Query 028888
Match_columns 202
No_of_seqs 127 out of 1169
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 06:10:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028888.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028888hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nzj_F Proteasome component C1 100.0 1.5E-48 5.3E-53 325.2 24.9 201 1-201 48-252 (288)
2 1iru_G 20S proteasome; cell cy 100.0 1.1E-47 3.7E-52 315.5 22.8 199 1-199 47-246 (254)
3 3h4p_A Proteasome subunit alph 100.0 4.2E-48 1.4E-52 319.4 15.7 198 1-201 52-249 (264)
4 1ryp_A 20S proteasome; multica 100.0 2E-46 7E-51 306.0 21.2 188 1-192 44-239 (243)
5 1iru_C 20S proteasome; cell cy 100.0 9.6E-46 3.3E-50 305.0 24.6 200 1-200 45-248 (261)
6 1ryp_C 20S proteasome; multica 100.0 1.1E-45 3.8E-50 301.8 24.7 192 1-193 45-242 (244)
7 1j2p_A Alpha-ring, proteasome 100.0 1.2E-45 4.1E-50 302.0 24.7 196 1-200 48-244 (246)
8 1ryp_E 20S proteasome; multica 100.0 6.9E-46 2.4E-50 302.7 22.2 195 1-198 40-241 (242)
9 1iru_A 20S proteasome; cell cy 100.0 1.6E-45 5.4E-50 301.3 23.3 191 1-193 50-243 (246)
10 1ryp_G 20S proteasome; multica 100.0 5.6E-45 1.9E-49 297.7 25.6 196 1-196 44-243 (244)
11 1ryp_D 20S proteasome; multica 100.0 5.5E-45 1.9E-49 297.2 24.5 191 1-196 42-238 (241)
12 1yar_A Proteasome alpha subuni 100.0 2.4E-45 8.1E-50 298.0 22.1 186 1-189 48-233 (233)
13 1iru_B 20S proteasome; cell cy 100.0 4E-45 1.4E-49 296.6 23.3 187 1-191 45-231 (233)
14 3h4p_a Proteasome subunit beta 100.0 2.8E-45 9.7E-50 295.1 18.9 192 1-199 15-209 (219)
15 1iru_D 20S proteasome; cell cy 100.0 4.1E-45 1.4E-49 299.2 19.9 194 1-199 43-239 (248)
16 1iru_E 20S proteasome; cell cy 100.0 8.3E-45 2.9E-49 296.2 20.4 188 1-191 48-240 (241)
17 1j2q_H Proteasome beta subunit 100.0 2.9E-44 1E-48 285.6 20.3 185 1-192 14-200 (202)
18 1yar_H Proteasome beta subunit 100.0 4.7E-44 1.6E-48 287.5 21.5 187 1-194 22-209 (217)
19 1ryp_F 20S proteasome; multica 100.0 1.3E-44 4.4E-49 293.7 16.7 184 1-189 45-233 (233)
20 1ryp_B 20S proteasome; multica 100.0 1.6E-43 5.6E-48 290.0 23.1 189 1-190 45-248 (250)
21 1iru_F 20S proteasome; cell cy 100.0 2.9E-44 1E-48 296.4 18.7 188 1-192 46-236 (263)
22 3mi0_A Proteasome subunit alph 100.0 1.3E-43 4.5E-48 289.9 21.4 187 1-197 41-242 (248)
23 1ryp_L 20S proteasome; multica 100.0 9.9E-44 3.4E-48 284.6 19.5 193 1-200 14-208 (212)
24 1iru_L 20S proteasome; cell cy 100.0 1.3E-43 4.4E-48 282.3 18.5 186 1-193 14-200 (204)
25 1iru_H 20S proteasome; cell cy 100.0 5.1E-44 1.8E-48 284.8 15.5 184 1-190 14-199 (205)
26 1q5q_H Proteasome beta-type su 100.0 1.6E-42 5.5E-47 281.7 22.5 195 1-199 14-224 (235)
27 3nzj_K Proteasome component PR 100.0 1.2E-41 4E-46 283.6 19.8 191 1-198 89-281 (287)
28 1ryp_K 20S proteasome; multica 100.0 1.7E-41 5.9E-46 268.7 19.7 177 1-182 15-194 (198)
29 3unf_H Proteasome subunit beta 100.0 6.2E-42 2.1E-46 278.0 17.4 178 1-186 14-192 (234)
30 1q5r_H Proteasome beta-type su 100.0 4.9E-41 1.7E-45 280.7 20.7 192 1-196 79-286 (294)
31 1q5q_A Proteasome alpha-type s 100.0 1.5E-41 5.1E-46 279.6 17.1 186 1-196 41-239 (259)
32 1iru_N 20S proteasome; cell cy 100.0 8.2E-42 2.8E-46 274.7 14.6 182 1-187 22-207 (219)
33 1ryp_N 20S proteasome; multica 100.0 7.8E-42 2.7E-46 277.3 12.6 184 1-188 22-217 (233)
34 1iru_M 20S proteasome; cell cy 100.0 1.6E-40 5.3E-45 266.1 20.0 168 1-172 23-201 (213)
35 3unf_N Proteasome subunit beta 100.0 1.3E-41 4.4E-46 269.7 13.4 181 1-189 14-197 (199)
36 1ryp_I 20S proteasome; multica 100.0 6.9E-40 2.4E-44 264.1 20.6 167 1-172 14-181 (222)
37 1iru_J 20S proteasome; cell cy 100.0 3.6E-40 1.2E-44 262.6 18.6 176 1-181 22-201 (205)
38 1ryp_J 20S proteasome; multica 100.0 7.6E-40 2.6E-44 260.5 19.9 175 1-181 22-200 (204)
39 2jay_A Proteasome; hydrolase; 100.0 7E-40 2.4E-44 273.4 19.7 191 1-195 71-277 (291)
40 1ryp_H 20S proteasome; multica 100.0 7.1E-40 2.4E-44 260.9 18.4 173 1-180 23-197 (205)
41 1ryp_M 20S proteasome; multica 100.0 1.6E-39 5.4E-44 262.0 20.0 168 1-172 23-210 (222)
42 1iru_K 20S proteasome; cell cy 100.0 1.3E-39 4.4E-44 258.6 18.9 176 1-181 15-192 (201)
43 1g0u_M Proteasome component PR 100.0 7.9E-41 2.7E-45 276.3 12.0 184 1-188 55-250 (266)
44 1iru_I 20S proteasome; cell cy 100.0 4.1E-39 1.4E-43 261.5 21.5 167 1-172 14-181 (234)
45 3nzj_H Proteasome component PU 100.0 2.8E-39 9.6E-44 266.1 20.7 167 1-172 43-210 (261)
46 1g3k_A ATP-dependent protease 100.0 2.6E-32 9E-37 212.0 13.9 154 1-170 14-173 (174)
47 1m4y_A ATP-dependent protease 100.0 4.6E-32 1.6E-36 210.1 14.5 152 1-168 14-170 (171)
48 2z3b_A ATP-dependent protease 100.0 9E-32 3.1E-36 210.2 14.0 153 1-169 19-179 (180)
49 2hc5_A ORF 99, hypothetical pr 75.8 6.1 0.00021 27.7 5.5 32 163-194 68-99 (117)
50 4eo3_A Bacterioferritin comigr 46.8 12 0.00041 30.6 2.9 45 99-143 103-148 (322)
51 2gx5_A GTP-sensing transcripti 38.5 1.2E+02 0.0041 22.5 8.3 72 38-134 10-81 (170)
52 1vd2_A Protein kinase C, IOTA 32.8 83 0.0028 20.7 4.8 54 134-194 23-76 (89)
53 4ayb_H DNA-directed RNA polyme 31.3 38 0.0013 22.1 2.8 23 175-197 18-40 (84)
54 3dqg_A Heat shock 70 kDa prote 30.8 1.2E+02 0.0042 21.6 5.9 22 179-200 117-138 (151)
55 1hmj_A RPB5, protein (subunit 29.5 29 0.00099 22.4 2.0 24 175-198 10-33 (78)
56 3n8e_A Stress-70 protein, mito 28.6 1.2E+02 0.0042 22.5 5.7 22 179-200 137-158 (182)
57 4gof_A Small glutamine-rich te 27.5 81 0.0028 18.6 3.6 32 125-156 9-43 (52)
58 1eik_A RNA polymerase subunit 26.5 33 0.0011 22.1 1.8 24 175-198 12-35 (77)
59 4fqn_A Malcavernin; helical do 26.1 1.5E+02 0.0051 19.8 5.3 33 51-85 41-75 (98)
60 4asv_A Small glutamine-rich te 23.4 1.2E+02 0.0043 20.0 4.2 32 125-156 26-60 (92)
61 1ixs_A Holliday junction DNA h 22.9 44 0.0015 20.3 1.9 33 116-148 25-59 (62)
62 3dob_A Heat shock 70 kDa prote 22.4 1.9E+02 0.0067 20.5 5.7 22 179-200 118-139 (152)
63 2lxb_A Small glutamine-rich te 21.9 1.5E+02 0.0051 18.8 4.2 32 125-156 14-48 (74)
64 1wj6_A KIAA0049 protein, RSGI 21.8 1.6E+02 0.0056 19.8 4.6 50 134-193 33-82 (101)
65 3h0x_A 78 kDa glucose-regulate 21.7 2.2E+02 0.0076 20.2 5.9 22 179-200 118-139 (152)
66 2bkf_A Zinc-finger protein NBR 20.3 1.9E+02 0.0065 18.9 6.3 49 135-193 26-74 (87)
67 2kxe_A DNA polymerase II small 20.2 76 0.0026 19.8 2.5 25 123-147 20-45 (75)
No 1
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=1.5e-48 Score=325.19 Aligned_cols=201 Identities=45% Similarity=0.774 Sum_probs=191.5
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++|+++.++++|||+|++||+|+++|+.+|++.|++.+|.+++.|+++++++|+++.++++|++++|.||+++
T Consensus 48 lAaD~r~t~gl~~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~~~~~~~i~v~~lA~~l~~~l~~yt~~~ 127 (288)
T 3nzj_F 48 FAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 127 (288)
T ss_dssp EEEEEEECCTTBCTTCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT
T ss_pred EEEcCCcccCCccccccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 68999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
++|||+|++||+|||++||+||++||+|++.+++++|+|+|++.++++||+. |+++||++||++++++||..+++++
T Consensus 128 ~~rP~gv~~lvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~~~~~~ms~eEAv~la~~al~~a~~~~ 207 (288)
T 3nzj_F 128 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDN 207 (288)
T ss_dssp TBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGG
T ss_pred cCCCceEEEEEEEEeCCCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999 9999999999999999999999998
Q ss_pred CCCCceEEEEEEEe-cCCCeEEEcCHHHHHHHHHHHHHhhhhccc
Q 028888 158 KDKAFELEMSWVCD-ESNRQHQKVPDELLEEAKAAARAALEEMDA 201 (202)
Q Consensus 158 ~~~~~~iei~~i~~-~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~ 201 (202)
..+++.+||+||++ ++++.|+.+|++++++..+.++.++|++|.
T Consensus 208 ~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~~~~~~~~~~~~~~~ 252 (288)
T 3nzj_F 208 KEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEINGDDD 252 (288)
T ss_dssp TTSEEEEEEEEEETTTSTTCCEECCHHHHHHHHHHHHHHTC----
T ss_pred cCCCCeEEEEEEEecCCCceEEECCHHHHHHHHHHHHHHhhcccc
Confidence 88889999999998 778889999999999999999999988775
No 2
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=1.1e-47 Score=315.49 Aligned_cols=199 Identities=60% Similarity=0.942 Sum_probs=188.2
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++|+++.++.+|||+|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.|++++
T Consensus 47 laaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~ 126 (254)
T 1iru_G 47 FGVEKLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYS 126 (254)
T ss_dssp EEEEEECSCTTBCTTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSBS
T ss_pred EEEecccCCCCcCcCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcccc
Confidence 68999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEe-CCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 81 WLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D-~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
++|||+|++||+||| +.||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++..
T Consensus 127 ~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~ 206 (254)
T 1iru_G 127 AVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKD 206 (254)
T ss_dssp SBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHSCSSSS
T ss_pred ccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 999999999999999 6689999999999999999999999999999999999999999999999999999999887655
Q ss_pred CCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhhc
Q 028888 160 KAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEM 199 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 199 (202)
+++.++|++|++++++.|+.++++++++++++++...|++
T Consensus 207 ~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~~~~~~~ 246 (254)
T 1iru_G 207 KAFELELSWVGELTNGRHEIVPKDIREEAEKYAKESLKEE 246 (254)
T ss_dssp CCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHHHHHCC-
T ss_pred CCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHHHhhhhc
Confidence 7888999999986544699999999999999999888843
No 3
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.2e-48 Score=319.43 Aligned_cols=198 Identities=26% Similarity=0.436 Sum_probs=187.7
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+|||+|++||+|+++|+.+|++.|++.+|.+++.|+++++++|+++.++++|++++|.|++++
T Consensus 52 laaD~r~~~~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~~~~i~v~~la~~l~~~~~~yt~~~ 131 (264)
T 3h4p_A 52 LAVDRRITSKLVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHG 131 (264)
T ss_dssp EEEECCCCSTTBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHTTSBS
T ss_pred EEEecCccCCccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 68999999999888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
++|||+|++||||||++||+||++||+|++.+++++|+|+|+..++++||+.|+++||++||++++++||..+.++ .+
T Consensus 132 ~~rP~~v~~lvaG~D~~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~a~~~--~s 209 (264)
T 3h4p_A 132 GVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEGLELAITALTKANED--IK 209 (264)
T ss_dssp SCCCCSEEEEEEEEETTEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCCTTCCSHHHHHHHHHHHHHHSSS--CC
T ss_pred CCCCeeEEEEEEEEeCCcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhc--cC
Confidence 9999999999999998899999999999999999999999999999999999999999999999999999999987 57
Q ss_pred CceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhhccc
Q 028888 161 AFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEMDA 201 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~ 201 (202)
+..++|++|+++ +..|+.|++++|++++.++.+.+|++|.
