Citrus Sinensis ID: 028890

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSVLGSSRCV
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccccEEEEccccccccccccccccccccccccccccccccccEEEEEccccHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEcccccHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccccccccEEEEccccccccccccccccccccEEccccccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEEccccccccHHHHccEEEEEcccccHHHHHHHHccccEEEEEcccccccccEEEEccHHHHHHHHHHHHccccEEEEEEccccccccHHHccccccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MRTIVSRLINSRSSVSRLSAITasgngrylstdsnkvdeplkveeaetvnvppppsekllvlggngfvgsHICREALDRGLTVASLSrsgrsslrdswANNVIWhqgnllssdsWKEALDGVTAVISCvggfgsnsymYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQsvlgssrcv
Flexible Loop (DISEMBL)
MRTIVSRlinsrssvsrlsaitasgngrylstdsnkvdeplkveeaetvnvppppsEKLLVLGGNGFVGSHICREALDRGLTVASLSRsgrsslrdswANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQsvlgssrcv
Low Complexity Region (SEG)
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAslsrsgrsslrdsWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSVLGSSRCV
Disordered region (IsUnstruct)
**********************************************************LLVLGGNGFVGSHICREALDRGLTVASL*******LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSV*******
Disordered Region (DISOPRED)
*********************************************************KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSVLGSSRC*
Disordered Region (DISEMBL)
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS********
Disordered Region (DISPRO)
************SSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSVLGSSRCV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
Q9FVR6	296	Uncharacterized protein A	no	no	0.628	0.429	0.472	2e-29
Q05892	277	Uncharacterized protein Y	yes	no	0.361	0.263	0.410	2e-10
O78472	314	Uncharacterized protein y	yes	no	0.534	0.343	0.321	7e-07
P51238	319	Uncharacterized protein y	N/A	no	0.519	0.329	0.339	7e-07
Q3ZBE9	356	Sterol-4-alpha-carboxylat	yes	no	0.534	0.303	0.305	9e-07
Q1XDP9	319	Uncharacterized protein y	N/A	no	0.519	0.329	0.339	1e-06
O74482	276	Uncharacterized protein C	yes	no	0.396	0.289	0.349	2e-06
O53454	370	3 beta-hydroxysteroid deh	yes	no	0.514	0.281	0.322	2e-06
Q5PPL3	362	Sterol-4-alpha-carboxylat	yes	no	0.519	0.290	0.307	3e-06
Q9R1J0	362	Sterol-4-alpha-carboxylat	yes	no	0.524	0.292	0.284	2e-05

>sp|Q9FVR6|Y1222_ARATH Uncharacterized protein At1g32220, chloroplastic OS=Arabidopsis thaliana GN=At1g32220 PE=1 SV=1

 Score =  129 bits (323), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 61/129 (47%), Positives = 87/129 (67%), Gaps = 2/129 (1%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           SE+++VLGGNGFVGS IC+ A+  G+ V S+SRSGR +  DSW + V W  G++   + W
Sbjct: 62  SERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWVTGDVFYLN-W 120

Query: 116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYL 175
            E L G TAV+S +GGFG+   M +ING AN+ A+ AA + GV +FV I+  D+ +  ++
Sbjct: 121 DEVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFI 180

Query: 176 L-QGYYEGK 183
           L  GY+ GK
Sbjct: 181 LSNGYFTGK 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q05892|YL290_YEAST Uncharacterized protein YLR290C, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YLR290C PE=1 SV=1

 Score = 65.9 bits (159), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 5/78 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS----SLRD-SWANNVIWHQGNLLSS 112
           KL+V GGNGF+G  IC+EA+  G  V S+SRSG++     L D  W   V W   ++   
Sbjct: 4   KLIVFGGNGFLGKRICQEAVTSGYQVVSVSRSGKAPHSNELNDKQWMQEVQWTAADIFKP 63

Query: 113 DSWKEALDGVTAVISCVG 130
           DS+ E L+  T V+  +G
Sbjct: 64  DSYHELLNNATNVVHSLG 81

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O78472|YCF39_GUITH Uncharacterized protein ycf39 OS=Guillardia theta GN=ycf39 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/112 (32%), Positives = 55/112 (49%), Gaps = 4/112 (3%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LRDSWANNVIWHQGNLLSSDSWKE 117
           LLV+G  G +G  I R ALD G  V+ L R+ R +     W   +++  G+L   ++   
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYEVSCLVRNLRKAYFLKEWGAELLY--GDLSLPETLPT 60

Query: 118 ALDGVTAVISCVGGFGSNSYM-YKINGTANINAIRAASEKGVKRFVYISAAD 168
            L  +TA+I       S+ Y   KI+    I  + AA   G+KRFV+ S  +
Sbjct: 61  NLTKITAIIDASTARPSDPYKAEKIDLEGKIALVEAAKVAGIKRFVFFSVLN 112

Guillardia theta (taxid: 55529)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P51238|YCF39_PORPU Uncharacterized protein ycf39 OS=Porphyra purpurea GN=ycf39 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGR-SSLRDSWANNVIWHQGNLLSSDSWKE 117
           LLV+G  G +G  I R ALD G  V  + R+ R S+    W   +++  G+L   +S  +
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAFLKEWGAELVY--GDLKLPESILQ 60

Query: 118 ALDGVTAVISCVGGFGSNSY-MYKINGTANINAIRAASEKGVKRFVYIS 165
           +  GVTAVI       S+ Y   +I+    I  I AA    V+RF++ S
Sbjct: 61  SFCGVTAVIDASTSRPSDPYNTEQIDLDGKIALIEAAKAAKVQRFIFFS 109

Porphyra purpurea (taxid: 2787)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q3ZBE9|NSDHL_BOVIN Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Bos taurus GN=NSDHL PE=2 SV=1

 Score = 53.5 bits (127), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 10/118 (8%)

Query: 54  PPSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSS 112
           P +++  V+GG GF+G H+  + L RG  V     R G  + R      V +  G+L S 
Sbjct: 18  PKAKRCTVIGGCGFLGQHMVEQLLARGYAVNVFDIRQGFDNPR------VQFFLGDLCSQ 71

Query: 113 DSWKEALDGVTAVISCVG--GFGSNSYM-YKINGTANINAIRAASEKGVKRFVYISAA 167
                AL GV+ V  C     F +N  + Y++N     N I    E GV++ +  S+A
Sbjct: 72  QDLYPALKGVSTVFHCASPPPFNNNKELFYRVNYIGTKNVIETCKEAGVQKLILTSSA 129

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

>sp|Q1XDP9|YCF39_PORYE Uncharacterized protein ycf39 OS=Porphyra yezoensis GN=ycf39 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 54/109 (49%), Gaps = 4/109 (3%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGR-SSLRDSWANNVIWHQGNLLSSDSWKE 117
           LLV+G  G +G  I R ALD G  V  + R+ R S+    W   +I+  G+L   +S  +
Sbjct: 3   LLVIGATGTLGRQIVRRALDEGYNVKCMVRNLRKSAFLKEWGAELIY--GDLKLPESILQ 60

Query: 118 ALDGVTAVISCVGGFGSNSY-MYKINGTANINAIRAASEKGVKRFVYIS 165
           +  GVTA+I        + Y   KI+    I  I AA    V+RF++ S
Sbjct: 61  SFCGVTAIIDASTSRLPDPYNAEKIDLDGKIALIEAAKAAKVERFIFFS 109

Porphyra yezoensis (taxid: 2788)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O74482|YQJ9_SCHPO Uncharacterized protein C1840.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1840.09 PE=3 SV=1

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 48/83 (57%), Gaps = 3/83 (3%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLS-SDS 114
           K++VLGG+GF+G +IC+ A+ +G  V S+SR G   L  ++ W ++V W   +     +S
Sbjct: 2   KIVVLGGSGFLGHNICKLAIAKGYEVVSVSRRGAGGLHNKEPWMDDVEWETLDAQKDPNS 61

Query: 115 WKEALDGVTAVISCVGGFGSNSY 137
               L   +AV++ VG    N+Y
Sbjct: 62  LLPVLRDASAVVNSVGILMENNY 84

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|O53454|3BHS_MYCTU 3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase OS=Mycobacterium tuberculosis GN=Rv1106c PE=1 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 17/121 (14%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++LV GG GFVG+++    LDRG  V S  R+   SL  +     +  QG++  +D    
Sbjct: 16  RVLVTGGAGFVGANLVTTLLDRGHWVRSFDRA--PSLLPAHPQLEVL-QGDITDADVCAA 72

Query: 118 ALDGV------TAVISCVGG------FGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
           A+DG+       A+I  +GG      +   S+   + GT N+  + A    GV+RFVY S
Sbjct: 73  AVDGIDTIFHTAAIIELMGGASVTDEYRQRSFAVNVGGTENL--LHAGQRAGVQRFVYTS 130

Query: 166 A 166
           +
Sbjct: 131 S 131

3-beta-HSD is a bifunctional enzyme, that catalyzes the oxidation and isomerization of cholesterol, pregnenolone, and dehydroepiandrosterone (DHEA) into cholest-4-en-3-one, progesterone, and androsterone, respectively.

Mycobacterium tuberculosis (taxid: 1773)

EC: 5

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

>sp|Q5PPL3|NSDHL_RAT Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Rattus norvegicus GN=Nsdhl PE=2 SV=1

 Score = 52.0 bits (123), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++K  V+GG+GF+G H+  + L RG  V     R G  + R      V +  G+L +   
Sbjct: 26  AKKCTVIGGSGFLGQHMVEQLLSRGYAVNVFDVRQGFDNPR------VQFFIGDLCNQQD 79

Query: 115 WKEALDGVTAVISCVGGFGSNS----YMYKINGTANINAIRAASEKGVKRFVYISAA 167
              AL GV+ V  C     SNS      Y++N T     I    E GV++ +  S+A
Sbjct: 80  LYPALKGVSTVFHCASP-PSNSNNKELFYRVNSTGTKTVIETCKEAGVQKLILTSSA 135

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

>sp|Q9R1J0|NSDHL_MOUSE Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating OS=Mus musculus GN=Nsdhl PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 55/116 (47%), Gaps = 10/116 (8%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++K  V+GG+GF+G H+  + L+RG TV       G  + R      V +  G+L +   
Sbjct: 26  AKKCTVIGGSGFLGQHMVEQLLERGYTVNVFDIHQGFDNPR------VQFFIGDLCNQQD 79

Query: 115 WKEALDGVTAVISCVG--GFGSNSYM-YKINGTANINAIRAASEKGVKRFVYISAA 167
              AL GV+ V  C     + +N  + Y++N       I    E GV++ +  S+A
Sbjct: 80  LYPALKGVSTVFHCASPPPYSNNKELFYRVNFIGTKTVIETCREAGVQKLILTSSA 135

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 7

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
224089442	288	predicted protein [Populus trichocarpa]	0.905	0.635	0.830	2e-87
224142023	287	predicted protein [Populus trichocarpa]	0.905	0.637	0.836	2e-85
449441836	287	PREDICTED: uncharacterized protein At1g3	0.905	0.637	0.830	4e-85
225430578	287	PREDICTED: uncharacterized protein At1g3	0.905	0.637	0.841	2e-80
217073926	199	unknown [Medicago truncatula]	0.896	0.909	0.804	5e-80
297811177	287	catalytic/ coenzyme binding protein [Ara	0.905	0.637	0.825	8e-80
255548648	281	conserved hypothetical protein [Ricinus	0.816	0.587	0.872	1e-79
388507480	282	unknown [Lotus japonicus]	0.886	0.634	0.792	1e-79
18416362	287	Rossmann-fold NAD(P)-binding domain-cont	0.905	0.637	0.825	8e-77
356507149	287	PREDICTED: uncharacterized protein At1g3	0.905	0.637	0.825	1e-75

>gi|224089442|ref|XP_002308721.1| predicted protein [Populus trichocarpa] gi|222854697|gb|EEE92244.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 170/183 (92%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M ++ SRLI+SR+S+S+L  +  S NGRYLSTDSNKVDEP KVEEAET+NVPPPP+EKLL
Sbjct: 1   MTSLTSRLIHSRTSLSKLYTMAVSSNGRYLSTDSNKVDEPFKVEEAETLNVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EA+DRGLTVASLSRSGR S+++SW NNVIWHQGNLLSSDSW +AL+
Sbjct: 61  VLGGNGFVGSHICKEAVDRGLTVASLSRSGRPSIQESWVNNVIWHQGNLLSSDSWMQALN 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGS SYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ NYLLQGYY
Sbjct: 121 GVTSVISCVGGFGSQSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLVNYLLQGYY 180

Query: 181 EGK 183
           EGK
Sbjct: 181 EGK 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142023|ref|XP_002324359.1| predicted protein [Populus trichocarpa] gi|222865793|gb|EEF02924.1| predicted protein [Populus trichocarpa]

 Score =  320 bits (821), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 153/183 (83%), Positives = 167/183 (91%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M  + SRLI SR+S+S+L  I AS NGRYLSTDSNKVDEP KVEEAETVNVPPP +EKLL
Sbjct: 1   MTPLTSRLIQSRTSLSKLFTIAASRNGRYLSTDSNKVDEPFKVEEAETVNVPPPSTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EA+DRGLTVASLSRSGR S+ D+W NNVIWHQG+LLSS SW EAL+
Sbjct: 61  VLGGNGFVGSHICKEAVDRGLTVASLSRSGRPSIHDAWVNNVIWHQGSLLSSYSWTEALN 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGS SYMYKINGTANINAIRAASEKGVKRFVYIS+ADFG+ANYLLQGYY
Sbjct: 121 GVTSVISCVGGFGSQSYMYKINGTANINAIRAASEKGVKRFVYISSADFGLANYLLQGYY 180

Query: 181 EGK 183
           EGK
Sbjct: 181 EGK 183

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441836|ref|XP_004138688.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic-like [Cucumis sativus] gi|449493285|ref|XP_004159244.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic-like [Cucumis sativus]

 Score =  319 bits (817), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 152/183 (83%), Positives = 165/183 (90%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M + +SRLI+SRSS  +L  + AS  GR  STDSNK+DEP KVEEAETVNVPPPP+EKLL
Sbjct: 1   MSSTLSRLIHSRSSFPKLYTMAASRGGRPFSTDSNKIDEPFKVEEAETVNVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EAL+RGLTVASLSRSGRSS+RDSWANNVIWHQGNLLS DS  EA D
Sbjct: 61  VLGGNGFVGSHICQEALNRGLTVASLSRSGRSSIRDSWANNVIWHQGNLLSPDSLSEAFD 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVTAVISC+GGFGSNS MYKINGTANINAIR AS+KGVKRFVYISAADFG+ANYLLQGYY
Sbjct: 121 GVTAVISCIGGFGSNSQMYKINGTANINAIRVASDKGVKRFVYISAADFGLANYLLQGYY 180

Query: 181 EGK 183
           EGK
Sbjct: 181 EGK 183

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430578|ref|XP_002263819.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic [Vitis vinifera] gi|296082186|emb|CBI21191.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (778), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 154/183 (84%), Positives = 171/183 (93%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           M+TI+S+LI+SRSS+SR  A+ A  NGR LSTDSNKVDEPLKVEEAETV++PPPP+EKLL
Sbjct: 1   MKTIISQLIHSRSSLSRFYAMAAFRNGRCLSTDSNKVDEPLKVEEAETVDIPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHIC+EAL RG+ VASLSRSGRSS+ D WANN+ WH+GNLLSSDSWKEAL 
Sbjct: 61  VLGGNGFVGSHICKEALSRGIAVASLSRSGRSSINDPWANNIEWHRGNLLSSDSWKEALS 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGS+SYMYKINGTANINAIRAA+EKGVKRFVYISAADFGVANYLLQGYY
Sbjct: 121 GVTSVISCVGGFGSSSYMYKINGTANINAIRAAAEKGVKRFVYISAADFGVANYLLQGYY 180

Query: 181 EGK 183
           EGK
Sbjct: 181 EGK 183

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073926|gb|ACJ85323.1| unknown [Medicago truncatula]

 Score =  302 bits (774), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 148/184 (80%), Positives = 167/184 (90%), Gaps = 3/184 (1%)

Query: 1   MRTIVSRLINSRS-SVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKL 59
           M+TI+SRLI+S S S+SRL+A+  S NGR   TDSNK+DEP KVEEAETV  PPPP+EKL
Sbjct: 1   MKTIISRLIHSSSFSISRLNAMAVSINGRSFCTDSNKIDEPFKVEEAETV--PPPPTEKL 58

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LVLGGNGFVGSH+CREAL+ GL+VASLSRSG+SSL DSWA NVIW++GNLLS++S KEAL
Sbjct: 59  LVLGGNGFVGSHVCREALNHGLSVASLSRSGKSSLHDSWATNVIWYKGNLLSTESLKEAL 118

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGY 179
           +GVTAVISCVGGFGSNS MYKINGTANINAIRAASE+GVKRF+YISAADFGV NYLLQGY
Sbjct: 119 NGVTAVISCVGGFGSNSSMYKINGTANINAIRAASEQGVKRFIYISAADFGVVNYLLQGY 178

Query: 180 YEGK 183
           YEGK
Sbjct: 179 YEGK 182

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811177|ref|XP_002873472.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319309|gb|EFH49731.1| catalytic/ coenzyme binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  301 bits (772), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 171/183 (93%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRTIVSRLI  +SS+S++   +ASG GRYLSTDSNK+DEP  VEEAETV+VPPPP+EKLL
Sbjct: 1   MRTIVSRLIRYKSSLSQIRFASASGGGRYLSTDSNKIDEPFNVEEAETVHVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSH+C+EALDRGL+V+SLSRSG+SSL++SWA+ V WHQGNLLSSD  K+ALD
Sbjct: 61  VLGGNGFVGSHVCKEALDRGLSVSSLSRSGKSSLQESWASRVTWHQGNLLSSDLLKDALD 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLL+GYY
Sbjct: 121 GVTSVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLRGYY 180

Query: 181 EGK 183
           EGK
Sbjct: 181 EGK 183

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255548648|ref|XP_002515380.1| conserved hypothetical protein [Ricinus communis] gi|223545324|gb|EEF46829.1| conserved hypothetical protein [Ricinus communis]

 Score =  301 bits (771), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 144/165 (87%), Positives = 156/165 (94%)

Query: 19  SAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALD 78
           SA+ AS NGRYLSTDSNKVDEP KVEEAETVNVPPP +EKLLVLGGNGFVGSH+C+EALD
Sbjct: 13  SAVAASRNGRYLSTDSNKVDEPFKVEEAETVNVPPPAAEKLLVLGGNGFVGSHVCKEALD 72

Query: 79  RGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYM 138
           RGL V SLSRSGRSS+RDSWAN V WHQG+LLS +SWKEAL+GV+AVISCVGGFGS+S+M
Sbjct: 73  RGLKVDSLSRSGRSSVRDSWANAVTWHQGDLLSPNSWKEALNGVSAVISCVGGFGSHSHM 132

Query: 139 YKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGK 183
           YKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLLQGYYEGK
Sbjct: 133 YKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLQGYYEGK 177

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507480|gb|AFK41806.1| unknown [Lotus japonicus]

 Score =  301 bits (770), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 145/183 (79%), Positives = 163/183 (89%), Gaps = 4/183 (2%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRT+VSRLI+S   +SRL+A       R L T+ NKVDEP KVEEAETVNVPPPP+EKLL
Sbjct: 1   MRTLVSRLIHSTPPISRLNATAV----RNLCTEPNKVDEPFKVEEAETVNVPPPPTEKLL 56

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSH+CREAL+ GL+VASLSRSG+SSL DSWA +VIW++GNL S+DS KEAL+
Sbjct: 57  VLGGNGFVGSHVCREALNHGLSVASLSRSGKSSLHDSWATDVIWYKGNLFSTDSLKEALN 116

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVTAVISCVGGFGSNSYMYKI+GTANINAIRAAS++GVKRFVYISAADFGV NYLLQGYY
Sbjct: 117 GVTAVISCVGGFGSNSYMYKIDGTANINAIRAASDQGVKRFVYISAADFGVVNYLLQGYY 176

Query: 181 EGK 183
           EGK
Sbjct: 177 EGK 179

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416362|ref|NP_568236.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana] gi|13926273|gb|AAK49607.1|AF372891_1 AT5g10730/MAJ23_90 [Arabidopsis thaliana] gi|16323238|gb|AAL15353.1| AT5g10730/MAJ23_90 [Arabidopsis thaliana] gi|19698949|gb|AAL91210.1| putative protein [Arabidopsis thaliana] gi|21387195|gb|AAM48001.1| unknown protein [Arabidopsis thaliana] gi|21536539|gb|AAM60871.1| unknown [Arabidopsis thaliana] gi|332004206|gb|AED91589.1| Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]

 Score =  291 bits (746), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 172/183 (93%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRTIVSRLI  +SS+S++  ++ASG GRYLSTDSNK+DEP  VEEAETV+VPPPP+EKLL
Sbjct: 1   MRTIVSRLIRYQSSLSQIRFVSASGGGRYLSTDSNKIDEPFNVEEAETVHVPPPPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSH+C+EALDRGL+V+SLSRSGRSSL++SWA+ V WHQGNLLSSD  K+AL+
Sbjct: 61  VLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSSLQESWASRVTWHQGNLLSSDLLKDALE 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVT+VISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLL+GYY
Sbjct: 121 GVTSVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLRGYY 180

Query: 181 EGK 183
           EGK
Sbjct: 181 EGK 183

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507149|ref|XP_003522333.1| PREDICTED: uncharacterized protein At1g32220, chloroplastic-like [Glycine max]

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 151/183 (82%), Positives = 166/183 (90%)

Query: 1   MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
           MRT++SRLI+S  S+SRL+A   S +GR L TDSNKVD P KVEEAETVNVPP P+EKLL
Sbjct: 1   MRTVISRLIHSTPSISRLNATVVSISGRNLCTDSNKVDGPFKVEEAETVNVPPLPTEKLL 60

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD 120
           VLGGNGFVGSHICREALDR L+VASLSRSGRSSL DSWA NV W++GNLLS+DS KEAL+
Sbjct: 61  VLGGNGFVGSHICREALDRDLSVASLSRSGRSSLHDSWATNVAWYKGNLLSTDSLKEALN 120

Query: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
           GVTAVISCVGGFGSNSYMYKINGTANINAIRAAS++GVKRFVYISAADFGV NYLL+GYY
Sbjct: 121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASDQGVKRFVYISAADFGVVNYLLRGYY 180

Query: 181 EGK 183
           EGK
Sbjct: 181 EGK 183

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
TAIR|locus:2159674	287	AT5G10730 [Arabidopsis thalian	0.905	0.637	0.765	5.9e-73
TAIR|locus:2146092	269	AT5G15910 [Arabidopsis thalian	0.826	0.620	0.513	1.9e-42
TAIR|locus:2031710	296	AT1G32220 [Arabidopsis thalian	0.628	0.429	0.410	1.4e-23
UNIPROTKB|K7GMD9	215	NSDHL "Uncharacterized protein	0.613	0.576	0.270	2.9e-06
UNIPROTKB|F1S2D0	361	NSDHL "Uncharacterized protein	0.613	0.343	0.270	1.2e-05
UNIPROTKB|F6XJP3	361	NSDHL "Uncharacterized protein	0.613	0.343	0.270	2.2e-05
ASPGD|ASPL0000045253	287	AN1860 [Emericella nidulans (t	0.371	0.261	0.325	4.5e-05
UNIPROTKB|E2QVH4	373	NSDHL "Uncharacterized protein	0.613	0.332	0.272	7.5e-05
SGD|S000004281	277	YLR290C "Putative protein of u	0.361	0.263	0.320	0.00014
UNIPROTKB|Q3ZBE9	356	NSDHL "Sterol-4-alpha-carboxyl	0.539	0.306	0.282	0.00017

TAIR|locus:2159674 AT5G10730 [Arabidopsis thaliana (taxid:3702)]

 Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
 Identities = 140/183 (76%), Positives = 159/183 (86%)

Query:     1 MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
             MRTIVSRLI  +SS+S++  ++ASG GRYLSTDSNK+DEP  VEEAETV+VPPPP+EKLL
Sbjct:     1 MRTIVSRLIRYQSSLSQIRFVSASGGGRYLSTDSNKIDEPFNVEEAETVHVPPPPTEKLL 60

Query:    61 VLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSWKEALD 120
             VLGGNGFVGSH+C+EALDRGL+V+             WA+ V WHQGNLLSSD  K+AL+
Sbjct:    61 VLGGNGFVGSHVCKEALDRGLSVSSLSRSGRSSLQESWASRVTWHQGNLLSSDLLKDALE 120

Query:   121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
             GVT+VISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG+ANYLL+GYY
Sbjct:   121 GVTSVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGLANYLLRGYY 180

Query:   181 EGK 183
             EGK
Sbjct:   181 EGK 183

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2146092 AT5G15910 [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 94/183 (51%), Positives = 126/183 (68%)

Query:     1 MRTIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLL 60
             +R+++ +   + SSV  +S+I+  GN R LS          +V  + +         K+L
Sbjct:     2 LRSLIWKRSQAYSSVVTMSSISQRGNERLLS----------EVAGSHS------RDNKIL 45

Query:    61 VLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSWKEALD 120
             VLGGNG+VGSHIC+EAL +G +V+             W ++V WHQG+LLS DS K AL+
Sbjct:    46 VLGGNGYVGSHICKEALRQGFSVSSLSRSGRSSLHDSWVDDVTWHQGDLLSPDSLKPALE 105

Query:   121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYY 180
             G+T+VISCVGGFGSNS M +INGTANINA++AA+E+GVKRFVYISAADFGV N L++GY+
Sbjct:   106 GITSVISCVGGFGSNSQMVRINGTANINAVKAAAEQGVKRFVYISAADFGVINNLIRGYF 165

Query:   181 EGK 183
             EGK
Sbjct:   166 EGK 168

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2031710 AT1G32220 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 53/129 (41%), Positives = 77/129 (59%)

Query:    56 SEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSDSW 115
             SE+++VLGGNGFVGS IC+ A+  G+ V              W + V W  G++   + W
Sbjct:    62 SERVVVLGGNGFVGSAICKAAISNGIEVVSVSRSGRPNFEDSWLDQVTWVTGDVFYLN-W 120

Query:   116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYL 175
              E L G TAV+S +GGFG+   M +ING AN+ A+ AA + GV +FV I+  D+ +  ++
Sbjct:   121 DEVLLGATAVVSTIGGFGNEEQMKRINGEANVTAVNAAKDFGVPKFVLITVHDYNLPPFI 180

Query:   176 LQ-GYYEGK 183
             L  GY+ GK
Sbjct:   181 LSNGYFTGK 189

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0044237 "cellular metabolic process" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0010287 "plastoglobule" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0042631 "cellular response to water deprivation" evidence=RCA

UNIPROTKB|K7GMD9 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 36/133 (27%), Positives = 58/133 (43%)

Query:    39 EPLKVEEAET-VNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX 97
             EP+K +  +T +    P   K  V+GG+GF+G H+  + L+RG  V              
Sbjct:     7 EPIKDQVTQTHLTEDIPKDRKCTVIGGSGFLGQHMVEQLLERGYAVNVFDKRQGFDNP-- 64

Query:    98 WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS---YMYKINGTANINAIRAAS 154
                 V +  G+L +      AL GV+ V  C     S++     Y++N     N I    
Sbjct:    65 ---RVQFFLGDLCNQQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETCR 121

Query:   155 EKGVKRFVYISAA 167
             E GV++ +  S+A
Sbjct:   122 EAGVQKLILTSSA 134

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1S2D0 NSDHL "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 122 (48.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 36/133 (27%), Positives = 58/133 (43%)

Query:    39 EPLKVEEAET-VNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX 97
             EP+K +  +T +    P   K  V+GG+GF+G H+  + L+RG  V              
Sbjct:     7 EPIKDQVTQTHLTEDIPKDRKCTVIGGSGFLGQHMVEQLLERGYAVNVFDKRQGFDNP-- 64

Query:    98 WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS---YMYKINGTANINAIRAAS 154
                 V +  G+L +      AL GV+ V  C     S++     Y++N     N I    
Sbjct:    65 ---RVQFFLGDLCNQQDLYPALKGVSTVFHCASPAPSSNNKELFYRVNYIGTKNVIETCR 121

Query:   155 EKGVKRFVYISAA 167
             E GV++ +  S+A
Sbjct:   122 EAGVQKLILTSSA 134

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F6XJP3 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 120 (47.3 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 36/133 (27%), Positives = 56/133 (42%)

Query:    39 EPLKVEEAET-VNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX 97
             EP++ +   T +    P + K  V+GG+GF+G H+  + L RG TV              
Sbjct:     7 EPMRDQVTRTHLTEGLPNASKCTVIGGSGFLGQHMVEQLLARGYTVNVFDMRQGFDNP-- 64

Query:    98 WANNVIWHQGNLLSSDSWKEALDGVTAVISCVG---GFGSNSYMYKINGTANINAIRAAS 154
                 V +  G+L S      AL GV+ V  C        +    Y++N     N I    
Sbjct:    65 ---RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCK 121

Query:   155 EKGVKRFVYISAA 167
             E GV++ +  S+A
Sbjct:   122 EAGVQKLILTSSA 134

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000045253 AN1860 [Emericella nidulans (taxid:162425)]

 Score = 116 (45.9 bits), Expect = 4.5e-05, P = 4.5e-05
 Identities = 27/83 (32%), Positives = 42/83 (50%)

Query:    56 SEKLLVLGGNGFVGSHICREALDRGLTVAXXXXX--------XXXXXXXXWANNVIWHQG 107
             S+KL+V GGNGF+GS IC+ A+ RG +V                      WA +V W + 
Sbjct:     3 SKKLVVAGGNGFLGSRICKSAVARGWSVTSISRSGEPRWDVVTSSPQRPGWAKSVEWAKA 62

Query:   108 NLLSSDSWKEALDGVTAVISCVG 130
             ++L  +++K  L    AV+  +G
Sbjct:    63 DILKPNTYKPFLKDANAVVHSMG 85

GO:0008150 "biological_process" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2QVH4 NSDHL "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 36/132 (27%), Positives = 53/132 (40%)

Query:    39 EPLKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXW 98
             E L     +T  V    + K  V+GG+GF+G H+  + L RG TV               
Sbjct:    20 EGLPNVSTDTKKVNQNQASKCTVIGGSGFLGQHMVEQLLARGYTVNVFDMRQGFDNP--- 76

Query:    99 ANNVIWHQGNLLSSDSWKEALDGVTAVISCVG---GFGSNSYMYKINGTANINAIRAASE 155
                V +  G+L S      AL GV+ V  C        +    Y++N     N I    E
Sbjct:    77 --RVQFFLGDLCSQQDLYPALKGVSTVFHCASPPPSSNNKELFYRVNYIGTKNVIETCKE 134

Query:   156 KGVKRFVYISAA 167
              GV++ +  S+A
Sbjct:   135 AGVQKLILTSSA 146

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000004281 YLR290C "Putative protein of unknown function" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 112 (44.5 bits), Expect = 0.00014, P = 0.00014
 Identities = 25/78 (32%), Positives = 35/78 (44%)

Query:    58 KLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXX-----WANNVIWHQGNLLSS 112
             KL+V GGNGF+G  IC+EA+  G  V                   W   V W   ++   
Sbjct:     4 KLIVFGGNGFLGKRICQEAVTSGYQVVSVSRSGKAPHSNELNDKQWMQEVQWTAADIFKP 63

Query:   113 DSWKEALDGVTAVISCVG 130
             DS+ E L+  T V+  +G
Sbjct:    64 DSYHELLNNATNVVHSLG 81

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q3ZBE9 NSDHL "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating" [Bos taurus (taxid:9913)]

 Score = 113 (44.8 bits), Expect = 0.00017, P = 0.00017
 Identities = 33/117 (28%), Positives = 51/117 (43%)

Query:    54 PPSEKLLVLGGNGFVGSHICREALDRGLTVAXXXXXXXXXXXXXWANNVIWHQGNLLSSD 113
             P +++  V+GG GF+G H+  + L RG  V                  V +  G+L S  
Sbjct:    18 PKAKRCTVIGGCGFLGQHMVEQLLARGYAVNVFDIRQGFDNP-----RVQFFLGDLCSQQ 72

Query:   114 SWKEALDGVTAVISCVGG--FGSNSYM-YKINGTANINAIRAASEKGVKRFVYISAA 167
                 AL GV+ V  C     F +N  + Y++N     N I    E GV++ +  S+A
Sbjct:    73 DLYPALKGVSTVFHCASPPPFNNNKELFYRVNYIGTKNVIETCKEAGVQKLILTSSA 129

GO:0060716 "labyrinthine layer blood vessel development" evidence=IEA

GO:0007224 "smoothened signaling pathway" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0047012 "sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0003854 "3-beta-hydroxy-delta5-steroid dehydrogenase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_VI001941 hypothetical protein (288 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	202
cd05243	203	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	1e-21
cd05244	207	cd05244, BVR-B_like_SDR_a, biliverdin IX beta redu	5e-17
cd05228	318	cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr	5e-17
COG0702	275	COG0702, COG0702, Predicted nucleoside-diphosphate	7e-17
pfam01370	233	pfam01370, Epimerase, NAD dependent epimerase/dehy	1e-16
cd05271	273	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ub	1e-16
pfam13460	182	pfam13460, NAD_binding_10, NADH(P)-binding	4e-16
COG0451	314	COG0451, WcaG, Nucleoside-diphosphate-sugar epimer	4e-15
cd05245	293	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2	2e-14
cd05259	282	cd05259, PCBER_SDR_a, phenylcoumaran benzylic ethe	3e-14
pfam01073	280	pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydr	8e-14
TIGR03466	328	TIGR03466, HpnA, hopanoid-associated sugar epimera	1e-12
cd05227	301	cd05227, AR_SDR_e, aldehyde reductase, extended (e	1e-12
cd05241	331	cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid d	3e-11
cd05226	176	cd05226, SDR_e_a, Extended (e) and atypical (a) SD	5e-11
cd05232	303	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase,	2e-10
cd05256	304	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e	3e-10
cd08946	200	cd08946, SDR_e, extended (e) SDRs	4e-10
CHL00194	317	CHL00194, ycf39, Ycf39; Provisional	8e-10
pfam05368	232	pfam05368, NmrA, NmrA-like family	9e-10
cd05264	300	cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase	2e-09
cd09813	335	cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD	2e-09
cd05250	214	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical	2e-09
cd05269	272	cd05269, TMR_SDR_a, triphenylmethane reductase (TM	3e-09
PLN02657	390	PLN02657, PLN02657, 3,8-divinyl protochlorophyllid	4e-09
COG1087	329	COG1087, GalE, UDP-glucose 4-epimerase [Cell envel	6e-09
cd05273	328	cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-	2e-08
cd05247	323	cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase,	2e-08
COG2910	211	COG2910, COG2910, Putative NADH-flavin reductase [	2e-08
cd05263	293	cd05263, MupV_like_SDR_e, Pseudomonas fluorescens	5e-08
cd05193	295	cd05193, AR_like_SDR_e, aldehyde reductase, flavon	6e-08
pfam07993	245	pfam07993, NAD_binding_4, Male sterility protein	2e-07
cd05262	291	cd05262, SDR_a7, atypical (a) SDRs, subgroup 7	2e-07
cd05251	242	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional	2e-07
cd05257	316	cd05257, Arna_like_SDR_e, Arna decarboxylase_like,	2e-07
TIGR01179	328	TIGR01179, galE, UDP-glucose-4-epimerase GalE	9e-07
cd05229	302	cd05229, SDR_a3, atypical (a) SDRs, subgroup 3	3e-06
cd09811	354	cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD	7e-06
cd05254	280	cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4	3e-05
cd08958	293	cd08958, FR_SDR_e, flavonoid reductase (FR), exten	3e-05
PLN02695	370	PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase	3e-05
cd05265	250	cd05265, SDR_a1, atypical (a) SDRs, subgroup 1	4e-05
cd05242	296	cd05242, SDR_a8, atypical (a) SDRs, subgroup 8	6e-05
PRK09009	235	PRK09009, PRK09009, C factor cell-cell signaling p	2e-04
COG1091	281	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [C	3e-04
TIGR03649	285	TIGR03649, ergot_EASG, ergot alkaloid biosynthesis	4e-04
cd05231	259	cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcript	7e-04
cd05267	203	cd05267, SDR_a6, atypical (a) SDRs, subgroup 6	0.001
cd05239	300	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, exte	0.001
cd05246	315	cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra	0.001
TIGR01777	291	TIGR01777, yfcH, TIGR01777 family protein	0.001
COG1748	389	COG1748, LYS9, Saccharopine dehydrogenase and rela	0.002
PLN02240	352	PLN02240, PLN02240, UDP-glucose 4-epimerase	0.003
cd05234	305	cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase,	0.003
TIGR04180	297	TIGR04180, EDH_00030, NAD dependent epimerase/dehy	0.003
COG3320	382	COG3320, COG3320, Putative dehydrogenase domain of	0.004

>gnl|CDD|187554 cd05243, SDR_a5, atypical (a) SDRs, subgroup 5

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 44/110 (40%), Positives = 58/110 (52%), Gaps = 2/110 (1%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+LV+G  G VG H+ RE LDRG  V +L R   S      A       G+L  ++S   
Sbjct: 1   KVLVVGATGKVGRHVVRELLDRGYQVRALVRD-PSQAEKLEAAGAEVVVGDLTDAESLAA 59

Query: 118 ALDGVTAVISCVGGFGSNSYMY-KINGTANINAIRAASEKGVKRFVYISA 166
           AL+G+ AVIS  G  G        ++   NIN I AA + GVKRFV +S+
Sbjct: 60  ALEGIDAVISAAGSGGKGGPRTEAVDYDGNINLIDAAKKAGVKRFVLVSS 109

This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|187555 cd05244, BVR-B_like_SDR_a, biliverdin IX beta reductase (BVR-B, aka flavin reductase)-like proteins; atypical (a) SDRs

 Score = 75.4 bits (186), Expect = 5e-17
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 7/112 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ ++G  G  GS I REAL RG  V +L R       +     V+  QG++L  +  KE
Sbjct: 1   KIAIIGATGRTGSAIVREALARGHEVTALVRDPAKLPAEHEKLKVV--QGDVLDLEDVKE 58

Query: 118 ALDGVTAVISCVGGFGSNS--YMYKINGTANINAIRAASEKGVKRFVYISAA 167
           AL+G  AVIS +G     S   ++   GT NI  + A    GVKR + +  A
Sbjct: 59  ALEGQDAVISALGTRNDLSPTTLH-SEGTRNI--VSAMKAAGVKRLIVVGGA 107

Human BVR-B catalyzes pyridine nucleotide-dependent production of bilirubin-IX beta during fetal development; in the adult BVR-B has flavin and ferric reductase activities. Human BVR-B catalyzes the reduction of FMN, FAD, and riboflavin. Recognition of flavin occurs mostly by hydrophobic interactions, accounting for the broad substrate specificity. Atypical SDRs are distinct from classical SDRs. BVR-B does not share the key catalytic triad, or conserved tyrosine typical of SDRs. The glycine-rich NADP-binding motif of BVR-B is GXXGXXG, which is similar but not identical to the pattern seen in extended SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 207

>gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 9/112 (8%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G  GF+GS++ R  L +G  V +L RSG S         V   +G+L  + S   A+
Sbjct: 2   LVTGATGFLGSNLVRALLAQGYRVRALVRSG-SDAVLLDGLPVEVVEGDLTDAASLAAAM 60

Query: 120 DGVTAVISCVGGF----GSNSYMYKIN--GTANINAIRAASEKGVKRFVYIS 165
            G   V                +Y+ N  GT N+  + AA E GV+R V+ S
Sbjct: 61  KGCDRVFHLAAFTSLWAKDRKELYRTNVEGTRNV--LDAALEAGVRRVVHTS 110

This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318

>gnl|CDD|223774 COG0702, COG0702, Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 76.1 bits (187), Expect = 7e-17
 Identities = 34/111 (30%), Positives = 47/111 (42%), Gaps = 3/111 (2%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+LV G  GFVG  + RE L RG  V +  R+  ++   + A  V    G+L    S   
Sbjct: 2   KILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAA--AALAGGVEVVLGDLRDPKSLVA 59

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
              GV  V+   G    +     +  TA + A  AA   GVK  V +S   
Sbjct: 60  GAKGVDGVLLISGLLDGSDAFRAVQVTAVVRAAEAAGA-GVKHGVSLSVLG 109

Length = 275

>gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 37/116 (31%), Positives = 53/116 (45%), Gaps = 10/116 (8%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV GG GF+GSH+ R  L  G  V  L R  RS   ++      +H+G+L   D+ +  L
Sbjct: 2   LVTGGTGFIGSHLVRRLLQEGYEVIVLGRRRRSESLNTGRIR--FHEGDLTDPDALERLL 59

Query: 120 DGV--TAVISCVGG------FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
             V   AVI           F   +   + N    +  + AA   GVKRFV+ S++
Sbjct: 60  AEVQPDAVIHLAAQSGVGASFEDPADFIRANVLGTLRLLEAARRAGVKRFVFASSS 115

This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233

>gnl|CDD|187579 cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 9/117 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANN---VIWHQGNLLSSDS 114
            + V G  GF+G ++      RG  V    R    + R     +   V++ + +L   +S
Sbjct: 2   VVTVFGATGFIGRYVVNRLAKRGSQVIVPYRCEAYARRLLVMGDLGQVLFVEFDLRDDES 61

Query: 115 WKEALDGVTAVISCVG---GFGSNSYMY-KINGTANINAIRAASEKGVKRFVYISAA 167
            ++AL+G   VI+ VG      + S+    + G   +   +AA E GV+R ++ISA 
Sbjct: 62  IRKALEGSDVVINLVGRLYETKNFSFEDVHVEGPERL--AKAAKEAGVERLIHISAL 116

This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 273

>gnl|CDD|222146 pfam13460, NAD_binding_10, NADH(P)-binding

 Score = 72.3 bits (178), Expect = 4e-16
 Identities = 34/109 (31%), Positives = 48/109 (44%), Gaps = 11/109 (10%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA 118
           + V+G  G  G  + +E L RG  V +LSR+  S         V   Q +L       EA
Sbjct: 1   IAVIGATGKTGRRLVKELLARGHQVTALSRNP-SKAPAPGVTPV---QKDLFDLADLAEA 56

Query: 119 LDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           L GV AV+   G    +S           + + AA+  GV+R V +SAA
Sbjct: 57  LAGVDAVVDAFGARPDDS-------DGVKHLLDAAARAGVRRIVVVSAA 98

Length = 182

>gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

 Score = 71.5 bits (175), Expect = 4e-15
 Identities = 33/118 (27%), Positives = 48/118 (40%), Gaps = 10/118 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++LV GG GF+GSH+    L  G  V  L R           + V +   +L   D   E
Sbjct: 2   RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL--LSGVEFVVLDLTDRDLVDE 59

Query: 118 ALDGVTAVI----SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISAA 167
              GV   +    +      SN    +    +N    +N + AA   GVKRFV+ S+ 
Sbjct: 60  LAKGVPDAVIHLAAQSSVPDSNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSV 117

Length = 314

>gnl|CDD|187556 cd05245, SDR_a2, atypical (a) SDRs, subgroup 2

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 33/106 (31%), Positives = 47/106 (44%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G  G+VG  +    L  G  V +L RS        W+  V   +G+L   +S + AL
Sbjct: 2   LVTGATGYVGGRLVPRLLQEGHQVRALVRSPEKLADRPWSERVTVVRGDLEDPESLRAAL 61

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
           +G+      V   GS     + +  A  N  RAA   GVKR +Y+ 
Sbjct: 62  EGIDTAYYLVHSMGSGGDFEEADRRAARNFARAARAAGVKRIIYLG 107

This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187569 cd05259, PCBER_SDR_a, phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs

 Score = 68.9 bits (169), Expect = 3e-14
 Identities = 36/115 (31%), Positives = 50/115 (43%), Gaps = 13/115 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           K+ + G  G +G  I    L   G TV  L+R   +S  +   + V     +  S +S  
Sbjct: 1   KIAIAGATGTLGGPIVSALLASPGFTVTVLTRPSSTSSNEFQPSGVKVVPVDYASHESLV 60

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV 171
            AL GV AVIS +GG               +  I AA   GVKRF+    ++FGV
Sbjct: 61  AALKGVDAVISALGGAAIGD---------QLKLIDAAIAAGVKRFI---PSEFGV 103

PCBER and pinoresinol-lariciresinol reductases are NADPH-dependent aromatic alcohol reductases, and are atypical members of the SDR family. Other proteins in this subgroup are identified as eugenol synthase. These proteins contain an N-terminus characteristic of NAD(P)-binding proteins and a small C-terminal domain presumed to be involved in substrate binding, but they do not have the conserved active site Tyr residue typically found in SDRs. Numerous other members have unknown functions. The glycine rich NADP-binding motif in this subgroup is of 2 forms: GXGXXG and G[GA]XGXXG; it tends to be atypical compared with the forms generally seen in classical or extended SDRs. The usual SDR active site tetrad is not present, but a critical active site Lys at the usual SDR position has been identified in various members, though other charged and polar residues are found at this position in this subgroup. Atypical SDR-related proteins retain the Rossmann fold of the SDRs, but have limited sequence identity and generally lack the catalytic properties of the archetypical members. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 282

>gnl|CDD|216283 pfam01073, 3Beta_HSD, 3-beta hydroxysteroid dehydrogenase/isomerase family

 Score = 67.7 bits (166), Expect = 8e-14
 Identities = 34/118 (28%), Positives = 50/118 (42%), Gaps = 9/118 (7%)

Query: 60  LVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWAN-NVI-WHQGNLLSSDSW 115
           LV GG GF+G HI R  L  G    V          L + ++   VI + +G++      
Sbjct: 1   LVTGGGGFLGRHIVRLLLREGELQEVRVFDLRFSPELLEDFSKLQVITYIEGDVTDKQDL 60

Query: 116 KEALDGV-----TAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           + AL G      TA I  V G      + K+N     N + A  + GV+  VY S+ +
Sbjct: 61  RRALQGSDVVIHTAAIIDVFGKAYRDTIMKVNVKGTQNVLDACVKAGVRVLVYTSSME 118

The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyzes the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. Length = 280

>gnl|CDD|163279 TIGR03466, HpnA, hopanoid-associated sugar epimerase

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 9/114 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+LV G  GFVGS + R  L++G  V  L R   S  R+    +V   +G+L    S ++
Sbjct: 2   KVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPT-SDRRNLEGLDVEIVEGDLRDPASLRK 60

Query: 118 ALDGVTAVISCVGGF----GSNSYMYKIN--GTANINAIRAASEKGVKRFVYIS 165
           A+ G  A+      +         MY  N  GT N+  +RAA E GV+R VY S
Sbjct: 61  AVAGCRALFHVAADYRLWAPDPEEMYAANVEGTRNL--LRAALEAGVERVVYTS 112

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnA was assigned. Hopanoids are known to be components of the plasma membrane and to have polar sugar head groups in Z. mobilis and other species. Length = 328

>gnl|CDD|187538 cd05227, AR_SDR_e, aldehyde reductase, extended (e) SDRs

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 41/128 (32%), Positives = 59/128 (46%), Gaps = 22/128 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----LTVASLSRSG--RSSLRDSWANN----VIWHQG 107
            +LV G  GF+ SHI  + L  G     TV SLS+S   ++ L+ +  N+    VI    
Sbjct: 1   LVLVTGATGFIASHIVEQLLKAGYKVRGTVRSLSKSAKLKALLKAAGYNDRLEFVI--VD 58

Query: 108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYK-------INGTANI-NAIRAASEKGVK 159
           +L + ++W EAL GV  VI     F       +       + GT N+  A +AA    VK
Sbjct: 59  DLTAPNAWDEALKGVDYVIHVASPFPFTGPDAEDDVIDPAVEGTLNVLEAAKAA--GSVK 116

Query: 160 RFVYISAA 167
           R V  S+ 
Sbjct: 117 RVVLTSSV 124

This subgroup contains aldehyde reductase of the extended SDR-type and related proteins. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 301

>gnl|CDD|187552 cd05241, 3b-HSD-like_SDR_e, 3beta-hydroxysteroid dehydrogenases (3b-HSD)-like, extended (e) SDRs

 Score = 60.9 bits (148), Expect = 3e-11
 Identities = 31/113 (27%), Positives = 54/113 (47%), Gaps = 5/113 (4%)

Query: 60  LVLGGNGFVGSHICREALDRGLT-VASLSRS-GRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           LV GG+GF G  + ++ L+RG T V S   +    +L      N+ + +G++   +  ++
Sbjct: 3   LVTGGSGFFGERLVKQLLERGGTYVRSFDIAPPGEALSAWQHPNIEFLKGDITDRNDVEQ 62

Query: 118 ALDGVTAVISC---VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           AL G   V      V   G     +++N     N + A    GV++FVY S++
Sbjct: 63  ALSGADCVFHTAAIVPLAGPRDLYWEVNVGGTQNVLDACQRCGVQKFVYTSSS 115

Extended SDR family domains belonging to this subgroup have the characteristic active site tetrad and a fairly well-conserved NAD(P)-binding motif. 3b-HSD catalyzes the NAD-dependent conversion of various steroids, such as pregnenolone to progesterone, or androstenediol to testosterone. This subgroup includes an unusual bifunctional 3b-HSD/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. It also includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7]. C(27) 3beta-HSD/HSD3B7 is a membrane-bound enzyme of the endoplasmic reticulum, that catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human NSDHL (NAD(P)H steroid dehydrogenase-like protein) cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 331

>gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs

 Score = 58.6 bits (142), Expect = 5e-11
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 1/108 (0%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           L+LG  GF+G  + RE L++G  V  L R+ +   ++      +  +G+L   DS  +A+
Sbjct: 2   LILGATGFIGRALARELLEQGHEVTLLVRNTKRLSKEDQEPVAV-VEGDLRDLDSLSDAV 60

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            GV  VI   G         +++     N + AA E GVK F++IS+ 
Sbjct: 61  QGVDVVIHLAGAPRDTRDFCEVDVEGTRNVLEAAKEAGVKHFIFISSL 108

Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176

>gnl|CDD|187543 cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 17/117 (14%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+LV G NGF+G  +  + L RG  V    R+      ++   +V+  +  L   DS+ +
Sbjct: 1   KVLVTGANGFIGRALVDKLLSRGEEVRIAVRN-----AENAEPSVVLAE--LPDIDSFTD 53

Query: 118 ALDGVTAVISCVGGFGSNS---------YMYKINGTANINAIRAASEKGVKRFVYIS 165
              GV AV+         +         Y  K+N        RAA+ +GVKRFV++S
Sbjct: 54  LFLGVDAVVHLAARVHVMNDQGADPLSDYR-KVNTELTRRLARAAARQGVKRFVFLS 109

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of bacterial proteins, and includes the Staphylococcus aureus capsular polysaccharide Cap5N, which may have a role in the synthesis of UDP-N-acetyl-d-fucosamine. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 303

>gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 12/120 (10%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++LV GG GF+GSH+    L+RG  V    +LS +G+         NV + +G++   + 
Sbjct: 1   RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLS-TGKKENLPEVKPNVKFIEGDIRDDEL 59

Query: 115 WKEALDGVTAVISCVGGFGSNS-------YMYKINGTANINAIRAASEKGVKRFVYISAA 167
            + A +GV  V        S           +++N    +N + AA + GVKRFVY S++
Sbjct: 60  VEFAFEGVDYVFH-QAAQASVPRSIEDPIKDHEVNVLGTLNLLEAARKAGVKRFVYASSS 118

This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304

>gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 29/107 (27%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEA 118
           LV GG GF+GSH+ R  L+RG  V  + R            +V+ H   L+    SW   
Sbjct: 2   LVTGGAGFIGSHLVRRLLERGHEVVVIDRL-----------DVVVHLAALVGVPASWDNP 50

Query: 119 LDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            +                  ++ N    +N + AA + GVKRFVY S
Sbjct: 51  DE-----------------DFETNVVGTLNLLEAARKAGVKRFVYAS 80

Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200

>gnl|CDD|177093 CHL00194, ycf39, Ycf39; Provisional

 Score = 56.9 bits (138), Expect = 8e-10
 Identities = 35/111 (31%), Positives = 57/111 (51%), Gaps = 6/111 (5%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSWK 116
           LLV+G  G +G  I R+ALD G  V  L R+ R +  L++ W   +++  G+L   ++  
Sbjct: 3   LLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-WGAELVY--GDLSLPETLP 59

Query: 117 EALDGVTAVISCVGGFGSNSY-MYKINGTANINAIRAASEKGVKRFVYISA 166
            +  GVTA+I       S+ Y   +I+    +  I AA    +KRF++ S 
Sbjct: 60  PSFKGVTAIIDASTSRPSDLYNAKQIDWDGKLALIEAAKAAKIKRFIFFSI 110

Length = 317

>gnl|CDD|191263 pfam05368, NmrA, NmrA-like family

 Score = 56.1 bits (136), Expect = 9e-10
 Identities = 37/128 (28%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANN-VIWHQGNLLSSDSWKE 117
           +LV G  G+ G  + R +L  G  V +L R  +S L  S     V   +G+L   +S  E
Sbjct: 1   ILVFGATGYQGGSVVRASLKAGHPVRALVRDPKSELAKSLKAAGVELVEGDLDDHESLVE 60

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQ 177
           AL GV  V S  G + S                 AA E GVK F+    ++FG       
Sbjct: 61  ALKGVDVVFSVTGFWLSKEIEDG------KKLADAAKEAGVKHFIP---SEFGNDVDRSN 111

Query: 178 GYYEGKVL 185
           G       
Sbjct: 112 GVEPAVPH 119

NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families. Length = 232

>gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 26/114 (22%), Positives = 48/114 (42%), Gaps = 8/114 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++L++GGNGF+GSH+    L+ G  V    RS            V + +G+  +    + 
Sbjct: 1   RVLIVGGNGFIGSHLVDALLEEGPQVRVFDRSIPPYELPLGG--VDYIKGDYENRADLES 58

Query: 118 ALDGVTAVI-----SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYIS 165
           AL G+  VI     +       N     + N    +  + A +  G+ + ++ S
Sbjct: 59  ALVGIDTVIHLASTTNPATSNKNPILDIQTNVAPTVQLLEACAAAGIGKIIFAS 112

This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187673 cd09813, 3b-HSD-NSDHL-like_SDR_e, human NSDHL (NAD(P)H steroid dehydrogenase-like protein)-like, extended (e) SDRs

 Score = 55.8 bits (135), Expect = 2e-09
 Identities = 39/117 (33%), Positives = 56/117 (47%), Gaps = 11/117 (9%)

Query: 60  LVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA 118
           LV+GG+GF+G H+  + L RG  TV          L  S +  V +H G+L      ++A
Sbjct: 3   LVVGGSGFLGRHLVEQLLRRGNPTVHVFDIRPTFELDPSSSGRVQFHTGDLTDPQDLEKA 62

Query: 119 LD--GVTAVISC---VGGFGSNSYMYKIN--GTANINAIRAASEKGVKRFVYISAAD 168
            +  G   V        G   + Y YK+N  GT N+  I A  + GVK+ VY S+A 
Sbjct: 63  FNEKGPNVVFHTASPDHGSNDDLY-YKVNVQGTRNV--IEACRKCGVKKLVYTSSAS 116

This subgroup includes human NSDHL and related proteins. These proteins have the characteristic active site tetrad of extended SDRs, and also have a close match to their NAD(P)-binding motif. Human NSDHL is a 3beta-hydroxysteroid dehydrogenase (3 beta-HSD) which functions in the cholesterol biosynthetic pathway. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. Mutations in the gene encoding NSDHL cause CHILD syndrome (congenital hemidysplasia with ichthyosiform nevus and limb defects), an X-linked dominant, male-lethal trait. This subgroup also includes an unusual bifunctional [3beta-hydroxysteroid dehydrogenase (3b-HSD)/C-4 decarboxylase from Arabidopsis thaliana, and Saccharomyces cerevisiae ERG26, a 3b-HSD/C-4 decarboxylase, involved in the synthesis of ergosterol, the major sterol of yeast. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 335

>gnl|CDD|187560 cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 27/114 (23%), Positives = 43/114 (37%), Gaps = 8/114 (7%)

Query: 60  LVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           LVLG  G VG H+ RE L       V ++ R  R          ++    +    D + E
Sbjct: 4   LVLGATGLVGKHLLRELLKSPYYSKVTAIVR--RKLTFPEAKEKLVQIVVDFERLDEYLE 61

Query: 118 ALDGVTAVISCVG----GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           A         C+G      GS     K++    +   + A   GV+ F+ +S+ 
Sbjct: 62  AFQNPDVGFCCLGTTRKKAGSQENFRKVDHDYVLKLAKLAKAAGVQHFLLVSSL 115

Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 214

>gnl|CDD|187578 cd05269, TMR_SDR_a, triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs

 Score = 55.0 bits (133), Expect = 3e-09
 Identities = 29/109 (26%), Positives = 50/109 (45%), Gaps = 7/109 (6%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G  G +G+ +    L +  +V +L R+   +     A+ V   QG+    ++ + A 
Sbjct: 2   LVTGATGKLGTAVVELLLAKVASVVALVRNPEKAK-AFAADGVEVRQGDYDDPETLERAF 60

Query: 120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           +GV  ++       S S +       + N I AA + GVK  VY+SA+ 
Sbjct: 61  EGVDRLL-----LISPSDLED-RIQQHKNFIDAAKQAGVKHIVYLSASG 103

TMR is an atypical NADP-binding protein of the SDR family. It lacks the active site residues of the SDRs but has a glycine rich NAD(P)-binding motif that matches the extended SDRs. Proteins in this subgroup however, are more similar in length to the classical SDRs. TMR was identified as a reducer of triphenylmethane dyes, important environmental pollutants. This subgroup also includes Escherichia coli NADPH-dependent quinine oxidoreductase (QOR2), which catalyzes two-electron reduction of quinone; but is unlikely to play a major role in protecting against quinone cytotoxicity. Atypical SDRs are distinct from classical SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 272

>gnl|CDD|178263 PLN02657, PLN02657, 3,8-divinyl protochlorophyllide a 8-vinyl reductase

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 46/190 (24%), Positives = 85/190 (44%), Gaps = 21/190 (11%)

Query: 3   TIVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLKVEEAETVNVPPPPSEKLLVL 62
           ++ +    S S  +RL+A +  G     +  +++         A++     P    +LV+
Sbjct: 8   SLRAAAAASSSPSNRLAA-SLGGALVRRAAAASRGSRATAAAAAQSFRSKEPKDVTVLVV 66

Query: 63  GGNGFVGSHICREALDRGLTVASLSR--------SGRSSLRDSWANNVIWHQGNLLSSDS 114
           G  G++G  + RE + RG  V +++R        +G+   +       +   G++  +DS
Sbjct: 67  GATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVV-FGDVTDADS 125

Query: 115 WKEAL----DGVTAVISCV---GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            ++ L    D V  V+SC+    G   +S  +KI+  A  N++ A  E G K FV +SA 
Sbjct: 126 LRKVLFSEGDPVDVVVSCLASRTGGVKDS--WKIDYQATKNSLDAGREVGAKHFVLLSA- 182

Query: 168 DFGVANYLLQ 177
              V   LL+
Sbjct: 183 -ICVQKPLLE 191

Length = 390

>gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

 Score = 54.1 bits (131), Expect = 6e-09
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+LV GG G++GSH  R+ L  G  V    +LS   + +L         +++G+LL    
Sbjct: 2   KVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALL---KLQFKFYEGDLLDRAL 58

Query: 115 WKEALD--GVTAVISC-----VGGFGSNSYMYKINGTAN-INAIRAASEKGVKRFVYIS- 165
                +   + AV+       VG    N   Y  N     +N I A  + GVK+F++ S 
Sbjct: 59  LTAVFEENKIDAVVHFAASISVGESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSST 118

Query: 166 AADFGVA 172
           AA +G  
Sbjct: 119 AAVYGEP 125

Length = 329

>gnl|CDD|187581 cd05273, GME-like_SDR_e, Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME)-like, extended (e) SDRs

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 31/119 (26%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 57  EKLLVLGGNGFVGSHICREALDRGLTV-ASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           ++ LV G  GF+GSH+       G  V  +  +S     + +  +    H  +L   ++ 
Sbjct: 1   QRALVTGAGGFIGSHLAERLKAEGHYVRGADWKSPEHMTQPTDDDEF--HLVDLREMENC 58

Query: 116 KEALDGVTAVISC---VGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            +A +GV  V      +GG G    +++ +   N   N N + AA   GV+RF++ S+A
Sbjct: 59  LKATEGVDHVFHLAADMGGMGYIQSNHAVIMYNNTLINFNMLEAARINGVERFLFASSA 117

This subgroup of NDP-sugar epimerase/dehydratases are extended SDRs; they have the characteristic active site tetrad, and an NAD-binding motif: TGXXGXX[AG], which is a close match to the canonical NAD-binding motif. Members include Arabidopsis thaliana GDP-mannose-3',5'-epimerase (GME) which catalyzes the epimerization of two positions of GDP-alpha-D-mannose to form GDP-beta-L-galactose. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 328

>gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 22/135 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+LV GG G++GSH   E L+ G  V    +LS   R +L       + +++G++     
Sbjct: 1   KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGHREALPRIEKIRIEFYEGDIRD--- 57

Query: 115 WKEALDGV------TAVI-----SCVGGFGSN--SYMYKINGTANINAIRAASEKGVKRF 161
            + ALD V       AVI       VG        Y Y  N    +N + A    GVK F
Sbjct: 58  -RAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKY-YDNNVVGTLNLLEAMRAHGVKNF 115

Query: 162 VYIS-AADFGVANYL 175
           V+ S AA +G    +
Sbjct: 116 VFSSSAAVYGEPETV 130

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323

>gnl|CDD|225462 COG2910, COG2910, Putative NADH-flavin reductase [General function prediction only]

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 34/112 (30%), Positives = 53/112 (47%), Gaps = 9/112 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRS-GRSSLRDSWANNVIWHQGNLLSSDSWK 116
           K+ ++G +G  GS I +EAL RG  V ++ R+  + + R      V   Q ++    S  
Sbjct: 2   KIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQ----GVTILQKDIFDLTSLA 57

Query: 117 EALDGVTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
             L G  AVIS  G G   N  ++  +  A I A++ A   GV R + +  A
Sbjct: 58  SDLAGHDAVISAFGAGASDNDELHSKSIEALIEALKGA---GVPRLLVVGGA 106

Length = 211

>gnl|CDD|187573 cd05263, MupV_like_SDR_e, Pseudomonas fluorescens MupV-like, extended (e) SDRs

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 16/125 (12%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNL-- 109
           + V GG GF+G H+ +  L+ G  V  L RS                A+ V   +G+L  
Sbjct: 1   VFVTGGTGFLGRHLVKRLLENGFKVLVLVRSESLGEAHERIEEAGLEADRVRVLEGDLTQ 60

Query: 110 ----LSSDSWKEALDGVTAVISCVGGF---GSNSYMYKINGTANINAIRAASEKGVKRFV 162
               LS+ + +E    V  VI C   +     N   ++ N     + +  A+   ++RF 
Sbjct: 61  PNLGLSAAASRELAGKVDHVIHCAASYDFQAPNEDAWRTNIDGTEHVLELAARLDIQRFH 120

Query: 163 YISAA 167
           Y+S A
Sbjct: 121 YVSTA 125

This subgroup of extended SDR family domains have the characteristic active site tetrad and a well-conserved NAD(P)-binding motif. This subgroup is not well characterized, its members are annotated as having a variety of putative functions. One characterized member is Pseudomonas fluorescens MupV a protein involved in the biosynthesis of Mupirocin, a polyketide-derived antibiotic. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|187536 cd05193, AR_like_SDR_e, aldehyde reductase, flavonoid reductase, and related proteins, extended (e) SDRs

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 34/121 (28%), Positives = 52/121 (42%), Gaps = 14/121 (11%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRS--------SLRDSWANNVIWHQGNLLS 111
           LV G +GFV SH+  + L+RG  V +  R             L        +    +L  
Sbjct: 2   LVTGASGFVASHVVEQLLERGYKVRATVRDPSKVKKVNHLLDLDAKPGRLELA-VADLTD 60

Query: 112 SDSWKEALDGVTAV--ISCVGGFGSN--SYMYKINGTANINAIRAASE-KGVKRFVYISA 166
             S+ E + G   V  ++    F S   + + K      +NA++AA+  K VKRFV  S+
Sbjct: 61  EQSFDEVIKGCAGVFHVATPVSFSSKDPNEVIKPAIGGTLNALKAAAAAKSVKRFVLTSS 120

Query: 167 A 167
           A
Sbjct: 121 A 121

This subgroup contains aldehyde reductase and flavonoid reductase of the extended SDR-type and related proteins. Proteins in this subgroup have a complete SDR-type active site tetrad and a close match to the canonical extended SDR NADP-binding motif. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 295

>gnl|CDD|219687 pfam07993, NAD_binding_4, Male sterility protein

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 31/134 (23%)

Query: 63  GGNGFVGSHICREALDRGLTV-------ASLSRSGRSSLRDSWANNVIWHQ--------- 106
           G  GF+G  +  + L     V       A    S    LR       ++ +         
Sbjct: 3   GATGFLGKVLLEKLLRSTPEVKIYCLVRAKDGESALERLRQELLKYGLFDRLKALERIIP 62

Query: 107 --GNL------LSSDSWKEALDGVTAVISC---VGGFGSNSYMYKIN--GTANINAIRAA 153
             G+L      LS + ++E  + V  +I     V      S +   N  GT  +  +R A
Sbjct: 63  VAGDLSEPNLGLSDEDFQELAEEVDVIIHNAATVNFVEPYSDLRATNVLGTREV--LRLA 120

Query: 154 SEKGVKRFVYISAA 167
            +     F ++S A
Sbjct: 121 KQMKKLPFHHVSTA 134

This family represents the C-terminal region of the male sterility protein in a number of arabidopsis and drosophila. A sequence-related jojoba acyl CoA reductase is also included. Length = 245

>gnl|CDD|187572 cd05262, SDR_a7, atypical (a) SDRs, subgroup 7

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 8/113 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSW 115
           K+ V G  GF+GS + RE +  G  V  L+RS   +  L  + A     H+G+L   D  
Sbjct: 2   KVFVTGATGFIGSAVVRELVAAGHEVVGLARSDAGAAKLEAAGA---QVHRGDLEDLDIL 58

Query: 116 KEALDGVTAVISC--VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
           ++A     AVI       F + +   +++  A I A+  A     K  +Y S 
Sbjct: 59  RKAAAEADAVIHLAFTHDFDNFAQACEVDRRA-IEALGEALRGTGKPLIYTSG 110

This subgroup contains atypical SDRs of unknown function. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 291

>gnl|CDD|187561 cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 36/112 (32%), Positives = 48/112 (42%), Gaps = 5/112 (4%)

Query: 59  LLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSSLRDSWAN-NVIWHQGNLLSSDSWK 116
           +LV G  G  G  + R  L D G  V +L+R   S    + A   V   QG+L   +S +
Sbjct: 1   ILVFGATGKQGGSVVRALLKDPGFKVRALTRDPSSPAAKALAAPGVEVVQGDLDDPESLE 60

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
            AL GV  V   V  F       +I      N + AA   GV+ FV+ S  D
Sbjct: 61  AALKGVYGVFL-VTDFWEAGGEDEI--AQGKNVVDAAKRAGVQHFVFSSVPD 109

NmrA and HSCARG like proteins. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 242

>gnl|CDD|187567 cd05257, Arna_like_SDR_e, Arna decarboxylase_like, extended (e) SDRs

 Score = 49.6 bits (119), Expect = 2e-07
 Identities = 28/120 (23%), Positives = 48/120 (40%), Gaps = 14/120 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWH--QGNLLSSD 113
            +LV G +GF+GSH+    L  G  +    +  S  S      A +  +H   G++  + 
Sbjct: 1   NVLVTGADGFIGSHLTERLLREGHEVRALDIYNSFNSWGLLDNAVHDRFHFISGDVRDAS 60

Query: 114 SWKEALDGVTAVI---SCVGGFGSN----SYMYK-INGTANINAIRAASEKGVKRFVYIS 165
             +  +     V    + +    S     SY+   + GT N+  + AA     KR V+ S
Sbjct: 61  EVEYLVKKCDVVFHLAALIAIPYSYTAPLSYVETNVFGTLNV--LEAACVLYRKRVVHTS 118

Decarboxylase domain of ArnA. ArnA, is an enzyme involved in the modification of outer membrane protein lipid A of gram-negative bacteria. It is a bifunctional enzyme that catalyzes the NAD-dependent decarboxylation of UDP-glucuronic acid and N-10-formyltetrahydrofolate-dependent formylation of UDP-4-amino-4-deoxy-l-arabinose; its NAD-dependent decaboxylating activity is in the C-terminal 360 residues. This subgroup belongs to the extended SDR family, however the NAD binding motif is not a perfect match and the upstream Asn of the canonical active site tetrad is not conserved. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316

>gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 12/122 (9%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSD 113
           K+LV GG G++GSH  R+ L+ G   + + +LS   R +L        V + +G+L   +
Sbjct: 1   KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVTFVEGDLRDRE 60

Query: 114 SWKEALDG--VTAVI-----SCVGGFGSNSYMYKINGTAN-INAIRAASEKGVKRFVYIS 165
                 +   + AVI       VG        Y  N     +N + A  + GVK+F++ S
Sbjct: 61  LLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYYRNNVVGTLNLLEAMQQAGVKKFIFSS 120

Query: 166 AA 167
           +A
Sbjct: 121 SA 122

Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328

>gnl|CDD|187540 cd05229, SDR_a3, atypical (a) SDRs, subgroup 3

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
              VLG +G +G  + RE   RG  V  +SRSG           V     + + + S   
Sbjct: 1   TAHVLGASGPIGREVARELRRRGWDVRLVSRSGSKLAWLP---GVEIVAADAMDASSVIA 57

Query: 118 ALDGVTAVISCVG 130
           A  G   +  C  
Sbjct: 58  AARGADVIYHCAN 70

These atypical SDR family members of unknown function have a glycine-rich NAD(P)-binding motif consensus that is very similar to the extended SDRs, GXXGXXG. Generally, this group has poor conservation of the active site tetrad, However, individual sequences do contain matches to the YXXXK active site motif, and generally Tyr or Asn in place of the upstream Ser found in most SDRs. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 302

>gnl|CDD|187671 cd09811, 3b-HSD_HSDB1_like_SDR_e, human 3beta-HSD (hydroxysteroid dehydrogenase) and HSD3B1(delta 5-delta 4-isomerase)-like, extended (e) SDRs

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 23/125 (18%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWH------------- 105
            LV GG GF+G HI R  L+R   +  +       L  ++   +I H             
Sbjct: 2   CLVTGGGGFLGQHIIRLLLERKEELKEI-----RVLDKAFGPELIEHFEKSQGKTYVTDI 56

Query: 106 QGNLLSSDSWKEALDGVTAVISCVGG---FGSNSY--MYKINGTANINAIRAASEKGVKR 160
           +G++        A  GV+ VI        FG  +Y  + ++N       + A  +  VKR
Sbjct: 57  EGDIKDLSFLFRACQGVSVVIHTAAIVDVFGPPNYEELEEVNVNGTQAVLEACVQNNVKR 116

Query: 161 FVYIS 165
            VY S
Sbjct: 117 LVYTS 121

This extended-SDR subgroup includes human 3 beta-HSD/HSD3B1 and C(27) 3beta-HSD/ [3beta-hydroxy-delta(5)-C(27)-steroid oxidoreductase; HSD3B7], and related proteins. These proteins have the characteristic active site tetrad and NAD(P)-binding motif of extended SDRs. 3 beta-HSD catalyzes the oxidative conversion of delta 5-3 beta-hydroxysteroids to the delta 4-3-keto configuration; this activity is essential for the biosynthesis of all classes of hormonal steroids. C(27) 3beta-HSD is a membrane-bound enzyme of the endoplasmic reticulum, it catalyzes the isomerization and oxidation of 7alpha-hydroxylated sterol intermediates, an early step in bile acid biosynthesis. Mutations in the human gene encoding C(27) 3beta-HSD underlie a rare autosomal recessive form of neonatal cholestasis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid sythase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 354

>gnl|CDD|187564 cd05254, dTDP_HR_like_SDR_e, dTDP-6-deoxy-L-lyxo-4-hexulose reductase and related proteins, extended (e) SDRs

 Score = 43.4 bits (103), Expect = 3e-05
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 32/122 (26%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L+ G  G +G  + R   +RG  V    RS                + +L   D+ +E
Sbjct: 1   KILITGATGMLGRALVRLLKERGYEVIGTGRS-----------RASLFKLDLTDPDAVEE 49

Query: 118 ALDGV--TAVISCVGGFGSNSYM------------YKINGTANINAIRAASEKGVKRFVY 163
           A+       +I+C        Y             Y++N  A  N  RAA E G  R ++
Sbjct: 50  AIRDYKPDVIINCAA------YTRVDKCESDPELAYRVNVLAPENLARAAKEVGA-RLIH 102

Query: 164 IS 165
           IS
Sbjct: 103 IS 104

dTDP-6-deoxy-L-lyxo-4-hexulose reductase, an extended SDR, synthesizes dTDP-L-rhamnose from alpha-D-glucose-1-phosphate, providing the precursor of L-rhamnose, an essential cell wall component of many pathogenic bacteria. This subgroup has the characteristic active site tetrad and NADP-binding motif. This subgroup also contains human MAT2B, the regulatory subunit of methionine adenosyltransferase (MAT); MAT catalyzes S-adenosylmethionine synthesis. The human gene encoding MAT2B encodes two major splicing variants which are induced in human cell liver cancer and regulate HuR, an mRNA-binding protein which stabilizes the mRNA of several cyclins, to affect cell proliferation. Both MAT2B variants include this extended SDR domain. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 280

>gnl|CDD|187661 cd08958, FR_SDR_e, flavonoid reductase (FR), extended (e) SDRs

 Score = 42.9 bits (102), Expect = 3e-05
 Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 31/129 (24%)

Query: 61  VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-------------SWANNVIW-HQ 106
           V G +GF+GS + +  L RG TV       R+++RD               A   +   +
Sbjct: 3   VTGASGFIGSWLVKRLLQRGYTV-------RATVRDPGDEKKVAHLLELEGAKERLKLFK 55

Query: 107 GNLLSSDSWKEALDGVTAV--ISCVGGFGSNSY---MYK--INGTANINAIRAASE-KGV 158
            +LL   S+  A+DG   V  ++    F S      M +  + GT  +N + A ++ K V
Sbjct: 56  ADLLDYGSFDAAIDGCDGVFHVASPVDFDSEDPEEEMIEPAVKGT--LNVLEACAKAKSV 113

Query: 159 KRFVYISAA 167
           KR V+ S+ 
Sbjct: 114 KRVVFTSSV 122

This subgroup contains FRs of the extended SDR-type and related proteins. These FRs act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites; they have the characteristic active site triad of the SDRs (though not the upstream active site Asn) and a NADP-binding motif that is very similar to the typical extended SDR motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 293

>gnl|CDD|178298 PLN02695, PLN02695, GDP-D-mannose-3',5'-epimerase

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 45/148 (30%), Positives = 64/148 (43%), Gaps = 21/148 (14%)

Query: 52  PPPPSEKL--LVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGN 108
           P  PSEKL   + G  GF+ SHI R     G   +AS  +       D + +   +H  +
Sbjct: 15  PYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHE--FHLVD 72

Query: 109 LLSSDSWKEALDGVTAVISC---VGGFG---SNSYMYKINGTA-NINAIRAASEKGVKRF 161
           L   ++  +   GV  V +    +GG G   SN  +   N T  + N + AA   GVKRF
Sbjct: 73  LRVMENCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRF 132

Query: 162 VYISAADFGVANYLLQGYYEGKVLSSDV 189
            Y S+A           Y E K L ++V
Sbjct: 133 FYASSACI---------YPEFKQLETNV 151

Length = 370

>gnl|CDD|187575 cd05265, SDR_a1, atypical (a) SDRs, subgroup 1

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 16/113 (14%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L++GG  F+G  +  E L  G  V   +R GR+         V    G+    D+ +E
Sbjct: 2   KILIIGGTRFIGKALVEELLAAGHDVTVFNR-GRTKPDLP--EGVEHIVGDRNDRDALEE 58

Query: 118 ALDGVT--AVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
            L G     V+  +         Y       +     A +  VK++++IS+A 
Sbjct: 59  LLGGEDFDVVVDTIA--------YT---PRQVERALDAFKGRVKQYIFISSAS 100

Atypical SDRs in this subgroup are poorly defined and have been identified putatively as isoflavones reductase, sugar dehydratase, mRNA binding protein etc. Atypical SDRs are distinct from classical SDRs. Members of this subgroup retain the canonical active site triad (though not the upstream Asn found in most SDRs) but have an unusual putative glycine-rich NAD(P)-binding motif, GGXXXXG, in the usual location. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 250

>gnl|CDD|187553 cd05242, SDR_a8, atypical (a) SDRs, subgroup 8

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+++ GG GF+G  + R     G  V  LSR    +     A  + W     LS   W  
Sbjct: 1   KIVITGGTGFIGRALTRRLTAAGHEVVVLSRRPGKAEGL--AEVITWDG---LSLGPW-- 53

Query: 118 ALDGVTAVI 126
            L G  AVI
Sbjct: 54  ELPGADAVI 62

This subgroup contains atypical SDRs of unknown function. Proteins in this subgroup have a glycine-rich NAD(P)-binding motif consensus that resembles that of the extended SDRs, (GXXGXXG or GGXGXXG), but lacks the characteristic active site residues of the SDRs. A Cys often replaces the usual Lys of the YXXXK active site motif, while the upstream Ser is generally present and Arg replaces the usual Asn. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 296

>gnl|CDD|181609 PRK09009, PRK09009, C factor cell-cell signaling protein; Provisional

