KTHILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS---AREIAEKSLKIAGD 161 (178)
T ss_pred hhHHHHHhhheeEe--C--CCcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC---HHHHHHHHHhhhhe
Confidence 11233455555554 2 245666666777665 248999999999998766665 34555 66778888877765
Q ss_pred ccCCCCceEEEEE
Q 028888 156 EAKDKAFELEMSW 168 (202)
Q Consensus 156 ~~~~~~~~iei~~ 168 (202)
-..+++.++.|-.
T Consensus 162 iciyTN~ni~ve~ 174 (178)
T COG5405 162 ICIYTNHNIVVEE 174 (178)
T ss_pred EEEecCCcEEEEE
Confidence 4345555555443
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0012 Score=52.14 Aligned_cols=170 Identities=13% Similarity=0.086 Sum_probs=113.7
Q ss_pred cccccCCCCCcccCCcCceEEec---Cc-EEEEEecchhhHHHHHHHHHHHHHHhHHHhCC-CCCHHHHHHHHHHHHHHh
Q 028888 2 GVEKLIASKMMLPGSNRRIHSVH---RH-SGMAVAGLAADGRQIVTRAKSEATNYESVYGE-PIPVKELAQRVASYVHLC 76 (202)
Q Consensus 2 a~d~r~~~~l~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~-~i~~~~la~~ls~~~~~~ 76 (202)
++|+|...|.=-.++.+|+|... ++ ++++.+|..+-.|.+++.+.+..+...-..-. -.++-..+..+.....+-
T Consensus 16 ~sDsRTNAGvD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~~~~L~n~~sm~eattlvgetvrEv 95 (255)
T COG3484 16 GSDSRTNAGVDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDDGDSLLNIPSMYEATTLVGETVREV 95 (255)
T ss_pred ecccccccCchHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 67888888763334556665543 33 46788999999999999998777633222212 234555666666655443
Q ss_pred hhcc------cccceeeeEEEEEEeCCC-CeEEEECCCcceee----eeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHH
Q 028888 77 TLYW------WLRPFGCGVILGGYDRDG-PQLYMIEPSGISYR----YFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIE 145 (202)
Q Consensus 77 ~~~~------~~rP~~~~~iiaG~D~~g-p~Ly~~d~~G~~~~----~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~l 145 (202)
..+. ..--|.|++|++|.=.++ |.||.+=|-|++.+ ..+.-+|.. ..-+++|++.+.-+++++|+.+.
T Consensus 96 ~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiGEt-KYGKPildR~i~~~~pLeea~kc 174 (255)
T COG3484 96 QARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIGET-KYGKPILDRTITYDTPLEEAAKC 174 (255)
T ss_pred HhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcccc-ccCchhhhhhhhccCCHHHHhhh
Confidence 2111 113588999999986655 89999999999986 357778854 34578999999999999999999
Q ss_pred HHHHHHHhhhccCCCCceEEEEEEEec
Q 028888 146 VAKIIYGVHDEAKDKAFELEMSWVCDE 172 (202)
Q Consensus 146 a~~~l~~~~~~~~~~~~~iei~~i~~~ 172 (202)
++-.+..-.+.+-+-+-.+.+-+..++
T Consensus 175 aLvS~DSTlkSNiSVGlPldLl~~e~d 201 (255)
T COG3484 175 ALVSFDSTLKSNISVGLPLDLLVYEAD 201 (255)
T ss_pred eEEecchhhhccccccCCceeEEEecc
Confidence 887776665543222223444544443
No 50
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=84.23 E-value=3.2 Score=34.04 Aligned_cols=67 Identities=9% Similarity=0.089 Sum_probs=46.4
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHH
Q 028888 123 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKA 190 (202)
Q Consensus 123 ~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~ 190 (202)
+.+..+|..+|.+.++++++.++...+|..+......-+.+..+..+++.-.. +..|-.++|+.+.+
T Consensus 132 e~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~-~~rl~kkDie~L~k 198 (293)
T COG4079 132 EVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDP-VLRLVKKDIETLRK 198 (293)
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCH-HHHHHHHHHHHHHH
Confidence 45668899999999999999999888888887443333334667777764332 44454577776544
No 51
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=81.41 E-value=3 Score=31.01 Aligned_cols=82 Identities=11% Similarity=0.091 Sum_probs=60.6
Q ss_pred EEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeEEEcC
Q 028888 102 YMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVP 181 (202)
Q Consensus 102 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~ 181 (202)
..+|-+|.+...++-..|-||..+-+-+-..|-..+|++|+..+--. .+.+.+.+.+-.+ ..-.|.
T Consensus 71 Ikvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kIkNt---eIAKeL~LPPVKL-----------HCSMLA 136 (157)
T KOG3361|consen 71 IKVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKIKNT---EIAKELSLPPVKL-----------HCSMLA 136 (157)
T ss_pred EEECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhcccH---HHHHhccCCchhh-----------hhHHHH
Confidence 56888999999999999999999999999999999999999876322 2223334444111 134578
Q ss_pred HHHHHHHHHHHHHhhh
Q 028888 182 DELLEEAKAAARAALE 197 (202)
Q Consensus 182 ~~~i~~~~~~~~~~~~ 197 (202)
++.|...+..+.++-.