T Consensus 210 g~~iev~vi~~~-~~~~~~l~~~ei~~~~~~~~~~~~~~~~ 249 (264)
T 3h4p_A 210 PENVDVCIITVK-DAQFKKIPVEEIKKLIEKVKKKLNEENK 249 (264)
T ss_dssp TTSEEEEEEETT-TTEEEECCTTTTGGGTTTTTTSSSCC--
T ss_pred CCeEEEEEEEeC-CCcEEECCHHHHHHHHHHHHHhhhcchh
Confidence 778999999986 4579999999999999999888877664
No 4
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=2e-46 Score=306.03 Aligned_cols=188 Identities=25% Similarity=0.341 Sum_probs=180.1
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+|||+|++||+|+++|+.+|++.|.+.+|.+++.|+++++++|+++.++++|++++|.|++++
T Consensus 44 laad~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~~~~~~~~~v~~la~~l~~~l~~y~~~~ 123 (243)
T 1ryp_A 44 VISQKKVPDKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRA 123 (243)
T ss_dssp EEEECCCCCTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT
T ss_pred EEEEecCCccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC
Confidence 68999999888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC-------CCCHHHHHHHHHHHHHH
Q 028888 81 WLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS-------EMTCRQGVIEVAKIIYG 152 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-------~~s~~eai~la~~~l~~ 152 (202)
++|||+|++||+|||+ +||+||++||+|++.+++++|+|++++.++++||+.|++ +||++||++++++||..
T Consensus 124 ~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~~~~~~~~~~~ms~eea~~l~~~al~~ 203 (243)
T 1ryp_A 124 YMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMID 203 (243)
T ss_dssp TSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHHCSSSCCCSSHHHHHHHHHHHHHH
T ss_pred CccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHhhhcccccccCCCHHHHHHHHHHHHHH
Confidence 9999999999999997 689999999999999999999999999999999999998 99999999999999999
Q ss_pred hhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHH
Q 028888 153 VHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 192 (202)
Q Consensus 153 ~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~ 192 (202)
+.+++ .++.+++|++|+++ | |+.+++++|++++.++
T Consensus 204 ~~~rd-~s~~~iev~vi~~~-g--~~~l~~~ei~~~~~~~ 239 (243)
T 1ryp_A 204 ALGTE-FSKNDLEVGVATKD-K--FFTLSAENIEERLVAI 239 (243)
T ss_dssp HHTCC-CCTTSEEEEEEETT-E--EEECCHHHHHHHHHHH
T ss_pred Hhccc-CCCCcEEEEEEECC-C--eEECCHHHHHHHHHHh
Confidence 99986 67888999999985 4 9999999999999876
No 5
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=9.6e-46 Score=305.02 Aligned_cols=200 Identities=22% Similarity=0.300 Sum_probs=186.4
Q ss_pred CcccccCCCCCcccCC-cCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPGS-NRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|+++.++ .+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.|+++
T Consensus 45 laaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~ 124 (261)
T 1iru_C 45 LAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQF 124 (261)
T ss_dssp EEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTB
T ss_pred EEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhccc
Confidence 6899999999988765 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHhhhcc
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS-EMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-~~s~~eai~la~~~l~~~~~~~ 157 (202)
+++|||++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+++
T Consensus 125 ~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~ms~eeA~~la~~al~~~~~~d 204 (261)
T 1iru_C 125 GGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVS 204 (261)
T ss_dssp SSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCCTTCCCHHHHHHHHHHHHHHSSSCT
T ss_pred cCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999996 689999999999999999999999999999999999999 9999999999999999999987
Q ss_pred CCCCceEEEEEEEecCCC-eEEEcCHHHHHHHHHHHHHhhhhcc
Q 028888 158 KDKAFELEMSWVCDESNR-QHQKVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~-~~~~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
..++.+++|++|+++.+. .|+.|+++||++++.++.+..++++
T Consensus 205 ~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~~~~~~~~ 248 (261)
T 1iru_C 205 KLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHEEEEAKAE 248 (261)
T ss_dssp TCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHHTTTTTTS
T ss_pred CCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHHhchhhhh
Confidence 777788999999986322 3899999999999998866555443
No 6
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=1.1e-45 Score=301.81 Aligned_cols=192 Identities=25% Similarity=0.348 Sum_probs=181.7
Q ss_pred CcccccCCCCCcc-cCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++ +++.+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.|+++
T Consensus 45 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~ 124 (244)
T 1ryp_C 45 LAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQH 124 (244)
T ss_dssp EEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHB
T ss_pred EEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcc
Confidence 6899999999988 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeEEEEEEe-CCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D-~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
+++|||++++||+||| ++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++.
T Consensus 125 ~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd~ 204 (244)
T 1ryp_C 125 GGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSA 204 (244)
T ss_dssp SSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCSSSS
T ss_pred CCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999 678999999999999999999999999999999999999999999999999999999998865
Q ss_pred CCCceEEEEEEE--ecCCC--eEEEcCHHHHHHHHHHHH
Q 028888 159 DKAFELEMSWVC--DESNR--QHQKVPDELLEEAKAAAR 193 (202)
Q Consensus 159 ~~~~~iei~~i~--~~~~~--~~~~l~~~~i~~~~~~~~ 193 (202)
.++.+++|++|+ ++ +. .|+.|+++||++++.++.
T Consensus 205 ~sg~~i~v~vi~~~~~-~~~~~~~~l~~~ei~~~~~~~~ 242 (244)
T 1ryp_C 205 LTYDRLEFATIRKGAN-DGEVYQKIFKPQEIKDILVKTG 242 (244)
T ss_dssp CCGGGEEEEEEECCSS-SSSCEEEECCHHHHHHHHHHHT
T ss_pred CCCCcEEEEEEEeecC-CCceeEEECCHHHHHHHHHHhh
Confidence 568889999999 75 43 399999999999997653
No 7
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=1.2e-45 Score=302.03 Aligned_cols=196 Identities=27% Similarity=0.402 Sum_probs=186.4
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+||++|+++|+|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.|++++
T Consensus 48 laaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~ 127 (246)
T 1j2p_A 48 LIADKRVGSKLLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYG 127 (246)
T ss_dssp EEEECCCSCTTBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT
T ss_pred EEEeccCCccccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 68999999999888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
+.|||++++||+||| +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++ ..+
T Consensus 128 ~~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~~s 205 (246)
T 1j2p_A 128 GVRPFGVSLLIAGVN-EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIES-ELV 205 (246)
T ss_dssp TBCCCCEEEEEEEES-SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTS-CCC
T ss_pred CcccccEEEEEEEEC-CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc-cCC
Confidence 999999999999999 899999999999999999999999999999999999999999999999999999999998 778
Q ss_pred CceEEEEEEE-ecCCCeEEEcCHHHHHHHHHHHHHhhhhcc
Q 028888 161 AFELEMSWVC-DESNRQHQKVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 161 ~~~iei~~i~-~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
+.+++|++|+ ++ + .|+.+++++|++++.+..+..+|.+
T Consensus 206 g~~i~v~vi~~~~-~-~~~~l~~~ei~~~~~~~~~~~~~~~ 244 (246)
T 1j2p_A 206 PENIEVGYVKVDD-R-TFKEVSPEELKPYVERANERIRELL 244 (246)
T ss_dssp GGGEEEEEEETTT-C-CCEECCHHHHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEEEEcCC-C-ceEECCHHHHHHHHHHHHHHHHHhh
Confidence 8889999999 53 3 5999999999999999877777654
No 8
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=6.9e-46 Score=302.66 Aligned_cols=195 Identities=30% Similarity=0.417 Sum_probs=184.3
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++|++++++.+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.||+++
T Consensus 40 laaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~ 119 (242)
T 1ryp_E 40 LGVEKRATSPLLESDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGA 119 (242)
T ss_dssp EEEECCCSSTTBCGGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCCBSSC
T ss_pred EEEeecCCCcCccCccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcccc
Confidence 68999999999887888999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c------ccceeeeEEEEEEe-CCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Q 028888 81 W------LRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGV 153 (202)
Q Consensus 81 ~------~rP~~~~~iiaG~D-~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~ 153 (202)
+ .|||++++||+||| ++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+
T Consensus 120 ~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~ 199 (242)
T 1ryp_E 120 SGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQV 199 (242)
T ss_dssp TTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH
Confidence 8 99999999999999 5689999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 154 HDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 154 ~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
.++ ..++.+++|++|+++ + .|+.+++++|++++.++.+.+++
T Consensus 200 ~~~-~~sg~~i~v~vi~~~-~-~~~~~~~~ei~~~~~~~~~~~~~ 241 (242)
T 1ryp_E 200 MEE-KLDENNAQLSCITKQ-D-GFKIYDNEKTAELIKELKEKEAA 241 (242)
T ss_dssp CSS-CCCTTSEEEEEEETT-T-EEEECCHHHHHHHHHHHHHHHTT
T ss_pred hhc-cCCCCcEEEEEEECC-C-CeEECCHHHHHHHHHHHhhhhcc
Confidence 998 777888999999985 4 49999999999999988665543
No 9
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=1.6e-45 Score=301.28 Aligned_cols=191 Identities=27% Similarity=0.392 Sum_probs=182.0
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.|++++
T Consensus 50 laaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~y~~~~ 129 (246)
T 1iru_A 50 IVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNA 129 (246)
T ss_dssp EEEECCCCCSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBS
T ss_pred EEEeecCCCcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 68999999888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcc
Q 028888 81 WLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS--EMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~eai~la~~~l~~~~~~~ 157 (202)
++|||++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+++
T Consensus 130 ~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd 209 (246)
T 1iru_A 130 EMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSID 209 (246)
T ss_dssp SBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHhccc
Confidence 9999999999999997 689999999999999999999999999999999999999 9999999999999999999986
Q ss_pred CCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHH
Q 028888 158 KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 193 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~ 193 (202)
.++.+++|++|+++ |..|+.+++++|+++++++.
T Consensus 210 -~sg~~i~v~vi~~~-g~~~~~l~~~ei~~~~~~~~ 243 (246)
T 1iru_A 210 -FKPSEIEVGVVTVE-NPKFRILTEAEIDAHLVALA 243 (246)
T ss_dssp -CCTTSEEEEEEETT-EEEEEECCHHHHHHHHHHHH
T ss_pred -CCCCcEEEEEEECC-CCeEEECCHHHHHHHHHHhh
Confidence 77888999999984 55699999999999998763
No 10
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=5.6e-45 Score=297.73 Aligned_cols=196 Identities=46% Similarity=0.791 Sum_probs=183.9
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++|+++.++++||++|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.||+++
T Consensus 44 laaD~r~~~g~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~ 123 (244)
T 1ryp_G 44 FAVEKLITSKLLVPQKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYN 123 (244)
T ss_dssp EEEEEECCCTTBCTTTSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSCT
T ss_pred EEEecccCCCCccccccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 68999999999888778999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhc---CCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL---KLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~---~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
++|||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||+. |+++||++||++++++||..+.+++
T Consensus 124 ~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~la~~al~~~~~~d 203 (244)
T 1ryp_G 124 SVRPFGVSTIFGGVDKNGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDN 203 (244)
T ss_dssp TBCCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHGGGG
T ss_pred CccCceEEEEEEEEeCCcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 8999999999999998899999999999999999999999999999999997 9999999999999999999999988
Q ss_pred CCCCceEEEEEEEe-cCCCeEEEcCHHHHHHHHHHHHHhh
Q 028888 158 KDKAFELEMSWVCD-ESNRQHQKVPDELLEEAKAAARAAL 196 (202)
Q Consensus 158 ~~~~~~iei~~i~~-~~~~~~~~l~~~~i~~~~~~~~~~~ 196 (202)
..+++++||++|++ ++++.++..|++.++++.+.++++.
T Consensus 204 ~~s~~~iev~vi~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (244)
T 1ryp_G 204 KEKDFELEISWCSLSETNGLHKFVKGDLLQEAIDFAQKEI 243 (244)
T ss_dssp TTSCEEEEEEEEETTTTTTSEEECCTHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEEEEEecCCCCeeeeChHHHHHHHHHHHHHhc
Confidence 77888999999996 4445688889888888877766654
No 11
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=5.5e-45 Score=297.21 Aligned_cols=191 Identities=23% Similarity=0.352 Sum_probs=180.0
Q ss_pred CcccccCCCCCcccC-CcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|+++.+ +.+|||+|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.|+++
T Consensus 42 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~ 121 (241)
T 1ryp_D 42 LGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQS 121 (241)
T ss_dssp EEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTSS
T ss_pred EEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHccC
Confidence 689999999998876 7899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeEEEEEEeC--CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcC---CCCCCHHHHHHHHHHHHHHhh
Q 028888 80 WWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLK---LSEMTCRQGVIEVAKIIYGVH 154 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~--~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~---~~~~s~~eai~la~~~l~~~~ 154 (202)
+++|||++++||+|||+ .||+||++||+|++.+++++|+|+|++.++++||+.| +++||++||++++++||..+.
T Consensus 122 ~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~~ms~eea~~l~~~al~~~~ 201 (241)
T 1ryp_D 122 GGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVV 201 (241)
T ss_dssp TTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTCCTTSCCCSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhhhcccCCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999998 7899999999999999999999999999999999999 999999999999999999999
Q ss_pred hccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhh
Q 028888 155 DEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAAL 196 (202)
Q Consensus 155 ~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~ 196 (202)
+ .++.+++|++|+++ + .|+.+++++|++++.++.+..