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 4/76 (5%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK- 116
            +L++GG+G +G  + ++ L+R    A++  + R    D   +NV WH  ++      K 
Sbjct: 2   NILIVGGSGGIGKAMVKQLLER-YPDATVHATYRHHKPDFQHDNVQWHALDVTDEAEIKQ 60

Query: 117 --EALDGVTAVISCVG 130
             E    +  +I+CVG
Sbjct: 61  LSEQFTQLDWLINCVG 76

Length = 235

>gnl|CDD|224016 COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 26/116 (22%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L+ G NG +G+ + R AL     V +  R                 + ++   D+  E
Sbjct: 2   KILITGANGQLGTELRR-ALPGEFEVIATDR----------------AELDITDPDAVLE 44

Query: 118 ALDGV--TAVISC-----VGGFGSNSYM-YKINGTANINAIRAASEKGVKRFVYIS 165
            +       VI+      V    S   + + +N T   N  RAA+E G  R V+IS
Sbjct: 45  VIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA-RLVHIS 99

Length = 281

>gnl|CDD|234294 TIGR03649, ergot_EASG, ergot alkaloid biosynthesis protein, AFUA_2G17970 family

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 34/117 (29%), Positives = 42/117 (35%), Gaps = 18/117 (15%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-------SWANNVIWHQGNLLS 111
           +L+ GG G   S I R      +     SRS  SS           W +   W   N  S
Sbjct: 2   ILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWD--NPFS 59

Query: 112 SDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           SD      DG+   IS V                 I  I  A  KGV+RFV +SA+ 
Sbjct: 60  SD------DGMEPEISAVYLVAPPIPDL---APPMIKFIDFARSKGVRRFVLLSASI 107

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. Length = 285

>gnl|CDD|187542 cd05231, NmrA_TMR_like_1_SDR_a, NmrA (a transcriptional regulator) and triphenylmethane reductase (TMR) like proteins, subgroup 1, atypical (a) SDRs

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 33/110 (30%), Positives = 45/110 (40%), Gaps = 6/110 (5%)

Query: 59  LLVLGGNGFVGSHICREALDRGLTVASLSRSGR--SSLRDSWANNVIWHQGNLLSSDSWK 116
           +LV G  G +GS +    L+ G  V +L RS    ++L    A  V+   G+L       
Sbjct: 1   ILVTGATGRIGSKVATTLLEAGRPVRALVRSDERAAALAARGAEVVV---GDLDDPAVLA 57

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
            AL GV AV        +          A   A  A  E GVKR V +S+
Sbjct: 58  AALAGVDAVFFLAPPAPTADARPGYVQAAEAFA-SALREAGVKRVVNLSS 106

Atypical SDRs related to NMRa, TMR, and HSCARG (an NADPH sensor). This subgroup resembles the SDRs and has a partially conserved characteristic [ST]GXXGXXG NAD-binding motif, but lacks the conserved active site residues. NmrA is a negative transcriptional regulator of various fungi, involved in the post-translational modulation of the GATA-type transcription factor AreA. NmrA lacks the canonical GXXGXXG NAD-binding motif and has altered residues at the catalytic triad, including a Met instead of the critical Tyr residue. NmrA may bind nucleotides but appears to lack any dehydrogenase activity. HSCARG has been identified as a putative NADP-sensing molecule, and redistributes and restructures in response to NADPH/NADP ratios. Like NmrA, it lacks most of the active site residues of the SDR family, but has an NAD(P)-binding motif similar to the extended SDR family, GXXGXXG. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Atypical SDRs are distinct from classical SDRs. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 259

>gnl|CDD|187577 cd05267, SDR_a6, atypical (a) SDRs, subgroup 6

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 18/120 (15%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR--DSWANNVIWHQGNLLSSD 113
           K+L+LG NG     I REA    L  +   L+   R++ R     +  V   +G+ L+SD
Sbjct: 2   KVLILGANG----EIAREATTMLLENSNVELTLFLRNAHRLLHLKSARVTVVEGDALNSD 57

Query: 114 SWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVAN 173
             K A+ G   V + +GG                N ++A    GVKR ++ ++   G+ +
Sbjct: 58  DLKAAMRGQDVVYANLGGTDL--------DQQAENVVQAMKAVGVKRLIWTTS--LGIYD 107

These atypical SDR family members of unknown function have only a partial match to a prototypical glycine-rich NAD(P)-binding motif consensus, GXXG, which conserves part of the motif of extended SDR. Furthermore, they lack the characteristic active site residues of the SDRs. This subgroup is related to phenylcoumaran benzylic ether reductase, an NADPH-dependent aromatic alcohol reductase. One member is identified as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 203

>gnl|CDD|187550 cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 30/119 (25%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+LV G  G VGS I R    RG   +   +        L             +L   ++
Sbjct: 1   KILVTGHRGLVGSAIVRVLARRGYENVVFRT-----SKEL-------------DLTDQEA 42

Query: 115 WKEALDGV--TAVISC---VGG-FGSNSY---MYKINGTANINAIRAASEKGVKRFVYI 164
            +   +      VI     VGG   + +Y     + N   N N I AA   GVK+ V++
Sbjct: 43  VRAFFEKEKPDYVIHLAAKVGGIVANMTYPADFLRDNLLINDNVIHAAHRFGVKKLVFL 101

GDP-fucose synthetase (aka 3, 5-epimerase-4-reductase) acts in the NADP-dependent synthesis of GDP-fucose from GDP-mannose. Two activities have been proposed for the same active site: epimerization and reduction. Proteins in this subgroup are extended SDRs, which have a characteristic active site tetrad and an NADP-binding motif, [AT]GXXGXXG, that is a close match to the archetypical form. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300

>gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs

 Score = 38.3 bits (90), Expect = 0.001
 Identities = 33/130 (25%), Positives = 52/130 (40%), Gaps = 29/130 (22%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----------LTVASLSRSGRSSLRDSWAN-NVIWHQ 106
           K+LV GG GF+GS+  R  L++           LT A        +L D  ++    + +
Sbjct: 2   KILVTGGAGFIGSNFVRYLLNKYPDYKIINLDKLTYA----GNLENLEDVSSSPRYRFVK 57

Query: 107 GNLLSSDSWKEAL--DGVTAVISCVG------GFGSNSYMYKIN--GTANI-NAIRAASE 155
           G++  ++        + + AVI                   + N  GT  +  A R    
Sbjct: 58  GDICDAELVDRLFEEEKIDAVIHFAAESHVDRSISDPEPFIRTNVLGTYTLLEAARKY-- 115

Query: 156 KGVKRFVYIS 165
            GVKRFV+IS
Sbjct: 116 -GVKRFVHIS 124

This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315

>gnl|CDD|233570 TIGR01777, yfcH, TIGR01777 family protein

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 27/131 (20%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           L+ GG GF+G  + +    RG  V  L+RS        W     W       +    ++L
Sbjct: 2   LITGGTGFIGRALTQRLTKRGHEVTILTRSPPPGANTKWEGYKPW-------AGEDADSL 54

Query: 120 DGVTAVISCVG----------GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF 169
           +G  AVI+  G                   +I+ T  +    AA+E+  K F+  SA   
Sbjct: 55  EGADAVINLAGEPIADKRWTEERKQEIRDSRIDTTRLLVEAIAAAEQKPKVFISASAV-- 112

Query: 170 GVANYLLQGYY 180
                   GYY
Sbjct: 113 --------GYY 115

This model represents a clade of proteins of unknown function including the E. coli yfcH protein [Hypothetical proteins, Conserved]. Length = 291

>gnl|CDD|224662 COG1748, LYS9, Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)

Query: 57  EKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
            K+LV+G  G VGS +  +    G   +T+A  S+   + + +     V   Q +    D
Sbjct: 2   MKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVD 60

Query: 114 SWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV 158
           +    +     VI+    F        I        ++A  + GV
Sbjct: 61  ALVALIKDFDLVINAAPPF----VDLTI--------LKACIKTGV 93

Length = 389

>gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 39/131 (29%), Positives = 59/131 (45%), Gaps = 29/131 (22%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR------DSWANNVIWHQGNLL 110
           LV GG G++GSH   + L  G  V    +L  S   +LR          +N+++H+ +L 
Sbjct: 9   LVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLR 68

Query: 111 SSDSWKEALDGV------TAVI-----SCVGGFGSNSYMYKIN---GTANINAIRAASEK 156
                KEAL+ V       AVI       VG   +   +Y  N   GT  IN +   ++ 
Sbjct: 69  D----KEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYYDNNLVGT--INLLEVMAKH 122

Query: 157 GVKRFVYISAA 167
           G K+ V+ S+A
Sbjct: 123 GCKKLVFSSSA 133

Length = 352

>gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 31/122 (25%), Positives = 49/122 (40%), Gaps = 19/122 (15%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWAN-NVIWHQGNLLSSDSW 115
           LV GG GF+GSH+    L+ G  V    +LS   R ++   + N    + + +LL +   
Sbjct: 3   LVTGGAGFIGSHLVDRLLEEGNEVVVVDNLSSGRRENIEPEFENKAFRFVKRDLLDTADK 62

Query: 116 KEALDGVTAVISCVGGFGSNSYM----------YKINGTANINAIRAASEKGVKRFVYIS 165
             A      V        +N  +           + N  A  N + A    GVKR V+ S
Sbjct: 63  V-AKKDGDTVFH----LAANPDVRLGATDPDIDLEENVLATYNVLEAMRANGVKRIVFAS 117

Query: 166 AA 167
           ++
Sbjct: 118 SS 119

UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305

>gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family

 Score = 37.3 bits (87), Expect = 0.003
 Identities = 33/134 (24%), Positives = 63/134 (47%), Gaps = 24/134 (17%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA----------NNVIWHQGNL 109
           LV G +GF+GSH+    + +G  V +          +SW           + +    G++
Sbjct: 2   LVTGADGFIGSHLVEALVRQGYEVRAFVLYNS---FNSWGWLDTSPPEVKDKIEVVTGDI 58

Query: 110 LSSDSWKEALDGVTAV------ISCVGGFGS-NSYM-YKINGTANINAIRAASEKGVKRF 161
              DS ++A+ G   V      I+    + + +SY+   + GT N+  ++AA + GV++ 
Sbjct: 59  RDPDSVRKAMKGCDVVFHLAALIAIPYSYIAPDSYVDTNVTGTLNV--LQAARDLGVEKV 116

Query: 162 VYISAAD-FGVANY 174
           V+ S ++ +G A Y
Sbjct: 117 VHTSTSEVYGTAQY 130

This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297

>gnl|CDD|225857 COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 32/142 (22%), Positives = 51/142 (35%), Gaps = 25/142 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDR------GLTVASLSRSGRSSLRD----------SWANN 101
            +L+ G  GF+G+++  E LDR       L  A    +  + L              A+ 
Sbjct: 2   NVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADR 61

Query: 102 VIWHQGNL------LSSDSWKEALDGVTAVISC---VGGFGSNSYMYKINGTANINAIRA 152
           V    G+L      LS  +W+E  + V  +I     V      S +   N       +R 
Sbjct: 62  VEVVAGDLAEPDLGLSERTWQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRL 121

Query: 153 ASEKGVKRFVYISAADFGVANY 174
           A+    K   Y+S+   G   Y
Sbjct: 122 AATGKPKPLHYVSSISVGETEY 143

Length = 382

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
COG1087	329	GalE UDP-glucose 4-epimerase [Cell envelope biogen	99.94
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	99.93
PF01073	280	3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso	99.93
PRK15181	348	Vi polysaccharide biosynthesis protein TviC; Provi	99.93
PLN02214	342	cinnamoyl-CoA reductase	99.92
PLN00198	338	anthocyanidin reductase; Provisional	99.91
PLN02427	386	UDP-apiose/xylose synthase	99.91
PLN02572	442	UDP-sulfoquinovose synthase	99.91
PLN02695	370	GDP-D-mannose-3',5'-epimerase	99.9
TIGR01472	343	gmd GDP-mannose 4,6-dehydratase. Excluded from thi	99.9
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	99.9
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	99.9
PLN02896	353	cinnamyl-alcohol dehydrogenase	99.89
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	99.89
PLN02650	351	dihydroflavonol-4-reductase	99.89
CHL00194	317	ycf39 Ycf39; Provisional	99.89
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	99.89
COG1086	588	Predicted nucleoside-diphosphate sugar epimerases	99.89
PLN02653	340	GDP-mannose 4,6-dehydratase	99.89
PRK08125	660	bifunctional UDP-glucuronic acid decarboxylase/UDP	99.89
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	99.88
COG0451	314	WcaG Nucleoside-diphosphate-sugar epimerases [Cell	99.88
PF02719	293	Polysacc_synt_2: Polysaccharide biosynthesis prote	99.88
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	99.88
PRK09987	299	dTDP-4-dehydrorhamnose reductase; Provisional	99.88
PRK10217	355	dTDP-glucose 4,6-dehydratase; Provisional	99.87
COG1088	340	RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope	99.87
PF07993	249	NAD_binding_4: Male sterility protein; InterPro: I	99.87
PLN02240	352	UDP-glucose 4-epimerase	99.87
PLN02686	367	cinnamoyl-CoA reductase	99.87
PRK10675	338	UDP-galactose-4-epimerase; Provisional	99.87
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	99.87
PF01370	236	Epimerase: NAD dependent epimerase/dehydratase fam	99.86
PLN02166	436	dTDP-glucose 4,6-dehydratase	99.86
PLN02583	297	cinnamoyl-CoA reductase	99.86
COG3320	382	Putative dehydrogenase domain of multifunctional n	99.86
KOG1371	343	consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo	99.86
PLN02206	442	UDP-glucuronate decarboxylase	99.86
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	99.86
KOG1430	361	consensus C-3 sterol dehydrogenase/3-beta-hydroxys	99.86
PRK10084	352	dTDP-glucose 4,6 dehydratase; Provisional	99.85
PLN02260	668	probable rhamnose biosynthetic enzyme	99.85
PRK06482	276	short chain dehydrogenase; Provisional	99.85
PRK06180	277	short chain dehydrogenase; Provisional	99.84
PLN02996	491	fatty acyl-CoA reductase	99.84
TIGR01181	317	dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This	99.84
PRK05993	277	short chain dehydrogenase; Provisional	99.84
PRK06398	258	aldose dehydrogenase; Validated	99.84
PRK06179	270	short chain dehydrogenase; Provisional	99.83
PRK06194	287	hypothetical protein; Provisional	99.83
PRK11150	308	rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro	99.83
PLN02778	298	3,5-epimerase/4-reductase	99.83
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	99.83
PRK07201	657	short chain dehydrogenase; Provisional	99.83
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.83
PRK07856	252	short chain dehydrogenase; Provisional	99.83
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	99.83
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	99.82
PRK05717	255	oxidoreductase; Validated	99.82
PRK06182	273	short chain dehydrogenase; Validated	99.82
PRK07023	243	short chain dehydrogenase; Provisional	99.82
PRK07806	248	short chain dehydrogenase; Provisional	99.82
TIGR01214	287	rmlD dTDP-4-dehydrorhamnose reductase. This enzyme	99.82
PRK05866	293	short chain dehydrogenase; Provisional	99.82
PF04321	286	RmlD_sub_bind: RmlD substrate binding domain; Inte	99.82
TIGR01746	367	Thioester-redct thioester reductase domain. It has	99.82
PLN03209	576	translocon at the inner envelope of chloroplast su	99.81
TIGR01179	328	galE UDP-glucose-4-epimerase. This enzyme intercon	99.81
PRK06523	260	short chain dehydrogenase; Provisional	99.81
TIGR02197	314	heptose_epim ADP-L-glycero-D-manno-heptose-6-epime	99.81
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	99.81
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	99.81
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	99.81
PRK07523	255	gluconate 5-dehydrogenase; Provisional	99.81
PLN02253	280	xanthoxin dehydrogenase	99.81
COG0300	265	DltE Short-chain dehydrogenases of various substra	99.81
PRK07478	254	short chain dehydrogenase; Provisional	99.81
PLN02725	306	GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas	99.81
PRK08263	275	short chain dehydrogenase; Provisional	99.81
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	99.81
COG1091	281	RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo	99.81
PRK07814	263	short chain dehydrogenase; Provisional	99.81
PRK09291	257	short chain dehydrogenase; Provisional	99.81
PRK12745	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.81
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.81
PRK07063	260	short chain dehydrogenase; Provisional	99.8
PRK06197	306	short chain dehydrogenase; Provisional	99.8
PRK07024	257	short chain dehydrogenase; Provisional	99.8
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	99.8
PRK10538	248	malonic semialdehyde reductase; Provisional	99.8
PRK07774	250	short chain dehydrogenase; Provisional	99.8
PRK09135	249	pteridine reductase; Provisional	99.8
PRK12825	249	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.8
PRK12827	249	short chain dehydrogenase; Provisional	99.8
PRK08278	273	short chain dehydrogenase; Provisional	99.8
PRK08267	260	short chain dehydrogenase; Provisional	99.8
PRK08264	238	short chain dehydrogenase; Validated	99.8
PRK06483	236	dihydromonapterin reductase; Provisional	99.8
PRK05875	276	short chain dehydrogenase; Provisional	99.8
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	99.79
PRK12937	245	short chain dehydrogenase; Provisional	99.79
PRK12746	254	short chain dehydrogenase; Provisional	99.79
PRK06101	240	short chain dehydrogenase; Provisional	99.79
PRK07453	322	protochlorophyllide oxidoreductase; Validated	99.79
PRK08251	248	short chain dehydrogenase; Provisional	99.79
PRK08265	261	short chain dehydrogenase; Provisional	99.79
PRK06914	280	short chain dehydrogenase; Provisional	99.79
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
PRK06138	252	short chain dehydrogenase; Provisional	99.79
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	99.79
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	99.79
PRK09134	258	short chain dehydrogenase; Provisional	99.79
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.79
PRK08220	252	2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated	99.79
PRK07067	257	sorbitol dehydrogenase; Provisional	99.79
KOG1429	350	consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro	99.79
PRK08213	259	gluconate 5-dehydrogenase; Provisional	99.79
PRK07775	274	short chain dehydrogenase; Provisional	99.79
PRK07904	253	short chain dehydrogenase; Provisional	99.79
PRK07825	273	short chain dehydrogenase; Provisional	99.79
PRK06841	255	short chain dehydrogenase; Provisional	99.79
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	99.79
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	99.79
PRK06171	266	sorbitol-6-phosphate 2-dehydrogenase; Provisional	99.79
PRK05876	275	short chain dehydrogenase; Provisional	99.79
PRK07454	241	short chain dehydrogenase; Provisional	99.79
PRK07102	243	short chain dehydrogenase; Provisional	99.79
PRK07060	245	short chain dehydrogenase; Provisional	99.79
PRK07890	258	short chain dehydrogenase; Provisional	99.79
PRK05693	274	short chain dehydrogenase; Provisional	99.79
PRK08339	263	short chain dehydrogenase; Provisional	99.79
PRK06128	300	oxidoreductase; Provisional	99.78
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	99.78
PRK06500	249	short chain dehydrogenase; Provisional	99.78
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.78
PRK07035	252	short chain dehydrogenase; Provisional	99.78
PRK12935	247	acetoacetyl-CoA reductase; Provisional	99.78
PRK12742	237	oxidoreductase; Provisional	99.78
PRK08628	258	short chain dehydrogenase; Provisional	99.78
PRK08589	272	short chain dehydrogenase; Validated	99.78
PRK06114	254	short chain dehydrogenase; Provisional	99.78
PRK12367	245	short chain dehydrogenase; Provisional	99.78
PRK08643	256	acetoin reductase; Validated	99.78
PRK08085	254	gluconate 5-dehydrogenase; Provisional	99.78
PRK09186	256	flagellin modification protein A; Provisional	99.78
PRK12939	250	short chain dehydrogenase; Provisional	99.78
PRK06196	315	oxidoreductase; Provisional	99.78
PRK08277	278	D-mannonate oxidoreductase; Provisional	99.78
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	99.78
PRK09242	257	tropinone reductase; Provisional	99.78
PRK05867	253	short chain dehydrogenase; Provisional	99.77
PRK05557	248	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.77
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	99.77
PRK05854	313	short chain dehydrogenase; Provisional	99.77
PRK06057	255	short chain dehydrogenase; Provisional	99.77
PLN02260	668	probable rhamnose biosynthetic enzyme	99.77
PRK12747	252	short chain dehydrogenase; Provisional	99.77
PRK05650	270	short chain dehydrogenase; Provisional	99.77
PRK07097	265	gluconate 5-dehydrogenase; Provisional	99.77
PRK12743	256	oxidoreductase; Provisional	99.77
PRK12829	264	short chain dehydrogenase; Provisional	99.77
PRK12828	239	short chain dehydrogenase; Provisional	99.77
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	99.77
PRK08219	227	short chain dehydrogenase; Provisional	99.77
PRK12824	245	acetoacetyl-CoA reductase; Provisional	99.77
PRK07577	234	short chain dehydrogenase; Provisional	99.77
PRK07985	294	oxidoreductase; Provisional	99.77
PRK06181	263	short chain dehydrogenase; Provisional	99.77
PRK06701	290	short chain dehydrogenase; Provisional	99.77
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	99.77
PRK07109	334	short chain dehydrogenase; Provisional	99.77
PRK08226	263	short chain dehydrogenase; Provisional	99.77
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	99.76
PRK05884	223	short chain dehydrogenase; Provisional	99.76
PRK06172	253	short chain dehydrogenase; Provisional	99.76
PRK08993	253	2-deoxy-D-gluconate 3-dehydrogenase; Validated	99.76
PRK12938	246	acetyacetyl-CoA reductase; Provisional	99.76
PRK06924	251	short chain dehydrogenase; Provisional	99.76
PRK12744	257	short chain dehydrogenase; Provisional	99.76
PRK07326	237	short chain dehydrogenase; Provisional	99.76
PRK08177	225	short chain dehydrogenase; Provisional	99.76
PRK05865	854	hypothetical protein; Provisional	99.76
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.76
PRK07576	264	short chain dehydrogenase; Provisional	99.76
PRK06077	252	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.76
PRK06124	256	gluconate 5-dehydrogenase; Provisional	99.76
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	99.76
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	99.76
PRK07677	252	short chain dehydrogenase; Provisional	99.76
PRK05872	296	short chain dehydrogenase; Provisional	99.76
PRK06139	330	short chain dehydrogenase; Provisional	99.76
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.75
PRK07062	265	short chain dehydrogenase; Provisional	99.75
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.75
PRK07074	257	short chain dehydrogenase; Provisional	99.75
PRK07069	251	short chain dehydrogenase; Validated	99.75
PRK12748	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.75
PRK06484	520	short chain dehydrogenase; Validated	99.74
PRK06123	248	short chain dehydrogenase; Provisional	99.74
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	99.74
PRK07041	230	short chain dehydrogenase; Provisional	99.74
PRK06949	258	short chain dehydrogenase; Provisional	99.74
PRK07831	262	short chain dehydrogenase; Provisional	99.74
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.74
PRK09072	263	short chain dehydrogenase; Provisional	99.74
PRK08017	256	oxidoreductase; Provisional	99.74
TIGR01829	242	AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy	99.74
PLN02503	605	fatty acyl-CoA reductase 2	99.74
PRK07791	286	short chain dehydrogenase; Provisional	99.74
PRK06947	248	glucose-1-dehydrogenase; Provisional	99.73
PRK08703	239	short chain dehydrogenase; Provisional	99.73
PRK08340	259	glucose-1-dehydrogenase; Provisional	99.73
PRK08936	261	glucose-1-dehydrogenase; Provisional	99.73
TIGR02415	254	23BDH acetoin reductases. One member of this famil	99.73
PRK09730	247	putative NAD(P)-binding oxidoreductase; Provisiona	99.73
smart00822	180	PKS_KR This enzymatic domain is part of bacterial	99.73
PRK07578	199	short chain dehydrogenase; Provisional	99.73
TIGR02685	267	pter_reduc_Leis pteridine reductase. Pteridine red	99.72
PRK05855	582	short chain dehydrogenase; Validated	99.72
PRK12859	256	3-ketoacyl-(acyl-carrier-protein) reductase; Provi	99.72
PRK07201	657	short chain dehydrogenase; Provisional	99.72
TIGR01831	239	fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas	99.72
PRK06953	222	short chain dehydrogenase; Provisional	99.72
PRK06198	260	short chain dehydrogenase; Provisional	99.72
TIGR01830	239	3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re	99.72
PLN00016	378	RNA-binding protein; Provisional	99.71
PRK06125	259	short chain dehydrogenase; Provisional	99.71
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	99.71
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	99.71
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	99.71
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	99.71
PLN02780	320	ketoreductase/ oxidoreductase	99.71
PRK07832	272	short chain dehydrogenase; Provisional	99.71
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	99.7
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	99.7
PRK06940	275	short chain dehydrogenase; Provisional	99.7
PRK08324	681	short chain dehydrogenase; Validated	99.7
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.7
PRK06484	520	short chain dehydrogenase; Validated	99.7
PRK09009	235	C factor cell-cell signaling protein; Provisional	99.7
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	99.69
PRK05599	246	hypothetical protein; Provisional	99.69
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.68
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	99.68
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	99.68
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.68
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	99.67
PRK08303	305	short chain dehydrogenase; Provisional	99.67
PRK12320	699	hypothetical protein; Provisional	99.67
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	99.66
COG1089	345	Gmd GDP-D-mannose dehydratase [Cell envelope bioge	99.66
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	99.66
KOG0747	331	consensus Putative NAD+-dependent epimerases [Carb	99.66
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	99.66
TIGR01500	256	sepiapter_red sepiapterin reductase. This model de	99.66
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	99.66
PRK08862	227	short chain dehydrogenase; Provisional	99.65
TIGR01777	292	yfcH conserved hypothetical protein TIGR01777. Thi	99.64
KOG0725	270	consensus Reductases with broad range of substrate	99.63
KOG1208	314	consensus Dehydrogenases with different specificit	99.63
KOG2865	391	consensus NADH:ubiquinone oxidoreductase, NDUFA9/3	99.63
KOG1610	322	consensus Corticosteroid 11-beta-dehydrogenase and	99.62
PLN00015	308	protochlorophyllide reductase	99.61
COG1028	251	FabG Dehydrogenases with different specificities (	99.6
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	99.6
KOG1611	249	consensus Predicted short chain-type dehydrogenase	99.59
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	99.59
COG0702	275	Predicted nucleoside-diphosphate-sugar epimerases	99.58
KOG1203	411	consensus Predicted dehydrogenase [Carbohydrate tr	99.58
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	99.57
KOG1209	289	consensus 1-Acyl dihydroxyacetone phosphate reduct	99.56
COG2910	211	Putative NADH-flavin reductase [General function p	99.56
KOG4169	261	consensus 15-hydroxyprostaglandin dehydrogenase an	99.55
PF08659	181	KR: KR domain; InterPro: IPR013968 This domain is	99.55
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	99.51
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	99.48
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	99.47
KOG4039	238	consensus Serine/threonine kinase TIP30/CC3 [Signa	99.47
PRK12428	241	3-alpha-hydroxysteroid dehydrogenase; Provisional	99.45
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	99.44
PF13561	241	adh_short_C2: Enoyl-(Acyl carrier protein) reducta	99.42
KOG4288	283	consensus Predicted oxidoreductase [General functi	99.39
COG1090	297	Predicted nucleoside-diphosphate sugar epimerase [	99.39
KOG1221	467	consensus Acyl-CoA reductase [Lipid transport and	99.37
KOG1210	331	consensus Predicted 3-ketosphinganine reductase [S	99.36
PRK06720	169	hypothetical protein; Provisional	99.24
KOG1372	376	consensus GDP-mannose 4,6 dehydratase [Carbohydrat	99.21
KOG1431	315	consensus GDP-L-fucose synthetase [Carbohydrate tr	99.18
PRK08309	177	short chain dehydrogenase; Provisional	99.18
PTZ00325	321	malate dehydrogenase; Provisional	99.15
KOG1199	260	consensus Short-chain alcohol dehydrogenase/3-hydr	99.1
KOG2774	366	consensus NAD dependent epimerase [General functio	99.1
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	99.03
KOG1204	253	consensus Predicted dehydrogenase [Secondary metab	99.01
KOG1478	341	consensus 3-keto sterol reductase [Lipid transport	98.99
PLN00106	323	malate dehydrogenase	98.97
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	98.93
PRK09620	229	hypothetical protein; Provisional	98.88
PRK05086	312	malate dehydrogenase; Provisional	98.87
PRK13656	398	trans-2-enoyl-CoA reductase; Provisional	98.83
PRK06732	229	phosphopantothenate--cysteine ligase; Validated	98.79
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.74
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	98.6
TIGR00715	256	precor6x_red precorrin-6x reductase. This enzyme w	98.59
KOG2733	423	consensus Uncharacterized membrane protein [Functi	98.58
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	98.57
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	98.46
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	98.42
COG0623	259	FabI Enoyl-[acyl-carrier-protein]	98.38
TIGR00521	390	coaBC_dfp phosphopantothenoylcysteine decarboxylas	98.35
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.3
PRK12548	289	shikimate 5-dehydrogenase; Provisional	98.29
PRK14982	340	acyl-ACP reductase; Provisional	98.28
COG3268	382	Uncharacterized conserved protein [Function unknow	98.27
COG0569	225	TrkA K+ transport systems, NAD-binding component [	98.25
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	98.19
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	98.1
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	98.07
PF04127	185	DFP: DNA / pantothenate metabolism flavoprotein; I	98.07
KOG4022	236	consensus Dihydropteridine reductase DHPR/QDPR [Am	98.05
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.02
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	98.0
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.96
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	97.95
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	97.94
PRK09496	453	trkA potassium transporter peripheral membrane com	97.94
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.91
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.89
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.85
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	97.85
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.84
PRK05442	326	malate dehydrogenase; Provisional	97.82
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.8
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.8
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.78
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.77
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	97.75
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.73
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	97.72
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	97.67
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.66
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.65
PLN02383	344	aspartate semialdehyde dehydrogenase	97.63
COG4982	866	3-oxoacyl-[acyl-carrier protein]	97.61
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.61
PRK04148	134	hypothetical protein; Provisional	97.61
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.59
KOG1494	345	consensus NAD-dependent malate dehydrogenase [Ener	97.56
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.56
PRK09496	453	trkA potassium transporter peripheral membrane com	97.56
PTZ00117	319	malate dehydrogenase; Provisional	97.55
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	97.55
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	97.54
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	97.49
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	97.46
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.37
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.37
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.36
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.35
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	97.35
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	97.35
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	97.32
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	97.32
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	97.3
PRK06223	307	malate dehydrogenase; Reviewed	97.27
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.26
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	97.26
PRK08223	287	hypothetical protein; Validated	97.25
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.24
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.23
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.23
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	97.23
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.21
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	97.21
PRK08306	296	dipicolinate synthase subunit A; Reviewed	97.21
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.19
PRK03659	601	glutathione-regulated potassium-efflux system prot	97.19
PRK08655	437	prephenate dehydrogenase; Provisional	97.18
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	97.17
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.15
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	97.15
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.14
PRK08328	231	hypothetical protein; Provisional	97.14
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.14
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	97.14
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.13
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	97.13
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	97.13
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.13
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	97.12
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.12
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	97.12
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	97.12
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.12
PRK09288	395	purT phosphoribosylglycinamide formyltransferase 2	97.1
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.1
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	97.09
PRK13982	475	bifunctional SbtC-like/phosphopantothenoylcysteine	97.08
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.08
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.06
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	97.05
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.05
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	97.04
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	97.04
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.03
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.02
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.02
PRK15116	268	sulfur acceptor protein CsdL; Provisional	97.02
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.01
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.01
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	96.99
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.99
PRK08057	248	cobalt-precorrin-6x reductase; Reviewed	96.98
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.98
PLN02602	350	lactate dehydrogenase	96.97
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	96.97
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	96.96
PRK10669	558	putative cation:proton antiport protein; Provision	96.95
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.93
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	96.93
PLN02928	347	oxidoreductase family protein	96.93
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	96.93
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	96.92
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.92
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	96.9
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.89
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	96.88
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.88
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	96.87
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.86
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.85
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	96.85
COG0136	334	Asd Aspartate-semialdehyde dehydrogenase [Amino ac	96.84
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	96.83
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.82
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.82
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	96.81
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.81
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.81
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	96.81
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.81
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.79
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	96.78
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.76
cd05295	452	MDH_like Malate dehydrogenase-like. These MDH-like	96.74
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.74
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	96.73
TIGR01142	380	purT phosphoribosylglycinamide formyltransferase 2	96.72
PRK14851	679	hypothetical protein; Provisional	96.7
PRK06444	197	prephenate dehydrogenase; Provisional	96.69
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.69
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.68
COG0289	266	DapB Dihydrodipicolinate reductase [Amino acid tra	96.67
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	96.66
PTZ00075	476	Adenosylhomocysteinase; Provisional	96.64
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.63
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.62
PRK10537	393	voltage-gated potassium channel; Provisional	96.62
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.61
PRK08818	370	prephenate dehydrogenase; Provisional	96.61
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.61
PLN02353	473	probable UDP-glucose 6-dehydrogenase	96.6
PRK06849	389	hypothetical protein; Provisional	96.59
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.59
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.58
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.58
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	96.57
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.55
TIGR01745	366	asd_gamma aspartate-semialdehyde dehydrogenase, ga	96.54
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.53
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	96.52
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.51
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.51
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.51
PLN00203	519	glutamyl-tRNA reductase	96.5
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	96.5
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.49
PRK14852	989	hypothetical protein; Provisional	96.49
PRK13243	333	glyoxylate reductase; Reviewed	96.48
PLN02256	304	arogenate dehydrogenase	96.48
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.47
PLN02948	577	phosphoribosylaminoimidazole carboxylase	96.46
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	96.45
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	96.45
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.42
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.41
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.41
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.41
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.38
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.37
PRK07411	390	hypothetical protein; Validated	96.37
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	96.37
PRK12480	330	D-lactate dehydrogenase; Provisional	96.36
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.36
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.36
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.36

>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]

Probab=99.94  E-value=1.1e-26  Score=182.57  Aligned_cols=138  Identities=25%  Similarity=0.392  Sum_probs=117.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccC--
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGF--  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~--  132 (202)
                      |+||||||+|+||+|.+.+|++.|++|++++.-.............+++++|+.|.+.++++|+  .+|.|||+||..  
T Consensus         1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~v~~~~~~f~~gDi~D~~~L~~vf~~~~idaViHFAa~~~V   80 (329)
T COG1087           1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISV   80 (329)
T ss_pred             CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHHhhhccCceEEeccccHHHHHHHHHhcCCCEEEECcccccc
Confidence            5899999999999999999999999999998653332221111127999999999999999997  599999999953  


Q ss_pred             ----CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          133 ----GSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ----~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                          ..+...|+.|+.|+++|+++|++.++++|||-|| ++||.+.          .|.+|||.||++.|++++.++
T Consensus        81 gESv~~Pl~Yy~NNv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~~PI~E~~~~~p~NPYG~sKlm~E~iL~d~~  157 (329)
T COG1087          81 GESVQNPLKYYDNNVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTTSPISETSPLAPINPYGRSKLMSEEILRDAA  157 (329)
T ss_pred             chhhhCHHHHHhhchHhHHHHHHHHHHhCCCEEEEecchhhcCCCCCcccCCCCCCCCCCcchhHHHHHHHHHHHHH
Confidence                3567889999999999999999999999999999 7898653          356899999999999999864

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=99.93  E-value=2.4e-25  Score=178.59  Aligned_cols=143  Identities=24%  Similarity=0.282  Sum_probs=118.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      .+++|+||||+||||+|++++||++||.|++++|++.+...       ...+.+.+.+.+|++|++++++++++||.|||
T Consensus         5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH   84 (327)
T KOG1502|consen    5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFH   84 (327)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEE
Confidence            57899999999999999999999999999999999876211       12245699999999999999999999999999


Q ss_pred             ccccCCCC-----ccchhhhHHHHHHHHHHHHHcC-CCEEEEEec-c-ccCc-CCc---------C----------Ccch
Q 028890          128 CVGGFGSN-----SYMYKINGTANINAIRAASEKG-VKRFVYISA-A-DFGV-ANY---------L----------LQGY  179 (202)
Q Consensus       128 ~a~~~~~~-----~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS-~-~~~~-~~~---------~----------~~~Y  179 (202)
                      .|.+....     ....++.+.|+.|++++|++.. ++|+||+|| + .... +..         .          ...|
T Consensus        85 ~Asp~~~~~~~~e~~li~pav~Gt~nVL~ac~~~~sVkrvV~TSS~aAv~~~~~~~~~~~vvdE~~wsd~~~~~~~~~~Y  164 (327)
T KOG1502|consen   85 TASPVDFDLEDPEKELIDPAVKGTKNVLEACKKTKSVKRVVYTSSTAAVRYNGPNIGENSVVDEESWSDLDFCRCKKLWY  164 (327)
T ss_pred             eCccCCCCCCCcHHhhhhHHHHHHHHHHHHHhccCCcceEEEeccHHHhccCCcCCCCCcccccccCCcHHHHHhhHHHH
Confidence            99986642     2578899999999999999988 999999999 3 2221 110         1          1369


Q ss_pred             HHHHHHHHHHHHHhcccC
Q 028890          180 YEGKVLSSDVAACQSVLG  197 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~~l~  197 (202)
                      ..+|..+|+..++|+..+
T Consensus       165 ~~sK~lAEkaAw~fa~e~  182 (327)
T KOG1502|consen  165 ALSKTLAEKAAWEFAKEN  182 (327)
T ss_pred             HHHHHHHHHHHHHHHHhC
Confidence            999999999999987544

>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones

Probab=99.93  E-value=2.7e-25  Score=178.64  Aligned_cols=136  Identities=34%  Similarity=0.465  Sum_probs=111.6

Q ss_pred             EEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccc-ccCCCc-eeEEEccCCCHhhHHHHhcCccEeEEccccCCC-
Q 028890           60 LVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR-DSWANN-VIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS-  134 (202)
Q Consensus        60 lVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~-~~~~~~-~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~-  134 (202)
                      |||||+||+|++|+++|+++|  ++|.++++....... .....+ .+++++|++|++++.++++++|+|||+|++... 
T Consensus         1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~H~Aa~~~~~   80 (280)
T PF01073_consen    1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVFHTAAPVPPW   80 (280)
T ss_pred             CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEEEeCcccccc
Confidence            699999999999999999999  799999987655331 122223 349999999999999999999999999986432 


Q ss_pred             ----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc---C-------------CcCCcchHHHHHHHHHHHHHh
Q 028890          135 ----NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV---A-------------NYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       135 ----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~---~-------------~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                          .+..+++|+.|+.+++++|++.++++|||+|| ++++.   .             ..+...|+.||..+|++++++
T Consensus        81 ~~~~~~~~~~vNV~GT~nvl~aa~~~~VkrlVytSS~~vv~~~~~~~~~~~~dE~~~~~~~~~~~Y~~SK~~AE~~V~~a  160 (280)
T PF01073_consen   81 GDYPPEEYYKVNVDGTRNVLEAARKAGVKRLVYTSSISVVFDNYKGDPIINGDEDTPYPSSPLDPYAESKALAEKAVLEA  160 (280)
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCcceeEeccCCCCcccCCcCCcccccccCchHHHHHHHHHHHHhh
Confidence                34578999999999999999999999999999 44432   0             113457999999999999987


Q ss_pred             cc
Q 028890          194 SV  195 (202)
Q Consensus       194 ~~  195 (202)
                      ..
T Consensus       161 ~~  162 (280)
T PF01073_consen  161 NG  162 (280)
T ss_pred             cc
Confidence            65

3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process

>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional

Probab=99.93  E-value=7.1e-25  Score=181.43  Aligned_cols=141  Identities=21%  Similarity=0.204  Sum_probs=116.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----------ccCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----------~~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      +++|+|+||||+||||++|+++|+++|++|++++|.......          .....++.++.+|+.|.+.+.++++++|
T Consensus        13 ~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d   92 (348)
T PRK15181         13 LAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVD   92 (348)
T ss_pred             ccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCC
Confidence            467899999999999999999999999999999986432110          0111367899999999999999999999


Q ss_pred             EeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHH
Q 028890          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLS  186 (202)
Q Consensus       124 ~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~  186 (202)
                      +|||+|+...      ++...+++|+.|+.+++++|++.++++|||+|| .+||...          .+.++|+.+|.++
T Consensus        93 ~ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~v~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~  172 (348)
T PRK15181         93 YVLHQAALGSVPRSLKDPIATNSANIDGFLNMLTAARDAHVSSFTYAASSSTYGDHPDLPKIEERIGRPLSPYAVTKYVN  172 (348)
T ss_pred             EEEECccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeechHhhCCCCCCCCCCCCCCCCCChhhHHHHHH
Confidence            9999998543      234568899999999999999999999999999 6787422          2456899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+++.|.
T Consensus       173 e~~~~~~~  180 (348)
T PRK15181        173 ELYADVFA  180 (348)
T ss_pred             HHHHHHHH
Confidence            99988764

>PLN02214 cinnamoyl-CoA reductase

Probab=99.92  E-value=8.2e-24  Score=174.73  Aligned_cols=141  Identities=25%  Similarity=0.307  Sum_probs=116.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----ccc--CCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDS--WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      .++++|+||||+||||++++++|+++|++|++++|+.+...    ...  ...+++++.+|+.|++++.++++++|+|||
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   87 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFH   87 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEE
Confidence            46789999999999999999999999999999999754311    011  123588999999999999999999999999


Q ss_pred             ccccCC-CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-c-ccCcCC-------------------cCCcchHHHHHH
Q 028890          128 CVGGFG-SNSYMYKINGTANINAIRAASEKGVKRFVYISA-A-DFGVAN-------------------YLLQGYYEGKVL  185 (202)
Q Consensus       128 ~a~~~~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~-~~~~~~-------------------~~~~~Y~~sK~~  185 (202)
                      +|+... ++...+++|+.++.+++++|++.++++||++|| . .|+.+.                   .+.++|+.+|.+
T Consensus        88 ~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS~~avyg~~~~~~~~~~~E~~~~~~~~~~~p~~~Y~~sK~~  167 (342)
T PLN02214         88 TASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSSIGAVYMDPNRDPEAVVDESCWSDLDFCKNTKNWYCYGKMV  167 (342)
T ss_pred             ecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeccceeeeccCCCCCCcccCcccCCChhhccccccHHHHHHHH
Confidence            999753 346678899999999999999999999999999 3 565311                   023579999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      +|++++.|.
T Consensus       168 aE~~~~~~~  176 (342)
T PLN02214        168 AEQAAWETA  176 (342)
T ss_pred             HHHHHHHHH
Confidence            999998874

>PLN00198 anthocyanidin reductase; Provisional

Probab=99.91  E-value=1.3e-23  Score=173.11  Aligned_cols=143  Identities=20%  Similarity=0.266  Sum_probs=114.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----cc-CCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DS-WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +.++++|+||||+||||++|+++|+++|++|+++.|+......     .. ..++++++.+|++|++.+.++++++|+||
T Consensus         6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi   85 (338)
T PLN00198          6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAHLRALQELGDLKIFGADLTDEESFEAPIAGCDLVF   85 (338)
T ss_pred             CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHhcCCCCceEEEEcCCCChHHHHHHHhcCCEEE
Confidence            4467899999999999999999999999999998887643210     11 11368899999999999999999999999


Q ss_pred             EccccCCC----C-ccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcC-----------------------CcCC
Q 028890          127 SCVGGFGS----N-SYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVA-----------------------NYLL  176 (202)
Q Consensus       127 ~~a~~~~~----~-~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~~~-----------------------~~~~  176 (202)
                      |+|+....    + ...+++|+.++.++++++.+. ++++|||+|| ++|+..                       ..+.
T Consensus        86 h~A~~~~~~~~~~~~~~~~~nv~g~~~ll~a~~~~~~~~~~v~~SS~~~~g~~~~~~~~~~~~E~~~~~~~~~~~~~~p~  165 (338)
T PLN00198         86 HVATPVNFASEDPENDMIKPAIQGVHNVLKACAKAKSVKRVILTSSAAAVSINKLSGTGLVMNEKNWTDVEFLTSEKPPT  165 (338)
T ss_pred             EeCCCCccCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeecceeeeccCCCCCCceeccccCCchhhhhhcCCcc
Confidence            99996431    1 134688999999999999886 5889999999 566521                       1235


Q ss_pred             cchHHHHHHHHHHHHHhcc
Q 028890          177 QGYYEGKVLSSDVAACQSV  195 (202)
Q Consensus       177 ~~Y~~sK~~~E~~~~~~~~  195 (202)
                      ++|+.||.++|.+++.|..
T Consensus       166 ~~Y~~sK~~~E~~~~~~~~  184 (338)
T PLN00198        166 WGYPASKTLAEKAAWKFAE  184 (338)
T ss_pred             chhHHHHHHHHHHHHHHHH
Confidence            5799999999999998753

>PLN02427 UDP-apiose/xylose synthase

Probab=99.91  E-value=1.7e-23  Score=175.42  Aligned_cols=142  Identities=17%  Similarity=0.245  Sum_probs=113.3

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCccc---c---cCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLR---D---SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~---~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      .+.+.|+|+||||+||||++|+++|+++ |++|++++|+..+...   .   .+..+++++.+|+.|.+.+.++++++|+
T Consensus        10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~   89 (386)
T PLN02427         10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADL   89 (386)
T ss_pred             CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCE
Confidence            3456689999999999999999999998 5999999987543111   0   1234799999999999999999999999


Q ss_pred             eEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC------------------------
Q 028890          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN------------------------  173 (202)
Q Consensus       125 vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~------------------------  173 (202)
                      |||+|+...      .+...+..|+.++.+++++|++.+ ++|||+|| .+||...                        
T Consensus        90 ViHlAa~~~~~~~~~~~~~~~~~n~~gt~~ll~aa~~~~-~r~v~~SS~~vYg~~~~~~~~e~~p~~~~~~~~~~~e~~~  168 (386)
T PLN02427         90 TINLAAICTPADYNTRPLDTIYSNFIDALPVVKYCSENN-KRLIHFSTCEVYGKTIGSFLPKDHPLRQDPAFYVLKEDES  168 (386)
T ss_pred             EEEcccccChhhhhhChHHHHHHHHHHHHHHHHHHHhcC-CEEEEEeeeeeeCCCcCCCCCccccccccccccccccccc
Confidence            999998533      123456789999999999998887 89999999 6776421                        


Q ss_pred             --------cCCcchHHHHHHHHHHHHHhc
Q 028890          174 --------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 --------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                              .+.+.|+.+|.++|++++.|.
T Consensus       169 ~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  197 (386)
T PLN02427        169 PCIFGSIEKQRWSYACAKQLIERLIYAEG  197 (386)
T ss_pred             ccccCCCCccccchHHHHHHHHHHHHHHH
Confidence                    012469999999999998764

>PLN02572 UDP-sulfoquinovose synthase

Probab=99.91  E-value=2.6e-23  Score=176.91  Aligned_cols=142  Identities=19%  Similarity=0.235  Sum_probs=111.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------c----------------ccCCCceeEEEccCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------R----------------DSWANNVIWHQGNLL  110 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~----------------~~~~~~~~~~~~D~~  110 (202)
                      ..++|+|+||||+||||++|+++|+++|++|++++|......      .                .....+++++.+|+.
T Consensus        44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl~  123 (442)
T PLN02572         44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDIC  123 (442)
T ss_pred             cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCCC
Confidence            457889999999999999999999999999999875321100      0                001136889999999


Q ss_pred             CHhhHHHHhc--CccEeEEccccCCCC---------ccchhhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcC-----
Q 028890          111 SSDSWKEALD--GVTAVISCVGGFGSN---------SYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVA-----  172 (202)
Q Consensus       111 ~~~~~~~~~~--~~d~vi~~a~~~~~~---------~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS-~~~~~~-----  172 (202)
                      |++.+.++++  ++|+|||+|+.....         ...+++|+.|+.+++++|++.+++ +||++|| .+||..     
T Consensus       124 d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~~  203 (442)
T PLN02572        124 DFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDIE  203 (442)
T ss_pred             CHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCCc
Confidence            9999999998  489999999753311         234578999999999999999885 8999999 678742     


Q ss_pred             ------------------CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 ------------------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ------------------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                                        ..+.++|+.+|.++|.+++.|.
T Consensus       204 E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~  243 (442)
T PLN02572        204 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTC  243 (442)
T ss_pred             ccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHH
Confidence                              1234689999999999998874

>PLN02695 GDP-D-mannose-3',5'-epimerase

Probab=99.90  E-value=6.3e-23  Score=171.11  Aligned_cols=147  Identities=20%  Similarity=0.258  Sum_probs=116.8

Q ss_pred             ccCCCCCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           47 ETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        47 ~~~~~~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +.....+.++|+|+||||+||||+++++.|+++||+|++++|........ .....+++.+|+.|.+.+..+++++|+||
T Consensus        12 ~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vi   90 (370)
T PLN02695         12 EREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSE-DMFCHEFHLVDLRVMENCLKVTKGVDHVF   90 (370)
T ss_pred             CCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecccccccc-ccccceEEECCCCCHHHHHHHHhCCCEEE
Confidence            34444556789999999999999999999999999999999864321111 11235788999999999998889999999


Q ss_pred             EccccCC-------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------------CcCCcchHHH
Q 028890          127 SCVGGFG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------------NYLLQGYYEG  182 (202)
Q Consensus       127 ~~a~~~~-------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------------~~~~~~Y~~s  182 (202)
                      |+|+...       .+...+..|+.++.+++++|++.++++|||+|| .+|+..                ..+.+.|+.+
T Consensus        91 h~Aa~~~~~~~~~~~~~~~~~~N~~~t~nll~aa~~~~vk~~V~~SS~~vYg~~~~~~~~~~~~E~~~~p~~p~s~Yg~s  170 (370)
T PLN02695         91 NLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLE  170 (370)
T ss_pred             EcccccCCccccccCchhhHHHHHHHHHHHHHHHHHhCCCEEEEeCchhhcCCccccCcCCCcCcccCCCCCCCCHHHHH
Confidence            9998542       223456789999999999999999999999999 567631                1244689999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.++|++++.|.
T Consensus       171 K~~~E~~~~~~~  182 (370)
T PLN02695        171 KLATEELCKHYT  182 (370)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>TIGR01472 gmd GDP-mannose 4,6-dehydratase

Probab=99.90  E-value=4.2e-23  Score=170.41  Aligned_cols=138  Identities=20%  Similarity=0.264  Sum_probs=111.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc----cccc-------CCCceeEEEccCCCHhhHHHHhcC--cc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDS-------WANNVIWHQGNLLSSDSWKEALDG--VT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~----~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~--~d  123 (202)
                      |+|+||||+||||++++++|+++|++|++++|+....    ....       ...+++++.+|++|.+.+.+++++  +|
T Consensus         1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d   80 (343)
T TIGR01472         1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDEIKPT   80 (343)
T ss_pred             CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHhCCCC
Confidence            5899999999999999999999999999999875421    1110       024689999999999999999985  69


Q ss_pred             EeEEccccCCC------CccchhhhHHHHHHHHHHHHHcCCC---EEEEEec-cccCcC----------CcCCcchHHHH
Q 028890          124 AVISCVGGFGS------NSYMYKINGTANINAIRAASEKGVK---RFVYISA-ADFGVA----------NYLLQGYYEGK  183 (202)
Q Consensus       124 ~vi~~a~~~~~------~~~~~~~n~~~~~~~~~~~~~~~~~---~~v~~SS-~~~~~~----------~~~~~~Y~~sK  183 (202)
                      +|||+|+....      +...+++|+.|+.+++++|++.+++   +|||+|| .+||..          ..+.++|+.||
T Consensus        81 ~ViH~Aa~~~~~~~~~~~~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK  160 (343)
T TIGR01472        81 EIYNLAAQSHVKVSFEIPEYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNETTPFYPRSPYAAAK  160 (343)
T ss_pred             EEEECCcccccchhhhChHHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCCCCCCCCCChhHHHH
Confidence            99999996432      2345577899999999999988764   8999999 677742          12457899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .++|.+++.|.
T Consensus       161 ~~~e~~~~~~~  171 (343)
T TIGR01472       161 LYAHWITVNYR  171 (343)
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=99.90  E-value=6.3e-23  Score=169.62  Aligned_cols=138  Identities=19%  Similarity=0.253  Sum_probs=110.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCC-CHhhHHHHhcCccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      ||+|+||||+||||++|+++|+++ |++|++++|+...........+++++.+|+. +.+.+.++++++|+|||+|+...
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~aa~~~   80 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPLVAIAT   80 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEECcccCC
Confidence            468999999999999999999987 7999999986543211112246899999998 77788888999999999998532


Q ss_pred             ------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchHHHHHHHHHH
Q 028890          134 ------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       134 ------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------------~~~~~Y~~sK~~~E~~  189 (202)
                            ++...+++|+.++++++++|++.+ ++|||+|| .+||...                 .+.+.|+.+|.++|++
T Consensus        81 ~~~~~~~p~~~~~~n~~~~~~ll~aa~~~~-~~~v~~SS~~vyg~~~~~~~~ee~~~~~~~~~~~p~~~Y~~sK~~~e~~  159 (347)
T PRK11908         81 PATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCPDEEFDPEASPLVYGPINKPRWIYACSKQLMDRV  159 (347)
T ss_pred             hHHhhcCcHHHHHHHHHHHHHHHHHHHhcC-CeEEEEecceeeccCCCcCcCccccccccCcCCCccchHHHHHHHHHHH
Confidence                  345567899999999999999987 79999999 6676321                 1234799999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.|.
T Consensus       160 ~~~~~  164 (347)
T PRK11908        160 IWAYG  164 (347)
T ss_pred             HHHHH
Confidence            98764

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=99.90  E-value=8.8e-23  Score=166.80  Aligned_cols=140  Identities=21%  Similarity=0.279  Sum_probs=112.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cc-----cCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RD-----SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ++++|+||||+||||++++++|+++|++|++++|+.....  ..     ....+++++.+|+.|++.+.++++++|+|||
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            4679999999999999999999999999999998754311  00     1124789999999999999999999999999


Q ss_pred             ccccCC----CCc-cchhhhHHHHHHHHHHHHHc-CCCEEEEEec-c--ccCcCC-------------cC------Ccch
Q 028890          128 CVGGFG----SNS-YMYKINGTANINAIRAASEK-GVKRFVYISA-A--DFGVAN-------------YL------LQGY  179 (202)
Q Consensus       128 ~a~~~~----~~~-~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~--~~~~~~-------------~~------~~~Y  179 (202)
                      +|+...    .+. ..+++|+.++.+++++|++. ++++|||+|| +  .|+...             .+      .+.|
T Consensus        83 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~~v~~SS~~~~~y~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y  162 (322)
T PLN02662         83 TASPFYHDVTDPQAELIDPAVKGTLNVLRSCAKVPSVKRVVVTSSMAAVAYNGKPLTPDVVVDETWFSDPAFCEESKLWY  162 (322)
T ss_pred             eCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEccCHHHhcCCCcCCCCCCcCCcccCCChhHhhcccchH
Confidence            999643    222 56789999999999999887 8899999999 3  354211             01      1479


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.++|++++.|.
T Consensus       163 ~~sK~~~E~~~~~~~  177 (322)
T PLN02662        163 VLSKTLAEEAAWKFA  177 (322)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=99.89  E-value=1.3e-22  Score=168.23  Aligned_cols=142  Identities=20%  Similarity=0.285  Sum_probs=111.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c-cCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      .+.+|+|+||||+||||++++++|+++|++|++++|+......   . ....+++++.+|+.|.+.+.++++++|+|||+
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~   86 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHV   86 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEEC
Confidence            3567899999999999999999999999999999987543211   0 11246889999999999999999999999999


Q ss_pred             cccCCC--------Ccc-----chhhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcCC--------------c-----
Q 028890          129 VGGFGS--------NSY-----MYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVAN--------------Y-----  174 (202)
Q Consensus       129 a~~~~~--------~~~-----~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS-~~~~~~~--------------~-----  174 (202)
                      |+....        +..     .++.|+.++.+++++|++.+ +++||++|| ++|+...              .     
T Consensus        87 A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~~~~~~E~~~~p~~~~  166 (353)
T PLN02896         87 AASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVKRVVFTSSISTLTAKDSNGRWRAVVDETCQTPIDHV  166 (353)
T ss_pred             CccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCccEEEEEechhhccccccCCCCCCccCcccCCcHHHh
Confidence            996431        111     23445689999999998875 789999999 6776211              0     


Q ss_pred             -----CCcchHHHHHHHHHHHHHhc
Q 028890          175 -----LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       175 -----~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           +.++|+.||.++|++++.|.
T Consensus       167 ~~~~~~~~~Y~~sK~~~E~~~~~~~  191 (353)
T PLN02896        167 WNTKASGWVYVLSKLLTEEAAFKYA  191 (353)
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHH
Confidence                 12379999999999998875

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=99.89  E-value=1.6e-22  Score=165.87  Aligned_cols=136  Identities=22%  Similarity=0.231  Sum_probs=112.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcc---cccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL---RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ++|+|+||||+|+||++++++|+++|  ++|++++|+.....   ......+++++.+|++|++.+.++++++|+|||+|
T Consensus         3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~~~~iD~Vih~A   82 (324)
T TIGR03589         3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTRALRGVDYVVHAA   82 (324)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHhcCCEEEECc
Confidence            56899999999999999999999986  78999988754311   01112468899999999999999999999999999


Q ss_pred             ccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          130 GGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       130 ~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |...      ++...+++|+.|+.+++++|.+.++++||++||.   .+..+.++|+.+|.++|++++.+
T Consensus        83 g~~~~~~~~~~~~~~~~~Nv~g~~~ll~aa~~~~~~~iV~~SS~---~~~~p~~~Y~~sK~~~E~l~~~~  149 (324)
T TIGR03589        83 ALKQVPAAEYNPFECIRTNINGAQNVIDAAIDNGVKRVVALSTD---KAANPINLYGATKLASDKLFVAA  149 (324)
T ss_pred             ccCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCC---CCCCCCCHHHHHHHHHHHHHHHH
Confidence            9643      2235778999999999999999998999999993   23345678999999999998764

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PLN02650 dihydroflavonol-4-reductase

Probab=99.89  E-value=1.7e-22  Score=167.30  Aligned_cols=140  Identities=22%  Similarity=0.322  Sum_probs=111.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--c-----cCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D-----SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~-----~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ..++|+||||+||||++++++|+++|++|++++|+......  .     ....+++++.+|+.|.+.+.++++++|+|||
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH   83 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFH   83 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEE
Confidence            46799999999999999999999999999999987543211  0     0113578999999999999999999999999


Q ss_pred             ccccCC----CC-ccchhhhHHHHHHHHHHHHHcC-CCEEEEEecc-ccCcC--------Cc-------------CCcch
Q 028890          128 CVGGFG----SN-SYMYKINGTANINAIRAASEKG-VKRFVYISAA-DFGVA--------NY-------------LLQGY  179 (202)
Q Consensus       128 ~a~~~~----~~-~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~-~~~~~--------~~-------------~~~~Y  179 (202)
                      +|+...    ++ ...+++|+.++.+++++|.+.+ +++|||+||. .++..        ..             +.++|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~r~v~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y  163 (351)
T PLN02650         84 VATPMDFESKDPENEVIKPTVNGMLSIMKACAKAKTVRRIVFTSSAGTVNVEEHQKPVYDEDCWSDLDFCRRKKMTGWMY  163 (351)
T ss_pred             eCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHhcCCceEEEEecchhhcccCCCCCCccCcccCCchhhhhccccccchH
Confidence            998643    12 2577899999999999999876 7899999993 44321        00             12479


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.||.++|.+++.|.
T Consensus       164 ~~sK~~~E~~~~~~~  178 (351)
T PLN02650        164 FVSKTLAEKAAWKYA  178 (351)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998875

>CHL00194 ycf39 Ycf39; Provisional

Probab=99.89  E-value=1.7e-22  Score=165.24  Aligned_cols=134  Identities=25%  Similarity=0.276  Sum_probs=111.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC-CC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-SN  135 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~-~~  135 (202)
                      |+|+||||||++|++++++|+++||+|++++|+..+. ......+++++.+|+.|++++.++++++|+|||+++... ++
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~~~~~~~   79 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDASTSRPSDL   79 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCCCCCCCc
Confidence            5899999999999999999999999999999986432 111234789999999999999999999999999987532 33


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          136 SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ...+++|+.++.+++++|++.++++||++||.  +....+..+|..+|..+|++++.+
T Consensus        80 ~~~~~~~~~~~~~l~~aa~~~gvkr~I~~Ss~--~~~~~~~~~~~~~K~~~e~~l~~~  135 (317)
T CHL00194         80 YNAKQIDWDGKLALIEAAKAAKIKRFIFFSIL--NAEQYPYIPLMKLKSDIEQKLKKS  135 (317)
T ss_pred             cchhhhhHHHHHHHHHHHHHcCCCEEEEeccc--cccccCCChHHHHHHHHHHHHHHc
Confidence            45778899999999999999999999999983  222334567999999999998864

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=99.89  E-value=2.4e-22  Score=164.51  Aligned_cols=140  Identities=22%  Similarity=0.266  Sum_probs=112.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cc-----cCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RD-----SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~-----~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      .+++|+||||+||||++++++|+++|++|+++.|+.....  ..     ....+++++.+|+.|++.+.++++++|+|||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih   83 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFH   83 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEE
Confidence            4689999999999999999999999999999998765311  10     1124689999999999999999999999999


Q ss_pred             ccccCC----CC-ccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cc--cCcCC-------------------cCCcch
Q 028890          128 CVGGFG----SN-SYMYKINGTANINAIRAASEK-GVKRFVYISA-AD--FGVAN-------------------YLLQGY  179 (202)
Q Consensus       128 ~a~~~~----~~-~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~--~~~~~-------------------~~~~~Y  179 (202)
                      +|+...    ++ ...+++|+.++.+++++|++. +++|||++|| ..  |+...                   .+.+.|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~rvV~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~Y  163 (322)
T PLN02986         84 TASPVFFTVKDPQTELIDPALKGTINVLNTCKETPSVKRVILTSSTAAVLFRQPPIEANDVVDETFFSDPSLCRETKNWY  163 (322)
T ss_pred             eCCCcCCCCCCchhhhhHHHHHHHHHHHHHHHhcCCccEEEEecchhheecCCccCCCCCCcCcccCCChHHhhccccch
Confidence            999642    12 245789999999999999885 6899999999 33  33211                   123679


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.++|.+++.|.
T Consensus       164 ~~sK~~aE~~~~~~~  178 (322)
T PLN02986        164 PLSKILAENAAWEFA  178 (322)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998874

>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.89  E-value=9.9e-23  Score=172.06  Aligned_cols=140  Identities=24%  Similarity=0.270  Sum_probs=122.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcc------ccc-CCCceeEEEccCCCHhhHHHHhcC--c
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL------RDS-WANNVIWHQGNLLSSDSWKEALDG--V  122 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~------~~~-~~~~~~~~~~D~~~~~~~~~~~~~--~  122 (202)
                      ..++|+|+||||+|.||+.+|+++++.+ .+++.++|++.+..      ... ...++.++.+|+.|.+.+.+++++  +
T Consensus       247 ~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~kv  326 (588)
T COG1086         247 MLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGHKV  326 (588)
T ss_pred             HcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcCCC
Confidence            4578999999999999999999999986 48888999875421      111 136788999999999999999998  9


Q ss_pred             cEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhcc
Q 028890          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSV  195 (202)
Q Consensus       123 d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~  195 (202)
                      |+|||+|+..+      .+.+.+++|+.|+.|++++|.++++++||++||   +...+|.+.||++|.++|.++.+++.
T Consensus       327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~~~V~iST---DKAV~PtNvmGaTKr~aE~~~~a~~~  402 (588)
T COG1086         327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVKKFVLIST---DKAVNPTNVMGATKRLAEKLFQAANR  402 (588)
T ss_pred             ceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCCEEEEEec---CcccCCchHhhHHHHHHHHHHHHHhh
Confidence            99999999765      457788999999999999999999999999999   77788899999999999999998865

>PLN02653 GDP-mannose 4,6-dehydratase

Probab=99.89  E-value=3.2e-22  Score=164.96  Aligned_cols=141  Identities=19%  Similarity=0.227  Sum_probs=113.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC----ccccc------CCCceeEEEccCCCHhhHHHHhcC--
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS----SLRDS------WANNVIWHQGNLLSSDSWKEALDG--  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~----~~~~~------~~~~~~~~~~D~~~~~~~~~~~~~--  121 (202)
                      .++++|+||||+||||++++++|+++|++|++++|+...    .....      ...++.++.+|+.|.+++.++++.  
T Consensus         4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~   83 (340)
T PLN02653          4 PPRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLDDIK   83 (340)
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHHHcC
Confidence            467899999999999999999999999999999987532    11111      124588999999999999988874  


Q ss_pred             ccEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCC-----EEEEEec-cccCcCC---------cCCcchH
Q 028890          122 VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK-----RFVYISA-ADFGVAN---------YLLQGYY  180 (202)
Q Consensus       122 ~d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~v~~SS-~~~~~~~---------~~~~~Y~  180 (202)
                      +|+|||||+...      .+...+++|+.++.+++++|++.+++     +||++|| .+||...         .+.+.|+
T Consensus        84 ~d~Vih~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~E~~~~~p~~~Y~  163 (340)
T PLN02653         84 PDEVYNLAAQSHVAVSFEMPDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPPQSETTPFHPRSPYA  163 (340)
T ss_pred             CCEEEECCcccchhhhhhChhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCCCCCCCCCCCCChhH
Confidence            699999999643      23445688999999999999988865     8999998 6777532         2456899


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .||.++|.+++.|.
T Consensus       164 ~sK~~~e~~~~~~~  177 (340)
T PLN02653        164 VAKVAAHWYTVNYR  177 (340)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998774

>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated

Probab=99.89  E-value=2.1e-22  Score=179.15  Aligned_cols=140  Identities=19%  Similarity=0.233  Sum_probs=112.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhh-HHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS-WKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~d~vi~~a~~  131 (202)
                      +++|+|+||||+||||++|+++|+++ |++|++++|............+++++.+|++|.+. +.++++++|+|||+|+.
T Consensus       313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~ViHlAa~  392 (660)
T PRK08125        313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVLPLVAI  392 (660)
T ss_pred             hcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEEECccc
Confidence            35789999999999999999999986 79999999876432222223478999999998655 57788899999999985


Q ss_pred             CC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchHHHHHHHH
Q 028890          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKVLSS  187 (202)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------------~~~~~Y~~sK~~~E  187 (202)
                      ..      .+...+++|+.++.+++++|++.+ ++|||+|| .+||...                 .+.+.|+.+|.++|
T Consensus       393 ~~~~~~~~~~~~~~~~Nv~~t~~ll~a~~~~~-~~~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~s~Yg~sK~~~E  471 (660)
T PRK08125        393 ATPIEYTRNPLRVFELDFEENLKIIRYCVKYN-KRIIFPSTSEVYGMCTDKYFDEDTSNLIVGPINKQRWIYSVSKQLLD  471 (660)
T ss_pred             cCchhhccCHHHHHHhhHHHHHHHHHHHHhcC-CeEEEEcchhhcCCCCCCCcCccccccccCCCCCCccchHHHHHHHH
Confidence            43      223567899999999999999988 89999999 6776321                 12246999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      ++++.|.
T Consensus       472 ~~~~~~~  478 (660)
T PRK08125        472 RVIWAYG  478 (660)
T ss_pred             HHHHHHH
Confidence            9999875

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=99.88  E-value=6.1e-22  Score=163.90  Aligned_cols=141  Identities=21%  Similarity=0.167  Sum_probs=113.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc----cCCCceeEEEccCCCHhhHHHHhcC--ccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDG--VTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~  127 (202)
                      +++|+|+||||+||||+++++.|+++|++|++++|+.......    ....++.++.+|++|.+++.+++++  +|+|||
T Consensus         2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vih   81 (349)
T TIGR02622         2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNLFELLNLAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFH   81 (349)
T ss_pred             cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhHHHHHhhcCCceEEEccCCCHHHHHHHHhhcCCCEEEE
Confidence            3578999999999999999999999999999999876542110    1123577899999999999998885  699999


Q ss_pred             ccccCC------CCccchhhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcC-----------CcCCcchHHHHHHHHH
Q 028890          128 CVGGFG------SNSYMYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVA-----------NYLLQGYYEGKVLSSD  188 (202)
Q Consensus       128 ~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS-~~~~~~-----------~~~~~~Y~~sK~~~E~  188 (202)
                      +|+...      ++...+++|+.++.++++++++.+ +++||++|| .+|+..           ..+.++|+.+|.++|.
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~N~~g~~~ll~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~  161 (349)
T TIGR02622        82 LAAQPLVRKSYADPLETFETNVMGTVNLLEAIRAIGSVKAVVNVTSDKCYRNDEWVWGYRETDPLGGHDPYSSSKACAEL  161 (349)
T ss_pred             CCcccccccchhCHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEechhhhCCCCCCCCCccCCCCCCCCcchhHHHHHHH
Confidence            998532      334577899999999999998876 789999999 566532           1345789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       162 ~~~~~~  167 (349)
T TIGR02622       162 VIASYR  167 (349)
T ss_pred             HHHHHH
Confidence            998763

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.88  E-value=7.9e-22  Score=160.17  Aligned_cols=136  Identities=27%  Similarity=0.318  Sum_probs=112.2

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCc-cEeEEccccCCCCc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGV-TAVISCVGGFGSNS  136 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~-d~vi~~a~~~~~~~  136 (202)
                      +|+||||+||||++|+++|+++|++|++++|.........  .++.++.+|+.|.+.+.+.++.+ |+|||+|+....+.
T Consensus         2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa~~~~~~   79 (314)
T COG0451           2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--SGVEFVVLDLTDRDLVDELAKGVPDAVIHLAAQSSVPD   79 (314)
T ss_pred             eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccc--cccceeeecccchHHHHHHHhcCCCEEEEccccCchhh
Confidence            4999999999999999999999999999999766533222  67899999999998888888888 99999999764221


Q ss_pred             -------cchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC------------CcCCcchHHHHHHHHHHHHHhcc
Q 028890          137 -------YMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA------------NYLLQGYYEGKVLSSDVAACQSV  195 (202)
Q Consensus       137 -------~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~------------~~~~~~Y~~sK~~~E~~~~~~~~  195 (202)
                             ..+.+|+.++.+++++|++.++++|||.|| +.++..            ..+.++|+.+|.++|++++.+..
T Consensus        80 ~~~~~~~~~~~~nv~gt~~ll~aa~~~~~~~~v~~ss~~~~~~~~~~~~~~E~~~~~~p~~~Yg~sK~~~E~~~~~~~~  158 (314)
T COG0451          80 SNASDPAEFLDVNVDGTLNLLEAARAAGVKRFVFASSVSVVYGDPPPLPIDEDLGPPRPLNPYGVSKLAAEQLLRAYAR  158 (314)
T ss_pred             hhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCCCceECCCCCCCCcccccCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence                   378899999999999999989999999777 444422            12223699999999999998863

>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases

Probab=99.88  E-value=1.8e-22  Score=160.53  Aligned_cols=136  Identities=21%  Similarity=0.206  Sum_probs=104.1

Q ss_pred             EEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCccc---cc----CCCcee----EEEccCCCHhhHHHHhc--CccE
Q 028890           59 LLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR---DS----WANNVI----WHQGNLLSSDSWKEALD--GVTA  124 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~---~~----~~~~~~----~~~~D~~~~~~~~~~~~--~~d~  124 (202)
                      |+||||+|.||+.|+++|++.+ .++++++|++.....   ..    ...++.    .+.+|++|.+.+.++++  ++|+
T Consensus         1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdi   80 (293)
T PF02719_consen    1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDI   80 (293)
T ss_dssp             EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SE
T ss_pred             CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCE
Confidence            7999999999999999999997 589999998654111   11    123443    45899999999999999  8999


Q ss_pred             eEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhcccC
Q 028890          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSVLG  197 (202)
Q Consensus       125 vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~l~  197 (202)
                      |||+|+..+      .+...+++|+.|+.|++++|.++++++||++||   +....|.+.||+||+.+|.++..++...
T Consensus        81 VfHaAA~KhVpl~E~~p~eav~tNv~GT~nv~~aa~~~~v~~~v~IST---DKAv~PtnvmGatKrlaE~l~~~~~~~~  156 (293)
T PF02719_consen   81 VFHAAALKHVPLMEDNPFEAVKTNVLGTQNVAEAAIEHGVERFVFIST---DKAVNPTNVMGATKRLAEKLVQAANQYS  156 (293)
T ss_dssp             EEE------HHHHCCCHHHHHHHHCHHHHHHHHHHHHTT-SEEEEEEE---CGCSS--SHHHHHHHHHHHHHHHHCCTS
T ss_pred             EEEChhcCCCChHHhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc---cccCCCCcHHHHHHHHHHHHHHHHhhhC
Confidence            999999754      456788999999999999999999999999999   6677788999999999999999886533

The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=99.88  E-value=8.2e-22  Score=161.46  Aligned_cols=140  Identities=22%  Similarity=0.286  Sum_probs=111.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----c--cCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----D--SWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      .+|+++||||+||||++++++|+++|++|++++|+......     .  ....+++++.+|++|++++.++++++|+|||
T Consensus         4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih   83 (325)
T PLN02989          4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFH   83 (325)
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEE
Confidence            46899999999999999999999999999998887643211     0  1124688999999999999999999999999


Q ss_pred             ccccCC------CCccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcCC---------------c------CCcc
Q 028890          128 CVGGFG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVAN---------------Y------LLQG  178 (202)
Q Consensus       128 ~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~~~~---------------~------~~~~  178 (202)
                      |||...      .+...+++|+.++.+++++|.+. +.++||++|| ..|+...               .      +.++
T Consensus        84 ~A~~~~~~~~~~~~~~~~~~n~~g~~~ll~a~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~~E~~~~~p~~~~~~~~~  163 (325)
T PLN02989         84 TASPVAITVKTDPQVELINPAVNGTINVLRTCTKVSSVKRVILTSSMAAVLAPETKLGPNDVVDETFFTNPSFAEERKQW  163 (325)
T ss_pred             eCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHcCCceEEEEecchhheecCCccCCCCCccCcCCCCchhHhcccccc
Confidence            999642      22456789999999999999875 5689999999 4443211               0      1257


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.++|++++.|.
T Consensus       164 Y~~sK~~~E~~~~~~~  179 (325)
T PLN02989        164 YVLSKTLAEDAAWRFA  179 (325)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999998764

>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional

Probab=99.88  E-value=6.3e-22  Score=160.66  Aligned_cols=124  Identities=19%  Similarity=0.193  Sum_probs=102.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFGS  134 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~~  134 (202)
                      |+||||||+||||++++++|+++| +|++++|...            .+.+|+.|.+.+.++++  ++|+|||+|+....
T Consensus         1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~~------------~~~~Dl~d~~~~~~~~~~~~~D~Vih~Aa~~~~   67 (299)
T PRK09987          1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHST------------DYCGDFSNPEGVAETVRKIRPDVIVNAAAHTAV   67 (299)
T ss_pred             CeEEEECCCCHHHHHHHHHhhccC-CEEEeccccc------------cccCCCCCHHHHHHHHHhcCCCEEEECCccCCc
Confidence            589999999999999999999999 7998887531            24679999999999888  58999999997542


Q ss_pred             ------CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHHHhc
Q 028890          135 ------NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       135 ------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                            +...+.+|+.++.+++++|++.++ +|||+|| .+|+..          ..|.+.|+.+|..+|++++.+.
T Consensus        68 ~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~-~~v~~Ss~~Vy~~~~~~p~~E~~~~~P~~~Yg~sK~~~E~~~~~~~  143 (299)
T PRK09987         68 DKAESEPEFAQLLNATSVEAIAKAANEVGA-WVVHYSTDYVFPGTGDIPWQETDATAPLNVYGETKLAGEKALQEHC  143 (299)
T ss_pred             chhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEccceEECCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence                  234567999999999999999985 8999999 666532          1345789999999999998763

>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional

Probab=99.87  E-value=1.7e-21  Score=161.38  Aligned_cols=139  Identities=17%  Similarity=0.208  Sum_probs=107.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCc-cc---c-cCCCceeEEEccCCCHhhHHHHhcC--ccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSS-LR---D-SWANNVIWHQGNLLSSDSWKEALDG--VTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~-~~---~-~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~  127 (202)
                      |++|+||||+||||++++++|+++|++++++ +|..... ..   . ....++.++.+|+.|.+++.+++++  +|+|||
T Consensus         1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~Vih   80 (355)
T PRK10217          1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAGNLMSLAPVAQSERFAFEKVDICDRAELARVFTEHQPDCVMH   80 (355)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCccccchhhhhhcccCCceEEEECCCcChHHHHHHHhhcCCCEEEE
Confidence            4689999999999999999999999876544 4432211 00   1 1123578899999999999999984  899999


Q ss_pred             ccccCC------CCccchhhhHHHHHHHHHHHHH---------cCCCEEEEEec-cccCcC------------CcCCcch
Q 028890          128 CVGGFG------SNSYMYKINGTANINAIRAASE---------KGVKRFVYISA-ADFGVA------------NYLLQGY  179 (202)
Q Consensus       128 ~a~~~~------~~~~~~~~n~~~~~~~~~~~~~---------~~~~~~v~~SS-~~~~~~------------~~~~~~Y  179 (202)
                      +||...      .+...+++|+.++.+++++|.+         .++++||++|| .+|+..            ..+.+.|
T Consensus        81 ~A~~~~~~~~~~~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~E~~~~~p~s~Y  160 (355)
T PRK10217         81 LAAESHVDRSIDGPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPYAPSSPY  160 (355)
T ss_pred             CCcccCcchhhhChHHHHHHhhHHHHHHHHHHHHhhhcccccccCceEEEEecchhhcCCCCCCCCCcCCCCCCCCCChh
Confidence            999643      2345778999999999999976         34679999999 667631            1345679


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.||.++|.+++.+.
T Consensus       161 ~~sK~~~e~~~~~~~  175 (355)
T PRK10217        161 SASKASSDHLVRAWL  175 (355)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.87  E-value=1.2e-21  Score=153.73  Aligned_cols=138  Identities=22%  Similarity=0.221  Sum_probs=114.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCC----cc-cccCCCceeEEEccCCCHhhHHHHhc--CccEeEE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRS----SL-RDSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~----~~-~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~  127 (202)
                      |++|||||+||||+.+++.++++.  .+|++++.-.-.    .. .....++..|+++|+.|.+.+.++++  .+|+|+|
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccCHHHHHHHHHhcCCCeEEE
Confidence            589999999999999999999985  357777753211    11 12234699999999999999999998  5999999


Q ss_pred             ccccCC------CCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcC------------CcCCcchHHHHHHHH
Q 028890          128 CVGGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVA------------NYLLQGYYEGKVLSS  187 (202)
Q Consensus       128 ~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS-~~~~~~------------~~~~~~Y~~sK~~~E  187 (202)
                      .|+-++      .+..++++|+.|+.++++++++...+ ||+++|+ -+||.-            -.|.+||++||++++
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD  160 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD  160 (340)
T ss_pred             echhccccccccChhhhhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHH
Confidence            999654      56788999999999999999998864 9999999 777742            246789999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .++++|.
T Consensus       161 ~lVray~  167 (340)
T COG1088         161 LLVRAYV  167 (340)
T ss_pred             HHHHHHH
Confidence            9999984

>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila

Probab=99.87  E-value=2.9e-22  Score=158.65  Aligned_cols=134  Identities=25%  Similarity=0.388  Sum_probs=94.0

Q ss_pred             EEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc---------c------c---cCCCceeEEEccCCCH------hh
Q 028890           61 VLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL---------R------D---SWANNVIWHQGNLLSS------DS  114 (202)
Q Consensus        61 VtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~---------~------~---~~~~~~~~~~~D~~~~------~~  114 (202)
                      |||||||+|++|+++|++++.  +|+|+.|..+...         .      .   ....+++++.+|++++      +.
T Consensus         1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~~~~lGL~~~~   80 (249)
T PF07993_consen    1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALERLKDALKEYGLWDDLDKEALSRIEVVEGDLSQPNLGLSDED   80 (249)
T ss_dssp             EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHHHHHGGG-SS-HHHHH-HHHTTTEEEEE--TTSGGGG--HHH
T ss_pred             CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchhhhhhhcccccchhhhhhhhhccEEEEeccccccccCCChHH
Confidence            799999999999999999986  9999999864310         0      0   1257999999999874      56


Q ss_pred             HHHHhcCccEeEEccccCC---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC------------------
Q 028890          115 WKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA------------------  172 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~-~~~~~------------------  172 (202)
                      +.++.+++|+|||||+..+   +....+++|+.|+.++++.|.+.+.++|+|+||+ ..+..                  
T Consensus        81 ~~~L~~~v~~IiH~Aa~v~~~~~~~~~~~~NV~gt~~ll~la~~~~~~~~~~iSTa~v~~~~~~~~~~~~~~~~~~~~~~  160 (249)
T PF07993_consen   81 YQELAEEVDVIIHCAASVNFNAPYSELRAVNVDGTRNLLRLAAQGKRKRFHYISTAYVAGSRPGTIEEKVYPEEEDDLDP  160 (249)
T ss_dssp             HHHHHHH--EEEE--SS-SBS-S--EEHHHHHHHHHHHHHHHTSSS---EEEEEEGGGTTS-TTT--SSS-HHH--EEE-
T ss_pred             hhccccccceeeecchhhhhcccchhhhhhHHHHHHHHHHHHHhccCcceEEeccccccCCCCCcccccccccccccchh
Confidence            7777789999999999765   3456789999999999999997776799999993 22111                  


Q ss_pred             -CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 -NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 -~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                       ....++|.+||+.+|++++.+.
T Consensus       161 ~~~~~~gY~~SK~~aE~~l~~a~  183 (249)
T PF07993_consen  161 PQGFPNGYEQSKWVAERLLREAA  183 (249)
T ss_dssp             -TTSEE-HHHHHHHHHHHHHHHH
T ss_pred             hccCCccHHHHHHHHHHHHHHHH
Confidence             1234689999999999999876

A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.