T Consensus 137 EDAIKaAikdyk~Kq~ 152 (157)
T KOG3361|consen 137 EDAIKAAIKDYKEKQN 152 (157)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8899988887776543
No 52
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=79.10 E-value=8.9 Score=30.34 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEE
Q 028888 123 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVC 170 (202)
Q Consensus 123 ~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~ 170 (202)
+.|...|.++|++.|+++++..+...+|..+......-+...++...+
T Consensus 131 ~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~ 178 (194)
T PF09894_consen 131 EIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITT 178 (194)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEec
Confidence 667788999999999999999999999999965532222234455444
No 53
>PRK08868 flagellar protein FlaG; Provisional
Probab=77.81 E-value=17 Score=27.48 Aligned_cols=54 Identities=9% Similarity=0.097 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhcc----CCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHH
Q 028888 141 QGVIEVAKIIYGVHDEA----KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 194 (202)
Q Consensus 141 eai~la~~~l~~~~~~~----~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~ 194 (202)
++++-+-+.+......+ ......+-|.+|+++||..+|.+|.+++-.+.++..+
T Consensus 75 ~aVeklNe~~~~~n~~L~F~vdeetgr~VVkViD~~T~EVIRQIP~Ee~L~la~~l~e 132 (144)
T PRK08868 75 KMVEQMNEFVKSINKGLSFRVDEESGRDVVTIYEASTGDIIRQIPDEEMLEVLRRLAE 132 (144)
T ss_pred HHHHHHHHHHHhhcCceEEEEecCCCCEEEEEEECCCCceeeeCCCHHHHHHHHHHHH
Confidence 45555455555443222 1122234588899999999999999999888877654
No 54
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=75.00 E-value=11 Score=26.61 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=25.2
Q ss_pred eEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHh
Q 028888 163 ELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 195 (202)
Q Consensus 163 ~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~ 195 (202)
.+-|.+++++||..+|.+|.+++-.+..+...+
T Consensus 67 ~~vVkViD~~T~eVIRqIP~Ee~l~l~~~l~e~ 99 (107)
T PF03646_consen 67 RVVVKVIDKETGEVIRQIPPEELLDLAKRLREL 99 (107)
T ss_dssp EEEEEEEETTT-SEEEEE-HHHHHHHHHHHHHH
T ss_pred cEEEEEEECCCCcEEEeCCcHHHHHHHHHHHHH
Confidence 366888999999999999999998887766543
No 55
>PRK07738 flagellar protein FlaG; Provisional
Probab=72.31 E-value=27 Score=25.37 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=27.2
Q ss_pred eEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHh
Q 028888 163 ELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 195 (202)
Q Consensus 163 ~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~ 195 (202)
.+-|.+|+++||..+|.+|.+++-.++.+...+
T Consensus 76 ~~vVkVvD~~T~EVIRQIPpEe~L~l~~~m~e~ 108 (117)
T PRK07738 76 EYYVQVVDERTNEVIREIPPKKLLDMYAAMMEF 108 (117)
T ss_pred cEEEEEEECCCCeeeeeCCCHHHHHHHHHHHHH
Confidence 466888999999999999999998887766543
No 56
>PRK08452 flagellar protein FlaG; Provisional
Probab=71.66 E-value=31 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=26.5
Q ss_pred eEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHh
Q 028888 163 ELEMSWVCDESNRQHQKVPDELLEEAKAAARAA 195 (202)
Q Consensus 163 ~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~ 195 (202)
.+-|.++..+||...|.+|.+++-.+..+..++
T Consensus 83 ~~vVkVvD~~T~eVIRqIP~Ee~L~l~~~m~e~ 115 (124)
T PRK08452 83 GLVVSVKEANGGKVIREIPSKEAIELMEYMRDV 115 (124)
T ss_pred cEEEEEEECCCCceeeeCCCHHHHHHHHHHHHh
Confidence 355788999999999999999998877765543
No 57
>PF14804 Jag_N: Jag N-terminus; PDB: 3GKU_B.
Probab=58.08 E-value=18 Score=22.32 Aligned_cols=34 Identities=15% Similarity=0.031 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeE
Q 028888 137 MTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQH 177 (202)
Q Consensus 137 ~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~ 177 (202)
-|++||++.|.+-|.. ....+++-+|.+.+++.|
T Consensus 5 kt~eeAi~~A~~~l~~-------~~~~~~~eVi~~g~kGf~ 38 (52)
T PF14804_consen 5 KTVEEAIEKALKELGV-------PREELEYEVIEEGKKGFF 38 (52)
T ss_dssp SSHHHHHHHHHHHTT---------GGGEEEEEEE--B----
T ss_pred CCHHHHHHHHHHHhCC-------ChHHEEEEEEEcCCCcEE
Confidence 4788998887777633 334477777886434333
No 58
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=57.90 E-value=59 Score=23.79 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhhcc--------CCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHH
Q 028888 141 QGVIEVAKIIYGVHDEA--------KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 194 (202)
Q Consensus 141 eai~la~~~l~~~~~~~--------~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~ 194 (202)
|.+.++.+=|....+.+ ...-..+=|.++.++||...|.+|++++=++..+...