T Consensus 202 ~---~sg~~i~v~vi~~~-~-~~~~l~~~ei~~~~~~~~~~~ 238 (241)
T 1ryp_D 202 Q---TGAKNIEITVVKPD-S-DIVALSSEEINQYVTQIEQEK 238 (241)
T ss_dssp C---SCSTTEEEEEEETT-T-EEEECCHHHHHHHHHHHTHHH
T ss_pred c---CCCCcEEEEEEECC-C-cEEECCHHHHHHHHHHHhhhh
Confidence 7 45667999999985 3 599999999999998875443
No 12
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=2.4e-45 Score=297.96 Aligned_cols=186 Identities=24% Similarity=0.359 Sum_probs=177.4
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.|++++
T Consensus 48 laaD~r~~~~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~~~~~~ 127 (233)
T 1yar_A 48 LISDKKVRSRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYG 127 (233)
T ss_dssp EEECCCCCCTTBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTBT
T ss_pred EEEeccCCcccccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 68999999998888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
+.|||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++. +
T Consensus 128 ~~rp~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~-s 206 (233)
T 1yar_A 128 GVRPYGVSLIFAGIDQIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGE-E 206 (233)
T ss_dssp TBCCCCEEEEEEEECSSCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHTSCSSC-C
T ss_pred CcCcceEEEEEEEEeCCCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhccC-C
Confidence 999999999999999889999999999999999999999999999999999999999999999999999999998854 6
Q ss_pred CceEEEEEEEecCCCeEEEcCHHHHHHHH
Q 028888 161 AFELEMSWVCDESNRQHQKVPDELLEEAK 189 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~i~~~~ 189 (202)
+.+++|++|+++ + .|+.++++||+++|
T Consensus 207 ~~~i~v~vi~~~-~-~~~~~~~~ei~~~l 233 (233)
T 1yar_A 207 LKAPEIASITVG-N-KYRIYDQEEVKKFL 233 (233)
T ss_dssp CCCCEEEEEETT-S-CCEECCHHHHHTTC
T ss_pred CCcEEEEEEECC-C-CEEECCHHHHHhhC
Confidence 778999999985 4 49999999998753
No 13
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=4e-45 Score=296.62 Aligned_cols=187 Identities=25% Similarity=0.387 Sum_probs=178.7
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+||++|++|++|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.|++++
T Consensus 45 laaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~y~~~~ 124 (233)
T 1iru_B 45 LATEKKQKSILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSG 124 (233)
T ss_dssp EEEECCCCCSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTSB
T ss_pred EEEEecCCccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCcC
Confidence 68999999888888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCCC
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKDK 160 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~~ 160 (202)
++|||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||++|+++||++||++++++||..+.+++ .+
T Consensus 125 ~~rP~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d-~s 203 (233)
T 1iru_B 125 GVRPFGVSLLICGWNEGRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQ-MT 203 (233)
T ss_dssp TBCCCSEEEEEEEECSSSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHTTCCSC-CC
T ss_pred CCCCcEEEEEEEEEeCCCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcc-CC
Confidence 99999999999999988999999999999999999999999999999999999999999999999999999999886 56
Q ss_pred CceEEEEEEEecCCCeEEEcCHHHHHHHHHH
Q 028888 161 AFELEMSWVCDESNRQHQKVPDELLEEAKAA 191 (202)
Q Consensus 161 ~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~ 191 (202)
+.+++|++|+++ + ++.++++||++++.+
T Consensus 204 g~~i~v~vi~~~-g--~~~l~~~ei~~~~~~ 231 (233)
T 1iru_B 204 EDNIEVGICNEA-G--FRRLTPTEVKDYLAA 231 (233)
T ss_dssp SSSEEEEEEETT-E--EEECCHHHHHHHHTT
T ss_pred CCCEEEEEEECC-C--EEECCHHHHHHHHHh
Confidence 778999999985 3 999999999998853
No 14
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=2.8e-45 Score=295.05 Aligned_cols=192 Identities=19% Similarity=0.271 Sum_probs=176.0
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|. +.+++.+|||+|++||+|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.++
T Consensus 15 laaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~-- 92 (219)
T 3h4p_a 15 LATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYKMRTGRNIPPLACATLLSNILHSSR-- 92 (219)
T ss_dssp EECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHTT--
T ss_pred EEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhc--
Confidence 68999999985 556789999999999999999999999999999999999999999999999999999999999873
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeee-EEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
.|||++++||+|||+ +||+||++||+|++.+++ ++|+|+|++.++++||++|+++||++||++++++||..+.+++
T Consensus 93 --~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~rd 170 (219)
T 3h4p_a 93 --MFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGIKLALNALKSAMERD 170 (219)
T ss_dssp --TTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred --CCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 689999999999998 689999999999999999 9999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhhc
Q 028888 158 KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEM 199 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 199 (202)
..++.+++|++|+++ .|+.|+++||++++.++.+.++++
T Consensus 171 ~~sg~~i~v~vi~~~---g~~~l~~~ei~~~l~~~~~~~~~~ 209 (219)
T 3h4p_a 171 TFSGNGISLAVITKD---GVKIFEDEEIEKILDSMKAKPKKK 209 (219)
T ss_dssp SSCCSCCCEEEEETT---EEEECCHHHHHHHHHHCC------
T ss_pred CCCCCcEEEEEEeCC---CeEEcCHHHHHHHHHHhhcccccc
Confidence 677778999999985 499999999999999888777665
No 15
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=4.1e-45 Score=299.18 Aligned_cols=194 Identities=27% Similarity=0.361 Sum_probs=181.1
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.+++++.+++.+|||+|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.|++++
T Consensus 43 laaD~r~~~~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~~ 122 (248)
T 1iru_D 43 LGVEKKSVAKLQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSN 122 (248)
T ss_dssp EEECCCCCCSSSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHTTSBT
T ss_pred EEEeecccccCccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccC
Confidence 68999999998877889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEe-CCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCC--CHHHHHHHHHHHHHHhhhcc
Q 028888 81 WLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEM--TCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D-~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~--s~~eai~la~~~l~~~~~~~ 157 (202)
+.|||++++||+||| ++||+||++||+|++.+++++|+|+|++.++++||+.|+++| |++||++++++||..+.+.
T Consensus 123 ~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~m~~s~eea~~la~~al~~~~~~- 201 (248)
T 1iru_D 123 GRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQS- 201 (248)
T ss_dssp TBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCCSSTTCSHHHHHHHHHHHHHTTSCT-
T ss_pred CcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHcC-
Confidence 999999999999999 678999999999999999999999999999999999999999 9999999999999999873
Q ss_pred CCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhhc
Q 028888 158 KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEM 199 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 199 (202)
++.+++|++|+++ | .|+.+++++|++++.+..+..+++
T Consensus 202 --sg~~i~v~vi~~~-g-~~~~l~~~ei~~~~~~~~~~~~~~ 239 (248)
T 1iru_D 202 --GGKNIELAVMRRD-Q-SLKILNPEEIEKYVAEIEKEKEEN 239 (248)
T ss_dssp --TSTTCCEEEEESS-S-CEECCCHHHHHHHTTTTTTTTTTT
T ss_pred --CCCcEEEEEEECC-C-cEEECCHHHHHHHHHHHHhcchhh
Confidence 4556899999985 4 599999999999998776555443
No 16
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=8.3e-45 Score=296.15 Aligned_cols=188 Identities=30% Similarity=0.436 Sum_probs=179.3
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++|++++++.+||++|+++|+|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++++|.|++++
T Consensus 48 laaD~r~~~g~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~~~~y~~~~ 127 (241)
T 1iru_E 48 LAVEKRITSPLMEPSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEED 127 (241)
T ss_dssp EEEECCCCCTTBCTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTTTTCBCSTT
T ss_pred EEEecccCCcCcCccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhccc
Confidence 68999999999888889999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c-----ccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhh
Q 028888 81 W-----LRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 81 ~-----~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~ 155 (202)
+ .|||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+
T Consensus 128 ~~~~l~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~ 207 (241)
T 1iru_E 128 ADPGAMSRPFGVALLFGGVDEKGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVME 207 (241)
T ss_dssp CCSSCBSSCCCEEEEEEEEETTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCS
T ss_pred cccccccccceEEEEEEEEeCCCCEEEEECCCCcEEecceEEECCCcHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhh
Confidence 7 89999999999999778999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHH
Q 028888 156 EAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAA 191 (202)
Q Consensus 156 ~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~ 191 (202)
+ ..++.+++|++|+++ + .|+.|+++||++++.+
T Consensus 208 ~-~~sg~~i~v~vi~~~-~-~~~~l~~~ei~~~~~~ 240 (241)
T 1iru_E 208 E-KLNATNIELATVQPG-Q-NFHMFTKEELEEVIKD 240 (241)
T ss_dssp S-CCCTTSEEEEEECSS-S-CCEECCHHHHHHHHTT
T ss_pred c-cCCCCCEEEEEEECC-C-CeEECCHHHHHHHHHh
Confidence 8 777888999999985 4 3999999999999853
No 17
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=2.9e-44 Score=285.57 Aligned_cols=185 Identities=19% Similarity=0.262 Sum_probs=173.9
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+|||+|++|++|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.++
T Consensus 14 laad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~r-- 91 (202)
T 1j2q_H 14 MATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYEIRRERKPTVRAIATLTSNLLNSYR-- 91 (202)
T ss_dssp EEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT--
T ss_pred EEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhhC--
Confidence 6899999986 5667889999999999999999999999999999999999999999999999999999999998853
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeee-EEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
.|||++++||+|||++||+||++||+|++.+++ ++|+|+|++.++++||+.|+++||++||++++++||..+.+++.
T Consensus 92 --~rp~~~~~lvaG~D~~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~~d~ 169 (202)
T 1j2q_H 92 --YFPYLVQLLIGGIDSEGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDS 169 (202)
T ss_dssp --TSCCCEEEEEEEEETTEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHTTCT
T ss_pred --CCCceEEEEEEEEeCCCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHHHHHHHHHHHHhcCC
Confidence 789999999999999899999999999999999 99999999999999999999999999999999999999999876
Q ss_pred CCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHH
Q 028888 159 DKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 192 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~ 192 (202)
.++.+++|++|+++ | ++.+++++|++++.+.
T Consensus 170 ~s~~~i~v~vi~~~-g--~~~l~~~ei~~~~~~~ 200 (202)
T 1j2q_H 170 ASGDGIDVVKITED-E--FYQYSPEEVEQILAKF 200 (202)
T ss_dssp TSCSCEEEEEECSS-C--EEECHHHHHHHHGGGT
T ss_pred CCCCcEEEEEEeCC-C--eEEeCHHHHHHHHHHh
Confidence 67778999999985 4 9999999999998653
No 18
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=4.7e-44 Score=287.51 Aligned_cols=187 Identities=18% Similarity=0.325 Sum_probs=175.1
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+||++|+++++|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++.+|.++
T Consensus 22 laaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r-- 99 (217)
T 1yar_H 22 MATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYRLQRRVNMPIEAVATLLSNMLNQVK-- 99 (217)
T ss_dssp EEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTT--
T ss_pred EEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhcC--
Confidence 6899999986 6667889999999999999999999999999999999999999999999999999999999998853
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
.|||++++||+||| +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++..
T Consensus 100 --~rp~~v~~lvaG~D-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~~ 176 (217)
T 1yar_H 100 --YMPYMVQLLVGGID-TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSA 176 (217)
T ss_dssp --TSCCCEEEEEEEES-SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred --CCCceEEEEEEEEC-CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHhccCC
Confidence 78999999999999 899999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHH
Q 028888 160 KAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 194 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~ 194 (202)
++.+++|++|++++ .++.++++||++++.++.+
T Consensus 177 s~~~i~v~vi~~~~--g~~~~~~~ei~~~~~~~~~ 209 (217)
T 1yar_H 177 SGGMIDVAVITRKD--GYVQLPTDQIESRIRKLGL 209 (217)
T ss_dssp CCSCCEEEEEETTT--EEEECCHHHHHHHHHHHTC
T ss_pred CCCcEEEEEEECCC--CEEEcCHHHHHHHHHHHHH
Confidence 67779999999843 3999999999999987654
No 19
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=1.3e-44 Score=293.67 Aligned_cols=184 Identities=21% Similarity=0.304 Sum_probs=173.2
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++++. ++.+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.|||+.
T Consensus 45 laaD~r~~~~l~--~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~t~~~ 122 (233)
T 1ryp_F 45 LVALKRNADELS--SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSSLVFNRKLAVERAGHLLCDKAQKNTQSY 122 (233)
T ss_dssp EEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHBT
T ss_pred EEEEeccccccc--cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHhccc
Confidence 689999999975 477999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC--CC--CHHHHHHHHHHHHHHhhhc
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS--EM--TCRQGVIEVAKIIYGVHDE 156 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~--s~~eai~la~~~l~~~~~~ 156 (202)
+.|||++++||||||++||+||++||+|++.+++++|+|+|++.++++||+.|++ +| |++||+++++++|..+. +
T Consensus 123 ~~rp~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~~m~~s~eea~~~a~~al~~~~-~ 201 (233)
T 1ryp_F 123 GGRPYGVGLLIIGYDKSGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQSL-R 201 (233)
T ss_dssp TCCCCCEEEEEEEEETTEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTSC-C
T ss_pred CCcCcceEEEEEEEeCCcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHh-h
Confidence 9999999999999999899999999999999999999999999999999999998 99 99999999999999999 5
Q ss_pred c-CCCCceEEEEEEEecCCCeEEEcCHHHHHHHH
Q 028888 157 A-KDKAFELEMSWVCDESNRQHQKVPDELLEEAK 189 (202)
Q Consensus 157 ~-~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~ 189 (202)
+ ..++.+++|++|+++ + .|+.++++||++++
T Consensus 202 d~~~s~~~i~v~vi~~~-~-~~~~l~~~ei~~~l 233 (233)
T 1ryp_F 202 DESLTVDNLSIAIVGKD-T-PFTIYDGEAVAKYI 233 (233)
T ss_dssp SSCCCTTTEEEEEEETT-E-EEEEEEGGGGGGGC
T ss_pred cccCCCCcEEEEEEECC-C-CEEECCHHHHHhhC
Confidence 4 356788999999985 3 49999999998753
No 20
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=1.6e-43 Score=289.99 Aligned_cols=189 Identities=25% Similarity=0.386 Sum_probs=178.2
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHH-hHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATN-YESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~-~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.+++++.+++.+||++|++||+|+++|..+|++.|.+.++.+++. |++.++.+++++.+++.++++++.++++
T Consensus 45 laaD~r~~~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~a~~~~~~~~~ 124 (250)
T 1ryp_B 45 IATEKKSSSPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYKRIYGEYPPTKLLVSEVAKIMQEATQS 124 (250)
T ss_dssp EEEECCCSCSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTHHHHSSCCCHHHHHHHHHHHHHHTTTS
T ss_pred EEEeccCCCccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhc
Confidence 689999998888888899999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
+++|||++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.++ .
T Consensus 125 ~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~-~ 203 (250)
T 1ryp_B 125 GGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEG-E 203 (250)
T ss_dssp BTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHCCS-C
T ss_pred CCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhcc-c
Confidence 89999999999999997 589999999999999999999999999999999999999999999999999999999887 5
Q ss_pred CCCceEEEEEEEec-------------CCCeEEEcCHHHHHHHHH
Q 028888 159 DKAFELEMSWVCDE-------------SNRQHQKVPDELLEEAKA 190 (202)
Q Consensus 159 ~~~~~iei~~i~~~-------------~~~~~~~l~~~~i~~~~~ 190 (202)
.++.+++|++|+++ +++.|+.|+++||++++.