>PLN02240 UDP-glucose 4-epimerase

Probab=99.87  E-value=3.4e-21  Score=159.29  Aligned_cols=141  Identities=22%  Similarity=0.354  Sum_probs=113.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cc---cCCCceeEEEccCCCHhhHHHHhc--Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALD--GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~---~~~~~~~~~~~D~~~~~~~~~~~~--~~  122 (202)
                      .++++|+||||+|++|++++++|+++|++|++++|......      ..   ....+++++.+|+.|++.+.++++  ++
T Consensus         3 ~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~~~   82 (352)
T PLN02240          3 LMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEEALRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRF   82 (352)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHHHHHHHHHhhcccCccceEEecCcCCHHHHHHHHHhCCC
Confidence            35689999999999999999999999999999987542210      00   112468899999999999998886  68


Q ss_pred             cEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHH
Q 028890          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVL  185 (202)
Q Consensus       123 d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~  185 (202)
                      |+|||+|+...      ++...+++|+.++.+++++|++.++++||++|| .+|+..          ..+.++|+.+|.+
T Consensus        83 d~vih~a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~  162 (352)
T PLN02240         83 DAVIHFAGLKAVGESVAKPLLYYDNNLVGTINLLEVMAKHGCKKLVFSSSATVYGQPEEVPCTEEFPLSATNPYGRTKLF  162 (352)
T ss_pred             CEEEEccccCCccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCCHHHHHHHH
Confidence            99999998542      234468899999999999999989899999999 566532          1245789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      +|++++.+.
T Consensus       163 ~e~~~~~~~  171 (352)
T PLN02240        163 IEEICRDIH  171 (352)
T ss_pred             HHHHHHHHH
Confidence            999998753

>PLN02686 cinnamoyl-CoA reductase

Probab=99.87  E-value=1.9e-21  Score=162.12  Aligned_cols=143  Identities=20%  Similarity=0.239  Sum_probs=112.7

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--cc--------CCCceeEEEccCCCHhhHHHHhcC
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DS--------WANNVIWHQGNLLSSDSWKEALDG  121 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~--------~~~~~~~~~~D~~~~~~~~~~~~~  121 (202)
                      ...++|+|+||||+||||++++++|+++|++|+++.|+......  ..        ...++.++.+|++|++++.+++++
T Consensus        49 ~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l~~l~~~~~~~~~~~~~~~v~~Dl~d~~~l~~~i~~  128 (367)
T PLN02686         49 ADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKLREMEMFGEMGRSNDGIWTVMANLTEPESLHEAFDG  128 (367)
T ss_pred             cCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhccccccCCceEEEEcCCCCHHHHHHHHHh
Confidence            34578899999999999999999999999999998886432110  00        013578999999999999999999


Q ss_pred             ccEeEEccccCCC------CccchhhhHHHHHHHHHHHHHc-CCCEEEEEecc---ccCc--C-C---------------
Q 028890          122 VTAVISCVGGFGS------NSYMYKINGTANINAIRAASEK-GVKRFVYISAA---DFGV--A-N---------------  173 (202)
Q Consensus       122 ~d~vi~~a~~~~~------~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS~---~~~~--~-~---------------  173 (202)
                      +|+|||+++....      +....++|+.++.+++++|++. ++++|||+||.   +|+.  + .               
T Consensus       129 ~d~V~hlA~~~~~~~~~~~~~~~~~~nv~gt~~llea~~~~~~v~r~V~~SS~~~~vyg~~~~~~~~~~i~E~~~~~~~~  208 (367)
T PLN02686        129 CAGVFHTSAFVDPAGLSGYTKSMAELEAKASENVIEACVRTESVRKCVFTSSLLACVWRQNYPHDLPPVIDEESWSDESF  208 (367)
T ss_pred             ccEEEecCeeecccccccccchhhhhhHHHHHHHHHHHHhcCCccEEEEeccHHHhcccccCCCCCCcccCCCCCCChhh
Confidence            9999999986432      1345678999999999999886 79999999993   4442  1 0               


Q ss_pred             --cCCcchHHHHHHHHHHHHHhc
Q 028890          174 --YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 --~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                        .+.++|+.+|.++|++++.|.
T Consensus       209 ~~~p~~~Y~~sK~~~E~~~~~~~  231 (367)
T PLN02686        209 CRDNKLWYALGKLKAEKAAWRAA  231 (367)
T ss_pred             cccccchHHHHHHHHHHHHHHHH
Confidence              123469999999999998764

>PRK10675 UDP-galactose-4-epimerase; Provisional

Probab=99.87  E-value=4.3e-21  Score=157.88  Aligned_cols=138  Identities=22%  Similarity=0.322  Sum_probs=110.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      |+|+||||+|+||++++++|+++|++|++++|.......      .....++.++.+|+.|++++.++++  ++|+|||+
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vvh~   80 (338)
T PRK10675          1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALLTEILHDHAIDTVIHF   80 (338)
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchHhHHHHHHHhcCCCceEEEccCCCHHHHHHHHhcCCCCEEEEC
Confidence            589999999999999999999999999998765322111      1112357789999999999998886  58999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchHHHHHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~  190 (202)
                      |+...      .+...+++|+.++.+++++|++.++++||++|| .+|+...           .+.++|+.+|.++|+++
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~yg~~~~~~~~E~~~~~~p~~~Y~~sK~~~E~~~  160 (338)
T PRK10675         81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL  160 (338)
T ss_pred             CccccccchhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhhCCCCCCccccccCCCCCCChhHHHHHHHHHHH
Confidence            98643      124567899999999999999999999999999 5665321           34678999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       161 ~~~~  164 (338)
T PRK10675        161 TDLQ  164 (338)
T ss_pred             HHHH
Confidence            8763

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=99.87  E-value=4.9e-21  Score=156.50  Aligned_cols=137  Identities=32%  Similarity=0.448  Sum_probs=113.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC---
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG---  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~---  133 (202)
                      |+++||||+|+||+++++.|+++|++|++++|++... ......+++++.+|+.|++++.++++++|+|||+|+...   
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~~~~~~~   79 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDR-RNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAADYRLWA   79 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccc-cccccCCceEEEeeCCCHHHHHHHHhCCCEEEEeceecccCC
Confidence            4799999999999999999999999999999976542 112234788999999999999999999999999998643   


Q ss_pred             -CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc--------------CCcchHHHHHHHHHHHHHhc
Q 028890          134 -SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY--------------LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~--------------~~~~Y~~sK~~~E~~~~~~~  194 (202)
                       .+...+++|+.++.++++++++.+++++|++|| .+|+....              ..+.|+.+|.++|++++.+.
T Consensus        80 ~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~~~~Y~~sK~~~e~~~~~~~  156 (328)
T TIGR03466        80 PDPEEMYAANVEGTRNLLRAALEAGVERVVYTSSVATLGVRGDGTPADETTPSSLDDMIGHYKRSKFLAEQAALEMA  156 (328)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEechhhcCcCCCCCCcCccCCCCcccccChHHHHHHHHHHHHHHHH
Confidence             234567899999999999999999999999999 56663111              13479999999999998864

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor

Probab=99.86  E-value=2.7e-21  Score=150.95  Aligned_cols=136  Identities=27%  Similarity=0.387  Sum_probs=115.0

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCc--cEeEEccccCC---
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGV--TAVISCVGGFG---  133 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--d~vi~~a~~~~---  133 (202)
                      |+||||+||||++++++|+++|++|+.+.|+...........+++++.+|+.|.+.+.++++..  |+|||+|+...   
T Consensus         1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~d~vi~~a~~~~~~~   80 (236)
T PF01370_consen    1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESFEEKKLNVEFVIGDLTDKEQLEKLLEKANIDVVIHLAAFSSNPE   80 (236)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHHHHHHTTEEEEESETTSHHHHHHHHHHHTESEEEEEBSSSSHHH
T ss_pred             EEEEccCCHHHHHHHHHHHHcCCccccccccccccccccccceEEEEEeeccccccccccccccCceEEEEeeccccccc
Confidence            7999999999999999999999999999988766433222238999999999999999999865  99999999753   


Q ss_pred             ---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                         .....++.|+.++.+++++|++.+++++|++|| .+|+...          .+.++|+.+|...|++++.+.
T Consensus        81 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~~~~~~~~~e~~~~~~~~~Y~~~K~~~e~~~~~~~  155 (236)
T PF01370_consen   81 SFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYGDPDGEPIDEDSPINPLSPYGASKRAAEELLRDYA  155 (236)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGTSSSSSSBETTSGCCHSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence               345677889999999999999999999999999 5777552          235679999999999999875

The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....

>PLN02166 dTDP-glucose 4,6-dehydratase

Probab=99.86  E-value=3.1e-21  Score=163.82  Aligned_cols=134  Identities=21%  Similarity=0.196  Sum_probs=105.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +.|+|+||||+||||++|+++|+++|++|++++|.......    .....+++++.+|+.+..     +.++|+|||+|+
T Consensus       119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~-----~~~~D~ViHlAa  193 (436)
T PLN02166        119 KRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPI-----LLEVDQIYHLAC  193 (436)
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECcccccc-----ccCCCEEEECce
Confidence            56799999999999999999999999999999975322111    111246788888986543     468999999998


Q ss_pred             cCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchHHHHHHHHH
Q 028890          131 GFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGKVLSSD  188 (202)
Q Consensus       131 ~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------------~~~~~Y~~sK~~~E~  188 (202)
                      ...      ++...+++|+.++.+++++|++.+. +|||+|| .+||...               .+.+.|+.+|..+|+
T Consensus       194 ~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~p~~p~s~Yg~SK~~aE~  272 (436)
T PLN02166        194 PASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLEHPQKETYWGNVNPIGERSCYDEGKRTAET  272 (436)
T ss_pred             eccchhhccCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECcHHHhCCCCCCCCCccccccCCCCCCCCchHHHHHHHHH
Confidence            533      2345678999999999999999885 8999999 6777421               123569999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.|.
T Consensus       273 ~~~~y~  278 (436)
T PLN02166        273 LAMDYH  278 (436)
T ss_pred             HHHHHH
Confidence            998875

>PLN02583 cinnamoyl-CoA reductase

Probab=99.86  E-value=1.1e-20  Score=153.25  Aligned_cols=140  Identities=20%  Similarity=0.259  Sum_probs=110.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----ccc--CCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDS--WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      .+++|+||||+|+||++++++|+++||+|++++|+.....     ...  ...+++++.+|++|.+++.+++.++|.|+|
T Consensus         5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~~~~~l~~~d~v~~   84 (297)
T PLN02583          5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETEIEKEIRGLSCEEERLKVFDVDPLDYHSILDALKGCSGLFC   84 (297)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhhHHHHHHhcccCCCceEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            4579999999999999999999999999999998643211     111  124688999999999999999999999999


Q ss_pred             ccccCCC----CccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cc--cCcCC---------cCC----------cchH
Q 028890          128 CVGGFGS----NSYMYKINGTANINAIRAASEK-GVKRFVYISA-AD--FGVAN---------YLL----------QGYY  180 (202)
Q Consensus       128 ~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~--~~~~~---------~~~----------~~Y~  180 (202)
                      .++....    +...+++|+.++.+++++|.+. ++++||++|| +.  ++...         ..+          ..|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~riV~~SS~~a~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~Y~  164 (297)
T PLN02583         85 CFDPPSDYPSYDEKMVDVEVRAAHNVLEACAQTDTIEKVVFTSSLTAVIWRDDNISTQKDVDERSWSDQNFCRKFKLWHA  164 (297)
T ss_pred             eCccCCcccccHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecchHheecccccCCCCCCCCcccCCCHHHHhhcccHHH
Confidence            8865432    3457899999999999999886 5889999999 33  23110         001          1699


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .||..+|++++.|.
T Consensus       165 ~sK~~aE~~~~~~~  178 (297)
T PLN02583        165 LAKTLSEKTAWALA  178 (297)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998764

>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.86  E-value=3e-21  Score=156.47  Aligned_cols=140  Identities=23%  Similarity=0.281  Sum_probs=114.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcc---------------cccCCCceeEEEccCC------CHhh
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL---------------RDSWANNVIWHQGNLL------SSDS  114 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~---------------~~~~~~~~~~~~~D~~------~~~~  114 (202)
                      +++++||||||+|.+++.+|+.+- .+|+|++|..+.+.               .+.+.++++++.+|+.      +...
T Consensus         1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~lGL~~~~   80 (382)
T COG3320           1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAALARLEKTFDLYRHWDELSADRVEVVAGDLAEPDLGLSERT   80 (382)
T ss_pred             CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHhhhhhhhhhhhcceEEEEecccccccCCCCHHH
Confidence            479999999999999999999884 59999999876321               1234578999999996      3567


Q ss_pred             HHHHhcCccEeEEccccCC---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc-------------------
Q 028890          115 WKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV-------------------  171 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~-------------------  171 (202)
                      +.++.+.+|.|||||+..+   +......+|+.|+..+++.|...+.|.+.|+|| +++..                   
T Consensus        81 ~~~La~~vD~I~H~gA~Vn~v~pYs~L~~~NVlGT~evlrLa~~gk~Kp~~yVSsisv~~~~~~~~~~~~~~~~~~~~~~  160 (382)
T COG3320          81 WQELAENVDLIIHNAALVNHVFPYSELRGANVLGTAEVLRLAATGKPKPLHYVSSISVGETEYYSNFTVDFDEISPTRNV  160 (382)
T ss_pred             HHHHhhhcceEEecchhhcccCcHHHhcCcchHhHHHHHHHHhcCCCceeEEEeeeeeccccccCCCccccccccccccc
Confidence            8888889999999999655   456788999999999999999988899999999 43221                   


Q ss_pred             CCcCCcchHHHHHHHHHHHHHhccc
Q 028890          172 ANYLLQGYYEGKVLSSDVAACQSVL  196 (202)
Q Consensus       172 ~~~~~~~Y~~sK~~~E~~~~~~~~l  196 (202)
                      .....++|++|||++|.++++....
T Consensus       161 ~~~~~~GY~~SKwvaE~Lvr~A~~r  185 (382)
T COG3320         161 GQGLAGGYGRSKWVAEKLVREAGDR  185 (382)
T ss_pred             cCccCCCcchhHHHHHHHHHHHhhc
Confidence            1123478999999999999998765

>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]

Probab=99.86  E-value=5.3e-21  Score=151.84  Aligned_cols=139  Identities=22%  Similarity=0.335  Sum_probs=117.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccC--CCceeEEEccCCCHhhHHHHhc--CccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSW--ANNVIWHQGNLLSSDSWKEALD--GVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~--~~~~~~~~~D~~~~~~~~~~~~--~~d~v  125 (202)
                      .++|+||||+||||+|.+-+|+++|+.|.+++.=...-.      ....  ..++.++++|+.|.+.++++|+  .+|.|
T Consensus         2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~~~~fd~V   81 (343)
T KOG1371|consen    2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFSEVKFDAV   81 (343)
T ss_pred             CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHhhcCCceE
Confidence            468999999999999999999999999999984322211      1112  3689999999999999999998  58999


Q ss_pred             EEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------c-CCcchHHHHHHHH
Q 028890          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------Y-LLQGYYEGKVLSS  187 (202)
Q Consensus       126 i~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~-~~~~Y~~sK~~~E  187 (202)
                      +|.|+...      .+...+..|+.|++++++.|++++++.+||.|| ++||.+.          . |.++|+.+|.+.|
T Consensus        82 ~Hfa~~~~vgeS~~~p~~Y~~nNi~gtlnlLe~~~~~~~~~~V~sssatvYG~p~~ip~te~~~t~~p~~pyg~tK~~iE  161 (343)
T KOG1371|consen   82 MHFAALAAVGESMENPLSYYHNNIAGTLNLLEVMKAHNVKALVFSSSATVYGLPTKVPITEEDPTDQPTNPYGKTKKAIE  161 (343)
T ss_pred             EeehhhhccchhhhCchhheehhhhhHHHHHHHHHHcCCceEEEecceeeecCcceeeccCcCCCCCCCCcchhhhHHHH
Confidence            99999543      456788899999999999999999999999999 7888543          2 6789999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      +++..+.
T Consensus       162 ~i~~d~~  168 (343)
T KOG1371|consen  162 EIIHDYN  168 (343)
T ss_pred             HHHHhhh
Confidence            9999875

>PLN02206 UDP-glucuronate decarboxylase

Probab=99.86  E-value=4e-21  Score=163.38  Aligned_cols=134  Identities=21%  Similarity=0.224  Sum_probs=105.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +.|+|+||||+||||++|++.|+++|++|++++|......    ......+++++.+|+.++.     +.++|+|||+|+
T Consensus       118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~-----l~~~D~ViHlAa  192 (442)
T PLN02206        118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPI-----LLEVDQIYHLAC  192 (442)
T ss_pred             CCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChh-----hcCCCEEEEeee
Confidence            5689999999999999999999999999999987532211    1112346888899987653     457999999998


Q ss_pred             cCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchHHHHHHHHH
Q 028890          131 GFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGKVLSSD  188 (202)
Q Consensus       131 ~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------------~~~~~Y~~sK~~~E~  188 (202)
                      ...      ++...+++|+.++.+++++|++.++ +|||+|| .+|+...               .+.+.|+.+|.++|+
T Consensus       193 ~~~~~~~~~~p~~~~~~Nv~gt~nLleaa~~~g~-r~V~~SS~~VYg~~~~~p~~E~~~~~~~P~~~~s~Y~~SK~~aE~  271 (442)
T PLN02206        193 PASPVHYKFNPVKTIKTNVVGTLNMLGLAKRVGA-RFLLTSTSEVYGDPLQHPQVETYWGNVNPIGVRSCYDEGKRTAET  271 (442)
T ss_pred             ecchhhhhcCHHHHHHHHHHHHHHHHHHHHHhCC-EEEEECChHHhCCCCCCCCCccccccCCCCCccchHHHHHHHHHH
Confidence            532      2345678999999999999999886 9999999 6776321               113579999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.|.
T Consensus       272 ~~~~y~  277 (442)
T PLN02206        272 LTMDYH  277 (442)
T ss_pred             HHHHHH
Confidence            998764

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=99.86  E-value=3.3e-20  Score=155.73  Aligned_cols=137  Identities=25%  Similarity=0.336  Sum_probs=112.8

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      .+.++++|+||||+|+||++++++|+++|++|++++|+......       .....+++++.+|++|++++.++++    
T Consensus        56 ~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~  135 (390)
T PLN02657         56 KEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGD  135 (390)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCC
Confidence            34567899999999999999999999999999999997643210       1123578999999999999999988    


Q ss_pred             CccEeEEccccCC-CCccchhhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          121 GVTAVISCVGGFG-SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       121 ~~d~vi~~a~~~~-~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ++|+||||++... .....+++|+.++.++++++++.++++||++||. ++    .+...|..+|..+|+.++.
T Consensus       136 ~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~~v~----~p~~~~~~sK~~~E~~l~~  205 (390)
T PLN02657        136 PVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAICVQ----KPLLEFQRAKLKFEAELQA  205 (390)
T ss_pred             CCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeecccc----CcchHHHHHHHHHHHHHHh
Confidence            5999999998532 2345678999999999999999999999999993 33    2456799999999998875

>KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism]

Probab=99.86  E-value=7.8e-21  Score=155.29  Aligned_cols=140  Identities=25%  Similarity=0.389  Sum_probs=114.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcc-c-cc---CCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL-R-DS---WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~-~-~~---~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ++.+++||||+||+|++|+++|++++  .+|++++..+.... . ..   .+..++++++|+.|...+.++++++ .|+|
T Consensus         3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~~e~~~~~~~~v~~~~~D~~~~~~i~~a~~~~-~Vvh   81 (361)
T KOG1430|consen    3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLPAELTGFRSGRVTVILGDLLDANSISNAFQGA-VVVH   81 (361)
T ss_pred             cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccchhhhcccCCceeEEecchhhhhhhhhhccCc-eEEE
Confidence            56799999999999999999999998  79999998775321 1 11   2568999999999999999999999 7777


Q ss_pred             ccccC------CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc-------------CCcCCcchHHHHHHHH
Q 028890          128 CVGGF------GSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV-------------ANYLLQGYYEGKVLSS  187 (202)
Q Consensus       128 ~a~~~------~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~-------------~~~~~~~Y~~sK~~~E  187 (202)
                      ||+..      .+.+..+++|+.|+.+++++|.+.+++++||+|| .+...             +.....+|+.||..+|
T Consensus        82 ~aa~~~~~~~~~~~~~~~~vNV~gT~nvi~~c~~~~v~~lIYtSs~~Vvf~g~~~~n~~E~~p~p~~~~d~Y~~sKa~aE  161 (361)
T KOG1430|consen   82 CAASPVPDFVENDRDLAMRVNVNGTLNVIEACKELGVKRLIYTSSAYVVFGGEPIINGDESLPYPLKHIDPYGESKALAE  161 (361)
T ss_pred             eccccCccccccchhhheeecchhHHHHHHHHHHhCCCEEEEecCceEEeCCeecccCCCCCCCccccccccchHHHHHH
Confidence            77632      2367788999999999999999999999999999 33211             1112358999999999


Q ss_pred             HHHHHhcc
Q 028890          188 DVAACQSV  195 (202)
Q Consensus       188 ~~~~~~~~  195 (202)
                      +++++.++
T Consensus       162 ~~Vl~an~  169 (361)
T KOG1430|consen  162 KLVLEANG  169 (361)
T ss_pred             HHHHHhcC
Confidence            99999874

>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional

Probab=99.85  E-value=1e-20  Score=156.57  Aligned_cols=138  Identities=19%  Similarity=0.235  Sum_probs=107.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCe-EEEEecCCC-Cc---cccc-CCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGR-SS---LRDS-WANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l~r~~~-~~---~~~~-~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      |+|+||||+||||++++++|+++|++ |+++++... ..   .... ...+++++.+|+.|.+++.++++  ++|+|||+
T Consensus         1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (352)
T PRK10084          1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNLESLADVSDSERYVFEHADICDRAELDRIFAQHQPDAVMHL   80 (352)
T ss_pred             CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchHHHHHhcccCCceEEEEecCCCHHHHHHHHHhcCCCEEEEC
Confidence            48999999999999999999999976 555555321 11   1111 12457889999999999999886  48999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHc---------CCCEEEEEec-cccCcC--------------------
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEK---------GVKRFVYISA-ADFGVA--------------------  172 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~---------~~~~~v~~SS-~~~~~~--------------------  172 (202)
                      |+...      .+...+++|+.|+.+++++|++.         ++++||++|| .+|+..                    
T Consensus        81 A~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~E~~~  160 (352)
T PRK10084         81 AAESHVDRSITGPAAFIETNIVGTYVLLEAARNYWSALDEDKKNAFRFHHISTDEVYGDLPHPDEVENSEELPLFTETTA  160 (352)
T ss_pred             CcccCCcchhcCchhhhhhhhHHHHHHHHHHHHhccccccccccceeEEEecchhhcCCCCccccccccccCCCccccCC
Confidence            99643      24567899999999999999864         4569999999 667631                    


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..+.+.|+.+|.++|.+++.+.
T Consensus       161 ~~p~~~Y~~sK~~~E~~~~~~~  182 (352)
T PRK10084        161 YAPSSPYSASKASSDHLVRAWL  182 (352)
T ss_pred             CCCCChhHHHHHHHHHHHHHHH
Confidence            1245689999999999998764

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.85  E-value=1.7e-20  Score=167.24  Aligned_cols=141  Identities=18%  Similarity=0.279  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCc-c----cccCCCceeEEEccCCCHhhHHHHh--cCccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSS-L----RDSWANNVIWHQGNLLSSDSWKEAL--DGVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~-~----~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~  124 (202)
                      .++|+|+||||+||||++++++|+++  +++|++++|..... .    ......+++++.+|+.|.+.+..++  .++|+
T Consensus         4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~~~~~~~~~~~~D~   83 (668)
T PLN02260          4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSNLKNLNPSKSSPNFKFVKGDIASADLVNYLLITEGIDT   83 (668)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccchhhhhhhcccCCCeEEEECCCCChHHHHHHHhhcCCCE
Confidence            35689999999999999999999998  68999998753110 0    0111347899999999999888765  57999


Q ss_pred             eEEccccCCC------CccchhhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcCC-------------cCCcchHHHH
Q 028890          125 VISCVGGFGS------NSYMYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVAN-------------YLLQGYYEGK  183 (202)
Q Consensus       125 vi~~a~~~~~------~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS-~~~~~~~-------------~~~~~Y~~sK  183 (202)
                      |||+|+....      +...+++|+.++.+++++|++.+ +++|||+|| .+||...             .+.++|+.+|
T Consensus        84 ViHlAa~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~vkr~I~~SS~~vyg~~~~~~~~~~~E~~~~~p~~~Y~~sK  163 (668)
T PLN02260         84 IMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVYGETDEDADVGNHEASQLLPTNPYSATK  163 (668)
T ss_pred             EEECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEcchHHhCCCccccccCccccCCCCCCCCcHHHH
Confidence            9999997542      23467899999999999999987 899999999 6676421             1356899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .++|++++.|.
T Consensus       164 ~~aE~~v~~~~  174 (668)
T PLN02260        164 AGAEMLVMAYG  174 (668)
T ss_pred             HHHHHHHHHHH
Confidence            99999998763

>PRK06482 short chain dehydrogenase; Provisional

Probab=99.85  E-value=1.7e-20  Score=150.37  Aligned_cols=139  Identities=20%  Similarity=0.151  Sum_probs=109.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++++||||+|+||++++++|+++|++|+++.|+.....  ......++.++.+|++|.+++.++++       ++|+||
T Consensus         2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (276)
T PRK06482          2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVV   81 (276)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            468999999999999999999999999999999754311  11123578899999999998877664       479999


Q ss_pred             EccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||....          +...+++|+.++.++++++    ++.+.++||++||.....+.++.+.|+.+|++.|.+++.
T Consensus        82 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~  161 (276)
T PRK06482         82 SNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGGRIVQVSSEGGQIAYPGFSLYHATKWGIEGFVEA  161 (276)
T ss_pred             ECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcCcccccCCCCCchhHHHHHHHHHHHHH
Confidence            99996431          1346678999999999987    556678999999943222334567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       162 l~  163 (276)
T PRK06482        162 VA  163 (276)
T ss_pred             HH
Confidence            64

>PRK06180 short chain dehydrogenase; Provisional

Probab=99.84  E-value=3.3e-20  Score=148.86  Aligned_cols=140  Identities=12%  Similarity=0.108  Sum_probs=109.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+..+...  .....++.++.+|+.|++++.++++       ++|+|
T Consensus         3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~v   82 (277)
T PRK06180          3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVL   82 (277)
T ss_pred             CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            46789999999999999999999999999999997653211  1123468889999999998887776       47999


Q ss_pred             EEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||....          +...+++|+.++.++++++    ++.+.+++|++||.....+.++...|+.+|.+.|.+++
T Consensus        83 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~iSS~~~~~~~~~~~~Y~~sK~a~~~~~~  162 (277)
T PRK06180         83 VNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRGHIVNITSMGGLITMPGIGYYCGSKFALEGISE  162 (277)
T ss_pred             EECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCCEEEEEecccccCCCCCcchhHHHHHHHHHHHH
Confidence            999996431          1345789999999998885    34556799999993222234556789999999999888


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .+.
T Consensus       163 ~la  165 (277)
T PRK06180        163 SLA  165 (277)
T ss_pred             HHH
Confidence            764

>PLN02996 fatty acyl-CoA reductase

Probab=99.84  E-value=3.3e-20  Score=159.66  Aligned_cols=118  Identities=18%  Similarity=0.202  Sum_probs=93.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC---CeEEEEecCCCCccc------c--------------------cCCCceeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLR------D--------------------SWANNVIW  104 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l~r~~~~~~~------~--------------------~~~~~~~~  104 (202)
                      .++++|+|||||||+|++++++|++.+   .+|+++.|.......      .                    ....++++
T Consensus         9 ~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~~~f~~~~~~~~~~~~~~~~~kv~~   88 (491)
T PLN02996          9 LENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGKDLFKVLREKLGENLNSLISEKVTP   88 (491)
T ss_pred             hCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhchHHHHHHHhcchhhhhhhhcCEEE
Confidence            467899999999999999999999864   378999997643110      0                    00157899


Q ss_pred             EEccCC-------CHhhHHHHhcCccEeEEccccCC---CCccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCc
Q 028890          105 HQGNLL-------SSDSWKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGV  171 (202)
Q Consensus       105 ~~~D~~-------~~~~~~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~~  171 (202)
                      +.+|+.       +.+.+.++++++|+|||+|+..+   ++...+++|+.|+.+++++|++. ++++||++|| .+||.
T Consensus        89 i~GDl~~~~LGLs~~~~~~~l~~~vD~ViH~AA~v~~~~~~~~~~~~Nv~gt~~ll~~a~~~~~~k~~V~vST~~vyG~  167 (491)
T PLN02996         89 VPGDISYDDLGVKDSNLREEMWKEIDIVVNLAATTNFDERYDVALGINTLGALNVLNFAKKCVKVKMLLHVSTAYVCGE  167 (491)
T ss_pred             EecccCCcCCCCChHHHHHHHHhCCCEEEECccccCCcCCHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeeeEEecC
Confidence            999998       44557788889999999999754   23457789999999999999885 6889999999 66653

>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase

Probab=99.84  E-value=4.4e-20  Score=150.00  Aligned_cols=137  Identities=20%  Similarity=0.235  Sum_probs=107.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCC----cccc-cCCCceeEEEccCCCHhhHHHHhcC--ccEeEEc
Q 028890           58 KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRS----SLRD-SWANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~----~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~  128 (202)
                      +|+||||+|+||++++++|+++|  ++|++++|....    .... ....+++++.+|+.|++++.+++++  +|+|||+
T Consensus         1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~   80 (317)
T TIGR01181         1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGDRELVSRLFTEHQPDAVVHF   80 (317)
T ss_pred             CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcCHHHHHHHHhhcCCCEEEEc
Confidence            58999999999999999999987  789988764211    1111 1124688999999999999999987  8999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcCC-----------cCCcchHHHHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVAN-----------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~~E~~  189 (202)
                      |+...      .+...+++|+.++.+++++|.+.+.+ ++|++|| .+|+...           .+.+.|+.+|..+|.+
T Consensus        81 a~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~  160 (317)
T TIGR01181        81 AAESHVDRSISGPAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTETTPLAPSSPYSASKAASDHL  160 (317)
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCCCCCCCCCCchHHHHHHHHHH
Confidence            98643      23456789999999999999887544 8999999 5665321           2345799999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       161 ~~~~~  165 (317)
T TIGR01181       161 VRAYH  165 (317)
T ss_pred             HHHHH
Confidence            98763

This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.

>PRK05993 short chain dehydrogenase; Provisional

Probab=99.84  E-value=4.3e-20  Score=148.24  Aligned_cols=139  Identities=14%  Similarity=0.034  Sum_probs=107.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--------CccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--------GVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--------~~d~vi  126 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+.+... .....+++++.+|++|+++++++++        ++|++|
T Consensus         3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~-~l~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li   81 (277)
T PRK05993          3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVA-ALEAEGLEAFQLDYAEPESIAALVAQVLELSGGRLDALF   81 (277)
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH-HHHHCCceEEEccCCCHHHHHHHHHHHHHHcCCCccEEE
Confidence            4578999999999999999999999999999999865421 1122467889999999988777654        479999


Q ss_pred             EccccCCC----------CccchhhhHHHHH----HHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFGS----------NSYMYKINGTANI----NAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~~----------~~~~~~~n~~~~~----~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||....          +...+++|+.|+.    .+++.+++.+.++||++||.....+......|+.+|++.|.+++.
T Consensus        82 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~  161 (277)
T PRK05993         82 NNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQGRIVQCSSILGLVPMKYRGAYNASKFAIEGLSLT  161 (277)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCCEEEEECChhhcCCCCccchHHHHHHHHHHHHHH
Confidence            99985321          1346789998854    566667777778999999932223344567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       162 l~  163 (277)
T PRK05993        162 LR  163 (277)
T ss_pred             HH
Confidence            53

>PRK06398 aldose dehydrogenase; Validated

Probab=99.84  E-value=1.1e-19  Score=144.36  Aligned_cols=135  Identities=11%  Similarity=0.114  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+....      .++.++.+|+.|++++.++++       ++|++|
T Consensus         4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~~------~~~~~~~~D~~~~~~i~~~~~~~~~~~~~id~li   77 (258)
T PRK06398          4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPSY------NDVDYFKVDVSNKEQVIKGIDYVISKYGRIDILV   77 (258)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCcccc------CceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4578999999999999999999999999999999875432      368899999999998887765       589999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          ++...+++|+.++..+++++.    +.+.+++|++||.....+......|+.+|.+.+.+.+.
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaal~~~~~~  157 (258)
T PRK06398         78 NNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKGVIINIASVQSFAVTRNAAAYVTSKHAVLGLTRS  157 (258)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEeCcchhccCCCCCchhhhhHHHHHHHHHH
Confidence            9999532          123457899999998877764    34557999999943333445667899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       158 la  159 (258)
T PRK06398        158 IA  159 (258)
T ss_pred             HH
Confidence            64

>PRK06179 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.1e-19  Score=145.18  Aligned_cols=135  Identities=18%  Similarity=0.168  Sum_probs=108.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC-------ccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG-------VTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-------~d~vi~  127 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+......   ..+++++++|+.|++++++++++       +|++||
T Consensus         3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~~d~li~   79 (270)
T PRK06179          3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP---IPGVELLELDVTDDASVQAAVDEVIARAGRIDVLVN   79 (270)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc---cCCCeeEEeecCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            45789999999999999999999999999999998644221   24788999999999998888763       799999


Q ss_pred             ccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          128 CVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       128 ~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||...          ++...+++|+.++.++++++    ++.+.++||++||. .+. +.+....|+.+|.+.+.+++.
T Consensus        80 ~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~-~~~~~~~Y~~sK~a~~~~~~~  158 (270)
T PRK06179         80 NAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSGRIINISSVLGFL-PAPYMALYAASKHAVEGYSES  158 (270)
T ss_pred             CCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEECCccccC-CCCCccHHHHHHHHHHHHHHH
Confidence            999643          12456789999998887774    56677899999993 332 333456899999999998887


Q ss_pred             h
Q 028890          193 Q  193 (202)
Q Consensus       193 ~  193 (202)
                      +
T Consensus       159 l  159 (270)
T PRK06179        159 L  159 (270)
T ss_pred             H
Confidence            5

>PRK06194 hypothetical protein; Provisional

Probab=99.83  E-value=8.1e-20  Score=147.09  Aligned_cols=139  Identities=12%  Similarity=0.078  Sum_probs=106.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c--cCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~--~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+......   .  ....++.++.+|++|++++.++++       ++
T Consensus         5 ~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~i   84 (287)
T PRK06194          5 AGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEALADAALERFGAV   84 (287)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999987543111   0  113467889999999999888776       47


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCC------CEEEEEecc-ccCcCCcCCcchHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGV------KRFVYISAA-DFGVANYLLQGYYE  181 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~------~~~v~~SS~-~~~~~~~~~~~Y~~  181 (202)
                      |+||||||....          +...+++|+.++.+++++    +.+.+.      +++|++||. .+. +......|+.
T Consensus        85 d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-~~~~~~~Y~~  163 (287)
T PRK06194         85 HLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNTASMAGLL-APPAMGIYNV  163 (287)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhcc-CCCCCcchHH
Confidence            999999996431          133578999999987776    444433      589999993 332 3345578999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.|.+++.+.
T Consensus       164 sK~a~~~~~~~l~  176 (287)
T PRK06194        164 SKHAVVSLTETLY  176 (287)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional

Probab=99.83  E-value=3.2e-20  Score=150.99  Aligned_cols=130  Identities=20%  Similarity=0.273  Sum_probs=96.0

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH---hh-HHHHhc-----CccEeEEcc
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DS-WKEALD-----GVTAVISCV  129 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~---~~-~~~~~~-----~~d~vi~~a  129 (202)
                      |+||||+||||++|+++|+++|++++++.|+......     ...+..+|+.|.   +. +.++++     ++|+|||+|
T Consensus         2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~d~Vih~A   76 (308)
T PRK11150          2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK-----FVNLVDLDIADYMDKEDFLAQIMAGDDFGDIEAIFHEG   76 (308)
T ss_pred             EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcchH-----HHhhhhhhhhhhhhHHHHHHHHhcccccCCccEEEECc
Confidence            7999999999999999999999987777665432110     112334566553   33 333332     689999999


Q ss_pred             ccCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          130 GGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       130 ~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      |...    +....++.|+.++.+++++|++.++ +|||+|| .+|+...          .+.++|+.+|.++|++++.|.
T Consensus        77 ~~~~~~~~~~~~~~~~n~~~t~~ll~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  155 (308)
T PRK11150         77 ACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTDDFIEEREYEKPLNVYGYSKFLFDEYVRQIL  155 (308)
T ss_pred             eecCCcCCChHHHHHHHHHHHHHHHHHHHHcCC-cEEEEcchHHhCcCCCCCCccCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            8533    2234678899999999999999887 7999999 6777431          245689999999999998873

>PLN02778 3,5-epimerase/4-reductase

Probab=99.83  E-value=1.1e-19  Score=147.40  Aligned_cols=122  Identities=18%  Similarity=0.271  Sum_probs=92.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~  131 (202)
                      ...|+|+||||+||||++|++.|+++|++|+...                   .|+.|.+.+...++  ++|+|||+||.
T Consensus         7 ~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~~-------------------~~~~~~~~v~~~l~~~~~D~ViH~Aa~   67 (298)
T PLN02778          7 SATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYGS-------------------GRLENRASLEADIDAVKPTHVFNAAGV   67 (298)
T ss_pred             CCCCeEEEECCCCHHHHHHHHHHHhCCCEEEEec-------------------CccCCHHHHHHHHHhcCCCEEEECCcc
Confidence            3557999999999999999999999999987532                   23445555665555  68999999997


Q ss_pred             CCC---------CccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCc------------C-C----cCCcchHHHHHH
Q 028890          132 FGS---------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV------------A-N----YLLQGYYEGKVL  185 (202)
Q Consensus       132 ~~~---------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~------------~-~----~~~~~Y~~sK~~  185 (202)
                      .+.         +...+++|+.++.+++++|++.+++++++.|+++|+.            . .    .+.++|+.+|.+
T Consensus        68 ~~~~~~~~~~~~p~~~~~~Nv~gt~~ll~aa~~~gv~~v~~sS~~vy~~~~~~p~~~~~~~~Ee~~p~~~~s~Yg~sK~~  147 (298)
T PLN02778         68 TGRPNVDWCESHKVETIRANVVGTLTLADVCRERGLVLTNYATGCIFEYDDAHPLGSGIGFKEEDTPNFTGSFYSKTKAM  147 (298)
T ss_pred             cCCCCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEecceEeCCCCCCCcccCCCCCcCCCCCCCCCchHHHHHH
Confidence            532         2346789999999999999999986555444454431            0 0    123689999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      +|.+++.|.
T Consensus       148 ~E~~~~~y~  156 (298)
T PLN02778        148 VEELLKNYE  156 (298)
T ss_pred             HHHHHHHhh
Confidence            999999875

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=99.83  E-value=2.7e-19  Score=134.97  Aligned_cols=124  Identities=35%  Similarity=0.459  Sum_probs=105.8

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCccc
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYM  138 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~  138 (202)
                      |+|+||||++|++++++|+++|++|+++.|++.+...   ..+++++.+|+.|++++.++++++|+||++++....    
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~~----   73 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPPK----   73 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTTT----
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhhhcc----
Confidence            7999999999999999999999999999999765322   689999999999999999999999999999986443    


Q ss_pred             hhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcC--------CcchHHHHHHHHHHHHH
Q 028890          139 YKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYL--------LQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       139 ~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~--------~~~Y~~sK~~~E~~~~~  192 (202)
                         +.....++++++++.+++++|++|+ ..++.....        ...|...|..+|++++.
T Consensus        74 ---~~~~~~~~~~a~~~~~~~~~v~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~  133 (183)
T PF13460_consen   74 ---DVDAAKNIIEAAKKAGVKRVVYLSSAGVYRDPPGLFSDEDKPIFPEYARDKREAEEALRE  133 (183)
T ss_dssp             ---HHHHHHHHHHHHHHTTSSEEEEEEETTGTTTCTSEEEGGTCGGGHHHHHHHHHHHHHHHH
T ss_pred             ---cccccccccccccccccccceeeeccccCCCCCcccccccccchhhhHHHHHHHHHHHHh
Confidence               2777889999999999999999999 555533221        24689999999998875

...

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.83  E-value=6.9e-20  Score=163.03  Aligned_cols=139  Identities=22%  Similarity=0.208  Sum_probs=108.8

Q ss_pred             CeEEEEccCChhHHHHHHHHH--HCCCeEEEEecCCCCccc----c-cCCCceeEEEccCCCH------hhHHHHhcCcc
Q 028890           57 EKLLVLGGNGFVGSHICREAL--DRGLTVASLSRSGRSSLR----D-SWANNVIWHQGNLLSS------DSWKEALDGVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll--~~g~~V~~l~r~~~~~~~----~-~~~~~~~~~~~D~~~~------~~~~~~~~~~d  123 (202)
                      |+|+||||+||||++++++|+  +.|++|++++|+......    . ....+++++.+|+.|+      +.+.++ +++|
T Consensus         1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~~~~~v~~~~~Dl~~~~~~~~~~~~~~l-~~~D   79 (657)
T PRK07201          1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYWGADRVVPLVGDLTEPGLGLSEADIAEL-GDID   79 (657)
T ss_pred             CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhcCCCcEEEEecccCCccCCcCHHHHHHh-cCCC
Confidence            589999999999999999999  579999999996532111    0 1125789999999984      456665 8999


Q ss_pred             EeEEccccCC---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC------------cCCcchHHHHHHHH
Q 028890          124 AVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN------------YLLQGYYEGKVLSS  187 (202)
Q Consensus       124 ~vi~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~------------~~~~~Y~~sK~~~E  187 (202)
                      +|||||+...   .....+++|+.++.+++++|++.++++|||+|| .+|+...            .+.++|+.+|+.+|
T Consensus        80 ~Vih~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~~SS~~v~g~~~~~~~e~~~~~~~~~~~~Y~~sK~~~E  159 (657)
T PRK07201         80 HVVHLAAIYDLTADEEAQRAANVDGTRNVVELAERLQAATFHHVSSIAVAGDYEGVFREDDFDEGQGLPTPYHRTKFEAE  159 (657)
T ss_pred             EEEECceeecCCCCHHHHHHHHhHHHHHHHHHHHhcCCCeEEEEeccccccCccCccccccchhhcCCCCchHHHHHHHH
Confidence            9999999654   234467899999999999999999999999999 5665321            12367999999999


Q ss_pred             HHHHHhccc
Q 028890          188 DVAACQSVL  196 (202)
Q Consensus       188 ~~~~~~~~l  196 (202)
                      +++++..++
T Consensus       160 ~~~~~~~g~  168 (657)
T PRK07201        160 KLVREECGL  168 (657)
T ss_pred             HHHHHcCCC
Confidence            999865443

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.83  E-value=1.2e-19  Score=143.88  Aligned_cols=141  Identities=20%  Similarity=0.130  Sum_probs=106.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+|+||++++++|+++|++|+++.++...........++.++.+|+.|++++.++++       ++|++|
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~li   84 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREKGVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVLV   84 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3568999999999999999999999999999887664432222212357899999999998887765       579999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHH----HHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIR----AASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      ||||...          ++...+++|+.++..+.+    .+++.+.+++|++|| ..++.+......|+.+|.+.+.+++
T Consensus        85 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~  164 (255)
T PRK06463         85 NNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNGAIVNIASNAGIGTAAEGTTFYAITKAGIIILTR  164 (255)
T ss_pred             ECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHhCCCCCCCccHhHHHHHHHHHHHH
Confidence            9998632          123467889999765544    444455679999999 4454444556789999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       165 ~la  167 (255)
T PRK06463        165 RLA  167 (255)
T ss_pred             HHH
Confidence            864

>PRK07856 short chain dehydrogenase; Provisional

Probab=99.83  E-value=1.9e-19  Score=142.41  Aligned_cols=138  Identities=19%  Similarity=0.188  Sum_probs=109.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+....   ....++.++++|+.|++++.++++       ++|++|
T Consensus         4 ~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   80 (252)
T PRK07856          4 LTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPET---VDGRPAEFHAADVRDPDQVAALVDAIVERHGRLDVLV   80 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhhh---hcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3578999999999999999999999999999999976431   123578899999999998887775       469999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      ||||...          .+...+++|+.++..+++++..     .+.++||++||.....+......|+.+|.+.|.+++
T Consensus        81 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~l~~  160 (252)
T PRK07856         81 NNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGGSIVNIGSVSGRRPSPGTAAYGAAKAGLLNLTR  160 (252)
T ss_pred             ECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcccccCCCCCCCchhHHHHHHHHHHHH
Confidence            9998532          1235678999999999888753     234689999994333344556789999999999998


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       161 ~la  163 (252)
T PRK07856        161 SLA  163 (252)
T ss_pred             HHH
Confidence            864

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=99.83  E-value=1.2e-19  Score=139.63  Aligned_cols=140  Identities=13%  Similarity=0.065  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCC-CceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWA-NNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~-~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++|.++||||+++||.++++.|.++|++|++..|+.+...  ..... ..+..+..|++|.++++.+++       ++|
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~~~g~iD   83 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPEEFGRID   83 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHHhhCccc
Confidence            35689999999999999999999999999999999976521  11122 568899999999988666554       589


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++|||||..-          +|+.++++|+.|.++..++.    .+++.+++|.+||.....+.+..+.|+.+|+++..+
T Consensus        84 iLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G~IiN~~SiAG~~~y~~~~vY~ATK~aV~~f  163 (246)
T COG4221          84 ILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAF  163 (246)
T ss_pred             EEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCceEEEeccccccccCCCCccchhhHHHHHHH
Confidence            9999999532          46789999999998776664    566667999999954344445557899999999887


Q ss_pred             HHHh
Q 028890          190 AACQ  193 (202)
Q Consensus       190 ~~~~  193 (202)
                      ....
T Consensus       164 s~~L  167 (246)
T COG4221         164 SLGL  167 (246)
T ss_pred             HHHH
Confidence            6653

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.82  E-value=1.6e-19  Score=143.16  Aligned_cols=141  Identities=16%  Similarity=0.116  Sum_probs=107.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|++.....     .....++.++++|++|++++.++++       +
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGIDKVAERFGS   84 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999998643211     1123467889999999998887765       3


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHH----HHHHHHHH-HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTA----NINAIRAA-SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~----~~~~~~~~-~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|+||||+|....          +...+++|+.+    +..+++.+ ++.+.++||++||............|+.+|.+.
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a~  164 (262)
T PRK13394         85 VDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGGVVIYMGSVHSHEASPLKSAYVTAKHGL  164 (262)
T ss_pred             CCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCcEEEEEcchhhcCCCCCCcccHHHHHHH
Confidence            8999999996431          23456688888    44566666 666778999999942223334457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       165 ~~~~~~la  172 (262)
T PRK13394        165 LGLARVLA  172 (262)
T ss_pred             HHHHHHHH
Confidence            99888763

>PRK05717 oxidoreductase; Validated

Probab=99.82  E-value=2.2e-19  Score=142.28  Aligned_cols=142  Identities=10%  Similarity=0.033  Sum_probs=108.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|+..+...  .....++.++.+|++|++++.++++       .+|
T Consensus         7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id   86 (255)
T PRK05717          7 GHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGRLD   86 (255)
T ss_pred             ccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            4567899999999999999999999999999999887543211  1123468899999999988766554       479


Q ss_pred             EeEEccccCCC------------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFGS------------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|||||....            +...+++|+.++.++++++.+   ...+++|++||.....+......|+.+|.+.+.
T Consensus        87 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~ii~~sS~~~~~~~~~~~~Y~~sKaa~~~  166 (255)
T PRK05717         87 ALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNGAIVNLASTRARQSEPDTEAYAASKGGLLA  166 (255)
T ss_pred             EEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCcEEEEEcchhhcCCCCCCcchHHHHHHHHH
Confidence            99999996431            135678999999999999853   223689999983222233445789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       167 ~~~~la  172 (255)
T PRK05717        167 LTHALA  172 (255)
T ss_pred             HHHHHH
Confidence            988764

>PRK06182 short chain dehydrogenase; Validated

Probab=99.82  E-value=1.2e-19  Score=145.14  Aligned_cols=138  Identities=17%  Similarity=0.106  Sum_probs=105.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~  127 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+.++. ......+++++.+|++|++++.++++       ++|++||
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l-~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~   80 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKM-EDLASLGVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVN   80 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            367999999999999999999999999999999986532 11112458899999999999888776       6899999


Q ss_pred             ccccCCC----------CccchhhhHHHHHHH----HHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          128 CVGGFGS----------NSYMYKINGTANINA----IRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       128 ~a~~~~~----------~~~~~~~n~~~~~~~----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |||....          +...+++|+.++..+    ++.+++.+.+++|++||.....+.+....|+.+|.+.+.+.+.+
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~l  160 (273)
T PRK06182         81 NAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSGRIINISSMGGKIYTPLGAWYHATKFALEGFSDAL  160 (273)
T ss_pred             CCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhcCCCCCccHhHHHHHHHHHHHHHH
Confidence            9996431          245678898886544    45566677789999999322222333457999999999987754

>PRK07023 short chain dehydrogenase; Provisional

Probab=99.82  E-value=1.8e-19  Score=141.79  Aligned_cols=140  Identities=18%  Similarity=0.150  Sum_probs=106.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-----------CccE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----------GVTA  124 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----------~~d~  124 (202)
                      +++++||||+|+||++++++|+++|++|++++|+...........++.++++|+.|+++++++++           .+|+
T Consensus         1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (243)
T PRK07023          1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVELDLSDAAAAAAWLAGDLLAAFVDGASRVL   80 (243)
T ss_pred             CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchhhhhccCCeEEEEEeccCCHHHHHHHHHHHHHHHhccCCCceE
Confidence            46899999999999999999999999999999986543222223468899999999998877432           4789


Q ss_pred             eEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||+|....           +...+++|+.++..+.+.+    .+.+.+++|++||.....+..+...|+.+|.+.|.+
T Consensus        81 ~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~  160 (243)
T PRK07023         81 LINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAERRILHISSGAARNAYAGWSVYCATKAALDHH  160 (243)
T ss_pred             EEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCCEEEEEeChhhcCCCCCchHHHHHHHHHHHH
Confidence            9999986431           1345688999877665554    344557999999943333445567899999999999


Q ss_pred             HHHhcc
Q 028890          190 AACQSV  195 (202)
Q Consensus       190 ~~~~~~  195 (202)
                      ++.++.
T Consensus       161 ~~~~~~  166 (243)
T PRK07023        161 ARAVAL  166 (243)
T ss_pred             HHHHHh
Confidence            997753

>PRK07806 short chain dehydrogenase; Provisional

Probab=99.82  E-value=3.8e-19  Score=140.18  Aligned_cols=139  Identities=18%  Similarity=0.188  Sum_probs=107.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       +
T Consensus         5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (248)
T PRK07806          5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG   84 (248)
T ss_pred             CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999999999999987533111      1113467889999999998877665       5


Q ss_pred             ccEeEEccccCC----CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEecc-cc--Cc--CCcCCcchHHHHHHHHHHH
Q 028890          122 VTAVISCVGGFG----SNSYMYKINGTANINAIRAASEK--GVKRFVYISAA-DF--GV--ANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       122 ~d~vi~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~-~~--~~--~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|++|||||...    ++...+++|+.++.++++++.+.  ..+++|++||. ..  +.  ......+|+.+|.++|.++
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~~~~Y~~sK~a~e~~~  164 (248)
T PRK07806         85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIPTVKTMPEYEPVARSKRAGEDAL  164 (248)
T ss_pred             CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCccccCCccccHHHHHHHHHHHHH
Confidence            899999998532    34567889999999999999764  23589999983 21  11  1122468999999999999


Q ss_pred             HHh
Q 028890          191 ACQ  193 (202)
Q Consensus       191 ~~~  193 (202)
                      +.+
T Consensus       165 ~~l  167 (248)
T PRK07806        165 RAL  167 (248)
T ss_pred             HHH
Confidence            886

>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase

Probab=99.82  E-value=2.2e-19  Score=144.51  Aligned_cols=119  Identities=24%  Similarity=0.338  Sum_probs=100.5

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCc--cEeEEccccCCC-
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGV--TAVISCVGGFGS-  134 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~--d~vi~~a~~~~~-  134 (202)
                      +|+||||+|+||++++++|+++|++|++++|.                .+|+.|++++.+++++.  |+|||+|+.... 
T Consensus         1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~----------------~~d~~~~~~~~~~~~~~~~d~vi~~a~~~~~~   64 (287)
T TIGR01214         1 RILITGANGQLGRELVQQLSPEGRVVVALTSS----------------QLDLTDPEALERLLRAIRPDAVVNTAAYTDVD   64 (287)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc----------------ccCCCCHHHHHHHHHhCCCCEEEECCcccccc
Confidence            58999999999999999999999999999885                46999999999999865  999999986432 


Q ss_pred             -----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHHHh
Q 028890          135 -----NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       135 -----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                           +...+++|+.++.++++++++.+. +||++|| ++|+..          ..+.+.|+.+|..+|++++.+
T Consensus        65 ~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~Ss~~vy~~~~~~~~~E~~~~~~~~~Y~~~K~~~E~~~~~~  138 (287)
T TIGR01214        65 GAESDPEKAFAVNALAPQNLARAAARHGA-RLVHISTDYVFDGEGKRPYREDDATNPLNVYGQSKLAGEQAIRAA  138 (287)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeeeeecCCCCCCCCCCCCCCCcchhhHHHHHHHHHHHHh
Confidence                 234678999999999999998875 8999999 666532          124568999999999999876

This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.

>PRK05866 short chain dehydrogenase; Provisional

Probab=99.82  E-value=2.1e-19  Score=145.50  Aligned_cols=140  Identities=19%  Similarity=0.192  Sum_probs=107.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     ......+.++.+|+.|++++.++++       +
T Consensus        38 ~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~  117 (293)
T PRK05866         38 LTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLSDLDAVDALVADVEKRIGG  117 (293)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999998643111     0112457889999999998888776       6


Q ss_pred             ccEeEEccccCCC------------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcchHHHHH
Q 028890          122 VTAVISCVGGFGS------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       122 ~d~vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~  184 (202)
                      +|++|||||....            ....+++|+.++.++++++    ++.+.+++|++|| +.+.........|+.+|+
T Consensus       118 id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~p~~~~Y~asKa  197 (293)
T PRK05866        118 VDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDGHIINVATWGVLSEASPLFSVYNASKA  197 (293)
T ss_pred             CCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCCcchHHHHHH
Confidence            8999999996421            1235678999988777765    4566679999999 333323345578999999


Q ss_pred             HHHHHHHHh
Q 028890          185 LSSDVAACQ  193 (202)
Q Consensus       185 ~~E~~~~~~  193 (202)
                      +.+.+++.+
T Consensus       198 al~~l~~~l  206 (293)
T PRK05866        198 ALSAVSRVI  206 (293)
T ss_pred             HHHHHHHHH
Confidence            999988875

>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1

Probab=99.82  E-value=1.2e-19  Score=146.49  Aligned_cols=120  Identities=28%  Similarity=0.386  Sum_probs=94.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~-  133 (202)
                      |||+|||++|++|++|.++|.++|++|+++.|.                ..|+.|.+.+.+.+.  ++|+|||||+... 
T Consensus         1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~   64 (286)
T PF04321_consen    1 MRILITGASGFLGSALARALKERGYEVIATSRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNV   64 (286)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT----------------CS-TTSHHHHHHHHHHH--SEEEE------H
T ss_pred             CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch----------------hcCCCCHHHHHHHHHHhCCCeEeccceeecH
Confidence            699999999999999999999999999999776                468999999998887  4899999998754 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc----------CCcCCcchHHHHHHHHHHHHHh
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV----------ANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~----------~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                           ++...+.+|+.++.+++++|.+.+. ++||+|| .+|+.          .+.|.+.||.+|..+|+.+++.
T Consensus        65 ~~ce~~p~~a~~iN~~~~~~la~~~~~~~~-~li~~STd~VFdG~~~~~y~E~d~~~P~~~YG~~K~~~E~~v~~~  139 (286)
T PF04321_consen   65 DACEKNPEEAYAINVDATKNLAEACKERGA-RLIHISTDYVFDGDKGGPYTEDDPPNPLNVYGRSKLEGEQAVRAA  139 (286)
T ss_dssp             HHHHHSHHHHHHHHTHHHHHHHHHHHHCT--EEEEEEEGGGS-SSTSSSB-TTS----SSHHHHHHHHHHHHHHHH
T ss_pred             HhhhhChhhhHHHhhHHHHHHHHHHHHcCC-cEEEeeccEEEcCCcccccccCCCCCCCCHHHHHHHHHHHHHHHh
Confidence                 4567889999999999999999886 9999999 66642          2335678999999999999874

1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.

>TIGR01746 Thioester-redct thioester reductase domain

Probab=99.82  E-value=1.3e-19  Score=149.83  Aligned_cols=137  Identities=21%  Similarity=0.309  Sum_probs=107.6

Q ss_pred             eEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcc-----c---------c-cCC-CceeEEEccCCCH------h
Q 028890           58 KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL-----R---------D-SWA-NNVIWHQGNLLSS------D  113 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~-----~---------~-~~~-~~~~~~~~D~~~~------~  113 (202)
                      +|+|||||||||++++++|+++|  ++|+|++|+.....     .         . ... .+++++.+|++++      +
T Consensus         1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~gl~~~   80 (367)
T TIGR01746         1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSEPRLGLSDA   80 (367)
T ss_pred             CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCcccCCcCHH
Confidence            58999999999999999999998  67999999865210     0         0 001 5789999998753      5


Q ss_pred             hHHHHhcCccEeEEccccCC---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------c
Q 028890          114 SWKEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------Y  174 (202)
Q Consensus       114 ~~~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------------~  174 (202)
                      .+..+.+++|+|||||+...   +....+++|+.++.+++++|.+.++++|+++|| ++++...               .
T Consensus        81 ~~~~~~~~~d~vih~a~~~~~~~~~~~~~~~nv~g~~~ll~~a~~~~~~~~v~iSS~~v~~~~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR01746        81 EWERLAENVDTIVHNGALVNWVYPYSELRAANVLGTREVLRLAASGRAKPLHYVSTISVLAAIDLSTVTEDDAIVTPPPG  160 (367)
T ss_pred             HHHHHHhhCCEEEeCCcEeccCCcHHHHhhhhhHHHHHHHHHHhhCCCceEEEEccccccCCcCCCCccccccccccccc
Confidence            67777789999999999754   234456799999999999999998889999999 5554311               1


Q ss_pred             CCcchHHHHHHHHHHHHHhc
Q 028890          175 LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.++|+.+|+.+|.+++.+.
T Consensus       161 ~~~~Y~~sK~~~E~~~~~~~  180 (367)
T TIGR01746       161 LAGGYAQSKWVAELLVREAS  180 (367)
T ss_pred             cCCChHHHHHHHHHHHHHHH
Confidence            23579999999999998764

It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=99.81  E-value=3e-19  Score=153.65  Aligned_cols=140  Identities=24%  Similarity=0.279  Sum_probs=110.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc--------------cCCCceeEEEccCCCHhhHHHHh
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--------------SWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~--------------~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      .++++|+||||+|+||++++++|+++|++|++++|+..+....              ....+++++.+|+.|.+++.+++
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL  157 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL  157 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence            4678999999999999999999999999999999986542110              00135889999999999999999


Q ss_pred             cCccEeEEccccCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEecccc---CcCC---cCCcchHHHHHHHHHH
Q 028890          120 DGVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISAADF---GVAN---YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       120 ~~~d~vi~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~---~~~~---~~~~~Y~~sK~~~E~~  189 (202)
                      .++|+||||+|...    ++...+++|+.|+.+++++|++.++++||++||...   +...   .....|...|..+|+.
T Consensus       158 ggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgRIV~VSSiga~~~g~p~~~~~sk~~~~~~KraaE~~  237 (576)
T PLN03209        158 GNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNHFILVTSLGTNKVGFPAAILNLFWGVLCWKRKAEEA  237 (576)
T ss_pred             cCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCEEEEEccchhcccCccccchhhHHHHHHHHHHHHHH
Confidence            99999999998653    234467889999999999999999999999999321   1111   1124577788888888


Q ss_pred             HHHh
Q 028890          190 AACQ  193 (202)
Q Consensus       190 ~~~~  193 (202)
                      +..+
T Consensus       238 L~~s  241 (576)
T PLN03209        238 LIAS  241 (576)
T ss_pred             HHHc
Confidence            7753

>TIGR01179 galE UDP-glucose-4-epimerase

Probab=99.81  E-value=6e-19  Score=143.88  Aligned_cols=137  Identities=27%  Similarity=0.437  Sum_probs=108.3

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc---c-CCCceeEEEccCCCHhhHHHHhc--CccEeEEcccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD---S-WANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~---~-~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~  131 (202)
                      +|+||||+|+||++++++|+++|++|++++|........   . ...+++++.+|+.+++++.++++  ++|+||||||.
T Consensus         1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vv~~ag~   80 (328)
T TIGR01179         1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPEALKRGERITRVTFVEGDLRDRELLDRLFEEHKIDAVIHFAGL   80 (328)
T ss_pred             CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchhhhhhhccccceEEEECCCCCHHHHHHHHHhCCCcEEEECccc
Confidence            589999999999999999999999999887543221110   0 01257788999999999999886  69999999996


Q ss_pred             CC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..      .+...++.|+.++.+++++|.+.+++++|++|| ..|+...          .+.+.|+.+|.++|.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~ss~~~~g~~~~~~~~e~~~~~~~~~y~~sK~~~e~~~~~~~  160 (328)
T TIGR01179        81 IAVGESVQDPLKYYRNNVVNTLNLLEAMQQTGVKKFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRSKLMSERILRDLS  160 (328)
T ss_pred             cCcchhhcCchhhhhhhHHHHHHHHHHHHhcCCCEEEEecchhhcCCCCCCCccccCCCCCCCchHHHHHHHHHHHHHHH
Confidence            42      234567889999999999999998899999998 5565321          234679999999999988763

This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.