T Consensus 49 e~L~~~v~~ink~~k~~nt~l~F~~dd~lg~~vVkI~d~~TgeVIRqIPpee~L~l~~r~~d 110 (120)
T COG1334 49 EKLALIVEDINKLLKSLNTHLNFSYDDELGELVVKIIDKDTGEVIRQIPPEEALELAARMRD 110 (120)
T ss_pred HHHHHHHHHHHHHHHhhcCceEEEEecccCcEEEEEEECCCCcchhhCChHHHHHHHHHHHH
Confidence 34555555555555442 1122235578899999999999999998777766543
No 59
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=50.60 E-value=11 Score=22.54 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=23.5
Q ss_pred eeCCChHHHHHHHHhcC-CCCCCHHHHHHHHHH
Q 028888 117 AIGKGRQAAKTEIEKLK-LSEMTCRQGVIEVAK 148 (202)
Q Consensus 117 a~G~gs~~~~~~Le~~~-~~~~s~~eai~la~~ 148 (202)
+.|.....+...+.+.. .++++.++.|..+++
T Consensus 12 ~LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk 44 (47)
T PF07499_consen 12 SLGYSKAEAQKAVSKLLEKPGMDVEELIKQALK 44 (47)
T ss_dssp HTTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHC
T ss_pred HcCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHh
Confidence 45888888888887776 889999998877654
No 60
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins. CodY has been found to repress the dipeptide transport operon (dpp) of Bacillus subtilis in nutrient-rich conditions []. The CodY protein also has a repressor effect on many genes in Lactococcus lactis during growth in milk [].; GO: 0003677 DNA binding, 0005525 GTP binding; PDB: 2HGV_A 2GX5_D 2B0L_C 2B18_A.
Probab=48.65 E-value=1.3e+02 Score=23.54 Aligned_cols=70 Identities=13% Similarity=0.246 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCC
Q 028888 41 IVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGK 120 (202)
Q Consensus 41 l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~ 120 (202)
|.++.|..-+.-+...+.+++-+.+|..|++.+.. .+|-++..|.+..|... .+.
T Consensus 2 LLeKtRkIN~lLQ~~~~~~v~F~~ia~vL~dvl~a------------------------NvyIis~kGkiLGy~~~-~~~ 56 (177)
T PF06018_consen 2 LLEKTRKINRLLQKSAGEPVDFNDIAEVLSDVLEA------------------------NVYIISRKGKILGYSFI-DDF 56 (177)
T ss_dssp HHHHHHHHHHHHHSHTTSS--HHHHHHHHHHHHTS------------------------EEEEEETTSBEEEEE-S-S--
T ss_pred hHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhcC------------------------cEEEEeCCccEEEEecc-CCC
Confidence 56777777666666688999999999999998843 34555677777665433 555
Q ss_pred ChHHHHHHHHhcCCC
Q 028888 121 GRQAAKTEIEKLKLS 135 (202)
Q Consensus 121 gs~~~~~~Le~~~~~ 135 (202)
....+..+++....|
T Consensus 57 ~~~~~~~~~~~~~fp 71 (177)
T PF06018_consen 57 ECDRMEEMLEEKRFP 71 (177)
T ss_dssp --HHHHHHHHHTB--
T ss_pred CcHHHHHHHhcCcCC
Confidence 566666677766544
No 61
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=43.69 E-value=36 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHHHHHhhhcccccceeeeEEEEEEe
Q 028888 59 PIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYD 95 (202)
Q Consensus 59 ~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~iiaG~D 95 (202)
.-+|++++..++.+++.|+++++.+.+ +|+|+.
T Consensus 44 ~rtP~~~a~Dl~~~i~~y~~~w~~~~v----vLiGYS 76 (192)
T PF06057_consen 44 ERTPEQTAADLARIIRHYRARWGRKRV----VLIGYS 76 (192)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhCCceE----EEEeec
Confidence 458899999999999999988776554 788885
No 62
>PF05593 RHS_repeat: RHS Repeat; InterPro: IPR006530 These sequences contain two tandem copies of a 21-residue extracellular repeat that is found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin [, , ].
Probab=38.39 E-value=48 Score=18.53 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=12.9
Q ss_pred CCCCeEEEECCCcceeeeeEEeeCC
Q 028888 96 RDGPQLYMIEPSGISYRYFGAAIGK 120 (202)
Q Consensus 96 ~~gp~Ly~~d~~G~~~~~~~~a~G~ 120 (202)
..|--+=.+||.|....|.+-+.|.