T Consensus 204 ~sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~ 248 (250)
T 1ryp_B 204 FNGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLE 248 (250)
T ss_dssp CSTTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHT
T ss_pred cCCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHH
Confidence 56778999999985 234699999999999885
No 21
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.9e-44 Score=296.44 Aligned_cols=188 Identities=22% Similarity=0.339 Sum_probs=178.1
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYW 80 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~ 80 (202)
||+|+|.++++. ++.+|||+|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.|++++
T Consensus 46 laaD~r~~~gl~--~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~~~t~~~ 123 (263)
T 1iru_F 46 LVALKRAQSELA--AHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRY 123 (263)
T ss_dssp EEEECCCSSTTB--CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHBT
T ss_pred EEEecccccccc--cchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhhccc
Confidence 689999999975 477999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhcc-
Q 028888 81 WLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS--EMTCRQGVIEVAKIIYGVHDEA- 157 (202)
Q Consensus 81 ~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~eai~la~~~l~~~~~~~- 157 (202)
+.|||+|++||+|||++||+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.+++
T Consensus 124 ~~RP~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~ms~eea~~la~~al~~~~~rd~ 203 (263)
T 1iru_F 124 GRRPYGVGLLIAGYDDMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQ 203 (263)
T ss_dssp TCCCCCEEEEEEEEETTEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCTTC
T ss_pred ccccceEEEEEEEEcCCCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999899999999999999999999999999999999999987 9999999999999999999887
Q ss_pred CCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHH
Q 028888 158 KDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAA 192 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~ 192 (202)
..++.+++|++|++++ .|+.+++++|++++.+.
T Consensus 204 ~~sg~~iev~vi~~~~--~~~~l~~~ei~~~~~~~ 236 (263)
T 1iru_F 204 DLTTKNVSIGIVGKDL--EFTIYDDDDVSPFLEGL 236 (263)
T ss_dssp CCCTTTEEEEEEETTE--EEEEECSGGGHHHHTTC
T ss_pred cCCCCcEEEEEEECCC--CeEECCHHHHHHHHHHH
Confidence 3677789999999853 49999999999999765
No 22
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.3e-43 Score=289.91 Aligned_cols=187 Identities=13% Similarity=0.128 Sum_probs=163.7
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhC-CCCCHHHHHHHHH-HHHHHhhh
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYG-EPIPVKELAQRVA-SYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~ls-~~~~~~~~ 78 (202)
||+||| +++++|||+|++||+|+++|+.+|++.|.+.++.+++.|++.++ ++|+++.|+++++ .+.|.|++
T Consensus 41 laadkr-------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~~~~~~~~i~v~~la~~l~~~l~q~yt~ 113 (248)
T 3mi0_A 41 FVAENP-------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTE 113 (248)
T ss_dssp EEEECC-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCC-------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 588998 35789999999999999999999999999999999999999999 9999999999999 77888987
Q ss_pred cccccceeeeEEEEEEeC----CCCeEEEECCCcceee-eeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Q 028888 79 YWWLRPFGCGVILGGYDR----DGPQLYMIEPSGISYR-YFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGV 153 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~----~gp~Ly~~d~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~ 153 (202)
++|||+|++||+|||+ +||+||++||+|++.. ++++|+|+|++.++++||++|+++||++||++++++||..+
T Consensus 114 --~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~~~Le~~y~~~mt~eeai~la~~aL~~~ 191 (248)
T 3mi0_A 114 --QAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAG 191 (248)
T ss_dssp --SSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHC
T ss_pred --CCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999998 6899999999999995 99999999999999999999999999999999999999999
Q ss_pred h-------hccCCCCceEEEEEEEecC-CCeEEEcCHHHHHHHHHHHHHhhh
Q 028888 154 H-------DEAKDKAFELEMSWVCDES-NRQHQKVPDELLEEAKAAARAALE 197 (202)
Q Consensus 154 ~-------~~~~~~~~~iei~~i~~~~-~~~~~~l~~~~i~~~~~~~~~~~~ 197 (202)
. ++ ..++.+|||++|+++. ++.|+.|+++||++++.+..+.+-
T Consensus 192 ~~~~~~~~~~-~~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~~~~~~ 242 (248)
T 3mi0_A 192 SADTSGGDQP-TLGVASLEVAVLDANRPRRAFRRITGSALQALLVDQESPQS 242 (248)
T ss_dssp -------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC--------
T ss_pred HhhcccCccc-ccCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHcCCCcc
Confidence 9 44 5667789999999863 356999999999999988766544
No 23
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=9.9e-44 Score=284.55 Aligned_cols=193 Identities=14% Similarity=0.138 Sum_probs=180.3
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+||++|++|++|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.|+++
T Consensus 14 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~ 93 (212)
T 1ryp_L 14 VAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGA 93 (212)
T ss_dssp EEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTTS
T ss_pred EEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCC
Confidence 6899999996 666788999999999999999999999999999999999999999999999999999999999999853
Q ss_pred ccccceeeeEEEEEEe-CCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYD-RDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D-~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
||++++||+||| ++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++.
T Consensus 94 ----p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~la~~al~~~~~rd~ 169 (212)
T 1ryp_L 94 ----GLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDA 169 (212)
T ss_dssp ----CCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBT
T ss_pred ----CceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999 458999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhhcc
Q 028888 159 DKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
.++.+++|++|+++ + ++.++++++++++.++.+..++++
T Consensus 170 ~s~~~i~v~vi~~~-g--~~~~~~~ei~~~~~~~~~~~~~~~ 208 (212)
T 1ryp_L 170 YSGGSVNLYHVTED-G--WIYHGNHDVGELFWKVKEEEGSFN 208 (212)
T ss_dssp TCCSEEEEEEEETT-E--EEEEEEEEHHHHHHHHHHHHCCCT
T ss_pred ccCCceEEEEEcCC-c--eEEECHHHHHHHHHHHHHhhhhhc
Confidence 78888999999974 3 999999999999998877766654
No 24
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.3e-43 Score=282.30 Aligned_cols=186 Identities=15% Similarity=0.168 Sum_probs=174.9
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.+++
T Consensus 14 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~r~- 92 (204)
T 1iru_L 14 VAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYELRNKERISVAAASKLLANMVYQYKG- 92 (204)
T ss_dssp EEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTTT-
T ss_pred EEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhCC-
Confidence 6899999996 56667899999999999999999999999999999999999999999999999999999999999863
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
+||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||++|+++||++||++++++||..+.+++..
T Consensus 93 ---~~~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~rd~~ 169 (204)
T 1iru_L 93 ---MGLSMGTMICGWDKRGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAY 169 (204)
T ss_dssp ---SCCCBEEEEEEECSSSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHBTT
T ss_pred ---CCeeEEEEEEEEeCCCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHhCcc
Confidence 59999999999999899999999999999999999999999999999999999999999999999999999998766
Q ss_pred CCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHH
Q 028888 160 KAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 193 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~ 193 (202)
++.+++|++|+++ + ++.++++|+++++.++.
T Consensus 170 s~~~i~v~vi~~~-g--~~~l~~~ei~~~~~~~~ 200 (204)
T 1iru_L 170 SGGAVNLYHVRED-G--WIRVSSDNVADLHEKYS 200 (204)
T ss_dssp CCSEEEEEEECSS-C--EEEEEEEEHHHHHHHHT
T ss_pred CCCceEEEEEeCC-c--eEEeCHHHHHHHHHHhc
Confidence 7888999999874 3 99999999999998763
No 25
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=5.1e-44 Score=284.79 Aligned_cols=184 Identities=14% Similarity=0.148 Sum_probs=173.4
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+|||+|++|++|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++|.+++
T Consensus 14 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~- 92 (205)
T 1iru_H 14 LGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFKEMCYRYRE- 92 (205)
T ss_dssp EEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTT-
T ss_pred EEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCc-
Confidence 6899999999 66668889999999999999999999999999999999999999999999999999999999999874
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
||++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++.
T Consensus 93 ----p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d~ 168 (205)
T 1iru_H 93 ----DLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDG 168 (205)
T ss_dssp ----TCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBT
T ss_pred ----CccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999998 68999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEEEEEecCCCeEEEcCHHHHHHHHH
Q 028888 159 DKAFELEMSWVCDESNRQHQKVPDELLEEAKA 190 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~ 190 (202)
.++.+++|++|+++ |..++.++++||+.+++
T Consensus 169 ~s~~~i~v~vi~~~-g~~~~~l~~~ei~~~~~ 199 (205)
T 1iru_H 169 SSGGVIRLAAIAES-GVERQVLLGDQIPKFAV 199 (205)
T ss_dssp TCCSCEEEEEEETT-EEEEEEECGGGSCCCCC
T ss_pred ccCCcEEEEEEeCC-CeEEEEeChHHhhHHHh
Confidence 77788999999985 65689999999987764
No 26
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=1.6e-42 Score=281.73 Aligned_cols=195 Identities=18% Similarity=0.185 Sum_probs=178.2
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+||++|+++++|+++|..+|++.|.+.++.+++.|+++++++|+++.+++.|++++|.++++
T Consensus 14 laaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~~~~~~~ 93 (235)
T 1q5q_H 14 LAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA 93 (235)
T ss_dssp EEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTTHHH
T ss_pred EEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 6899999986 666788999999999999999999999999999999999999999999999999999999999999877
Q ss_pred ccccceeeeEEEEEEeCC-C-----CeEEEECCCcceeee--eEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 028888 80 WWLRPFGCGVILGGYDRD-G-----PQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIY 151 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-g-----p~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~ 151 (202)
. +|||++++||+|||++ | |+||++||+|++.++ +++|+|+|++.++++||+.|+++||++||++++++||.
T Consensus 94 ~-~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~ 172 (235)
T 1q5q_H 94 A-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLY 172 (235)
T ss_dssp H-TTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred h-hcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHH
Confidence 4 8999999999999986 7 999999999999999 99999999999999999999999999999999999999
Q ss_pred HhhhccCCCCc--eE-----EEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhhc
Q 028888 152 GVHDEAKDKAF--EL-----EMSWVCDESNRQHQKVPDELLEEAKAAARAALEEM 199 (202)
Q Consensus 152 ~~~~~~~~~~~--~i-----ei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~ 199 (202)
.+.+++..++. .+ +|++|+++ | ++.++++++++++.+..+..++.
T Consensus 173 ~a~~~d~~sg~~~~i~~~~~ev~vi~~~-g--~~~l~~~ei~~~~~~~~~~~~~~ 224 (235)
T 1q5q_H 173 DAADDDSATGGPDLTRGIYPTAVTITQA-G--AVHVSEETTSELARRIVAERTEQ 224 (235)
T ss_dssp HHHHHCTTTCCCBTTTTBCCEEEEEETT-E--EEECCHHHHHHHHHHHHHHHHTC
T ss_pred HHHhhCcccCCcccccccccEEEEEeCC-C--eEEeCHHHHHHHHHHHHHHHhhC
Confidence 99988644332 22 89999974 3 99999999999999887765543
No 27
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.2e-41 Score=283.60 Aligned_cols=191 Identities=14% Similarity=0.134 Sum_probs=178.0
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|. +.+++.+||++|+++|+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++++|.+++
T Consensus 89 lAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~~~~~~~isv~~la~~ls~~l~~~r~- 167 (287)
T 3nzj_K 89 VAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKG- 167 (287)
T ss_dssp EEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTTT-
T ss_pred EEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhcC-
Confidence 68999999875 5668899999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
+||++++||||||+ +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++.
T Consensus 168 ---~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms~eEAi~la~~aL~~a~~rD~ 244 (287)
T 3nzj_K 168 ---AGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDA 244 (287)
T ss_dssp ---SCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHBT
T ss_pred ---CCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHhhCc
Confidence 49999999999994 68999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 159 DKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
.++..++|++|+++ | ++++++++|++++.++.+...+
T Consensus 245 ~sg~~i~V~vItkd-g--~~~l~~~ev~~~l~~~~e~~~~ 281 (287)
T 3nzj_K 245 YSGGSVNLYHVTED-G--WIYHGNHDVGELFWKVKEEEGS 281 (287)
T ss_dssp TCCSEEEEEEEETT-E--EEEEEEEEHHHHHHHHHHHHCC
T ss_pred CCCCceEEEEEeCC-C--EEEeCHHHHHHHHHHHHHhhcc
Confidence 77788999999985 3 9999999999999887765433
No 28
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=1.7e-41 Score=268.73 Aligned_cols=177 Identities=18% Similarity=0.222 Sum_probs=163.8
Q ss_pred CcccccCCCCCcc-cCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMML-PGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~-~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++ +++.+|||+|++|++|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++.+|.+++.
T Consensus 15 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~~~ 94 (198)
T 1ryp_K 15 LASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYSIREDYELSPQAVSSFVRQELAKSIRS 94 (198)
T ss_dssp EEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTS
T ss_pred EEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccc
Confidence 6899999999866 468899999999999999999999999999999999999999999999999999999999998742
Q ss_pred ccccceeeeEEEEEEeC--CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 80 WWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~--~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
++||++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++
T Consensus 95 --r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~d 172 (198)
T 1ryp_K 95 --RRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRM 172 (198)
T ss_dssp --SSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred --CCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 359999999999996 6899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCceEEEEEEEecCCCeEEEcCH
Q 028888 158 KDKAFELEMSWVCDESNRQHQKVPD 182 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l~~ 182 (202)
..++.+++|++|+++ | ++.+++
T Consensus 173 ~~s~~~i~v~vi~~~-g--~~~~~~ 194 (198)
T 1ryp_K 173 PMDFKGVIVKIVDKD-G--IRQVDD 194 (198)
T ss_dssp SBCCCCEEEEEEETT-E--EEEECC
T ss_pred ccCCCceEEEEEcCC-C--EEEecc
Confidence 677788999999975 3 776653
No 29
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=6.2e-42 Score=277.99 Aligned_cols=178 Identities=19% Similarity=0.182 Sum_probs=165.6
Q ss_pred CcccccCCCCCccc-CCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|+++. ++.+|||+|++||+|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++++|.|
T Consensus 14 laaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~--- 90 (234)
T 3unf_H 14 LGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHALSTGREPRVATVTRILRQTLFRY--- 90 (234)
T ss_dssp EEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHT---
T ss_pred EEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhHHhcCCCCCHHHHHHHHHHHHHhc---
Confidence 68999999998665 67899999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
.+||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++..