>PRK06523 short chain dehydrogenase; Provisional

Probab=99.81  E-value=5.8e-19  Score=140.10  Aligned_cols=137  Identities=18%  Similarity=0.208  Sum_probs=106.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+....    ...++.++.+|+.|++++.++++       ++|++|
T Consensus         7 ~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   82 (260)
T PRK06523          7 LAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD----LPEGVEFVAADLTTAEGCAAVARAVLERLGGVDILV   82 (260)
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh----cCCceeEEecCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999999999999999999999999999999976432    13468899999999988776553       589999


Q ss_pred             EccccCC------------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcchHHHHHHHHHH
Q 028890          127 SCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       127 ~~a~~~~------------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ||||...            ++...+++|+.++.++.+++    ++.+.+++|++|| ..+.........|+.+|.+.+.+
T Consensus        83 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~~Y~~sK~a~~~l  162 (260)
T PRK06523         83 HVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSGVIIHVTSIQRRLPLPESTTAYAAAKAALSTY  162 (260)
T ss_pred             ECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCCcchhHHHHHHHHHH
Confidence            9999532            12346788999998776554    4455678999999 33332233567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       163 ~~~~a  167 (260)
T PRK06523        163 SKSLS  167 (260)
T ss_pred             HHHHH
Confidence            88764

>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase

Probab=99.81  E-value=3e-19  Score=145.31  Aligned_cols=132  Identities=20%  Similarity=0.256  Sum_probs=102.5

Q ss_pred             EEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc----CccEeEEccccCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGGFG  133 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~vi~~a~~~~  133 (202)
                      |+||||+|+||+++++.|+++|+ +|++++|........  ......+..|+.+++.++.+.+    ++|+|||+|+...
T Consensus         1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~D~vvh~A~~~~   78 (314)
T TIGR02197         1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGHKFL--NLADLVIADYIDKEDFLDRLEKGAFGKIEAIFHQGACSD   78 (314)
T ss_pred             CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCchhhh--hhhheeeeccCcchhHHHHHHhhccCCCCEEEECccccC
Confidence            68999999999999999999998 788887654322111  1112456778888887777664    7999999998643


Q ss_pred             ----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHHHh
Q 028890          134 ----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       134 ----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                          ++...+++|+.++.+++++|++.++ +||++|| .+|+..          ..+.+.|+.+|..+|++++.|
T Consensus        79 ~~~~~~~~~~~~n~~~~~~ll~~~~~~~~-~~v~~SS~~vy~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~~~~  152 (314)
T TIGR02197        79 TTETDGEYMMENNYQYSKRLLDWCAEKGI-PFIYASSAATYGDGEAGFREGRELERPLNVYGYSKFLFDQYVRRR  152 (314)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHhCC-cEEEEccHHhcCCCCCCcccccCcCCCCCHHHHHHHHHHHHHHHH
Confidence                3345678999999999999999886 8999999 677632          125678999999999999875

This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=99.81  E-value=4.1e-19  Score=139.85  Aligned_cols=141  Identities=18%  Similarity=0.126  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|++|.+++++|+++|++|++++|+..+...     .....++.++.+|+.|++++.++++       .
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVAAGVEDFGR   83 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            456899999999999999999999999999999998543111     1112458899999999999888775       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|+||||+|....          +...+++|+.++.++++++    .+.+.++||++|| ..++.+......|+.+|.++
T Consensus        84 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~~y~~sK~a~  163 (251)
T PRK12826         84 LDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGGRIVLTSSVAGPRVGYPGLAHYAASKAGL  163 (251)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechHhhccCCCCccHHHHHHHHH
Confidence            8999999986542          1335678899999888876    3456789999999 33324445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       164 ~~~~~~~~  171 (251)
T PRK12826        164 VGFTRALA  171 (251)
T ss_pred             HHHHHHHH
Confidence            99988753

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=99.81  E-value=3.3e-19  Score=141.04  Aligned_cols=140  Identities=14%  Similarity=0.086  Sum_probs=106.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++||||+|+||++++++|+++|++|++++|++.+...     .....++.++.+|+.|++++.++++       ++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~   82 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGIDYAVETFGGV   82 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            45799999999999999999999999999999998654211     1123578899999999998887776       58


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHH----HHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAI----RAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |+||||+|....          ....+++|+.++.+++    +.+++.+.++||++||.....+..+.+.|+.+|.+.+.
T Consensus        83 d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~~k~a~~~  162 (258)
T PRK12429         83 DILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGGRIINMASVHGLVGSAGKAAYVSAKHGLIG  162 (258)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCcchhHHHHHHHHH
Confidence            999999985432          1235678888865554    44555677899999994222344556889999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       163 ~~~~l~  168 (258)
T PRK12429        163 LTKVVA  168 (258)
T ss_pred             HHHHHH
Confidence            888763

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=99.81  E-value=8.7e-19  Score=138.79  Aligned_cols=141  Identities=21%  Similarity=0.241  Sum_probs=106.7

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCC-HhhHHHHh-cCccEeEEc
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLS-SDSWKEAL-DGVTAVISC  128 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~-~~~~~~~~-~~~d~vi~~  128 (202)
                      .+.++|+|+||||+|+||++++++|+++|++|+++.|+++..... ....+++++.+|+.| .+.+.+.+ .++|+||++
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~   92 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICA   92 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEEC
Confidence            445678999999999999999999999999999999986542111 112468999999998 46777777 689999999


Q ss_pred             cccCC--CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc-C-C---------cchHHHHHHHHHHHHH
Q 028890          129 VGGFG--SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY-L-L---------QGYYEGKVLSSDVAAC  192 (202)
Q Consensus       129 a~~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~-~-~---------~~Y~~sK~~~E~~~~~  192 (202)
                      +|...  +....+++|..++.++++++++.++++||++|| .+|+.... + .         ..|...|..+|++++.
T Consensus        93 ~g~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~~~iV~iSS~~v~g~~~~~~~~~~~~~~~~~~~~~~~k~~~e~~l~~  170 (251)
T PLN00141         93 TGFRRSFDPFAPWKVDNFGTVNLVEACRKAGVTRFILVSSILVNGAAMGQILNPAYIFLNLFGLTLVAKLQAEKYIRK  170 (251)
T ss_pred             CCCCcCCCCCCceeeehHHHHHHHHHHHHcCCCEEEEEccccccCCCcccccCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence            98642  223346788999999999999999999999999 55653211 1 1         1133467888887765

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=99.81  E-value=3e-19  Score=141.44  Aligned_cols=141  Identities=13%  Similarity=0.103  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+..+...     .....++.++.+|+.|++++.++++       .
T Consensus         8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (255)
T PRK07523          8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAIDAFEAEIGP   87 (255)
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            467899999999999999999999999999999997543111     1112458889999999998888775       4


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||+|....          +...+.+|+.++.++++++.+    .+.+++|++||.....+......|+.+|.+.+
T Consensus        88 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~~sK~a~~  167 (255)
T PRK07523         88 IDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAGKIINIASVQSALARPGIAPYTATKGAVG  167 (255)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEEccchhccCCCCCccHHHHHHHHH
Confidence            7999999996421          134567999999988888764    35679999999433334455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       168 ~~~~~~a  174 (255)
T PRK07523        168 NLTKGMA  174 (255)
T ss_pred             HHHHHHH
Confidence            9988764

>PLN02253 xanthoxin dehydrogenase

Probab=99.81  E-value=6.5e-19  Score=141.41  Aligned_cols=141  Identities=15%  Similarity=0.155  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc---cc-cCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---RD-SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~---~~-~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.....   .. ....++.++++|++|++++.++++       ++
T Consensus        16 l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~g~i   95 (280)
T PLN02253         16 LLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVDFTVDKFGTL   95 (280)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            35789999999999999999999999999999998753211   01 112468899999999999888776       58


Q ss_pred             cEeEEccccCCC------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          123 TAVISCVGGFGS------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       123 d~vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      |++|||||....            +...+++|+.++.++++++.+    .+.++++++||.....+......|+.+|.+.
T Consensus        96 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~  175 (280)
T PLN02253         96 DIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKGSIVSLCSVASAIGGLGPHAYTGSKHAV  175 (280)
T ss_pred             CEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCceEEEecChhhcccCCCCcccHHHHHHH
Confidence            999999996421            235688999999988887753    3346899999832222223456899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+++.++
T Consensus       176 ~~~~~~la  183 (280)
T PLN02253        176 LGLTRSVA  183 (280)
T ss_pred             HHHHHHHH
Confidence            99998764

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=99.81  E-value=3.5e-19  Score=140.24  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=109.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc------ccccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      +.++++++||||+++||.+++++|.++|++|+.+.|+.++.      ........++++.+|+++++++..+.+      
T Consensus         3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~   82 (265)
T COG0300           3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERG   82 (265)
T ss_pred             CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcC
Confidence            34678999999999999999999999999999999997642      112223468899999999998887664      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHH----HHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAI----RAASEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~----~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       .+|++|+|||....          ...++++|+.++..+-    ..+.+++.+++|.++|...-.+.+..+.|++||.+
T Consensus        83 ~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G~IiNI~S~ag~~p~p~~avY~ATKa~  162 (265)
T COG0300          83 GPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAF  162 (265)
T ss_pred             CcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechhhcCCCcchHHHHHHHHH
Confidence             48999999995331          2457889988887554    44566777899999994333444556789999999


Q ss_pred             HHHHHHHh
Q 028890          186 SSDVAACQ  193 (202)
Q Consensus       186 ~E~~~~~~  193 (202)
                      .-.+.+..
T Consensus       163 v~~fSeaL  170 (265)
T COG0300         163 VLSFSEAL  170 (265)
T ss_pred             HHHHHHHH
Confidence            88777664

>PRK07478 short chain dehydrogenase; Provisional

Probab=99.81  E-value=5.7e-19  Score=139.76  Aligned_cols=140  Identities=11%  Similarity=0.102  Sum_probs=108.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++||||+|+||.+++++|+++|++|++++|+.++...     .....++.++.+|+.|+++++++++       ++
T Consensus         5 ~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (254)
T PRK07478          5 NGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVERFGGL   84 (254)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence            56899999999999999999999999999999998643211     1113467889999999998887765       58


Q ss_pred             cEeEEccccCCC-----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          123 TAVISCVGGFGS-----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       123 d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      |++|||||....           +...+++|+.++..+.++    +++.+.+++|++|| ..+..+......|+.+|.+.
T Consensus        85 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~  164 (254)
T PRK07478         85 DIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGGSLIFTSTFVGHTAGFPGMAAYAASKAGL  164 (254)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEechHhhccCCCCcchhHHHHHHH
Confidence            999999996421           234678899888866554    44555678999999 44433445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       165 ~~~~~~la  172 (254)
T PRK07478        165 IGLTQVLA  172 (254)
T ss_pred             HHHHHHHH
Confidence            99988763

>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase

Probab=99.81  E-value=2.4e-19  Score=145.33  Aligned_cols=119  Identities=22%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             EEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC----
Q 028890           60 LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG----  133 (202)
Q Consensus        60 lVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~----  133 (202)
                      +||||+||||++|++.|+++|++|+++.+.               ..+|+.|.+++.++++  ++|+|||+|+...    
T Consensus         1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~---------------~~~Dl~~~~~l~~~~~~~~~d~Vih~A~~~~~~~~   65 (306)
T PLN02725          1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH---------------KELDLTRQADVEAFFAKEKPTYVILAAAKVGGIHA   65 (306)
T ss_pred             CcccCCCcccHHHHHHHHhCCCcEEEeecc---------------ccCCCCCHHHHHHHHhccCCCEEEEeeeeecccch
Confidence            699999999999999999999988766432               1479999999999887  4799999998632    


Q ss_pred             ---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcCCc-chHHHHHHHHHHHHHh
Q 028890          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYLLQ-GYYEGKVLSSDVAACQ  193 (202)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~--------------~~~~~-~Y~~sK~~~E~~~~~~  193 (202)
                         .+...++.|+.++.+++++|++.++++||++|| .+|+..              ..+.+ .|+.+|.++|++++.|
T Consensus        66 ~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~e~~~~~~  144 (306)
T PLN02725         66 NMTYPADFIRENLQIQTNVIDAAYRHGVKKLLFLGSSCIYPKFAPQPIPETALLTGPPEPTNEWYAIAKIAGIKMCQAY  144 (306)
T ss_pred             hhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEEeCceeecCCCCCCCCCHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Confidence               234567899999999999999999999999999 677632              11223 4999999999988765

>PRK08263 short chain dehydrogenase; Provisional

Probab=99.81  E-value=4.1e-19  Score=142.36  Aligned_cols=140  Identities=14%  Similarity=0.061  Sum_probs=107.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+.....  .......+..+++|++|++++.++++       ++|++
T Consensus         2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (275)
T PRK08263          2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIV   81 (275)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            3578999999999999999999999999999999764321  11123467889999999998877655       57999


Q ss_pred             EEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||....          +...+++|+.++..+++++    ++.+.+++|++||.....+......|+.+|.+.+.+.+
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~~~~  161 (275)
T PRK08263         82 VNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSGHIIQISSIGGISAFPMSGIYHASKWALEGMSE  161 (275)
T ss_pred             EECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhcCCCCCccHHHHHHHHHHHHHH
Confidence            999996431          2446789999988777765    55667899999993222233445789999999998887


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .+.
T Consensus       162 ~la  164 (275)
T PRK08263        162 ALA  164 (275)
T ss_pred             HHH
Confidence            753

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=3.3e-19  Score=141.42  Aligned_cols=141  Identities=16%  Similarity=0.118  Sum_probs=108.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCC-ceeEEEccCCCHhhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWAN-NVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~-~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ...+|+|+||||+.+||.+++.+|.++|.+++.+.|...+..      ...... ++..+++|++|.+++.++++     
T Consensus         9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen    9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            457899999999999999999999999999888887754411      122233 59999999999999886653     


Q ss_pred             --CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 --~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                        ++|++|||||...          +....+++|+.|+..+.+++    ++.+-++||.+||...-.+.+....|++||+
T Consensus        89 fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~GhIVvisSiaG~~~~P~~~~Y~ASK~  168 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKH  168 (282)
T ss_pred             cCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCCeEEEEeccccccCCCcccccchHHH
Confidence              6899999999643          12357899999998776665    5555579999999433333333458999999


Q ss_pred             HHHHHHHHh
Q 028890          185 LSSDVAACQ  193 (202)
Q Consensus       185 ~~E~~~~~~  193 (202)
                      +.+.+...+
T Consensus       169 Al~~f~etL  177 (282)
T KOG1205|consen  169 ALEGFFETL  177 (282)
T ss_pred             HHHHHHHHH
Confidence            999887765

>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]

Probab=99.81  E-value=3.3e-19  Score=141.21  Aligned_cols=120  Identities=24%  Similarity=0.302  Sum_probs=103.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~-  133 (202)
                      |+++|||++|.+|.+|+++|. .+++|++++|..                +|++|++.+.++++  ++|+|||+|+... 
T Consensus         1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~----------------~Ditd~~~v~~~i~~~~PDvVIn~AAyt~v   63 (281)
T COG1091           1 MKILITGANGQLGTELRRALP-GEFEVIATDRAE----------------LDITDPDAVLEVIRETRPDVVINAAAYTAV   63 (281)
T ss_pred             CcEEEEcCCChHHHHHHHHhC-CCceEEeccCcc----------------ccccChHHHHHHHHhhCCCEEEECcccccc
Confidence            359999999999999999998 778999999864                69999999999998  5799999999754 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc----------CCcCCcchHHHHHHHHHHHHHhc
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV----------ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~----------~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           .++..|.+|..++.+++++|.+.|. ++||+|| .+|+.          .+.|.+.||.||+++|..++++.
T Consensus        64 D~aE~~~e~A~~vNa~~~~~lA~aa~~~ga-~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~sKl~GE~~v~~~~  139 (281)
T COG1091          64 DKAESEPELAFAVNATGAENLARAAAEVGA-RLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRSKLAGEEAVRAAG  139 (281)
T ss_pred             ccccCCHHHHHHhHHHHHHHHHHHHHHhCC-eEEEeecceEecCCCCCCCCCCCCCCChhhhhHHHHHHHHHHHHhC
Confidence                 3466889999999999999999996 9999999 65532          24567789999999999998863

>PRK07814 short chain dehydrogenase; Provisional

Probab=99.81  E-value=6.1e-19  Score=140.45  Aligned_cols=141  Identities=15%  Similarity=0.082  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+..+...     .....++.++.+|+++++++.++++       +
T Consensus         8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   87 (263)
T PRK07814          8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQAVEAFGR   87 (263)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999997543111     1113468889999999998877665       5


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|+||||||...          .+...+++|+.++.++.+++..     .+.+++|++||.....+..+...|+.+|.+.
T Consensus        88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~a~  167 (263)
T PRK07814         88 LDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGGSVINISSTMGRLAGRGFAAYGTAKAAL  167 (263)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCeEEEEEccccccCCCCCCchhHHHHHHH
Confidence            899999998532          1234678899999999998863     4557899999943223445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       168 ~~~~~~~~  175 (263)
T PRK07814        168 AHYTRLAA  175 (263)
T ss_pred             HHHHHHHH
Confidence            99988764

>PRK09291 short chain dehydrogenase; Provisional

Probab=99.81  E-value=5.1e-19  Score=140.04  Aligned_cols=138  Identities=12%  Similarity=0.120  Sum_probs=105.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-CccEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-GVTAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~vi~~a  129 (202)
                      +++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|+.|++++.+++. ++|+|||||
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            4689999999999999999999999999999997543111     1123468899999999999998887 799999999


Q ss_pred             ccCCC----------CccchhhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          130 GGFGS----------NSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       130 ~~~~~----------~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |....          +...+++|+.++.++.+    .+++.+.++||++||............|+.+|.+.|.+++.+
T Consensus        82 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~Y~~sK~a~~~~~~~l  159 (257)
T PRK09291         82 GIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKGKVVFTSSMAGLITGPFTGAYCASKHALEAIAEAM  159 (257)
T ss_pred             CcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEcChhhccCCCCcchhHHHHHHHHHHHHHH
Confidence            96431          23456788888776554    445566789999999322222334568999999999887764

>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=5e-19  Score=140.00  Aligned_cols=139  Identities=18%  Similarity=0.172  Sum_probs=106.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       .+
T Consensus         2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12745          2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPADVADLSAHEAMLDAAQAAWGRI   81 (256)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            4689999999999999999999999999999987543111      1123478999999999988777665       57


Q ss_pred             cEeEEccccCCC------------CccchhhhHHHHHHHHHHHHHc-----C-----CCEEEEEeccccCcCCcCCcchH
Q 028890          123 TAVISCVGGFGS------------NSYMYKINGTANINAIRAASEK-----G-----VKRFVYISAADFGVANYLLQGYY  180 (202)
Q Consensus       123 d~vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~~~~-----~-----~~~~v~~SS~~~~~~~~~~~~Y~  180 (202)
                      |++|||+|....            +...+++|+.++.++++++.+.     +     .++|+++||.....+..+.+.|+
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~  161 (256)
T PRK12745         82 DCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHRSIVFVSSVNAIMVSPNRGEYC  161 (256)
T ss_pred             CEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCcEEEEECChhhccCCCCCcccH
Confidence            999999986321            1345789999999988887432     1     45799999943223344567899


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .+|.+.|.+++.++
T Consensus       162 ~sK~a~~~~~~~l~  175 (256)
T PRK12745        162 ISKAGLSMAAQLFA  175 (256)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988875

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.81  E-value=3.2e-19  Score=140.78  Aligned_cols=140  Identities=18%  Similarity=0.186  Sum_probs=107.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhcC--------cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDG--------VT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~--------~d  123 (202)
                      ++++++||||+|+||+++++.|+++|++|+++.++......   .....++.++++|+.|++++.++++.        +|
T Consensus         4 ~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~id   83 (253)
T PRK08642          4 SEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELGDRAIALQADVTDREQVQAMFATATEHFGKPIT   83 (253)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHhCCCCe
Confidence            56799999999999999999999999999887654322111   11124688999999999988877753        89


Q ss_pred             EeEEccccCC----------------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          124 AVISCVGGFG----------------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       124 ~vi~~a~~~~----------------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                      ++|||||...                .+...+++|+.++.++++++.    +.+.++++++||..+..+..+...|+.+|
T Consensus        84 ~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~Y~~sK  163 (253)
T PRK08642         84 TVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFGRIINIGTNLFQNPVVPYHDYTTAK  163 (253)
T ss_pred             EEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCeEEEEECCccccCCCCCccchHHHH
Confidence            9999998521                012357899999999988875    34557999999954444445567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.|.+++.++
T Consensus       164 ~a~~~l~~~la  174 (253)
T PRK08642        164 AALLGLTRNLA  174 (253)
T ss_pred             HHHHHHHHHHH
Confidence            99999999864

>PRK07063 short chain dehydrogenase; Provisional

Probab=99.80  E-value=6.3e-19  Score=139.98  Aligned_cols=141  Identities=16%  Similarity=0.067  Sum_probs=108.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc----CCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS----WANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~----~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....   ..    ...++.++.+|++|++++.++++      
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF   84 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999997543111   00    23468899999999998887765      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...          ++...+++|+.++..+.+++.    +.+.+++|++||.....+.....+|+.+|++
T Consensus        85 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa  164 (260)
T PRK07063         85 GPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRGSIVNIASTHAFKIIPGCFPYPVAKHG  164 (260)
T ss_pred             CCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCeEEEEECChhhccCCCCchHHHHHHHH
Confidence             5899999999532          123467889999988877764    3455699999994222333445689999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.++
T Consensus       165 ~~~~~~~la  173 (260)
T PRK07063        165 LLGLTRALG  173 (260)
T ss_pred             HHHHHHHHH
Confidence            999988764

>PRK06197 short chain dehydrogenase; Provisional

Probab=99.80  E-value=7.3e-19  Score=143.02  Aligned_cols=142  Identities=15%  Similarity=0.076  Sum_probs=106.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------c-cCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~-~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ..++++++||||+|+||.+++++|+++|++|++++|+..+...      . ....++.++.+|+.|.+++.++++     
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~   92 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAADALRAA   92 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHhh
Confidence            3467899999999999999999999999999999997543110      0 112468899999999998887665     


Q ss_pred             --CccEeEEccccCC--------CCccchhhhHHHHH----HHHHHHHHcCCCEEEEEecc-cc--Cc----------CC
Q 028890          121 --GVTAVISCVGGFG--------SNSYMYKINGTANI----NAIRAASEKGVKRFVYISAA-DF--GV----------AN  173 (202)
Q Consensus       121 --~~d~vi~~a~~~~--------~~~~~~~~n~~~~~----~~~~~~~~~~~~~~v~~SS~-~~--~~----------~~  173 (202)
                        ++|++|||||...        .+...+++|+.++.    .+++.+++.+.++||++||. .+  +.          +.
T Consensus        93 ~~~iD~li~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~  172 (306)
T PRK06197         93 YPRIDLLINNAGVMYTPKQTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGSRVVTVSSGGHRIRAAIHFDDLQWERRY  172 (306)
T ss_pred             CCCCCEEEECCccccCCCccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCCEEEEECCHHHhccCCCCccccCcccCC
Confidence              4899999999532        22456789999955    45555666666799999993 22  21          11


Q ss_pred             cCCcchHHHHHHHHHHHHHhc
Q 028890          174 YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .+...|+.||.+.+.+.+.++
T Consensus       173 ~~~~~Y~~SK~a~~~~~~~la  193 (306)
T PRK06197        173 NRVAAYGQSKLANLLFTYELQ  193 (306)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH
Confidence            234679999999998888753

>PRK07024 short chain dehydrogenase; Provisional

Probab=99.80  E-value=4.8e-19  Score=140.57  Aligned_cols=139  Identities=14%  Similarity=0.067  Sum_probs=105.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c-cCCCceeEEEccCCCHhhHHHHhcC-------ccE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALDG-------VTA  124 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~-~~~~~~~~~~~D~~~~~~~~~~~~~-------~d~  124 (202)
                      +++++||||+|+||.+++++|+++|++|++++|+.+....   . ....++.++.+|++|++++.++++.       +|+
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g~id~   81 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAARVSVYAADVRDADALAAAAADFIAAHGLPDV   81 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCCeeEEEEcCCCCHHHHHHHHHHHHHhCCCCCE
Confidence            4799999999999999999999999999999987543111   0 1112688999999999998877653       799


Q ss_pred             eEEccccCCC-----------CccchhhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFGS-----------NSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||+|....           +...+++|+.++.++++    .+++.+.++||++||...-.+......|+.+|.+.+.+
T Consensus        82 lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  161 (257)
T PRK07024         82 VIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRGTLVGIASVAGVRGLPGAGAYSASKAAAIKY  161 (257)
T ss_pred             EEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCCcchHHHHHHHHHH
Confidence            9999996431           12356889999988666    55566678999999932222234456899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       162 ~~~l~  166 (257)
T PRK07024        162 LESLR  166 (257)
T ss_pred             HHHHH
Confidence            87753

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.80  E-value=1.3e-18  Score=137.18  Aligned_cols=140  Identities=14%  Similarity=0.095  Sum_probs=105.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .+++++||||+|+||++++++|+++|++|+++ .|+..+..     ......++.++.+|++|++++.++++       +
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQIDEEFGR   82 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            45799999999999999999999999998764 56543210     01123568899999999998887776       4


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|+||||+|....          +...+++|+.++.++++++.+    .+.++||++||.....+..+...|+.+|.+.|
T Consensus        83 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~y~~sK~a~~  162 (250)
T PRK08063         83 LDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGGKIISLSSLGSIRYLENYTTVGVSKAALE  162 (250)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhccCCCCccHHHHHHHHHH
Confidence            7999999985321          122467899999988887754    45569999999432333445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++++.
T Consensus       163 ~~~~~~~  169 (250)
T PRK08063        163 ALTRYLA  169 (250)
T ss_pred             HHHHHHH
Confidence            9988753

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=99.80  E-value=7.3e-19  Score=138.82  Aligned_cols=138  Identities=17%  Similarity=0.132  Sum_probs=105.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEeEE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~  127 (202)
                      |+++||||+|+||.++++.|+++|++|++++|++++...  .....++.++.+|+.|++++.++++       ++|++||
T Consensus         1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~   80 (248)
T PRK10538          1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVN   80 (248)
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            589999999999999999999999999999997643211  1113468899999999998877665       6899999


Q ss_pred             ccccCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          128 CVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       128 ~a~~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |+|...           ++...+++|+.++..+++.+    ++.+.+++|++||.....+..+...|+.+|.+.+.+.+.
T Consensus        81 ~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~~~~~~  160 (248)
T PRK10538         81 NAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN  160 (248)
T ss_pred             CCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCcccCCCCCCCchhHHHHHHHHHHHHH
Confidence            998632           11345788989876665554    456677999999943233344567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       161 l~  162 (248)
T PRK10538        161 LR  162 (248)
T ss_pred             HH
Confidence            53

>PRK07774 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1e-18  Score=137.73  Aligned_cols=137  Identities=18%  Similarity=0.166  Sum_probs=106.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+......     .....++.++.+|++|.+++.++++       .
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGG   83 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            456899999999999999999999999999999997543111     0112367889999999998877665       5


Q ss_pred             ccEeEEccccCCC-------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEec-cccCcCCcCCcchHHHH
Q 028890          122 VTAVISCVGGFGS-------------NSYMYKINGTANINAIRAASE----KGVKRFVYISA-ADFGVANYLLQGYYEGK  183 (202)
Q Consensus       122 ~d~vi~~a~~~~~-------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK  183 (202)
                      +|+||||||....             +...+++|+.++.++++++.+    .+.++||++|| ..+    .+.+.|+.+|
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~----~~~~~Y~~sK  159 (250)
T PRK07774         84 IDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGGAIVNQSSTAAW----LYSNFYGLAK  159 (250)
T ss_pred             CCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCcEEEEEeccccc----CCccccHHHH
Confidence            7999999996421             123567999999998888754    34569999999 333    2357899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.|.+++.+.
T Consensus       160 ~a~~~~~~~l~  170 (250)
T PRK07774        160 VGLNGLTQQLA  170 (250)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>PRK09135 pteridine reductase; Provisional

Probab=99.80  E-value=8.3e-19  Score=137.94  Aligned_cols=140  Identities=17%  Similarity=0.139  Sum_probs=106.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+..+...       ......+.++.+|++|.+++.++++       
T Consensus         5 ~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   84 (249)
T PRK09135          5 SAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALRPGSAAALQADLLDPDALPELVAACVAAFG   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            45799999999999999999999999999999987433111       1112458899999999998888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|+||||||....          +...+++|+.++.++++++.+.   ..+.++++++.....+..+...|+.+|.++|
T Consensus        85 ~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~~  164 (249)
T PRK09135         85 RLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIHAERPLKGYPVYCAAKAALE  164 (249)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChhhcCCCCCchhHHHHHHHHH
Confidence            47999999995321          2346779999999999998642   2246777766322334456678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       165 ~~~~~l~  171 (249)
T PRK09135        165 MLTRSLA  171 (249)
T ss_pred             HHHHHHH
Confidence            9998764

>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.80  E-value=8.4e-19  Score=137.58  Aligned_cols=140  Identities=16%  Similarity=0.109  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+|+||++++++|+++|++|+++.|+......      .....++.++.+|+.|++++.++++       +
T Consensus         5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~   84 (249)
T PRK12825          5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVAAAVERFGR   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHHHHHHHcCC
Confidence            46799999999999999999999999999887776543211      1123568899999999998887764       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|+|||++|....          +...+++|+.++.++++.+    ++.+.++||++||.....+......|+.+|.+.+
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~i~~SS~~~~~~~~~~~~y~~sK~~~~  164 (249)
T PRK12825         85 IDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGGRIVNISSVAGLPGWPGRSNYAAAKAGLV  164 (249)
T ss_pred             CCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECccccCCCCCCchHHHHHHHHHH
Confidence            7999999995331          1345678999998888876    4567789999999322233445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.++
T Consensus       165 ~~~~~~~  171 (249)
T PRK12825        165 GLTKALA  171 (249)
T ss_pred             HHHHHHH
Confidence            9888764

>PRK12827 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.9e-18  Score=135.86  Aligned_cols=140  Identities=17%  Similarity=0.115  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ++++++||||+|+||++++++|+++|++|++++|.......         .....++.++.+|+.|++++.++++     
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   84 (249)
T PRK12827          5 DSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAALDAGVEE   84 (249)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56899999999999999999999999999998764322100         1113468899999999998887764     


Q ss_pred             --CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                        ++|+||||+|....          +...+++|+.++.++++++.     +.+.+++|++||.....+..+...|+.+|
T Consensus        85 ~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sK  164 (249)
T PRK12827         85 FGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGGRIVNIASVAGVRGNRGQVNYAASK  164 (249)
T ss_pred             hCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCeEEEEECCchhcCCCCCCchhHHHH
Confidence              58999999996441          13456889999999999887     45567999999943222344567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       165 ~a~~~~~~~l~  175 (249)
T PRK12827        165 AGLIGLTKTLA  175 (249)
T ss_pred             HHHHHHHHHHH
Confidence            99998888764

>PRK08278 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.7e-18  Score=138.75  Aligned_cols=141  Identities=13%  Similarity=0.097  Sum_probs=108.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------------ccCCCceeEEEccCCCHhhHHHHhc-
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD-  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------------~~~~~~~~~~~~D~~~~~~~~~~~~-  120 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+......            .....++.++.+|+++++++.++++ 
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~   83 (273)
T PRK08278          4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAAVAK   83 (273)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHH
Confidence            356899999999999999999999999999999987543110            0123468889999999998887765 


Q ss_pred             ------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCC--cCCcc
Q 028890          121 ------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVAN--YLLQG  178 (202)
Q Consensus       121 ------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~--~~~~~  178 (202)
                            ++|++|||||....          +...+++|+.++.++++++..    .+.++++++||.....+.  .+..+
T Consensus        84 ~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~  163 (273)
T PRK08278         84 AVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSPPLNLDPKWFAPHTA  163 (273)
T ss_pred             HHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECCchhccccccCCcch
Confidence                  58999999996321          234677999999999988853    334589999984322232  45678


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.+.|.+++.++
T Consensus       164 Y~~sK~a~~~~~~~la  179 (273)
T PRK08278        164 YTMAKYGMSLCTLGLA  179 (273)
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999999864

>PRK08267 short chain dehydrogenase; Provisional

Probab=99.80  E-value=5.9e-19  Score=140.15  Aligned_cols=139  Identities=15%  Similarity=0.125  Sum_probs=106.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhc--------CccE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD--------GVTA  124 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~--------~~d~  124 (202)
                      ||+++||||+|+||++++++|+++|++|++++|+.+....   .....++.++.+|+.|++++.++++        ++|+
T Consensus         1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~   80 (260)
T PRK08267          1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTDRAAWDAALADFAAATGGRLDV   80 (260)
T ss_pred             CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence            4789999999999999999999999999999987653211   1113578999999999998877654        4699


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      ||||||....          +...+++|+.++.++++++.    ..+.+++|++||.....+......|+.+|.+.+.+.
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~  160 (260)
T PRK08267         81 LFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGARVINTSSASAIYGQPGLAVYSATKFAVRGLT  160 (260)
T ss_pred             EEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEeCchhhCcCCCCchhhHHHHHHHHHHH
Confidence            9999996431          23467899999998887764    345579999999321122334578999999999888


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       161 ~~l~  164 (260)
T PRK08267        161 EALD  164 (260)
T ss_pred             HHHH
Confidence            8763

>PRK08264 short chain dehydrogenase; Validated

Probab=99.80  E-value=1.5e-18  Score=135.91  Aligned_cols=138  Identities=20%  Similarity=0.152  Sum_probs=108.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---CccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~  130 (202)
                      .+++++||||+|+||++++++|+++|+ +|++++|+..+...  ...++.++.+|+.|++++.++++   .+|+|||++|
T Consensus         5 ~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag   82 (238)
T PRK08264          5 KGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD--LGPRVVPLQLDVTDPASVAAAAEAASDVTILVNNAG   82 (238)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh--cCCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            567999999999999999999999999 99999998654322  33578999999999999888776   4899999999


Q ss_pred             cCCC-----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFGS-----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....           +...+++|+.++.++++++.    +.+.++|+++||...-.+..+...|+.+|.+.|.+.+.++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~l~  161 (238)
T PRK08264         83 IFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGGAIVNVLSVLSWVNFPNLGTYSASKAAAWSLTQALR  161 (238)
T ss_pred             cCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcChhhccCCCCchHhHHHHHHHHHHHHHHH
Confidence            7221           12356789999998888864    3456789999993222233455789999999998888754

>PRK06483 dihydromonapterin reductase; Provisional

Probab=99.80  E-value=9.3e-19  Score=137.11  Aligned_cols=139  Identities=14%  Similarity=0.138  Sum_probs=105.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~~  128 (202)
                      +++++||||+|+||++++++|+++|++|++++|+..+........++.++.+|+.|++++.++++       ++|++|||
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~   81 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN   81 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEEC
Confidence            56899999999999999999999999999999986542222112347889999999988777654       48999999


Q ss_pred             cccCCC----------CccchhhhHHHHHHHHHHHH----HcC--CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          129 VGGFGS----------NSYMYKINGTANINAIRAAS----EKG--VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       129 a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||....          +...+++|+.++..+.+.+.    +.+  .+++|++||.....+......|+.+|.+.|.+++.
T Consensus        82 ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~asKaal~~l~~~  161 (236)
T PRK06483         82 ASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAASDIIHITDYVVEKGSDKHIAYAASKAALDNMTLS  161 (236)
T ss_pred             CccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCceEEEEcchhhccCCCCCccHHHHHHHHHHHHHH
Confidence            985321          23466888888886666553    333  45899999943333444567899999999999998


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       162 ~a  163 (236)
T PRK06483        162 FA  163 (236)
T ss_pred             HH
Confidence            64

>PRK05875 short chain dehydrogenase; Provisional

Probab=99.80  E-value=1.2e-18  Score=139.50  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc----CCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS----WANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~----~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||+++++.|+++|++|++++|+..+...   ..    ...++.++.+|+.|++++.++++      
T Consensus         5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   84 (276)
T PRK05875          5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH   84 (276)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            356899999999999999999999999999999987543111   00    12467889999999998887766      


Q ss_pred             -CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||+|....           +...+++|+.++..+++++.+    .+.++|+++||.....+..+.++|+.+|.
T Consensus        85 ~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~  164 (276)
T PRK05875         85 GRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGGSFVGISSIAASNTHRWFGAYGVTKS  164 (276)
T ss_pred             CCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhcCCCCCCcchHHHHH
Confidence             68999999985321           234567899999988877644    34458999999433333345678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.|.+++.+.
T Consensus       165 a~~~~~~~~~  174 (276)
T PRK05875        165 AVDHLMKLAA  174 (276)
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.79  E-value=9.8e-19  Score=137.77  Aligned_cols=141  Identities=15%  Similarity=0.111  Sum_probs=108.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c-cCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~-~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+..+...   . ....++.++.+|+.|++++..+++       ++
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~   82 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVAAALERFGSV   82 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            356799999999999999999999999999999998654211   0 012457899999999999987765       47


Q ss_pred             cEeEEccccCCC-----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |+|||++|....           +...+++|+.++.++.+.+.    +.+.++||++||.....+..+...|+.+|.+.+
T Consensus        83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sk~~~~  162 (251)
T PRK07231         83 DILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGGAIVNVASTAGLRPRPGLGWYNASKGAVI  162 (251)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhcCCCCCchHHHHHHHHHH
Confidence            999999996321           13467888888877776654    456689999999432234455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       163 ~~~~~~a  169 (251)
T PRK07231        163 TLTKALA  169 (251)
T ss_pred             HHHHHHH
Confidence            8888764

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=99.79  E-value=8.3e-19  Score=138.20  Aligned_cols=139  Identities=19%  Similarity=0.178  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|+.|.++++++++       ++
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~   81 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACDITDRDSVDTAVAAAEQALGPV   81 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            46899999999999999999999999999999987643211     1113468899999999998888765       58


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEecc-ccCcCCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAA-DFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |++|||+|....          +...+++|+.++.++++++.    +.+.+++|++||. .+. +......|+.+|++.+
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~iss~~~~~-~~~~~~~Y~~sK~a~~  160 (250)
T TIGR03206        82 DVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAGRIVNIASDAARV-GSSGEAVYAACKGGLV  160 (250)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEECchhhcc-CCCCCchHHHHHHHHH
Confidence            999999985321          13457899999998877764    4566799999993 333 3345678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       161 ~~~~~la  167 (250)
T TIGR03206       161 AFSKTMA  167 (250)
T ss_pred             HHHHHHH
Confidence            8888764

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PRK12937 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.6e-18  Score=136.16  Aligned_cols=141  Identities=13%  Similarity=0.137  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|+++.|+......      .....++.++.+|+.|++++.++++       
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   82 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFDAAETAFG   82 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            456899999999999999999999999999888775432111      1123568899999999998888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|++|||||....          +...+++|+.++.++++++.+.  ..+++|++||.....+.+....|+.+|.+.+.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~  162 (245)
T PRK12937         83 RIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIALPLPGYGPYAASKAAVEG  162 (245)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccCCCCCCchhHHHHHHHHH
Confidence            58999999996431          2345679999999988887653  23589999995555555667889999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       163 ~~~~~a  168 (245)
T PRK12937        163 LVHVLA  168 (245)
T ss_pred             HHHHHH
Confidence            988753

>PRK12746 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.6e-18  Score=137.02  Aligned_cols=140  Identities=18%  Similarity=0.124  Sum_probs=105.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCcc---c--ccCCCceeEEEccCCCHhhHHHHhc--------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSL---R--DSWANNVIWHQGNLLSSDSWKEALD--------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~~---~--~~~~~~~~~~~~D~~~~~~~~~~~~--------  120 (202)
                      ++++++||||+|+||++++++|+++|++|.++ .|+..+..   .  .....++.++.+|+.|++++.++++        
T Consensus         5 ~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~   84 (254)
T PRK12746          5 DGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEADLNSIDGVKKLVEQLKNELQI   84 (254)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCcCCHHHHHHHHHHHHHHhcc
Confidence            45799999999999999999999999999775 45532210   0  1112468889999999999887766        


Q ss_pred             -----CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 -----GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 -----~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                           ++|++|||||....          +...+++|+.++.++++++.+.  +.+++|++||.....+..+...|+.+|
T Consensus        85 ~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~Y~~sK  164 (254)
T PRK12746         85 RVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEGRVINISSAEVRLGFTGSIAYGLSK  164 (254)
T ss_pred             ccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECCHHhcCCCCCCcchHhhH
Confidence                 48999999996431          1334568999999999988653  345899999932223345567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.|.+++.+.
T Consensus       165 ~a~~~~~~~~~  175 (254)
T PRK12746        165 GALNTMTLPLA  175 (254)
T ss_pred             HHHHHHHHHHH
Confidence            99999887753

>PRK06101 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.5e-18  Score=136.52  Aligned_cols=139  Identities=15%  Similarity=0.114  Sum_probs=107.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhcC----ccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALDG----VTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~----~d~vi~~a~  130 (202)
                      +++++||||+|+||.+++++|+++|++|++++|+...... .....++.++.+|++|++++.+++++    +|.+|||||
T Consensus         1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~d~~i~~ag   80 (240)
T PRK06101          1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTDHPGTKAALSQLPFIPELWIFNAG   80 (240)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHHHhcccCCCEEEEcCc
Confidence            4689999999999999999999999999999997543211 11124688999999999999988875    589999998


Q ss_pred             cCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....          +...+++|+.++.++++++...  +.+++|++||.....+......|+.+|.+.+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l~  156 (240)
T PRK06101         81 DCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELALPRAEAYGASKAAVAYFARTLQ  156 (240)
T ss_pred             ccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCCCCCchhhHHHHHHHHHHHHHH
Confidence            5321          1346889999999999988753  23589999984322333455689999999999988653

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=99.79  E-value=1.9e-18  Score=141.58  Aligned_cols=113  Identities=14%  Similarity=0.110  Sum_probs=88.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c--cCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~--~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+..+...   .  ....++.++.+|+.|.+++.++++       +
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   83 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIPPDSYTIIHIDLGDLDSVRRFVDDFRALGKP   83 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            357899999999999999999999999999999987543110   1  112468899999999998887775       3


Q ss_pred             ccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHH----cC--CCEEEEEec
Q 028890          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASE----KG--VKRFVYISA  166 (202)
Q Consensus       122 ~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~----~~--~~~~v~~SS  166 (202)
                      +|++|||||....           +...+++|+.|+.++++++..    .+  .+|||++||
T Consensus        84 iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS  145 (322)
T PRK07453         84 LDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGT  145 (322)
T ss_pred             ccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEcc
Confidence            8999999995421           234678999999988777643    33  359999999

>PRK08251 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.5e-18  Score=135.53  Aligned_cols=139  Identities=19%  Similarity=0.148  Sum_probs=105.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------cc-CCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~-~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      +++++||||+|+||++++++|+++|++|++++|++.....      .. ...++.++.+|++|++++.++++       +
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEFRDELGG   81 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999999998643111      11 13468899999999988877655       5


Q ss_pred             ccEeEEccccCCCC----------ccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGSN----------SYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~~----------~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||.....          ...+++|+.++.++++++    ++.+.++||++|| ......+.+...|+.+|.+.
T Consensus        82 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~  161 (248)
T PRK08251         82 LDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSGHLVLISSVSAVRGLPGVKAAYAASKAGV  161 (248)
T ss_pred             CCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeccccccCCCCCcccHHHHHHHH
Confidence            89999999864321          235688999998887776    3456779999999 32222223357899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.+.
T Consensus       162 ~~~~~~l~  169 (248)
T PRK08251        162 ASLGEGLR  169 (248)
T ss_pred             HHHHHHHH
Confidence            98887654

>PRK08265 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.9e-18  Score=137.58  Aligned_cols=141  Identities=13%  Similarity=0.133  Sum_probs=108.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.....  ......++.++.+|+.|++++.++++       .+|+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            45789999999999999999999999999999999864311  11123468899999999998877765       4799


Q ss_pred             eEEccccCC---------CCccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          125 VISCVGGFG---------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       125 vi~~a~~~~---------~~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      +|||||...         .+...+++|+.++..+.+++..   .+.+++|++||.....+......|+.+|.+.+.+.+.
T Consensus        84 lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaa~~~~~~~  163 (261)
T PRK08265         84 LVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGGAIVNFTSISAKFAQTGRWLYPASKAAIRQLTRS  163 (261)
T ss_pred             EEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHHHHHHHHHHH
Confidence            999999642         1235678899999888877643   3346999999932222334457899999999998887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       164 la  165 (261)
T PRK08265        164 MA  165 (261)
T ss_pred             HH
Confidence            54

>PRK06914 short chain dehydrogenase; Provisional

Probab=99.79  E-value=9.5e-19  Score=140.38  Aligned_cols=139  Identities=14%  Similarity=0.128  Sum_probs=106.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------c-cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~-~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ++++++||||+|++|+++++.|+++|++|++++|+++....      . ....+++++.+|+.|++++++ ++       
T Consensus         2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~~~~~   80 (280)
T PRK06914          2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVLKEIG   80 (280)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHHHhcC
Confidence            35789999999999999999999999999999988643111      0 112468899999999988765 33       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|+||||+|....          +...+++|+.++.++++.+    ++.+.++||++||.....+..+...|+.+|.+.
T Consensus        81 ~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~~~  160 (280)
T PRK06914         81 RIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSGKIINISSISGRVGFPGLSPYVSSKYAL  160 (280)
T ss_pred             CeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEECcccccCCCCCCchhHHhHHHH
Confidence            47999999986431          1235678999988887774    556678999999943333345567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       161 ~~~~~~l~  168 (280)
T PRK06914        161 EGFSESLR  168 (280)
T ss_pred             HHHHHHHH
Confidence            99888763

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.79  E-value=1.6e-18  Score=135.87  Aligned_cols=140  Identities=15%  Similarity=0.104  Sum_probs=108.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhcC-------c
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALDG-------V  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~-------~  122 (202)
                      ++++++||||+|++|++++++|+++|++|++++|++.+...     .....++.++.+|+.|++++.+++++       +
T Consensus         4 ~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (246)
T PRK05653          4 QGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIEAAVEAFGAL   83 (246)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence            45799999999999999999999999999999998654211     11234688999999999988777653       5


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |+|||++|....          +...++.|+.+..++++++.    +.+.++||++||.....+..+...|+.+|.+.+.
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~~~~  163 (246)
T PRK05653         84 DILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYGRIVNISSVSGVTGNPGQTNYSAAKAGVIG  163 (246)
T ss_pred             CEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhccCCCCCcHhHhHHHHHHH
Confidence            999999986432          13356789999998888774    5567899999994222234556789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       164 ~~~~l~  169 (246)
T PRK05653        164 FTKALA  169 (246)
T ss_pred             HHHHHH
Confidence            888753

>PRK06138 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.2e-18  Score=137.38  Aligned_cols=141  Identities=13%  Similarity=0.081  Sum_probs=107.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|+++.|+.+....    .....++.++.+|++|++++.++++       ++
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~i   82 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVDFVAARWGRL   82 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            357899999999999999999999999999999988543111    0113468899999999999887765       58


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |+||||+|....          +...+.+|+.++.++.+.+    ++.+.++|+++||.....+.....+|+.+|.+.+.
T Consensus        83 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a~~~  162 (252)
T PRK06138         83 DVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGGSIVNTASQLALAGGRGRAAYVASKGAIAS  162 (252)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCCccHHHHHHHHHHH
Confidence            999999996431          1234778999987666554    55667899999993222233445789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       163 ~~~~l~  168 (252)
T PRK06138        163 LTRAMA  168 (252)
T ss_pred             HHHHHH
Confidence            988763

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=99.79  E-value=1.4e-18  Score=137.92  Aligned_cols=138  Identities=17%  Similarity=0.118  Sum_probs=103.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cc--cCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RD--SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~--~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.....  ..  ....++.++.+|++|++++.++++       ++
T Consensus         6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (260)
T PRK12823          6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQAAMAAAVEAFGRI   85 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHHHHHHHHHHcCCC
Confidence            35689999999999999999999999999999998742210  00  113467789999999888776665       58


Q ss_pred             cEeEEccccCC--C---------CccchhhhHHHHHHHHH----HHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          123 TAVISCVGGFG--S---------NSYMYKINGTANINAIR----AASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       123 d~vi~~a~~~~--~---------~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      |++|||||...  .         +...+++|+.++..+++    .+++.+.++||++|| ..++   ....+|+.+|.+.
T Consensus        86 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~---~~~~~Y~~sK~a~  162 (260)
T PRK12823         86 DVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGGAIVNVSSIATRG---INRVPYSAAKGGV  162 (260)
T ss_pred             eEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEcCccccC---CCCCccHHHHHHH
Confidence            99999998421  1         12346788888775544    444566679999999 3333   2346899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.++
T Consensus       163 ~~~~~~la  170 (260)
T PRK12823        163 NALTASLA  170 (260)
T ss_pred             HHHHHHHH
Confidence            99988764

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=99.79  E-value=1.5e-18  Score=138.07  Aligned_cols=140  Identities=21%  Similarity=0.202  Sum_probs=106.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|+.|.+++.++++       ++|++
T Consensus         4 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~l   83 (262)
T TIGR03325         4 KGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDCL   83 (262)
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            56899999999999999999999999999999987643111  1113468889999999988777665       57999


Q ss_pred             EEccccCC---------------CCccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          126 ISCVGGFG---------------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       126 i~~a~~~~---------------~~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |||||...               .+...+++|+.++..+++++.+.   ..+++|++||...-.+......|+.+|.+.+
T Consensus        84 i~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa~~  163 (262)
T TIGR03325        84 IPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTISNAGFYPNGGGPLYTAAKHAVV  163 (262)
T ss_pred             EECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEeccceecCCCCCchhHHHHHHHH
Confidence            99998531               12356788999999988887542   2257888888322223334568999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.++
T Consensus       164 ~l~~~la  170 (262)
T TIGR03325       164 GLVKELA  170 (262)
T ss_pred             HHHHHHH
Confidence            9998864

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>PRK09134 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.4e-18  Score=136.61  Aligned_cols=141  Identities=14%  Similarity=0.072  Sum_probs=105.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..+++++||||+|+||++++++|+++|++|+++.++......      .....++.++.+|++|.+++.++++       
T Consensus         7 ~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   86 (258)
T PRK09134          7 AAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVARASAALG   86 (258)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999888765432111      1113468899999999998887765       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|+||||||....          +...+++|+.++..+++++...    +.+++|+++|.....+.+....|+.+|.+.
T Consensus        87 ~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~~~p~~~~Y~~sK~a~  166 (258)
T PRK09134         87 PITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWNLNPDFLSYTLSKAAL  166 (258)
T ss_pred             CCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcCCCCCchHHHHHHHHH
Confidence            37999999986431          2346789999999998887542    345888888732222233346899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+.+.++
T Consensus       167 ~~~~~~la  174 (258)
T PRK09134        167 WTATRTLA  174 (258)
T ss_pred             HHHHHHHH
Confidence            99998875

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.79  E-value=3.1e-18  Score=134.35  Aligned_cols=140  Identities=14%  Similarity=0.160  Sum_probs=108.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++||||+|+||.+++++|+++|++|++++|+..+...     .....++.++.+|+++++++.++++       ++
T Consensus         6 ~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   85 (239)
T PRK07666          6 QGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVSDYEEVTAAIEQLKNELGSI   85 (239)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCCCHHHHHHHHHHHHHHcCCc
Confidence            46799999999999999999999999999999997643111     1123468889999999999888776       68


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||+|....          +...+++|+.++.++.+++.    +.+.+++|++||.....+..+...|+.+|.+.+.
T Consensus        86 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~  165 (239)
T PRK07666         86 DILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSGDIINISSTAGQKGAAVTSAYSASKFGVLG  165 (239)
T ss_pred             cEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEEcchhhccCCCCCcchHHHHHHHHH
Confidence            999999986321          13457889999988887775    3456799999994333334455789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       166 ~~~~~a  171 (239)
T PRK07666        166 LTESLM  171 (239)
T ss_pred             HHHHHH
Confidence            887653

>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated

Probab=99.79  E-value=2.6e-18  Score=135.61  Aligned_cols=137  Identities=12%  Similarity=0.134  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC-------ccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG-------VTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-------~d~vi  126 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+..    .....++.++++|+.|++++.+++++       +|++|
T Consensus         6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   81 (252)
T PRK08220          6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFL----TQEDYPFATFVLDVSDAAAVAQVCQRLLAETGPLDVLV   81 (252)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchh----hhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            35689999999999999999999999999999998761    12245788999999999998887763       79999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||+|...          .+...+++|+.++..+++++.    +.+.+++|++||.....+..+...|+.+|.+.+.+++.
T Consensus        82 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~  161 (252)
T PRK08220         82 NAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSGAIVTVGSNAAHVPRIGMAAYGASKAALTSLAKC  161 (252)
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCCCchhHHHHHHHHHHHHH
Confidence            9999643          123467889999998888864    34556899999943333444567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       162 la  163 (252)
T PRK08220        162 VG  163 (252)
T ss_pred             HH
Confidence            64

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=99.79  E-value=1.1e-18  Score=138.33  Aligned_cols=141  Identities=13%  Similarity=0.132  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||.++++.|+++|++|++++|+......  .....++.++.+|+.|++++.++++       ++|+
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            356799999999999999999999999999999987653211  1113468889999999998887765       5799


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||||...          ++...+++|+.++.++++++...    + .++||++||.....+..+...|+.+|.+.+.+
T Consensus        84 li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~  163 (257)
T PRK07067         84 LFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAGRRGEALVSHYCATKAAVISY  163 (257)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHhCCCCCCCchhhhhHHHHHHH
Confidence            999998642          12346789999999999888542    1 25899999943223344567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.++
T Consensus       164 ~~~la  168 (257)
T PRK07067        164 TQSAA  168 (257)
T ss_pred             HHHHH
Confidence            88754

>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]

Probab=99.79  E-value=1.7e-18  Score=135.09  Aligned_cols=139  Identities=21%  Similarity=0.261  Sum_probs=112.2

Q ss_pred             CCCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           51 VPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        51 ~~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      ..+..+++|+||||+||||+||++.|..+||+|++++.-.....    .....++++.+.-|+.     ..++.++|.|+
T Consensus        22 ~~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~~~~~~~~~fel~~hdv~-----~pl~~evD~Iy   96 (350)
T KOG1429|consen   22 VKPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENLEHWIGHPNFELIRHDVV-----EPLLKEVDQIY   96 (350)
T ss_pred             ccCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhcchhccCcceeEEEeech-----hHHHHHhhhhh
Confidence            34556789999999999999999999999999999986543321    1223457777777774     44778899999


Q ss_pred             EccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchHHHHH
Q 028890          127 SCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGKV  184 (202)
Q Consensus       127 ~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------------~~~~~Y~~sK~  184 (202)
                      |.|.+.+      .+.+.+..|+.++.+.+-.|++.+ +||++.|| .+||.+.               .+..+|...|.
T Consensus        97 hLAapasp~~y~~npvktIktN~igtln~lglakrv~-aR~l~aSTseVYgdp~~hpq~e~ywg~vnpigpr~cydegKr  175 (350)
T KOG1429|consen   97 HLAAPASPPHYKYNPVKTIKTNVIGTLNMLGLAKRVG-ARFLLASTSEVYGDPLVHPQVETYWGNVNPIGPRSCYDEGKR  175 (350)
T ss_pred             hhccCCCCcccccCccceeeecchhhHHHHHHHHHhC-ceEEEeecccccCCcccCCCccccccccCcCCchhhhhHHHH
Confidence            9998755      356788899999999999999988 79999999 6788642               24578999999


Q ss_pred             HHHHHHHHhcc
Q 028890          185 LSSDVAACQSV  195 (202)
Q Consensus       185 ~~E~~~~~~~~  195 (202)
                      .+|.++..|+.
T Consensus       176 ~aE~L~~~y~k  186 (350)
T KOG1429|consen  176 VAETLCYAYHK  186 (350)
T ss_pred             HHHHHHHHhhc
Confidence            99999999863

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=99.79  E-value=1.6e-18  Score=137.59  Aligned_cols=141  Identities=14%  Similarity=0.196  Sum_probs=108.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.++++.|+++|++|+.++|+.++...     .....++.++.+|++|++++.++++       +
T Consensus        10 ~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~d~~~i~~~~~~~~~~~~~   89 (259)
T PRK08213         10 LSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVADEADIERLAEETLERFGH   89 (259)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            457899999999999999999999999999999987543110     1123467889999999998866554       4


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc-----CCCEEEEEec-ccc-CcCC--cCCcchHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK-----GVKRFVYISA-ADF-GVAN--YLLQGYYEG  182 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~-----~~~~~v~~SS-~~~-~~~~--~~~~~Y~~s  182 (202)
                      +|++|||||....          +...+++|+.++.++++++...     +.++||++|| ..+ +.+.  .+..+|+.+
T Consensus        90 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~~~v~~sS~~~~~~~~~~~~~~~~Y~~s  169 (259)
T PRK08213         90 VDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYGRIINVASVAGLGGNPPEVMDTIAYNTS  169 (259)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCeEEEEECChhhccCCCccccCcchHHHH
Confidence            7999999985321          1345679999999999987543     5679999999 332 3222  235789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.|.+++.++
T Consensus       170 Ka~~~~~~~~~a  181 (259)
T PRK08213        170 KGAVINFTRALA  181 (259)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>PRK07775 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.1e-18  Score=138.29  Aligned_cols=140  Identities=14%  Similarity=0.110  Sum_probs=106.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ..+++++||||+|+||++++++|+++|++|+++.|+......     .....++.++.+|++|++++.++++       +
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSFVAQAEEALGE   87 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            456799999999999999999999999999999887533111     1112467888999999999887765       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||....          +...+++|+.++.++.+++.    +.+.++||++|| ..+. +......|+.+|++.
T Consensus        88 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g~iv~isS~~~~~-~~~~~~~Y~~sK~a~  166 (274)
T PRK07775         88 IEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRGDLIFVGSDVALR-QRPHMGAYGAAKAGL  166 (274)
T ss_pred             CCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECChHhcC-CCCCcchHHHHHHHH
Confidence            7999999996431          12345889999998887764    345568999999 3333 233456899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+++.+.
T Consensus       167 ~~l~~~~~  174 (274)
T PRK07775        167 EAMVTNLQ  174 (274)
T ss_pred             HHHHHHHH
Confidence            99998764

>PRK07904 short chain dehydrogenase; Provisional

Probab=99.79  E-value=4.8e-18  Score=134.78  Aligned_cols=140  Identities=19%  Similarity=0.179  Sum_probs=104.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcc-------cccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL-------RDSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ...++++||||+|+||++++++|+++| ++|++++|+++...       ......+++++.+|+.|++++.++++     
T Consensus         6 ~~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          6 GNPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            356799999999999999999999995 89999999865411       11112368999999999887655443     


Q ss_pred             -CccEeEEccccCCCC----c------cchhhhHHHHHH----HHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFGSN----S------YMYKINGTANIN----AIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~~~----~------~~~~~n~~~~~~----~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||+|.....    .      ..+++|+.++..    +++.+++.+.++||++||.....+......|+.||.+
T Consensus        86 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~~iv~isS~~g~~~~~~~~~Y~~sKaa  165 (253)
T PRK07904         86 GDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFGQIIAMSSVAGERVRRSNFVYGSTKAG  165 (253)
T ss_pred             CCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCceEEEEechhhcCCCCCCcchHHHHHH
Confidence             699999999875321    1      247889888876    5666677777899999993221233445679999999


Q ss_pred             HHHHHHHh
Q 028890          186 SSDVAACQ  193 (202)
Q Consensus       186 ~E~~~~~~  193 (202)
                      .+.+.+.+
T Consensus       166 ~~~~~~~l  173 (253)
T PRK07904        166 LDGFYLGL  173 (253)
T ss_pred             HHHHHHHH
Confidence            98877664

>PRK07825 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.6e-18  Score=138.71  Aligned_cols=139  Identities=14%  Similarity=0.094  Sum_probs=104.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+++..... ....++.++.+|+.|++++.++++       ++|++|
T Consensus         4 ~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (273)
T PRK07825          4 RGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEADLGPIDVLV   83 (273)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            467999999999999999999999999999999876432111 011257889999999998766554       579999


Q ss_pred             EccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||....          +...+++|+.++..+.+++    .+.+.++||++||.....+.+....|+.+|.+.+.+.+.
T Consensus        84 ~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~  163 (273)
T PRK07825         84 NNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRGHVVNVASLAGKIPVPGMATYCASKHAVVGFTDA  163 (273)
T ss_pred             ECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcCccccCCCCCCcchHHHHHHHHHHHHH
Confidence            99996431          2346788999888766655    456677999999943223445567899999988877665


Q ss_pred             h
Q 028890          193 Q  193 (202)
Q Consensus       193 ~  193 (202)
                      +
T Consensus       164 l  164 (273)
T PRK07825        164 A  164 (273)
T ss_pred             H
Confidence            4

>PRK06841 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.3e-18  Score=136.25  Aligned_cols=141  Identities=18%  Similarity=0.103  Sum_probs=108.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+.....  ......++.++.+|+.+++++.++++       ++|+
T Consensus        13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~d~   92 (255)
T PRK06841         13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVAEVAAQLLGGNAKGLVCDVSDSQSVEAAVAAVISAFGRIDI   92 (255)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            46789999999999999999999999999999999754311  11112456789999999998877665       5799


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||+|....          +...+++|+.++.++++++..    .+.++||++||.....+......|+.+|.+.+.+.
T Consensus        93 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~  172 (255)
T PRK06841         93 LVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGGKIVNLASQAGVVALERHVAYCASKAGVVGMT  172 (255)
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCceEEEEcchhhccCCCCCchHHHHHHHHHHHH
Confidence            9999996431          123678899999988888754    35679999999422223444578999999999888


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       173 ~~la  176 (255)
T PRK06841        173 KVLA  176 (255)
T ss_pred             HHHH
Confidence            8753

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=99.79  E-value=1.6e-18  Score=136.93  Aligned_cols=139  Identities=19%  Similarity=0.179  Sum_probs=104.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHh-------cCcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL-------DGVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~-------~~~d  123 (202)
                      +++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|+.|++++.+++       .++|
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   80 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADMIAAAAAEFGGLD   80 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcCCCC
Confidence            4689999999999999999999999999999998543111     011346889999999999665544       4589


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||++|....          ....+..|+.++..+++++    ++.+.+++|++||.....+.+....|+.+|.+.+.+
T Consensus        81 ~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~~v~~ss~~~~~~~~~~~~y~~sk~a~~~~  160 (255)
T TIGR01963        81 ILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWGRIINIASAHGLVASPFKSAYVAAKHGLIGL  160 (255)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCeEEEEEcchhhcCCCCCCchhHHHHHHHHHH
Confidence            99999986431          1234567899988777776    556778999999832222334457899999999988


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       161 ~~~~~  165 (255)
T TIGR01963       161 TKVLA  165 (255)
T ss_pred             HHHHH
Confidence            87653

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=99.79  E-value=2.1e-18  Score=135.90  Aligned_cols=140  Identities=16%  Similarity=0.195  Sum_probs=107.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......   .....++.++.+|+++++++.++++       ++|
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   82 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALGRRFLSLTADLSDIEAIKALVDSAVEEFGHID   82 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999999999999999999999999999986532111   1123468899999999998876654       589


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEec-cccCcCCcCCcchHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISA-ADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|||||...          .+...+++|+.++.++++++.+    .+ .+++|++|| ..+. +......|+.+|.+.+
T Consensus        83 ~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-~~~~~~~Y~~sKaa~~  161 (248)
T TIGR01832        83 ILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLSFQ-GGIRVPSYTASKHGVA  161 (248)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHhcc-CCCCCchhHHHHHHHH
Confidence            9999999643          1234578899999988887743    33 469999999 4443 2334568999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.++
T Consensus       162 ~~~~~la  168 (248)
T TIGR01832       162 GLTKLLA  168 (248)
T ss_pred             HHHHHHH
Confidence            9988764

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional

Probab=99.79  E-value=7e-18  Score=134.40  Aligned_cols=137  Identities=15%  Similarity=0.137  Sum_probs=107.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++++++||||+|+||+++++.|+++|++|++++|+.....    ..++.++.+|+.|++++.++++       .+|++|
T Consensus         7 l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~li   82 (266)
T PRK06171          7 LQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDGQ----HENYQFVPTDVSSAEEVNHTVAEIIEKFGRIDGLV   82 (266)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCccccc----cCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            45789999999999999999999999999999998765421    2468889999999998887665       479999


Q ss_pred             EccccCCC-------------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          127 SCVGGFGS-------------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       127 ~~a~~~~~-------------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                      ||||....                   +...+++|+.++..+++++..    .+.++||++||.....+......|+.+|
T Consensus        83 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  162 (266)
T PRK06171         83 NNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDGVIVNMSSEAGLEGSEGQSCYAATK  162 (266)
T ss_pred             ECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCCchhHHHH
Confidence            99995321                   123678899999988887753    3446899999943323344567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       163 ~a~~~l~~~la  173 (266)
T PRK06171        163 AALNSFTRSWA  173 (266)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>PRK05876 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.1e-18  Score=138.41  Aligned_cols=140  Identities=18%  Similarity=0.090  Sum_probs=104.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|++++.++++       +
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   83 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHLADEAFRLLGH   83 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999987543111     1112357889999999998887765       4


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||...          .+...+++|+.++.++++++.    +.+ .+++|++||...-.+..+...|+.+|.+.
T Consensus        84 id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  163 (275)
T PRK05876         84 VDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAGLVPNAGLGAYGVAKYGV  163 (275)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhhccCCCCCchHHHHHHHH
Confidence            799999999532          123457899999998888864    343 46899999932223445567899999986


Q ss_pred             HHHHHHh
Q 028890          187 SDVAACQ  193 (202)
Q Consensus       187 E~~~~~~  193 (202)
                      +.+.+.+
T Consensus       164 ~~~~~~l  170 (275)
T PRK05876        164 VGLAETL  170 (275)
T ss_pred             HHHHHHH
Confidence            6555543

>PRK07454 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.8e-18  Score=135.83  Aligned_cols=139  Identities=14%  Similarity=0.108  Sum_probs=106.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++||||+|+||++++++|+++|++|++++|++.+...     .....++.++.+|++|++++.++++       ++
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSNPEAIAPGIAELLEQFGCP   84 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            57899999999999999999999999999999997643211     1113478899999999998877765       48


Q ss_pred             cEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||+|...          .+...+++|+.++.++++.+    .+.+.+++|++||.....+......|+.+|.+.+.
T Consensus        85 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~~~~~  164 (241)
T PRK07454         85 DVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGGLIINVSSIAARNAFPQWGAYCVSKAALAA  164 (241)
T ss_pred             CEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCcCCCCccHHHHHHHHHHH
Confidence            99999999642          12345678899888777665    44556799999993222234456789999999998


Q ss_pred             HHHHh
Q 028890          189 VAACQ  193 (202)
Q Consensus       189 ~~~~~  193 (202)
                      +.+.+
T Consensus       165 ~~~~~  169 (241)
T PRK07454        165 FTKCL  169 (241)
T ss_pred             HHHHH
Confidence            88765

>PRK07102 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.4e-18  Score=135.31  Aligned_cols=139  Identities=19%  Similarity=0.146  Sum_probs=106.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc----CccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD----GVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~v  125 (202)
                      ||+++||||+|+||.++++.|+++|++|++++|++++...      .....+++++++|+.|++++.++++    .+|++
T Consensus         1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~v   80 (243)
T PRK07102          1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDIV   80 (243)
T ss_pred             CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCEE
Confidence            5789999999999999999999999999999998643211      1113478999999999998887765    46999


Q ss_pred             EEccccCCCC----------ccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFGSN----------SYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~~~----------~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||+|.....          ...+++|+.++.++++++..    .+.++++++||.....+......|+.+|.+.+.+.+
T Consensus        81 v~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~  160 (243)
T PRK07102         81 LIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSGTIVGISSVAGDRGRASNYVYGSAKAALTAFLS  160 (243)
T ss_pred             EECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCEEEEEecccccCCCCCCcccHHHHHHHHHHHH
Confidence            9999864311          23568899999988877643    466799999994222233445679999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .+.
T Consensus       161 ~l~  163 (243)
T PRK07102        161 GLR  163 (243)
T ss_pred             HHH
Confidence            763

>PRK07060 short chain dehydrogenase; Provisional

Probab=99.79  E-value=1.4e-18  Score=136.54  Aligned_cols=141  Identities=15%  Similarity=0.124  Sum_probs=107.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---CccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~  130 (202)
                      .++++++||||+|+||+++++.|+++|++|++++|+..+........+..++.+|+.|++++.++++   ++|+||||+|
T Consensus         7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~ag   86 (245)
T PRK07060          7 FSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNCAG   86 (245)
T ss_pred             cCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            3568999999999999999999999999999999975432111111246788999999998888776   4899999999


Q ss_pred             cCC----------CCccchhhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFG----------SNSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~----------~~~~~~~~n~~~~~~~~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ...          ++...+.+|+.++.++++++.+.    + .++||++||.....+......|+.+|.++|.+++.++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~y~~sK~a~~~~~~~~a  165 (245)
T PRK07060         87 IASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVGLPDHLAYCASKAALDAITRVLC  165 (245)
T ss_pred             CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCCCCCCcHhHHHHHHHHHHHHHHH
Confidence            642          12335668999999888887542    2 3699999993222233456789999999999888764

>PRK07890 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2.1e-18  Score=136.58  Aligned_cols=140  Identities=13%  Similarity=0.079  Sum_probs=108.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       ++
T Consensus         4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~   83 (258)
T PRK07890          4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDITDEDQCANLVALALERFGRV   83 (258)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCCCHHHHHHHHHHHHHHcCCc
Confidence            56899999999999999999999999999999997643111     0113467899999999998877664       57


Q ss_pred             cEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||||....           +...+++|+.++..+++++...   ..++||++||.....+..+...|+.+|.+.+.
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a~~~  163 (258)
T PRK07890         84 DALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGGSIVMINSMVLRHSQPKYGAYKMAKGALLA  163 (258)
T ss_pred             cEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCEEEEEechhhccCCCCcchhHHHHHHHHH
Confidence            999999986421           2345788999999999888642   23599999994333344556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       164 l~~~~a  169 (258)
T PRK07890        164 ASQSLA  169 (258)
T ss_pred             HHHHHH
Confidence            998764

>PRK05693 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2e-18  Score=138.26  Aligned_cols=138  Identities=14%  Similarity=0.088  Sum_probs=104.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~~  128 (202)
                      ||+++||||+|+||++++++|+++|++|++++|+..... .....++.++.+|+.|++++.++++       ++|++|||
T Consensus         1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~-~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~   79 (274)
T PRK05693          1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVE-ALAAAGFTAVQLDVNDGAALARLAEELEAEHGGLDVLINN   79 (274)
T ss_pred             CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHCCCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            478999999999999999999999999999998754321 1112357889999999988877664       58999999


Q ss_pred             cccCC----------CCccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          129 VGGFG----------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       129 a~~~~----------~~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ||...          .+...+++|+.++.++++++..   .+.+++|++||.....+......|+.+|.+.+.+.+.+.
T Consensus        80 ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~al~~~~~~l~  158 (274)
T PRK05693         80 AGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALR  158 (274)
T ss_pred             CCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCEEEEECCccccCCCCCccHHHHHHHHHHHHHHHHH
Confidence            99532          1234678999999888887643   234689999983222233445789999999999887653

>PRK08339 short chain dehydrogenase; Provisional

Probab=99.79  E-value=2e-18  Score=137.62  Aligned_cols=141  Identities=13%  Similarity=0.088  Sum_probs=106.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..+...      .....++.++.+|+.|+++++++++      +
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            357899999999999999999999999999999997543111      1113468899999999998888775      4


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||+|...          ++...+++|+.+...+.++    +++.+.+++|++||.....+......|+.+|.+.+
T Consensus        86 iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g~Ii~isS~~~~~~~~~~~~y~asKaal~  165 (263)
T PRK08339         86 PDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFGRIIYSTSVAIKEPIPNIALSNVVRISMA  165 (263)
T ss_pred             CcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcCccccCCCCcchhhHHHHHHHH
Confidence            899999998532          2345678888877765554    45556679999999433233344567999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       166 ~l~~~la  172 (263)
T PRK08339        166 GLVRTLA  172 (263)
T ss_pred             HHHHHHH
Confidence            9888753

>PRK06128 oxidoreductase; Provisional

Probab=99.78  E-value=4.4e-18  Score=138.13  Aligned_cols=140  Identities=13%  Similarity=0.109  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-c------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-R------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|+++.++..... .      .....++.++.+|+.|+++++++++      
T Consensus        53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  132 (300)
T PRK06128         53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQLVERAVKEL  132 (300)
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999988776543210 0      1123467889999999988877664      


Q ss_pred             -CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEec-cccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISA-ADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...           .+...+++|+.++.++++++...  ..++||++|| ..+. +......|+.+|.+
T Consensus       133 g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~~-~~~~~~~Y~asK~a  211 (300)
T PRK06128        133 GGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSYQ-PSPTLLDYASTKAA  211 (300)
T ss_pred             CCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCccccC-CCCCchhHHHHHHH
Confidence             5899999999532           12457889999999999998653  2259999999 3333 33445679999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.+.
T Consensus       212 ~~~~~~~la  220 (300)
T PRK06128        212 IVAFTKALA  220 (300)
T ss_pred             HHHHHHHHH
Confidence            999998764

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=99.78  E-value=2.3e-18  Score=136.99  Aligned_cols=141  Identities=16%  Similarity=0.167  Sum_probs=106.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|+.|+++++++++       ++|+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            357899999999999999999999999999999997543211  1123467889999999988877664       5899


Q ss_pred             eEEccccCCC---------------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          125 VISCVGGFGS---------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       125 vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|||||....               +...+++|+.++..+++++...   ..+++|++||...-.+......|+.+|.+.
T Consensus        84 li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sK~a~  163 (263)
T PRK06200         84 FVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLSNSSFYPGGGGPLYTASKHAV  163 (263)
T ss_pred             EEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCCchhHHHHHHH
Confidence            9999996321               2235678999988888777532   225899999932222334456899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.++
T Consensus       164 ~~~~~~la  171 (263)
T PRK06200        164 VGLVRQLA  171 (263)
T ss_pred             HHHHHHHH
Confidence            99988764

>PRK06500 short chain dehydrogenase; Provisional

Probab=99.78  E-value=2.9e-18  Score=135.04  Aligned_cols=140  Identities=17%  Similarity=0.090  Sum_probs=105.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+.....  ......++.++.+|+.|.+++..+++       ++|++
T Consensus         5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (249)
T PRK06500          5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDAV   84 (249)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            4679999999999999999999999999999998753211  11123467889999999887665543       58999


Q ss_pred             EEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          126 ISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       126 i~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |||||....          +...+++|+.++.++++++...  ...++|++||.....+......|+.+|.+.|.+++.+
T Consensus        85 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~S~~~~~~~~~~~~Y~~sK~a~~~~~~~l  164 (249)
T PRK06500         85 FINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNGSINAHIGMPNSSVYAASKAALLSLAKTL  164 (249)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEechHhccCCCCccHHHHHHHHHHHHHHHH
Confidence            999986431          2346789999999999998642  2357888888322222345678999999999999776


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      .
T Consensus       165 a  165 (249)
T PRK06500        165 S  165 (249)
T ss_pred             H
Confidence            4

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.78  E-value=1.7e-18  Score=137.08  Aligned_cols=140  Identities=11%  Similarity=0.168  Sum_probs=107.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++|+++||||+++||++++++|+++|++|++++|+..+...   .....++.++.+|+.|++++.++++       ++|
T Consensus         6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~iD   85 (251)
T PRK12481          6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAPETQAQVEALGRKFHFITADLIQQKDIDSIVSQAVEVMGHID   85 (251)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHHHHHHcCCCC
Confidence            357899999999999999999999999999998886432111   1123468899999999998888775       489


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcC-CCEEEEEec-cccCcCCcCCcchHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISA-ADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|||||...          ++...+++|+.++..+.+++.    +.+ .+++|++|| ..+. +......|+.+|.+.+
T Consensus        86 ~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~-~~~~~~~Y~asK~a~~  164 (251)
T PRK12481         86 ILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLSFQ-GGIRVPSYTASKSAVM  164 (251)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhhcC-CCCCCcchHHHHHHHH
Confidence            9999999642          234567899999988877664    333 369999999 3332 2334568999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       165 ~l~~~la  171 (251)
T PRK12481        165 GLTRALA  171 (251)
T ss_pred             HHHHHHH
Confidence            9988754

>PRK07035 short chain dehydrogenase; Provisional

Probab=99.78  E-value=4e-18  Score=134.73  Aligned_cols=141  Identities=11%  Similarity=0.012  Sum_probs=107.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+......     .....++.++.+|+.|.+++.++++       .
T Consensus         6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   85 (252)
T PRK07035          6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIGEMEQIDALFAHIRERHGR   85 (252)
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            456899999999999999999999999999999987543111     0112457889999999988877665       4


Q ss_pred             ccEeEEccccCC---C--------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFG---S--------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~---~--------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||...   +        +...+++|+.++..+++++    ++.+.++++++||.....+..+...|+.+|++.
T Consensus        86 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~al  165 (252)
T PRK07035         86 LDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGGSIVNVASVNGVSPGDFQGIYSITKAAV  165 (252)
T ss_pred             CCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCcEEEEECchhhcCCCCCCcchHHHHHHH
Confidence            899999998532   1        2346788999998777665    445567999999842223445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++++.
T Consensus       166 ~~~~~~l~  173 (252)
T PRK07035        166 ISMTKAFA  173 (252)
T ss_pred             HHHHHHHH
Confidence            99999874

>PRK12935 acetoacetyl-CoA reductase; Provisional

Probab=99.78  E-value=3.8e-18  Score=134.34  Aligned_cols=139  Identities=14%  Similarity=0.107  Sum_probs=105.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc------cCCCceeEEEccCCCHhhHHHHhcC-------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALDG-------  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~------~~~~~~~~~~~D~~~~~~~~~~~~~-------  121 (202)
                      ++++++||||+|+||++++++|+++|++|+++.++.......      ....++.++.+|+.|++++.++++.       
T Consensus         5 ~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (247)
T PRK12935          5 NGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEEAVNHFGK   84 (247)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            568999999999999999999999999998765543221110      1124688999999999988887764       


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|+||||||....          +...+++|+.++.++++++..    .+.+++|++||.....+..+...|+.+|.+.+
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  164 (247)
T PRK12935         85 VDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEGRIISISSIIGQAGGFGQTNYSAAKAGML  164 (247)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchhhcCCCCCCcchHHHHHHHH
Confidence            7999999996432          234578999999988888753    34569999999322223345679999999999


Q ss_pred             HHHHHh
Q 028890          188 DVAACQ  193 (202)
Q Consensus       188 ~~~~~~  193 (202)
                      .+++.+
T Consensus       165 ~~~~~l  170 (247)
T PRK12935        165 GFTKSL  170 (247)
T ss_pred             HHHHHH
Confidence            888765

>PRK12742 oxidoreductase; Provisional

Probab=99.78  E-value=2.7e-18  Score=134.36  Aligned_cols=140  Identities=18%  Similarity=0.157  Sum_probs=104.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc-CCCceeEEEccCCCHhhHHHHhc---CccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a  129 (202)
                      .++++++||||+|+||++++++|+++|++|+++.|+........ ...++.++.+|++|.+++.+.++   ++|++||||
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a   83 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA   83 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence            35689999999999999999999999999988766432211111 11246788999999988877665   489999999


Q ss_pred             ccCC----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEecccc-CcCCcCCcchHHHHHHHHHHHHHh
Q 028890          130 GGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADF-GVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       130 ~~~~----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~-~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |...          ++...+++|+.++..+++.+...  +.+++|++||... ..+..+...|+.+|.+.|.+++.+
T Consensus        84 g~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sKaa~~~~~~~l  160 (237)
T PRK12742         84 GIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDRMPVAGMAAYAASKSALQGMARGL  160 (237)
T ss_pred             CCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEeccccccCCCCCCcchHHhHHHHHHHHHHH
Confidence            8632          12456788999999887666543  2469999999422 234456778999999999998875

>PRK08628 short chain dehydrogenase; Provisional

Probab=99.78  E-value=4.5e-18  Score=134.84  Aligned_cols=141  Identities=13%  Similarity=0.072  Sum_probs=108.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|++++|++.....    .....++.++.+|+++++++.++++       ++
T Consensus         5 l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   84 (258)
T PRK08628          5 LKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVEQTVAKFGRI   84 (258)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence            467899999999999999999999999999999987654210    1123568899999999998887775       57


Q ss_pred             cEeEEccccCCC---------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          123 TAVISCVGGFGS---------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       123 d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      |+||||+|....         +...+++|+.++.++.+.+.+   .+.++|+++||...-.+..+...|+.+|.+.|.++
T Consensus        85 d~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~  164 (258)
T PRK08628         85 DGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRGAIVNISSKTALTGQGGTSGYAAAKGAQLALT  164 (258)
T ss_pred             CEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCcEEEEECCHHhccCCCCCchhHHHHHHHHHHH
Confidence            999999995321         234567889998888777643   23468999999322233445678999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       165 ~~l~  168 (258)
T PRK08628        165 REWA  168 (258)
T ss_pred             HHHH
Confidence            8764

>PRK08589 short chain dehydrogenase; Validated

Probab=99.78  E-value=4.2e-18  Score=136.37  Aligned_cols=139  Identities=11%  Similarity=0.076  Sum_probs=105.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+ +....     .....++.++.+|+.|++++.++++       +
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNGGKAKAYHVDISDEQQVKDFASEIKEQFGR   82 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999998 32111     1113468899999999988877665       4


Q ss_pred             ccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||....           +...+++|+.++..+++++    ++.+ +++|++||.....+......|+.+|.+.
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaal  161 (272)
T PRK08589         83 VDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-GSIINTSSFSGQAADLYRSGYNAAKGAV  161 (272)
T ss_pred             cCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEeCchhhcCCCCCCchHHHHHHHH
Confidence            7999999996421           1345678888887666664    3444 6999999932222334457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.++
T Consensus       162 ~~l~~~la  169 (272)
T PRK08589        162 INFTKSIA  169 (272)
T ss_pred             HHHHHHHH
Confidence            99998864

>PRK06114 short chain dehydrogenase; Provisional

Probab=99.78  E-value=3.5e-18  Score=135.41  Aligned_cols=141  Identities=17%  Similarity=0.156  Sum_probs=107.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|+.|++++.++++       
T Consensus         6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g   85 (254)
T PRK06114          6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRAAVARTEAELG   85 (254)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999987543111      1113467889999999998887665       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cc-cCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISA-AD-FGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~-~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||....          +...+++|+.++..+++++    ++.+.+++|++|| .. .+.+......|+.+|+
T Consensus        86 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sKa  165 (254)
T PRK06114         86 ALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGGSIVNIASMSGIIVNRGLLQAHYNASKA  165 (254)
T ss_pred             CCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCCcchHHHHHH
Confidence            37999999996431          2446789999998776665    3455579999999 32 2233223578999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+++.++
T Consensus       166 a~~~l~~~la  175 (254)
T PRK06114        166 GVIHLSKSLA  175 (254)
T ss_pred             HHHHHHHHHH
Confidence            9999888764

>PRK12367 short chain dehydrogenase; Provisional

Probab=99.78  E-value=3.3e-18  Score=135.15  Aligned_cols=136  Identities=14%  Similarity=0.119  Sum_probs=98.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|+..............++.+|+.|.+++.+.+.++|++|||||..
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~iDilVnnAG~~   90 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDKQLASLDVLILNHGIN   90 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHHhcCCCCEEEECCccC
Confidence            34678999999999999999999999999999999876221111111223678899999999999998999999999963


Q ss_pred             C-------CCccchhhhHHHHHHHHHHHHHc-------CCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          133 G-------SNSYMYKINGTANINAIRAASEK-------GVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       133 ~-------~~~~~~~~n~~~~~~~~~~~~~~-------~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      .       ++...+++|+.++.++++++...       +.+.++..||. .+..+.....|+.||++.+.+
T Consensus        91 ~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~-a~~~~~~~~~Y~aSKaal~~~  160 (245)
T PRK12367         91 PGGRQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSE-AEIQPALSPSYEISKRLIGQL  160 (245)
T ss_pred             CcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecc-cccCCCCCchhHHHHHHHHHH
Confidence            2       23567899999999998876432       12234444442 222223456799999998643

>PRK08643 acetoin reductase; Validated

Probab=99.78  E-value=2.6e-18  Score=136.04  Aligned_cols=139  Identities=20%  Similarity=0.198  Sum_probs=104.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      +++++||||+|+||.++++.|+++|++|++++|+.+....     .....++.++.+|+.|++++.++++       ++|
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   81 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVRQVVDTFGDLN   81 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5799999999999999999999999999999987643111     1112467889999999998877665       589


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|||||....          +...+++|+.++..+++.+.+    .+ .+++|++||.....+......|+.+|.+.+.
T Consensus        82 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~  161 (256)
T PRK08643         82 VVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVVGNPELAVYSSTKFAVRG  161 (256)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECccccccCCCCCchhHHHHHHHHH
Confidence            99999986421          134577899998876666543    22 3589999994222233445789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       162 ~~~~la  167 (256)
T PRK08643        162 LTQTAA  167 (256)
T ss_pred             HHHHHH
Confidence            887754

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=99.78  E-value=3.2e-18  Score=135.45  Aligned_cols=141  Identities=11%  Similarity=0.065  Sum_probs=108.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ..+++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|+.|++++.++++       +
T Consensus         7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   86 (254)
T PRK08085          7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVTHKQEVEAAIEHIEKDIGP   86 (254)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            357899999999999999999999999999999987543111     0112467788999999998887664       4


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||+|...          ++...+++|+.++..+++++.+    .+.++||++||.....+......|+.+|.+.+
T Consensus        87 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~  166 (254)
T PRK08085         87 IDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAGKIINICSMQSELGRDTITPYAASKGAVK  166 (254)
T ss_pred             CCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccchhccCCCCCcchHHHHHHHH
Confidence            799999999532          1234678999999888877653    44579999999422233445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       167 ~~~~~la  173 (254)
T PRK08085        167 MLTRGMC  173 (254)
T ss_pred             HHHHHHH
Confidence            9998863

>PRK09186 flagellin modification protein A; Provisional

Probab=99.78  E-value=3.9e-18  Score=134.91  Aligned_cols=140  Identities=13%  Similarity=0.128  Sum_probs=101.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-------cccCCCceeEEEccCCCHhhHHHHhcC------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-------RDSWANNVIWHQGNLLSSDSWKEALDG------  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~------  121 (202)
                      ++|+++||||+|+||+++++.|+++|++|++++|+.+...       .......+.++.+|+.|++++.++++.      
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~   82 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG   82 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999999999998764421       011123567789999999998887763      


Q ss_pred             -ccEeEEccccCCC-------------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEec-cccCcC---------C
Q 028890          122 -VTAVISCVGGFGS-------------NSYMYKINGTANINAIRA----ASEKGVKRFVYISA-ADFGVA---------N  173 (202)
Q Consensus       122 -~d~vi~~a~~~~~-------------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS-~~~~~~---------~  173 (202)
                       +|++||||+....             +...+++|+.++..++++    +++.+.++||++|| ..+..+         .
T Consensus        83 ~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~  162 (256)
T PRK09186         83 KIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGGNLVNISSIYGVVAPKFEIYEGTSM  162 (256)
T ss_pred             CccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCceEEEEechhhhccccchhcccccc
Confidence             7999999974321             123456777777655544    45566779999999 322211         1


Q ss_pred             cCCcchHHHHHHHHHHHHHhc
Q 028890          174 YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .....|+.+|.+.+.+.+.++
T Consensus       163 ~~~~~Y~~sK~a~~~l~~~la  183 (256)
T PRK09186        163 TSPVEYAAIKAGIIHLTKYLA  183 (256)
T ss_pred             CCcchhHHHHHHHHHHHHHHH
Confidence            122369999999999987653

>PRK12939 short chain dehydrogenase; Provisional

Probab=99.78  E-value=3.7e-18  Score=134.43  Aligned_cols=141  Identities=17%  Similarity=0.147  Sum_probs=107.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|++++...     .....++.++.+|+.|++++.++++       +
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   84 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGG   84 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999887543111     1113468899999999998887764       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||+|....          +...++.|+.++.++++++.+    .+.+++|++||.....+......|+.+|.+.|
T Consensus        85 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sK~~~~  164 (250)
T PRK12939         85 LDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRGRIVNLASDTALWGAPKLGAYVASKGAVI  164 (250)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEECchhhccCCCCcchHHHHHHHHH
Confidence            8999999996431          233567899999988887743    34459999999432233344567999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       165 ~~~~~l~  171 (250)
T PRK12939        165 GMTRSLA  171 (250)
T ss_pred             HHHHHHH
Confidence            9988753

>PRK06196 oxidoreductase; Provisional

Probab=99.78  E-value=2.2e-18  Score=140.85  Aligned_cols=141  Identities=15%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc-CCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+...... .-.++.++.+|++|.+++.++++       ++|++
T Consensus        24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~l  103 (315)
T PRK06196         24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRIDIL  103 (315)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCCEE
Confidence            35689999999999999999999999999999999854321110 01247899999999998877664       58999