T Consensus 3 ~~G~l~~~~d~~G~~~~y~YD~~g~ 27 (38)
T PF05593_consen 3 ANGRLTSVTDPDGRTTRYTYDAAGR 27 (38)
T ss_pred CCCCEEEEEcCCCCEEEEEECCCCC
Confidence 3333344456666666555555553
No 63
>COG3140 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.24 E-value=69 Score=20.02 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 123 QAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 123 ~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
+.+..-+.+...+.||--|||.++...|+.-+..+
T Consensus 14 Q~AVE~Iq~lMaeGmSsGEAIa~VA~elRe~hk~~ 48 (60)
T COG3140 14 QKAVERIQELMAEGMSSGEAIALVAQELRENHKGE 48 (60)
T ss_pred HHHHHHHHHHHHccccchhHHHHHHHHHHHHhccc
Confidence 34445555556789999999999999999887654
No 64
>PRK09570 rpoH DNA-directed RNA polymerase subunit H; Reviewed
Probab=32.19 E-value=39 Score=22.82 Aligned_cols=24 Identities=13% Similarity=0.116 Sum_probs=20.3
Q ss_pred CeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 175 RQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 175 ~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
+++..|+++|.+++|+++...+++
T Consensus 13 PkH~iLs~eE~~~lL~~y~i~~~q 36 (79)
T PRK09570 13 PEHEILSEEEAKKLLKEYGIKPEQ 36 (79)
T ss_pred CCeEECCHHHHHHHHHHcCCCHHH
Confidence 469999999999999998766654
No 65
>PRK04158 transcriptional repressor CodY; Validated
Probab=31.37 E-value=3.1e+02 Score=22.83 Aligned_cols=71 Identities=13% Similarity=0.273 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeC
Q 028888 40 QIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIG 119 (202)
Q Consensus 40 ~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G 119 (202)
.|.++.|..-..-+...+.+++...+|..|++.+.. .+|-++..|....|... .+
T Consensus 3 ~LL~ktR~in~~lq~~~~~~v~f~~~a~~L~~~l~~------------------------nvyii~~~GkiLGy~~~-~~ 57 (256)
T PRK04158 3 SLLEKTRKINRLLQKSAGEPVDFNEMAEVLSDVIDC------------------------NVYIVSRKGKILGYSMK-EK 57 (256)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhhCC------------------------CEEEEeCCCcEEEEecc-cc
Confidence 477788877777777789999999999999987732 23555667776665333 44
Q ss_pred CChHHHHHHHHhcCCC
Q 028888 120 KGRQAAKTEIEKLKLS 135 (202)
Q Consensus 120 ~gs~~~~~~Le~~~~~ 135 (202)
.....+..+++..+.|
T Consensus 58 ~~~~~i~~~~~~~~fp 73 (256)
T PRK04158 58 IENDRVEQMLEERQFP 73 (256)
T ss_pred CccHHHHHHHHcCcCC
Confidence 4444666777655444
No 66
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=30.52 E-value=1.2e+02 Score=21.58 Aligned_cols=46 Identities=11% Similarity=0.069 Sum_probs=29.1
Q ss_pred ecchhhHHHHHHHHHHHHHHh--HHHh-CC-------CCCHHHHHHHHHHHHHHhh
Q 028888 32 AGLAADGRQIVTRAKSEATNY--ESVY-GE-------PIPVKELAQRVASYVHLCT 77 (202)
Q Consensus 32 sG~~~D~~~l~~~~r~~~~~~--~~~~-~~-------~i~~~~la~~ls~~~~~~~ 77 (202)
.|+.-|+..+.+.++..+..+ ++.+ .. .+|++.+|.+|.+.+....
T Consensus 43 ~g~v~DF~~lk~~~~~i~~~lDh~~Ln~~~~~~~~~~~pT~E~lA~~i~~~l~~~l 98 (123)
T PF01242_consen 43 DGMVVDFGDLKKIIKEIDDQLDHKFLNEDDPEFDDINNPTAENLARWIFERLKEKL 98 (123)
T ss_dssp TSSSS-HHHHHHHHHHHHHHHTTEEGGHHSGCGCSSTS--HHHHHHHHHHHHHHHH
T ss_pred CCEEEEHHHHHHHHHHHHHHhCcccccCCChhhhccCCCCHHHHHHHHHHHHHHHh
Confidence 366778888888888755543 2222 01 2789999999999887754
No 67
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=30.42 E-value=1.1e+02 Score=19.68 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHHHhCCCCCHHHHHHHHHH
Q 028888 42 VTRAKSEATNYESVYGEPIPVKELAQRVAS 71 (202)
Q Consensus 42 ~~~~r~~~~~~~~~~~~~i~~~~la~~ls~ 71 (202)
++.+++.......+.|+.++.+.+|..+.-
T Consensus 3 l~~i~~a~~~L~~~lgr~Pt~eEiA~~lgi 32 (78)
T PF04539_consen 3 LRKIERARRELEQELGREPTDEEIAEELGI 32 (78)
T ss_dssp HHHHHHHHHHHHHHHSS--BHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHcc
Confidence 455666666777789999999999997543
No 68
>TIGR01643 YD_repeat_2x YD repeat (two copies). This model describes two tandem copies of a 21-residue extracellular repeat found in Gram-negative, Gram-positive, and animal proteins. The repeat is named for a YD dipeptide, the most strongly conserved motif of the repeat. These repeats appear in general to be involved in binding carbohydrate; the chicken teneurin-1 YD-repeat region has been shown to bind heparin.