T Consensus 91 --~~p~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~D~~ 168 (234)
T 3unf_H 91 --QGHVGASLVVGGVDLNGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLG 168 (234)
T ss_dssp --TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHBTT
T ss_pred --CCCccEEEEEEEEeCCCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCceEEEEEEEecCCCeEEEcCHHHHH
Q 028888 160 KAFELEMSWVCDESNRQHQKVPDELLE 186 (202)
Q Consensus 160 ~~~~iei~~i~~~~~~~~~~l~~~~i~ 186 (202)
++.+++|++|+++ | ++.+++.+++
T Consensus 169 sg~~iev~vi~~d-g--~~~l~~~~i~ 192 (234)
T 3unf_H 169 SGGNVDACVITAG-G--AKLQRALSTP 192 (234)
T ss_dssp CCSCEEEEEEESS-C--EEEEEEEECC
T ss_pred CCCcEEEEEEECC-C--EEEeCceecc
Confidence 7788999999986 4 7777665543
No 30
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=4.9e-41 Score=280.66 Aligned_cols=192 Identities=18% Similarity=0.179 Sum_probs=174.9
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++++|||+|+++|+|+++|..+|++.|++.++.+++.|+++++++++++.+++.|++++|.++++
T Consensus 79 lAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~~~~g~~isv~~la~~la~~l~~~~~~ 158 (294)
T 1q5r_H 79 LAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKANRLASMVRGNLGA 158 (294)
T ss_dssp EEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHHHHHHHhh
Confidence 6899999986 566788999999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccceeeeEEEEEEeCC-C-----CeEEEECCCcceeee--eEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 028888 80 WWLRPFGCGVILGGYDRD-G-----PQLYMIEPSGISYRY--FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIY 151 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-g-----p~Ly~~d~~G~~~~~--~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~ 151 (202)
. +|||+|++||+|||++ | |+||++||+|++.++ +++|+|+|++.++++||+.|+++||++||++++++||.
T Consensus 159 ~-~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~~Le~~y~~~ms~eEAi~la~~aL~ 237 (294)
T 1q5r_H 159 A-MQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLY 237 (294)
T ss_dssp H-TTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHH
T ss_pred h-cCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence 4 8999999999999986 6 999999999999999 89999999999999999999999999999999999999
Q ss_pred HhhhccCCCC--ceE-----EEEEEEecCCCeEEEcCHHHHHHHHHHHHHhh
Q 028888 152 GVHDEAKDKA--FEL-----EMSWVCDESNRQHQKVPDELLEEAKAAARAAL 196 (202)
Q Consensus 152 ~~~~~~~~~~--~~i-----ei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~~ 196 (202)
.+.+++..++ ..+ +|++|+++ | ++.++++++++++.++.+..
T Consensus 238 ~a~~rD~~sG~~~~ir~i~~ev~vI~~~-g--~~~l~~~ei~~~l~~i~~~~ 286 (294)
T 1q5r_H 238 DAADDDSATGGPDLTRGIYPTAVTITQA-G--AVHVSEETTSELARRIVAER 286 (294)
T ss_dssp HHHHHCTTTCCCBTTTTBCCEEEEEETT-E--EEECCHHHHHHHHHHHCC--
T ss_pred HHHhhccccCCchhhcccCCEEEEEECC-C--EEEcCHHHHHHHHHHHHHHh
Confidence 9998864432 225 89999974 3 99999999999998875443
No 31
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=1.5e-41 Score=279.64 Aligned_cols=186 Identities=15% Similarity=0.151 Sum_probs=164.8
Q ss_pred CcccccCCCCCcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCC-CCCHHHHHHHHHH-HHHHhhh
Q 028888 1 MGVEKLIASKMMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGE-PIPVKELAQRVAS-YVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~-~i~~~~la~~ls~-~~~~~~~ 78 (202)
||+|+| +++.+|||+|++||+|+++|..+|++.|.+.++.+++.|++.++. +|+++.+++++++ +.|.|+
T Consensus 41 laaD~r-------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~i~v~~la~~l~~~l~q~yt- 112 (259)
T 1q5q_A 41 FVAENP-------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFT- 112 (259)
T ss_dssp EEECCS-------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHHHH-
T ss_pred EEEecC-------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHhc-
Confidence 588988 367899999999999999999999999999999999999999884 9999999999999 667787
Q ss_pred cccccceeeeEEEEEEe----CCCCeEEEECCCccee-eeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Q 028888 79 YWWLRPFGCGVILGGYD----RDGPQLYMIEPSGISY-RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGV 153 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D----~~gp~Ly~~d~~G~~~-~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~ 153 (202)
.++|||+|++||+||| ..||+||++||+|++. .++++|+|++++.++++||++|+++||++||++++++||..+
T Consensus 113 -~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~~la~~al~~~ 191 (259)
T 1q5q_A 113 -EQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQG 191 (259)
T ss_dssp -HSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHHHHHHHHCCTTCCHHHHHHHHHHHHTTC
T ss_pred -cCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHHHHHHhhccCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999 6789999999999999 789999999999999999999999999999999999999999
Q ss_pred h-----hccCCCCceEEEEEEEec-CCCeEEEcCHHHHHHHHHHHHHhh
Q 028888 154 H-----DEAKDKAFELEMSWVCDE-SNRQHQKVPDELLEEAKAAARAAL 196 (202)
Q Consensus 154 ~-----~~~~~~~~~iei~~i~~~-~~~~~~~l~~~~i~~~~~~~~~~~ 196 (202)
. +++. ++.+++|++|+++ +++.|+.|++++|++++.+..+..
T Consensus 192 ~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~~~~ 239 (259)
T 1q5q_A 192 GAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEPAAA 239 (259)
T ss_dssp C--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC----
T ss_pred hhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhhhcc
Confidence 8 6755 7778999999986 234699999999999987664443
No 32
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=8.2e-42 Score=274.66 Aligned_cols=182 Identities=13% Similarity=0.072 Sum_probs=168.5
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHH-HhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYES-VYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~-~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|.++| ++.+++.+|||+|++|++|+++|..+|++.|.+.+|.+++.|++ +++++++++.+++++++.+|. +
T Consensus 22 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~--~ 99 (219)
T 1iru_N 22 IAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEELLGDGHSYSPRAIHSWLTRAMYS--R 99 (219)
T ss_dssp EEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHH--H
T ss_pred EEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH--h
Confidence 6899999986 46668899999999999999999999999999999999999998 999999999999999999964 5
Q ss_pred cccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHhhhc
Q 028888 79 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS--EMTCRQGVIEVAKIIYGVHDE 156 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~--~~s~~eai~la~~~l~~~~~~ 156 (202)
++++|||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++||..+.++
T Consensus 100 r~~~~P~~v~~lvaG~D~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~mt~eea~~l~~~al~~~~~~ 179 (219)
T 1iru_N 100 RSKMNPLWNTMVIGGYADGESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYR 179 (219)
T ss_dssp HHTTCCCCEEEEEEEEETTEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCceEEEEEEEEECCCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 567899999999999998899999999999999999999999999999999999999 999999999999999999998
Q ss_pred cCCCCceEEEEEEEecCCCeEEEcCHHHHHH
Q 028888 157 AKDKAFELEMSWVCDESNRQHQKVPDELLEE 187 (202)
Q Consensus 157 ~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~ 187 (202)
+..++.+++|++|+++ | ++.+++++|+.
T Consensus 180 d~~sg~~i~v~vi~~~-g--~~~~~~~~i~~ 207 (219)
T 1iru_N 180 DARSYNRFQTATVTEK-G--VEIEGPLSTET 207 (219)
T ss_dssp BTTCCSCEEEEEEETT-E--EEEEEEECCCC
T ss_pred cCcCCCcEEEEEEcCC-C--EEEcCCeeccc
Confidence 7667778999999984 3 88888777654
No 33
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=7.8e-42 Score=277.29 Aligned_cols=184 Identities=13% Similarity=0.104 Sum_probs=169.5
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHH-----HhCCCCCHHHHHHHHHHHHH
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYES-----VYGEPIPVKELAQRVASYVH 74 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~-----~~~~~i~~~~la~~ls~~~~ 74 (202)
||+|+|.++| ++.+++.+||++|++||+|+++|..+|++.|.+.+|.+++.|++ +++++|+++.++++++++++
T Consensus 22 laaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly 101 (233)
T 1ryp_N 22 IAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMY 101 (233)
T ss_dssp EEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHH
T ss_pred EEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHhhccchhhcCCCCCHHHHHHHHHHHHH
Confidence 6899999987 56667899999999999999999999999999999999999999 99999999999999999995
Q ss_pred HhhhcccccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC-----CCCHHHHHHHHHH
Q 028888 75 LCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS-----EMTCRQGVIEVAK 148 (202)
Q Consensus 75 ~~~~~~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-----~~s~~eai~la~~ 148 (202)
. +++++|||++++||+|||++ ||+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++
T Consensus 102 ~--~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eea~~la~~ 179 (233)
T 1ryp_N 102 Q--RRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVN 179 (233)
T ss_dssp H--HHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTTTCSSGGGGGGCCHHHHHHHHHH
T ss_pred H--hcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHHhhccccccCCCCHHHHHHHHHH
Confidence 4 55678999999999999986 89999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHH
Q 028888 149 IIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEA 188 (202)
Q Consensus 149 ~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~ 188 (202)
||..+.+++..++.+++|++|+++. .++.+++++|+++
T Consensus 180 al~~~~~rd~~sg~~i~v~vi~~~~--g~~~~~~~~i~~~ 217 (233)
T 1ryp_N 180 AMRVLYYRDARSSRNFSLAIIDKNT--GLTFKKNLQVENM 217 (233)
T ss_dssp HHHHHHHHBTTCCSEEEEEEEETTT--EEEEEEEEECCSC
T ss_pred HHHHHHHhcccCCCcEEEEEEECCC--CeEEcChHhcccc
Confidence 9999999877778889999999742 3888888777654
No 34
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=1.6e-40 Score=266.09 Aligned_cols=168 Identities=12% Similarity=0.194 Sum_probs=158.3
Q ss_pred CcccccCCCCCccc-CCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|+++. ++.+||++|+++|+|+++|..+|++.|.+.++.+++.|+++++++++++.++++|+++++ +++
T Consensus 23 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~y--~~r 100 (213)
T 1iru_M 23 VASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYKHSNNKAMTTGAIAAMLSTILY--SRR 100 (213)
T ss_dssp EEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHH--HTT
T ss_pred EEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--hhC
Confidence 68999999998665 688999999999999999999999999999999999999999999999999999999994 444
Q ss_pred ccccceeeeEEEEEEeCCC-CeEEEECCCcceeeeeEEeeCCChHHHHHHHHhc---------CCCCCCHHHHHHHHHHH
Q 028888 80 WWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL---------KLSEMTCRQGVIEVAKI 149 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~g-p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~---------~~~~~s~~eai~la~~~ 149 (202)
.|||++++||+|||++| |+||++||+|++.+++++|+|+|++.++++||+. |+++||++||++++++|
T Consensus 101 --~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~~~~~~~s~eea~~l~~~a 178 (213)
T 1iru_M 101 --FFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDV 178 (213)
T ss_dssp --TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSSCCCCCCCHHHHHHHHHHH
T ss_pred --CCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccccCCCCCCHHHHHHHHHHH
Confidence 79999999999999765 9999999999999999999999999999999999 88999999999999999
Q ss_pred HHHhhhccCCCCceEEEEEEEec
Q 028888 150 IYGVHDEAKDKAFELEMSWVCDE 172 (202)
Q Consensus 150 l~~~~~~~~~~~~~iei~~i~~~ 172 (202)
|..+.+++..++.+++|++|+++
T Consensus 179 l~~~~~~d~~s~~~i~v~vi~~~ 201 (213)
T 1iru_M 179 FISAAERDVYTGDALRICIVTKE 201 (213)
T ss_dssp HHHHHHHBTTSCSEEEEEEEETT
T ss_pred HHHHHHhCCccCCcEEEEEEcCC
Confidence 99999998777889999999985
No 35
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.3e-41 Score=269.67 Aligned_cols=181 Identities=15% Similarity=0.097 Sum_probs=166.5
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+|||+|++|++|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++++|.+
T Consensus 14 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~--- 90 (199)
T 3unf_N 14 VGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHGLELEEPPLVLAAANVVKNISYKY--- 90 (199)
T ss_dssp EEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHT---
T ss_pred EEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc---
Confidence 6899999999 566688999999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeee-EEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhcc
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYF-GAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEA 157 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~-~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~ 157 (202)
.|||++++||+|||+ +||+||+ |+|++..++ ++++|+|++.++++||+.|+++||++||++++++||..+.+++
T Consensus 91 --~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~la~~al~~~~~~d 166 (199)
T 3unf_N 91 --REDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRD 166 (199)
T ss_dssp --TTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHC
T ss_pred --CCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 469999999999998 5799999 999987765 5556999999999999999999999999999999999999987
Q ss_pred CCCCceEEEEEEEecCCCeEEEcCHHHHHHHH
Q 028888 158 KDKAFELEMSWVCDESNRQHQKVPDELLEEAK 189 (202)
Q Consensus 158 ~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~ 189 (202)
..++.+++|++|+++ |..++.|+++||++++
T Consensus 167 ~~sg~~i~v~vi~~~-g~~~~~l~~~ei~~~~ 197 (199)
T 3unf_N 167 GSSGGVIYLVTITAA-GVDHRVILGDELPKFY 197 (199)
T ss_dssp TTCCSCEEEEEECSS-CEEEEEECGGGSCCCC
T ss_pred cccCCCeEEEEEcCC-CEEEEEcCcccCcccc
Confidence 667778999999985 6679999999997764
No 36
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=6.9e-40 Score=264.10 Aligned_cols=167 Identities=15% Similarity=0.116 Sum_probs=158.2
Q ss_pred CcccccCCCCCccc-CCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|+++. ++.+||++|++||+|+++|..+|++.|.+.++.+++.|+++++++|+++.+++++++.++.+
T Consensus 14 laaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~--- 90 (222)
T 1ryp_I 14 IAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY--- 90 (222)
T ss_dssp EEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT---
T ss_pred EEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc---
Confidence 68999999998655 67899999999999999999999999999999999999999999999999999999999876
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
.|||++++||||||++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++..