Q ss_pred             EEccccCCC--------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEecccc--Cc----------CCcCCcchHH
Q 028890          126 ISCVGGFGS--------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADF--GV----------ANYLLQGYYE  181 (202)
Q Consensus       126 i~~a~~~~~--------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~--~~----------~~~~~~~Y~~  181 (202)
                      |||||....        ++..+++|+.++..+.+.    +++.+.+++|++||...  +.          +..+...|+.
T Consensus       104 i~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~~iV~vSS~~~~~~~~~~~~~~~~~~~~~~~~Y~~  183 (315)
T PRK06196        104 INNAGVMACPETRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGARVVALSSAGHRRSPIRWDDPHFTRGYDKWLAYGQ  183 (315)
T ss_pred             EECCCCCCCCCccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEECCHHhccCCCCccccCccCCCChHHHHHH
Confidence            999996431        244678999997766554    44555579999999321  11          1123457999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      ||.+.+.+.+.++
T Consensus       184 SK~a~~~~~~~la  196 (315)
T PRK06196        184 SKTANALFAVHLD  196 (315)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887653

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=99.78  E-value=5.2e-18  Score=136.01  Aligned_cols=141  Identities=16%  Similarity=0.222  Sum_probs=105.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++++|+.|++++.++++       +
T Consensus         8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   87 (278)
T PRK08277          8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDFGP   87 (278)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999997543111     1112468899999999988877654       6


Q ss_pred             ccEeEEccccCCC-------------------------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcC
Q 028890          122 VTAVISCVGGFGS-------------------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVA  172 (202)
Q Consensus       122 ~d~vi~~a~~~~~-------------------------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~  172 (202)
                      +|++|||||....                         +...+++|+.++..+++++    .+.+.++||++||.....+
T Consensus        88 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~  167 (278)
T PRK08277         88 CDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVGRKGGNIINISSMNAFTP  167 (278)
T ss_pred             CCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhcCC
Confidence            8999999995321                         2245678888887655544    4455679999999322233


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ......|+.+|.+.+.+++.+.
T Consensus       168 ~~~~~~Y~~sK~a~~~l~~~la  189 (278)
T PRK08277        168 LTKVPAYSAAKAAISNFTQWLA  189 (278)
T ss_pred             CCCCchhHHHHHHHHHHHHHHH
Confidence            4456789999999999988763

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=99.78  E-value=5.4e-18  Score=134.55  Aligned_cols=141  Identities=13%  Similarity=0.148  Sum_probs=107.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-cc---ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-LR---DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||.+++++|+++|++|+++.|+.... ..   .....++.++.+|+.+++++.++++       ++
T Consensus        13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~i   92 (258)
T PRK06935         13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKVVKEALEEFGKI   92 (258)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999999999999873211 11   1123468899999999998888776       57


Q ss_pred             cEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||+|...          .+...+++|+.++..+.+++    ++.+.+++|++||.....+......|+.+|.+.+.
T Consensus        93 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~  172 (258)
T PRK06935         93 DILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSGKIINIASMLSFQGGKFVPAYTASKHGVAG  172 (258)
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCeEEEEECCHHhccCCCCchhhHHHHHHHHH
Confidence            99999999643          12346778989987776655    34556799999993222233445689999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.++
T Consensus       173 ~~~~la  178 (258)
T PRK06935        173 LTKAFA  178 (258)
T ss_pred             HHHHHH
Confidence            988864

>PRK09242 tropinone reductase; Provisional

Probab=99.78  E-value=4.6e-18  Score=134.77  Aligned_cols=141  Identities=16%  Similarity=0.129  Sum_probs=108.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------cc-CCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~-~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....      .. ...++.++.+|+.+++++.++++      
T Consensus         7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (257)
T PRK09242          7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHW   86 (257)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999999999999999999999999999987543111      01 13468889999999988766554      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||+|...          ++...+.+|+.++..+++++.    +.+.+++|++||.....+......|+.+|.+
T Consensus        87 g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sK~a  166 (257)
T PRK09242         87 DGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSVSGLTHVRSGAPYGMTKAA  166 (257)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECccccCCCCCCCcchHHHHHH
Confidence             5799999999632          123467889999998888764    4556799999994322344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.++
T Consensus       167 ~~~~~~~la  175 (257)
T PRK09242        167 LLQMTRNLA  175 (257)
T ss_pred             HHHHHHHHH
Confidence            999988753

>PRK05867 short chain dehydrogenase; Provisional

Probab=99.77  E-value=3.1e-18  Score=135.56  Aligned_cols=141  Identities=13%  Similarity=0.131  Sum_probs=106.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|+.|++++.++++       +
T Consensus         7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T PRK05867          7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTSMLDQVTAELGG   86 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999999999987543111     1112467889999999998877665       6


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEecc-cc-CcCCcCCcchHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAA-DF-GVANYLLQGYYEGKV  184 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~-~~-~~~~~~~~~Y~~sK~  184 (202)
                      +|++|||||...          .+...+++|+.++..+.+++..    .+ .+++|++||. .. ...+.....|+.+|.
T Consensus        87 id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~Y~asKa  166 (253)
T PRK05867         87 IDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSGHIINVPQQVSHYCASKA  166 (253)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHhcCCCCCCCccchHHHHH
Confidence            899999999643          1234568999999988887643    22 2479999883 22 111223468999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+++.++
T Consensus       167 al~~~~~~la  176 (253)
T PRK05867        167 AVIHLTKAMA  176 (253)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=99.77  E-value=7.9e-18  Score=132.08  Aligned_cols=140  Identities=19%  Similarity=0.164  Sum_probs=106.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+|+||+++++.|+++|++|+++.|+......      .....++.++.+|+.|++++.++++       +
T Consensus         4 ~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   83 (248)
T PRK05557          4 EGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGDVSDAESVERAVDEAKAEFGG   83 (248)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56799999999999999999999999999888887543111      1123578889999999998877665       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|+|||++|....          +...+.+|+.++.++++++..    .+.++|+++||.....+......|+.+|.+.+
T Consensus        84 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~iss~~~~~~~~~~~~y~~sk~a~~  163 (248)
T PRK05557         84 VDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSGRIINISSVVGLMGNPGQANYAASKAGVI  163 (248)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEEcccccCcCCCCCchhHHHHHHHH
Confidence            8999999986431          123467889999888888754    35578999999422223344678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       164 ~~~~~~a  170 (248)
T PRK05557        164 GFTKSLA  170 (248)
T ss_pred             HHHHHHH
Confidence            8887653

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=99.77  E-value=3.7e-18  Score=135.40  Aligned_cols=139  Identities=16%  Similarity=0.180  Sum_probs=104.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c---cC-CCceeEEEccCCCHhhHHHHhc-------C
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D---SW-ANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~---~~-~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      +++++||||+|+||+++++.|+++|++|++++|+......   .   .. ..++.++.+|++|++++.++++       +
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   81 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGVDEIFGR   81 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999999999987543111   0   01 1468899999999988777664       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||....          +...+++|+.++..+++++.+    .+ .+++|++||.....+.....+|+.+|.+.
T Consensus        82 id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sKaa~  161 (259)
T PRK12384         82 VDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFGG  161 (259)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccccCCCCCchhHHHHHHH
Confidence            7999999985321          234568899998877776643    44 35999999832222334457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       162 ~~l~~~la  169 (259)
T PRK12384        162 VGLTQSLA  169 (259)
T ss_pred             HHHHHHHH
Confidence            98888764

>PRK05854 short chain dehydrogenase; Provisional

Probab=99.77  E-value=3.6e-18  Score=139.55  Aligned_cols=141  Identities=14%  Similarity=0.080  Sum_probs=105.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------cc-CCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~-~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+++||.+++++|+++|++|+++.|+..+...      .. ...++.++.+|+.|.+++.++++      
T Consensus        12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~   91 (313)
T PRK05854         12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG   91 (313)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999997543110      11 12368899999999998887665      


Q ss_pred             -CccEeEEccccCCC---------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccc--cCc----------CCcC
Q 028890          121 -GVTAVISCVGGFGS---------NSYMYKINGTANINAIRAASE---KGVKRFVYISAAD--FGV----------ANYL  175 (202)
Q Consensus       121 -~~d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~--~~~----------~~~~  175 (202)
                       ++|++|||||....         ++..+.+|+.++..+.+.+..   .+.+++|++||..  ++.          ...+
T Consensus        92 ~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~riv~vsS~~~~~~~~~~~~~~~~~~~~~  171 (313)
T PRK05854         92 RPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRARVTSQSSIAARRGAINWDDLNWERSYAG  171 (313)
T ss_pred             CCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCCCeEEEechhhcCCCcCcccccccccCcc
Confidence             48999999996432         234678899998877766542   2346999999932  221          1123


Q ss_pred             CcchHHHHHHHHHHHHHhc
Q 028890          176 LQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       176 ~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ...|+.||.+.+.+.++++
T Consensus       172 ~~~Y~~SK~a~~~~~~~la  190 (313)
T PRK05854        172 MRAYSQSKIAVGLFALELD  190 (313)
T ss_pred             hhhhHHHHHHHHHHHHHHH
Confidence            4679999999999888764

>PRK06057 short chain dehydrogenase; Provisional

Probab=99.77  E-value=4e-18  Score=135.08  Aligned_cols=139  Identities=14%  Similarity=0.073  Sum_probs=102.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+...........+..++.+|+.|+++++++++       ++|++|
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999999999999999999999999999999875432111111123688999999998887776       479999


Q ss_pred             EccccCCC------------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc--ccCcCCcCCcchHHHHHHHHH
Q 028890          127 SCVGGFGS------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAA--DFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       127 ~~a~~~~~------------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~--~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ||||....            +...+++|+.++..+++.+    ++.+.+++|++||.  .++. ..+...|+.+|++.+.
T Consensus        85 ~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g~iv~~sS~~~~~g~-~~~~~~Y~~sKaal~~  163 (255)
T PRK06057         85 NNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKGSIINTASFVAVMGS-ATSQISYTASKGGVLA  163 (255)
T ss_pred             ECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCcEEEEEcchhhccCC-CCCCcchHHHHHHHHH
Confidence            99986421            2345678999888776665    34555699999983  2332 2345679999988877


Q ss_pred             HHHHh
Q 028890          189 VAACQ  193 (202)
Q Consensus       189 ~~~~~  193 (202)
                      +.+.+
T Consensus       164 ~~~~l  168 (255)
T PRK06057        164 MSREL  168 (255)
T ss_pred             HHHHH
Confidence            76653

>PLN02260 probable rhamnose biosynthetic enzyme

Probab=99.77  E-value=6.8e-18  Score=150.67  Aligned_cols=121  Identities=17%  Similarity=0.246  Sum_probs=94.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~  131 (202)
                      ...|+|+||||+||||++|++.|.++|++|...                   .+|++|.+.+...+.  ++|+|||+|+.
T Consensus       378 ~~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~-------------------~~~l~d~~~v~~~i~~~~pd~Vih~Aa~  438 (668)
T PLN02260        378 KPSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG-------------------KGRLEDRSSLLADIRNVKPTHVFNAAGV  438 (668)
T ss_pred             CCCceEEEECCCchHHHHHHHHHHhCCCeEEee-------------------ccccccHHHHHHHHHhhCCCEEEECCcc
Confidence            356799999999999999999999999987311                   135778888877776  68999999996


Q ss_pred             CC---------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc----------C------CcC-CcchHHHHH
Q 028890          132 FG---------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV----------A------NYL-LQGYYEGKV  184 (202)
Q Consensus       132 ~~---------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~----------~------~~~-~~~Y~~sK~  184 (202)
                      .+         .+...+++|+.++.+++++|++.+++ ++++|| .+|+.          +      +.+ .++|+.+|.
T Consensus       439 ~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~-~v~~Ss~~v~~~~~~~~~~~~~p~~E~~~~~~~~~~Yg~sK~  517 (668)
T PLN02260        439 TGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLL-MMNFATGCIFEYDAKHPEGSGIGFKEEDKPNFTGSFYSKTKA  517 (668)
T ss_pred             cCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCe-EEEEcccceecCCcccccccCCCCCcCCCCCCCCChhhHHHH
Confidence            53         23456789999999999999999985 566666 55431          0      112 368999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      ++|++++.|.
T Consensus       518 ~~E~~~~~~~  527 (668)
T PLN02260        518 MVEELLREYD  527 (668)
T ss_pred             HHHHHHHhhh
Confidence            9999998874

>PRK12747 short chain dehydrogenase; Provisional

Probab=99.77  E-value=6e-18  Score=133.75  Aligned_cols=140  Identities=18%  Similarity=0.111  Sum_probs=102.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc--------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~--------  120 (202)
                      ++++++||||+|+||.+++++|+++|++|++..++......      ......+..+.+|+.+.+++..+++        
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQN   82 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEecccCCHHHHHHHHHHHHHHhhh
Confidence            46899999999999999999999999999887543221111      1112456788999999876654332        


Q ss_pred             -----CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 -----GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 -----~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                           ++|++|||||....          +...+++|+.++..+++++...  +.++||++||.....+......|+.||
T Consensus        83 ~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  162 (252)
T PRK12747         83 RTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMTK  162 (252)
T ss_pred             hcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCcccccCCCCchhHHHHH
Confidence                 58999999995321          2456679999999988877543  235999999943323344557899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      ++.+.+++.++
T Consensus       163 aa~~~~~~~la  173 (252)
T PRK12747        163 GAINTMTFTLA  173 (252)
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>PRK05650 short chain dehydrogenase; Provisional

Probab=99.77  E-value=5.9e-18  Score=135.24  Aligned_cols=138  Identities=11%  Similarity=0.120  Sum_probs=104.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      |+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|+.|++++.++++       ++|+
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~id~   80 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDVRDYSQLTALAQACEEKWGGIDV   80 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            479999999999999999999999999999987643111     1123568889999999988877665       5899


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          +...+++|+.++.++.+.    +++.+.+++|++||.....+......|+.+|.+.+.+.
T Consensus        81 lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sKaa~~~~~  160 (270)
T PRK05650         81 IVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSGRIVNIASMAGLMQGPAMSSYNVAKAGVVALS  160 (270)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEECChhhcCCCCCchHHHHHHHHHHHHH
Confidence            9999996431          123567888888876655    45666789999999432234455678999999988877


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       161 ~~l~  164 (270)
T PRK05650        161 ETLL  164 (270)
T ss_pred             HHHH
Confidence            7653

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=99.77  E-value=7.5e-18  Score=134.26  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=108.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       .
T Consensus         8 ~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   87 (265)
T PRK07097          8 LKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAMVSQIEKEVGV   87 (265)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            366899999999999999999999999999999887643211     1113468899999999998888775       3


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||....          +...+++|+.++..+.+++.    +.+.++||++||.....+......|+.+|.+.+
T Consensus        88 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaal~  167 (265)
T PRK07097         88 IDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHGKIINICSMMSELGRETVSAYAAAKGGLK  167 (265)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCcEEEEEcCccccCCCCCCccHHHHHHHHH
Confidence            8999999996431          23456789999887766653    445679999999432233455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       168 ~l~~~la  174 (265)
T PRK07097        168 MLTKNIA  174 (265)
T ss_pred             HHHHHHH
Confidence            9988864

>PRK12743 oxidoreductase; Provisional

Probab=99.77  E-value=4.7e-18  Score=134.78  Aligned_cols=139  Identities=12%  Similarity=0.123  Sum_probs=106.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +++++||||+|+||.+++++|+++|++|+++.+++.....      .....++.++.+|++|+++++++++       .+
T Consensus         2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (256)
T PRK12743          2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQALDKLIQRLGRI   81 (256)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence            5799999999999999999999999999888765433111      1123578899999999988777665       47


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |++|||+|....          +...+.+|+.++..+++++...    + .+++|++||.....+..+...|+.+|.+.+
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~  161 (256)
T PRK12743         82 DVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEHTPLPGASAYTAAKHALG  161 (256)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeeccccCCCCCcchhHHHHHHHH
Confidence            999999996431          2346789999999998877542    2 358999999433334455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.++
T Consensus       162 ~l~~~la  168 (256)
T PRK12743        162 GLTKAMA  168 (256)
T ss_pred             HHHHHHH
Confidence            9888754

>PRK12829 short chain dehydrogenase; Provisional

Probab=99.77  E-value=6.2e-18  Score=134.25  Aligned_cols=141  Identities=16%  Similarity=0.116  Sum_probs=105.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......   .....++.++.+|+.|++++.++++       ++|
T Consensus         9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   88 (264)
T PRK12829          9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGAKVTATVADVADPAQVERVFDTAVERFGGLD   88 (264)
T ss_pred             cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            466899999999999999999999999999999997543211   1111256889999999998877664       689


Q ss_pred             EeEEccccCCC-----------CccchhhhHHHHHHHHHHHH----HcCC-CEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          124 AVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EKGV-KRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       124 ~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~~~-~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|||++|....           +...+++|+.++.++++++.    ..+. ++++++||.....+......|+.+|.+.|
T Consensus        89 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~~~~~~~~~~~y~~~K~a~~  168 (264)
T PRK12829         89 VLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVAGRLGYPGRTPYAASKWAVV  168 (264)
T ss_pred             EEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccccccCCCCCchhHHHHHHHH
Confidence            99999997521           23567889999998888763    3444 56888777322222334567999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.++
T Consensus       169 ~~~~~l~  175 (264)
T PRK12829        169 GLVKSLA  175 (264)
T ss_pred             HHHHHHH
Confidence            9888764

>PRK12828 short chain dehydrogenase; Provisional

Probab=99.77  E-value=7.1e-18  Score=131.75  Aligned_cols=140  Identities=22%  Similarity=0.236  Sum_probs=107.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc---cccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---RDSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++++++||||+|+||++++++|+++|++|++++|++.+..   ......+.+++.+|+.|.+++.++++       ++|
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLVDPQAARRAVDEVNRQFGRLD   84 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecCCHHHHHHHHHHHHHHhCCcC
Confidence            35689999999999999999999999999999999764421   11122457888999999998877766       589


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEecc-ccCcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAA-DFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|||++|....          +...+++|+.++.++++++.    +.+.+++|++||. .++ +......|+.+|.+.+.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~-~~~~~~~y~~sk~a~~~  163 (239)
T PRK12828         85 ALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGGRIVNIGAGAALK-AGPGMGAYAAAKAGVAR  163 (239)
T ss_pred             EEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCCEEEEECchHhcc-CCCCcchhHHHHHHHHH
Confidence            99999985421          12346788999988887764    4567899999993 333 23445689999999988


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.++
T Consensus       164 ~~~~~a  169 (239)
T PRK12828        164 LTEALA  169 (239)
T ss_pred             HHHHHH
Confidence            887653

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=99.77  E-value=7e-18  Score=133.67  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=108.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|.+++.++++       +
T Consensus         9 l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~~~   88 (255)
T PRK06113          9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFALSKLGK   88 (255)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999887543111     1113467889999999998877654       4


Q ss_pred             ccEeEEccccCCC---------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          122 VTAVISCVGGFGS---------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       122 ~d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|++|||||....         +...+++|+.++.++++++.    +.+.+++|++||.....+..+...|+.+|.+.+.
T Consensus        89 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~  168 (255)
T PRK06113         89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASH  168 (255)
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCcEEEEEecccccCCCCCcchhHHHHHHHHH
Confidence            7999999996431         12347899999999988875    3444699999994333344556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       169 ~~~~la  174 (255)
T PRK06113        169 LVRNMA  174 (255)
T ss_pred             HHHHHH
Confidence            998764

>PRK08219 short chain dehydrogenase; Provisional

Probab=99.77  E-value=4.9e-18  Score=131.86  Aligned_cols=137  Identities=16%  Similarity=0.082  Sum_probs=102.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc---CccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~~  131 (202)
                      +|+++||||+|+||++++++|+++ ++|++++|+..+... .....+++++.+|+.|++++.++++   ++|+|||++|.
T Consensus         3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~   81 (227)
T PRK08219          3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNAGV   81 (227)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECCCc
Confidence            579999999999999999999999 999999998543211 1112367899999999999998887   58999999996


Q ss_pred             CCC----------CccchhhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          132 FGS----------NSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       132 ~~~----------~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ...          +...+++|+.+..++.+    .+++. .+++|++||.....+..+..+|+.+|.+.|.+++.+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~-~~~~v~~ss~~~~~~~~~~~~y~~~K~a~~~~~~~~~  157 (227)
T PRK08219         82 ADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAA-HGHVVFINSGAGLRANPGWGSYAASKFALRALADALR  157 (227)
T ss_pred             CCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhC-CCeEEEEcchHhcCcCCCCchHHHHHHHHHHHHHHHH
Confidence            431          12346777787554444    44444 4699999983222233446789999999998888764

>PRK12824 acetoacetyl-CoA reductase; Provisional

Probab=99.77  E-value=7.9e-18  Score=132.14  Aligned_cols=139  Identities=20%  Similarity=0.201  Sum_probs=105.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +++++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|+.|++++.++++       ++
T Consensus         2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~i   81 (245)
T PRK12824          2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELDVTDTEECAEALAEIEEEEGPV   81 (245)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            3689999999999999999999999999999988532111      0112468899999999998877765       48


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||+|....          +...+++|+.++.++.++    +++.+.++||++||.....+......|+.+|.+.+.
T Consensus        82 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~Y~~sK~a~~~  161 (245)
T PRK12824         82 DILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYGRIINISSVNGLKGQFGQTNYSAAKAGMIG  161 (245)
T ss_pred             CEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCeEEEEECChhhccCCCCChHHHHHHHHHHH
Confidence            999999986421          234567899998887554    455667799999993222334456789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       162 ~~~~l~  167 (245)
T PRK12824        162 FTKALA  167 (245)
T ss_pred             HHHHHH
Confidence            888764

>PRK07577 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.3e-17  Score=128.78  Aligned_cols=132  Identities=20%  Similarity=0.172  Sum_probs=103.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc------CccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~vi~~  128 (202)
                      .+++++||||+|+||++++++|+++|++|+++.|+....      ...+++.+|+.|++++.++++      ++|++|||
T Consensus         2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~vi~~   75 (234)
T PRK07577          2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD------FPGELFACDLADIEQTAATLAQINEIHPVDAIVNN   75 (234)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc------cCceEEEeeCCCHHHHHHHHHHHHHhCCCcEEEEC
Confidence            357899999999999999999999999999999986542      123578999999998887776      58999999


Q ss_pred             cccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          129 VGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       129 a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      +|....          +...+++|+.++.++.+++    ++.+.+++|++||. .++  .....+|+.+|.+.|.+++.+
T Consensus        76 ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~--~~~~~~Y~~sK~a~~~~~~~~  153 (234)
T PRK07577         76 VGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQGRIVNICSRAIFG--ALDRTSYSAAKSALVGCTRTW  153 (234)
T ss_pred             CCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEccccccC--CCCchHHHHHHHHHHHHHHHH
Confidence            996432          1245778888888776654    45567799999993 333  334578999999999988875


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      .
T Consensus       154 a  154 (234)
T PRK07577        154 A  154 (234)
T ss_pred             H
Confidence            3

>PRK07985 oxidoreductase; Provisional

Probab=99.77  E-value=1.1e-17  Score=135.54  Aligned_cols=140  Identities=15%  Similarity=0.090  Sum_probs=106.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-c------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-R------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|+++.|+..... .      .....++.++.+|+.|++++.++++      
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  126 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSLVHEAHKAL  126 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999999999998876543211 0      1113457789999999988776654      


Q ss_pred             -CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEecc-ccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAA-DFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...           ++...+++|+.++..+++++...  ..++||++||. .+. +......|+.+|.+
T Consensus       127 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~-~~~~~~~Y~asKaa  205 (294)
T PRK07985        127 GGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ-PSPHLLDYAATKAA  205 (294)
T ss_pred             CCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc-CCCCcchhHHHHHH
Confidence             4799999998531           12457889999999999888642  22589999993 332 33445689999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.++
T Consensus       206 l~~l~~~la  214 (294)
T PRK07985        206 ILNYSRGLA  214 (294)
T ss_pred             HHHHHHHHH
Confidence            999988764

>PRK06181 short chain dehydrogenase; Provisional

Probab=99.77  E-value=1.3e-17  Score=132.49  Aligned_cols=139  Identities=10%  Similarity=0.104  Sum_probs=106.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      +++++||||+|+||.+++++|+++|++|++++|+......     .....++.++.+|+.|++++.++++       ++|
T Consensus         1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   80 (263)
T PRK06181          1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTDVSDAEACERLIEAAVARFGGID   80 (263)
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            4689999999999999999999999999999997543110     1123468889999999998887765       589


Q ss_pred             EeEEccccCCCC-----------ccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFGSN-----------SYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~~~-----------~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +||||+|.....           ...+++|+.++.++++.+..   .+.+++|++||.....+..+...|+.+|.+.|.+
T Consensus        81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~~  160 (263)
T PRK06181         81 ILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRGQIVVVSSLAGLTGVPTRSGYAASKHALHGF  160 (263)
T ss_pred             EEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCEEEEEecccccCCCCCccHHHHHHHHHHHH
Confidence            999999864311           23478899999999888753   2346899999932222344567899999999998


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.+.
T Consensus       161 ~~~l~  165 (263)
T PRK06181        161 FDSLR  165 (263)
T ss_pred             HHHHH
Confidence            87653

>PRK06701 short chain dehydrogenase; Provisional

Probab=99.77  E-value=2.6e-17  Score=133.14  Aligned_cols=141  Identities=12%  Similarity=0.109  Sum_probs=108.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++++++||||+|+||.+++++|+++|++|+++.|+......      .....++.++.+|+.|.+++.++++      
T Consensus        43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~  122 (290)
T PRK06701         43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVREL  122 (290)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3457899999999999999999999999999999887533111      1112467899999999998887765      


Q ss_pred             -CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEec-cccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK--GVKRFVYISA-ADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||....           +...+++|+.++.++++++.+.  ..+++|++|| ..+. +......|+.+|.+
T Consensus       123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~~~-~~~~~~~Y~~sK~a  201 (290)
T PRK06701        123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITGYE-GNETLIDYSATKGA  201 (290)
T ss_pred             CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccccC-CCCCcchhHHHHHH
Confidence             47999999996421           1346789999999999988652  2358999999 3333 33345789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.+.
T Consensus       202 ~~~l~~~la  210 (290)
T PRK06701        202 IHAFTRSLA  210 (290)
T ss_pred             HHHHHHHHH
Confidence            999988865

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=99.77  E-value=3.6e-18  Score=126.70  Aligned_cols=138  Identities=17%  Similarity=0.224  Sum_probs=109.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecC--CCCc--c---cccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRS--GRSS--L---RDSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~--~~~~--~---~~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      |+++||||+++||++++++|+++|. .|+++.|+  .+..  .   ......++.++++|+.++++++++++       .
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999999999999955 77888887  1111  0   01124688999999999998887765       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      +|++|||+|....          +...+++|+.++..+.+++...+.+++|++||.....+.+....|+.+|++.+.+++
T Consensus        81 ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~askaal~~~~~  160 (167)
T PF00106_consen   81 LDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGGKIVNISSIAGVRGSPGMSAYSASKAALRGLTQ  160 (167)
T ss_dssp             ESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTEEEEEEEEGGGTSSSTTBHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhhhccccccceeeeeeehheeccccceEEecchhhccCCCCChhHHHHHHHHHHHHH
Confidence            7999999997542          235778999999999999877666799999995444455566789999999999998


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       161 ~la  163 (167)
T PF00106_consen  161 SLA  163 (167)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07109 short chain dehydrogenase; Provisional

Probab=99.77  E-value=9.4e-18  Score=138.25  Aligned_cols=139  Identities=11%  Similarity=0.097  Sum_probs=105.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       +
T Consensus         6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g~   85 (334)
T PRK07109          6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELGP   85 (334)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCCC
Confidence            456899999999999999999999999999999997543111     1123468889999999998887764       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHH----HHHHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINA----IRAASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~----~~~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||....          +...+++|+.++.++    ++.+++.+.++||++|| ..+. +.+....|+.+|.+.
T Consensus        86 iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~isS~~~~~-~~~~~~~Y~asK~a~  164 (334)
T PRK07109         86 IDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVGSALAYR-SIPLQSAYCAAKHAI  164 (334)
T ss_pred             CCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeCChhhcc-CCCcchHHHHHHHHH
Confidence            8999999995321          134567887777654    44455556679999999 3333 334457899999999


Q ss_pred             HHHHHHh
Q 028890          187 SDVAACQ  193 (202)
Q Consensus       187 E~~~~~~  193 (202)
                      +.+.+.+
T Consensus       165 ~~~~~~l  171 (334)
T PRK07109        165 RGFTDSL  171 (334)
T ss_pred             HHHHHHH
Confidence            9887765

>PRK08226 short chain dehydrogenase; Provisional

Probab=99.77  E-value=8.7e-18  Score=133.56  Aligned_cols=140  Identities=16%  Similarity=0.093  Sum_probs=106.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--c--ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--R--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+.....  .  .....++.++.+|+.++++++++++       ++|
T Consensus         5 ~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~id   84 (263)
T PRK08226          5 TGKTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAAIKRAKEKEGRID   84 (263)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            5689999999999999999999999999999998753210  0  1113467889999999998887765       579


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEecccc-CcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADF-GVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~-~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|||||....          +...+++|+.++..+++++..    .+.+++|++||... ..+......|+.+|.+.|.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~  164 (263)
T PRK08226         85 ILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVG  164 (263)
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEECcHHhcccCCCCcchHHHHHHHHHH
Confidence            99999996321          123578899999988887643    34569999998322 2233446789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.++
T Consensus       165 ~~~~la  170 (263)
T PRK08226        165 LTKSLA  170 (263)
T ss_pred             HHHHHH
Confidence            988764

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=99.76  E-value=1.1e-17  Score=131.36  Aligned_cols=139  Identities=19%  Similarity=0.148  Sum_probs=104.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++++++||||+|+||+++++.|+++|+.|++..|+.++...  .....++.++.+|+.|.++++++++       ++|++
T Consensus         5 ~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   84 (245)
T PRK12936          5 SGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDIL   84 (245)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56899999999999999999999999998888776543211  1123468899999999998887654       58999


Q ss_pred             EEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||...          .+...+++|+.++.++++++.    +.+.++||++||.....+......|+.+|.+.+.+++
T Consensus        85 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sk~a~~~~~~  164 (245)
T PRK12936         85 VNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYGRIINITSVVGVTGNPGQANYCASKAGMIGFSK  164 (245)
T ss_pred             EECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCEEEEECCHHhCcCCCCCcchHHHHHHHHHHHH
Confidence            99999642          123467889999988878764    2456799999993211223345689999998888877


Q ss_pred             Hh
Q 028890          192 CQ  193 (202)
Q Consensus       192 ~~  193 (202)
                      .+
T Consensus       165 ~l  166 (245)
T PRK12936        165 SL  166 (245)
T ss_pred             HH
Confidence            65

>PRK05884 short chain dehydrogenase; Provisional

Probab=99.76  E-value=4.7e-18  Score=132.41  Aligned_cols=134  Identities=12%  Similarity=0.027  Sum_probs=103.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc----CccEeEEccccC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGGF  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~vi~~a~~~  132 (202)
                      |+++||||+|+||+++++.|+++|++|++++|+.++........++.++++|+.|+++++++++    ++|++|||+|..
T Consensus         1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~~   80 (223)
T PRK05884          1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAPS   80 (223)
T ss_pred             CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCcc
Confidence            4799999999999999999999999999999875432111111246789999999999888775    589999999741


Q ss_pred             C---------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 G---------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~---------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .               .+...+++|+.++..+++++...  ..+++|++||..    ......|+.+|++.+.+.+.++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~----~~~~~~Y~asKaal~~~~~~la  155 (223)
T PRK05884         81 WDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN----PPAGSAEAAIKAALSNWTAGQA  155 (223)
T ss_pred             ccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC----CCCccccHHHHHHHHHHHHHHH
Confidence            0               12346789999999888887542  236999999842    2334689999999999988764

>PRK06172 short chain dehydrogenase; Provisional

Probab=99.76  E-value=9.6e-18  Score=132.61  Aligned_cols=141  Identities=11%  Similarity=0.037  Sum_probs=106.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|+.|++++.++++       +
T Consensus         5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~~~~~g~   84 (253)
T PRK06172          5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVTRDAEVKALVEQTIAAYGR   84 (253)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999998643111     1123468899999999998887765       4


Q ss_pred             ccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||+|....           +...+++|+.++..+++++    .+.+.+++|++||...-.+......|+.+|.+.
T Consensus        85 id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~  164 (253)
T PRK06172         85 LDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGGAIVNTASVAGLGAAPKMSIYAASKHAV  164 (253)
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECchhhccCCCCCchhHHHHHHH
Confidence            6999999996321           2345678999887766544    345557999999932222344567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.++
T Consensus       165 ~~~~~~la  172 (253)
T PRK06172        165 IGLTKSAA  172 (253)
T ss_pred             HHHHHHHH
Confidence            99888764

>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated

Probab=99.76  E-value=1e-17  Score=132.72  Aligned_cols=140  Identities=12%  Similarity=0.136  Sum_probs=106.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++++++||||+|+||.+++++|++.|++|+++++.......   .....++.++++|+.|+++++++++       ++|
T Consensus         8 l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~~D   87 (253)
T PRK08993          8 LEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPTETIEQVTALGRRFLSLTADLRKIDGIPALLERAVAEFGHID   87 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            457899999999999999999999999999988775432111   1113467889999999998888776       489


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEec-cccCcCCcCCcchHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISA-ADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|||||...          ++...+++|+.++.++++++..    .+ .+++|++|| ..+. +......|+.+|.+.+
T Consensus        88 ~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~-~~~~~~~Y~~sKaa~~  166 (253)
T PRK08993         88 ILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQ-GGIRVPSYTASKSGVM  166 (253)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchhhcc-CCCCCcchHHHHHHHH
Confidence            9999999642          2345788999999988887643    22 258999999 3333 3334568999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       167 ~~~~~la  173 (253)
T PRK08993        167 GVTRLMA  173 (253)
T ss_pred             HHHHHHH
Confidence            9888763

>PRK12938 acetyacetyl-CoA reductase; Provisional

Probab=99.76  E-value=1e-17  Score=131.86  Aligned_cols=140  Identities=20%  Similarity=0.230  Sum_probs=103.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+|+||++++++|+++|++|+++.+.......      .....++..+.+|+.|.+++.++++       +
T Consensus         2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   81 (246)
T PRK12938          2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFDKVKAEVGE   81 (246)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence            45789999999999999999999999999886543221110      1112357788999999988877665       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||....          +...+++|+.++..+.+++    .+.+.+++|++||.....+......|+.+|.+.+
T Consensus        82 id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~y~~sK~a~~  161 (246)
T PRK12938         82 IDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAGIH  161 (246)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEechhccCCCCCChhHHHHHHHHH
Confidence            8999999996431          2346788999977765554    4556679999999433334455678999999998


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.+.
T Consensus       162 ~~~~~l~  168 (246)
T PRK12938        162 GFTMSLA  168 (246)
T ss_pred             HHHHHHH
Confidence            8877653

>PRK06924 short chain dehydrogenase; Provisional

Probab=99.76  E-value=7.5e-18  Score=132.99  Aligned_cols=139  Identities=17%  Similarity=0.200  Sum_probs=103.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhcCc----------
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGV----------  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~----------  122 (202)
                      ||+++||||+|+||++++++|+++|++|++++|++.+...   .....+++++.+|++|+++++++++.+          
T Consensus         1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~   80 (251)
T PRK06924          1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQYNSNLTFHSLDLQDVHELETNFNEILSSIQEDNVS   80 (251)
T ss_pred             CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhccCCceEEEEecCCCHHHHHHHHHHHHHhcCcccCC
Confidence            4689999999999999999999999999999997632111   112357889999999999888777532          


Q ss_pred             -cEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHc-CCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          123 -TAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEK-GVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       123 -d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~-~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       +++|||+|....           +...+++|+.++..+++.+    ++. +.++||++||.....+..+...|+.+|.+
T Consensus        81 ~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sKaa  160 (251)
T PRK06924         81 SIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISSGAAKNPYFGWSAYCSSKAG  160 (251)
T ss_pred             ceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecchhhcCCCCCcHHHhHHHHH
Confidence             278999986421           1235677888876665554    332 34689999994333444556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.++
T Consensus       161 ~~~~~~~la  169 (251)
T PRK06924        161 LDMFTQTVA  169 (251)
T ss_pred             HHHHHHHHH
Confidence            999998764

>PRK12744 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.5e-17  Score=131.98  Aligned_cols=140  Identities=16%  Similarity=0.238  Sum_probs=103.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ++++++||||+|+||.++++.|+++|++|+++.++......         .....++.++++|+.|++++.++++     
T Consensus         7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   86 (257)
T PRK12744          7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFDDAKAA   86 (257)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHHHHHHh
Confidence            56899999999999999999999999998777765322110         0113468889999999999887765     


Q ss_pred             --CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 --~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                        ++|++|||||...          .+...+++|+.++..+++++.+.  ..+++++++|+..+........|+.+|++.
T Consensus        87 ~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~~~~~~~Y~~sK~a~  166 (257)
T PRK12744         87 FGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAFTPFYSAYAGSKAPV  166 (257)
T ss_pred             hCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhcccCCCcccchhhHHHH
Confidence              5899999999632          12346788999999988888653  124677764432223344567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+++.++
T Consensus       167 ~~~~~~la  174 (257)
T PRK12744        167 EHFTRAAS  174 (257)
T ss_pred             HHHHHHHH
Confidence            99999874

>PRK07326 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.2e-17  Score=130.76  Aligned_cols=139  Identities=19%  Similarity=0.144  Sum_probs=106.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc-CCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ++++++||||+|+||++++++|+++|++|++++|++.+...   .. ...++.++.+|+.|++++.++++       ++|
T Consensus         5 ~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d   84 (237)
T PRK07326          5 KGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVDAIVAAFGGLD   84 (237)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            45799999999999999999999999999999997643111   00 01568899999999998877665       689


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||++|....          ....+++|+.++..+++++.+   .+.+++|++||.....+......|+.+|++.+.+.
T Consensus        85 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~y~~sk~a~~~~~  164 (237)
T PRK07326         85 VLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGGYIINISSLAGTNFFAGGAAYNASKFGLVGFS  164 (237)
T ss_pred             EEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCeEEEEECChhhccCCCCCchHHHHHHHHHHHH
Confidence            99999986431          124578899999988887754   34568999998322223344567999999999888


Q ss_pred             HHh
Q 028890          191 ACQ  193 (202)
Q Consensus       191 ~~~  193 (202)
                      +.+
T Consensus       165 ~~~  167 (237)
T PRK07326        165 EAA  167 (237)
T ss_pred             HHH
Confidence            875

>PRK08177 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.2e-17  Score=130.09  Aligned_cols=139  Identities=15%  Similarity=0.140  Sum_probs=104.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-----CccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d~vi~~a~  130 (202)
                      +++++||||+|++|++++++|+++|++|++++|++..........++.++.+|+.|+++++++++     ++|+||||+|
T Consensus         1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag   80 (225)
T PRK08177          1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAG   80 (225)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCc
Confidence            46899999999999999999999999999999986543211112467888999999988877666     4899999998


Q ss_pred             cCCC------------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEecccc--Cc-CCcCCcchHHHHHHHHHHHHH
Q 028890          131 GFGS------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADF--GV-ANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       131 ~~~~------------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~--~~-~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ....            +...+.+|+.++..+.+++...   +..+++++||...  +. +......|+.+|.+.+.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~ss~~g~~~~~~~~~~~~Y~~sK~a~~~~~~~  160 (225)
T PRK08177         81 ISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQGVLAFMSSQLGSVELPDGGEMPLYKASKAALNSMTRS  160 (225)
T ss_pred             ccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCCEEEEEccCccccccCCCCCccchHHHHHHHHHHHHH
Confidence            6421            1235678889998888877532   3357888887321  11 122445799999999999987


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       161 l~  162 (225)
T PRK08177        161 FV  162 (225)
T ss_pred             HH
Confidence            64

>PRK05865 hypothetical protein; Provisional

Probab=99.76  E-value=1.3e-17  Score=150.02  Aligned_cols=116  Identities=22%  Similarity=0.358  Sum_probs=100.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~  136 (202)
                      |+|+||||+||||++++++|+++|++|++++|+....    ...+++++.+|+.|.+++.++++++|+|||||+....  
T Consensus         1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~----~~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa~~~~--   74 (854)
T PRK05865          1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS----WPSSADFIAADIRDATAVESAMTGADVVAHCAWVRGR--   74 (854)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh----cccCceEEEeeCCCHHHHHHHHhCCCEEEECCCcccc--
Confidence            5899999999999999999999999999999875332    1246889999999999999999999999999986432  


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          137 YMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       137 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                       .+++|+.++.+++++|++.++++|||+||..              |..+|++++.+
T Consensus        75 -~~~vNv~GT~nLLeAa~~~gvkr~V~iSS~~--------------K~aaE~ll~~~  116 (854)
T PRK05865         75 -NDHINIDGTANVLKAMAETGTGRIVFTSSGH--------------QPRVEQMLADC  116 (854)
T ss_pred             -hHHHHHHHHHHHHHHHHHcCCCeEEEECCcH--------------HHHHHHHHHHc
Confidence             5789999999999999999999999999841              88888888764

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.76  E-value=2.4e-17  Score=128.87  Aligned_cols=137  Identities=16%  Similarity=0.134  Sum_probs=104.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH-hhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-DSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .++++++||||+|+||+++++.|+++|++|++++|+.....    ..++.++.+|+.++ +.+.+.+.++|++|||||..
T Consensus         3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~~id~lv~~ag~~   78 (235)
T PRK06550          3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPDL----SGNFHFLQLDLSDDLEPLFDWVPSVDILCNTAGIL   78 (235)
T ss_pred             CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCccccc----CCcEEEEECChHHHHHHHHHhhCCCCEEEECCCCC
Confidence            45689999999999999999999999999999998754321    34688999999987 55555556799999999953


Q ss_pred             C-----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 G-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~-----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .           ++...+++|+.++.++++++.    +.+.++||++||.....+......|+.+|.+.+.+.+.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la  155 (235)
T PRK06550         79 DDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSGIIINMCSIASFVAGGGGAAYTASKHALAGFTKQLA  155 (235)
T ss_pred             CCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcccHHHHHHHHHHHHHHH
Confidence            2           123457889999998888774    3445689999993222233445789999999998877653

>PRK07576 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1e-17  Score=133.51  Aligned_cols=140  Identities=16%  Similarity=0.079  Sum_probs=106.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+.+....     .....++.++.+|++|++++.++++       +
T Consensus         7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~   86 (264)
T PRK07576          7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGP   86 (264)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999987543111     1112466889999999998887765       4


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|++|||||...          .+...+++|+.++.++++++...   ..++|+++||.....+......|+.+|.+.+.
T Consensus        87 iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~~~~~~~~~Y~asK~a~~~  166 (264)
T PRK07576         87 IDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAFVPMPMQAHVCAAKAGVDM  166 (264)
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhccCCCCccHHHHHHHHHHH
Confidence            799999998432          12345679999999988877542   22699999993222334456789999999999


Q ss_pred             HHHHh
Q 028890          189 VAACQ  193 (202)
Q Consensus       189 ~~~~~  193 (202)
                      +++.+
T Consensus       167 l~~~l  171 (264)
T PRK07576        167 LTRTL  171 (264)
T ss_pred             HHHHH
Confidence            98875

>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.76  E-value=1.8e-17  Score=130.72  Aligned_cols=140  Identities=11%  Similarity=0.016  Sum_probs=105.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc------cCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~------~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+|+||++++++|+++|++|+++.|+.......      ....++.++.+|+++++++.++++       +
T Consensus         5 ~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   84 (252)
T PRK06077          5 KDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLADVSTREGCETLAKATIDRYGV   84 (252)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHHHHHHHHHHHcCC
Confidence            468999999999999999999999999998877654321111      112356788999999988777655       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|+||||||....          +...+++|+.++.++++++.+.  ..++||++||...-.+..+...|+.+|.+.|.+
T Consensus        85 ~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~~  164 (252)
T PRK06077         85 ADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIRPAYGLSIYGAMKAAVINL  164 (252)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccCCCCCchHHHHHHHHHHHH
Confidence            7999999995221          1245688999999888887653  235899999932223445567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       165 ~~~l~  169 (252)
T PRK06077        165 TKYLA  169 (252)
T ss_pred             HHHHH
Confidence            98764

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=99.76  E-value=1.2e-17  Score=132.27  Aligned_cols=141  Identities=16%  Similarity=0.086  Sum_probs=108.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|+.|++++.++++       +
T Consensus         9 ~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~   88 (256)
T PRK06124          9 LAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAAFARIDAEHGR   88 (256)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence            468899999999999999999999999999999997543111     1123468899999999998877665       4


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||+|....          +...+++|+.++..+.+++.    +.+.+++|++||.....+......|+.+|.+.+
T Consensus        89 id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~a~~  168 (256)
T PRK06124         89 LDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYGRIIAITSIAGQVARAGDAVYPAAKQGLT  168 (256)
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEeechhccCCCCccHhHHHHHHHH
Confidence            6999999996431          23457889999998886654    356679999999432223344578999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       169 ~~~~~la  175 (256)
T PRK06124        169 GLMRALA  175 (256)
T ss_pred             HHHHHHH
Confidence            9888753

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.76  E-value=9e-18  Score=133.53  Aligned_cols=141  Identities=18%  Similarity=0.142  Sum_probs=102.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+++||++++++|+++|++|+++.|+......       .....++.++.+|++|+++++++++      
T Consensus         6 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (260)
T PRK08416          6 MKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKKIDEDF   85 (260)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            467899999999999999999999999999888765432111       1113468899999999998877665      


Q ss_pred             -CccEeEEccccCC--------C--------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcch
Q 028890          121 -GVTAVISCVGGFG--------S--------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGY  179 (202)
Q Consensus       121 -~~d~vi~~a~~~~--------~--------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y  179 (202)
                       ++|++|||||...        +        +...+++|+.+...+.+.+    ++.+.++||++||...-.+.+....|
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  165 (260)
T PRK08416         86 DRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGGSIISLSSTGNLVYIENYAGH  165 (260)
T ss_pred             CCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCEEEEEEeccccccCCCCcccc
Confidence             4799999998531        0        1234566777766554444    44445699999994222233445689


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|++.+.+++.++
T Consensus       166 ~asK~a~~~~~~~la  180 (260)
T PRK08416        166 GTSKAAVETMVKYAA  180 (260)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999999999988764

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=99.76  E-value=1e-17  Score=132.07  Aligned_cols=142  Identities=15%  Similarity=0.123  Sum_probs=104.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCCceeEEEccCC--CHhhHHHHh-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLL--SSDSWKEAL-----  119 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~~~~~~~~D~~--~~~~~~~~~-----  119 (202)
                      ..++++++||||+|+||.+++++|+++|++|++++|+..+..      ......++.++.+|+.  +++++.+++     
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIEE   88 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHHH
Confidence            347789999999999999999999999999999999864311      1111235678888886  555544433     


Q ss_pred             --cCccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHH
Q 028890          120 --DGVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       120 --~~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                        .++|+||||||....           +...+++|+.++.++++++    ++.+.++|+++||.....+......|+.+
T Consensus        89 ~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~~iv~~ss~~~~~~~~~~~~Y~~s  168 (247)
T PRK08945         89 QFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAASLVFTSSSVGRQGRANWGAYAVS  168 (247)
T ss_pred             HhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCCEEEEEccHhhcCCCCCCcccHHH
Confidence              368999999986321           2346789999988887776    44567899999994322233456789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+++.+.
T Consensus       169 K~a~~~~~~~~~  180 (247)
T PRK08945        169 KFATEGMMQVLA  180 (247)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>PRK07677 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.2e-17  Score=132.04  Aligned_cols=138  Identities=13%  Similarity=0.124  Sum_probs=105.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      +|+++||||+|+||+++++.|+++|++|++++|+......     .....++.++.+|++|++++.++++       ++|
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVRNPEDVQKMVEQIDEKFGRID   80 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCcc
Confidence            4789999999999999999999999999999988643111     1113578899999999998877664       579


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|||+|...          .+...+++|+.++.++++++.+    .+ .+++|++||.....+......|+.+|.+.+.
T Consensus        81 ~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sKaa~~~  160 (252)
T PRK07677         81 ALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGVLA  160 (252)
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCCCCcchHHHHHHHHH
Confidence            9999998532          1244688999999999888843    22 3589999984222233455689999999998


Q ss_pred             HHHHh
Q 028890          189 VAACQ  193 (202)
Q Consensus       189 ~~~~~  193 (202)
                      +.+.+
T Consensus       161 ~~~~l  165 (252)
T PRK07677        161 MTRTL  165 (252)
T ss_pred             HHHHH
Confidence            88864

>PRK05872 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.7e-17  Score=134.43  Aligned_cols=141  Identities=14%  Similarity=0.123  Sum_probs=106.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc-CCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||.++++.|.++|++|++++|+......   .. ....+..+.+|++|++++.++++       .+
T Consensus         7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i   86 (296)
T PRK05872          7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGI   86 (296)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            467899999999999999999999999999999997643111   11 12345667799999998877664       58


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      |++|||||....          +...+++|+.++.++++++...   +.++||++||.....+......|+.+|.+.+.+
T Consensus        87 d~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~~  166 (296)
T PRK05872         87 DVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRGYVLQVSSLAAFAAAPGMAAYCASKAGVEAF  166 (296)
T ss_pred             CEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCEEEEEeCHhhcCCCCCchHHHHHHHHHHHH
Confidence            999999996421          2356789999999988887432   236899999932222334457899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.+.
T Consensus       167 ~~~l~  171 (296)
T PRK05872        167 ANALR  171 (296)
T ss_pred             HHHHH
Confidence            88753

>PRK06139 short chain dehydrogenase; Provisional

Probab=99.76  E-value=1.8e-17  Score=136.34  Aligned_cols=140  Identities=13%  Similarity=0.107  Sum_probs=105.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            456899999999999999999999999999999997643211     1123467788999999998888764       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||....          +...+++|+.++.++.+++    ++.+.+++|++||...-.+.+....|+.+|.+.+
T Consensus        85 iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g~iV~isS~~~~~~~p~~~~Y~asKaal~  164 (330)
T PRK06139         85 IDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHGIFINMISLGGFAAQPYAAAYSASKFGLR  164 (330)
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhcCCCCCchhHHHHHHHHH
Confidence            8999999995321          1346789999998876665    4455579999998322223344578999999888


Q ss_pred             HHHHHh
Q 028890          188 DVAACQ  193 (202)
Q Consensus       188 ~~~~~~  193 (202)
                      .+.+.+
T Consensus       165 ~~~~sL  170 (330)
T PRK06139        165 GFSEAL  170 (330)
T ss_pred             HHHHHH
Confidence            777764

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.75  E-value=1.7e-17  Score=135.17  Aligned_cols=142  Identities=14%  Similarity=0.056  Sum_probs=106.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++.++.......      .....++.++.+|+.|++++.++++      
T Consensus         9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~~~~~~~~~g   88 (306)
T PRK07792          9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADELVATAVGLG   88 (306)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            3467899999999999999999999999999998875432111      1113468899999999988877665      


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----c-------CCCEEEEEeccccCcCCcCCcch
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----K-------GVKRFVYISAADFGVANYLLQGY  179 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~-------~~~~~v~~SS~~~~~~~~~~~~Y  179 (202)
                      ++|++|||||....          +...+++|+.++.++++++..    .       ..+++|++||...-.+......|
T Consensus        89 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  168 (306)
T PRK07792         89 GLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVNTSSEAGLVGPVGQANY  168 (306)
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEEECCcccccCCCCCchH
Confidence            58999999996432          234678999999998887642    1       12589999983222233445689


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.+.+++.++
T Consensus       169 ~asKaal~~l~~~la  183 (306)
T PRK07792        169 GAAKAGITALTLSAA  183 (306)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988754

>PRK07062 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.9e-17  Score=131.84  Aligned_cols=140  Identities=13%  Similarity=0.093  Sum_probs=104.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccC-CCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSW-ANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~-~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.++...      ... ..++.++.+|++|++++.++++      
T Consensus         6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   85 (265)
T PRK07062          6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF   85 (265)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence            467899999999999999999999999999999998643111      111 2367889999999998877654      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...          .+...+++|+.+...+.+.+    ++.+.+++|++||...-.+......|+.+|.+
T Consensus        86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~asKaa  165 (265)
T PRK07062         86 GGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAASIVCVNSLLALQPEPHMVATSAARAG  165 (265)
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCcEEEEeccccccCCCCCchHhHHHHHH
Confidence             4799999999642          12345677888777665554    44555799999994222233445689999999


Q ss_pred             HHHHHHHh
Q 028890          186 SSDVAACQ  193 (202)
Q Consensus       186 ~E~~~~~~  193 (202)
                      .+.+.+.+
T Consensus       166 l~~~~~~l  173 (265)
T PRK07062        166 LLNLVKSL  173 (265)
T ss_pred             HHHHHHHH
Confidence            99888765

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.75  E-value=2.4e-17  Score=129.49  Aligned_cols=141  Identities=13%  Similarity=0.059  Sum_probs=106.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||.+++++|+++|++|+++ .|+......     .....++.++.+|+.|++++.++++       
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVENLVEQIVEKFG   82 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            356799999999999999999999999999998 876543111     1123468899999999998887775       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|+|||++|....          +...+++|+.++.++++++..    .+.+++|++||...-........|+.+|.+.
T Consensus        83 ~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~~~~~~~~y~~sK~a~  162 (247)
T PRK05565         83 KIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSGVIVNISSIWGLIGASCEVLYSASKGAV  162 (247)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEECCHhhccCCCCccHHHHHHHHH
Confidence            68999999996421          134678899998888777653    4567899999932212233456899999998


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       163 ~~~~~~~~  170 (247)
T PRK05565        163 NAFTKALA  170 (247)
T ss_pred             HHHHHHHH
Confidence            88877653

>PRK07074 short chain dehydrogenase; Provisional

Probab=99.75  E-value=1.9e-17  Score=131.25  Aligned_cols=138  Identities=18%  Similarity=0.148  Sum_probs=104.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc---cccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---RDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      +++++||||+|+||++++++|+++|++|++++|++....   ......++.++.+|+.|++++.++++       ++|++
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~v   81 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADALGDARFVPVACDLTDAASLAAALANAAAERGPVDVL   81 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            468999999999999999999999999999999764321   11123468899999999998887775       48999


Q ss_pred             EEccccCCCC----------ccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFGSN----------SYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~~~----------~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||+|.....          ...+.+|+.++.++++++    .+.+.++||++||.. +........|+.+|.+.+.+++
T Consensus        82 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~-~~~~~~~~~y~~sK~a~~~~~~  160 (257)
T PRK07074         82 VANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRGAVVNIGSVN-GMAALGHPAYSAAKAGLIHYTK  160 (257)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEEEcchh-hcCCCCCcccHHHHHHHHHHHH
Confidence            9999864311          123468889888888777    345567899999931 1122334689999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .+.
T Consensus       161 ~~a  163 (257)
T PRK07074        161 LLA  163 (257)
T ss_pred             HHH
Confidence            874

>PRK07069 short chain dehydrogenase; Validated

Probab=99.75  E-value=2.2e-17  Score=130.10  Aligned_cols=137  Identities=15%  Similarity=0.157  Sum_probs=101.3

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-------c-CCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-------S-WANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-------~-~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +++||||+|+||.++++.|+++|++|++++|+..+....       . ....+..+.+|+.|++++.++++       ++
T Consensus         1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   80 (251)
T PRK07069          1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAGLDAFAAEINAAHGEGVAFAAVQDVTDEAQWQALLAQAADAMGGL   80 (251)
T ss_pred             CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCCceEEEEEeecCCHHHHHHHHHHHHHHcCCc
Confidence            489999999999999999999999999999873221110       0 01234568899999998877664       57


Q ss_pred             cEeEEccccCCC----------CccchhhhHH----HHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGT----ANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~----~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||||....          ....+++|+.    ++..+++.+++.+.++||++||.....+......|+.+|.+.+.
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ii~~ss~~~~~~~~~~~~Y~~sK~a~~~  160 (251)
T PRK07069         81 SVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPASIVNISSVAAFKAEPDYTAYNASKAAVAS  160 (251)
T ss_pred             cEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEecChhhccCCCCCchhHHHHHHHHH
Confidence            999999996431          1335667877    55677777777777899999993222233455689999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.++
T Consensus       161 ~~~~la  166 (251)
T PRK07069        161 LTKSIA  166 (251)
T ss_pred             HHHHHH
Confidence            988764

>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.75  E-value=3.4e-17  Score=129.81  Aligned_cols=138  Identities=14%  Similarity=0.097  Sum_probs=104.5

Q ss_pred             CCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCc----------c------cccCCCceeEEEccCCCHhhHH
Q 028890           55 PSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSS----------L------RDSWANNVIWHQGNLLSSDSWK  116 (202)
Q Consensus        55 ~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~----------~------~~~~~~~~~~~~~D~~~~~~~~  116 (202)
                      ++++++||||+|  +||.+++++|+++|++|++++|++.+.          .      ......++.++.+|+++++++.
T Consensus         4 ~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~   83 (256)
T PRK12748          4 MKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEIDLSQPYAPN   83 (256)
T ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECCCCCHHHHH
Confidence            568999999995  899999999999999999999872210          0      0011346889999999998877


Q ss_pred             HHhc-------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc----CCCEEEEEecc-ccCcCCc
Q 028890          117 EALD-------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK----GVKRFVYISAA-DFGVANY  174 (202)
Q Consensus       117 ~~~~-------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~----~~~~~v~~SS~-~~~~~~~  174 (202)
                      ++++       .+|+||||||....          +...+++|+.++..+++++...    +.+++|++||. .+. +..
T Consensus        84 ~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~-~~~  162 (256)
T PRK12748         84 RVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGGRIINLTSGQSLG-PMP  162 (256)
T ss_pred             HHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCeEEEEECCccccC-CCC
Confidence            6664       47999999986421          1335789999999999887532    34699999993 333 333


Q ss_pred             CCcchHHHHHHHHHHHHHh
Q 028890          175 LLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ....|+.+|++.|.+++.+
T Consensus       163 ~~~~Y~~sK~a~~~~~~~l  181 (256)
T PRK12748        163 DELAYAATKGAIEAFTKSL  181 (256)
T ss_pred             CchHHHHHHHHHHHHHHHH
Confidence            5578999999999988875

>PRK06484 short chain dehydrogenase; Validated

Probab=99.74  E-value=2.7e-17  Score=142.83  Aligned_cols=142  Identities=12%  Similarity=0.142  Sum_probs=110.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ...+++++||||+|+||.+++++|+++|++|++++|+.....  ......++..+.+|++|++++.++++       .+|
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            346789999999999999999999999999999999754311  11123466788999999998887775       479


Q ss_pred             EeEEccccCC-----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          124 AVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       124 ~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      ++|||||...           .+...+++|+.++.++.+++...  +.++||++||.....+..+...|+.+|++.+.++
T Consensus       346 ~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaal~~l~  425 (520)
T PRK06484        346 VLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLGSIASLLALPPRNAYCASKAAVTMLS  425 (520)
T ss_pred             EEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEECchhhcCCCCCCchhHHHHHHHHHHH
Confidence            9999999642           12456789999999988887653  3369999999432333445678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       426 ~~la  429 (520)
T PRK06484        426 RSLA  429 (520)
T ss_pred             HHHH
Confidence            8764

>PRK06123 short chain dehydrogenase; Provisional

Probab=99.74  E-value=2.7e-17  Score=129.54  Aligned_cols=138  Identities=12%  Similarity=0.137  Sum_probs=101.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +++++||||+|+||.+++++|+++|++|+.+.++......      .....++.++.+|++|.+++.++++       .+
T Consensus         2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06123          2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFEAVDRELGRL   81 (248)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999999999999998877654322111      1113467889999999998888776       57


Q ss_pred             cEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHHc----C---CCEEEEEecc-c-cCcCCcCCcchHHH
Q 028890          123 TAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK----G---VKRFVYISAA-D-FGVANYLLQGYYEG  182 (202)
Q Consensus       123 d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~----~---~~~~v~~SS~-~-~~~~~~~~~~Y~~s  182 (202)
                      |++|||||....           +...+++|+.++.++++++.+.    .   .+++|++||. . ++. +.....|+.+
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~-~~~~~~Y~~s  160 (248)
T PRK06123         82 DALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMAARLGS-PGEYIDYAAS  160 (248)
T ss_pred             CEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchhhcCCC-CCCccchHHH
Confidence            999999996431           1245789999999888877542    1   2479999993 2 332 2223569999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.|.+++.++
T Consensus       161 Kaa~~~~~~~la  172 (248)
T PRK06123        161 KGAIDTMTIGLA  172 (248)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.74  E-value=4.2e-17  Score=129.21  Aligned_cols=141  Identities=13%  Similarity=0.057  Sum_probs=105.4

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc--ccccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++|+++||||+  ++||++++++|+++|++|++..|+....  .......++.++++|++|+++++++++       ++
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~i   84 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVASDESIERAFATIKERVGKI   84 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCCHHHHHHHHHHHHHHhCCC
Confidence            467899999999  7999999999999999999998863211  111122467889999999998877654       48


Q ss_pred             cEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          123 TAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       123 d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      |++|||||....              +...+++|+.++..+.+++...  +.+++|++||.....+......|+.+|.+.
T Consensus        85 D~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~~~~~~Y~asKaal  164 (252)
T PRK06079         85 DGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTYFGSERAIPNYNVMGIAKAAL  164 (252)
T ss_pred             CEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEeccCccccCCcchhhHHHHHHH
Confidence            999999996421              2346688999998887776542  125899999843223334457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       165 ~~l~~~la  172 (252)
T PRK06079        165 ESSVRYLA  172 (252)
T ss_pred             HHHHHHHH
Confidence            99988754

>PRK07041 short chain dehydrogenase; Provisional

Probab=99.74  E-value=1.1e-17  Score=130.29  Aligned_cols=135  Identities=13%  Similarity=-0.012  Sum_probs=105.3

Q ss_pred             EEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc----cCCCceeEEEccCCCHhhHHHHhcC---ccEeEEccccC
Q 028890           60 LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDG---VTAVISCVGGF  132 (202)
Q Consensus        60 lVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~---~d~vi~~a~~~  132 (202)
                      +||||+|+||++++++|+++|++|++++|+.......    ....+++++.+|+.|++++.++++.   +|++|||+|..
T Consensus         1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~id~li~~ag~~   80 (230)
T PRK07041          1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRLAAAARALGGGAPVRTAALDITDEAAVDAFFAEAGPFDHVVITAADT   80 (230)
T ss_pred             CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHhcCCCCEEEECCCCC
Confidence            5999999999999999999999999999975431110    0135688999999999999988874   79999999963


Q ss_pred             CC----------CccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 GS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~~----------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..          +...+++|+.++.++.++....+.+++|++||.....+..+...|+.+|.+.+.+++.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK~a~~~~~~~la  152 (230)
T PRK07041         81 PGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGGSLTFVSGFAAVRPSASGVLQGAINAALEALARGLA  152 (230)
T ss_pred             CCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCeEEEEECchhhcCCCCcchHHHHHHHHHHHHHHHHH
Confidence            31          234678899999999886655556799999993222334456789999999999988764

>PRK06949 short chain dehydrogenase; Provisional

Probab=99.74  E-value=2.3e-17  Score=130.67  Aligned_cols=141  Identities=12%  Similarity=0.084  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ..+++++||||+|+||++++++|+++|++|+++.|+.+....     .....++.++.+|+++++++.++++       +
T Consensus         7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   86 (258)
T PRK06949          7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAAVAHAETEAGT   86 (258)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999997643111     0113468899999999998888765       5


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cC--------CCEEEEEeccccCcCCcCCcch
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG--------VKRFVYISAADFGVANYLLQGY  179 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~--------~~~~v~~SS~~~~~~~~~~~~Y  179 (202)
                      +|++|||+|...          .+...+++|+.++.++++++..    ..        .+++|++||.....+.....+|
T Consensus        87 ~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y  166 (258)
T PRK06949         87 IDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRIINIASVAGLRVLPQIGLY  166 (258)
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEEEECcccccCCCCCccHH
Confidence            899999999532          1234678899999888877642    21        2589999994333344456789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.+.+++.++
T Consensus       167 ~~sK~a~~~~~~~la  181 (258)
T PRK06949        167 CMSKAAVVHMTRAMA  181 (258)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>PRK07831 short chain dehydrogenase; Provisional

Probab=99.74  E-value=5.8e-17  Score=128.87  Aligned_cols=141  Identities=20%  Similarity=0.119  Sum_probs=106.4

Q ss_pred             CCCCeEEEEccCC-hhHHHHHHHHHHCCCeEEEEecCCCCccc------c-cCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNG-FVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G-~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~-~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++++++||||+| +||+++++.|+++|++|++++|+..+...      . ....++.++.+|+.++++++++++     
T Consensus        15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~   94 (262)
T PRK07831         15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALIDAAVER   94 (262)
T ss_pred             cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            3578999999997 89999999999999999999887543111      0 112368899999999998887665     


Q ss_pred             --CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                        .+|++|||+|...          .+...+++|+.++..+++++..    .+ .++++++||.....+..+...|+.+|
T Consensus        95 ~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss~~~~~~~~~~~~Y~~sK  174 (262)
T PRK07831         95 LGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNASVLGWRAQHGQAHYAAAK  174 (262)
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCCcchHHHH
Confidence              5799999999532          1234567899999887777643    33 46899998833223344567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       175 aal~~~~~~la  185 (262)
T PRK07831        175 AGVMALTRCSA  185 (262)
T ss_pred             HHHHHHHHHHH
Confidence            99999999865

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.74  E-value=3e-17  Score=156.65  Aligned_cols=140  Identities=21%  Similarity=0.342  Sum_probs=108.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC----CeEEEEecCCCCccc---------------ccCCCceeEEEccCCC----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLR---------------DSWANNVIWHQGNLLS----  111 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g----~~V~~l~r~~~~~~~---------------~~~~~~~~~~~~D~~~----  111 (202)
                      ..++|+||||+||+|.+++++|++++    ++|+|+.|.......               .....+++++.+|+.+    
T Consensus       970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~gDl~~~~lg 1049 (1389)
T TIGR03443       970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGLERLRKTGTTYGIWDEEWASRIEVVLGDLSKEKFG 1049 (1389)
T ss_pred             CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHHHHHHHHHHHhCCCchhhhcceEEEeccCCCccCC
Confidence            45799999999999999999999987    799999997543110               0112478999999964    


Q ss_pred             --HhhHHHHhcCccEeEEccccCCC---CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC-------------
Q 028890          112 --SDSWKEALDGVTAVISCVGGFGS---NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA-------------  172 (202)
Q Consensus       112 --~~~~~~~~~~~d~vi~~a~~~~~---~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~-------------  172 (202)
                        .+.+.++.+++|+|||||+..+.   .......|+.|+.+++++|++.++++|+|+|| ++|+..             
T Consensus      1050 l~~~~~~~l~~~~d~iiH~Aa~~~~~~~~~~~~~~nv~gt~~ll~~a~~~~~~~~v~vSS~~v~~~~~~~~~~~~~~~~~ 1129 (1389)
T TIGR03443      1050 LSDEKWSDLTNEVDVIIHNGALVHWVYPYSKLRDANVIGTINVLNLCAEGKAKQFSFVSSTSALDTEYYVNLSDELVQAG 1129 (1389)
T ss_pred             cCHHHHHHHHhcCCEEEECCcEecCccCHHHHHHhHHHHHHHHHHHHHhCCCceEEEEeCeeecCcccccchhhhhhhcc
Confidence              45677778899999999997652   22334579999999999999988899999999 555310             


Q ss_pred             --------------CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 --------------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 --------------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                                    ....++|+.+|+++|.++..+.
T Consensus      1130 ~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~ 1165 (1389)
T TIGR03443      1130 GAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAG 1165 (1389)
T ss_pred             CCCCCcccccccccccCCCChHHHHHHHHHHHHHHH
Confidence                          0123569999999999998764

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK09072 short chain dehydrogenase; Provisional

Probab=99.74  E-value=5.9e-17  Score=128.93  Aligned_cols=140  Identities=15%  Similarity=0.175  Sum_probs=105.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc------CccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD------GVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~  124 (202)
                      ++++++||||+|+||.+++++|+++|++|++++|+......    .....++.++.+|+.|++++.++++      .+|+
T Consensus         4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~id~   83 (263)
T PRK09072          4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLARAREMGGINV   83 (263)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHhcCCCCE
Confidence            56799999999999999999999999999999997543111    0123478899999999998777654      5799


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          ....+++|+.++.++++.+.+    .+.++++++||.....+......|+.+|.+.+.++
T Consensus        84 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  163 (263)
T PRK09072         84 LINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSAMVVNVGSTFGSIGYPGYASYCASKFALRGFS  163 (263)
T ss_pred             EEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEecChhhCcCCCCccHHHHHHHHHHHHH
Confidence            9999996431          134567999999988887743    34468999988322223334567999999998887


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       164 ~~l~  167 (263)
T PRK09072        164 EALR  167 (263)
T ss_pred             HHHH
Confidence            7653

>PRK08017 oxidoreductase; Provisional

Probab=99.74  E-value=5.2e-17  Score=128.47  Aligned_cols=136  Identities=16%  Similarity=0.041  Sum_probs=102.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--------CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--------GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--------~~d~vi~~  128 (202)
                      ++++||||+|+||.++++.|+++|++|++++|+..+... ....+++.+.+|+.|.+++.++++        .+|.+||+
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~i~~~~~~~~~~ii~~   81 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVAR-MNSLGFTGILLDLDDPESVERAADEVIALTDNRLYGLFNN   81 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHH-HHhCCCeEEEeecCCHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence            589999999999999999999999999999997644211 112357889999999887766543        46899999


Q ss_pred             cccCCC----------CccchhhhHHHHHHH----HHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          129 VGGFGS----------NSYMYKINGTANINA----IRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       129 a~~~~~----------~~~~~~~n~~~~~~~----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      +|....          +...+++|+.++.++    ++.+++.+.+++|++||.....+......|+.+|.+.|.+.+.+
T Consensus        82 ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~sK~~~~~~~~~l  160 (256)
T PRK08017         82 AGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDAL  160 (256)
T ss_pred             CCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCEEEEEcCcccccCCCCccHHHHHHHHHHHHHHHH
Confidence            985321          124678888888765    56666677789999998422233445678999999999987754

>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase

Probab=99.74  E-value=4e-17  Score=127.90  Aligned_cols=137  Identities=20%  Similarity=0.224  Sum_probs=101.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      |+++||||+|+||++++++|+++|++|+++.|+......      .....++.++.+|+.|++++.++++       .+|
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (242)
T TIGR01829         1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDVSSFESCKAAVAKVEAELGPID   80 (242)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCc
Confidence            579999999999999999999999999998884322111      0113468899999999988777654       489


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +||||+|....          +...+++|+.++..+.+.    +++.+.+++|++||.....+......|+.+|.+.+.+
T Consensus        81 ~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~iss~~~~~~~~~~~~y~~sk~a~~~~  160 (242)
T TIGR01829        81 VLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWGRIINISSVNGQKGQFGQTNYSAAKAGMIGF  160 (242)
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCcchhHHHHHHHHHH
Confidence            99999986431          234567888888765444    4556678999999942222334567899999988888


Q ss_pred             HHHh
Q 028890          190 AACQ  193 (202)
Q Consensus       190 ~~~~  193 (202)
                      ++.+
T Consensus       161 ~~~l  164 (242)
T TIGR01829       161 TKAL  164 (242)
T ss_pred             HHHH
Confidence            7765

(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.

>PLN02503 fatty acyl-CoA reductase 2

Probab=99.74  E-value=4e-17  Score=142.53  Aligned_cols=116  Identities=17%  Similarity=0.204  Sum_probs=91.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCcc--c----c--------------------cCCCceeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSL--R----D--------------------SWANNVIWH  105 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~--~----~--------------------~~~~~~~~~  105 (202)
                      ++++|+|||||||||++|+++|++.+.   +|+++.|......  +    .                    ....++.++
T Consensus       118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~~lf~~l~~~~g~~~~~~~~~Ki~~v  197 (605)
T PLN02503        118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDAELFKCLQETHGKSYQSFMLSKLVPV  197 (605)
T ss_pred             cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhhhhHHHHHHhcCccccccccccEEEE
Confidence            578999999999999999999998754   7899999754310  0    0                    012468899


Q ss_pred             EccCCCH------hhHHHHhcCccEeEEccccCCC---CccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccC
Q 028890          106 QGNLLSS------DSWKEALDGVTAVISCVGGFGS---NSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFG  170 (202)
Q Consensus       106 ~~D~~~~------~~~~~~~~~~d~vi~~a~~~~~---~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~  170 (202)
                      .+|+.++      +..+.+.+++|+|||+|+....   ....+++|+.|+.+++++|++. +.++||++|| .+||
T Consensus       198 ~GDl~d~~LGLs~~~~~~L~~~vDiVIH~AA~v~f~~~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~vSTayVyG  273 (605)
T PLN02503        198 VGNVCESNLGLEPDLADEIAKEVDVIINSAANTTFDERYDVAIDINTRGPCHLMSFAKKCKKLKLFLQVSTAYVNG  273 (605)
T ss_pred             EeeCCCcccCCCHHHHHHHHhcCCEEEECccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCCeEEEccCceeec
Confidence            9999886      4566777889999999997552   3556789999999999999886 4789999999 5544

>PRK07791 short chain dehydrogenase; Provisional

Probab=99.74  E-value=4.1e-17  Score=131.66  Aligned_cols=141  Identities=11%  Similarity=0.096  Sum_probs=105.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC---------CCcc---c--ccCCCceeEEEccCCCHhhHHHHh
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG---------RSSL---R--DSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~---------~~~~---~--~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      .++++++||||+++||++++++|+++|++|++++|+.         +...   .  .....++.++.+|++|++++.+++
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~   83 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLV   83 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHH
Confidence            3578999999999999999999999999999988764         1100   0  011346778999999998887766


Q ss_pred             c-------CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcC------CCEEEEEeccccCcC
Q 028890          120 D-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG------VKRFVYISAADFGVA  172 (202)
Q Consensus       120 ~-------~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~------~~~~v~~SS~~~~~~  172 (202)
                      +       ++|++|||||...          .+...+++|+.++..+.+++.    +..      .++||++||...-.+
T Consensus        84 ~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~  163 (286)
T PRK07791         84 DAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINTSSGAGLQG  163 (286)
T ss_pred             HHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEeCchhhCcC
Confidence            4       5799999999643          134567899999988877663    221      248999999332233


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ......|+.+|.+.+.+.+.++
T Consensus       164 ~~~~~~Y~asKaal~~l~~~la  185 (286)
T PRK07791        164 SVGQGNYSAAKAGIAALTLVAA  185 (286)
T ss_pred             CCCchhhHHHHHHHHHHHHHHH
Confidence            4456789999999999888753

>PRK06947 glucose-1-dehydrogenase; Provisional

Probab=99.73  E-value=4.7e-17  Score=128.23  Aligned_cols=138  Identities=14%  Similarity=0.130  Sum_probs=99.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +++++||||+|+||.++++.|+++|++|+++.+++.....      .....++.++.+|+.|++++.++++       ++
T Consensus         2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i   81 (248)
T PRK06947          2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIAMFDAVQSAFGRL   81 (248)
T ss_pred             CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            5799999999999999999999999999876644322111      1113478899999999988876654       58


Q ss_pred             cEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHH----cC---CCEEEEEecc-c-cCcCCcCCcchHHH
Q 028890          123 TAVISCVGGFGS-----------NSYMYKINGTANINAIRAASE----KG---VKRFVYISAA-D-FGVANYLLQGYYEG  182 (202)
Q Consensus       123 d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~----~~---~~~~v~~SS~-~-~~~~~~~~~~Y~~s  182 (202)
                      |++|||||....           +...+.+|+.++..+++++.+    .+   -.+||++||. . ++. ......|+.+
T Consensus        82 d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~~~~~~-~~~~~~Y~~s  160 (248)
T PRK06947         82 DALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIASRLGS-PNEYVDYAGS  160 (248)
T ss_pred             CEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhcCCC-CCCCcccHhh
Confidence            999999996421           123478899999887755432    11   2469999983 2 332 2224579999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+++.++
T Consensus       161 K~~~~~~~~~la  172 (248)
T PRK06947        161 KGAVDTLTLGLA  172 (248)
T ss_pred             HHHHHHHHHHHH
Confidence            999998888764

>PRK08703 short chain dehydrogenase; Provisional

Probab=99.73  E-value=6.8e-17  Score=126.75  Aligned_cols=141  Identities=15%  Similarity=0.217  Sum_probs=102.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCC--HhhHHHHh------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLS--SDSWKEAL------  119 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~--~~~~~~~~------  119 (202)
                      .++++++||||+|+||.+++++|+++|++|++++|+......      ......+.++.+|+.+  .+++.+++      
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~i~~~   83 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMSAEEKEFEQFAATIAEA   83 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecccchHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999998753211      1112356778899875  33444433      


Q ss_pred             --cCccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHH
Q 028890          120 --DGVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       120 --~~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                        ..+|+||||||....           +...+++|+.++.++++++.+    .+.++++++||.....+......|+.+
T Consensus        84 ~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~Y~~s  163 (239)
T PRK08703         84 TQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDASVIFVGESHGETPKAYWGGFGAS  163 (239)
T ss_pred             hCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCEEEEEeccccccCCCCccchHHh
Confidence              358999999996321           123578999999888777643    345699999984322333445689999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+++.++
T Consensus       164 Kaa~~~~~~~la  175 (239)
T PRK08703        164 KAALNYLCKVAA  175 (239)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=99.73  E-value=4.2e-17  Score=129.53  Aligned_cols=138  Identities=19%  Similarity=0.098  Sum_probs=100.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c-cCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~-~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      |+++||||+|+||++++++|+++|++|++++|+++....   . ....++.++.+|++|+++++++++       ++|++
T Consensus         1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~g~id~l   80 (259)
T PRK08340          1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVKEAWELLGGIDAL   80 (259)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            589999999999999999999999999999997643111   0 112367889999999998887764       58999


Q ss_pred             EEccccCCC------------CccchhhhHHHHHHHHH----HHH-HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          126 ISCVGGFGS------------NSYMYKINGTANINAIR----AAS-EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       126 i~~a~~~~~------------~~~~~~~n~~~~~~~~~----~~~-~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |||||....            +...+.+|+.++..+.+    .+. +.+.++||++||.....+......|+.+|.+.+.
T Consensus        81 i~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g~iv~isS~~~~~~~~~~~~y~~sKaa~~~  160 (259)
T PRK08340         81 VWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKGVLVYLSSVSVKEPMPPLVLADVTRAGLVQ  160 (259)
T ss_pred             EECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCEEEEEeCcccCCCCCCchHHHHHHHHHHH
Confidence            999996321            11234566666554433    333 3345699999994333344456789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       161 ~~~~la  166 (259)
T PRK08340        161 LAKGVS  166 (259)
T ss_pred             HHHHHH
Confidence            988764

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=99.73  E-value=8.1e-17  Score=127.98  Aligned_cols=140  Identities=13%  Similarity=0.060  Sum_probs=103.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|+++.|+..+...      .....++.++.+|++|++++.++++       
T Consensus         5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~g   84 (261)
T PRK08936          5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNLIQTAVKEFG   84 (261)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999888885432111      1113467789999999998877665       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHH----HHHHcC-CCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIR----AASEKG-VKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~----~~~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|++|||||....          +...+++|+.++..+.+    .+.+.+ .+++|++||.....+.+....|+.+|.+
T Consensus        85 ~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~~sKaa  164 (261)
T PRK08936         85 TLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHEQIPWPLFVHYAASKGG  164 (261)
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccccCCCCCCcccHHHHHH
Confidence            47999999996431          23457889888775544    445544 3689999994323334456789999988


Q ss_pred             HHHHHHHh
Q 028890          186 SSDVAACQ  193 (202)
Q Consensus       186 ~E~~~~~~  193 (202)
                      .+.+.+.+
T Consensus       165 ~~~~~~~l  172 (261)
T PRK08936        165 VKLMTETL  172 (261)
T ss_pred             HHHHHHHH
Confidence            88777765

>TIGR02415 23BDH acetoin reductases

Probab=99.73  E-value=4.1e-17  Score=128.90  Aligned_cols=137  Identities=18%  Similarity=0.219  Sum_probs=103.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      ++++||||+|+||.+++++|++.|++|+++.|+......     .....++.++.+|+.|++++.++++       .+|+
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~   80 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAIDQAAEKFGGFDV   80 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            579999999999999999999999999999987532111     1113468899999999998877654       4799


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ||||+|...          .+...+++|+.++..+++++.    +.+ .+++|++||.....+......|+.+|.+.+.+
T Consensus        81 vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~  160 (254)
T TIGR02415        81 MVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEGNPILSAYSSTKFAVRGL  160 (254)
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCCCCCCcchHHHHHHHHHH
Confidence            999998632          123457889999887766653    333 36899999832222344567899999999999


Q ss_pred             HHHh
Q 028890          190 AACQ  193 (202)
Q Consensus       190 ~~~~  193 (202)
                      ++.+
T Consensus       161 ~~~l  164 (254)
T TIGR02415       161 TQTA  164 (254)
T ss_pred             HHHH
Confidence            8865

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional

Probab=99.73  E-value=3.7e-17  Score=128.51  Aligned_cols=139  Identities=17%  Similarity=0.082  Sum_probs=100.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEe-cCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhcC-------c
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALDG-------V  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~-r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~-------~  122 (202)
                      |++++||||+|+||++++++|+++|++|+++. |+......     .....++.++.+|+.|++++++++++       +
T Consensus         1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~~~~~~~~i   80 (247)
T PRK09730          1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTAIDQHDEPL   80 (247)
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHHHHHhCCCC
Confidence            46899999999999999999999999998754 44322110     11124578899999999988887763       6


Q ss_pred             cEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHHc-------CCCEEEEEecc-ccCcCCcCCcchHHHH
Q 028890          123 TAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK-------GVKRFVYISAA-DFGVANYLLQGYYEGK  183 (202)
Q Consensus       123 d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~-------~~~~~v~~SS~-~~~~~~~~~~~Y~~sK  183 (202)
                      |++|||+|....           +...+++|+.++..+.+++...       ..++||++||. .+...+.....|+.+|
T Consensus        81 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~~~~~~~~~~~~Y~~sK  160 (247)
T PRK09730         81 AALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAASRLGAPGEYVDYAASK  160 (247)
T ss_pred             CEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchhhccCCCCcccchHhHH
Confidence            899999996421           1246788999998777665332       13579999993 3222222235799999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      ...|.+++.+.
T Consensus       161 ~~~~~~~~~l~  171 (247)
T PRK09730        161 GAIDTLTTGLS  171 (247)
T ss_pred             HHHHHHHHHHH
Confidence            99998887653

>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.73  E-value=6.9e-17  Score=119.98  Aligned_cols=137  Identities=20%  Similarity=0.195  Sum_probs=105.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccc--------cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD--------SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~--------~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ++++||||+|+||.+++++|+++|+ .|+++.|+.......        ....++.++.+|+++++++.++++       
T Consensus         1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   80 (180)
T smart00822        1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACDVADRAALAAALAAIPARLG   80 (180)
T ss_pred             CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4799999999999999999999996 688888865432110        113467789999999988877655       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      .+|.+||++|...          .+...+++|+.++.++++++.+.+.++++++||.....+......|+.+|.+.+.++
T Consensus        81 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~ii~~ss~~~~~~~~~~~~y~~sk~~~~~~~  160 (180)
T smart00822       81 PLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLDFFVLFSSVAGVLGNPGQANYAAANAFLDALA  160 (180)
T ss_pred             CeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcceEEEEccHHHhcCCCCchhhHHHHHHHHHHH
Confidence            3699999998532          123457889999999999998878889999999422223345578999999999998


Q ss_pred             HHh
Q 028890          191 ACQ  193 (202)
Q Consensus       191 ~~~  193 (202)
                      +.+
T Consensus       161 ~~~  163 (180)
T smart00822      161 AHR  163 (180)
T ss_pred             HHH
Confidence            764

It uses NADPH to reduce the keto group to a hydroxy group.