Probab=29.86 E-value=77 Score=17.70 Aligned_cols=10 Identities=30% Similarity=0.700 Sum_probs=3.7
Q ss_pred ECCCcceeee
Q 028888 104 IEPSGISYRY 113 (202)
Q Consensus 104 ~d~~G~~~~~ 113 (202)
+||.|....+
T Consensus 11 ~~p~G~~~~~ 20 (42)
T TIGR01643 11 TDADGTTTRY 20 (42)
T ss_pred ECCCCCEEEE
Confidence 3333333333
No 69
>PF01191 RNA_pol_Rpb5_C: RNA polymerase Rpb5, C-terminal domain; InterPro: IPR000783 Prokaryotes contain a single DNA-dependent RNA polymerase (RNAP; 2.7.7.6 from EC) that is responsible for the transcription of all genes, while eukaryotes have three classes of RNAPs (I-III) that transcribe different sets of genes. Each class of RNA polymerase is an assemblage of ten to twelve different polypeptides. Certain subunits of RNAPs, including RPB5 (POLR2E in mammals), are common to all three eukaryotic polymerases. RPB5 plays a role in the transcription activation process. Eukaryotic RPB5 has a bipartite structure consisting of a unique N-terminal region (IPR005571 from INTERPRO), plus a C-terminal region that is structurally homologous to the prokaryotic RPB5 homologue, subunit H (gene rpoH) [, , , ]. This entry represents prokaryotic subunit H and the C-terminal domain of eukaryotic RPB5, which share a two-layer alpha/beta fold, with a core structure of beta/alpha/beta/alpha/beta(2). ; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 1EIK_A 2Y0S_Z 1DZF_A 3GTG_E 2VUM_E 3GTP_E 3GTO_E 3S17_E 3S1R_E 1I3Q_E ....
Probab=29.71 E-value=41 Score=22.38 Aligned_cols=23 Identities=17% Similarity=0.128 Sum_probs=16.5
Q ss_pred CeEEEcCHHHHHHHHHHHHHhhh
Q 028888 175 RQHQKVPDELLEEAKAAARAALE 197 (202)
Q Consensus 175 ~~~~~l~~~~i~~~~~~~~~~~~ 197 (202)
.++..|+++|.+++++++...++
T Consensus 10 PkH~ils~eE~~~lL~~y~i~~~ 32 (74)
T PF01191_consen 10 PKHEILSEEEKKELLKKYNIKPE 32 (74)
T ss_dssp -EEEEE-HHHHHHHHHHTT--TT
T ss_pred CCeEEcCHHHHHHHHHHhCCChh
Confidence 46999999999999998866544
No 70
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=29.39 E-value=1.3e+02 Score=18.14 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=24.0
Q ss_pred EEECCCcceeeeeEEeeCCChHHHHHHHHhc
Q 028888 102 YMIEPSGISYRYFGAAIGKGRQAAKTEIEKL 132 (202)
Q Consensus 102 y~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~ 132 (202)
|.+.|.|.....--...|.....+-..||+.
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~ 33 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEA 33 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHH
Confidence 6789999998877777888877777766654
No 71
>PHA03324 nuclear egress membrane protein UL34; Provisional
Probab=27.25 E-value=88 Score=25.34 Aligned_cols=92 Identities=14% Similarity=0.221 Sum_probs=57.3
Q ss_pred CceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcccccceeeeEEEEEEeCC
Q 028888 18 RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD 97 (202)
Q Consensus 18 ~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~iiaG~D~~ 97 (202)
-.+.-|-||.-++-+| |...|.-++ .|-++|++++-+.+++.++.-.-+-+..--|+++|+.|+=..
T Consensus 24 aslvy~r~nar~aptg---di~tl~a~l----------dgp~fP~EYILrlM~swa~v~dpylRIQNTGvSVLfqG~Ftr 90 (274)
T PHA03324 24 ASLVYIRDNARLAPTG---DIFTLLAKL----------DGPPIPAEYILEAMNSFLNIGEAWLRIQNTGQAVIVAGCFTK 90 (274)
T ss_pred eEEEEEecCceecCCC---CeEEehhhc----------cCCCCcHHHHHHHHHhhhcCCCceEEEecCceEEEEEeeecC
Confidence 3444455665555555 555555433 688999999999999988876655556677999999998532
Q ss_pred --C-C-eEEEECCCcceeeeeEEeeCCChH
Q 028888 98 --G-P-QLYMIEPSGISYRYFGAAIGKGRQ 123 (202)
Q Consensus 98 --g-p-~Ly~~d~~G~~~~~~~~a~G~gs~ 123 (202)
+ | ..+..|. -+..-...-+.|-...