T Consensus 91 --~~p~~v~~lvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~~~~~d~~ 168 (222)
T 1ryp_I 91 --QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLG 168 (222)
T ss_dssp --TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred --CCCCCeeEEEEEEeCCCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHhcccc
Confidence 479999999999999899999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCceEEEEEEEec
Q 028888 160 KAFELEMSWVCDE 172 (202)
Q Consensus 160 ~~~~iei~~i~~~ 172 (202)
++..++|++|+++
T Consensus 169 sg~~i~v~vi~~~ 181 (222)
T 1ryp_I 169 SGSNVDVCVMEIG 181 (222)
T ss_dssp CCSCEEEEEEETT
T ss_pred CCCcEEEEEEECC
Confidence 6778999999985
No 37
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=3.6e-40 Score=262.58 Aligned_cols=176 Identities=15% Similarity=0.144 Sum_probs=161.0
Q ss_pred CcccccCCCCCcccC-CcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|+++.+ +.+||++|++|++|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++ |+++
T Consensus 22 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~r 99 (205)
T 1iru_J 22 IAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPYTLMSMVANLL--YEKR 99 (205)
T ss_dssp EEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHH--HTTT
T ss_pred EEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH--HHhc
Confidence 689999999997765 7899999999999999999999999999999999999999999999999999999999 5554
Q ss_pred ccccceeeeEEEEEEeC--CCCeEEEECCCcceeee-eEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 80 WWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~--~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~ 156 (202)
..||++++||+|||+ +||+||++||+|++..+ .++|+|+|++.++++||+.|+++||++||++++++||..+.++
T Consensus 100 --~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~ 177 (205)
T 1iru_J 100 --FGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDR 177 (205)
T ss_dssp --TSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHGGG
T ss_pred --CCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 349999999999995 68999999999999766 5699999999999999999999999999999999999999999
Q ss_pred cCCCCceEEEEEEEecCCCeEEEcC
Q 028888 157 AKDKAFELEMSWVCDESNRQHQKVP 181 (202)
Q Consensus 157 ~~~~~~~iei~~i~~~~~~~~~~l~ 181 (202)
+..++.+++|++|+++ |..++.++
T Consensus 178 d~~s~~~i~v~vi~~~-g~~~~~~~ 201 (205)
T 1iru_J 178 DAVSGMGVIVHIIEKD-KITTRTLK 201 (205)
T ss_dssp BTTSCSCEEEEEEESS-BEEEEEBC
T ss_pred CcccCCceEEEEEcCC-CEEEEEee
Confidence 8777888999999985 65565553
No 38
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=7.6e-40 Score=260.50 Aligned_cols=175 Identities=12% Similarity=0.106 Sum_probs=160.1
Q ss_pred CcccccCCCCCcccC-CcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLPG-SNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~~-~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++++++.+ +.+||++|+ +++|+++|..+|++.|.+.++.+++.|+++++++++++.+++++++++ |+++
T Consensus 22 laaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~~--y~~~ 98 (204)
T 1ryp_J 22 IACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYKLKEERAIEPETFTQLVSSSL--YERR 98 (204)
T ss_dssp EEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHH--HTTT
T ss_pred EEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHH--HHhc
Confidence 689999999997765 789999999 999999999999999999999999999999999999999999999999 5555
Q ss_pred ccccceeeeEEEEEEeC--CCCeEEEECCCcceeee-eEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 80 WWLRPFGCGVILGGYDR--DGPQLYMIEPSGISYRY-FGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDE 156 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~--~gp~Ly~~d~~G~~~~~-~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~ 156 (202)
. .||++++||+|||+ +||+||++||+|++..+ .++|+|+|++.++++||+.|+++||++||++++++||..+.++
T Consensus 99 ~--~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l~~~al~~~~~~ 176 (204)
T 1ryp_J 99 F--GPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADR 176 (204)
T ss_dssp T--SCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred C--CCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcCHHHHHHHHHHHHHHHHHh
Confidence 3 39999999999996 67999999999999766 5699999999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEEEEecCCCeEEEcC
Q 028888 157 AKDKAFELEMSWVCDESNRQHQKVP 181 (202)
Q Consensus 157 ~~~~~~~iei~~i~~~~~~~~~~l~ 181 (202)
+..++.+++|++|+++ |..++.++
T Consensus 177 d~~s~~~i~v~vi~~~-g~~~~~~~ 200 (204)
T 1ryp_J 177 DALSGWGAVVYIIKKD-EVVKRYLK 200 (204)
T ss_dssp BTTSCSCEEEEEEESS-CEEEEEEC
T ss_pred CcccCCcEEEEEEcCC-CEEEEEee
Confidence 7677788999999985 65555553
No 39
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=7e-40 Score=273.43 Aligned_cols=191 Identities=17% Similarity=0.174 Sum_probs=160.8
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|+++|. +.+++++|||+|++|++|+++|..+|++.|.+.++.+++.|++.++++++++.+++.+++++|.+++
T Consensus 71 lAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~~~~~~~i~v~~la~~la~~l~~~~~- 149 (291)
T 2jay_A 71 MAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLA- 149 (291)
T ss_dssp EEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHTCHH-
T ss_pred EEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhhhhcCCCCCHHHHHHHHHHHHHHhhh-
Confidence 68999999994 5567889999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccccceeeeEEEEEEeCC-C-----CeEEEECCCccee--eeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Q 028888 80 WWLRPFGCGVILGGYDRD-G-----PQLYMIEPSGISY--RYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIY 151 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~-g-----p~Ly~~d~~G~~~--~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~ 151 (202)
..+|||+|++||||||++ + |+||++||+|++. +++++|+|+|++.++++||+.|+++||++||++++++||.
T Consensus 150 ~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEAi~la~~aL~ 229 (291)
T 2jay_A 150 AAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALY 229 (291)
T ss_dssp HHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHHHHHHHHHGGGCCSHHHHHHHHHHHHH
T ss_pred hhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999985 4 8999999999998 8999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCce--E-----EEEEEEecCCCeEEEcCHHHHHHHHHHHHHh
Q 028888 152 GVHDEAKDKAFE--L-----EMSWVCDESNRQHQKVPDELLEEAKAAARAA 195 (202)
Q Consensus 152 ~~~~~~~~~~~~--i-----ei~~i~~~~~~~~~~l~~~~i~~~~~~~~~~ 195 (202)
.+.+++..++.. + +|++|+++ + ++.+++++|++++.++.+.
T Consensus 230 ~a~~~D~~sg~~e~vr~~~~~v~vi~~d-g--~~~l~~~ei~~~~~~~~~~ 277 (291)
T 2jay_A 230 DAADDDSATGGPDLVRGIFPTAVIIDAD-G--AVDVPESRIAELARAIIES 277 (291)
T ss_dssp HC----------------CCEEEEEETT-E--EEECCHHHHHHHHHHC---
T ss_pred HHHhhCCCCCCcccccccCCEEEEEECC-C--eEEcCHHHHHHHHHHHHHh
Confidence 999886443332 1 69999985 3 9999999999999876543
No 40
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=7.1e-40 Score=260.92 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=160.3
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+||++|++|++|+++|..+|++.+.+.++.+++.|++++++ ++++.+++++++++|.++++
T Consensus 23 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~-~~v~~la~~l~~~~~~~~~~ 101 (205)
T 1ryp_H 23 LGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYTSQYGT-PSTETAASVFKELCYENKDN 101 (205)
T ss_dssp EEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHTTTT
T ss_pred EEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhhcC
Confidence 6899999999 566678899999999999999999999999999999999999999999 99999999999999999752
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
|++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++.
T Consensus 102 -----~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~~d~ 176 (205)
T 1ryp_H 102 -----LTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDG 176 (205)
T ss_dssp -----CCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHHBT
T ss_pred -----ceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence 999999999997 68999999999999999999999999999999999999999999999999999999999876
Q ss_pred CCCceEEEEEEEecCCCeEEEc
Q 028888 159 DKAFELEMSWVCDESNRQHQKV 180 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l 180 (202)
.++.+++|++|+++ |...+.+
T Consensus 177 ~sg~~i~v~vi~~~-g~~~~~~ 197 (205)
T 1ryp_H 177 SSGGVIRMVVLTAA-GVERLIF 197 (205)
T ss_dssp TCCSCEEEEEEETT-EEEEEEE
T ss_pred ccCCeEEEEEEcCC-CEEEEEe
Confidence 67788999999985 5334434
No 41
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=1.6e-39 Score=262.00 Aligned_cols=168 Identities=17% Similarity=0.198 Sum_probs=157.5
Q ss_pred CcccccCCCCCc-ccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhC-CCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASKMM-LPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYG-EPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~l~-~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~-~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|.++|++ .+++.+|||+|+++++|+++|..+|++.|.+.++.+++.|+++++ ++|+++.+++++++.++. +
T Consensus 23 laaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly~--~ 100 (222)
T 1ryp_M 23 LAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYHFDHNDKKLSINSAARNIQHLLYG--K 100 (222)
T ss_dssp EEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHT--T
T ss_pred EEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh--c
Confidence 689999999986 457889999999999999999999999999999999999999999 999999999999999954 3
Q ss_pred cccccceeeeEEEEEEeCCC-CeEEEECCCcceeeeeEEeeCCChHHHHHHHHhc-----------------CCCCCCHH
Q 028888 79 YWWLRPFGCGVILGGYDRDG-PQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKL-----------------KLSEMTCR 140 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~g-p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~-----------------~~~~~s~~ 140 (202)
+ +|||++++||+|||++| |+||++||+|++.+++++|+|+|+..++++||+. |+++||++
T Consensus 101 r--~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~~~~~~~~~~~~~~~~s~e 178 (222)
T 1ryp_M 101 R--FFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVE 178 (222)
T ss_dssp T--TSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCBCTTSTTCSBCCCCCCCHH
T ss_pred C--CCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhcccccccccccccccccccCCCCCCHH
Confidence 2 78999999999999765 9999999999999999999999999999999998 88999999
Q ss_pred HHHHHHHHHHHHhhhccCCCCceEEEEEEEec
Q 028888 141 QGVIEVAKIIYGVHDEAKDKAFELEMSWVCDE 172 (202)
Q Consensus 141 eai~la~~~l~~~~~~~~~~~~~iei~~i~~~ 172 (202)
||++++++||..+.+++..++.+++|++|+++
T Consensus 179 eA~~la~~al~~a~~rd~~sg~~i~v~vi~~~ 210 (222)
T 1ryp_M 179 EVIKLVRDSFTSATERHIQVGDGLEILIVTKD 210 (222)
T ss_dssp HHHHHHHHHHHHHHHHBTTCCSEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHhcccCCCcEEEEEEcCC
Confidence 99999999999999998777888999999985
No 42
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=1.3e-39 Score=258.62 Aligned_cols=176 Identities=14% Similarity=0.195 Sum_probs=159.3
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++| ++.+++.+||++|++|++|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++.+.... +
T Consensus 15 laaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~l~~~~-~ 93 (201)
T 1iru_K 15 VASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYKMRNGYELSPTAAANFTRRNLADCL-R 93 (201)
T ss_dssp EEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-T
T ss_pred EEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH-h
Confidence 6899999997 5667889999999999999999999999999999999999999999999999999999987652221 1
Q ss_pred ccccceeeeEEEEEEeC-CCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccC
Q 028888 80 WWLRPFGCGVILGGYDR-DGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAK 158 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~-~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~ 158 (202)
..|||++++||+|||+ +||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++.
T Consensus 94 -~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l~~~al~~a~~rd~ 172 (201)
T 1iru_K 94 -SRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFI 172 (201)
T ss_dssp -SSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHTBC
T ss_pred -cCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHhhcc
Confidence 2379999999999997 58999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEEEEecCCCeEEEcC
Q 028888 159 DKAFELEMSWVCDESNRQHQKVP 181 (202)
Q Consensus 159 ~~~~~iei~~i~~~~~~~~~~l~ 181 (202)
.++.+++|++|+++ | ++.++
T Consensus 173 ~sg~~i~v~vi~~~-g--~~~~~ 192 (201)
T 1iru_K 173 LNLPTFSVRIIDKN-G--IHDLD 192 (201)
T ss_dssp BCCCCEEEEEEETT-E--EECCC
T ss_pred ccCCceEEEEEcCC-C--eEEee
Confidence 77788999999985 4 55554
No 43
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=7.9e-41 Score=276.33 Aligned_cols=184 Identities=13% Similarity=0.107 Sum_probs=169.4
Q ss_pred CcccccCCCC-CcccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHH-----HhCCCCCHHHHHHHHHHHHH
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYES-----VYGEPIPVKELAQRVASYVH 74 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~-----~~~~~i~~~~la~~ls~~~~ 74 (202)
||+|+|.++| ++.+++.+||++|+++|+|+++|..+|++.|.+.+|.+++.|++ +++++++++.++++++++++
T Consensus 55 lAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~ly 134 (266)
T 1g0u_M 55 IAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMY 134 (266)
T ss_dssp EEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHHTTCTTTTTTTSCCHHHHHHHHHHHHH
T ss_pred EEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhhhccchhhcCCCCCHHHHHHHHHHHHH
Confidence 6899999987 56667899999999999999999999999999999999999998 99999999999999999995
Q ss_pred HhhhcccccceeeeEEEEEEeCC-CCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCC-----CCCHHHHHHHHHH
Q 028888 75 LCTLYWWLRPFGCGVILGGYDRD-GPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLS-----EMTCRQGVIEVAK 148 (202)
Q Consensus 75 ~~~~~~~~rP~~~~~iiaG~D~~-gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~-----~~s~~eai~la~~ 148 (202)
. +++++|||++++||+|||++ ||+||++||+|++.+++++|+|+|++.++++||+.|++ +||++||++++++
T Consensus 135 ~--~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~~~~~ms~eeA~~la~~ 212 (266)
T 1g0u_M 135 Q--RRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVN 212 (266)
T ss_dssp H--HHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTTTCSSGGGGGGCCHHHHHHHHHH
T ss_pred H--hccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHHhhcccccCCCCCHHHHHHHHHH
Confidence 4 55678999999999999986 89999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHH
Q 028888 149 IIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEA 188 (202)
Q Consensus 149 ~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~ 188 (202)
||..+.+++..++.+++|++|+++.| ++.+++++|+++
T Consensus 213 al~~a~~rd~~sg~~i~v~vI~k~~g--~~~~~~~ei~~~ 250 (266)
T 1g0u_M 213 AMRVLYYRDARSSRNFSLAIIDKNTG--LTFKKNLQVENM 250 (266)
T ss_dssp HHHHHHHHBTTCCSEEEEEEEETTTE--EEEEEEEECCCC
T ss_pred HHHHHHHhcCCCCCcEEEEEEECCCC--eEEcCHHHhhhh
Confidence 99999998877788899999998423 888888777654
No 44
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=4.1e-39 Score=261.52 Aligned_cols=167 Identities=19% Similarity=0.207 Sum_probs=158.0
Q ss_pred CcccccCCCCCccc-CCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKMMLP-GSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l~~~-~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|+++. ++.+|||+|++||+|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++.+|.++
T Consensus 14 laaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~v~~la~~l~~~l~~~~-- 91 (234)
T 1iru_I 14 LGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGRLPRVVTANRMLKQMLFRYR-- 91 (234)
T ss_dssp EEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHTT--
T ss_pred EEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC--
Confidence 68999999998765 678999999999999999999999999999999999999999999999999999999998763
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
+||++++||||||++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++..