>PRK07578 short chain dehydrogenase; Provisional

Probab=99.73  E-value=1.3e-16  Score=122.01  Aligned_cols=125  Identities=17%  Similarity=0.099  Sum_probs=99.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---CccEeEEccccCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVGGFG  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~~~~  133 (202)
                      |+++||||+|+||++++++|.++ ++|++++|+..            .+.+|++|+++++++++   ++|++|||||...
T Consensus         1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~~------------~~~~D~~~~~~~~~~~~~~~~id~lv~~ag~~~   67 (199)
T PRK07578          1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSSG------------DVQVDITDPASIRALFEKVGKVDAVVSAAGKVH   67 (199)
T ss_pred             CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCCC------------ceEecCCChHHHHHHHHhcCCCCEEEECCCCCC
Confidence            47999999999999999999999 99999998642            46899999999988776   6899999999532


Q ss_pred             ----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          134 ----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                                ++...+++|+.++.++++++...  +.++|+++||.....+.+....|+.+|.+.+.+.+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~Y~~sK~a~~~~~~~la  140 (199)
T PRK07578         68 FAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGGSFTLTSGILSDEPIPGGASAATVNGALEGFVKAAA  140 (199)
T ss_pred             CCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcccccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence                      12345678999999999887542  23589999983322334456789999999999988754

>TIGR02685 pter_reduc_Leis pteridine reductase

Probab=99.72  E-value=5.5e-17  Score=129.47  Aligned_cols=138  Identities=14%  Similarity=0.126  Sum_probs=99.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhH----HHHh------
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSW----KEAL------  119 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~----~~~~------  119 (202)
                      ++++||||+|+||++++++|+++|++|+++.|+......       .....++.++.+|++|++++    ++++      
T Consensus         2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~   81 (267)
T TIGR02685         2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRA   81 (267)
T ss_pred             CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHc
Confidence            589999999999999999999999999998765432111       11123566789999998754    3332      


Q ss_pred             -cCccEeEEccccCCC---------------------CccchhhhHHHHHHHHHHHHHcC----------CCEEEEEecc
Q 028890          120 -DGVTAVISCVGGFGS---------------------NSYMYKINGTANINAIRAASEKG----------VKRFVYISAA  167 (202)
Q Consensus       120 -~~~d~vi~~a~~~~~---------------------~~~~~~~n~~~~~~~~~~~~~~~----------~~~~v~~SS~  167 (202)
                       .++|++|||||....                     +...+++|+.++..+.+++....          ..+++++||.
T Consensus        82 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~~s~  161 (267)
T TIGR02685        82 FGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRAEQRSTNLSIVNLCDA  161 (267)
T ss_pred             cCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhcccccCCCCeEEEEehhh
Confidence             258999999995321                     12347889999998887764321          2368888884


Q ss_pred             ccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          168 DFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       168 ~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....+.....+|+.+|.+.+.+.+.+.
T Consensus       162 ~~~~~~~~~~~Y~asK~a~~~~~~~la  188 (267)
T TIGR02685       162 MTDQPLLGFTMYTMAKHALEGLTRSAA  188 (267)
T ss_pred             hccCCCcccchhHHHHHHHHHHHHHHH
Confidence            333344556789999999999988763

Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.

>PRK05855 short chain dehydrogenase; Validated

Probab=99.72  E-value=5.3e-17  Score=142.16  Aligned_cols=140  Identities=14%  Similarity=0.114  Sum_probs=107.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ..+++++||||+|+||++++++|.++|++|++++|+......     .....++.++.+|++|++++.++++       .
T Consensus       313 ~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  392 (582)
T PRK05855        313 FSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEHGV  392 (582)
T ss_pred             CCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            356799999999999999999999999999999997543111     1113468899999999998887775       3


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcC-CCEEEEEec-cccCcCCcCCcchHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKG-VKRFVYISA-ADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~-~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|++|||||....          +...+++|+.|+.++.+++    .+.+ .++||++|| +.+. +......|+.+|++
T Consensus       393 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~~~~-~~~~~~~Y~~sKaa  471 (582)
T PRK05855        393 PDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAAAYA-PSRSLPAYATSKAA  471 (582)
T ss_pred             CcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhcc-CCCCCcHHHHHHHH
Confidence            7999999996431          2346779999999887765    3333 359999999 4443 34456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.+.
T Consensus       472 ~~~~~~~l~  480 (582)
T PRK05855        472 VLMLSECLR  480 (582)
T ss_pred             HHHHHHHHH
Confidence            998887753

>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.72  E-value=1e-16  Score=127.26  Aligned_cols=141  Identities=15%  Similarity=0.077  Sum_probs=103.3

Q ss_pred             CCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCC---------Cc-c----c--ccCCCceeEEEccCCCHhhH
Q 028890           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGR---------SS-L----R--DSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        54 ~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~---------~~-~----~--~~~~~~~~~~~~D~~~~~~~  115 (202)
                      .++++++||||+|  +||.+++++|+++|++|+++.|...         .. .    .  .....++.++.+|++|++++
T Consensus         4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~i   83 (256)
T PRK12859          4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELDLTQNDAP   83 (256)
T ss_pred             cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHH
Confidence            4678999999995  8999999999999999988754310         00 0    0  11134678899999999988


Q ss_pred             HHHhc-------CccEeEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCc
Q 028890          116 KEALD-------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANY  174 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~  174 (202)
                      .++++       .+|++|||||....          +...+++|+.++..+.++    +++.+.++||++||.....+..
T Consensus        84 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~  163 (256)
T PRK12859         84 KELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGGRIINMTSGQFQGPMV  163 (256)
T ss_pred             HHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCeEEEEEcccccCCCCC
Confidence            87775       37999999996421          234578899998877544    3444456999999943333344


Q ss_pred             CCcchHHHHHHHHHHHHHhc
Q 028890          175 LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +...|+.+|.+.+.+.+++.
T Consensus       164 ~~~~Y~~sK~a~~~l~~~la  183 (256)
T PRK12859        164 GELAYAATKGAIDALTSSLA  183 (256)
T ss_pred             CchHHHHHHHHHHHHHHHHH
Confidence            56789999999999988753

>PRK07201 short chain dehydrogenase; Provisional

Probab=99.72  E-value=6.4e-17  Score=144.08  Aligned_cols=140  Identities=14%  Similarity=0.114  Sum_probs=108.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|+.|++++.++++       +
T Consensus       369 ~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~  448 (657)
T PRK07201        369 LVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVKDILAEHGH  448 (657)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999997643111     1113468899999999999888776       5


Q ss_pred             ccEeEEccccCC------------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcchHHHHH
Q 028890          122 VTAVISCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       122 ~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~  184 (202)
                      +|++|||||...            .+...+++|+.++.++++++    ++.+.++||++|| ..+. +......|+.+|.
T Consensus       449 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~-~~~~~~~Y~~sK~  527 (657)
T PRK07201        449 VDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFGHVVNVSSIGVQT-NAPRFSAYVASKA  527 (657)
T ss_pred             CCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEECChhhcC-CCCCcchHHHHHH
Confidence            899999999531            12345788999988776664    4556679999999 4333 2334568999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+++.+.
T Consensus       528 a~~~~~~~la  537 (657)
T PRK07201        528 ALDAFSDVAA  537 (657)
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative

Probab=99.72  E-value=7.3e-17  Score=126.44  Aligned_cols=135  Identities=16%  Similarity=0.131  Sum_probs=101.4

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++||||+|+||.+++++|+++|++|+++.|+......      .....++.++.+|+.|++++.++++       .+|++
T Consensus         1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i~~l   80 (239)
T TIGR01831         1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFDVADRVACRTLLEADIAEHGAYYGV   80 (239)
T ss_pred             CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEccCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            5899999999999999999999999998876432111      1123468899999999998877665       47999


Q ss_pred             EEccccCC----------CCccchhhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          126 ISCVGGFG----------SNSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       126 i~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      |||+|...          ++...+++|+.++.++++++.     +.+.+++|++||.....+......|+.+|.+.+.+.
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~vsS~~~~~~~~~~~~Y~~sK~a~~~~~  160 (239)
T TIGR01831        81 VLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGGRIITLASVSGVMGNRGQVNYSAAKAGLIGAT  160 (239)
T ss_pred             EECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEEEEcchhhccCCCCCcchHHHHHHHHHHH
Confidence            99999643          123467889999998888652     234569999999322223345578999999998887


Q ss_pred             HHh
Q 028890          191 ACQ  193 (202)
Q Consensus       191 ~~~  193 (202)
                      +.+
T Consensus       161 ~~l  163 (239)
T TIGR01831       161 KAL  163 (239)
T ss_pred             HHH
Confidence            765

This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.

>PRK06953 short chain dehydrogenase; Provisional

Probab=99.72  E-value=1.6e-16  Score=123.41  Aligned_cols=138  Identities=14%  Similarity=0.083  Sum_probs=104.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-----CccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d~vi~~a~  130 (202)
                      |++++||||+|+||++++++|+++|++|++++|+..... .....+++++.+|++|.+++.++++     ++|++|||+|
T Consensus         1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~~~-~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~d~vi~~ag   79 (222)
T PRK06953          1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAALA-ALQALGAEALALDVADPASVAGLAWKLDGEALDAAVYVAG   79 (222)
T ss_pred             CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHHHH-HHHhccceEEEecCCCHHHHHHHHHHhcCCCCCEEEECCC
Confidence            468999999999999999999999999999998754321 1112356789999999998887642     4899999999


Q ss_pred             cCCC------------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEecc--ccCcCCc-CCcchHHHHHHHHHHHHH
Q 028890          131 GFGS------------NSYMYKINGTANINAIRAASE---KGVKRFVYISAA--DFGVANY-LLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       131 ~~~~------------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~--~~~~~~~-~~~~Y~~sK~~~E~~~~~  192 (202)
                      ....            +...+++|+.++.++++++.+   ...++++++||.  .++.... +...|+.+|.+.+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~  159 (222)
T PRK06953         80 VYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGGVLAVLSSRMGSIGDATGTTGWLYRASKAALNDALRA  159 (222)
T ss_pred             cccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCCeEEEEcCcccccccccCCCccccHHhHHHHHHHHHH
Confidence            7521            234678999999999988864   223579999883  2332222 223699999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       160 ~~  161 (222)
T PRK06953        160 AS  161 (222)
T ss_pred             Hh
Confidence            64

>PRK06198 short chain dehydrogenase; Provisional

Probab=99.72  E-value=6.6e-17  Score=128.22  Aligned_cols=140  Identities=16%  Similarity=0.247  Sum_probs=106.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCe-EEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++ |++++|+..+...     .....++.++.+|+.+++++.++++       
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQADLSDVEDCRRVVAAADEAFG   83 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46789999999999999999999999998 9999987543211     1113467889999999998887765       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEec-cccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISA-ADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS-~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||+|....          +...+++|+.++.++++++.+    .+ .+++|++|| ..++ +......|+.+|.
T Consensus        84 ~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~~~~-~~~~~~~Y~~sK~  162 (260)
T PRK06198         84 RLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMSAHG-GQPFLAAYCASKG  162 (260)
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCccccc-CCCCcchhHHHHH
Confidence            47999999996431          134578899999988887743    22 358999999 3333 3344578999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.|.+++.+.
T Consensus       163 a~~~~~~~~a  172 (260)
T PRK06198        163 ALATLTRNAA  172 (260)
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase

Probab=99.72  E-value=9.6e-17  Score=125.45  Aligned_cols=134  Identities=16%  Similarity=0.147  Sum_probs=102.9

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhcC-------ccEe
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALDG-------VTAV  125 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~-------~d~v  125 (202)
                      ++|||++|+||++++++|+++|++|++++|+......      .....++.++.+|+.|++++++++++       +|+|
T Consensus         1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~v   80 (239)
T TIGR01830         1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVEEIEEELGPIDIL   80 (239)
T ss_pred             CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            5899999999999999999999999999887532111      11123578999999999988887653       6999


Q ss_pred             EEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEecc--ccCcCCcCCcchHHHHHHHHHH
Q 028890          126 ISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAA--DFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       126 i~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~--~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ||++|....          +...+++|+.++.++++++.+    .+.++|+++||.  .++  ......|+.+|.+.+.+
T Consensus        81 i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~v~~sS~~~~~g--~~~~~~y~~~k~a~~~~  158 (239)
T TIGR01830        81 VNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSGRIINISSVVGLMG--NAGQANYAASKAGVIGF  158 (239)
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCeEEEEECCccccCC--CCCCchhHHHHHHHHHH
Confidence            999996431          234567899999999888764    455699999993  333  33457899999999988


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       159 ~~~l~  163 (239)
T TIGR01830       159 TKSLA  163 (239)
T ss_pred             HHHHH
Confidence            77753

This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.

>PLN00016 RNA-binding protein; Provisional

Probab=99.71  E-value=1e-16  Score=134.15  Aligned_cols=128  Identities=19%  Similarity=0.222  Sum_probs=95.6

Q ss_pred             CCCCeEEEE----ccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----------ccCCCceeEEEccCCCHhhHHHHh
Q 028890           54 PPSEKLLVL----GGNGFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        54 ~~~~~vlVt----Ga~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----------~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      ..+++|+||    ||+|+||++++++|+++||+|++++|+......          .....+++++++|+.|.+.+. ..
T Consensus        50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~~~-~~  128 (378)
T PLN00016         50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKMKKEPFSRFSELSSAGVKTVWGDPADVKSKV-AG  128 (378)
T ss_pred             cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhhccCchhhhhHhhhcCceEEEecHHHHHhhh-cc
Confidence            456799999    999999999999999999999999998653111          011235889999987633322 22


Q ss_pred             cCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc-------CCcchHHHHHHHHHHHH
Q 028890          120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY-------LLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~-------~~~~Y~~sK~~~E~~~~  191 (202)
                      .++|+|||+++.          +..++.+++++|++.|+++|||+|| .+|+....       +..++. +|..+|.+++
T Consensus       129 ~~~d~Vi~~~~~----------~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~~~~~p~~E~~~~~p~~-sK~~~E~~l~  197 (378)
T PLN00016        129 AGFDVVYDNNGK----------DLDEVEPVADWAKSPGLKQFLFCSSAGVYKKSDEPPHVEGDAVKPKA-GHLEVEAYLQ  197 (378)
T ss_pred             CCccEEEeCCCC----------CHHHHHHHHHHHHHcCCCEEEEEccHhhcCCCCCCCCCCCCcCCCcc-hHHHHHHHHH
Confidence            479999999763          2457789999999999999999999 67764321       112333 8999999887


Q ss_pred             Hh
Q 028890          192 CQ  193 (202)
Q Consensus       192 ~~  193 (202)
                      .+
T Consensus       198 ~~  199 (378)
T PLN00016        198 KL  199 (378)
T ss_pred             Hc
Confidence            64

>PRK06125 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1.4e-16  Score=126.57  Aligned_cols=141  Identities=12%  Similarity=0.113  Sum_probs=107.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc---CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD---GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~  124 (202)
                      .++++++|||++|+||+++++.|+++|++|++++|+..+...      .....++.++.+|+.|++++.++++   ++|+
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            356899999999999999999999999999999997643211      1113467889999999998887765   5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||+|...          ++...+++|+.+...+.+++    ++.+.+++|++||.....+......|+.+|.+.+.+.
T Consensus        85 lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~y~ask~al~~~~  164 (259)
T PRK06125         85 LVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSGVIVNVIGAAGENPDADYICGSAGNAALMAFT  164 (259)
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEecCccccCCCCCchHhHHHHHHHHHHH
Confidence            999999632          12446788999998777765    4444468999998433333444567899999999988


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       165 ~~la  168 (259)
T PRK06125        165 RALG  168 (259)
T ss_pred             HHHH
Confidence            8753

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=1.5e-16  Score=127.72  Aligned_cols=139  Identities=10%  Similarity=0.003  Sum_probs=102.7

Q ss_pred             CCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCC--ccc---ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           55 PSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRS--SLR---DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        55 ~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~--~~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ++|+++||||+  ++||+++++.|+++|++|++++|+...  ...   ...... .++.+|++|++++.++++       
T Consensus         4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~-~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSD-YVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCc-eEEEecCCCHHHHHHHHHHHHHHcC
Confidence            56899999997  799999999999999999998887421  111   111123 578999999998877665       


Q ss_pred             CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||...              .+...+++|+.++..+.+++...  .-+++|++||.....+.+....|+.+|+
T Consensus        83 ~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS~~~~~~~~~~~~Y~asKa  162 (274)
T PRK08415         83 KIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSYLGGVKYVPHYNVMGVAKA  162 (274)
T ss_pred             CCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEecCCCccCCCcchhhhhHHH
Confidence            4799999999632              12346799999998887776532  1258999998322223334567999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       163 al~~l~~~la  172 (274)
T PRK08415        163 ALESSVRYLA  172 (274)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=4e-16  Score=124.04  Aligned_cols=141  Identities=11%  Similarity=0.024  Sum_probs=103.2

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc--cc----ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LR----DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~----~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+  ++||.+++++|+++|++|++++|+....  ..    .....++.++.+|+.|+++++++++     
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            357899999997  8999999999999999999988753211  11    1113467889999999998877664     


Q ss_pred             --CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHH
Q 028890          121 --GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 --~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                        ++|++|||||....              +...+++|+.+...+.+++...  ...++|++||.....+......|+.+
T Consensus        85 ~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~as  164 (257)
T PRK08594         85 VGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLTYLGGERVVQNYNVMGVA  164 (257)
T ss_pred             CCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEcccCCccCCCCCchhHHH
Confidence              48999999985421              1235577888888777766532  12589999994322333445689999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+.++
T Consensus       165 Kaal~~l~~~la  176 (257)
T PRK08594        165 KASLEASVKYLA  176 (257)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=1.7e-16  Score=126.10  Aligned_cols=141  Identities=9%  Similarity=-0.033  Sum_probs=103.7

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc--ccc--cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~--~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+  ++||++++++|+++|++|++++|+....  ...  .......++.+|++|+++++++++       
T Consensus         8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   87 (258)
T PRK07533          8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWG   87 (258)
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcC
Confidence            467899999998  5999999999999999999998875321  011  011235678999999998877664       


Q ss_pred             CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||...              .+...+++|+.++..+.+++...  .-+++|++||.....+......|+.+|.
T Consensus        88 ~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~iss~~~~~~~~~~~~Y~asKa  167 (258)
T PRK07533         88 RLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMSYYGAEKVVENYNLMGPVKA  167 (258)
T ss_pred             CCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEeccccccCCccchhhHHHHH
Confidence            4799999998532              12457789999999888876432  1258999998322223334567999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       168 al~~l~~~la  177 (258)
T PRK07533        168 ALESSVRYLA  177 (258)
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=99.71  E-value=2.6e-16  Score=132.10  Aligned_cols=136  Identities=18%  Similarity=0.114  Sum_probs=101.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc--cCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|++++....  ....++..+.+|+.|++++.+.+.++|++|||||.
T Consensus       176 l~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~~l~~IDiLInnAGi  255 (406)
T PRK07424        176 LKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAELLEKVDILIINHGI  255 (406)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHHHhCCCCEEEECCCc
Confidence            4678999999999999999999999999999999875432111  11234678899999999999999999999999986


Q ss_pred             CC-------CCccchhhhHHHHHHHHHHHHH----cCC---C-EEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          132 FG-------SNSYMYKINGTANINAIRAASE----KGV---K-RFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       132 ~~-------~~~~~~~~n~~~~~~~~~~~~~----~~~---~-~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      ..       ++...+++|+.++.++++++.+    .+.   + .++.+|++  +..+.....|++||.+.+.+..
T Consensus       256 ~~~~~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa--~~~~~~~~~Y~ASKaAl~~l~~  328 (406)
T PRK07424        256 NVHGERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEA--EVNPAFSPLYELSKRALGDLVT  328 (406)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEccc--cccCCCchHHHHHHHHHHHHHH
Confidence            42       2245789999999999888643    221   2 34555443  2222223569999999988753

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.71  E-value=1.5e-16  Score=125.66  Aligned_cols=142  Identities=14%  Similarity=0.106  Sum_probs=109.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc----cCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ..+++.|+||||++++|+.++.+++++|.++.+.+.+.....+.    ...+++....||++|.+++.+..+       .
T Consensus        35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~  114 (300)
T KOG1201|consen   35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGD  114 (300)
T ss_pred             hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            35788999999999999999999999999998988876542221    111478999999999998877665       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|+|||....          -+..+++|+.++....+    .+.+.+-+++|.++|...-.+.....+|++||+++.
T Consensus       115 V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~GHIV~IaS~aG~~g~~gl~~YcaSK~a~v  194 (300)
T KOG1201|consen  115 VDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAV  194 (300)
T ss_pred             ceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCceEEEehhhhcccCCccchhhhhhHHHHH
Confidence            8999999996431          13578899988876544    456666679999999544445566789999999998


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+-+++.
T Consensus       195 GfhesL~  201 (300)
T KOG1201|consen  195 GFHESLS  201 (300)
T ss_pred             HHHHHHH
Confidence            7776653

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.71  E-value=3.8e-16  Score=124.61  Aligned_cols=141  Identities=10%  Similarity=0.009  Sum_probs=102.3

Q ss_pred             CCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCC--cccc--cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRS--SLRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~--~~~~--~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||++  +||+++++.|+++|++|++.+|+...  ....  ...+...++.+|+.|+++++++++       
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            3568999999985  99999999999999999988886311  1111  112346688999999999887764       


Q ss_pred             CccEeEEccccCCC---------------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 ~~d~vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                      ++|++|||||....               +...+++|+.++..+.+++...  +.+++|++||.....+......|+.+|
T Consensus        84 ~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~iss~~~~~~~~~~~~Y~asK  163 (262)
T PRK07984         84 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAK  163 (262)
T ss_pred             CCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEecCCCCCCCCCcchhHHHH
Confidence            47999999985321               1234678888888777766431  225899999843323334456899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       164 aal~~l~~~la  174 (262)
T PRK07984        164 ASLEANVRYMA  174 (262)
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=99.71  E-value=1.5e-16  Score=141.82  Aligned_cols=141  Identities=21%  Similarity=0.212  Sum_probs=105.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c----cCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D----SWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~----~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......   .    .....+..+.+|++|++++.++++      
T Consensus       412 l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~i~~~~  491 (676)
T TIGR02632       412 LARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFADVALAY  491 (676)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHHHHHhc
Confidence            357899999999999999999999999999999997543111   0    012357789999999999888776      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcC-CCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKG-VKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||....          +...+++|+.++..+.+.+    ++.+ .++||++||...-.+......|+.+|.
T Consensus       492 g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~~a~~~~~~~~aY~aSKa  571 (676)
T TIGR02632       492 GGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASKNAVYAGKNASAYSAAKA  571 (676)
T ss_pred             CCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeChhhcCCCCCCHHHHHHHH
Confidence             58999999996431          2345678888877665443    4444 358999999322223344578999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+++.++
T Consensus       572 A~~~l~r~lA  581 (676)
T TIGR02632       572 AEAHLARCLA  581 (676)
T ss_pred             HHHHHHHHHH
Confidence            9999998864

>PLN02780 ketoreductase/ oxidoreductase

Probab=99.71  E-value=1.3e-16  Score=130.65  Aligned_cols=140  Identities=16%  Similarity=0.195  Sum_probs=101.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccC-CCceeEEEccCCC--HhhHH---HHhcC-
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSW-ANNVIWHQGNLLS--SDSWK---EALDG-  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~-~~~~~~~~~D~~~--~~~~~---~~~~~-  121 (202)
                      .+++++||||+|+||++++++|+++|++|++++|++++...      ... ..++..+.+|+.+  .+.++   +.+.+ 
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~l~~~~~~~  131 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFSGDIDEGVKRIKETIEGL  131 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECCCCcHHHHHHHHHHhcCC
Confidence            46899999999999999999999999999999998654211      111 2357788899985  33333   33343 


Q ss_pred             -ccEeEEccccCCC------------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcC-CcCCcchHHH
Q 028890          122 -VTAVISCVGGFGS------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVA-NYLLQGYYEG  182 (202)
Q Consensus       122 -~d~vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~-~~~~~~Y~~s  182 (202)
                       +|++|||||....            ....+++|+.++..+.+++    .+.+.+++|++|| ..+..+ .+....|+.|
T Consensus       132 didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~a~~~~~~~p~~~~Y~aS  211 (320)
T PLN02780        132 DVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKGAIINIGSGAAIVIPSDPLYAVYAAT  211 (320)
T ss_pred             CccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCccchHHHHH
Confidence             5699999996421            1246789999998877765    3456679999999 433222 2446789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+.+.
T Consensus       212 Kaal~~~~~~L~  223 (320)
T PLN02780        212 KAYIDQFSRCLY  223 (320)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>PRK07832 short chain dehydrogenase; Provisional

Probab=99.71  E-value=1.5e-16  Score=127.29  Aligned_cols=137  Identities=14%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      |+++||||+|+||.+++++|+++|++|++++|+.+....      ........++.+|+.|++++.++++       ++|
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id   80 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISDYDAVAAFAADIHAAHGSMD   80 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence            479999999999999999999999999999987543111      1111234567899999988776654       479


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----c-CCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASE----K-GVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~-~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|||+|...          .+...+++|+.++..+++++..    . ..++||++||.....+.+....|+.+|.+.+.
T Consensus        81 ~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a~~~  160 (272)
T PRK07832         81 VVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLVALPWHAAYSASKFGLRG  160 (272)
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccCCCCCCcchHHHHHHHHH
Confidence            9999998632          1234678999999999888642    2 24699999994222233445689999998888


Q ss_pred             HHHHh
Q 028890          189 VAACQ  193 (202)
Q Consensus       189 ~~~~~  193 (202)
                      +.+..
T Consensus       161 ~~~~l  165 (272)
T PRK07832        161 LSEVL  165 (272)
T ss_pred             HHHHH
Confidence            77654

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.70  E-value=1.9e-16  Score=126.89  Aligned_cols=140  Identities=9%  Similarity=-0.004  Sum_probs=103.8

Q ss_pred             CCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCC--Cccccc--CCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGR--SSLRDS--WANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~--~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+  ++||.+++++|+++|++|+++.|+..  +.....  ......++++|++|+++++++++       +
T Consensus         9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   88 (272)
T PRK08159          9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKWGK   88 (272)
T ss_pred             cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhcCC
Confidence            56899999997  89999999999999999988877531  111100  11235678999999998887665       4


Q ss_pred             ccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          122 VTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       122 ~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|++|||||...              .+...+++|+.++..+++++...  +.+++|++||.....+.+....|+.+|++
T Consensus        89 iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss~~~~~~~p~~~~Y~asKaa  168 (272)
T PRK08159         89 LDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTYYGAEKVMPHYNVMGVAKAA  168 (272)
T ss_pred             CcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEeccccccCCCcchhhhhHHHH
Confidence            799999999642              12446789999999988887543  23689999984222333445679999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       169 l~~l~~~la  177 (272)
T PRK08159        169 LEASVKYLA  177 (272)
T ss_pred             HHHHHHHHH
Confidence            999988763

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.70  E-value=1.5e-16  Score=127.51  Aligned_cols=141  Identities=9%  Similarity=-0.019  Sum_probs=102.7

Q ss_pred             CCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCc--cccc--CCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSS--LRDS--WANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~~--~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||++  +||++++++|+++|++|++.+|+....  ....  ......++.+|++|+++++++++       
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            3578999999997  999999999999999999988864211  0110  11223578999999998877765       


Q ss_pred             CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      .+|++|||||...              ++...+++|+.++.++.+++...  ..+++|++||.....+.+....|+.+|+
T Consensus        85 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~asKa  164 (271)
T PRK06505         85 KLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTYGGSTRVMPNYNVMGVAKA  164 (271)
T ss_pred             CCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcCCCccccCCccchhhhhHH
Confidence            4899999999642              12346788999998887766432  1258999998422223334568999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       165 Al~~l~r~la  174 (271)
T PRK06505        165 ALEASVRYLA  174 (271)
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>PRK06940 short chain dehydrogenase; Provisional

Probab=99.70  E-value=2.4e-16  Score=126.52  Aligned_cols=137  Identities=17%  Similarity=0.106  Sum_probs=101.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc------CccE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------GVTA  124 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~  124 (202)
                      +|+++|||+ |+||++++++|. +|++|++++|+......     .....++.++.+|+.|++++.++++      ++|+
T Consensus         2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~   79 (275)
T PRK06940          2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKALAATAQTLGPVTG   79 (275)
T ss_pred             CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence            568899998 799999999996 89999999997543111     1112467889999999998887765      4899


Q ss_pred             eEEccccCC---CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEecc-ccCcC-------------------------C
Q 028890          125 VISCVGGFG---SNSYMYKINGTANINAIRAASEK--GVKRFVYISAA-DFGVA-------------------------N  173 (202)
Q Consensus       125 vi~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~-~~~~~-------------------------~  173 (202)
                      +|||||...   ++...+++|+.++.++++++...  ..+++|++||. .....                         .
T Consensus        80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (275)
T PRK06940         80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALTAEQERALATTPTEELLSLPFLQP  159 (275)
T ss_pred             EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccchhhhccccccccccccccccccc
Confidence            999999643   35678899999999998887543  12467788873 22111                         0


Q ss_pred             ----cCCcchHHHHHHHHHHHHHhc
Q 028890          174 ----YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 ----~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                          .....|+.||++.+.+.+.++
T Consensus       160 ~~~~~~~~~Y~asKaa~~~~~~~la  184 (275)
T PRK06940        160 DAIEDSLHAYQIAKRANALRVMAEA  184 (275)
T ss_pred             cccCCccchhHHHHHHHHHHHHHHH
Confidence                134679999999998888653

>PRK08324 short chain dehydrogenase; Validated

Probab=99.70  E-value=1.6e-16  Score=142.07  Aligned_cols=141  Identities=16%  Similarity=0.179  Sum_probs=108.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccC--CCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSW--ANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~--~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ..+++++||||+|+||++++++|+++|++|++++|+......  ...  ..++.++.+|++|++++.++++       ++
T Consensus       420 l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i  499 (681)
T PRK08324        420 LAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV  499 (681)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            356899999999999999999999999999999998643211  001  1378899999999998887765       58


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCC-CEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGV-KRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~-~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |+||||||....          +...+++|+.++.++++++.    +.+. ++||++||...-.+......|+.+|.+.+
T Consensus       500 DvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~~~~~~~~~~~Y~asKaa~~  579 (681)
T PRK08324        500 DIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKNAVNPGPNFGAYGAAKAAEL  579 (681)
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCccccCCCCCcHHHHHHHHHHH
Confidence            999999995431          23467899999998876663    4443 69999999322223344678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       580 ~l~~~la  586 (681)
T PRK08324        580 HLVRQLA  586 (681)
T ss_pred             HHHHHHH
Confidence            9998864

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.70  E-value=1.4e-16  Score=136.17  Aligned_cols=141  Identities=16%  Similarity=0.065  Sum_probs=106.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-cc-cCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-RD-SWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~~-~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||.++++.|.++|++|++++|...... .. ....+..++.+|++|++++.++++       ++|+
T Consensus       208 ~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~  287 (450)
T PRK08261        208 LAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLDI  287 (450)
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCCE
Confidence            46789999999999999999999999999999988533211 11 011234688999999998877665       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHHHcC----CCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEKG----VKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~~----~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      ||||||...          .+...+++|+.++.++.+++....    .++||++||...-.+......|+.+|...+.++
T Consensus       288 vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~~~~g~~~~~~Y~asKaal~~~~  367 (450)
T PRK08261        288 VVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSISGIAGNRGQTNYAASKAGVIGLV  367 (450)
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChhhcCCCCCChHHHHHHHHHHHHH
Confidence            999999643          134567899999999999886632    269999999322223345678999999888888


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       368 ~~la  371 (450)
T PRK08261        368 QALA  371 (450)
T ss_pred             HHHH
Confidence            7764

>PRK06484 short chain dehydrogenase; Validated

Probab=99.70  E-value=2.9e-16  Score=136.35  Aligned_cols=140  Identities=18%  Similarity=0.157  Sum_probs=107.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++++++||||+++||.+++++|+++|++|++++|+.+....  .....++.++.+|++|++++.++++       ++|++
T Consensus         4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   83 (520)
T PRK06484          4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDVL   83 (520)
T ss_pred             CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCEE
Confidence            57899999999999999999999999999999987654211  1123467789999999998877665       48999


Q ss_pred             EEccccCC------------CCccchhhhHHHHHHHHHHHHH----cCCC-EEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          126 ISCVGGFG------------SNSYMYKINGTANINAIRAASE----KGVK-RFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       126 i~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~~----~~~~-~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |||||...            ++...+++|+.++..+++++..    .+.+ ++|++||...-.+......|+.+|.+.+.
T Consensus        84 i~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~~~~~~~~~~~Y~asKaal~~  163 (520)
T PRK06484         84 VNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGAGLVALPKRTAYSASKAAVIS  163 (520)
T ss_pred             EECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcccCCCCCCCchHHHHHHHHHH
Confidence            99998631            1245778999999988877743    2333 99999994333334456789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       164 l~~~la  169 (520)
T PRK06484        164 LTRSLA  169 (520)
T ss_pred             HHHHHH
Confidence            888753

>PRK09009 C factor cell-cell signaling protein; Provisional

Probab=99.70  E-value=4.2e-16  Score=121.93  Aligned_cols=135  Identities=20%  Similarity=0.235  Sum_probs=98.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh---cCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL---DGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~~~d~vi~~a~~  131 (202)
                      |+++||||+|+||++++++|+++|  +.|....|+....   ....++.++++|++|+++++++.   .++|++|||||.
T Consensus         1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~Dls~~~~~~~~~~~~~~id~li~~aG~   77 (235)
T PRK09009          1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD---FQHDNVQWHALDVTDEAEIKQLSEQFTQLDWLINCVGM   77 (235)
T ss_pred             CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc---cccCceEEEEecCCCHHHHHHHHHhcCCCCEEEECCcc
Confidence            589999999999999999999985  5666666654332   22357889999999998877654   468999999997


Q ss_pred             CCC----------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccc--c-CcCCcCCcchHHHHHHHHH
Q 028890          132 FGS----------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAAD--F-GVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       132 ~~~----------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~--~-~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ...                +...+.+|+.++..+.+.+..    .+.++++++||..  . .....+...|+.+|.+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~~i~~iss~~~~~~~~~~~~~~~Y~asK~a~~~  157 (235)
T PRK09009         78 LHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESAKFAVISAKVGSISDNRLGGWYSYRASKAALNM  157 (235)
T ss_pred             ccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCceEEEEeecccccccCCCCCcchhhhhHHHHHH
Confidence            531                113567888888877666543    3446899998721  1 1122345689999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       158 ~~~~la  163 (235)
T PRK09009        158 FLKTLS  163 (235)
T ss_pred             HHHHHH
Confidence            988754

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=99.69  E-value=4.5e-16  Score=123.76  Aligned_cols=141  Identities=12%  Similarity=0.041  Sum_probs=103.5

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc-----ccc--cCCCceeEEEccCCCHhhHHHHhc----
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS-----LRD--SWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----~~~--~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      .++++++||||+  ++||++++++|+++|++|++..|+.+..     ...  .....+.++.+|++|++++.++++    
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~   83 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEETFETIKQ   83 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHHHHHHHH
Confidence            357899999986  8999999999999999998876643211     000  011346788999999999887665    


Q ss_pred             ---CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHH
Q 028890          121 ---GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 ---~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                         ++|++|||||...              .+...+++|+.++..+.+++...  ..+++|++||.....+.+....|+.
T Consensus        84 ~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~a  163 (258)
T PRK07370         84 KWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTYLGGVRAIPNYNVMGV  163 (258)
T ss_pred             HcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEeccccccCCcccchhhH
Confidence               4899999999532              12456788999998887776431  1268999999322233345578999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       164 sKaal~~l~~~la  176 (258)
T PRK07370        164 AKAALEASVRYLA  176 (258)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>PRK05599 hypothetical protein; Provisional

Probab=99.69  E-value=8.2e-16  Score=121.43  Aligned_cols=137  Identities=15%  Similarity=0.107  Sum_probs=98.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      |+++||||+++||.+++++|. +|++|++++|+.++...      ......+.++.+|+.|+++++++++       ++|
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id   79 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQELAGEIS   79 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHhcCCCC
Confidence            579999999999999999998 59999999997643211      1112247889999999988877654       489


Q ss_pred             EeEEccccCCCC----------ccchhhhHHHHHHHHHH----HHHcC-CCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFGSN----------SYMYKINGTANINAIRA----ASEKG-VKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~~~----------~~~~~~n~~~~~~~~~~----~~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|||||.....          ...+.+|+.+...+++.    +.+.+ .+++|++||.....+......|+.+|.+.+.
T Consensus        80 ~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~  159 (246)
T PRK05599         80 LAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWRARRANYVYGSTKAGLDA  159 (246)
T ss_pred             EEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEeccccccCCcCCcchhhHHHHHHH
Confidence            999999975321          12345677777655443    44443 3699999994322333455789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       160 ~~~~la  165 (246)
T PRK05599        160 FCQGLA  165 (246)
T ss_pred             HHHHHH
Confidence            888753

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.68  E-value=4.4e-16  Score=123.97  Aligned_cols=140  Identities=10%  Similarity=-0.054  Sum_probs=101.7

Q ss_pred             CCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCC--ccccc--CCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRS--SLRDS--WANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~--~~~~~--~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++|+++||||++  +||.++++.|+++|++|++.+|+...  .....  ......++++|++|+++++++++       +
T Consensus         7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   86 (260)
T PRK06603          7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWGS   86 (260)
T ss_pred             CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            568999999997  89999999999999999988876321  01111  11223467899999999887775       4


Q ss_pred             ccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          122 VTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       122 ~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|++|||||...              .+...+++|+.++..+.+++...  .-+++|++||.....+......|+.+|++
T Consensus        87 iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  166 (260)
T PRK06603         87 FDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTYYGAEKVIPNYNVMGVAKAA  166 (260)
T ss_pred             ccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEecCccccCCCcccchhhHHHH
Confidence            899999998532              12346788999998888765432  12589999993222233445789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       167 l~~l~~~la  175 (260)
T PRK06603        167 LEASVKYLA  175 (260)
T ss_pred             HHHHHHHHH
Confidence            999988764

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=99.68  E-value=5.2e-16  Score=126.86  Aligned_cols=139  Identities=12%  Similarity=0.030  Sum_probs=100.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+++||.+++++|+++| ++|++++|+..+...     ......+.++.+|++|.+++.++++       +
T Consensus         2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~~   81 (314)
T TIGR01289         2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQFVQQFRESGRP   81 (314)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence            46799999999999999999999999 999999987543111     1112467889999999988776653       5


Q ss_pred             ccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcC--CCEEEEEec-cccCc------------
Q 028890          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKG--VKRFVYISA-ADFGV------------  171 (202)
Q Consensus       122 ~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~--~~~~v~~SS-~~~~~------------  171 (202)
                      +|++|||||....           +...+++|+.++..+.+++    ++.+  .++||++|| ..+..            
T Consensus        82 iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~~~~~~~~~~~~~~~~~~  161 (314)
T TIGR01289        82 LDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSITGNTNTLAGNVPPKANL  161 (314)
T ss_pred             CCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecCccccccCCCcCCCcccc
Confidence            8999999996321           1335789999988776654    3332  369999999 33210            


Q ss_pred             --------------------CCcCCcchHHHHHHHHHHHHHh
Q 028890          172 --------------------ANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       172 --------------------~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                                          +..+...|+.||.+...+.+.+
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~l  203 (314)
T TIGR01289       162 GDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVREL  203 (314)
T ss_pred             cccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHH
Confidence                                0013456999999977766654

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.68  E-value=7.3e-16  Score=122.76  Aligned_cols=141  Identities=13%  Similarity=0.049  Sum_probs=99.7

Q ss_pred             CCCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCCCCc--cccc--CCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSS--LRDS--WANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~~--~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||  +++||++++++|+++|++|++..|.....  ....  .......+++|++|+++++++++       
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            45689999997  67999999999999999999887653211  1111  11234678999999999887764       


Q ss_pred             CccEeEEccccCCC---------------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHH
Q 028890          121 GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 ~~d~vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                      ++|++|||||....               +...+++|+.++..+.+++..   .+.+++|++||...-.+.+....|+.+
T Consensus        84 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g~Iv~iss~~~~~~~~~~~~Y~as  163 (261)
T PRK08690         84 GLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNSAIVALSYLGAVRAIPNYNVMGMA  163 (261)
T ss_pred             CCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCcEEEEEcccccccCCCCcccchhH
Confidence            48999999996421               112356788888777665432   122589999983222233455789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+.++
T Consensus       164 Kaal~~l~~~la  175 (261)
T PRK08690        164 KASLEAGIRFTA  175 (261)
T ss_pred             HHHHHHHHHHHH
Confidence            999999888753

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.68  E-value=7.3e-16  Score=120.63  Aligned_cols=140  Identities=19%  Similarity=0.173  Sum_probs=103.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ++++++||||+|+||.++++.|+++|++|++++|++.....    .....++.++.+|+.+++++.++++       ++|
T Consensus         4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id   83 (238)
T PRK05786          4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID   83 (238)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence            56799999999999999999999999999999997643211    0112368899999999988877654       469


Q ss_pred             EeEEccccCCC--------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEecc-ccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          124 AVISCVGGFGS--------NSYMYKINGTANINAIRAASEK--GVKRFVYISAA-DFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       124 ~vi~~a~~~~~--------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      .+||++|....        ....++.|+.++..+++.+.+.  ..+++|++||. ....+..+...|+.+|.+.+.+++.
T Consensus        84 ~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~~~~~~~~Y~~sK~~~~~~~~~  163 (238)
T PRK05786         84 GLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYKASPDQLSYAVAKAGLAKAVEI  163 (238)
T ss_pred             EEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhcccCCCCchHHHHHHHHHHHHHHH
Confidence            99999985431        1334678888888777776542  22589999983 2222334456799999999888776


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       164 ~~  165 (238)
T PRK05786        164 LA  165 (238)
T ss_pred             HH
Confidence            53

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.67  E-value=7.6e-16  Score=122.64  Aligned_cols=140  Identities=11%  Similarity=0.041  Sum_probs=101.3

Q ss_pred             CCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCCC--Ccccc--cCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGR--SSLRD--SWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~~--~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||  +++||.+++++|+++|++|+++.|...  +....  .......++.+|++|+++++++++       +
T Consensus         5 ~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (260)
T PRK06997          5 AGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWDG   84 (260)
T ss_pred             CCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhCC
Confidence            5689999996  689999999999999999998865421  11110  011233568899999998887775       4


Q ss_pred             ccEeEEccccCCC---------------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          122 VTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       122 ~d~vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      +|++|||||....               +...+++|+.++..+.+++...  +.+++|++||.....+......|+.+|+
T Consensus        85 iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~iss~~~~~~~~~~~~Y~asKa  164 (260)
T PRK06997         85 LDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERVVPNYNTMGLAKA  164 (260)
T ss_pred             CcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEeccccccCCCCcchHHHHHH
Confidence            8999999986321               1235788999998888776542  2358999998322233344567999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       165 al~~l~~~la  174 (260)
T PRK06997        165 SLEASVRYLA  174 (260)
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>PRK08303 short chain dehydrogenase; Provisional

Probab=99.67  E-value=1.2e-15  Score=124.29  Aligned_cols=141  Identities=18%  Similarity=0.126  Sum_probs=101.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC---------ccc------ccCCCceeEEEccCCCHhhHHHH
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS---------SLR------DSWANNVIWHQGNLLSSDSWKEA  118 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~---------~~~------~~~~~~~~~~~~D~~~~~~~~~~  118 (202)
                      .++|+++||||+++||.+++++|++.|++|++++|+..+         ...      .....++.++++|+.|+++++++
T Consensus         6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~   85 (305)
T PRK08303          6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRAL   85 (305)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence            467899999999999999999999999999999987421         000      01123577899999999988776


Q ss_pred             hc-------CccEeEEcc-ccC------CC--------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccc--cC
Q 028890          119 LD-------GVTAVISCV-GGF------GS--------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD--FG  170 (202)
Q Consensus       119 ~~-------~~d~vi~~a-~~~------~~--------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~--~~  170 (202)
                      ++       ++|++|||| |..      .+        +...+++|+.++..+.+++.    +.+.++||++||..  +.
T Consensus        86 ~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g~IV~isS~~~~~~  165 (305)
T PRK08303         86 VERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGGLVVEITDGTAEYN  165 (305)
T ss_pred             HHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCcEEEEECCcccccc
Confidence            64       489999999 631      11        12356778888877666653    33346999999832  22


Q ss_pred             c-CCcCCcchHHHHHHHHHHHHHhc
Q 028890          171 V-ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       171 ~-~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      . +......|+.+|.+.+.+.+.++
T Consensus       166 ~~~~~~~~~Y~asKaal~~lt~~La  190 (305)
T PRK08303        166 ATHYRLSVFYDLAKTSVNRLAFSLA  190 (305)
T ss_pred             CcCCCCcchhHHHHHHHHHHHHHHH
Confidence            1 12234579999999999988653

>PRK12320 hypothetical protein; Provisional

Probab=99.67  E-value=7.5e-16  Score=136.14  Aligned_cols=120  Identities=21%  Similarity=0.229  Sum_probs=95.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~  136 (202)
                      |+|+||||+||||++++++|+++|++|++++|.....    ...+++++.+|+.|+. +.++++++|+|||+|+....  
T Consensus         1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~----~~~~ve~v~~Dl~d~~-l~~al~~~D~VIHLAa~~~~--   73 (699)
T PRK12320          1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA----LDPRVDYVCASLRNPV-LQELAGEADAVIHLAPVDTS--   73 (699)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc----ccCCceEEEccCCCHH-HHHHhcCCCEEEEcCccCcc--
Confidence            4899999999999999999999999999999865431    1357899999999985 77888899999999986422  


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          137 YMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       137 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ....+|+.++.+++++|++.++ ++||+||. +|.+    ..|.    .+|.++..+
T Consensus        74 ~~~~vNv~Gt~nLleAA~~~Gv-RiV~~SS~-~G~~----~~~~----~aE~ll~~~  120 (699)
T PRK12320         74 APGGVGITGLAHVANAAARAGA-RLLFVSQA-AGRP----ELYR----QAETLVSTG  120 (699)
T ss_pred             chhhHHHHHHHHHHHHHHHcCC-eEEEEECC-CCCC----cccc----HHHHHHHhc
Confidence            2336899999999999999997 79999984 3322    1232    467766653

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=99.66  E-value=1.6e-15  Score=122.16  Aligned_cols=99  Identities=29%  Similarity=0.379  Sum_probs=83.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh------cC-ccEeEEccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL------DG-VTAVISCVG  130 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~------~~-~d~vi~~a~  130 (202)
                      +|+||||||++|++++++|+++|++|++++|++....    ..+++.+.+|+.|++++.+++      ++ +|.++|+++
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~   76 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAP   76 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCC
Confidence            5899999999999999999999999999999876432    246778889999999999998      57 999999987


Q ss_pred             cCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 028890          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (202)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~  167 (202)
                      ....       ......+++++|++.|+++||++||.
T Consensus        77 ~~~~-------~~~~~~~~i~aa~~~gv~~~V~~Ss~  106 (285)
T TIGR03649        77 PIPD-------LAPPMIKFIDFARSKGVRRFVLLSAS  106 (285)
T ss_pred             CCCC-------hhHHHHHHHHHHHHcCCCEEEEeecc
Confidence            5321       12455688999999999999999983

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane]

Probab=99.66  E-value=1.2e-15  Score=119.48  Aligned_cols=139  Identities=18%  Similarity=0.207  Sum_probs=113.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc---------ccccCCCceeEEEccCCCHhhHHHHhc--Ccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS---------LRDSWANNVIWHQGNLLSSDSWKEALD--GVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~---------~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d  123 (202)
                      ++|+.+|||-||.-|++|++.|++.||+|+.+.|+....         .......++.++.+|++|...+.++++  ++|
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd   80 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD   80 (345)
T ss_pred             CCceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccceeccccccCCceeEEEeccccchHHHHHHHHhcCch
Confidence            367899999999999999999999999999999874331         112234568899999999999999988  589


Q ss_pred             EeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCC--CEEEEEecc-ccCc----------CCcCCcchHHHHH
Q 028890          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAA-DFGV----------ANYLLQGYYEGKV  184 (202)
Q Consensus       124 ~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~--~~~v~~SS~-~~~~----------~~~~~~~Y~~sK~  184 (202)
                      -|+|.|+.++      .+....+++..|+++++++.+..+.  -||...||+ .||.          +-.|.+||+.+|.
T Consensus        81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKl  160 (345)
T COG1089          81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL  160 (345)
T ss_pred             hheeccccccccccccCcceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCccccCCCCCCCCHHHHHHH
Confidence            9999999643      5666778899999999999998764  388888884 4663          3357899999999


Q ss_pred             HHHHHHHHh
Q 028890          185 LSSDVAACQ  193 (202)
Q Consensus       185 ~~E~~~~~~  193 (202)
                      .+-.+...|
T Consensus       161 Ya~W~tvNY  169 (345)
T COG1089         161 YAYWITVNY  169 (345)
T ss_pred             HHHheeeeh
Confidence            999887765

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.66  E-value=1.5e-15  Score=120.67  Aligned_cols=140  Identities=12%  Similarity=0.050  Sum_probs=102.0

Q ss_pred             CCCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCCCCc-cc---ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSS-LR---DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||  +++||.+++++|+++|++|++++|+.... ..   .....++.++.+|+.|+++++++++       
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            35689999999  89999999999999999999998764211 11   1112357789999999998877654       


Q ss_pred             CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||....              +...+++|+.++..+.+++...  ..+++|++|+.. ....+....|+.||+
T Consensus        85 ~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~~~-~~~~~~~~~Y~asKa  163 (256)
T PRK07889         85 GLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDFDA-TVAWPAYDWMGVAKA  163 (256)
T ss_pred             CCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEeecc-cccCCccchhHHHHH
Confidence            48999999996421              1235788999998877776432  125899998732 122233456899999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       164 al~~l~~~la  173 (256)
T PRK07889        164 ALESTNRYLA  173 (256)
T ss_pred             HHHHHHHHHH
Confidence            9999888753

>KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism]

Probab=99.66  E-value=6.1e-16  Score=120.88  Aligned_cols=139  Identities=17%  Similarity=0.221  Sum_probs=111.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC--CCeEEEEecC----CC-CcccccCCCceeEEEccCCCHhhHHHHhc--CccEeE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR--GLTVASLSRS----GR-SSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVI  126 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~----~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi  126 (202)
                      .++++||||.||||++.+..+...  .++.++++.-    .. ......+.++.+++++|+.+...+.-++.  .+|.|+
T Consensus         6 ~~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~~~~l~~~~n~p~ykfv~~di~~~~~~~~~~~~~~id~vi   85 (331)
T KOG0747|consen    6 EKNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSNLKNLEPVRNSPNYKFVEGDIADADLVLYLFETEEIDTVI   85 (331)
T ss_pred             cceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccccchhhhhccCCCceEeeccccchHHHHhhhccCchhhhh
Confidence            379999999999999999999887  4566666532    11 11223446789999999999988877775  589999


Q ss_pred             EccccCC------CCccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcC-----------CcCCcchHHHHHHHH
Q 028890          127 SCVGGFG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVA-----------NYLLQGYYEGKVLSS  187 (202)
Q Consensus       127 ~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~~~-----------~~~~~~Y~~sK~~~E  187 (202)
                      |.|+..+      ++....+.|+.++..++++++.. ++++||++|| .+||..           ..|.++|+++|+++|
T Consensus        86 hfaa~t~vd~s~~~~~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~E~s~~nPtnpyAasKaAaE  165 (331)
T KOG0747|consen   86 HFAAQTHVDRSFGDSFEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVGEASLLNPTNPYAASKAAAE  165 (331)
T ss_pred             hhHhhhhhhhhcCchHHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCccccccccccccCCCCCchHHHHHHHH
Confidence            9999643      45567788999999999999987 5899999999 788843           346789999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .++++|.
T Consensus       166 ~~v~Sy~  172 (331)
T KOG0747|consen  166 MLVRSYG  172 (331)
T ss_pred             HHHHHHh
Confidence            9999974

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=99.66  E-value=1.9e-15  Score=119.00  Aligned_cols=138  Identities=15%  Similarity=0.158  Sum_probs=102.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ++++++|||++|+||.++++.|+++|++|++++|+..+...     .....++.++.+|+.+++++.++++       ++
T Consensus         4 ~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (253)
T PRK08217          4 KDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAANVTDEEDVEATFAQIAEDFGQL   83 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence            56799999999999999999999999999999987643111     1123467889999999888776555       47


Q ss_pred             cEeEEccccCCC-------------------CccchhhhHHHHHHHHHHHH----Hc-CCCEEEEEec-cccCcCCcCCc
Q 028890          123 TAVISCVGGFGS-------------------NSYMYKINGTANINAIRAAS----EK-GVKRFVYISA-ADFGVANYLLQ  177 (202)
Q Consensus       123 d~vi~~a~~~~~-------------------~~~~~~~n~~~~~~~~~~~~----~~-~~~~~v~~SS-~~~~~~~~~~~  177 (202)
                      |+||||+|....                   +...+++|+.++..+.+.+.    +. ..++++++|| ..++  ..+..
T Consensus        84 d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~iv~~ss~~~~~--~~~~~  161 (253)
T PRK08217         84 NGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGVIINISSIARAG--NMGQT  161 (253)
T ss_pred             CEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEccccccC--CCCCc
Confidence            999999995321                   12245788888886665443    22 2347899988 3333  34567


Q ss_pred             chHHHHHHHHHHHHHhc
Q 028890          178 GYYEGKVLSSDVAACQS  194 (202)
Q Consensus       178 ~Y~~sK~~~E~~~~~~~  194 (202)
                      .|+.+|.+.+.+++.++
T Consensus       162 ~Y~~sK~a~~~l~~~la  178 (253)
T PRK08217        162 NYSASKAGVAAMTVTWA  178 (253)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            89999999999988764

>TIGR01500 sepiapter_red sepiapterin reductase

Probab=99.66  E-value=6.2e-16  Score=122.69  Aligned_cols=137  Identities=17%  Similarity=0.119  Sum_probs=100.1

Q ss_pred             eEEEEccCChhHHHHHHHHHH----CCCeEEEEecCCCCccc---cc----CCCceeEEEccCCCHhhHHHHhcC-----
Q 028890           58 KLLVLGGNGFVGSHICREALD----RGLTVASLSRSGRSSLR---DS----WANNVIWHQGNLLSSDSWKEALDG-----  121 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~----~g~~V~~l~r~~~~~~~---~~----~~~~~~~~~~D~~~~~~~~~~~~~-----  121 (202)
                      .++||||+++||.+++++|++    +|++|+++.|+......   ..    ...++.++.+|+.|++++.++++.     
T Consensus         2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~~~~~v~~~~~~~~~~~   81 (256)
T TIGR01500         2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEALRQLKAEIGAERSGLRVVRVSLDLGAEAGLEQLLKALRELP   81 (256)
T ss_pred             EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHHHHHHHHHHhcCCCceEEEEEeccCCHHHHHHHHHHHHhcc
Confidence            689999999999999999997    79999999997643111   00    123678899999999988776642     


Q ss_pred             ------ccEeEEccccCCC-------------CccchhhhHHHHHHHHHHHHH----c-C-CCEEEEEeccccCcCCcCC
Q 028890          122 ------VTAVISCVGGFGS-------------NSYMYKINGTANINAIRAASE----K-G-VKRFVYISAADFGVANYLL  176 (202)
Q Consensus       122 ------~d~vi~~a~~~~~-------------~~~~~~~n~~~~~~~~~~~~~----~-~-~~~~v~~SS~~~~~~~~~~  176 (202)
                            .|++|||||....             +...+++|+.++..+.+.+.+    . + .+++|++||...-.+.+..
T Consensus        82 g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~iv~isS~~~~~~~~~~  161 (256)
T TIGR01500        82 RPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRTVVNISSLCAIQPFKGW  161 (256)
T ss_pred             ccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCEEEEECCHHhCCCCCCc
Confidence                  2689999995321             123678899998877666532    2 2 3589999993222233445


Q ss_pred             cchHHHHHHHHHHHHHhc
Q 028890          177 QGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       177 ~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..|+.+|.+.+.+++.++
T Consensus       162 ~~Y~asKaal~~l~~~la  179 (256)
T TIGR01500       162 ALYCAGKAARDMLFQVLA  179 (256)
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            689999999999988764

This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=99.66  E-value=1.1e-15  Score=119.74  Aligned_cols=129  Identities=26%  Similarity=0.235  Sum_probs=98.5

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-cccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCcc
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSY  137 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~  137 (202)
                      |+|+||||.+|+++++.|++.+++|.++.|+.+... ......+++++.+|+.|++++.++++++|+||++.+...    
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~~----   76 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPSH----   76 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCSC----
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcch----
Confidence            799999999999999999999999999999874322 222335788999999999999999999999999988643    


Q ss_pred             chhhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCc--CCcCCcchHHHHHHHHHHHHHh
Q 028890          138 MYKINGTANINAIRAASEKGVKRFVYISAA-DFGV--ANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       138 ~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~-~~~~--~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                        ........+++++|++.|+++||+.|.. .+..  ...+..++...|...|+.+++.
T Consensus        77 --~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~  133 (233)
T PF05368_consen   77 --PSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRES  133 (233)
T ss_dssp             --CCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHC
T ss_pred             --hhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhc
Confidence              3445667789999999999999965442 2211  1223355677899999988864

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK08862 short chain dehydrogenase; Provisional

Probab=99.65  E-value=3.6e-15  Score=116.57  Aligned_cols=138  Identities=13%  Similarity=0.063  Sum_probs=99.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc--------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD--------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~--------  120 (202)
                      .++++++||||+++||++++++|+++|++|+++.|+.+....     .....++..+.+|+.|+++++++++        
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHLFDAIEQQFNR   82 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            356899999999999999999999999999999987653211     1113457788899999998876653        


Q ss_pred             CccEeEEccccCCC-----------CccchhhhHHHHHHHHHH----HHHcC-CCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRA----ASEKG-VKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~----~~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||....           +...+.+|+.++..+.+.    +.+.+ .+++|++||.. +  ......|+.+|.
T Consensus        83 ~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~-~--~~~~~~Y~asKa  159 (227)
T PRK08862         83 APDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISHD-D--HQDLTGVESSNA  159 (227)
T ss_pred             CCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecCC-C--CCCcchhHHHHH
Confidence            58999999974211           122445677776655544    33333 46999999832 1  123568999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+..+
T Consensus       160 al~~~~~~la  169 (227)
T PRK08862        160 LVSGFTHSWA  169 (227)
T ss_pred             HHHHHHHHHH
Confidence            9999888753

>TIGR01777 yfcH conserved hypothetical protein TIGR01777

Probab=99.64  E-value=2.3e-15  Score=121.03  Aligned_cols=128  Identities=21%  Similarity=0.166  Sum_probs=86.9

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC---C
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS---N  135 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~---~  135 (202)
                      |+||||+||||++++++|+++|++|++++|+....... ....    ..|+.. +.+.+.+.++|+|||+|+....   +
T Consensus         1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-~~~~----~~~~~~-~~~~~~~~~~D~Vvh~a~~~~~~~~~   74 (292)
T TIGR01777         1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANT-KWEG----YKPWAP-LAESEALEGADAVINLAGEPIADKRW   74 (292)
T ss_pred             CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcc-ccee----eecccc-cchhhhcCCCCEEEECCCCCcccccC
Confidence            68999999999999999999999999999987553211 1011    112222 4455677899999999996431   2


Q ss_pred             -----ccchhhhHHHHHHHHHHHHHcCCC--EEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHH
Q 028890          136 -----SYMYKINGTANINAIRAASEKGVK--RFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       136 -----~~~~~~n~~~~~~~~~~~~~~~~~--~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~  192 (202)
                           ...++.|+.++.+++++|++.+++  +||+.|+ ..|+...          .+.+.|+..+...|..+..
T Consensus        75 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~~~~~~~~~~~~~~~~e~~~~~  149 (292)
T TIGR01777        75 TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEEDSPAGDDFLAELCRDWEEAAQA  149 (292)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCcccCCCCCChHHHHHHHHHHHhhh
Confidence                 235678999999999999999874  4555555 3465321          1112345556666766553

This model represents a clade of proteins of unknown function including the E. coli yfcH protein.