T Consensus 91 p~~ap~~a~ta~~-nnViLaSt~StglSlS 119 (274)
T PHA03324 91 NAHCGDQIWEAPA-PTISLAAAKSLWVSAS 119 (274)
T ss_pred CCCCCcceeecCC-CceEeeechhccccHH
Confidence 2 2 3344333 3333334455555443
No 72
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=24.81 E-value=1.4e+02 Score=21.33 Aligned_cols=36 Identities=6% Similarity=0.013 Sum_probs=30.8
Q ss_pred cCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHh
Q 028888 17 NRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNY 52 (202)
Q Consensus 17 ~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~ 52 (202)
..|++.-.+|+.+.++-...|+....+.++..++.-
T Consensus 12 fKKLLRTr~NVLvLy~ks~k~a~~~Lk~~~~~A~~v 47 (112)
T cd03067 12 FKKLLRTRNNVLVLYSKSAKSAEALLKLLSDVAQAV 47 (112)
T ss_pred HHHHHhhcCcEEEEEecchhhHHHHHHHHHHHHHHh
Confidence 468888889999999999999999999888887763
No 73
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=24.74 E-value=68 Score=22.74 Aligned_cols=16 Identities=31% Similarity=0.955 Sum_probs=13.4
Q ss_pred CCCeEEEECCCcceee
Q 028888 97 DGPQLYMIEPSGISYR 112 (202)
Q Consensus 97 ~gp~Ly~~d~~G~~~~ 112 (202)
++|+||++||.+....
T Consensus 36 d~PrL~Yvdp~~~~~K 51 (104)
T PF14593_consen 36 DGPRLFYVDPKKMVLK 51 (104)
T ss_dssp TTTEEEEEETTTTEEE
T ss_pred cCCEEEEEECCCCeEC
Confidence 4799999999987654
No 74
>PF05113 DUF693: Protein of unknown function (DUF693); InterPro: IPR007800 This family consists of uncharacterised proteins from Borrelia burgdorferi.
Probab=24.48 E-value=2.6e+02 Score=23.61 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=39.8
Q ss_pred eEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHH---HhcCCCCCCHHHHHHHHH
Q 028888 88 GVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEI---EKLKLSEMTCRQGVIEVA 147 (202)
Q Consensus 88 ~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~L---e~~~~~~~s~~eai~la~ 147 (202)
.+|.+|+ -|+-+=.--|.|.+.-.--.-.=+.+.+...-| +..-..+||++|||+.+.
T Consensus 98 ~FImaGy--Lg~Pmstdyp~gDFsvelev~LlsksnFfnRkl~~~e~k~fKg~TV~daI~svF 158 (314)
T PF05113_consen 98 DFIMAGY--LGAPMSTDYPGGDFSVELEVYLLSKSNFFNRKLDGKEYKNFKGMTVQDAIKSVF 158 (314)
T ss_pred cEEeecc--cCCCceeccCCCceEEEEEEEEeecchhHhhhhccccccccCCcCHHHHHHHhC
Confidence 4678886 343344444788877655666677887777777 544457899999998753
No 75
>COG4728 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.42 E-value=86 Score=22.31 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=27.1
Q ss_pred ceEEecCcEEEEEecchhhHHHHHHHHHHHH
Q 028888 19 RIHSVHRHSGMAVAGLAADGRQIVTRAKSEA 49 (202)
Q Consensus 19 Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~ 49 (202)
-+|.|-+..++.+.|..+|...+.++++...