T Consensus 92 ---~~~~v~llvaG~D~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la~~al~~a~~~d~~ 168 (234)
T 1iru_I 92 ---GYIGAALVLGGVDVTGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLG 168 (234)
T ss_dssp ---TCSCEEEEEEEECSSCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHHHHHHHHHHHHCTT
T ss_pred ---CCCceeEEEEEEcCCCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 59999999999999899999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCceEEEEEEEec
Q 028888 160 KAFELEMSWVCDE 172 (202)
Q Consensus 160 ~~~~iei~~i~~~ 172 (202)
++.+++|++|+++
T Consensus 169 sg~~i~v~vi~k~ 181 (234)
T 1iru_I 169 SGSNIDLCVISKN 181 (234)
T ss_dssp CCSCEEEEEEETT
T ss_pred CCCCEEEEEEECC
Confidence 6778999999975
No 45
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=2.8e-39 Score=266.10 Aligned_cols=167 Identities=15% Similarity=0.106 Sum_probs=158.0
Q ss_pred CcccccCCCCC-cccCCcCceEEecCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhc
Q 028888 1 MGVEKLIASKM-MLPGSNRRIHSVHRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLY 79 (202)
Q Consensus 1 la~d~r~~~~l-~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~ 79 (202)
||+|+|.++|. +.+++++||++|++||+|+++|..+|++.+.+.++.+++.|+++++++++++.+++++++.++.|
T Consensus 43 lAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~~~~~~~~~v~~~a~~l~~~l~~~--- 119 (261)
T 3nzj_H 43 IAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHSLYTSREPRVVSALQMLKQHLFKY--- 119 (261)
T ss_dssp EEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT---
T ss_pred EEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhHHhhCCCCCHHHHHHHHHHHHHHh---
Confidence 68999999986 45578899999999999999999999999999999999999999999999999999999998765
Q ss_pred ccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEeeCCChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHhhhccCC
Q 028888 80 WWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAAIGKGRQAAKTEIEKLKLSEMTCRQGVIEVAKIIYGVHDEAKD 159 (202)
Q Consensus 80 ~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~~~~ 159 (202)
.+||++++||+|||++||+||++||+|++.+++++|+|+|++.++++||+.|+++||++||++++++||..+.+++..
T Consensus 120 --~~~~gv~llvaG~D~~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eEA~~la~~al~~a~~rD~~ 197 (261)
T 3nzj_H 120 --QGHIGAYLIVAGVDPTGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLG 197 (261)
T ss_dssp --TTCSCEEEEEEEEETTEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTT
T ss_pred --cCcccEEEEEEEEeCCCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhCCC
Confidence 469999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred CCceEEEEEEEec
Q 028888 160 KAFELEMSWVCDE 172 (202)
Q Consensus 160 ~~~~iei~~i~~~ 172 (202)
++.+++|++|+++
T Consensus 198 sg~~iev~vI~kd 210 (261)
T 3nzj_H 198 SGSNVDVCVMEIG 210 (261)
T ss_dssp CCSCEEEEEEETT
T ss_pred CCCcEEEEEEECC
Confidence 7788999999986
No 46
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=2.6e-32 Score=212.03 Aligned_cols=154 Identities=15% Similarity=0.080 Sum_probs=133.5
Q ss_pred CcccccCCCC-CcccCCcCceEEe-cCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|.++| ++.+++.+||++| ++|++|+++|..+|++.|.+.+|.+++.|++ +. ...++.+.+.+++
T Consensus 14 laaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~------~~---~~~~~~l~~~~~~ 84 (174)
T 1g3k_A 14 VGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQG------HL---LKSAVELAKDWRT 84 (174)
T ss_dssp EEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTT------CH---HHHHHHHHHHHHH
T ss_pred EEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhcC------cH---HHHHHHHHHHHHh
Confidence 6899999998 5667889999999 9999999999999999999999999999985 33 3444444555566
Q ss_pred cccccceeeeEEEEEEeCCCCeEEEECCCcceeeee---EEeeCCChHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhh
Q 028888 79 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYF---GAAIGKGRQAAKTEIEKLKL-SEMTCRQGVIEVAKIIYGVH 154 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~---~~a~G~gs~~~~~~Le~~~~-~~~s~~eai~la~~~l~~~~ 154 (202)
++..||++ ++++|+| ||+||++||+|++.+++ ++|+|+|++.++++||+.|+ ++||.+ +++++||+.+.
T Consensus 85 ~~~~r~~~--~~l~g~d--~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~~---~l~~~al~~a~ 157 (174)
T 1g3k_A 85 DRALRKLE--AMLIVAD--EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSAH---EIVEKSLRIAG 157 (174)
T ss_dssp STTGGGCC--CEEEEEC--SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCHH---HHHHHHHHHHH
T ss_pred ccCcCcce--EEEEEEC--CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCHH---HHHHHHHHHHH
Confidence 66778865 6778887 89999999999999988 99999999999999999999 999954 79999999999
Q ss_pred hccCCCCceEEEEEEE
Q 028888 155 DEAKDKAFELEMSWVC 170 (202)
Q Consensus 155 ~~~~~~~~~iei~~i~ 170 (202)
+++..++.+++|.+|+
T Consensus 158 ~rd~~sg~~i~v~~i~ 173 (174)
T 1g3k_A 158 DICVFTNTNFTIEELP 173 (174)
T ss_dssp HHCTTCCSCCEEEEEC
T ss_pred HhccccCCceEEEEec
Confidence 9987778889999885
No 47
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=99.98 E-value=4.6e-32 Score=210.06 Aligned_cols=152 Identities=16% Similarity=0.170 Sum_probs=131.5
Q ss_pred CcccccCCCC-CcccCCcCceEEe-cCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhh
Q 028888 1 MGVEKLIASK-MMLPGSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTL 78 (202)
Q Consensus 1 la~d~r~~~~-l~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~ 78 (202)
||+|+|.++| ++.+++.+|||+| ++|++|+++|..+|++.|.+.+|.+++.|+++ .++.++++ .+.+++
T Consensus 14 laaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~~-----~~~~~~~l----~~~~~~ 84 (171)
T 1m4y_A 14 MGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGN-----LTKAAVEL----AKDWRT 84 (171)
T ss_dssp EEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTTTC-----HHHHHHHH----HHHHHH
T ss_pred EEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhccc-----HHHHHHHH----HHHHHH
Confidence 6899999987 5667889999999 99999999999999999999999999998754 24444443 444555
Q ss_pred cccccceeeeEEEEEEeCCCCeEEEECCCcceeeee--EEeeCCChHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHhhh
Q 028888 79 YWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYF--GAAIGKGRQAAKTEIEKLKL-SEMTCRQGVIEVAKIIYGVHD 155 (202)
Q Consensus 79 ~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~--~~a~G~gs~~~~~~Le~~~~-~~~s~~eai~la~~~l~~~~~ 155 (202)
+++.|||++++|++ | ||+||++||+|++.+++ +.|+|+|++.++++||+.|+ ++||. ++++++||+.+.+
T Consensus 85 ~~~~~~~~~~~lv~--D--~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~---~~l~~~al~~a~~ 157 (171)
T 1m4y_A 85 DRVLRRLEALLLVA--D--KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA---REIVEKAMTIAGE 157 (171)
T ss_dssp CTTGGGCCCEEEEE--C--SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH---HHHHHHHHHHHHH
T ss_pred hCCCCceEEEEEEE--c--CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH---HHHHHHHHHHHHH
Confidence 56678999998888 5 89999999999999988 99999999999999999999 99996 6789999999999
Q ss_pred ccCCCCceEEEEE
Q 028888 156 EAKDKAFELEMSW 168 (202)
Q Consensus 156 ~~~~~~~~iei~~ 168 (202)
++..++.+++|.+
T Consensus 158 rd~~sg~~i~v~~ 170 (171)
T 1m4y_A 158 ICIYTNQNIVIEE 170 (171)
T ss_dssp HCTTCCSCCEEEE
T ss_pred hCcccCCeEEEEE
Confidence 9877777787764
No 48
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=99.97 E-value=9e-32 Score=210.16 Aligned_cols=153 Identities=14% Similarity=0.133 Sum_probs=134.4
Q ss_pred CcccccCCCC-C-cccCCcCceEEe-cCcEEEEEecchhhHHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhh
Q 028888 1 MGVEKLIASK-M-MLPGSNRRIHSV-HRHSGMAVAGLAADGRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCT 77 (202)
Q Consensus 1 la~d~r~~~~-l-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~ 77 (202)
||+|+|.++| + +.+++.+||++| ++|++|+++|..+|++.|.+.++.+++.|+ + .+.+.++++.+.++
T Consensus 19 laaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~---g------~~~~~~~~l~~~~~ 89 (180)
T 2z3b_A 19 MSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN---G------NLKRAAVELAKEWR 89 (180)
T ss_dssp EEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT---T------CHHHHHHHHHHHHH
T ss_pred EEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc---C------ChHHHHHHHHHHHH
Confidence 6899999996 5 677889999999 999999999999999999999999999987 3 23333444555666
Q ss_pred hcccccceeeeEEEEEEeCCCCeEEEECCCcceee--eeEEeeCCChHHHHHHHHhcCCC---CCCHHHHHHHHHHHHHH
Q 028888 78 LYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYR--YFGAAIGKGRQAAKTEIEKLKLS---EMTCRQGVIEVAKIIYG 152 (202)
Q Consensus 78 ~~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~--~~~~a~G~gs~~~~~~Le~~~~~---~~s~~eai~la~~~l~~ 152 (202)
++...|||++++||+ +||+||++||+|++.+ ++++|+|+|++.++++||+.|++ +||.+| ++.+||+.
T Consensus 90 ~~~~~rp~~~~~lva----d~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~~~mt~ee---l~~~al~~ 162 (180)
T 2z3b_A 90 SDKVLRKLEAMLIVM----NQDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASE---IARAALET 162 (180)
T ss_dssp HCTTGGGCCCCEEEE----CSSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHGGGCCHHH---HHHHHHHH
T ss_pred hhhCcCcceEEEEEE----cCCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccCCCCCHHH---HHHHHHHH
Confidence 777889999999999 4799999999999998 49999999999999999999998 999999 47799999
Q ss_pred hhhccCCCCceEEEEEE
Q 028888 153 VHDEAKDKAFELEMSWV 169 (202)
Q Consensus 153 ~~~~~~~~~~~iei~~i 169 (202)
+.+++..++.+++|.+|
T Consensus 163 a~~rd~~sg~~i~v~~i 179 (180)
T 2z3b_A 163 AGEICVYTNDQIILEEL 179 (180)
T ss_dssp HHHHCTTCCSCCEEEEE
T ss_pred HHHhcCccCCeEEEEEE
Confidence 99998888888888876
No 49
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=75.77 E-value=6.1 Score=27.69 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=26.6
Q ss_pred eEEEEEEEecCCCeEEEcCHHHHHHHHHHHHH
Q 028888 163 ELEMSWVCDESNRQHQKVPDELLEEAKAAARA 194 (202)
Q Consensus 163 ~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~ 194 (202)
.+-|.+++++||..+|.+|.+++-.+..+..+
T Consensus 68 ~~vVkVvD~~TgEVIRqIPpEe~L~l~~~l~e 99 (117)
T 2hc5_A 68 EYYVKVIEDSTNEVIREIPPKRWLDFYAAMTE 99 (117)
T ss_dssp EEEEEEEETTTTEEEEEECHHHHHHHHHHHHH
T ss_pred cEEEEEEECCCCcEEEeCChHHHHHHHHHHHH
Confidence 46688899999988999999999887776654
No 50
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=46.81 E-value=12 Score=30.61 Aligned_cols=45 Identities=11% Similarity=0.266 Sum_probs=31.4
Q ss_pred CeEEEECCCcceee-eeEEeeCCChHHHHHHHHhcCCCCCCHHHHH
Q 028888 99 PQLYMIEPSGISYR-YFGAAIGKGRQAAKTEIEKLKLSEMTCRQGV 143 (202)
Q Consensus 99 p~Ly~~d~~G~~~~-~~~~a~G~gs~~~~~~Le~~~~~~~s~~eai 143 (202)
|..|-+|+.|.+.. |.-.-.+.....++..|++.-.++|++.++|
T Consensus 103 r~tfiId~~G~i~~~~~~v~~~~h~~~~l~~~~~~~~~~~~~~~~I 148 (322)
T 4eo3_A 103 RSTFLIDRWGFVRKEWRRVKVEGHVQEVKEALDRLIEEDLSLNKHI 148 (322)
T ss_dssp CEEEEECTTSBEEEEEESCCSTTHHHHHHHHHHHHHHHHTSCCHHH
T ss_pred cEEEEECCCCEEEEEEeCCCccccHHHHHHHHhhhchhhhHHHHHH
Confidence 67899999999976 4445566777888877776644455555554
No 51
>2gx5_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, GAF domain; HET: PG4 P6G PCG PGE; 1.74A {Bacillus subtilis} PDB: 2b18_A 2hgv_A*
Probab=38.48 E-value=1.2e+02 Score=22.46 Aligned_cols=72 Identities=13% Similarity=0.280 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhHHHhCCCCCHHHHHHHHHHHHHHhhhcccccceeeeEEEEEEeCCCCeEEEECCCcceeeeeEEe
Q 028888 38 GRQIVTRAKSEATNYESVYGEPIPVKELAQRVASYVHLCTLYWWLRPFGCGVILGGYDRDGPQLYMIEPSGISYRYFGAA 117 (202)
Q Consensus 38 ~~~l~~~~r~~~~~~~~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~iiaG~D~~gp~Ly~~d~~G~~~~~~~~a 117 (202)
-..|.++.|+.-..-+...+.+++...+|..|++.+.. .+|-+++.|....+ +..