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=99.63  E-value=9.7e-15  Score=116.72  Aligned_cols=142  Identities=15%  Similarity=0.059  Sum_probs=105.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--------ccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      ...+|+++|||++.+||++++++|.+.|++|++.+|+.+....        .....++..+.+|+++++..+++++    
T Consensus         5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~l~~~~~~   84 (270)
T KOG0725|consen    5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVSKEVDVEKLVEFAVE   84 (270)
T ss_pred             cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999998764111        1113468899999998876665543    


Q ss_pred             ----CccEeEEccccCC-----------CCccchhhhHHH-HHHHHHHH----HHcCCCEEEEEeccccCcC-CcCCcch
Q 028890          121 ----GVTAVISCVGGFG-----------SNSYMYKINGTA-NINAIRAA----SEKGVKRFVYISAADFGVA-NYLLQGY  179 (202)
Q Consensus       121 ----~~d~vi~~a~~~~-----------~~~~~~~~n~~~-~~~~~~~~----~~~~~~~~v~~SS~~~~~~-~~~~~~Y  179 (202)
                          ++|++|+|||...           .++..+++|+.| ...+.+++    ++.+...++++||..+... ......|
T Consensus        85 ~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg~I~~~ss~~~~~~~~~~~~~Y  164 (270)
T KOG0725|consen   85 KFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVAY  164 (270)
T ss_pred             HhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCcccc
Confidence                5899999999543           235677899995 44444444    3334568888888433323 2222789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.+++.+..+
T Consensus       165 ~~sK~al~~ltr~lA  179 (270)
T KOG0725|consen  165 GVSKAALLQLTRSLA  179 (270)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999999998754

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.63  E-value=9.9e-15  Score=118.62  Aligned_cols=141  Identities=18%  Similarity=0.110  Sum_probs=104.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------c-ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------R-DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~-~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ...+++++||||+++||.+++++|+.+|++|+...|+.....      . ......+.++++|+++.+++.++.+     
T Consensus        32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~  111 (314)
T KOG1208|consen   32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK  111 (314)
T ss_pred             cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence            446689999999999999999999999999999999964311      1 1224578899999999998887665     


Q ss_pred             --CccEeEEccccCCC--------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcC------C------c
Q 028890          121 --GVTAVISCVGGFGS--------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVA------N------Y  174 (202)
Q Consensus       121 --~~d~vi~~a~~~~~--------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~------~------~  174 (202)
                        ..|++|+|||.+..        .+..+.+|+.|+..+.+.    ++.....|+|++||..++..      .      .
T Consensus       112 ~~~ldvLInNAGV~~~~~~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~RIV~vsS~~~~~~~~~~~l~~~~~~~~  191 (314)
T KOG1208|consen  112 EGPLDVLINNAGVMAPPFSLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKLY  191 (314)
T ss_pred             CCCccEEEeCcccccCCcccCccchhheehhhhHHHHHHHHHHHHHHhhCCCCCEEEEcCccccCccchhhccchhccCc
Confidence              47999999997542        245778999999866554    45554479999999543110      0      1


Q ss_pred             C-CcchHHHHHHHHHHHHHh
Q 028890          175 L-LQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       175 ~-~~~Y~~sK~~~E~~~~~~  193 (202)
                      . ...|+.||.+...+..++
T Consensus       192 ~~~~~Y~~SKla~~l~~~eL  211 (314)
T KOG1208|consen  192 SSDAAYALSKLANVLLANEL  211 (314)
T ss_pred             cchhHHHHhHHHHHHHHHHH
Confidence            1 123999998887665554

>KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion]

Probab=99.63  E-value=5.4e-15  Score=115.84  Aligned_cols=137  Identities=20%  Similarity=0.215  Sum_probs=114.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc----CCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS----WANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~----~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .+-.+-|.|||||+|++++++|.+.|.+|++-.|..+....+.    .-+.+.++..|+.|+++|.++++..++||+..|
T Consensus        60 sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~r~lkvmGdLGQvl~~~fd~~DedSIr~vvk~sNVVINLIG  139 (391)
T KOG2865|consen   60 SGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDPRHLKVMGDLGQVLFMKFDLRDEDSIRAVVKHSNVVINLIG  139 (391)
T ss_pred             cceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccchhheeecccccceeeeccCCCCHHHHHHHHHhCcEEEEeec
Confidence            4567899999999999999999999999999998765533222    134688999999999999999999999999999


Q ss_pred             cC--CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          131 GF--GSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       131 ~~--~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      --  ..+-++.++|+.+...+++.|++.|+.|||++|+.  +..-...+-|-.+|+++|..++..
T Consensus       140 rd~eTknf~f~Dvn~~~aerlAricke~GVerfIhvS~L--ganv~s~Sr~LrsK~~gE~aVrda  202 (391)
T KOG2865|consen  140 RDYETKNFSFEDVNVHIAERLARICKEAGVERFIHVSCL--GANVKSPSRMLRSKAAGEEAVRDA  202 (391)
T ss_pred             cccccCCcccccccchHHHHHHHHHHhhChhheeehhhc--cccccChHHHHHhhhhhHHHHHhh
Confidence            42  23456789999999999999999999999999984  333444567999999999998863

>KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]

Probab=99.62  E-value=7.8e-15  Score=116.58  Aligned_cols=140  Identities=19%  Similarity=0.169  Sum_probs=109.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC--cccccC-CCceeEEEccCCCHhhHHHHhc---------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS--SLRDSW-ANNVIWHQGNLLSSDSWKEALD---------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~--~~~~~~-~~~~~~~~~D~~~~~~~~~~~~---------  120 (202)
                      +...+.|+|||+..++|..++++|.++|+.|++-.-.++.  ...... .++...++.|++++++++++.+         
T Consensus        26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~gae~L~~~~~s~rl~t~~LDVT~~esi~~a~~~V~~~l~~~  105 (322)
T KOG1610|consen   26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKSPRLRTLQLDVTKPESVKEAAQWVKKHLGED  105 (322)
T ss_pred             ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchHHHHhhhhcCCcceeEeeccCCHHHHHHHHHHHHHhcccc
Confidence            3467789999999999999999999999999887644433  122222 5788889999999999998876         


Q ss_pred             CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +.=.+|||||...           +....+++|..|+..+.+++    +++. +|+|++||.....+.+...+|+.||++
T Consensus       106 gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar-GRvVnvsS~~GR~~~p~~g~Y~~SK~a  184 (322)
T KOG1610|consen  106 GLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGRVALPALGPYCVSKFA  184 (322)
T ss_pred             cceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc-CeEEEecccccCccCcccccchhhHHH
Confidence            3569999999542           22457799999998776665    4443 699999996556666677899999999


Q ss_pred             HHHHHHHh
Q 028890          186 SSDVAACQ  193 (202)
Q Consensus       186 ~E~~~~~~  193 (202)
                      +|.+....
T Consensus       185 Veaf~D~l  192 (322)
T KOG1610|consen  185 VEAFSDSL  192 (322)
T ss_pred             HHHHHHHH
Confidence            99876653

>PLN00015 protochlorophyllide reductase

Probab=99.61  E-value=6.8e-15  Score=119.94  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=81.8

Q ss_pred             EEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCccc---c--cCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           60 LVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR---D--SWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        60 lVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~---~--~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      +||||+++||.+++++|+++| ++|+++.|+......   .  ....++.++.+|+.|.++++++++       ++|++|
T Consensus         1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~~iD~lI   80 (308)
T PLN00015          1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKAERAAKSAGMPKDSYTVMHLDLASLDSVRQFVDNFRRSGRPLDVLV   80 (308)
T ss_pred             CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHhcCCCCCEEE
Confidence            599999999999999999999 999999987543110   1  112467889999999998877664       479999


Q ss_pred             EccccCCC-----------CccchhhhHHHHHHHHHHH----HHcC--CCEEEEEecc
Q 028890          127 SCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKG--VKRFVYISAA  167 (202)
Q Consensus       127 ~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~--~~~~v~~SS~  167 (202)
                      ||||....           +...+++|+.++..+.+.+    ++.+  .+++|++||.
T Consensus        81 nnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g~IV~vsS~  138 (308)
T PLN00015         81 CNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSKRLIIVGSI  138 (308)
T ss_pred             ECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCCEEEEEecc
Confidence            99996421           1346789999988776654    3443  4699999993

>COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=99.60  E-value=1.7e-14  Score=113.81  Aligned_cols=140  Identities=16%  Similarity=0.124  Sum_probs=103.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc----ccccCC----CceeEEEccCCC-HhhHHHHhc----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDSWA----NNVIWHQGNLLS-SDSWKEALD----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~----~~~~~~----~~~~~~~~D~~~-~~~~~~~~~----  120 (202)
                      .++++++||||+++||.++++.|+++|++|+++.|+....    ......    ..+.+..+|+++ .+++..+++    
T Consensus         3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~~v~~~~~~~~~   82 (251)
T COG1028           3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAAAVAADVSDDEESVEALVAAAEE   82 (251)
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchhhHHHHHHHHHhcCCCcEEEEEecCCCCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999988888775431    111112    367788899998 887766554    


Q ss_pred             ---CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCCcC-CcchHHHHH
Q 028890          121 ---GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVANYL-LQGYYEGKV  184 (202)
Q Consensus       121 ---~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~~~~-~~~Y~~sK~  184 (202)
                         ++|++|+|||...           .+...+.+|+.+...+.+++.... .+++|++||.... ...+ ...|+.||+
T Consensus        83 ~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~-~~~~~~~~Y~~sK~  161 (251)
T COG1028          83 EFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL-GGPPGQAAYAASKA  161 (251)
T ss_pred             HcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc-CCCCCcchHHHHHH
Confidence               4899999999642           124577889998888777443211 1199999994333 4444 489999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.+.
T Consensus       162 al~~~~~~l~  171 (251)
T COG1028         162 ALIGLTKALA  171 (251)
T ss_pred             HHHHHHHHHH
Confidence            9998888764

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=99.60  E-value=1.8e-14  Score=116.98  Aligned_cols=140  Identities=6%  Similarity=-0.055  Sum_probs=95.9

Q ss_pred             CCCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCCCCc------ccc--------cCC----CceeEEEccC--CC
Q 028890           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSS------LRD--------SWA----NNVIWHQGNL--LS  111 (202)
Q Consensus        54 ~~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------~~~--------~~~----~~~~~~~~D~--~~  111 (202)
                      .++|+++||||  +++||.++++.|.++|++|++ .|+.+..      ...        ...    .....+.+|+  .+
T Consensus         7 l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~   85 (303)
T PLN02730          7 LRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDT   85 (303)
T ss_pred             CCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhccccchhhhcccccccCcCeeeecceecCc
Confidence            57899999999  799999999999999999988 5542210      000        000    1145778888  33


Q ss_pred             Hh------------------hHHHHhc-------CccEeEEccccC----C--------CCccchhhhHHHHHHHHHHHH
Q 028890          112 SD------------------SWKEALD-------GVTAVISCVGGF----G--------SNSYMYKINGTANINAIRAAS  154 (202)
Q Consensus       112 ~~------------------~~~~~~~-------~~d~vi~~a~~~----~--------~~~~~~~~n~~~~~~~~~~~~  154 (202)
                      ++                  +++++++       ++|++|||||..    .        .+...+++|+.++..+.+++.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~~~~l~~~~~  165 (303)
T PLN02730         86 PEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYSFVSLLQHFG  165 (303)
T ss_pred             cccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHH
Confidence            32                  5555544       489999999632    1        234578999999998877764


Q ss_pred             Hc--CCCEEEEEeccccCcCCc-CCcchHHHHHHHHHHHHHhc
Q 028890          155 EK--GVKRFVYISAADFGVANY-LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       155 ~~--~~~~~v~~SS~~~~~~~~-~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..  .-+++|++||.....+.+ ....|+.+|.+.+.+.+.++
T Consensus       166 p~m~~~G~II~isS~a~~~~~p~~~~~Y~asKaAl~~l~~~la  208 (303)
T PLN02730        166 PIMNPGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLA  208 (303)
T ss_pred             HHHhcCCEEEEEechhhcCCCCCCchhhHHHHHHHHHHHHHHH
Confidence            42  126999999932112222 23479999999999998864

>KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only]

Probab=99.59  E-value=1.6e-14  Score=109.76  Aligned_cols=139  Identities=19%  Similarity=0.167  Sum_probs=101.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-CCeEEEE-ecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc--------
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD--------  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l-~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~--------  120 (202)
                      ++.++||||+++||.-|+++|++. |-++++. .|++++...     ...++++++++.|+++.++++++.+        
T Consensus         3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a~~~l~~k~~~d~rvHii~Ldvt~deS~~~~~~~V~~iVg~   82 (249)
T KOG1611|consen    3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKAATELALKSKSDSRVHIIQLDVTCDESIDNFVQEVEKIVGS   82 (249)
T ss_pred             CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHhhHHHHHhhccCCceEEEEEecccHHHHHHHHHHHHhhccc
Confidence            456999999999999999999987 5565554 454544211     1236799999999999888877664        


Q ss_pred             -CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCC-----------CEEEEEecc---ccC
Q 028890          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGV-----------KRFVYISAA---DFG  170 (202)
Q Consensus       121 -~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~-----------~~~v~~SS~---~~~  170 (202)
                       ++|++|+|||....           +...+++|..++..+.+++    ++...           ..+|++||.   ..+
T Consensus        83 ~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~raaIinisS~~~s~~~  162 (249)
T KOG1611|consen   83 DGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGG  162 (249)
T ss_pred             CCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCcccccceeEEEeeccccccCC
Confidence             57999999996431           2357899988887655544    22222           279999993   233


Q ss_pred             cCCcCCcchHHHHHHHHHHHHHhc
Q 028890          171 VANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       171 ~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..+.+...|.+||.+...+.++.+
T Consensus       163 ~~~~~~~AYrmSKaAlN~f~ksls  186 (249)
T KOG1611|consen  163 FRPGGLSAYRMSKAALNMFAKSLS  186 (249)
T ss_pred             CCCcchhhhHhhHHHHHHHHHHhh
Confidence            455667889999999999988864

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=99.59  E-value=1.5e-14  Score=107.61  Aligned_cols=132  Identities=15%  Similarity=0.099  Sum_probs=102.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      +.+..+||||+.+||+++++.|.+.|++|.+.+++......    ......-..+.||++++++++..++       .++
T Consensus        13 ~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k~~g~ps   92 (256)
T KOG1200|consen   13 MSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEKSLGTPS   92 (256)
T ss_pred             hcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHHhcCCCc
Confidence            56789999999999999999999999999999887543211    1111355678999999988777555       489


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHHHHc----C--CCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----G--VKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~----~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++++|||...          +|++.+.+|+.|++.+-+++.+.    +  .-++|.+||.+.-..+...+.|+++|.-.
T Consensus        93 vlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSIVGkiGN~GQtnYAAsK~Gv  171 (256)
T KOG1200|consen   93 VLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASKGGV  171 (256)
T ss_pred             EEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhhhcccccccchhhhhhcCce
Confidence            9999999754          57888999999999877776442    2  23999999976666777788899988543

>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]

Probab=99.58  E-value=4.5e-14  Score=112.51  Aligned_cols=131  Identities=27%  Similarity=0.306  Sum_probs=104.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~  136 (202)
                      ++|+||||||++|++++++|+++|++|+++.|++.......  ..+++...|+.+++.+...++++|.++++.+... +.
T Consensus         1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~--~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~~~~-~~   77 (275)
T COG0702           1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA--GGVEVVLGDLRDPKSLVAGAKGVDGVLLISGLLD-GS   77 (275)
T ss_pred             CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc--CCcEEEEeccCCHhHHHHHhccccEEEEEecccc-cc
Confidence            58999999999999999999999999999999977643333  7899999999999999999999999999998765 33


Q ss_pred             c-chhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          137 Y-MYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       137 ~-~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      . ..........+..+.+. .++++++++|.  .+........|..+|...|.++.+.
T Consensus        78 ~~~~~~~~~~~~~~a~~a~-~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~e~~l~~s  132 (275)
T COG0702          78 DAFRAVQVTAVVRAAEAAG-AGVKHGVSLSV--LGADAASPSALARAKAAVEAALRSS  132 (275)
T ss_pred             cchhHHHHHHHHHHHHHhc-CCceEEEEecc--CCCCCCCccHHHHHHHHHHHHHHhc
Confidence            3 44455555555454444 44678888877  3444456688999999999998863

>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.58  E-value=5.9e-14  Score=116.39  Aligned_cols=146  Identities=22%  Similarity=0.236  Sum_probs=103.5

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC----CCceeEEEccCCCHhh-HHHHhc----Cc
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW----ANNVIWHQGNLLSSDS-WKEALD----GV  122 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~----~~~~~~~~~D~~~~~~-~~~~~~----~~  122 (202)
                      .+.+.++|+|+||||.+|+-+++.|+++|+.|+++.|+..+......    ......+..|...+.+ +..+..    ..
T Consensus        75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~~~~~d~~~~~v~~~~~~~~d~~~~~~~~~~~~~  154 (411)
T KOG1203|consen   75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVDLGLQNVEADVVTAIDILKKLVEAVPKGV  154 (411)
T ss_pred             CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhcccccccccceeeeccccccchhhhhhhhccccc
Confidence            34467799999999999999999999999999999998765433221    3345555555544332 333333    34


Q ss_pred             cEeEEccccCCCC---ccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcch------HHHHHHHHHHHHHh
Q 028890          123 TAVISCVGGFGSN---SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGY------YEGKVLSSDVAACQ  193 (202)
Q Consensus       123 d~vi~~a~~~~~~---~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y------~~sK~~~E~~~~~~  193 (202)
                      .+++-|+|.....   ..-+.++..|+.|++++|+..|++|++++|+........+.+.+      ..+|..+|..++ .
T Consensus       155 ~~v~~~~ggrp~~ed~~~p~~VD~~g~knlvdA~~~aGvk~~vlv~si~~~~~~~~~~~~~~~~~~~~~k~~~e~~~~-~  233 (411)
T KOG1203|consen  155 VIVIKGAGGRPEEEDIVTPEKVDYEGTKNLVDACKKAGVKRVVLVGSIGGTKFNQPPNILLLNGLVLKAKLKAEKFLQ-D  233 (411)
T ss_pred             eeEEecccCCCCcccCCCcceecHHHHHHHHHHHHHhCCceEEEEEeecCcccCCCchhhhhhhhhhHHHHhHHHHHH-h
Confidence            5777777765433   35567999999999999999999999999984333333333444      488999999888 4


Q ss_pred             cccCC
Q 028890          194 SVLGS  198 (202)
Q Consensus       194 ~~l~~  198 (202)
                      ++++.
T Consensus       234 Sgl~y  238 (411)
T KOG1203|consen  234 SGLPY  238 (411)
T ss_pred             cCCCc
Confidence            44443

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=99.57  E-value=2.7e-14  Score=107.03  Aligned_cols=139  Identities=15%  Similarity=0.104  Sum_probs=102.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ..+.+|+||||+.+||..++++|.+.|-+|+++.|+.....+ ....+.+.-..||+.|.++..++++       ..+++
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            356799999999999999999999999999999998754221 2234678889999999998777665       37999


Q ss_pred             EEccccCCC------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          126 ISCVGGFGS------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       126 i~~a~~~~~------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      |+|||...+            ....+.+|+.++.++..++..    +.-.-+|.+||+-.-.+......|+.+|++.--+
T Consensus        83 iNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSGLafvPm~~~PvYcaTKAaiHsy  162 (245)
T COG3967          83 INNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSY  162 (245)
T ss_pred             eecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccccccCcccccccchhhHHHHHHH
Confidence            999996431            123557889999887776643    3345899999932223333344699999988655


Q ss_pred             HHH
Q 028890          190 AAC  192 (202)
Q Consensus       190 ~~~  192 (202)
                      ..+
T Consensus       163 t~a  165 (245)
T COG3967         163 TLA  165 (245)
T ss_pred             HHH
Confidence            433

>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.56  E-value=1.2e-14  Score=109.52  Aligned_cols=139  Identities=15%  Similarity=0.068  Sum_probs=105.1

Q ss_pred             CCCeEEEEcc-CChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--------CccEe
Q 028890           55 PSEKLLVLGG-NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa-~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--------~~d~v  125 (202)
                      ..++|+|||+ .|+||.+|++++.++|+.|+++.|+.+...+.....++...+.|+++++++.....        ..|++
T Consensus         6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~~~~gl~~~kLDV~~~~~V~~v~~evr~~~~Gkld~L   85 (289)
T KOG1209|consen    6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFGLKPYKLDVSKPEEVVTVSGEVRANPDGKLDLL   85 (289)
T ss_pred             CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHHHhhCCeeEEeccCChHHHHHHHHHHhhCCCCceEEE
Confidence            4578888875 59999999999999999999999998775444445789999999999998877554        27999


Q ss_pred             EEccccCC----------CCccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          126 ISCVGGFG----------SNSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       126 i~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ++|||..-          .-+..+++|+.|+.+.-++....   ..+.+|++.|...-.+-+..+.|.+||++.-.+.+.
T Consensus        86 ~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~vpfpf~~iYsAsKAAihay~~t  165 (289)
T KOG1209|consen   86 YNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGVVPFPFGSIYSASKAAIHAYART  165 (289)
T ss_pred             EcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEEeccchhhhhhHHHHHHHHhhhh
Confidence            99999532          11457899999988776665421   235899999932222333346799999998887765


Q ss_pred             h
Q 028890          193 Q  193 (202)
Q Consensus       193 ~  193 (202)
                      .
T Consensus       166 L  166 (289)
T KOG1209|consen  166 L  166 (289)
T ss_pred             c
Confidence            4

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=99.56  E-value=1.1e-13  Score=102.09  Aligned_cols=127  Identities=24%  Similarity=0.314  Sum_probs=99.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC-CC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-SN  135 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~-~~  135 (202)
                      |||.|+||+|.+|++++++.+++||+|++++|++.+....   .++.+++.|+.|++++.+.+.+.|+||..-+... ++
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~~   77 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASDN   77 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEeccCCCCCh
Confidence            6899999999999999999999999999999998764321   6788999999999999999999999999887652 22


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCEEEEEeccc----------cCcCCcCCcchHHHHHHHHHH
Q 028890          136 SYMYKINGTANINAIRAASEKGVKRFVYISAAD----------FGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~----------~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +.   ........+++..+..++.|++.+..++          ...+..|...|..++..+|.+
T Consensus        78 ~~---~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~ey~~~A~~~ae~L  138 (211)
T COG2910          78 DE---LHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAEYKPEALAQAEFL  138 (211)
T ss_pred             hH---HHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchhHHHHHHHHHHHH
Confidence            22   2223355678888888999999998731          123444555678888888843

>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]

Probab=99.55  E-value=1.5e-14  Score=110.00  Aligned_cols=140  Identities=19%  Similarity=0.196  Sum_probs=104.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----ccccC-CCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----LRDSW-ANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----~~~~~-~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|++++||+.|+||.++.++|+++|..+.+++.+.+..     .+... ...+.|+++|+.+..+++++++       
T Consensus         3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~En~~a~akL~ai~p~~~v~F~~~DVt~~~~~~~~f~ki~~~fg   82 (261)
T KOG4169|consen    3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAKLQAINPSVSVIFIKCDVTNRGDLEAAFDKILATFG   82 (261)
T ss_pred             ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhhCHHHHHHHhccCCCceEEEEEeccccHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999999887777654431     11122 2478899999999888888776       


Q ss_pred             CccEeEEccccCC--CCccchhhhHHHHH----HHHHHHHH-cC--CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          121 GVTAVISCVGGFG--SNSYMYKINGTANI----NAIRAASE-KG--VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       121 ~~d~vi~~a~~~~--~~~~~~~~n~~~~~----~~~~~~~~-~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      .+|++|++||...  +++..+.+|+.|..    ..++.+.+ .|  .+-+|.+||...-.+.+....|++||+..-.+.+
T Consensus        83 ~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv~GL~P~p~~pVY~AsKaGVvgFTR  162 (261)
T KOG4169|consen   83 TIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTR  162 (261)
T ss_pred             ceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccccccCccccchhhhhcccceeeeeh
Confidence            4799999999875  46677888877665    44555543 32  3479999984333344445679999998877777


Q ss_pred             Hh
Q 028890          192 CQ  193 (202)
Q Consensus       192 ~~  193 (202)
                      +.
T Consensus       163 Sl  164 (261)
T KOG4169|consen  163 SL  164 (261)
T ss_pred             hh
Confidence            64

>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain

Probab=99.55  E-value=8.6e-14  Score=105.12  Aligned_cols=134  Identities=21%  Similarity=0.249  Sum_probs=97.6

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCC-C-ccc------ccCCCceeEEEccCCCHhhHHHHhcC-------
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR-S-SLR------DSWANNVIWHQGNLLSSDSWKEALDG-------  121 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~-~-~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~-------  121 (202)
                      +++||||.|+||..+++.|.+++. +++++.|+.. . ...      .....++.++.+|++|++++.++++.       
T Consensus         2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~~~~~~~~   81 (181)
T PF08659_consen    2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQLRQRFGP   81 (181)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHTSHTTSS-
T ss_pred             EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHHHHhccCC
Confidence            689999999999999999999976 8899999832 1 111      12245789999999999999998863       


Q ss_pred             ccEeEEccccCCCC----------ccchhhhHHHHHHHHHHHHHcCCCEEEEEecc--ccCcCCcCCcchHHHHHHHHHH
Q 028890          122 VTAVISCVGGFGSN----------SYMYKINGTANINAIRAASEKGVKRFVYISAA--DFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       122 ~d~vi~~a~~~~~~----------~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~--~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++.|||+||...+.          ...+...+.|..++.++.....++.||++||.  .+|.  .....|+.+....+.+
T Consensus        82 i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~~~i~~SSis~~~G~--~gq~~YaaAN~~lda~  159 (181)
T PF08659_consen   82 IDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLDFFILFSSISSLLGG--PGQSAYAAANAFLDAL  159 (181)
T ss_dssp             EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTSEEEEEEEHHHHTT---TTBHHHHHHHHHHHHH
T ss_pred             cceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCCeEEEECChhHhccC--cchHhHHHHHHHHHHH
Confidence            68999999975421          23456678999999999988889999999993  3443  3458899999999988


Q ss_pred             HHHh
Q 028890          190 AACQ  193 (202)
Q Consensus       190 ~~~~  193 (202)
                      .+..
T Consensus       160 a~~~  163 (181)
T PF08659_consen  160 ARQR  163 (181)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7754

It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=99.51  E-value=1.6e-13  Score=135.07  Aligned_cols=140  Identities=16%  Similarity=0.115  Sum_probs=108.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCc----------------------------------------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSS----------------------------------------   93 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~----------------------------------------   93 (202)
                      ++++++||||+|+||..++++|+++ |++|+++.|+....                                        
T Consensus      1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813      1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence            5789999999999999999999998 69999999982100                                        


Q ss_pred             ----------cc--ccCCCceeEEEccCCCHhhHHHHhc------CccEeEEccccCC----------CCccchhhhHHH
Q 028890           94 ----------LR--DSWANNVIWHQGNLLSSDSWKEALD------GVTAVISCVGGFG----------SNSYMYKINGTA  145 (202)
Q Consensus        94 ----------~~--~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~vi~~a~~~~----------~~~~~~~~n~~~  145 (202)
                                ..  ......+.++.+|++|.+++.++++      ++|.||||||...          .+...+++|+.|
T Consensus      2076 ~~~~~ei~~~la~l~~~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~G 2155 (2582)
T TIGR02813      2076 VLSSLEIAQALAAFKAAGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVDG 2155 (2582)
T ss_pred             cchhHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHHH
Confidence                      00  0112457889999999998887765      4899999999643          234578999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          146 NINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       146 ~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ++++++++.....++||++||...-........|+.+|.+.+.+.+.+.
T Consensus      2156 ~~~Ll~al~~~~~~~IV~~SSvag~~G~~gqs~YaaAkaaL~~la~~la 2204 (2582)
T TIGR02813      2156 LLSLLAALNAENIKLLALFSSAAGFYGNTGQSDYAMSNDILNKAALQLK 2204 (2582)
T ss_pred             HHHHHHHHHHhCCCeEEEEechhhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence            9999999988777899999993221223455789999999988877654

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.48  E-value=8.8e-14  Score=101.84  Aligned_cols=141  Identities=16%  Similarity=0.124  Sum_probs=111.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcC---ccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDG---VTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~---~d~vi~~  128 (202)
                      ..++.|++||+.-+||+.++++|.+.|.+|+++.|++.+...  ...+.-+..+.+|+.+.+.+.+++..   +|.+++|
T Consensus         5 laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~~I~Pi~~Dls~wea~~~~l~~v~pidgLVNN   84 (245)
T KOG1207|consen    5 LAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPSLIIPIVGDLSAWEALFKLLVPVFPIDGLVNN   84 (245)
T ss_pred             ccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCcceeeeEecccHHHHHHHhhcccCchhhhhcc
Confidence            468899999999999999999999999999999998765211  22334589999999999988887764   7999999


Q ss_pred             cccCC----------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          129 VGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       129 a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ||..-          +.+..|++|+.+..++.+...+    .+ .+.++.+||-....+-...+.|+.+|.+.+.+.+..
T Consensus        85 AgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~R~~~nHtvYcatKaALDmlTk~l  164 (245)
T KOG1207|consen   85 AGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCATKAALDMLTKCL  164 (245)
T ss_pred             chhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcccccCCceEEeecHHHHHHHHHHH
Confidence            99532          3466889999998887777432    33 347999999433445556789999999999998886


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      +
T Consensus       165 A  165 (245)
T KOG1207|consen  165 A  165 (245)
T ss_pred             H
Confidence            4

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=99.47  E-value=6.6e-13  Score=107.80  Aligned_cols=141  Identities=7%  Similarity=-0.035  Sum_probs=90.9

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCC---------CCcc---c-c-cCCC-----ceeEEEccCCCH
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSG---------RSSL---R-D-SWAN-----NVIWHQGNLLSS  112 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~---------~~~~---~-~-~~~~-----~~~~~~~D~~~~  112 (202)
                      .++|+++|||++  .+||++++++|.++|++|++.++.+         ....   . . ....     ++..+.+|+.++
T Consensus         6 ~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~   85 (299)
T PRK06300          6 LTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMDASFDTP   85 (299)
T ss_pred             CCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhhhhcCCC
Confidence            478899999995  9999999999999999999876531         0000   0 0 0000     111122343333


Q ss_pred             h------------------hHHHHhc-------CccEeEEccccCC------------CCccchhhhHHHHHHHHHHHHH
Q 028890          113 D------------------SWKEALD-------GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE  155 (202)
Q Consensus       113 ~------------------~~~~~~~-------~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~~  155 (202)
                      +                  ++.++++       ++|++|||||...            ++...+++|+.++.++.+++..
T Consensus        86 ~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~~p  165 (299)
T PRK06300         86 EDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHFGP  165 (299)
T ss_pred             EEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2                  2444333       5899999997421            1245678999999988887754


Q ss_pred             c--CCCEEEEEeccccCcCCcCC-cchHHHHHHHHHHHHHhc
Q 028890          156 K--GVKRFVYISAADFGVANYLL-QGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       156 ~--~~~~~v~~SS~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~  194 (202)
                      .  .-+++|++||.....+.+.. ..|+.+|.+.+.+.+.++
T Consensus       166 ~m~~~G~ii~iss~~~~~~~p~~~~~Y~asKaAl~~lt~~la  207 (299)
T PRK06300        166 IMNPGGSTISLTYLASMRAVPGYGGGMSSAKAALESDTKVLA  207 (299)
T ss_pred             HhhcCCeEEEEeehhhcCcCCCccHHHHHHHHHHHHHHHHHH
Confidence            2  12589999883211222222 379999999999988765

>KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms]

Probab=99.47  E-value=7.2e-13  Score=97.24  Aligned_cols=136  Identities=19%  Similarity=0.178  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+++..+|.||||-.|+.+++++++++.  +|+++.|+....  ......+.....|....+++...++++|+.|.|.|.
T Consensus        16 mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d--~at~k~v~q~~vDf~Kl~~~a~~~qg~dV~FcaLgT   93 (238)
T KOG4039|consen   16 MQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD--PATDKVVAQVEVDFSKLSQLATNEQGPDVLFCALGT   93 (238)
T ss_pred             hhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC--ccccceeeeEEechHHHHHHHhhhcCCceEEEeecc
Confidence            4678999999999999999999999984  999999885332  122356677788998888888899999999999996


Q ss_pred             CC---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          132 FG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       132 ~~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ..   ..+.+++++.+-.+.+++++++.|+++|+++||.  |..+...-.|-..|..+|+-+.+.
T Consensus        94 TRgkaGadgfykvDhDyvl~~A~~AKe~Gck~fvLvSS~--GAd~sSrFlY~k~KGEvE~~v~eL  156 (238)
T KOG4039|consen   94 TRGKAGADGFYKVDHDYVLQLAQAAKEKGCKTFVLVSSA--GADPSSRFLYMKMKGEVERDVIEL  156 (238)
T ss_pred             cccccccCceEeechHHHHHHHHHHHhCCCeEEEEEecc--CCCcccceeeeeccchhhhhhhhc
Confidence            54   3567889999999999999999999999999994  444444567999999999877654

>PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=99.45  E-value=5.3e-13  Score=105.05  Aligned_cols=117  Identities=17%  Similarity=0.045  Sum_probs=91.5

Q ss_pred             HHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc----CccEeEEccccCC--CCccchhhhHHH
Q 028890           72 ICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGGFG--SNSYMYKINGTA  145 (202)
Q Consensus        72 l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~vi~~a~~~~--~~~~~~~~n~~~  145 (202)
                      ++++|+++|++|++++|+....      ...+++++|++|.+++.++++    ++|++|||||...  ++...+++|+.+
T Consensus         1 ~a~~l~~~G~~Vv~~~r~~~~~------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~li~nAG~~~~~~~~~~~~vN~~~   74 (241)
T PRK12428          1 TARLLRFLGARVIGVDRREPGM------TLDGFIQADLGDPASIDAAVAALPGRIDALFNIAGVPGTAPVELVARVNFLG   74 (241)
T ss_pred             ChHHHHhCCCEEEEEeCCcchh------hhhHhhcccCCCHHHHHHHHHHhcCCCeEEEECCCCCCCCCHHHhhhhchHH
Confidence            4688999999999999986542      124678999999999988876    4899999999643  456688999999


Q ss_pred             HHHHHHHHHHc--CCCEEEEEec-cccCc--------------------------CCcCCcchHHHHHHHHHHHHHhc
Q 028890          146 NINAIRAASEK--GVKRFVYISA-ADFGV--------------------------ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       146 ~~~~~~~~~~~--~~~~~v~~SS-~~~~~--------------------------~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +..+++++.+.  ..++||++|| ..++.                          +.....+|+.+|.+.+.+.+.++
T Consensus        75 ~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la  152 (241)
T PRK12428         75 LRHLTEALLPRMAPGGAIVNVASLAGAEWPQRLELHKALAATASFDEGAAWLAAHPVALATGYQLSKEALILWTMRQA  152 (241)
T ss_pred             HHHHHHHHHHhccCCcEEEEeCcHHhhccccchHHHHhhhccchHHHHHHhhhccCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999988653  2369999999 44531                          22345789999999998887665

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=99.44  E-value=7.7e-13  Score=105.17  Aligned_cols=138  Identities=20%  Similarity=0.197  Sum_probs=102.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc------ccccCCCceeEEEccCCCHhh----HHHHhcC--cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNLLSSDS----WKEALDG--VT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------~~~~~~~~~~~~~~D~~~~~~----~~~~~~~--~d  123 (202)
                      +.=.+|||||.+||++.+++|+++|.+|+.+.|+.++.      .....+-.+.++.+|+.+.+.    +.+.+.+  +.
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~Vg  128 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVG  128 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceE
Confidence            45789999999999999999999999999999997652      112223467889999987654    5555554  56


Q ss_pred             EeEEccccCCCC------------ccchhhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          124 AVISCVGGFGSN------------SYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       124 ~vi~~a~~~~~~------------~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|+|+|...+.            ...+.+|..++..+.+    .+.+.+-+-++++||...-.+.+.++.|+.+|...+
T Consensus       129 ILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G~IvnigS~ag~~p~p~~s~ysasK~~v~  208 (312)
T KOG1014|consen  129 ILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFVD  208 (312)
T ss_pred             EEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCceEEEeccccccccChhHHHHHHHHHHHH
Confidence            999999975421            2345677777654444    344555668999999655566677789999999888


Q ss_pred             HHHHHh
Q 028890          188 DVAACQ  193 (202)
Q Consensus       188 ~~~~~~  193 (202)
                      .+.++.
T Consensus       209 ~~S~~L  214 (312)
T KOG1014|consen  209 FFSRCL  214 (312)
T ss_pred             HHHHHH
Confidence            776653

>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B

Probab=99.42  E-value=4.3e-13  Score=105.44  Aligned_cols=132  Identities=15%  Similarity=0.079  Sum_probs=97.6

Q ss_pred             ccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc---cc-ccCCCceeEEEccCCCHhhHHHHh--------cCccEeEEc
Q 028890           63 GGN--GFVGSHICREALDRGLTVASLSRSGRSS---LR-DSWANNVIWHQGNLLSSDSWKEAL--------DGVTAVISC  128 (202)
Q Consensus        63 Ga~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~---~~-~~~~~~~~~~~~D~~~~~~~~~~~--------~~~d~vi~~  128 (202)
                      |++  ++||.++++.|+++|++|++++|+..+.   .. .....+..++.+|+.+++++++++        .++|++|||
T Consensus         1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~~g~iD~lV~~   80 (241)
T PF13561_consen    1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLSDEESVEALFDEAVERFGGRIDILVNN   80 (241)
T ss_dssp             STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTTSHHHHHHHHHHHHHHHCSSESEEEEE
T ss_pred             CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCcchHHHHHHHHHHHhhcCCCeEEEEec
Confidence            566  9999999999999999999999987641   11 111123447999999999887764        358999999


Q ss_pred             cccCCC--------------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          129 VGGFGS--------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       129 a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ++....              +...+++|+.++..+++++.+.  .-+++|++||.....+.+....|+.+|.+.+.+++.
T Consensus        81 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~~~~~~~~y~~sKaal~~l~r~  160 (241)
T PF13561_consen   81 AGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQRPMPGYSAYSASKAALEGLTRS  160 (241)
T ss_dssp             EESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTSBSTTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcccCccchhhHHHHHHHHHHHHH
Confidence            986432              1345678888888887777432  125899999943334455556899999999999988


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       161 lA  162 (241)
T PF13561_consen  161 LA  162 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

...

>KOG4288 consensus Predicted oxidoreductase [General function prediction only]

Probab=99.39  E-value=6.6e-13  Score=101.16  Aligned_cols=138  Identities=44%  Similarity=0.642  Sum_probs=123.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~  136 (202)
                      ...++.|++|+.|.++++.....++.|..+.|+..+.....+...+.|..+|....+-++..+.++..++.+++.++...
T Consensus        53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~~l~sw~~~vswh~gnsfssn~~k~~l~g~t~v~e~~ggfgn~~  132 (283)
T KOG4288|consen   53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQTLSSWPTYVSWHRGNSFSSNPNKLKLSGPTFVYEMMGGFGNII  132 (283)
T ss_pred             HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcchhhCCCcccchhhccccccCcchhhhcCCcccHHHhcCccchH
Confidence            46888999999999999999999999999999988777777888999999999877767778889999999999988888


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          137 YMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       137 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .+.++|-+...+.++++++.|+++|+|+|...+|.++..+.+|..+|..+|.-+....
T Consensus       133 ~m~~ing~ani~a~kaa~~~gv~~fvyISa~d~~~~~~i~rGY~~gKR~AE~Ell~~~  190 (283)
T KOG4288|consen  133 LMDRINGTANINAVKAAAKAGVPRFVYISAHDFGLPPLIPRGYIEGKREAEAELLKKF  190 (283)
T ss_pred             HHHHhccHhhHHHHHHHHHcCCceEEEEEhhhcCCCCccchhhhccchHHHHHHHHhc
Confidence            8889999999999999999999999999998888888888899999999996665543

>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]

Probab=99.39  E-value=2.9e-12  Score=100.34  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=84.6

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-CccEeEEccccC--C-C
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-GVTAVISCVGGF--G-S  134 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~vi~~a~~~--~-~  134 (202)
                      |+||||||+||++|+..|.+.||+|++++|++.+..... ...+.       ..+.+.+... ++|+|||.||..  . .
T Consensus         1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~-~~~v~-------~~~~~~~~~~~~~DavINLAG~~I~~rr   72 (297)
T COG1090           1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQNL-HPNVT-------LWEGLADALTLGIDAVINLAGEPIAERR   72 (297)
T ss_pred             CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhhc-Ccccc-------ccchhhhcccCCCCEEEECCCCcccccc
Confidence            689999999999999999999999999999987642211 11222       2233444444 799999999942  2 2


Q ss_pred             Cc-----cchhhhHHHHHHHHHHHHHc--CCCEEEEEec-cccCcCCc-------C--CcchHHHHHHHHHHHHHhcccC
Q 028890          135 NS-----YMYKINGTANINAIRAASEK--GVKRFVYISA-ADFGVANY-------L--LQGYYEGKVLSSDVAACQSVLG  197 (202)
Q Consensus       135 ~~-----~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS-~~~~~~~~-------~--~~~Y~~sK~~~E~~~~~~~~l~  197 (202)
                      |.     ...+-.+..|..+.++..+.  +++.+|.-|. ..||...+       +  ...-++.-...|+.......+.
T Consensus        73 Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~~~isaSAvGyYG~~~~~~~tE~~~~g~~Fla~lc~~WE~~a~~a~~~g  152 (297)
T COG1090          73 WTEKQKEEIRQSRINTTEKLVELIAASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLAQLCQDWEEEALQAQQLG  152 (297)
T ss_pred             CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCcEEEecceEEEecCCCceeeecCCCCCCChHHHHHHHHHHHHhhhhhcC
Confidence            32     23345577888888887744  4555555555 45664321       1  1223344445566666555544


Q ss_pred             CCCC
Q 028890          198 SSRC  201 (202)
Q Consensus       198 ~~~~  201 (202)
                      +.+|
T Consensus       153 tRvv  156 (297)
T COG1090         153 TRVV  156 (297)
T ss_pred             ceEE
Confidence            4443

>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]

Probab=99.37  E-value=7.5e-12  Score=105.51  Aligned_cols=142  Identities=19%  Similarity=0.227  Sum_probs=107.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC---CeEEEEecCCCCccc--------------------ccCCCceeEEEccCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLR--------------------DSWANNVIWHQGNLL  110 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l~r~~~~~~~--------------------~~~~~~~~~~~~D~~  110 (202)
                      .++++|+|||||||+|+-+++.|+..-   .+++.+.|.......                    .....++..+.+|+.
T Consensus        10 ~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~~~~lF~~l~~~~p~~l~Kv~pi~GDi~   89 (467)
T KOG1221|consen   10 YKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTELKDPLFEVLKEKKPEALEKVVPIAGDIS   89 (467)
T ss_pred             hCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHHhhhHHHHHHhhCccceecceecccccc
Confidence            368899999999999999999999863   388999887654211                    001256788899986


Q ss_pred             CH------hhHHHHhcCccEeEEccccCCCC---ccchhhhHHHHHHHHHHHHHc-CCCEEEEEecc-c-----------
Q 028890          111 SS------DSWKEALDGVTAVISCVGGFGSN---SYMYKINGTANINAIRAASEK-GVKRFVYISAA-D-----------  168 (202)
Q Consensus       111 ~~------~~~~~~~~~~d~vi~~a~~~~~~---~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS~-~-----------  168 (202)
                      ++      .++..+.+++|+|||+|+.....   +....+|..|++++++.|++. +.+.++++|++ .           
T Consensus        90 ~~~LGis~~D~~~l~~eV~ivih~AAtvrFde~l~~al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy~n~~~~~i~E~~  169 (467)
T KOG1221|consen   90 EPDLGISESDLRTLADEVNIVIHSAATVRFDEPLDVALGINTRGTRNVLQLAKEMVKLKALVHVSTAYSNCNVGHIEEKP  169 (467)
T ss_pred             CcccCCChHHHHHHHhcCCEEEEeeeeeccchhhhhhhhhhhHhHHHHHHHHHHhhhhheEEEeehhheecccccccccc
Confidence            53      34556778899999999986643   446678999999999999886 47899999994 1           


Q ss_pred             cCcC----------------------------CcCCcchHHHHHHHHHHHHHhcc
Q 028890          169 FGVA----------------------------NYLLQGYYEGKVLSSDVAACQSV  195 (202)
Q Consensus       169 ~~~~----------------------------~~~~~~Y~~sK~~~E~~~~~~~~  195 (202)
                      |..+                            ...++.|.-+|..+|+++.++++
T Consensus       170 y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~~  224 (467)
T KOG1221|consen  170 YPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEAE  224 (467)
T ss_pred             cCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhcc
Confidence            1100                            01257799999999999998763

>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.36  E-value=8.6e-12  Score=99.28  Aligned_cols=136  Identities=19%  Similarity=0.307  Sum_probs=100.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhcC-------c
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDG-------V  122 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~-------~  122 (202)
                      .+++|||++.++|..++..+..+|++|+++.|+..+..+       ......+.+..+|+.|.+++..++++       +
T Consensus        34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~kl~~a~~~l~l~~~~~~v~~~S~d~~~Y~~v~~~~~~l~~~~~~~  113 (331)
T KOG1210|consen   34 RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDVIDYDSVSKVIEELRDLEGPI  113 (331)
T ss_pred             ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHHHHHHHhhhhhhhccceeeEeccccccHHHHHHHHhhhhhccCCc
Confidence            699999999999999999999999999999998765211       01112366888999999988877763       6


Q ss_pred             cEeEEccccCC-----C-----CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFG-----S-----NSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~-----~-----~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |.+|+|||..-     +     -+..+++|..|+.++++++..    .. .++|+++||...-.+-..-+.|..+|.+..
T Consensus       114 d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g~I~~vsS~~a~~~i~GysaYs~sK~alr  193 (331)
T KOG1210|consen  114 DNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALR  193 (331)
T ss_pred             ceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCcEEEEehhhhhhcCcccccccccHHHHHH
Confidence            99999999532     1     134678999999998887643    22 349999999322223344467888887776


Q ss_pred             HHHHH
Q 028890          188 DVAAC  192 (202)
Q Consensus       188 ~~~~~  192 (202)
                      .+...
T Consensus       194 gLa~~  198 (331)
T KOG1210|consen  194 GLAEA  198 (331)
T ss_pred             HHHHH
Confidence            66554

>PRK06720 hypothetical protein; Provisional

Probab=99.24  E-value=1.7e-10  Score=86.12  Aligned_cols=79  Identities=11%  Similarity=0.218  Sum_probs=62.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc---c--ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---R--DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~---~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+++||.++++.|+++|++|++++|+.+...   .  ......+.++.+|+.+.+++.++++       +
T Consensus        14 l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~v~~~~~~~G~   93 (169)
T PRK06720         14 LAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRVISITLNAFSR   93 (169)
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            46789999999999999999999999999999998754311   0  0112456788999999988777543       5


Q ss_pred             ccEeEEccccC
Q 028890          122 VTAVISCVGGF  132 (202)
Q Consensus       122 ~d~vi~~a~~~  132 (202)
                      +|++|||||..
T Consensus        94 iDilVnnAG~~  104 (169)
T PRK06720         94 IDMLFQNAGLY  104 (169)
T ss_pred             CCEEEECCCcC
Confidence            89999999954

>KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.6e-10  Score=89.29  Aligned_cols=136  Identities=18%  Similarity=0.222  Sum_probs=104.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----------cccCCCceeEEEccCCCHhhHHHHhc--C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------RDSWANNVIWHQGNLLSSDSWKEALD--G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----------~~~~~~~~~~~~~D~~~~~~~~~~~~--~  121 (202)
                      ..|..+|||-||.=|++|++.|+.+||+|..+.|+...-.           ............+|++|...+.+++.  .
T Consensus        27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~RIeHlY~nP~~h~~~~mkLHYgDmTDss~L~k~I~~ik  106 (376)
T KOG1372|consen   27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTARIEHLYSNPHTHNGASMKLHYGDMTDSSCLIKLISTIK  106 (376)
T ss_pred             cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhhhhhhhcCchhcccceeEEeeccccchHHHHHHHhccC
Confidence            4568899999999999999999999999999988754311           11123567889999999999998887  4


Q ss_pred             ccEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCC---EEEEEecc-ccCc----------CCcCCcchHH
Q 028890          122 VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK---RFVYISAA-DFGV----------ANYLLQGYYE  181 (202)
Q Consensus       122 ~d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~---~~v~~SS~-~~~~----------~~~~~~~Y~~  181 (202)
                      ++-|+|.|+..+      -++..-+++..|+++++++.+.++..   ||.-.|++ -||.          +-.|.+||+.
T Consensus       107 PtEiYnLaAQSHVkvSFdlpeYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQsE~TPFyPRSPYa~  186 (376)
T KOG1372|consen  107 PTEVYNLAAQSHVKVSFDLPEYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQSETTPFYPRSPYAA  186 (376)
T ss_pred             chhhhhhhhhcceEEEeecccceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCcccCCCCCCCChhHH
Confidence            689999998654      34556678899999999999887632   77777773 4663          2346789999


Q ss_pred             HHHHHHHHH
Q 028890          182 GKVLSSDVA  190 (202)
Q Consensus       182 sK~~~E~~~  190 (202)
                      +|..+-.++
T Consensus       187 aKmy~~Wiv  195 (376)
T KOG1372|consen  187 AKMYGYWIV  195 (376)
T ss_pred             hhhhheEEE
Confidence            998775443

>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.3e-10  Score=88.64  Aligned_cols=124  Identities=26%  Similarity=0.266  Sum_probs=93.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~  131 (202)
                      +++|+|||++|.+|++|.+.+.++|.  +-.++.-+.               .+|+++.++.+++|.  .+..|||.|+.
T Consensus         1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~~sk---------------d~DLt~~a~t~~lF~~ekPthVIhlAAm   65 (315)
T KOG1431|consen    1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFIGSK---------------DADLTNLADTRALFESEKPTHVIHLAAM   65 (315)
T ss_pred             CceEEEecCCchHHHHHHHHHHhcCCCCcceEEeccc---------------cccccchHHHHHHHhccCCceeeehHhh
Confidence            47999999999999999999999886  222222211               258889888888887  48999999985


Q ss_pred             CC-------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC---------------CcCCcchHHHHHHHHH
Q 028890          132 FG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA---------------NYLLQGYYEGKVLSSD  188 (202)
Q Consensus       132 ~~-------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~---------------~~~~~~Y~~sK~~~E~  188 (202)
                      .+       .+.++++.|+.-.-|+++.|-+.|++++++.-| ++|..-               .+..-+|+.+|.++.-
T Consensus        66 VGGlf~N~~ynldF~r~Nl~indNVlhsa~e~gv~K~vsclStCIfPdkt~yPIdEtmvh~gpphpsN~gYsyAKr~idv  145 (315)
T KOG1431|consen   66 VGGLFHNNTYNLDFIRKNLQINDNVLHSAHEHGVKKVVSCLSTCIFPDKTSYPIDETMVHNGPPHPSNFGYSYAKRMIDV  145 (315)
T ss_pred             hcchhhcCCCchHHHhhcceechhHHHHHHHhchhhhhhhcceeecCCCCCCCCCHHHhccCCCCCCchHHHHHHHHHHH
Confidence            43       346788999998899999999999998888777 665431               1112369999988876


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      .-+.|.
T Consensus       146 ~n~aY~  151 (315)
T KOG1431|consen  146 QNQAYR  151 (315)
T ss_pred             HHHHHH
Confidence            656663

>PRK08309 short chain dehydrogenase; Provisional

Probab=99.18  E-value=1.5e-10  Score=87.01  Aligned_cols=97  Identities=15%  Similarity=0.191  Sum_probs=73.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhcC-------ccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDG-------VTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~-------~d~v  125 (202)
                      |+++||||+|++|. +++.|.++|++|++++|++.....    ......+.++.+|+.|++++.+++++       +|++
T Consensus         1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i~~~l~~~g~id~l   79 (177)
T PRK08309          1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLENVKRESTTPESITPLPLDYHDDDALKLAIKSTIEKNGPFDLA   79 (177)
T ss_pred             CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCCeEE
Confidence            57999999977765 999999999999999987543211    11134688899999999998887763       4555


Q ss_pred             EEccccCCCCccchhhhHHHHHHHHHHHHHcCCC----EEEEEec
Q 028890          126 ISCVGGFGSNSYMYKINGTANINAIRAASEKGVK----RFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~----~~v~~SS  166 (202)
                      |+.            +++.++.++..+|++.+++    +|+++=.
T Consensus        80 v~~------------vh~~~~~~~~~~~~~~gv~~~~~~~~h~~g  112 (177)
T PRK08309         80 VAW------------IHSSAKDALSVVCRELDGSSETYRLFHVLG  112 (177)
T ss_pred             EEe------------ccccchhhHHHHHHHHccCCCCceEEEEeC
Confidence            543            4455777899999999988    8888765

>PTZ00325 malate dehydrogenase; Provisional

Probab=99.15  E-value=1.4e-09  Score=88.85  Aligned_cols=113  Identities=18%  Similarity=0.198  Sum_probs=85.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCc-ccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSS-LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .+|+||.|+|++|.+|+.++..|..++  .++.++++..... .....+....+...+.+|+.++.+.++++|+||+++|
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            478899999999999999999998665  5899999832211 0011111112334466666666778899999999999


Q ss_pred             cCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          131 GFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       131 ~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ....    +...+..|+....++++++++++++++|+++|
T Consensus        86 ~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~S  125 (321)
T PTZ00325         86 VPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVS  125 (321)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            7443    35677889999999999999999999999999

>KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.10  E-value=4.7e-11  Score=87.57  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=99.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc--ccccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++...+||||..++|++.++.|.++|..|..++-..++-  .......++.|...|++.++++..++.       +.|+
T Consensus         7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~vakelg~~~vf~padvtsekdv~aala~ak~kfgrld~   86 (260)
T KOG1199|consen    7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFTPADVTSEKDVRAALAKAKAKFGRLDA   86 (260)
T ss_pred             hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchHHHHHhCCceEEeccccCcHHHHHHHHHHHHhhccceee
Confidence            4667899999999999999999999999999998765442  223345789999999999998888775       5799


Q ss_pred             eEEccccCC----------------CCccchhhhHHHHHHHHHHHHH--------cCC--CEEEEEeccccCcCCcCCcc
Q 028890          125 VISCVGGFG----------------SNSYMYKINGTANINAIRAASE--------KGV--KRFVYISAADFGVANYLLQG  178 (202)
Q Consensus       125 vi~~a~~~~----------------~~~~~~~~n~~~~~~~~~~~~~--------~~~--~~~v~~SS~~~~~~~~~~~~  178 (202)
                      .++|||...                +....+++|+.|++|+++....        ++-  +-+|...|...-........
T Consensus        87 ~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqrgviintasvaafdgq~gqaa  166 (260)
T KOG1199|consen   87 LVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTGQAA  166 (260)
T ss_pred             eeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcceEEEeeceeeeecCccchhh
Confidence            999999521                2235678999999998876421        122  24666666222233445578


Q ss_pred             hHHHHHHHHH
Q 028890          179 YYEGKVLSSD  188 (202)
Q Consensus       179 Y~~sK~~~E~  188 (202)
                      |.+||.+.-.
T Consensus       167 ysaskgaivg  176 (260)
T KOG1199|consen  167 YSASKGAIVG  176 (260)
T ss_pred             hhcccCceEe
Confidence            9999977653

>KOG2774 consensus NAD dependent epimerase [General function prediction only]

Probab=99.10  E-value=3.9e-10  Score=86.68  Aligned_cols=136  Identities=13%  Similarity=0.100  Sum_probs=99.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEE-ecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l-~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a  129 (202)
                      .+.++|+|||+-|.+|..++..|..+ |.+.+++ +-..+...   .-..-.++..|+.|...+++++-  ++|.+||..
T Consensus        42 ~~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~---V~~~GPyIy~DILD~K~L~eIVVn~RIdWL~HfS  118 (366)
T KOG2774|consen   42 QKAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN---VTDVGPYIYLDILDQKSLEEIVVNKRIDWLVHFS  118 (366)
T ss_pred             CCCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh---hcccCCchhhhhhccccHHHhhcccccceeeeHH
Confidence            35679999999999999999999877 7654444 33222211   11334577889999999988774  699999998


Q ss_pred             ccCC-----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchHHHHHHHHHHHHH
Q 028890          130 GGFG-----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       130 ~~~~-----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~~~  192 (202)
                      +...     .-.-..++|+.|..|+++.+++++. +++.-|+ ..+|...           .|.+.||.||..+|.+-+.
T Consensus       119 ALLSAvGE~NVpLA~~VNI~GvHNil~vAa~~kL-~iFVPSTIGAFGPtSPRNPTPdltIQRPRTIYGVSKVHAEL~GEy  197 (366)
T KOG2774|consen  119 ALLSAVGETNVPLALQVNIRGVHNILQVAAKHKL-KVFVPSTIGAFGPTSPRNPTPDLTIQRPRTIYGVSKVHAELLGEY  197 (366)
T ss_pred             HHHHHhcccCCceeeeecchhhhHHHHHHHHcCe-eEeecccccccCCCCCCCCCCCeeeecCceeechhHHHHHHHHHH
Confidence            7421     2234678999999999999999987 5555555 5666422           2456799999999988876


Q ss_pred             h
Q 028890          193 Q  193 (202)
Q Consensus       193 ~  193 (202)
                      |
T Consensus       198 ~  198 (366)
T KOG2774|consen  198 F  198 (366)
T ss_pred             H
Confidence            5

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=99.03  E-value=1.1e-09  Score=90.88  Aligned_cols=76  Identities=25%  Similarity=0.268  Sum_probs=66.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      |++|+|.|+ |++|+.+++.|+++| .+|++.+|+..+...  ....++++.+++|+.|.+++.+++++.|+||+++.++
T Consensus         1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~   79 (389)
T COG1748           1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF   79 (389)
T ss_pred             CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch
Confidence            579999999 999999999999998 899999999765322  2223589999999999999999999999999999874

>KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.01  E-value=8.6e-10  Score=84.25  Aligned_cols=136  Identities=10%  Similarity=0.039  Sum_probs=91.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEE--------EccCCCHhhHHHHhc------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWH--------QGNLLSSDSWKEALD------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~--------~~D~~~~~~~~~~~~------  120 (202)
                      ..+.+++||++.+||..++..+.+.+.+.....+......    ..+..+.        .+|+++...+.+.++      
T Consensus         5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a~----~~~L~v~~gd~~v~~~g~~~e~~~l~al~e~~r~k~   80 (253)
T KOG1204|consen    5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAE----LEGLKVAYGDDFVHVVGDITEEQLLGALREAPRKKG   80 (253)
T ss_pred             cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhccccc----ccceEEEecCCcceechHHHHHHHHHHHHhhhhhcC
Confidence            5678999999999999999999998875543333221111    1233333        344444443333333      


Q ss_pred             -CccEeEEccccCC-------------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHH
Q 028890          121 -GVTAVISCVGGFG-------------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 -~~d~vi~~a~~~~-------------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                       .-|.||||||..+             +|...|+.|+.....+.+.+..    .. .+-+|++||...-.+-..|..|+.
T Consensus        81 gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~aav~p~~~wa~yc~  160 (253)
T KOG1204|consen   81 GKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCS  160 (253)
T ss_pred             CceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecchhhhccccHHHHhhh
Confidence             3699999999543             2456788998888877665532    22 367999999544455566788999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|++-+.+.+..+
T Consensus       161 ~KaAr~m~f~~lA  173 (253)
T KOG1204|consen  161 SKAARNMYFMVLA  173 (253)
T ss_pred             hHHHHHHHHHHHh
Confidence            9999999988754

>KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism]

Probab=98.99  E-value=6.6e-09  Score=80.71  Aligned_cols=134  Identities=16%  Similarity=0.118  Sum_probs=93.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-----eEEEEecCCCCccc------ccC---CCceeEEEccCCCHhhHHHHhc-
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-----TVASLSRSGRSSLR------DSW---ANNVIWHQGNLLSSDSWKEALD-  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-----~V~~l~r~~~~~~~------~~~---~~~~~~~~~D~~~~~~~~~~~~-  120 (202)
                      .|.++|||++.++|.+|+..|++...     ++.+..|+-++...      ...   ..+++++.+|+++-.++.++.+ 
T Consensus         3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~kae~vc~~lk~f~p~~~i~~~yvlvD~sNm~Sv~~A~~d   82 (341)
T KOG1478|consen    3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEVTYVLVDVSNMQSVFRASKD   82 (341)
T ss_pred             ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChhHHHHHHHHHHHhCCCceeEEEEEEEehhhHHHHHHHHHH
Confidence            46899999999999999999998754     34445566544211      111   2368899999999777666554 


Q ss_pred             ------CccEeEEccccCCCC-------------------------------------ccchhhhHHHHHHHHHHHHHc-
Q 028890          121 ------GVTAVISCVGGFGSN-------------------------------------SYMYKINGTANINAIRAASEK-  156 (202)
Q Consensus       121 ------~~d~vi~~a~~~~~~-------------------------------------~~~~~~n~~~~~~~~~~~~~~-  156 (202)
                            +.|.++.|||.+..+                                     ...|+.|+.|+.-++...... 
T Consensus        83 i~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVFGhfyli~~l~pll  162 (341)
T KOG1478|consen   83 IKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLL  162 (341)
T ss_pred             HHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhcccchhhhHhhhhhHh
Confidence                  579999999954210                                     136789999999887766432 


Q ss_pred             ---CCCEEEEEeccccCcCC---------cCCcchHHHHHHHHHH
Q 028890          157 ---GVKRFVYISAADFGVAN---------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       157 ---~~~~~v~~SS~~~~~~~---------~~~~~Y~~sK~~~E~~  189 (202)
                         ...++|++||.......         ....+|..||++.+-+
T Consensus       163 ~~~~~~~lvwtSS~~a~kk~lsleD~q~~kg~~pY~sSKrl~DlL  207 (341)
T KOG1478|consen  163 CHSDNPQLVWTSSRMARKKNLSLEDFQHSKGKEPYSSSKRLTDLL  207 (341)
T ss_pred             hcCCCCeEEEEeecccccccCCHHHHhhhcCCCCcchhHHHHHHH
Confidence               23499999994333211         2346899999999865

>PLN00106 malate dehydrogenase

Probab=98.97  E-value=7.5e-09  Score=84.71  Aligned_cols=112  Identities=21%  Similarity=0.186  Sum_probs=83.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCc-ccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSS-LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...||.|+|++|.+|..++..|..++.  ++.++++++... .....+........++.+.+++.+.++++|+|||+||.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            446999999999999999999997764  899999876221 00111111122333544555678889999999999996


Q ss_pred             CC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..    .+...+..|.....++++.+++.+.+.+++++|
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvS  135 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIIS  135 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            43    345677889999999999999999999999998

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=98.93  E-value=9.7e-09  Score=84.34  Aligned_cols=109  Identities=11%  Similarity=0.026  Sum_probs=75.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-------CeEEEEecCCCCcccccCCCcee------EEEccCCCHhhHHHHhcCc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-------LTVASLSRSGRSSLRDSWANNVI------WHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-------~~V~~l~r~~~~~~~~~~~~~~~------~~~~D~~~~~~~~~~~~~~  122 (202)
                      ..+|+||||+|++|++++..|+..+       .+++++++++.......  ...+      ....|+....++.+.++++
T Consensus         2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g--~~~Dl~d~~~~~~~~~~~~~~~~~~l~~a   79 (325)
T cd01336           2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEG--VVMELQDCAFPLLKSVVATTDPEEAFKDV   79 (325)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccc--eeeehhhccccccCCceecCCHHHHhCCC
Confidence            3589999999999999999999854       58999998653211110  0111      1123444456677888999


Q ss_pred             cEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 028890          123 TAVISCVGGFGS----NSYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~-~~-~~v~~SS  166 (202)
                      |+|||+||....    ....++.|+.-...+.+.+.++. .+ .++.+|.
T Consensus        80 DiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          80 DVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             CEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            999999997542    24567788888888888887774 34 4555554

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK09620 hypothetical protein; Provisional

Probab=98.88  E-value=1e-08  Score=80.11  Aligned_cols=78  Identities=24%  Similarity=0.279  Sum_probs=54.8

Q ss_pred             CCCeEEEEccC----------------ChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHH
Q 028890           55 PSEKLLVLGGN----------------GFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKE  117 (202)
Q Consensus        55 ~~~~vlVtGa~----------------G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~  117 (202)
                      .+++|+||+|.                |++|.+++++|+++|++|+++++........ .....+..+..|....+.+.+
T Consensus         2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~~~~~~~~~~~V~s~~d~~~~l~~   81 (229)
T PRK09620          2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPNDINNQLELHPFEGIIDLQDKMKS   81 (229)
T ss_pred             CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCcccCCceeEEEEecHHHHHHHHHH
Confidence            57889999876                9999999999999999999988643211110 111233445553333467777


Q ss_pred             Hhc--CccEeEEccccC
Q 028890          118 ALD--GVTAVISCVGGF  132 (202)
Q Consensus       118 ~~~--~~d~vi~~a~~~  132 (202)
                      ++.  ++|+|||+|+..
T Consensus        82 ~~~~~~~D~VIH~AAvs   98 (229)
T PRK09620         82 IITHEKVDAVIMAAAGS   98 (229)
T ss_pred             HhcccCCCEEEECcccc
Confidence            774  689999999963

>PRK05086 malate dehydrogenase; Provisional

Probab=98.87  E-value=4.9e-08  Score=79.81  Aligned_cols=108  Identities=19%  Similarity=0.183  Sum_probs=77.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHH-C--CCeEEEEecCCCCccc--ccCC-CceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           57 EKLLVLGGNGFVGSHICREALD-R--GLTVASLSRSGRSSLR--DSWA-NNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~-~--g~~V~~l~r~~~~~~~--~~~~-~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ||++|+||+|.+|++++..|.. .  ++++++++|++.....  ...+ +....+.+  .+.+++.+.++++|+||.++|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~--~~~~d~~~~l~~~DiVIitaG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKG--FSGEDPTPALEGADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEE--eCCCCHHHHcCCCCEEEEcCC
Confidence            6899999999999999998855 2  4578888876432100  1111 11122332  223455667789999999999


Q ss_pred             cCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          131 GFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       131 ~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ....+    ...+..|......+++++++.+.+++|.+.|
T Consensus        79 ~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvs  118 (312)
T PRK05086         79 VARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIIT  118 (312)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            75533    4567788889999999999999999999887

>PRK13656 trans-2-enoyl-CoA reductase; Provisional

Probab=98.83  E-value=1.1e-07  Score=79.10  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=58.5

Q ss_pred             CCCeEEEEccCChhHHH--HHHHHHHCCCeEEEEecCCCC-c-------------cc---ccCCCceeEEEccCCCHhhH
Q 028890           55 PSEKLLVLGGNGFVGSH--ICREALDRGLTVASLSRSGRS-S-------------LR---DSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~--l~~~Ll~~g~~V~~l~r~~~~-~-------------~~---~~~~~~~~~~~~D~~~~~~~  115 (202)
                      .+|+++|||+++++|.+  +++.| +.|++|+++.+.... .             ..   ......+..+.+|+++++++
T Consensus        40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~E~v  118 (398)
T PRK13656         40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSDEIK  118 (398)
T ss_pred             CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHH
Confidence            46899999999999999  89999 999999888753211 1             00   11123467889999999887


Q ss_pred             HHHhc-------CccEeEEccccC
Q 028890          116 KEALD-------GVTAVISCVGGF  132 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~  132 (202)
                      .++++       ++|++|||++..
T Consensus       119 ~~lie~I~e~~G~IDiLVnSaA~~  142 (398)
T PRK13656        119 QKVIELIKQDLGQVDLVVYSLASP  142 (398)
T ss_pred             HHHHHHHHHhcCCCCEEEECCccC
Confidence            77665       589999999854

>PRK06732 phosphopantothenate--cysteine ligase; Validated

Probab=98.79  E-value=3.2e-08  Score=77.45  Aligned_cols=76  Identities=12%  Similarity=0.057  Sum_probs=53.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC--HhhHHHHhcCccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      .-+++=-.++|++|.+++++|+++|++|+++.|......  ....++.++.++..+  .+.+.+.+.++|+||||||...
T Consensus        16 ~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~~--~~~~~v~~i~v~s~~~m~~~l~~~~~~~DivIh~AAvsd   93 (229)
T PRK06732         16 SVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVKP--EPHPNLSIIEIENVDDLLETLEPLVKDHDVLIHSMAVSD   93 (229)
T ss_pred             CceeecCccchHHHHHHHHHHHhCCCEEEEEECcccccC--CCCCCeEEEEEecHHHHHHHHHHHhcCCCEEEeCCccCC
Confidence            334444477899999999999999999999987643211  112466776654332  2456667778999999999754

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.74  E-value=3.5e-08  Score=83.01  Aligned_cols=73  Identities=36%  Similarity=0.475  Sum_probs=57.9

Q ss_pred             EEEEccCChhHHHHHHHHHHCC-C-eEEEEecCCCCcccc---cCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           59 LLVLGGNGFVGSHICREALDRG-L-TVASLSRSGRSSLRD---SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g-~-~V~~l~r~~~~~~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      |+|.|+ |++|+.+++.|++++ + +|++.+|+..+....   ....++.++++|+.|.+++.++++++|+||+|+|++
T Consensus         1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~   78 (386)
T PF03435_consen    1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF   78 (386)
T ss_dssp             EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred             CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence            789999 999999999999986 4 899999987652221   145799999999999999999999999999999975

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=98.60  E-value=2.3e-07  Score=78.14  Aligned_cols=74  Identities=18%  Similarity=0.195  Sum_probs=58.1

Q ss_pred             CCCCCeEEEEcc----------------CChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH
Q 028890           53 PPPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK  116 (202)
Q Consensus        53 ~~~~~~vlVtGa----------------~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~  116 (202)
                      ..++++++||||                +|.+|.+++++|.++|++|++++++....  .  ..+  +..+|+.+.+++.
T Consensus       185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~~--~--~~~--~~~~dv~~~~~~~  258 (399)
T PRK05579        185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNLP--T--PAG--VKRIDVESAQEML  258 (399)
T ss_pred             ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCcccc--C--CCC--cEEEccCCHHHHH
Confidence            357899999999                88899999999999999999998865321  1  112  3467999988777


Q ss_pred             HHhc----CccEeEEccccC
Q 028890          117 EALD----GVTAVISCVGGF  132 (202)
Q Consensus       117 ~~~~----~~d~vi~~a~~~  132 (202)
                      ++++    ++|++|||||..
T Consensus       259 ~~v~~~~~~~DilI~~Aav~  278 (399)
T PRK05579        259 DAVLAALPQADIFIMAAAVA  278 (399)
T ss_pred             HHHHHhcCCCCEEEEccccc
Confidence            6653    589999999964

>TIGR00715 precor6x_red precorrin-6x reductase

Probab=98.59  E-value=6.4e-07  Score=71.09  Aligned_cols=74  Identities=12%  Similarity=0.232  Sum_probs=57.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGF  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~  132 (202)
                      |+|+|+||||. |+.+++.|.++|++|++..++........ ..+...+..+..|.+++.+.++  ++|+||+++.++
T Consensus         1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~-~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAtHPf   76 (256)
T TIGR00715         1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYP-IHQALTVHTGALDPQELREFLKRHSIDILVDATHPF   76 (256)
T ss_pred             CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccccc-ccCCceEEECCCCHHHHHHHHHhcCCCEEEEcCCHH
Confidence            58999999999 99999999999999999998875432211 2223345566678888888876  499999999864

This enzyme was found to be a monomer by gel filtration.

>KOG2733 consensus Uncharacterized membrane protein [Function unknown]

Probab=98.58  E-value=1.9e-07  Score=75.89  Aligned_cols=75  Identities=23%  Similarity=0.446  Sum_probs=60.8

Q ss_pred             eEEEEccCChhHHHHHHHHHH----CCCeEEEEecCCCCccc----------ccCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           58 KLLVLGGNGFVGSHICREALD----RGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~----~g~~V~~l~r~~~~~~~----------~~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      -++|.||+||.|.++++.+..    .|...-+..|+..+..+          ......+ ++.+|..|++++.++.+.+.
T Consensus         7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~-i~i~D~~n~~Sl~emak~~~   85 (423)
T KOG2733|consen    7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSV-ILIADSANEASLDEMAKQAR   85 (423)
T ss_pred             eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHHHHHHHHHHHhhccCCCcccce-EEEecCCCHHHHHHHHhhhE
Confidence            589999999999999999999    67777777888654211          1112234 88999999999999999999


Q ss_pred             EeEEccccCC
Q 028890          124 AVISCVGGFG  133 (202)
Q Consensus       124 ~vi~~a~~~~  133 (202)
                      +|+||+|++.
T Consensus        86 vivN~vGPyR   95 (423)
T KOG2733|consen   86 VIVNCVGPYR   95 (423)
T ss_pred             EEEeccccce
Confidence            9999999864

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=98.57  E-value=1.6e-07  Score=71.56  Aligned_cols=78  Identities=18%  Similarity=0.147  Sum_probs=61.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--c-c-CCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D-S-WANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~-~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      .++++++|+||+|++|+.+++.|.+.|++|++++|+..+...  . . ...+..+..+|..+.+++.++++++|+||++.
T Consensus        26 l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at  105 (194)
T cd01078          26 LKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAG  105 (194)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECC
Confidence            467899999999999999999999999999999987543111  0 0 01234566778889998999999999999876


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      ..
T Consensus       106 ~~  107 (194)
T cd01078         106 AA  107 (194)
T ss_pred             CC
Confidence            53

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>cd00704 MDH Malate dehydrogenase

Probab=98.46  E-value=2.8e-06  Score=69.81  Aligned_cols=101  Identities=13%  Similarity=0.036  Sum_probs=70.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCcccccCCCceeEEEccCCCH-----------hhHHHHh
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLRDSWANNVIWHQGNLLSS-----------DSWKEAL  119 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~-----------~~~~~~~  119 (202)
                      +|.|+||+|.+|..++..|+.+|.       +++.++++...       +..+....|+.|.           ....+.+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~-------~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~   74 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM-------KALEGVVMELQDCAFPLLKGVVITTDPEEAF   74 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc-------CccceeeeehhhhcccccCCcEEecChHHHh
Confidence            799999999999999999988653       48888886521       1122233333332           3456788


Q ss_pred             cCccEeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcC-CCE-EEEEe
Q 028890          120 DGVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKG-VKR-FVYIS  165 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~-~~~-~v~~S  165 (202)
                      +++|+|||+||....+    ...+..|..-...+.+.+++.. .+- ++.+|
T Consensus        75 ~~aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs  126 (323)
T cd00704          75 KDVDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG  126 (323)
T ss_pred             CCCCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            8999999999974422    3456778888888888888873 554 44444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=98.42  E-value=3.5e-06  Score=69.28  Aligned_cols=101  Identities=12%  Similarity=0.021  Sum_probs=70.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCcccccCCCceeEEEccCCCHh-----------hHHHHh
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLRDSWANNVIWHQGNLLSSD-----------SWKEAL  119 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~-----------~~~~~~  119 (202)
                      +|.|+|++|.+|.+++..|...+.       +++.+++.+...       ..+....|+.|..           ...+.+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-------~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~   73 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-------VLEGVVMELMDCAFPLLDGVVPTHDPAVAF   73 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-------ccceeEeehhcccchhcCceeccCChHHHh
Confidence            589999999999999999987553       588888865431       1122233333332           335678


Q ss_pred             cCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcC-CC-EEEEEe
Q 028890          120 DGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKG-VK-RFVYIS  165 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~-~~-~~v~~S  165 (202)
                      +++|+||++||....    +...++.|+.-...+.+...+.. .+ .++.+|
T Consensus        74 ~~aDiVVitAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs  125 (324)
T TIGR01758        74 TDVDVAILVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG  125 (324)
T ss_pred             CCCCEEEEcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            899999999997432    34566788888888888888873 54 444444

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG0623 FabI Enoyl-[acyl-carrier-protein]

Probab=98.38  E-value=1.3e-05  Score=61.75  Aligned_cols=140  Identities=9%  Similarity=0.019  Sum_probs=90.5

Q ss_pred             CCCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCCCCccc--c--cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSSLR--D--SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~--~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++|+|-  ...|+..++++|.++|+++......+.-..+  .  .......+++||+++.+++++++.       
T Consensus         4 L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~s~~v~~cDV~~d~~i~~~f~~i~~~~g   83 (259)
T COG0623           4 LEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELGSDLVLPCDVTNDESIDALFATIKKKWG   83 (259)
T ss_pred             cCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhccCCeEEecCCCCHHHHHHHHHHHHHhhC
Confidence            57899999985  5689999999999999998887766521110  1  111235678999999999888876       


Q ss_pred             CccEeEEccccCCC------C--------ccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS------N--------SYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~------~--------~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      .+|.+||+.+....      .        ...+++.......+.++++.-  +-..++-++=......-+.-+..+.+|.
T Consensus        84 ~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r~vPnYNvMGvAKA  163 (259)
T COG0623          84 KLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSERVVPNYNVMGVAKA  163 (259)
T ss_pred             cccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEeccceeecCCCchhHHHHH
Confidence            47999999985431      1        112233333334445555432  2346665553211122333467899999


Q ss_pred             HHHHHHHHh
Q 028890          185 LSSDVAACQ  193 (202)
Q Consensus       185 ~~E~~~~~~  193 (202)
                      +.|.-++..
T Consensus       164 aLEasvRyL  172 (259)
T COG0623         164 ALEASVRYL  172 (259)
T ss_pred             HHHHHHHHH
Confidence            999888764

>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic

Probab=98.35  E-value=2.8e-06  Score=71.42  Aligned_cols=99  Identities=15%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             CCCCCeEEEEcc----------------CChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhH-
Q 028890           53 PPPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW-  115 (202)
Q Consensus        53 ~~~~~~vlVtGa----------------~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~-  115 (202)
                      ..++++++||||                +|.+|.++++.|..+|++|+++.+......    ...+  ..+|+.+.+++ 
T Consensus       182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~~----~~~~--~~~~v~~~~~~~  255 (390)
T TIGR00521       182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLLT----PPGV--KSIKVSTAEEML  255 (390)
T ss_pred             ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccCC----CCCc--EEEEeccHHHHH
Confidence            357899999999                356999999999999999999887653321    1222  45788888777 


Q ss_pred             HHHh----cCccEeEEccccCCCC------------ccchhhhHHHHHHHHHHHHHcC
Q 028890          116 KEAL----DGVTAVISCVGGFGSN------------SYMYKINGTANINAIRAASEKG  157 (202)
Q Consensus       116 ~~~~----~~~d~vi~~a~~~~~~------------~~~~~~n~~~~~~~~~~~~~~~  157 (202)
                      ++++    .++|++|+|||.....            ...+..++..+..+++..++..
T Consensus       256 ~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~  313 (390)
T TIGR00521       256 EAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK  313 (390)
T ss_pred             HHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence            4444    3589999999964311            1122345555556677666543

This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.30  E-value=5.7e-06  Score=59.89  Aligned_cols=103  Identities=17%  Similarity=0.191  Sum_probs=70.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      +||.|+|++|.+|++++..|..++.  ++++++++++....         .....+..+...   +    .+.++++|+|
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~---~----~~~~~~aDiv   73 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSG---D----YEALKDADIV   73 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEES---S----GGGGTTESEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccc---c----ccccccccEE
Confidence            5899999999999999999999974  89999988543110         011122223322   2    3456799999


Q ss_pred             EEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |.++|....    ....++.|..-...+.+...+.+.+-++.+-|
T Consensus        74 vitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt  118 (141)
T PF00056_consen   74 VITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVT  118 (141)
T ss_dssp             EETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred             EEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence            999996432    24466788888888888888887654444443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=98.29  E-value=2.1e-06  Score=69.51  Aligned_cols=77  Identities=13%  Similarity=0.136  Sum_probs=58.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCe-EEEEecCCC---Cccc--c---cCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGR---SSLR--D---SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l~r~~~---~~~~--~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      .++++++|+|| |++|++++..|.+.|++ |++++|+..   +...  .   .....+.+..+|+.+.+++.+.++.+|+
T Consensus       124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~Di  202 (289)
T PRK12548        124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDI  202 (289)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCE
Confidence            45789999999 89999999999999985 999999852   2111  0   1112345667888888888888888999


Q ss_pred             eEEcccc
Q 028890          125 VISCVGG  131 (202)
Q Consensus       125 vi~~a~~  131 (202)
                      +|||-..
T Consensus       203 lINaTp~  209 (289)
T PRK12548        203 LVNATLV  209 (289)
T ss_pred             EEEeCCC
Confidence            9998753

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.28  E-value=1.5e-06  Score=71.45  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHC-C-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDR-G-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~-g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ..++++|+||||+|+||+.++++|+++ | .+++++.|+..+.....  .  ++..+|+   .++.+++.++|+|||+++
T Consensus       152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La--~--el~~~~i---~~l~~~l~~aDiVv~~ts  224 (340)
T PRK14982        152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQ--A--ELGGGKI---LSLEEALPEADIVVWVAS  224 (340)
T ss_pred             CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHH--H--HhccccH---HhHHHHHccCCEEEECCc
Confidence            457899999999999999999999865 5 58898888754321110  1  1112333   346678889999999998


Q ss_pred             cCC
Q 028890          131 GFG  133 (202)
Q Consensus       131 ~~~  133 (202)
                      ...
T Consensus       225 ~~~  227 (340)
T PRK14982        225 MPK  227 (340)
T ss_pred             CCc
Confidence            644

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=1.7e-06  Score=69.88  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      ....++|.||+||.|..++++|..+|.+-..-.|+..+.......-+.++-..++.+++.+++...+.++|+||+|++.
T Consensus         5 ~e~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~~~~~~~VVlncvGPyt   83 (382)
T COG3268           5 REYDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEAMASRTQVVLNCVGPYT   83 (382)
T ss_pred             cceeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHHHHhcceEEEecccccc
Confidence            3457999999999999999999999998866678765421111111223333344459999999999999999999864

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=98.25  E-value=9.3e-06  Score=63.41  Aligned_cols=74  Identities=24%  Similarity=0.354  Sum_probs=61.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC-CCceeEEEccCCCHhhHHHH-hcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~  131 (202)
                      |+++|.|+ |-+|..+++.|.++|++|+++++++........ ......+.+|-+|++.+.++ ++++|+++-.-+.
T Consensus         1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            57899998 999999999999999999999998765333121 25788999999999999987 7789999887764

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=98.19  E-value=8.2e-06  Score=68.46  Aligned_cols=98  Identities=18%  Similarity=0.284  Sum_probs=62.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHH-HhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~vi~~a~~  131 (202)
                      .++++|.|.||||++|+.+++.|.++ ++++..+.++...- .............|+.+.+.++. .++++|+||.+.+.
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG-~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~  114 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAG-QSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH  114 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcC-CCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH
Confidence            36679999999999999999999999 56999888753321 11001111222234433332332 25789999998864


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            ....++..+ +.+ .++|-.|+
T Consensus       115 ~------------~s~~i~~~~-~~g-~~VIDlSs  135 (381)
T PLN02968        115 G------------TTQEIIKAL-PKD-LKIVDLSA  135 (381)
T ss_pred             H------------HHHHHHHHH-hCC-CEEEEcCc
Confidence            1            344556665 345 58998888

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=98.10  E-value=3.9e-05  Score=63.41  Aligned_cols=70  Identities=19%  Similarity=0.284  Sum_probs=47.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++|+|.||+|++|+.+++.|.++||   ++..+.+.......... .+......|+.+.     .++++|+||.++|.
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~-~g~~i~v~d~~~~-----~~~~vDvVf~A~g~   73 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSF-KGKELKVEDLTTF-----DFSGVDIALFSAGG   73 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeee-CCceeEEeeCCHH-----HHcCCCEEEECCCh
Confidence            46899999999999999999999876   45777765433211111 1234444455422     23689999999874

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=98.07  E-value=1.1e-05  Score=62.97  Aligned_cols=69  Identities=13%  Similarity=0.111  Sum_probs=48.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh-------cCccEeEEcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-------DGVTAVISCV  129 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~d~vi~~a  129 (202)
                      -+++=-.++|+||.++++.|+++|++|+++++.....  .   .  ....+|+.+.+++.+++       .++|++||||
T Consensus        16 VR~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~l~--~---~--~~~~~Dv~d~~s~~~l~~~v~~~~g~iDiLVnnA   88 (227)
T TIGR02114        16 VRSITNHSTGHLGKIITETFLSAGHEVTLVTTKRALK--P---E--PHPNLSIREIETTKDLLITLKELVQEHDILIHSM   88 (227)
T ss_pred             ceeecCCcccHHHHHHHHHHHHCCCEEEEEcChhhcc--c---c--cCCcceeecHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            3444445689999999999999999999887632111  0   0  12347888877666543       3589999999


Q ss_pred             ccC
Q 028890          130 GGF  132 (202)
Q Consensus       130 ~~~  132 (202)
                      |..
T Consensus        89 gv~   91 (227)
T TIGR02114        89 AVS   91 (227)
T ss_pred             Eec
Confidence            953

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism

Probab=98.07  E-value=2.3e-05  Score=59.28  Aligned_cols=72  Identities=17%  Similarity=0.155  Sum_probs=43.3

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC--HhhHHHHhcCccEeEEccccCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      |++=--++|.+|.+|++.+..+|++|+.+.....-.    .+.++..+..+-.+  .+.+.+.++..|++||+|++.+
T Consensus        21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~----~p~~~~~i~v~sa~em~~~~~~~~~~~Di~I~aAAVsD   94 (185)
T PF04127_consen   21 RFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP----PPPGVKVIRVESAEEMLEAVKELLPSADIIIMAAAVSD   94 (185)
T ss_dssp             EEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS--------TTEEEEE-SSHHHHHHHHHHHGGGGSEEEE-SB--S
T ss_pred             eEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc----ccccceEEEecchhhhhhhhccccCcceeEEEecchhh
Confidence            444445689999999999999999999988763211    13467777654321  2344455567899999999654

These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.