T Consensus 9 ~~~~i~~~~gl~~v~~~~~~s~~~~k~~~~~ 39 (124)
T COG4728 9 IIFKIKDKLGLTFVSKSADMSIQVEKAERLI 39 (124)
T ss_pred EEEEEhhhcCcEEEEecchhHHHHHHHHHhh
Confidence 4789999999999999999999999887543
No 76
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=24.12 E-value=75 Score=21.40 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=20.1
Q ss_pred CeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 175 RQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 175 ~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
.++++||++|.+++|+++.-.+++
T Consensus 16 PeH~vls~eE~~~vLk~l~i~~~q 39 (80)
T COG2012 16 PEHEVLSEEEAKEVLKELGIEPEQ 39 (80)
T ss_pred CceEEcCHHHHHHHHHHhCCCHHH
Confidence 359999999999999988776664
No 77
>KOG3652 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.93 E-value=1.9e+02 Score=27.68 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=51.3
Q ss_pred CceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcccccceeeeEEEEEEeCC
Q 028888 18 RRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRD 97 (202)
Q Consensus 18 ~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~iiaG~D~~ 97 (202)
+.+|.-....--.-+|..+-+-.|++.+ | ..+.|++|....|+++-+-++|... ..-|-|-.+++.+=-+
T Consensus 179 k~mfdasefpD~~eAGRAaAc~sLcRIf---c---SKksgEeIl~a~LS~FY~ll~Q~Lq----~kdyvchpmLasl~ln 248 (1215)
T KOG3652|consen 179 KHMFDASEFPDGVEAGRAAACASLCRIF---C---SKKSGEEILNAQLSNFYALLFQCLQ----EKDYVCHPMLASLFLN 248 (1215)
T ss_pred cCCCchhhCCCchhhhHHHHHHHHHHhh---h---cccCcccccHHHHHHHHHHHHHHHh----hcccccchhheeeeec
Confidence 3444444433334566666655555533 2 2357899999999999887776543 2234444455544347
Q ss_pred CCeEEEECCCcc
Q 028888 98 GPQLYMIEPSGI 109 (202)
Q Consensus 98 gp~Ly~~d~~G~ 109 (202)
||.||..|--|-
T Consensus 249 ~p~LFccdLkGI 260 (1215)
T KOG3652|consen 249 GPNLFCCDLKGI 260 (1215)
T ss_pred CCceeeecCCch
Confidence 899999988774
No 78
>PRK11508 sulfur transfer protein TusE; Provisional
Probab=22.64 E-value=2.9e+02 Score=19.80 Aligned_cols=36 Identities=11% Similarity=0.250 Sum_probs=26.2
Q ss_pred chhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHH
Q 028888 34 LAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYV 73 (202)
Q Consensus 34 ~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~ 73 (202)
+..|-..+++++|. |..+++..++++.|++.+...+
T Consensus 39 LT~~HW~VI~~lR~----~y~e~~~~P~~R~l~K~~~~~~ 74 (109)
T PRK11508 39 LSPEHWEVVRFVRD----FYLEFNTSPAIRMLVKAMANKF 74 (109)
T ss_pred CCHHHHHHHHHHHH----HHHHHCCCCcHHHHHHHHHHHh
Confidence 45566678887764 4556889999999999876543
No 79
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=22.37 E-value=3.1e+02 Score=24.23 Aligned_cols=59 Identities=22% Similarity=0.196 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 133 KLSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 133 ~~~~~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
..|.++.++..++++.+-+.-.+ .. +.+.||+++ |-+.-+-++-|+++.++-++.-.++
T Consensus 31 ~~p~~~~e~~~~~vrd~c~~h~~----q~--~t~kwidee-gdp~tv~sqmeleea~r~~~~~~d~ 89 (593)
T KOG0695|consen 31 VDPATTFEELCEEVRDMCRLHQQ----QP--LTLKWIDEE-GDPCTVSSQMELEEAFRLARQCRDE 89 (593)
T ss_pred ccCcccHHHHHHHHHHHHHHhhc----CC--ceeEeecCC-CCcceechhhhHHHHHHHHHhcccc
Confidence 46788999988886665433322 23 668999986 6678888999999998877655443
No 80
>PF00538 Linker_histone: linker histone H1 and H5 family; InterPro: IPR005818 Histone proteins have central roles in both chromatin organisation (as structural units of the nucleosome) and gene regulation (as dynamic components that have a direct impact on DNA transcription and replication). Eukaryotic DNA wraps around a histone octamer to form a nucleosome, the first order of compaction of eukaryotic chromatin. The core histone octamer is composed of a central H3-H4 tetramer and two flanking H2A-H2B dimers. Each of the core histone contains a common structural motif, called the histone fold, which facilitates the interactions between the individual core histones. In addition to the core histones, there is a "linker histone" called H1 (or H5 in avian species). The linker histones present in all multicellular eukaryotes are the most divergent group of histones, with numerous cell type- and stage-specific variant. Linker histone H1 is an essential component of chromatin structure. H1 links nucleosomes into higher order structures. Histone H5 performs the same function as histone H1, and replaces H1 in certain cells. The structure of GH5, the globular domain of the linker histone H5 is known [, ]. The fold is similar to the DNA-binding domain of the catabolite gene activator protein, CAP, thus providing a possible model for the binding of GH5 to DNA. The linker histones, which do not contain the histone fold motif, are critical to the higher-order compaction of chromatin, because they bind to internucleosomal DNA and facilitate interactions between individual nucleosomes. In addition, H1 variants have been shown to be involved in the regulation of developmental genes. A common feature of this protein family is a tripartite structure in which a globular (H15) domain of about 80 amino acids is flanked by two less structured N- and C-terminal tails. The H15 domain is also characterised by high sequence homology among the family of linker histones. The highly conserved H15 domain is essential for the binding of H1 or H5 to the nucleosome. It consists of a three helix bundle (I-III), with a beta-hairpin at the C terminus. There is also a short three-residue stretch between helices I and II that is in the beta-strand conformation. Together with the C-terminal beta-hairpin, this strand forms the third strand of an antiparallel beta-sheet [, , , ]. Proteins known to contain a H15 domain are: - Eukaryotic histone H1. The histones H1 constitute a family with many variants, differing in their affinity for chromatin. Several variants are simultaneously present in a single cell. For example, the nucleated erythrocytes of birds contain both H1 and H5, the latter being an extreme variant of H1. - Eukaryotic MHYST family of histone acetyltransferase. Histone acetyltransferases transfer an acetyl group from acetyl-CoA to the epsylon- amino group of lysine within the basic NH2-termini of histones, which bind the acidic phosphates of DNA []. This entry represents the H15 domain.; GO: 0003677 DNA binding, 0006334 nucleosome assembly, 0000786 nucleosome, 0005634 nucleus; PDB: 2LSO_A 2RQP_A 1UHM_A 1UST_A 1GHC_A 1HST_A 1YQA_A 1USS_A.