T Consensus 10 ~~~LL~KtRkIN~lLq~~~~~~v~f~eia~vLs~vL~~------------------------NvyIvs~~GkiLG~-~~~ 64 (170)
T 2gx5_A 10 HMALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDS------------------------NIFVVSRRGKLLGY-SIN 64 (170)
T ss_dssp CHHHHHHHHHHHHHHHSCCCSCCCHHHHHHHHHHHHTS------------------------EEEEEETTSBEEEE-ECS
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHhCC------------------------CEEEEcCCCCEEEE-ecc
Confidence 35688888888877777778999999999999998832 23444566665443 222
Q ss_pred eCCChHHHHHHHHhcCC
Q 028888 118 IGKGRQAAKTEIEKLKL 134 (202)
Q Consensus 118 ~G~gs~~~~~~Le~~~~ 134 (202)
-+.....+..+++....
T Consensus 65 ~~~~~~~~~~~~~~~~f 81 (170)
T 2gx5_A 65 QQIENDRMKKMLEDRQF 81 (170)
T ss_dssp SCCCCHHHHHHHHHTBC
T ss_pred cccchHHHHHHHhcCcC
Confidence 33445556667766543
No 52
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=32.83 E-value=83 Score=20.66 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHHH
Q 028888 134 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAARA 194 (202)
Q Consensus 134 ~~~~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~~ 194 (202)
.++++.++..+.+...++.. .+..+.+.|++++ |-+.-+.+++|+++.++-++.
T Consensus 23 ~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DEe-GD~itisSd~EL~eAl~l~~~ 76 (89)
T 1vd2_A 23 EPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDEE-GDPCTVSSQLELEEAFRLYEL 76 (89)
T ss_dssp CTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCSS-SCCEECCSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECCC-CCcccccCHHHHHHHHHHHHc
Confidence 45788888888766644321 1233778999986 767888899999999885554
No 53
>4ayb_H DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_H 2y0s_H 2waq_H 4b1o_H 4b1p_Z 2pmz_H 3hkz_H
Probab=31.26 E-value=38 Score=22.13 Aligned_cols=23 Identities=9% Similarity=-0.046 Sum_probs=19.3
Q ss_pred CeEEEcCHHHHHHHHHHHHHhhh
Q 028888 175 RQHQKVPDELLEEAKAAARAALE 197 (202)
Q Consensus 175 ~~~~~l~~~~i~~~~~~~~~~~~ 197 (202)
++++.|+++|.+++++++.-.++
T Consensus 18 PkH~vLs~eE~~~ll~~y~i~~~ 40 (84)
T 4ayb_H 18 PKHEVLSIDEAYKILKELGIRPE 40 (84)
T ss_dssp CEEEECCHHHHHHHHHHHTCCGG
T ss_pred CCeEECCHHHHHHHHHHhcCCHh
Confidence 46999999999999998876544
No 54
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans}
Probab=30.79 E-value=1.2e+02 Score=21.62 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=18.9
Q ss_pred EcCHHHHHHHHHHHHHhhhhcc
Q 028888 179 KVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 179 ~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
.|+++||+..++++..+.+++.
T Consensus 117 ~Ls~~ei~~~~~~a~~~~~~D~ 138 (151)
T 3dqg_A 117 GLSKDQIENMIKEAEKNAAEDA 138 (151)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhH
Confidence 3899999999999988887764
No 55
>1hmj_A RPB5, protein (subunit H); RNA polymerase, archaea; NMR {Methanocaldococcus jannaschii} SCOP: d.78.1.1
Probab=29.49 E-value=29 Score=22.40 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=19.9
Q ss_pred CeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 175 RQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 175 ~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
.++..|+++|.+++|+++...+++
T Consensus 10 PkH~iLs~eEk~~lL~~y~i~~~q 33 (78)
T 1hmj_A 10 PKHEIVPKEEVEEILKRYNIKIQQ 33 (78)
T ss_pred CCeEECCHHHHHHHHHHcCCCHHH
Confidence 359999999999999998766554
No 56
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens}
Probab=28.59 E-value=1.2e+02 Score=22.46 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=18.5
Q ss_pred EcCHHHHHHHHHHHHHhhhhcc
Q 028888 179 KVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 179 ~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
.|+++||+..++++..+.+++.
T Consensus 137 ~Ls~eei~~mi~~a~~~~~eD~ 158 (182)
T 3n8e_A 137 GLSKDDIENMVKNAEKYAEEDR 158 (182)
T ss_dssp CCCHHHHHHHHHHHHHSHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhHH
Confidence 3899999999999988877653
No 57
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=27.52 E-value=81 Score=18.57 Aligned_cols=32 Identities=0% Similarity=-0.039 Sum_probs=21.9
Q ss_pred HHHHHHhc-CCCCCCHH--HHHHHHHHHHHHhhhc
Q 028888 125 AKTEIEKL-KLSEMTCR--QGVIEVAKIIYGVHDE 156 (202)
Q Consensus 125 ~~~~Le~~-~~~~~s~~--eai~la~~~l~~~~~~ 156 (202)
+..||... ....++.+ |.++.|++||..+++-
T Consensus 9 Ii~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v 43 (52)
T 4gof_A 9 IIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGV 43 (52)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCC
Confidence 34555544 22455544 7899999999999865
No 58
>1eik_A RNA polymerase subunit RPB5; RPBH, OCSP, NESG, protein structure initiative, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.78.1.1
Probab=26.52 E-value=33 Score=22.09 Aligned_cols=24 Identities=13% Similarity=0.076 Sum_probs=19.9
Q ss_pred CeEEEcCHHHHHHHHHHHHHhhhh
Q 028888 175 RQHQKVPDELLEEAKAAARAALEE 198 (202)
Q Consensus 175 ~~~~~l~~~~i~~~~~~~~~~~~~ 198 (202)
+++..|+++|.+++|+++.-.+++
T Consensus 12 PkH~iLs~eEk~~lL~~y~i~~~q 35 (77)
T 1eik_A 12 PEHVILNESEAKRVLKELDAHPEQ 35 (77)
T ss_dssp CEEEEECHHHHHHHHHHTTCCTTT
T ss_pred CCEEEcCHHHHHHHHHHcCCCHHH
Confidence 469999999999999988765543
No 59
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=26.11 E-value=1.5e+02 Score=19.82 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=20.0
Q ss_pred HhHHHhCCCCCHHHHHHHHHHHHHHhh--hcccccce
Q 028888 51 NYESVYGEPIPVKELAQRVASYVHLCT--LYWWLRPF 85 (202)
Q Consensus 51 ~~~~~~~~~i~~~~la~~ls~~~~~~~--~~~~~rP~ 85 (202)
.++|+.| +++...|..+.++.-.-+ ...++|||
T Consensus 41 lr~YR~G--~~I~~Fc~kLl~LyG~~Rk~LL~gmRpF 75 (98)
T 4fqn_A 41 LHEYRNG--ASIHEFCINLRQLYGDSRKFLLLGLRPF 75 (98)
T ss_dssp HHHHHTT--CCHHHHHHHHHHHHCGGGGGGGGGGGGG
T ss_pred HHHHHcC--CCHHHHHHHHHHHhchHHHHHHhhccCC
Confidence 3455666 678888877776653222 22567887
No 60
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=23.41 E-value=1.2e+02 Score=20.02 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=22.6
Q ss_pred HHHHHHhc-CCCCCCHH--HHHHHHHHHHHHhhhc
Q 028888 125 AKTEIEKL-KLSEMTCR--QGVIEVAKIIYGVHDE 156 (202)
Q Consensus 125 ~~~~Le~~-~~~~~s~~--eai~la~~~l~~~~~~ 156 (202)
+..||... ....++.+ |.++.|++||..+++-
T Consensus 26 IIdFL~~sv~~~~ls~D~~ESLEVAIqCI~~AF~V 60 (92)
T 4asv_A 26 IVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 60 (92)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 34556554 34556655 7899999999999864
No 61
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=22.93 E-value=44 Score=20.31 Aligned_cols=33 Identities=21% Similarity=0.196 Sum_probs=21.6
Q ss_pred EeeCCChHHHHHHHHhcC--CCCCCHHHHHHHHHH
Q 028888 116 AAIGKGRQAAKTEIEKLK--LSEMTCRQGVIEVAK 148 (202)
Q Consensus 116 ~a~G~gs~~~~~~Le~~~--~~~~s~~eai~la~~ 148 (202)
.+.|+....+...+.+.. .++++.++.|..+++
T Consensus 25 ~aLGY~~~ea~kav~~v~~~~~~~~~e~lIr~ALk 59 (62)
T 1ixs_A 25 AALGFKEAQARAVVLDLLAQNPKARAQDLIKEALK 59 (62)
T ss_dssp HHTTCCHHHHHHHHHHHHHHCTTCCHHHHHHHHHT
T ss_pred HHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 346888877777776653 346777777666544
No 62
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans}
Probab=22.44 E-value=1.9e+02 Score=20.54 Aligned_cols=22 Identities=9% Similarity=0.095 Sum_probs=17.3
Q ss_pred EcCHHHHHHHHHHHHHhhhhcc
Q 028888 179 KVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 179 ~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
.|+++||+..+.++..+.+++.
T Consensus 118 ~Ls~~ei~~~~~~a~~~~~~D~ 139 (152)
T 3dob_A 118 RLTQSDIDRMVHEAKQFEKEDG 139 (152)
T ss_dssp --CHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhH
Confidence 4899999999999988877653
No 63
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=21.93 E-value=1.5e+02 Score=18.80 Aligned_cols=32 Identities=6% Similarity=-0.022 Sum_probs=22.6
Q ss_pred HHHHHHhc-CCCCCCHH--HHHHHHHHHHHHhhhc
Q 028888 125 AKTEIEKL-KLSEMTCR--QGVIEVAKIIYGVHDE 156 (202)
Q Consensus 125 ~~~~Le~~-~~~~~s~~--eai~la~~~l~~~~~~ 156 (202)
+..||... ....++.+ |.++.|++||..+++-
T Consensus 14 Ii~FL~~~~~~~~ls~D~~ESLeVAiqCI~~aF~v 48 (74)
T 2lxb_A 14 IVNYFSSIVEKKEISEDGADSLNVAMDCISEAFGF 48 (74)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcccCCcCHHHHHHHHHHHHHHHHHhCC
Confidence 34556554 33456655 7899999999999865
No 64
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.85 E-value=1.6e+02 Score=19.80 Aligned_cols=50 Identities=16% Similarity=0.066 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHH
Q 028888 134 LSEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 193 (202)
Q Consensus 134 ~~~~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~ 193 (202)
.++.+.+|...+++..+ ++.. ++|.+.+++ |-...+.++.|.++.++-+.
T Consensus 33 ~~~~tweel~~mvk~~f-------~L~~--~~IkY~DEe-nD~V~i~Sq~E~eEAlkva~ 82 (101)
T 1wj6_A 33 PENTTWADIEAMVKVSF-------DLNT--IQIKYLDEE-NEEVSINSQGEYEEALKMAV 82 (101)
T ss_dssp TTTSCHHHHHHHHHHHH-------CCSS--BCCEEECTT-SCEECCCSHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc-------CCCc--eEEEEecCC-CCEEEEecHHHHHHHHHHhc
Confidence 35778888887766555 4444 467888876 66899999999999998544
No 65
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Probab=21.68 E-value=2.2e+02 Score=20.18 Aligned_cols=22 Identities=14% Similarity=0.142 Sum_probs=18.4
Q ss_pred EcCHHHHHHHHHHHHHhhhhcc
Q 028888 179 KVPDELLEEAKAAARAALEEMD 200 (202)
Q Consensus 179 ~l~~~~i~~~~~~~~~~~~~~~ 200 (202)
.|+++||+..++++..+.+++.
T Consensus 118 ~ls~~ei~~~~~~a~~~~~~D~ 139 (152)
T 3h0x_A 118 RLTQEEIDRMVEEAEKFASEDA 139 (152)
T ss_dssp CCCHHHHHHHHHHHHHTHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhH
Confidence 4899999999999988877653
No 66
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=20.32 E-value=1.9e+02 Score=18.91 Aligned_cols=49 Identities=16% Similarity=0.083 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHHhhhccCCCCceEEEEEEEecCCCeEEEcCHHHHHHHHHHHH
Q 028888 135 SEMTCRQGVIEVAKIIYGVHDEAKDKAFELEMSWVCDESNRQHQKVPDELLEEAKAAAR 193 (202)
Q Consensus 135 ~~~s~~eai~la~~~l~~~~~~~~~~~~~iei~~i~~~~~~~~~~l~~~~i~~~~~~~~ 193 (202)
++.+.++...+....+ ++.. ++|.+.+++ |-...+.|+.|.++.++-+.
T Consensus 26 ~~~tweel~~mvk~~f-------~L~~--~~ikY~DEe-nD~v~i~Sq~E~eEAlkva~ 74 (87)
T 2bkf_A 26 ENTTWADIEAMVKVSF-------DLNT--IQIKYLDEE-NEEVSINSQGEYEEALKMAV 74 (87)
T ss_dssp GGCCHHHHHHHHHHHH-------TCSS--EEEEEECTT-SCEEEECSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc-------CCCc--eEEEEEcCC-CCEEEEecHHHHHHHHHHhc
Confidence 4677788777765555 4444 678988876 66899999999999998544
No 67
>2kxe_A DNA polymerase II small subunit; D-family, archara, helical BU transferase; HET: DNA; NMR {Pyrococcus horikoshii}
Probab=20.20 E-value=76 Score=19.76 Aligned_cols=25 Identities=4% Similarity=-0.226 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCC-CCCHHHHHHHHH
Q 028888 123 QAAKTEIEKLKLS-EMTCRQGVIEVA 147 (202)
Q Consensus 123 ~~~~~~Le~~~~~-~~s~~eai~la~ 147 (202)
..|+-.|..+|++ +.|+-|.|+.|+
T Consensus 20 PsAYyLL~~~ykkg~FsL~ELiKFAk 45 (75)
T 2kxe_A 20 PSAYYLLVGHFNEGKFSLIELIKFAK 45 (75)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHH
T ss_pred chHHHHHHHHhhcccccHHHHHHHHH
Confidence 4567788888887 899999988765
Done!