Probab=22.20 E-value=1.3e+02 Score=19.67 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=30.0
Q ss_pred eCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 118 IGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156 (202)
Q Consensus 118 ~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~ 156 (202)
.|+..+.+..|++.+|.-+.+....-.+..++|+.+.+.
T Consensus 20 ~GsS~~aI~kyI~~~y~~~~~~~~~~~~l~~aLk~~v~~ 58 (77)
T PF00538_consen 20 KGSSLQAIKKYIKAKYKVDLNPANFKSRLKRALKRGVEK 58 (77)
T ss_dssp SSEEHHHHHHHHHHHSSCCCCHTTHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhcCcCCChHHHHHHHHHHHHHHHHC
Confidence 477788899999999965666555667777888887765
No 81
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=21.12 E-value=4e+02 Score=23.82 Aligned_cols=58 Identities=12% Similarity=-0.162 Sum_probs=40.5
Q ss_pred CCCCCCHHHHHHHHH-HHHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhh
Q 028888 133 KLSEMTCRQGVIEVA-KIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALE 197 (202)
Q Consensus 133 ~~~~~s~~eai~la~-~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 197 (202)
|+|+.+++++..|+. ..++.+.-.+...+.+= ..++++ +.+|+.|++++.+..-.++.
T Consensus 71 fhP~v~~~ev~~Ls~~MT~Knal~~Lp~GGGKG-gi~~DP------k~~S~~E~erl~raf~~~i~ 129 (411)
T COG0334 71 FHPYVTLEEVKALSFWMTLKNALAGLPYGGGKG-GIIVDP------KGLSDGELERLSRAFGRAIY 129 (411)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCce-eeeCCc------ccCCHHHHHHHHHHHHHHHH
Confidence 789999999999986 78888876654444321 111222 34899999999987766654
No 82
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=21.06 E-value=2.8e+02 Score=19.90 Aligned_cols=54 Identities=13% Similarity=-0.040 Sum_probs=39.4
Q ss_pred EEECCC-cceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhh
Q 028888 102 YMIEPS-GISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 102 y~~d~~-G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~ 155 (202)
..+|.. |.+....+.+.|-.-..+-.-+=-.+-.+.+++||..+..+-+...+.
T Consensus 42 l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 42 LKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred EEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 457877 888888999999877776655444455688999998887666655554
No 83
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=20.99 E-value=1.1e+02 Score=27.58 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=41.2
Q ss_pred eeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhc---CCCCCCHHHHHHHHHHHH
Q 028888 87 CGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKII 150 (202)
Q Consensus 87 ~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~s~~eai~la~~~l 150 (202)
+-+|++|.|+.+. +-...+.-.-..-...++|.....+...|++. +...-++++|+..+.+..
T Consensus 346 v~lI~GG~~Kg~d-f~~L~~~~~~~~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~a 411 (448)
T COG0771 346 VILIAGGDDKGAD-FSPLAEILAKVIKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLARELA 411 (448)
T ss_pred EEEEECCCCCCCC-hhHHHHHhhhcceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHhh
Confidence 6678888876543 22222222222345889999999999999887 555667888887755443
No 84
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=20.80 E-value=71 Score=22.07 Aligned_cols=13 Identities=31% Similarity=0.774 Sum_probs=10.9
Q ss_pred CCCeEEEECCCcc
Q 028888 97 DGPQLYMIEPSGI 109 (202)
Q Consensus 97 ~gp~Ly~~d~~G~ 109 (202)
++|+|+++||.-.
T Consensus 24 d~PrL~yvdp~~~ 36 (89)
T cd01262 24 NGPRLIYVDPVKK 36 (89)
T ss_pred cCceEEEEcCCcC
Confidence 4899999999833
No 85
>PRK05578 cytidine deaminase; Validated
Probab=20.36 E-value=3.2e+02 Score=20.05 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeEE
Q 028888 137 MTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQ 178 (202)
Q Consensus 137 ~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~ 178 (202)
|+.++.++.|+++++.++-+ .++|.|=.++.+++ |..|.
T Consensus 1 ~~~~~L~~~a~~~~~~ay~P--yS~f~Vgaa~~~~~-G~i~~ 39 (131)
T PRK05578 1 MDWKELIEAAIEASEKAYAP--YSKFPVGAALLTDD-GRIYT 39 (131)
T ss_pred CCHHHHHHHHHHHHHhcCCC--cCCCceEEEEEeCC-CCEEE
Confidence 45677888888888777654 35566766777764 64443
Done!