>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]

Probab=98.05  E-value=0.00045  Score=50.71  Aligned_cols=133  Identities=20%  Similarity=0.219  Sum_probs=76.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCC---CHhh----HHHHhc--CccEeEE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL---SSDS----WKEALD--GVTAVIS  127 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~---~~~~----~~~~~~--~~d~vi~  127 (202)
                      .+|+|.||-|-+|++.++.+.+++|-|.-++-....+..    .. .++..|-+   .+++    +-+.++  .+|.||.
T Consensus         4 grVivYGGkGALGSacv~~FkannywV~siDl~eNe~Ad----~s-I~V~~~~swtEQe~~v~~~vg~sL~gekvDav~C   78 (236)
T KOG4022|consen    4 GRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQAD----SS-ILVDGNKSWTEQEQSVLEQVGSSLQGEKVDAVFC   78 (236)
T ss_pred             ceEEEEcCcchHhHHHHHHHHhcCeEEEEEeeccccccc----ce-EEecCCcchhHHHHHHHHHHHHhhcccccceEEE
Confidence            589999999999999999999999999888766543211    11 12222221   1222    223333  4899999


Q ss_pred             ccccCCC-C----------ccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          128 CVGGFGS-N----------SYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       128 ~a~~~~~-~----------~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .||.+.. +          +-+++-.+...---...+.++ +.+-++-+.. ...-.+.+..-+|+.+|.++.+++++..
T Consensus        79 VAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~GGLL~LtGAkaAl~gTPgMIGYGMAKaAVHqLt~SLa  158 (236)
T KOG4022|consen   79 VAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPGGLLQLTGAKAALGGTPGMIGYGMAKAAVHQLTSSLA  158 (236)
T ss_pred             eeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCCceeeecccccccCCCCcccchhHHHHHHHHHHHHhc
Confidence            9986531 1          112222222221112222222 2233444433 2222344556789999999999999864

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.02  E-value=2.8e-05  Score=72.30  Aligned_cols=77  Identities=21%  Similarity=0.132  Sum_probs=59.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-Ce-------------EEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHHH
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LT-------------VASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEA  118 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~-------------V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~  118 (202)
                      .++++|+|.|+ |++|+..++.|.+.+ ++             |.+.+++....... ...++++.+..|+.|.+++.++
T Consensus       567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~  645 (1042)
T PLN02819        567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKY  645 (1042)
T ss_pred             ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHh
Confidence            45789999998 999999999998763 33             66666664332111 1123678899999999999999


Q ss_pred             hcCccEeEEcccc
Q 028890          119 LDGVTAVISCVGG  131 (202)
Q Consensus       119 ~~~~d~vi~~a~~  131 (202)
                      ++++|+||++...
T Consensus       646 v~~~DaVIsalP~  658 (1042)
T PLN02819        646 VSQVDVVISLLPA  658 (1042)
T ss_pred             hcCCCEEEECCCc
Confidence            9999999999975

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=98.00  E-value=0.00011  Score=60.38  Aligned_cols=132  Identities=8%  Similarity=-0.005  Sum_probs=84.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCccc-----ccCC------CceeEEEccCCCHhhHHH
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLR-----DSWA------NNVIWHQGNLLSSDSWKE  117 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~~-----~~~~------~~~~~~~~D~~~~~~~~~  117 (202)
                      .+||.|+|++|.+|..++..|+..|.       +++.++..+.....     ...+      .++++     .  ....+
T Consensus         2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i-----~--~~~~~   74 (322)
T cd01338           2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI-----T--DDPNV   74 (322)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE-----e--cCcHH
Confidence            46999999999999999999998774       68888885432110     0000      11221     1  11246


Q ss_pred             HhcCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCC-C-EEEEEeccc-------cC-c-CCcCCcchHHH
Q 028890          118 ALDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGV-K-RFVYISAAD-------FG-V-ANYLLQGYYEG  182 (202)
Q Consensus       118 ~~~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~-~-~~v~~SS~~-------~~-~-~~~~~~~Y~~s  182 (202)
                      .++++|+||.+||....    ....+..|..-...+.+...+.+. . .+|.+|.-.       +. . .-++...|+.+
T Consensus        75 ~~~daDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPvD~~t~~~~k~sg~~p~~~ViG~t  154 (322)
T cd01338          75 AFKDADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPCNTNALIAMKNAPDIPPDNFTAMT  154 (322)
T ss_pred             HhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcHHHHHHHHHHHcCCCChHheEEeh
Confidence            67899999999997432    244567788888888888888773 5 455554311       00 1 12234568888


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      +...+++...++
T Consensus       155 ~LDs~Rl~~~la  166 (322)
T cd01338         155 RLDHNRAKSQLA  166 (322)
T ss_pred             HHHHHHHHHHHH
Confidence            888887766543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.96  E-value=4.2e-05  Score=65.63  Aligned_cols=73  Identities=21%  Similarity=0.188  Sum_probs=54.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ++++++|+|+++ +|..+++.|+++|++|++.+++.....    ......++.++.+|..+     +...++|+||+++|
T Consensus         4 ~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~d~vv~~~g   77 (450)
T PRK14106          4 KGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE-----EFLEGVDLVVVSPG   77 (450)
T ss_pred             CCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch-----hHhhcCCEEEECCC
Confidence            568999999855 999999999999999999998753221    11112367788888765     33567999999998


Q ss_pred             cCC
Q 028890          131 GFG  133 (202)
Q Consensus       131 ~~~  133 (202)
                      ...
T Consensus        78 ~~~   80 (450)
T PRK14106         78 VPL   80 (450)
T ss_pred             CCC
Confidence            643

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.95  E-value=9.5e-05  Score=61.08  Aligned_cols=93  Identities=18%  Similarity=0.220  Sum_probs=55.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ++++|.|+||||++|..+++.|.+++|   ++..+... ...-......+   ...++.+.+.. + ++++|++|.+.+.
T Consensus         3 ~~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~aG~~l~~~~---~~l~~~~~~~~-~-~~~vD~vFla~p~   76 (336)
T PRK05671          3 QPLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESAGHSVPFAG---KNLRVREVDSF-D-FSQVQLAFFAAGA   76 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccCCCeeccCC---cceEEeeCChH-H-hcCCCEEEEcCCH
Confidence            457999999999999999999998766   44444332 22111010111   12333333322 2 4789999998863


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            ....+++.+.+.|+ ++|=.|+
T Consensus        77 ~------------~s~~~v~~~~~~G~-~VIDlS~   98 (336)
T PRK05671         77 A------------VSRSFAEKARAAGC-SVIDLSG   98 (336)
T ss_pred             H------------HHHHHHHHHHHCCC-eEEECch
Confidence            1            11235667767775 5666665

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=97.94  E-value=8.6e-05  Score=60.73  Aligned_cols=109  Identities=15%  Similarity=0.112  Sum_probs=68.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCC--CCccccc--CCCc--eeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSG--RSSLRDS--WANN--VIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~--~~~~~~~--~~~~--~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      |+|.|+|++|.+|..++..|+..|+  +|++++|..  +......  ....  ......++.-..+.+ .+.++|+||.+
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~-~l~~aDiViit   79 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLS-DVAGSDIVIIT   79 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHH-HhCCCCEEEEe
Confidence            5899999999999999999999986  599999854  2110000  0000  000000111111133 47899999999


Q ss_pred             cccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          129 VGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       129 a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      +|....+    ...++.|..-...+++.+.+.+.+ .+|.+++
T Consensus        80 ag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n  122 (309)
T cd05294          80 AGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN  122 (309)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            9964322    345567778888888887776544 5666665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.94  E-value=2e-05  Score=67.64  Aligned_cols=73  Identities=21%  Similarity=0.210  Sum_probs=59.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      |+|+|.|+ |.+|+++++.|.++|++|+++++++..........++.++.+|..+++.+.++ ++++|.||.+..
T Consensus         1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~   74 (453)
T PRK09496          1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTD   74 (453)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecC
Confidence            58999998 99999999999999999999998765422211124688999999999999888 788999988764

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.91  E-value=0.00012  Score=60.15  Aligned_cols=110  Identities=13%  Similarity=0.050  Sum_probs=69.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      ..||.|+|++|.+|.+++..|+..|.       +++.++..+.....     ...+...... .+..-...-.+.++++|
T Consensus         3 p~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~-~~~~i~~~~~~~~~daD   81 (323)
T TIGR01759         3 PVRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLL-AGVVATTDPEEAFKDVD   81 (323)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhcccccc-CCcEEecChHHHhCCCC
Confidence            45899999999999999999998874       78888885422100     0000000000 01000012245678999


Q ss_pred             EeEEccccCC----CCccchhhhHHHHHHHHHHHHHcCC-CEEEEEec
Q 028890          124 AVISCVGGFG----SNSYMYKINGTANINAIRAASEKGV-KRFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~-~~~v~~SS  166 (202)
                      +||.+||...    +....+..|..-...+++.+.+.+. +.++.+-|
T Consensus        82 vVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  129 (323)
T TIGR01759        82 AALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG  129 (323)
T ss_pred             EEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            9999999643    2245667788888888888888875 54544444

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.89  E-value=0.00027  Score=57.85  Aligned_cols=107  Identities=16%  Similarity=0.194  Sum_probs=70.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc-ccCC--CceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR-DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~-~~~~--~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ||.|+|++|.+|.+++-.|+.++.  ++.++++++..... ...+  ....+....  +.+++.+.++++|+||.+||..
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~--~~~~~~~~~~daDivvitaG~~   78 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFS--GEEGLENALKGADVVVIPAGVP   78 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEec--CCCchHHHcCCCCEEEEeCCCC
Confidence            689999999999999999988875  78888886622100 0111  111111101  1123456889999999999964


Q ss_pred             C----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          133 G----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       133 ~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .    .....+..|..-...+++...+.+.+.++.+-|
T Consensus        79 ~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs  116 (312)
T TIGR01772        79 RKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT  116 (312)
T ss_pred             CCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence            3    224566778888888888888877665554444

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.85  E-value=0.00011  Score=60.92  Aligned_cols=96  Identities=16%  Similarity=0.199  Sum_probs=58.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcc-cccCCCceeEE-EccCCCHhhHHHHhcCccEeEEccccC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSL-RDSWANNVIWH-QGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~-~~~~~~~~~~~-~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      |++|+|.||+|++|+.+++.|.+. ++++.++.++..... .....+++..+ ..++.+.+..  .++++|+||.|.+. 
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~vD~Vf~alP~-   78 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPE--ILAGADVVFLALPH-   78 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHH--HhcCCCEEEECCCc-
Confidence            579999999999999999999987 578877665322211 10001112111 1233333332  45689999998854 


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                                 ..+..++..+.+.| +++|=.|+
T Consensus        79 -----------~~~~~~v~~a~~aG-~~VID~S~  100 (343)
T PRK00436         79 -----------GVSMDLAPQLLEAG-VKVIDLSA  100 (343)
T ss_pred             -----------HHHHHHHHHHHhCC-CEEEECCc
Confidence                       22334556666666 47777776

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=97.85  E-value=3.9e-05  Score=71.01  Aligned_cols=139  Identities=19%  Similarity=0.263  Sum_probs=94.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc-----ccccCCC-c--eeEEEccCCCHhhHHHHhcC----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS-----LRDSWAN-N--VIWHQGNLLSSDSWKEALDG----  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~-----~~~~~~~-~--~~~~~~D~~~~~~~~~~~~~----  121 (202)
                      ..+.++|+||-|+.|..|++.|..+|. +++..+|+.-+.     ....|.. +  +.+-.-|++..+....+++.    
T Consensus      1767 peksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsGirtGYQa~~vrrWr~~GVqV~vsT~nitt~~ga~~Li~~s~kl 1846 (2376)
T KOG1202|consen 1767 PEKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSGIRTGYQALMVRRWRRRGVQVQVSTSNITTAEGARGLIEESNKL 1846 (2376)
T ss_pred             ccceEEEeccccchhHHHHHHHHhcCceEEEEeccccchhhHHHHHHHHHHhcCeEEEEecccchhhhhHHHHHHHhhhc
Confidence            457899999999999999999999998 555566765431     1112222 2  33333455555555555543    


Q ss_pred             --ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 --VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 --~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                        +-.|||.|....+          ....-+..+.|+.++=+..++.-  .+-||.+||...|..+...+.||.+..++|
T Consensus      1847 ~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN~GQtNYG~aNS~ME 1926 (2376)
T KOG1202|consen 1847 GPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGNAGQTNYGLANSAME 1926 (2376)
T ss_pred             ccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCCCcccccchhhHHHH
Confidence              5677888774321          12223445677777666665542  578999999777888888899999999999


Q ss_pred             HHHHHh
Q 028890          188 DVAACQ  193 (202)
Q Consensus       188 ~~~~~~  193 (202)
                      +++..-
T Consensus      1927 RiceqR 1932 (2376)
T KOG1202|consen 1927 RICEQR 1932 (2376)
T ss_pred             HHHHHh
Confidence            999863

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.84  E-value=0.00033  Score=49.22  Aligned_cols=91  Identities=15%  Similarity=0.287  Sum_probs=52.8

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-eEEE-EecCCCC--cccccCC--Ccee-EEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-TVAS-LSRSGRS--SLRDSWA--NNVI-WHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~-l~r~~~~--~~~~~~~--~~~~-~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ||.|.||||++|+.+++.|.+... ++.. +.++...  ......+  .... ....| .+.+    .+.++|+||.|.+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~Dvvf~a~~   75 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVED-ADPE----ELSDVDVVFLALP   75 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEE-TSGH----HHTTESEEEE-SC
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEee-cchh----HhhcCCEEEecCc
Confidence            689999999999999999999753 6544 4444412  1111111  1111 11112 2233    2378999999986


Q ss_pred             cCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .....+.+.+.+.|+ ++|=.|+
T Consensus        76 ~------------~~~~~~~~~~~~~g~-~ViD~s~   98 (121)
T PF01118_consen   76 H------------GASKELAPKLLKAGI-KVIDLSG   98 (121)
T ss_dssp             H------------HHHHHHHHHHHHTTS-EEEESSS
T ss_pred             h------------hHHHHHHHHHhhCCc-EEEeCCH
Confidence            4            222345666677776 6665555

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK05442 malate dehydrogenase; Provisional

Probab=97.82  E-value=0.0003  Score=57.91  Aligned_cols=104  Identities=12%  Similarity=0.081  Sum_probs=68.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCcccc-----cC------CCceeEEEccCCCHhhHH
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLRD-----SW------ANNVIWHQGNLLSSDSWK  116 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~~~-----~~------~~~~~~~~~D~~~~~~~~  116 (202)
                      .++||.|+|++|.+|..++..|+..|.       ++..++..+......     ..      ..++.+     .  ..-.
T Consensus         3 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i-----~--~~~y   75 (326)
T PRK05442          3 APVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI-----T--DDPN   75 (326)
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE-----e--cChH
Confidence            456999999999999999999988663       688888754321100     00      011111     1  1224


Q ss_pred             HHhcCccEeEEccccCC----CCccchhhhHHHHHHHHHHHHHcC-CC-EEEEEe
Q 028890          117 EALDGVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKG-VK-RFVYIS  165 (202)
Q Consensus       117 ~~~~~~d~vi~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~-~~-~~v~~S  165 (202)
                      +.++++|+||.+||...    +..+.+..|..-...+.+...++. .+ .++.+|
T Consensus        76 ~~~~daDiVVitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs  130 (326)
T PRK05442         76 VAFKDADVALLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG  130 (326)
T ss_pred             HHhCCCCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence            66789999999999643    224456778888888888888844 34 455554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.80  E-value=0.00024  Score=58.03  Aligned_cols=107  Identities=20%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc--ccCC--CceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR--DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~--~~~~--~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +||.|+|++|.+|.+++-.|..+|.  ++.+++.+ .....  ...+  ....+...  ...+++.+.++++|+||.+||
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~a~g~alDL~~~~~~~~i~~~--~~~~~~y~~~~daDivvitaG   77 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-NTPGVAADLSHINTPAKVTGY--LGPEELKKALKGADVVVIPAG   77 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-ccceeehHhHhCCCcceEEEe--cCCCchHHhcCCCCEEEEeCC
Confidence            5899999999999999999988874  88888876 21111  0111  11111111  012335677889999999999


Q ss_pred             cCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          131 GFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       131 ~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ....    ....++.|..-...+++...+.+.+-++.+=|
T Consensus        78 ~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt  117 (310)
T cd01337          78 VPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS  117 (310)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            7432    24566778888888888888877664444433

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.80  E-value=2.6e-05  Score=56.03  Aligned_cols=75  Identities=16%  Similarity=0.189  Sum_probs=53.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCe-EEEEecCCCCccc--ccC-CCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSLR--DSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l~r~~~~~~~--~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      ..++++++|.|+ |+.|+.++..|...|.+ |++++|+..+...  ... ...+.++..     +++.+.+.++|+||++
T Consensus         9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~-----~~~~~~~~~~DivI~a   82 (135)
T PF01488_consen    9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPL-----EDLEEALQEADIVINA   82 (135)
T ss_dssp             TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEG-----GGHCHHHHTESEEEE-
T ss_pred             CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeH-----HHHHHHHhhCCeEEEe
Confidence            457899999998 99999999999999985 9999998654211  111 123444433     3344677889999999


Q ss_pred             cccCC
Q 028890          129 VGGFG  133 (202)
Q Consensus       129 a~~~~  133 (202)
                      .+...
T Consensus        83 T~~~~   87 (135)
T PF01488_consen   83 TPSGM   87 (135)
T ss_dssp             SSTTS
T ss_pred             cCCCC
Confidence            87543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.78  E-value=0.00031  Score=55.95  Aligned_cols=68  Identities=16%  Similarity=0.200  Sum_probs=46.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-CCeEEEEe-cCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~-r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++|.|+|++|.+|+.+++.+.+. +.++.++. +++... ...       -..++...++++++++++|+||.+..+
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~-~~~-------~~~~i~~~~dl~~ll~~~DvVid~t~p   70 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPL-VGQ-------GALGVAITDDLEAVLADADVLIDFTTP   70 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccc-ccc-------CCCCccccCCHHHhccCCCEEEECCCH
Confidence            368999999999999999998875 67877654 443321 111       112333445567777789999988854

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.77  E-value=0.00045  Score=56.45  Aligned_cols=101  Identities=14%  Similarity=0.194  Sum_probs=68.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccccc---------CCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDS---------WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~~~---------~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      ++|.|.|+ |.+|+.++..|+..|  +++++++|+.+......         ......+..   .+.    +.+.++|+|
T Consensus         1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~---~~~----~~l~~aDIV   72 (306)
T cd05291           1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKA---GDY----SDCKDADIV   72 (306)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEc---CCH----HHhCCCCEE
Confidence            47999997 999999999999998  58999999765421100         011222222   122    235799999


Q ss_pred             EEccccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |.++|....    ....++.|..-...+.+.+++.+.+ .++.+|
T Consensus        73 Iitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          73 VITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             EEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            999996432    2356677777778888888887755 444444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=97.75  E-value=0.00026  Score=58.62  Aligned_cols=68  Identities=15%  Similarity=0.336  Sum_probs=44.8

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeE---EEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTV---ASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V---~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +|+|.||+|++|..|++.|.+++|.+   ..+.+.......... .+......|+. .    ..++++|++|.++|.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~-~~~~~~~~~~~-~----~~~~~~D~v~~a~g~   71 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTF-KGKELEVNEAK-I----ESFEGIDIALFSAGG   71 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeee-CCeeEEEEeCC-h----HHhcCCCEEEECCCH
Confidence            58999999999999999999988754   344454332111111 22445555653 2    234789999999975

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.73  E-value=0.00018  Score=59.78  Aligned_cols=95  Identities=16%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-CCeEEEE-ecCCC--CcccccCCCceeEE-EccCCCHhhHHHHhcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGR--SSLRDSWANNVIWH-QGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l-~r~~~--~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ++|.|.||||++|..+++.|.+. ++++..+ +++..  +..... .+.+... ..++.+. +.+++++++|+||.|.+.
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~-~~~l~~~~~~~~~~~-~~~~~~~~~DvVf~alP~   78 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEV-HPHLRGLVDLNLEPI-DEEEIAEDADVVFLALPH   78 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHh-CccccccCCceeecC-CHHHhhcCCCEEEECCCc
Confidence            48999999999999999999987 5687744 43321  111110 1111111 1112211 223444589999999864


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .+..++..+.+.| +++|=.|+
T Consensus        79 ~------------~s~~~~~~~~~~G-~~VIDlS~  100 (346)
T TIGR01850        79 G------------VSAELAPELLAAG-VKVIDLSA  100 (346)
T ss_pred             h------------HHHHHHHHHHhCC-CEEEeCCh
Confidence            2            3345566666666 58888887

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=97.72  E-value=0.0012  Score=54.25  Aligned_cols=104  Identities=13%  Similarity=0.209  Sum_probs=70.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------cc--CCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      ..++||.|+|+ |.+|..++..|+..|.  ++..++++.+....      ..  ...++.+...   +   + +.++++|
T Consensus         4 ~~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~---~---~-~~~~~ad   75 (315)
T PRK00066          4 KQHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAG---D---Y-SDCKDAD   75 (315)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeC---C---H-HHhCCCC
Confidence            35679999998 9999999999999886  89999987654211      10  1122222221   2   2 3468999


Q ss_pred             EeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 028890          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (202)
Q Consensus       124 ~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~-~v~~S  165 (202)
                      +||..||....    ....+..|..-...+++.+++.+.+- ++.+|
T Consensus        76 ivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         76 LVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            99999996432    24566778777778888888877654 44444

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=97.67  E-value=0.0012  Score=47.14  Aligned_cols=97  Identities=21%  Similarity=0.338  Sum_probs=65.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--c-c---------------------ccCCC--ceeEEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L-R---------------------DSWAN--NVIWHQGN  108 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~-~---------------------~~~~~--~~~~~~~D  108 (202)
                      .++|+|.|+ |.+|+.+++.|...|. ++++++.+.-..  . .                     ....+  +++.+..+
T Consensus         2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~   80 (135)
T PF00899_consen    2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK   80 (135)
T ss_dssp             T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred             CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence            468999998 9999999999999998 788888653210  0 0                     00123  45556666


Q ss_pred             CCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      + +.+.+.+.++++|+||.|...           ......+-+.|++.+. .+|+.+.
T Consensus        81 ~-~~~~~~~~~~~~d~vi~~~d~-----------~~~~~~l~~~~~~~~~-p~i~~~~  125 (135)
T PF00899_consen   81 I-DEENIEELLKDYDIVIDCVDS-----------LAARLLLNEICREYGI-PFIDAGV  125 (135)
T ss_dssp             C-SHHHHHHHHHTSSEEEEESSS-----------HHHHHHHHHHHHHTT--EEEEEEE
T ss_pred             c-ccccccccccCCCEEEEecCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            6 556678888899999998643           1222345667888775 7777765

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.66  E-value=0.0019  Score=53.14  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccc---------cCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD---------SWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      +.+.+||.|+|+ |.+|..++..++..|. +|++++.+++.....         .......+...  .|   + +.++++
T Consensus         3 ~~~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~--~d---~-~~l~~a   75 (321)
T PTZ00082          3 MIKRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGT--NN---Y-EDIAGS   75 (321)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEEC--CC---H-HHhCCC
Confidence            345679999996 9999999999999995 889999877642100         00112222210  12   3 356899


Q ss_pred             cEeEEccccCCCCc---------cchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          123 TAVISCVGGFGSNS---------YMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~~~---------~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      |+||.++|....+.         ..+..|..-...+++.+.+...+ .++.+|.
T Consensus        76 DiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN  129 (321)
T PTZ00082         76 DVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN  129 (321)
T ss_pred             CEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999998643221         23455666666777777777665 5666654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.65  E-value=5.4e-05  Score=55.27  Aligned_cols=76  Identities=14%  Similarity=0.064  Sum_probs=50.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .++++++|+|+ |.+|..+++.|.+.| ++|++.+|+...........+...+..+..+.   .+.++++|+||.+.+..
T Consensus        17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~Dvvi~~~~~~   92 (155)
T cd01065          17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDL---EELLAEADLIINTTPVG   92 (155)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecch---hhccccCCEEEeCcCCC
Confidence            45679999998 999999999999996 78999998754321110000111112233333   34468899999999764


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      .
T Consensus        93 ~   93 (155)
T cd01065          93 M   93 (155)
T ss_pred             C
Confidence            3

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=97.63  E-value=0.0011  Score=54.96  Aligned_cols=69  Identities=22%  Similarity=0.372  Sum_probs=43.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC---eEEEEe--cCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLS--RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~--r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ..++|.|.||+|++|..+++.|.+++|   ++..+.  |+..+....   .+......++ ++    +.++++|+||.++
T Consensus         6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~---~~~~~~v~~~-~~----~~~~~~D~vf~a~   77 (344)
T PLN02383          6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTF---EGRDYTVEEL-TE----DSFDGVDIALFSA   77 (344)
T ss_pred             CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeee---cCceeEEEeC-CH----HHHcCCCEEEECC
Confidence            456899999999999999999999777   444443  222222111   1122222233 22    2346899999988


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      +.
T Consensus        78 p~   79 (344)
T PLN02383         78 GG   79 (344)
T ss_pred             Cc
Confidence            64

>COG4982 3-oxoacyl-[acyl-carrier protein]

Probab=97.61  E-value=0.0017  Score=56.84  Aligned_cols=141  Identities=16%  Similarity=0.103  Sum_probs=86.9

Q ss_pred             CCCeEEEEccC-ChhHHHHHHHHHHCCCeEEEEecCCCCccc---------c-cCCCceeEEEccCCCHhhHHHHhc---
Q 028890           55 PSEKLLVLGGN-GFVGSHICREALDRGLTVASLSRSGRSSLR---------D-SWANNVIWHQGNLLSSDSWKEALD---  120 (202)
Q Consensus        55 ~~~~vlVtGa~-G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---------~-~~~~~~~~~~~D~~~~~~~~~~~~---  120 (202)
                      ..+.++||||+ |.||.+++..|+..|.+|+++..+-+++..         . .....+-++..+.....+++.+++   
T Consensus       395 ~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s~~r~efyr~LYa~~a~~ga~LwvVpaN~~SysDVdAlIewIg  474 (866)
T COG4982         395 GDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWVVPANMGSYSDVDALIEWIG  474 (866)
T ss_pred             ccceEEEecCCCcchHHHHHHHHHhCCcEEEEEcccccHHHHHHHHHHHHhhCCCCceEEEEeccccchhhHHHHHHHhc
Confidence            56789999975 889999999999999999998765443211         0 112234456667666555555553   


Q ss_pred             ------------------CccEeEEccccCCC---------CccchhhhHHHHHHHHHHHHHcC----CC---EEEEEec
Q 028890          121 ------------------GVTAVISCVGGFGS---------NSYMYKINGTANINAIRAASEKG----VK---RFVYISA  166 (202)
Q Consensus       121 ------------------~~d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~~~~----~~---~~v~~SS  166 (202)
                                        .+|.+|-.|++...         .+..+++-+....+++-..++.+    +.   ++|+-.|
T Consensus       475 ~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl~~~~s~r~v~~R~hVVLPgS  554 (866)
T COG4982         475 DEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGLKKQGSSRGVDTRLHVVLPGS  554 (866)
T ss_pred             cccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHhhhhccccCcccceEEEecCC
Confidence                              14677777665321         12234444555556666665543    21   4555555


Q ss_pred             cccCcCCcCCcchHHHHHHHHHHHHHhccc
Q 028890          167 ADFGVANYLLQGYYEGKVLSSDVAACQSVL  196 (202)
Q Consensus       167 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~l  196 (202)
                      --.|. -.....|+.+|...|.++..|+..
T Consensus       555 PNrG~-FGgDGaYgEsK~aldav~~RW~sE  583 (866)
T COG4982         555 PNRGM-FGGDGAYGESKLALDAVVNRWHSE  583 (866)
T ss_pred             CCCCc-cCCCcchhhHHHHHHHHHHHhhcc
Confidence            21111 112357999999999999888643

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.61  E-value=0.00081  Score=55.72  Aligned_cols=99  Identities=11%  Similarity=0.230  Sum_probs=66.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc------------------------ccCCC--ceeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR------------------------DSWAN--NVIW  104 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~------------------------~~~~~--~~~~  104 (202)
                      .+.++|+|.|+ |++|+++++.|...|. ++++++++.-..  ..                        ...++  .++.
T Consensus        22 L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~  100 (338)
T PRK12475         22 IREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVP  100 (338)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEE
Confidence            35679999998 8999999999999997 888888874110  00                        00122  3455


Q ss_pred             EEccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          105 HQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       105 ~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +..|++ .+.++++++++|+||-+...       ++.    -..+-+.|.+.++ .+|+.+.
T Consensus       101 ~~~~~~-~~~~~~~~~~~DlVid~~D~-------~~~----r~~in~~~~~~~i-p~i~~~~  149 (338)
T PRK12475        101 VVTDVT-VEELEELVKEVDLIIDATDN-------FDT----RLLINDLSQKYNI-PWIYGGC  149 (338)
T ss_pred             EeccCC-HHHHHHHhcCCCEEEEcCCC-------HHH----HHHHHHHHHHcCC-CEEEEEe
Confidence            566664 55688888999999988742       111    1234467777775 5666654

>PRK04148 hypothetical protein; Provisional

Probab=97.61  E-value=0.00059  Score=48.71  Aligned_cols=94  Identities=12%  Similarity=0.111  Sum_probs=69.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      +++++++.|. | .|.+++..|.+.|++|++++.++... .......+.++.+|+.+++  .++-+++|.|+.+=.+   
T Consensus        16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~aV-~~a~~~~~~~v~dDlf~p~--~~~y~~a~liysirpp---   87 (134)
T PRK04148         16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKAV-EKAKKLGLNAFVDDLFNPN--LEIYKNAKLIYSIRPP---   87 (134)
T ss_pred             cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHHH-HHHHHhCCeEEECcCCCCC--HHHHhcCCEEEEeCCC---
Confidence            4578999997 6 89999999999999999999887642 1122346789999999887  4556789998776543   


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                              ..-+..+++.+++.++.-+|.-
T Consensus        88 --------~el~~~~~~la~~~~~~~~i~~  109 (134)
T PRK04148         88 --------RDLQPFILELAKKINVPLIIKP  109 (134)
T ss_pred             --------HHHHHHHHHHHHHcCCCEEEEc
Confidence                    1233456888888887655543

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.59  E-value=0.00084  Score=55.62  Aligned_cols=99  Identities=17%  Similarity=0.271  Sum_probs=66.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc------------------------ccCCC--ceeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR------------------------DSWAN--NVIW  104 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~------------------------~~~~~--~~~~  104 (202)
                      .+..+|+|.|+ |++|+++++.|...|. ++++++++.-..  ..                        ...++  .++.
T Consensus        22 L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~  100 (339)
T PRK07688         22 LREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEA  100 (339)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEE
Confidence            35679999998 9999999999999998 899998864110  00                        00123  3445


Q ss_pred             EEccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          105 HQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       105 ~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +..++. ++.+.+++++.|+||.+...           ......+-++|.+.++ .+|+.+.
T Consensus       101 ~~~~~~-~~~~~~~~~~~DlVid~~Dn-----------~~~r~~ln~~~~~~~i-P~i~~~~  149 (339)
T PRK07688        101 IVQDVT-AEELEELVTGVDLIIDATDN-----------FETRFIVNDAAQKYGI-PWIYGAC  149 (339)
T ss_pred             EeccCC-HHHHHHHHcCCCEEEEcCCC-----------HHHHHHHHHHHHHhCC-CEEEEee
Confidence            555653 55677888899999988542           1222345677777774 6777665

>KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion]

Probab=97.56  E-value=0.0012  Score=52.56  Aligned_cols=112  Identities=18%  Similarity=0.114  Sum_probs=71.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEE---EEecCCCC-cccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRS-SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~---~l~r~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ..+.||.|.||.|+||+-|.-.| +....|.   .-+-...+ ......+-+.......+.-++.++.+++++|+||--|
T Consensus        26 ~~~~KVAvlGAaGGIGQPLSLLl-K~np~Vs~LaLYDi~~~~GVaaDlSHI~T~s~V~g~~g~~~L~~al~~advVvIPA  104 (345)
T KOG1494|consen   26 QRGLKVAVLGAAGGIGQPLSLLL-KLNPLVSELALYDIANTPGVAADLSHINTNSSVVGFTGADGLENALKGADVVVIPA  104 (345)
T ss_pred             cCcceEEEEecCCccCccHHHHH-hcCcccceeeeeecccCCcccccccccCCCCceeccCChhHHHHHhcCCCEEEecC
Confidence            35679999999999999986554 4443332   22222111 1111111122222234455778999999999999999


Q ss_pred             ccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          130 GGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       130 ~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      |....    .++.|++|.--...+..++.+.-.+ .+.++|.
T Consensus       105 GVPRKPGMTRDDLFn~NAgIv~~l~~aia~~cP~A~i~vIsN  146 (345)
T KOG1494|consen  105 GVPRKPGMTRDDLFNINAGIVKTLAAAIAKCCPNALILVISN  146 (345)
T ss_pred             CCCCCCCCcHHHhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence            97553    3678899988888888888776544 4555554

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.56  E-value=0.00014  Score=51.44  Aligned_cols=94  Identities=18%  Similarity=0.263  Sum_probs=55.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHH-CCCeEEEE-ecCCCCcccccC--CCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           57 EKLLVLGGNGFVGSHICREALD-RGLTVASL-SRSGRSSLRDSW--ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~-~g~~V~~l-~r~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ++|+|.|++|.+|+.+++.+.+ .++++.+. +|+++.......  -.+..  ...+.-.++++++++.+|++|.+..+ 
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~--~~~~~v~~~l~~~~~~~DVvIDfT~p-   77 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIG--PLGVPVTDDLEELLEEADVVIDFTNP-   77 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSS--T-SSBEBS-HHHHTTH-SEEEEES-H-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcC--CcccccchhHHHhcccCCEEEEcCCh-
Confidence            5899999999999999999999 57886654 555422111000  00000  01111125677888889999987743 


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEe
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~S  165 (202)
                                 ......++.+.++++ .+|.-+
T Consensus        78 -----------~~~~~~~~~~~~~g~-~~ViGT   98 (124)
T PF01113_consen   78 -----------DAVYDNLEYALKHGV-PLVIGT   98 (124)
T ss_dssp             -----------HHHHHHHHHHHHHT--EEEEE-
T ss_pred             -----------HHhHHHHHHHHhCCC-CEEEEC
Confidence                       344456778888775 455433

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.56  E-value=0.00062  Score=58.40  Aligned_cols=101  Identities=18%  Similarity=0.258  Sum_probs=70.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHH-HhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~-~~~~~d~vi~~a~~  131 (202)
                      ..+++++|.|+ |.+|+.+++.|.+.|++|++++++++..... ....++.++.+|..+++.+.+ .++++|.||.+...
T Consensus       229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~  307 (453)
T PRK09496        229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND  307 (453)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence            45789999998 9999999999999999999999886542111 112467889999999998865 44578998866542


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .       ..|...    ...+++.+..+++....
T Consensus       308 ~-------~~n~~~----~~~~~~~~~~~ii~~~~  331 (453)
T PRK09496        308 D-------EANILS----SLLAKRLGAKKVIALVN  331 (453)
T ss_pred             c-------HHHHHH----HHHHHHhCCCeEEEEEC
Confidence            1       234332    22445556666665554

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.55  E-value=0.00064  Score=55.89  Aligned_cols=110  Identities=13%  Similarity=0.184  Sum_probs=68.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccc---cCC-CceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRD---SWA-NNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~---~~~-~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      +.++|.|+|| |.+|..++..|...| .+++.++++++.....   ... ....-....+....+++ .++++|+||.++
T Consensus         4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            5679999997 999999999999888 6888899876432110   000 00000000111112344 668999999999


Q ss_pred             ccCCCC----ccchhhhHHHHHHHHHHHHHcCCCE-EEEEec
Q 028890          130 GGFGSN----SYMYKINGTANINAIRAASEKGVKR-FVYISA  166 (202)
Q Consensus       130 ~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~-~v~~SS  166 (202)
                      |....+    .+.+..|..-...+++.+.+...+. ++++|.
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            864422    3345566666667777777776555 666654

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=97.55  E-value=0.00074  Score=46.76  Aligned_cols=70  Identities=17%  Similarity=0.314  Sum_probs=53.1

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      |+|.|. |.+|..+++.|.+.+.+|+++++++... ......++.++.+|..|++.+.++ +++++.+|-+..
T Consensus         1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~~-~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPERV-EELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHHH-HHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHHH-HHHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence            578887 8999999999999777999999886542 112224588999999999998874 456888877764

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.54  E-value=0.00042  Score=51.60  Aligned_cols=58  Identities=26%  Similarity=0.320  Sum_probs=48.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...+++++|.|+++.+|..+++.|.++|.+|+++.|+.                      +++.+.+.++|+||.+.+..
T Consensus        41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~----------------------~~l~~~l~~aDiVIsat~~~   98 (168)
T cd01080          41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT----------------------KNLKEHTKQADIVIVAVGKP   98 (168)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc----------------------hhHHHHHhhCCEEEEcCCCC
Confidence            46889999999966679999999999999999888862                      34567788999999998764

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=97.49  E-value=0.0011  Score=54.01  Aligned_cols=104  Identities=17%  Similarity=0.178  Sum_probs=69.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccccc--CCCce------eEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDS--WANNV------IWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~~~--~~~~~------~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +||.|+|+ |++|+.++-.|+.++  .+++.++..........  .....      ..+.+| .+    .+.+++.|+|+
T Consensus         1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~-~~----y~~~~~aDiVv   74 (313)
T COG0039           1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGD-GD----YEDLKGADIVV   74 (313)
T ss_pred             CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecC-CC----hhhhcCCCEEE
Confidence            58999999 999999999998775  38999998843311100  00011      122222 11    34567999999


Q ss_pred             EccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          127 SCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       127 ~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      -.||....    ..+.++.|..-...+.+...+.+.+-++++-|
T Consensus        75 itAG~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt  118 (313)
T COG0039          75 ITAGVPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT  118 (313)
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence            99996442    34567788888888888888877665555554

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.46  E-value=0.0012  Score=55.03  Aligned_cols=35  Identities=26%  Similarity=0.385  Sum_probs=29.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~   90 (202)
                      +++|+|+||+|++|+.+++.|.+... +++.+.++.
T Consensus         3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~   38 (349)
T PRK08664          3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAASE   38 (349)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcCh
Confidence            57999999999999999999998765 888885554

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.37  E-value=0.00057  Score=57.41  Aligned_cols=36  Identities=22%  Similarity=0.434  Sum_probs=33.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      +..++|.|.||.|.+|..+++.|.++|++|++.+|+
T Consensus        96 ~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~  131 (374)
T PRK11199         96 PDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD  131 (374)
T ss_pred             cccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence            356899999999999999999999999999999985

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.37  E-value=0.0044  Score=47.54  Aligned_cols=99  Identities=14%  Similarity=0.249  Sum_probs=65.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCcee--EEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANNVI--WHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~~~--~~~  106 (202)
                      ....+|+|.|+ |++|+++++.|...|. ++++++.+.-..  ..                      ....+.++  .+.
T Consensus        19 l~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~   97 (202)
T TIGR02356        19 LLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALK   97 (202)
T ss_pred             hcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEeh
Confidence            46679999997 9999999999999997 888888763110  00                      01123333  333


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .++ +++.+.+.++++|+||.+....           ..-..+-+.|++.++ .+|+.+.
T Consensus        98 ~~i-~~~~~~~~~~~~D~Vi~~~d~~-----------~~r~~l~~~~~~~~i-p~i~~~~  144 (202)
T TIGR02356        98 ERV-TAENLELLINNVDLVLDCTDNF-----------ATRYLINDACVALGT-PLISAAV  144 (202)
T ss_pred             hcC-CHHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            334 4456778889999999887431           122234567777774 6777665

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.36  E-value=0.007  Score=46.40  Aligned_cols=73  Identities=10%  Similarity=0.119  Sum_probs=51.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecC---CCCcccc--------------------cCCC--ceeEEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRS---GRSSLRD--------------------SWAN--NVIWHQG  107 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~---~~~~~~~--------------------~~~~--~~~~~~~  107 (202)
                      .+..+|+|.|+ |++|+.++..|...|. ++++++++   ......+                    ...+  +++.+..
T Consensus        19 L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~   97 (200)
T TIGR02354        19 LEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE   97 (200)
T ss_pred             HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence            35679999998 9999999999999998 79998887   2211000                    0012  3344444


Q ss_pred             cCCCHhhHHHHhcCccEeEEc
Q 028890          108 NLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      ++ +.+.+.+++.++|+||-+
T Consensus        98 ~i-~~~~~~~~~~~~DlVi~a  117 (200)
T TIGR02354        98 KI-TEENIDKFFKDADIVCEA  117 (200)
T ss_pred             eC-CHhHHHHHhcCCCEEEEC
Confidence            55 356677888889999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.35  E-value=0.00027  Score=57.26  Aligned_cols=71  Identities=23%  Similarity=0.201  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ...+++++|+|. |.+|+.+++.|...|++|++.+|+...... ....+...+     +.+++.+.++++|+||++..
T Consensus       148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~~~~~~-~~~~g~~~~-----~~~~l~~~l~~aDiVint~P  218 (287)
T TIGR02853       148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSSADLAR-ITEMGLIPF-----PLNKLEEKVAEIDIVINTIP  218 (287)
T ss_pred             CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHCCCeee-----cHHHHHHHhccCCEEEECCC
Confidence            456789999998 899999999999999999999997643211 111122211     24557778889999999874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=97.35  E-value=0.0064  Score=49.75  Aligned_cols=101  Identities=16%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------c--cCC--CceeEEEccCCCHhhHHHHhcCccEe
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D--SWA--NNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~--~~~--~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      ||.|.|+ |.+|..++..|+.+|.  +++.++.+.+....      +  ...  .++.+...|       .+.++++|+|
T Consensus         1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~-------y~~~~~aDiv   72 (307)
T cd05290           1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGD-------YDDCADADII   72 (307)
T ss_pred             CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECC-------HHHhCCCCEE
Confidence            5889998 9999999999998875  78999986543211      1  111  133443333       3466899999


Q ss_pred             EEccccCCCC------ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGSN------SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~~------~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |-+||....+      .+.+..|..-...+++.+.+.+.+-++.+-|
T Consensus        73 vitaG~~~kpg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvs  119 (307)
T cd05290          73 VITAGPSIDPGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILIT  119 (307)
T ss_pred             EECCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence            9999964321      4556778888888888888888665555544

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=97.35  E-value=0.0066  Score=47.88  Aligned_cols=99  Identities=15%  Similarity=0.162  Sum_probs=62.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCcee--EEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANNVI--WHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~~~--~~~  106 (202)
                      .+..+|+|.|+ |++|+.+++.|...|. ++++++.+.-..  ..                      ...++.++  .+.
T Consensus        22 L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~  100 (240)
T TIGR02355        22 LKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPIN  100 (240)
T ss_pred             HhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEe
Confidence            35679999998 9999999999999996 788887764221  00                      00123333  333


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..+ +.+.+.++++++|+||.+....           .....+-++|.+.++ .+|+.++
T Consensus       101 ~~i-~~~~~~~~~~~~DlVvd~~D~~-----------~~r~~ln~~~~~~~i-p~v~~~~  147 (240)
T TIGR02355       101 AKL-DDAELAALIAEHDIVVDCTDNV-----------EVRNQLNRQCFAAKV-PLVSGAA  147 (240)
T ss_pred             ccC-CHHHHHHHhhcCCEEEEcCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            223 4456777888899999887431           112234567777764 5565544

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=97.32  E-value=0.0015  Score=53.20  Aligned_cols=73  Identities=26%  Similarity=0.227  Sum_probs=48.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCce-eEEEccCCC-HhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNV-IWHQGNLLS-SDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~~~D~~~-~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+.+++|+|++|.+|.++++.+...|.+|+++.+++...... ..... .++  |..+ .+.+.+. .++|++++++|.
T Consensus       162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~-~~~d~v~~~~g~  236 (332)
T cd08259         162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKIL-KELGADYVI--DGSKFSEDVKKL-GGADVVIELVGS  236 (332)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHH-HHcCCcEEE--ecHHHHHHHHhc-cCCCEEEECCCh
Confidence            467999999999999999999999999999998765432111 00111 112  2211 2223332 279999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=97.32  E-value=0.0048  Score=48.21  Aligned_cols=99  Identities=17%  Similarity=0.239  Sum_probs=64.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc----------------------ccCCC--ceeEEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR----------------------DSWAN--NVIWHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~----------------------~~~~~--~~~~~~  106 (202)
                      ....+|+|.|+ |++|.++++.|...|. +++++|.+.-.  ...                      ....+  +++.+.
T Consensus        19 L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~   97 (228)
T cd00757          19 LKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYN   97 (228)
T ss_pred             HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEec
Confidence            35679999997 9999999999999997 77777654311  000                      00122  344454


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .++ +.+.+.+.++++|+||.|....           ..-..+-+.|.+.++ .+|+.+.
T Consensus        98 ~~i-~~~~~~~~~~~~DvVi~~~d~~-----------~~r~~l~~~~~~~~i-p~i~~g~  144 (228)
T cd00757          98 ERL-DAENAEELIAGYDLVLDCTDNF-----------ATRYLINDACVKLGK-PLVSGAV  144 (228)
T ss_pred             cee-CHHHHHHHHhCCCEEEEcCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            455 3566778888999999987532           112245667777764 5666554

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.30  E-value=0.00098  Score=54.03  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=68.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      .++++.|+|+.| +|.--++.-.+.|++|+++++...+..+....-+.+++..-..|++.++++.+-.|.++|+..... 
T Consensus       181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a-  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLA-  258 (360)
T ss_pred             CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecc-
Confidence            578999999966 998888888788999999999875543333334566655444488989888887888888776321 


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      . ..+       ..++..++..|  ++|+++-
T Consensus       259 ~-~~~-------~~~~~~lk~~G--t~V~vg~  280 (360)
T KOG0023|consen  259 E-HAL-------EPLLGLLKVNG--TLVLVGL  280 (360)
T ss_pred             c-cch-------HHHHHHhhcCC--EEEEEeC
Confidence            0 011       12345555443  7888875

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.27  E-value=0.0022  Score=52.38  Aligned_cols=109  Identities=13%  Similarity=0.163  Sum_probs=64.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccccc---CCC-ceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDS---WAN-NVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~---~~~-~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      |+||.|+|+ |.+|..++..+...|. +|++++++++......   ... ........+....++ +.++++|+||.++|
T Consensus         2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            579999999 9999999999998875 9999998664421100   000 000000011111123 34689999999998


Q ss_pred             cCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          131 GFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       131 ~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      ....+    ...+.-|..-...+++.+.+...+ .+|.+|.
T Consensus        80 ~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tN  120 (307)
T PRK06223         80 VPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTN  120 (307)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            64322    123345566666666766666544 4555553

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.26  E-value=0.0029  Score=54.29  Aligned_cols=73  Identities=18%  Similarity=0.083  Sum_probs=49.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc---cccCCCceeEEEccCCCHhhHHHHhc-CccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---RDSWANNVIWHQGNLLSSDSWKEALD-GVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~vi~~a~  130 (202)
                      ++++++|||++| +|.+.++.|++.|++|++.+++.....   ......++.+..++.  +..   .+. ++|.||.++|
T Consensus         4 ~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~--~~~---~~~~~~d~vV~s~g   77 (447)
T PRK02472          4 QNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSH--PLE---LLDEDFDLMVKNPG   77 (447)
T ss_pred             CCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCC--CHH---HhcCcCCEEEECCC
Confidence            568999999965 999999999999999999987643211   111123455544321  222   233 4999999999


Q ss_pred             cCC
Q 028890          131 GFG  133 (202)
Q Consensus       131 ~~~  133 (202)
                      ...
T Consensus        78 i~~   80 (447)
T PRK02472         78 IPY   80 (447)
T ss_pred             CCC
Confidence            754

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=97.26  E-value=0.00082  Score=54.92  Aligned_cols=34  Identities=15%  Similarity=0.227  Sum_probs=31.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ++|.|+|+ |.+|..++..|+++|++|++.+|++.
T Consensus         3 ~~V~VIG~-G~mG~~iA~~la~~G~~V~v~d~~~~   36 (308)
T PRK06129          3 GSVAIIGA-GLIGRAWAIVFARAGHEVRLWDADPA   36 (308)
T ss_pred             cEEEEECc-cHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence            58999994 99999999999999999999999864

>PRK08223 hypothetical protein; Validated

Probab=97.25  E-value=0.0078  Score=48.57  Aligned_cols=101  Identities=13%  Similarity=0.085  Sum_probs=64.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCc--eeEEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANN--VIWHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~--~~~~~  106 (202)
                      .+..+|+|.|+ |++|+.+++.|...|. +++++|.+.-..  ..                      ...++.  ++.+.
T Consensus        25 L~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~  103 (287)
T PRK08223         25 LRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFP  103 (287)
T ss_pred             HhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            35679999998 9999999999999996 788887663220  00                      011343  34444


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..++ ++.+.++++++|+||.+.-.+         +...-..+-++|.+.++ .+|+.+.
T Consensus       104 ~~l~-~~n~~~ll~~~DlVvD~~D~~---------~~~~r~~ln~~c~~~~i-P~V~~~~  152 (287)
T PRK08223        104 EGIG-KENADAFLDGVDVYVDGLDFF---------EFDARRLVFAACQQRGI-PALTAAP  152 (287)
T ss_pred             cccC-ccCHHHHHhCCCEEEECCCCC---------cHHHHHHHHHHHHHcCC-CEEEEec
Confidence            4443 555778888999998555221         11222345677888774 6666654

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.24  E-value=0.006  Score=52.23  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=70.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-------CC--eEEEEecCCCCccc------cc---CCCceeEEEccCCCHhhHHH
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-------GL--TVASLSRSGRSSLR------DS---WANNVIWHQGNLLSSDSWKE  117 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-------g~--~V~~l~r~~~~~~~------~~---~~~~~~~~~~D~~~~~~~~~  117 (202)
                      .-+|.|+|++|.+|.+++-.|+..       |.  +++.++++.+....      ..   ...++.+...   +    .+
T Consensus       100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~---~----ye  172 (444)
T PLN00112        100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGID---P----YE  172 (444)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecC---C----HH
Confidence            458999999999999999999988       64  78888887654211      00   0112211111   2    35


Q ss_pred             HhcCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHH-cCCC-EEEEEec
Q 028890          118 ALDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASE-KGVK-RFVYISA  166 (202)
Q Consensus       118 ~~~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~-~~~~-~~v~~SS  166 (202)
                      .++++|+||..||....    ..+.++.|..-...+.+...+ .+.. .+|.+|.
T Consensus       173 ~~kdaDiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN  227 (444)
T PLN00112        173 VFQDAEWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN  227 (444)
T ss_pred             HhCcCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC
Confidence            67899999999996432    245667788888888888888 4654 4555543

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.23  E-value=0.0013  Score=53.15  Aligned_cols=57  Identities=16%  Similarity=0.264  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..++++++|.|++|.+|+.++..|+++|+.|+++.|..                      ..+.+.++++|+||++.|.
T Consensus       156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t----------------------~~L~~~~~~aDIvI~AtG~  212 (283)
T PRK14192        156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT----------------------QNLPELVKQADIIVGAVGK  212 (283)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc----------------------hhHHHHhccCCEEEEccCC
Confidence            46789999999988899999999999999998887631                      1245556788999888863

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.23  E-value=0.0017  Score=51.84  Aligned_cols=107  Identities=15%  Similarity=0.059  Sum_probs=66.6

Q ss_pred             EEEEccCChhHHHHHHHHHHCC----CeEEEEecCCCCcccccC--CCceeE-EEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           59 LLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLRDSW--ANNVIW-HQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g----~~V~~l~r~~~~~~~~~~--~~~~~~-~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |.|+|++|.+|..++..|+..|    .++++++++++.......  ..-... ....+.-.+++.+.++++|+||..++.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            5789999999999999999988    689999987644211000  000000 011111122346678899999999986


Q ss_pred             CCCC----ccchhhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 028890          132 FGSN----SYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (202)
Q Consensus       132 ~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~-~v~~S  165 (202)
                      ...+    ......|..-...+++.+++...+- ++.+|
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t  119 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS  119 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            4322    2244556667777788887776554 44443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=97.23  E-value=0.0017  Score=54.46  Aligned_cols=68  Identities=15%  Similarity=0.156  Sum_probs=53.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      +++|+|.|+ |.+|+.++..+.+.|++|++++.++.......   --..+.+|+.|.+.+.++.+.+|+|..
T Consensus         2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~---ad~~~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAAQV---ADEVIVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhHh---CceEEecCCCCHHHHHHHHhcCCEEEe
Confidence            578999998 89999999999999999999987654321111   114566789999999999999998753

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.21  E-value=0.0004  Score=55.99  Aligned_cols=73  Identities=16%  Similarity=0.228  Sum_probs=49.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ...+++++|+|+ |++|++++..|...| .+|++++|+.++...  ...... ..+..+.    ...+.+.++|+||++.
T Consensus       120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~-~~~~~~~----~~~~~~~~~DivInaT  193 (278)
T PRK00258        120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGAL-GKAELDL----ELQEELADFDLIINAT  193 (278)
T ss_pred             CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhc-cceeecc----cchhccccCCEEEECC
Confidence            356789999997 999999999999999 699999998654211  111110 0011111    2235567899999997


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      ..
T Consensus       194 p~  195 (278)
T PRK00258        194 SA  195 (278)
T ss_pred             cC
Confidence            64

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.21  E-value=0.00067  Score=52.03  Aligned_cols=38  Identities=18%  Similarity=0.254  Sum_probs=33.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ..++|+++|+|. |.+|+++++.|.+.|++|++.+++..
T Consensus        25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~~   62 (200)
T cd01075          25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINEE   62 (200)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            457889999998 79999999999999999998887754

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=97.21  E-value=0.00055  Score=55.67  Aligned_cols=70  Identities=17%  Similarity=0.154  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ..+++++|.|. |.+|+.++..|...|++|++.+|++..... ....+.+++     ..+++.+.++++|+||++.+
T Consensus       150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~-~~~~G~~~~-----~~~~l~~~l~~aDiVI~t~p  219 (296)
T PRK08306        150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKSAHLAR-ITEMGLSPF-----HLSELAEEVGKIDIIFNTIP  219 (296)
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHcCCeee-----cHHHHHHHhCCCCEEEECCC
Confidence            46789999997 899999999999999999999998643211 111223332     23456778889999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.19  E-value=0.0013  Score=50.50  Aligned_cols=71  Identities=17%  Similarity=0.281  Sum_probs=49.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC-CCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .++++++|.|| |.+|...++.|++.|++|+++++...+...... ...+.+..-++.     ...++++|+||.+.+
T Consensus         8 l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~-----~~~l~~adlViaaT~   79 (202)
T PRK06718          8 LSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFE-----PSDIVDAFLVIAATN   79 (202)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCC-----hhhcCCceEEEEcCC
Confidence            57889999998 999999999999999999999865433221111 134555543332     223568898887654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=97.19  E-value=0.002  Score=57.49  Aligned_cols=73  Identities=14%  Similarity=0.140  Sum_probs=59.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      ..+|+|.|. |-+|+.+++.|.++|+++++++.+++... .....+..++.+|.+|++.++++ ++++|.+|-+-.
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~-~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~  473 (601)
T PRK03659        400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDISAVN-LMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN  473 (601)
T ss_pred             cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHHHHH-HHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence            468999997 99999999999999999999998866422 22235788999999999988875 457888887764

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.18  E-value=0.00064  Score=58.29  Aligned_cols=68  Identities=21%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |+|.|+||.|.+|.++++.|.+.|++|++.+|++..........++.+       ..+..+.+.++|+||.+..+
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~-------~~~~~e~~~~aDvVIlavp~   68 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY-------ANDNIDAAKDADIVIISVPI   68 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee-------ccCHHHHhccCCEEEEecCH
Confidence            589999999999999999999999999999987643111111112211       11234556778888888753

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=97.17  E-value=0.004  Score=50.96  Aligned_cols=80  Identities=20%  Similarity=0.278  Sum_probs=51.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      +.+|.|.||+|++|..|++.|.++.+ ++..+..+...               |+.+   .+..++++|++|.+.+..  
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------------~~~~---~~~~~~~~DvvFlalp~~--   61 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------------DAAA---RRELLNAADVAILCLPDD--   61 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------------cccC---chhhhcCCCEEEECCCHH--
Confidence            56899999999999999999988874 66666544322               1111   123456799999888531  


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                                ....++..+.+.|+ ++|=.|+
T Consensus        62 ----------~s~~~~~~~~~~g~-~VIDlSa   82 (313)
T PRK11863         62 ----------AAREAVALIDNPAT-RVIDAST   82 (313)
T ss_pred             ----------HHHHHHHHHHhCCC-EEEECCh
Confidence                      11233444445554 6776665

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.15  E-value=0.012  Score=45.44  Aligned_cols=98  Identities=17%  Similarity=0.239  Sum_probs=61.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc-c--------------------cCCC--ceeEEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR-D--------------------SWAN--NVIWHQGN  108 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~-~--------------------~~~~--~~~~~~~D  108 (202)
                      +..+|+|.|+ |++|..+++.|...|. ++++++.+.-.  ... +                    ..++  +++.+...
T Consensus        27 ~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~  105 (212)
T PRK08644         27 KKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK  105 (212)
T ss_pred             hCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee
Confidence            5679999997 9999999999999997 68888876311  000 0                    0122  23334444


Q ss_pred             CCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHc-CCCEEEEEec
Q 028890          109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEK-GVKRFVYISA  166 (202)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS  166 (202)
                      +. .+.+.+.++++|+||.|...           ...-..+.+.|.+. + ..+|+.+.
T Consensus       106 i~-~~~~~~~~~~~DvVI~a~D~-----------~~~r~~l~~~~~~~~~-~p~I~~~~  151 (212)
T PRK08644        106 ID-EDNIEELFKDCDIVVEAFDN-----------AETKAMLVETVLEHPG-KKLVAASG  151 (212)
T ss_pred             cC-HHHHHHHHcCCCEEEECCCC-----------HHHHHHHHHHHHHhCC-CCEEEeeh
Confidence            43 34566778889999988422           11222345666665 5 36666544

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=97.15  E-value=0.0066  Score=50.75  Aligned_cols=94  Identities=17%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-CCe---EEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-GLT---VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-g~~---V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |++|.|.||||++|+.+++.|+++ .+.   ++.+...........+... .....++.+++.    +.++|++|.+++.
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~-~~~v~~~~~~~~----~~~~Divf~a~~~   75 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGK-EGTLQDAFDIDA----LKKLDIIITCQGG   75 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCC-cceEEecCChhH----hcCCCEEEECCCH
Confidence            368999999999999999966665 555   6665543222111111121 222234433333    3679999999974


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      .            ....+...+.+.|.+ .+|=.||
T Consensus        76 ~------------~s~~~~~~~~~aG~~~~VID~Ss   99 (369)
T PRK06598         76 D------------YTNEVYPKLRAAGWQGYWIDAAS   99 (369)
T ss_pred             H------------HHHHHHHHHHhCCCCeEEEECCh
Confidence            1            222445555566653 3444444

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.14  E-value=0.0017  Score=52.65  Aligned_cols=57  Identities=18%  Similarity=0.243  Sum_probs=45.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +..+|+|.|.|.+|.+|+.++..|+++|+.|++..+...                      ++.+..+++|+||.+.|.
T Consensus       156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~----------------------~l~e~~~~ADIVIsavg~  212 (301)
T PRK14194        156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST----------------------DAKALCRQADIVVAAVGR  212 (301)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC----------------------CHHHHHhcCCEEEEecCC
Confidence            457899999999999999999999999999999876532                      244555667777777764

>PRK08328 hypothetical protein; Provisional

Probab=97.14  E-value=0.012  Score=46.17  Aligned_cols=98  Identities=21%  Similarity=0.346  Sum_probs=61.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc-----------------------ccCCCc--eeEEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR-----------------------DSWANN--VIWHQ  106 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~-----------------------~~~~~~--~~~~~  106 (202)
                      +..+|+|.|+ |++|+++++.|...|. ++++++.+.-..  ..                       ...++.  ++.+.
T Consensus        26 ~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~  104 (231)
T PRK08328         26 KKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV  104 (231)
T ss_pred             hCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe
Confidence            5678999998 9999999999999996 788887653210  00                       001122  33333


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..+ +++.+.+++++.|+||.|....           .....+-++|++.++ .+|+.+.
T Consensus       105 ~~~-~~~~~~~~l~~~D~Vid~~d~~-----------~~r~~l~~~~~~~~i-p~i~g~~  151 (231)
T PRK08328        105 GRL-SEENIDEVLKGVDVIVDCLDNF-----------ETRYLLDDYAHKKGI-PLVHGAV  151 (231)
T ss_pred             ccC-CHHHHHHHHhcCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEee
Confidence            344 4555777788889988887431           111234456777774 5666555

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.14  E-value=0.0043  Score=50.73  Aligned_cols=108  Identities=15%  Similarity=0.179  Sum_probs=66.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccc---cCCCc-eeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD---SWANN-VIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~---~~~~~-~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ++|.|.|+ |.+|..++..|+.+|+ +|++++.........   ..... .......+.-..++++ +.++|+||-++|.
T Consensus         2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~   79 (305)
T TIGR01763         2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL   79 (305)
T ss_pred             CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence            58999997 9999999999999886 899999864432100   00000 0000011111112333 5789999999996


Q ss_pred             CCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          132 FGSN----SYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       132 ~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      ...+    .+.+..|..-...+++.+.+.+.+ .+|.+|.
T Consensus        80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN  119 (305)
T TIGR01763        80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN  119 (305)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            4322    234556777777778877776544 4555554

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=97.14  E-value=0.0019  Score=53.65  Aligned_cols=75  Identities=25%  Similarity=0.382  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc----CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~vi~~  128 (202)
                      .++++|||.||+|++|++.++-+...| .+|+........+.....  +.. ...|+.+++-+++..+    ++|+|+.|
T Consensus       156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~~~l~k~l--GAd-~vvdy~~~~~~e~~kk~~~~~~DvVlD~  232 (347)
T KOG1198|consen  156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL--GAD-EVVDYKDENVVELIKKYTGKGVDVVLDC  232 (347)
T ss_pred             CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccchHHHHHHc--CCc-EeecCCCHHHHHHHHhhcCCCccEEEEC
Confidence            357799999999999999999998889 455554443332222111  111 2246777665555554    59999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       233 vg~  235 (347)
T KOG1198|consen  233 VGG  235 (347)
T ss_pred             CCC
Confidence            986

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.13  E-value=0.0019  Score=53.14  Aligned_cols=95  Identities=20%  Similarity=0.204  Sum_probs=62.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      .+++|+|+|. |++|...++.+...|++|++++|++++......-..-.++..  +|++.++.+.+.+|++|.+++ ...
T Consensus       166 pG~~V~I~G~-GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~--~~~~~~~~~~~~~d~ii~tv~-~~~  241 (339)
T COG1064         166 PGKWVAVVGA-GGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINS--SDSDALEAVKEIADAIIDTVG-PAT  241 (339)
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEc--CCchhhHHhHhhCcEEEECCC-hhh
Confidence            4789999998 599999999888899999999999876422111122223322  256655555555999999997 321


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .           ...++.++..|  +++.++-
T Consensus       242 ~-----------~~~l~~l~~~G--~~v~vG~  260 (339)
T COG1064         242 L-----------EPSLKALRRGG--TLVLVGL  260 (339)
T ss_pred             H-----------HHHHHHHhcCC--EEEEECC
Confidence            1           12244554443  7777764

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=97.13  E-value=0.016  Score=44.32  Aligned_cols=99  Identities=18%  Similarity=0.264  Sum_probs=63.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc------------------------ccCCC--ceeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR------------------------DSWAN--NVIWH  105 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~------------------------~~~~~--~~~~~  105 (202)
                      +..+|+|.|+ |++|.++++.|...|. ++++++.+.-.  ...                        ...++  +++.+
T Consensus        18 ~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~   96 (198)
T cd01485          18 RSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIV   96 (198)
T ss_pred             hhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEE
Confidence            5679999998 6699999999999996 68888765321  000                        00123  33444


Q ss_pred             EccCCC-HhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          106 QGNLLS-SDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       106 ~~D~~~-~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..++.+ .+...+.+.++|+||.+-..           ......+-+.|++.++ .+|+.++
T Consensus        97 ~~~~~~~~~~~~~~~~~~dvVi~~~d~-----------~~~~~~ln~~c~~~~i-p~i~~~~  146 (198)
T cd01485          97 EEDSLSNDSNIEEYLQKFTLVIATEEN-----------YERTAKVNDVCRKHHI-PFISCAT  146 (198)
T ss_pred             ecccccchhhHHHHHhCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            444432 44556677889998877432           1222345677888875 6777776

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=97.13  E-value=0.014  Score=47.95  Aligned_cols=103  Identities=16%  Similarity=0.127  Sum_probs=66.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------cc--CCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      .+||.|+|+ |.+|..++..|+..|.  +++.++.+.+....      ..  ......+...  .|   ++ .++++|+|
T Consensus         3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~--~d---y~-~~~~adiv   75 (312)
T cd05293           3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEAD--KD---YS-VTANSKVV   75 (312)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEEC--CC---HH-HhCCCCEE
Confidence            459999997 9999999999988874  78888887643110      00  1111122221  12   23 36899999


Q ss_pred             EEccccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |.+||....    ....+..|..-...+++.+++.+.+ .++.+|
T Consensus        76 vitaG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs  120 (312)
T cd05293          76 IVTAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS  120 (312)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence            999996432    2345567777777778888877655 455444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.13  E-value=0.00085  Score=50.42  Aligned_cols=71  Identities=18%  Similarity=0.115  Sum_probs=49.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...++++.|.|. |.||+.+++.|..-|.+|++.+|....... .....+        ..+++++++..+|+|+.+....
T Consensus        33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~~~~--------~~~~l~ell~~aDiv~~~~plt  102 (178)
T PF02826_consen   33 ELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPKPEEG-ADEFGV--------EYVSLDELLAQADIVSLHLPLT  102 (178)
T ss_dssp             -STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCHHHHH-HHHTTE--------EESSHHHHHHH-SEEEE-SSSS
T ss_pred             ccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCChhhh-cccccc--------eeeehhhhcchhhhhhhhhccc
Confidence            457899999997 999999999999999999999998654220 000111        2235678888999999887654


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      .
T Consensus       103 ~  103 (178)
T PF02826_consen  103 P  103 (178)
T ss_dssp             T
T ss_pred             c
Confidence            3

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=97.12  E-value=0.0089  Score=49.48  Aligned_cols=70  Identities=13%  Similarity=0.133  Sum_probs=42.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCC-cccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRS-SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +.++|.|.||||++|..+++.|.++.|   ++..+...... .........+.+.  |+   +.  ..+.++|++|.+++
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~--~~---~~--~~~~~~Dvvf~a~p   75 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ--DA---AE--FDWSQAQLAFFVAG   75 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE--eC---ch--hhccCCCEEEECCC
Confidence            567999999999999999999998543   66666543221 1111111111111  22   21  12367999999886


Q ss_pred             c
Q 028890          131 G  131 (202)
Q Consensus       131 ~  131 (202)
                      .
T Consensus        76 ~   76 (336)
T PRK08040         76 R   76 (336)
T ss_pred             H
Confidence            4

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.12  E-value=0.0016  Score=54.62  Aligned_cols=75  Identities=17%  Similarity=0.123  Sum_probs=54.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++|+|+ |.+|...++.|...|.+|++++|++.+........+ ..+..+..+++.+.+.+.++|+||.+++.
T Consensus       166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g-~~v~~~~~~~~~l~~~l~~aDvVI~a~~~  240 (370)
T TIGR00518       166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFG-GRIHTRYSNAYEIEDAVKRADLLIGAVLI  240 (370)
T ss_pred             CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcC-ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence            4567999988 999999999999999999999987543211000001 12334556778888889999999999854

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=97.12  E-value=0.0025  Score=52.48  Aligned_cols=76  Identities=20%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH----hhHHHHh-cCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS----DSWKEAL-DGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~----~~~~~~~-~~~d~vi~~a  129 (202)
                      .+.+++|+|++|.+|..+++.+...|.+|+++++++.+.......-++..+ .|..+.    +.+.+.. .++|++|.+.
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~v-i~~~~~~~~~~~i~~~~~~gvd~v~d~~  229 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDA-FNYKEEPDLDAALKRYFPNGIDIYFDNV  229 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCcee-EEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence            567999999999999999998888899999888775432111000122211 232221    2222222 3689999987


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       230 g~  231 (338)
T cd08295         230 GG  231 (338)
T ss_pred             CH
Confidence            63

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=97.12  E-value=0.0022  Score=52.50  Aligned_cols=102  Identities=18%  Similarity=0.212  Sum_probs=65.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccc------cc--CCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      |+|.|.|+ |.+|..++..|+.+|  .+|.+++++......      ..  ......+...   |   . +.++++|++|
T Consensus         1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~---d---~-~~l~~aDiVi   72 (308)
T cd05292           1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAG---D---Y-ADCKGADVVV   72 (308)
T ss_pred             CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeC---C---H-HHhCCCCEEE
Confidence            47999998 999999999999999  589999987643211      00  0011222211   2   2 3478999999


Q ss_pred             EccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       127 ~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+++....+    ......|..-...+++.+++.+.+-++++-+
T Consensus        73 ita~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          73 ITAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            999964322    2334556666667777777766554444433

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.12  E-value=0.0023  Score=51.60  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=48.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...+++++|+|+++.+|+.++..|..+|+.|+++.++.                      ..+.+.++++|+||.+.|..
T Consensus       155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t----------------------~~l~~~~~~ADIVIsAvg~p  212 (286)
T PRK14175        155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS----------------------KDMASYLKDADVIVSAVGKP  212 (286)
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------hhHHHHHhhCCEEEECCCCC
Confidence            45789999999999999999999999999999887642                      13566778899999988864

>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated

Probab=97.10  E-value=0.003  Score=53.23  Aligned_cols=72  Identities=19%  Similarity=0.378  Sum_probs=54.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a  129 (202)
                      +++|+|+|+|+ |..|..++..+.+.|++|++++.++...... ...  .++..|..|.+.+.++.+  ++|.|+...
T Consensus        10 ~~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~~-~ad--~~~~~~~~d~~~l~~~~~~~~id~vi~~~   83 (395)
T PRK09288         10 PSATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQ-VAH--RSHVIDMLDGDALRAVIEREKPDYIVPEI   83 (395)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchHH-hhh--heEECCCCCHHHHHHHHHHhCCCEEEEee
Confidence            35679999997 7899999999999999999998775432111 111  256678889998888887  799888643

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.10  E-value=0.00029  Score=47.16  Aligned_cols=67  Identities=27%  Similarity=0.263  Sum_probs=43.9

Q ss_pred             eEEEEccCChhHHHHHHHHHHCC---CeEEEE-ecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRG---LTVASL-SRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l-~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ||.|.|+ |.+|.+|++.|++.|   ++|+.. .|++++.......-++.+...      +..+++++.|+||.+.-+
T Consensus         1 kI~iIG~-G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~------~~~~~~~~advvilav~p   71 (96)
T PF03807_consen    1 KIGIIGA-GNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATAD------DNEEAAQEADVVILAVKP   71 (96)
T ss_dssp             EEEEEST-SHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESE------EHHHHHHHTSEEEE-S-G
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccC------ChHHhhccCCEEEEEECH
Confidence            5778865 999999999999999   899965 777654322111122222222      235566789999999865

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=97.09  E-value=0.014  Score=46.17  Aligned_cols=99  Identities=18%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCc--eeEEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANN--VIWHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~--~~~~~  106 (202)
                      .+..+|+|.|+ |++|+.+++.|...|. ++++++.+.-..  ..                      ...++.  ++.+.
T Consensus        30 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~  108 (245)
T PRK05690         30 LKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETIN  108 (245)
T ss_pred             hcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            36679999998 9999999999999996 788777653210  00                      011233  33444


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..+ +++.+.+.++++|+||.+....           ..-..+-++|.+.++ .+|+.+.
T Consensus       109 ~~i-~~~~~~~~~~~~DiVi~~~D~~-----------~~r~~ln~~~~~~~i-p~v~~~~  155 (245)
T PRK05690        109 ARL-DDDELAALIAGHDLVLDCTDNV-----------ATRNQLNRACFAAKK-PLVSGAA  155 (245)
T ss_pred             ccC-CHHHHHHHHhcCCEEEecCCCH-----------HHHHHHHHHHHHhCC-EEEEeee
Confidence            444 3556777888999999987421           112234566777764 5665443

>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional

Probab=97.08  E-value=0.0031  Score=54.32  Aligned_cols=74  Identities=19%  Similarity=0.146  Sum_probs=53.0

Q ss_pred             CCCCCeEEEEcc----------------CChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH
Q 028890           53 PPPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK  116 (202)
Q Consensus        53 ~~~~~~vlVtGa----------------~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~  116 (202)
                      +.++++|+||+|                ||.+|.+|++++..+|++|+++.-...-  .  .+.+++++..+  ..+++.
T Consensus       253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~--~--~p~~v~~i~V~--ta~eM~  326 (475)
T PRK13982        253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDL--A--DPQGVKVIHVE--SARQML  326 (475)
T ss_pred             ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCC--C--CCCCceEEEec--CHHHHH
Confidence            468899999976                7999999999999999999998733211  1  23456666543  444444


Q ss_pred             HHhc---CccEeEEccccC
Q 028890          117 EALD---GVTAVISCVGGF  132 (202)
Q Consensus       117 ~~~~---~~d~vi~~a~~~  132 (202)
                      ++++   ..|++|++|+..
T Consensus       327 ~av~~~~~~Di~I~aAAVa  345 (475)
T PRK13982        327 AAVEAALPADIAIFAAAVA  345 (475)
T ss_pred             HHHHhhCCCCEEEEecccc
Confidence            4443   379999999964

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.08  E-value=0.00032  Score=56.70  Aligned_cols=70  Identities=13%  Similarity=0.175  Sum_probs=48.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccc--cC---CCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD--SW---ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ..+++++|.|+ |+.|++++..|...|. +|++++|+..+....  ..   .....+..     .+++.+.+.++|+||+
T Consensus       125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~-----~~~~~~~~~~aDiVIn  198 (284)
T PRK12549        125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATA-----GSDLAAALAAADGLVH  198 (284)
T ss_pred             ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEe-----ccchHhhhCCCCEEEE
Confidence            45689999998 9999999999999997 899999986542110  00   11122221     1234456678999999


Q ss_pred             cc
Q 028890          128 CV  129 (202)
Q Consensus       128 ~a  129 (202)
                      +.
T Consensus       199 aT  200 (284)
T PRK12549        199 AT  200 (284)
T ss_pred             CC
Confidence            94

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.06  E-value=0.00083  Score=49.69  Aligned_cols=36  Identities=28%  Similarity=0.356  Sum_probs=30.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |++|.+.|- |-+|+.+++.|+++|++|++.+|++.+
T Consensus         1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~~   36 (163)
T PF03446_consen    1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPEK   36 (163)
T ss_dssp             -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHHH
T ss_pred             CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchhh
Confidence            579999997 999999999999999999999988644

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=97.05  E-value=0.022  Score=41.01  Aligned_cols=95  Identities=21%  Similarity=0.279  Sum_probs=60.9

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCc--eeEEEccCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANN--VIWHQGNLL  110 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~--~~~~~~D~~  110 (202)
                      +|+|.|+ |++|.++++.|...|. ++++++.+.-..  ..                      ....+.  ++.+..++.
T Consensus         1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~   79 (143)
T cd01483           1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS   79 (143)
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC
Confidence            5899997 9999999999999998 788887653210  00                      001223  333444443


Q ss_pred             CHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       111 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      + +...+.+.++|+||.+...           ......+.+.|++.++ .++..++
T Consensus        80 ~-~~~~~~~~~~diVi~~~d~-----------~~~~~~l~~~~~~~~i-~~i~~~~  122 (143)
T cd01483          80 E-DNLDDFLDGVDLVIDAIDN-----------IAVRRALNRACKELGI-PVIDAGG  122 (143)
T ss_pred             h-hhHHHHhcCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEcC
Confidence            3 2345677889999988754           1233355678888774 5666655

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.05  E-value=0.0027  Score=46.74  Aligned_cols=69  Identities=14%  Similarity=0.298  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ..++++|+|.|| |-+|...++.|++.|++|++++.........  ...+.+..-.+. ++    -+++.|.||.+.
T Consensus        10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIsp~~~~~l~~--l~~i~~~~~~~~-~~----dl~~a~lViaaT   78 (157)
T PRK06719         10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVSPEICKEMKE--LPYITWKQKTFS-ND----DIKDAHLIYAAT   78 (157)
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCccCHHHHh--ccCcEEEecccC-hh----cCCCceEEEECC
Confidence            357899999998 9999999999999999999885432222111  124444433332 22    246788887754

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=97.04  E-value=0.0079  Score=49.95  Aligned_cols=33  Identities=24%  Similarity=0.428  Sum_probs=27.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC-CeEEEEecC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRS   89 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~   89 (202)
                      ++|.|+|++|++|+++++.|..++ .++..+..+
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~   34 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVAS   34 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEC
Confidence            479999999999999999998876 588777433

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=97.04  E-value=0.00073  Score=54.57  Aligned_cols=75  Identities=15%  Similarity=0.104  Sum_probs=49.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .++++++|.|+ |+.|++++..|.+.|. +|++++|+..+...  ...........  +...+++...+.++|+||++..
T Consensus       123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~--~~~~~~~~~~~~~~DiVInaTp  199 (282)
T TIGR01809       123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITR--LEGDSGGLAIEKAAEVLVSTVP  199 (282)
T ss_pred             cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCccee--ccchhhhhhcccCCCEEEECCC
Confidence            45789999997 9999999999999996 79999998654211  11111111111  1112334455678999999976


Q ss_pred             c
Q 028890          131 G  131 (202)
Q Consensus       131 ~  131 (202)
                      .
T Consensus       200 ~  200 (282)
T TIGR01809       200 A  200 (282)
T ss_pred             C
Confidence            4

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.03  E-value=0.015  Score=48.50  Aligned_cols=99  Identities=18%  Similarity=0.168  Sum_probs=64.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCc--eeEEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANN--VIWHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~--~~~~~  106 (202)
                      .+..+|+|.|+ |++|+++++.|...|. ++++++.+.-..  ..                      ...++.  ++.+.
T Consensus        26 L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~  104 (355)
T PRK05597         26 LFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSV  104 (355)
T ss_pred             HhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEE
Confidence            35679999998 9999999999999997 788888764210  00                      011233  34444


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..+. ++...+.+.++|+||.+....           ..-..+-++|.+.++ .+|+.+.
T Consensus       105 ~~i~-~~~~~~~~~~~DvVvd~~d~~-----------~~r~~~n~~c~~~~i-p~v~~~~  151 (355)
T PRK05597        105 RRLT-WSNALDELRDADVILDGSDNF-----------DTRHLASWAAARLGI-PHVWASI  151 (355)
T ss_pred             eecC-HHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEE
Confidence            4553 455667888999999988431           111234567777774 5776655

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.02  E-value=0.0024  Score=49.18  Aligned_cols=72  Identities=22%  Similarity=0.287  Sum_probs=53.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc-CCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++++++|.|| |.+|..-++.|++.|++|++++....+..... ...+++++..++...     .+++++.||-+.+.
T Consensus         7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~-----dl~~~~lVi~at~d   79 (205)
T TIGR01470         7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDAD-----ILEGAFLVIAATDD   79 (205)
T ss_pred             cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHH-----HhCCcEEEEECCCC
Confidence            46789999998 99999999999999999999987654322221 234788888887522     35688888866543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.02  E-value=0.0049  Score=45.47  Aligned_cols=59  Identities=24%  Similarity=0.336  Sum_probs=43.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+|+++|.|.+..+|+-++..|.++|+.|+.+.....                      .+++..++.|+||.++|..
T Consensus        33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~----------------------~l~~~~~~ADIVVsa~G~~   90 (160)
T PF02882_consen   33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTK----------------------NLQEITRRADIVVSAVGKP   90 (160)
T ss_dssp             STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSS----------------------SHHHHHTTSSEEEE-SSST
T ss_pred             CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCC----------------------cccceeeeccEEeeeeccc
Confidence            468899999999999999999999999999988765431                      1456667888888888854


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      +
T Consensus        91 ~   91 (160)
T PF02882_consen   91 N   91 (160)
T ss_dssp             T
T ss_pred             c
Confidence            3

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=97.02  E-value=0.022  Score=45.64  Aligned_cols=100  Identities=14%  Similarity=0.159  Sum_probs=63.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCc--cc----------------------ccCCCceeEEEc-
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSS--LR----------------------DSWANNVIWHQG-  107 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~--~~----------------------~~~~~~~~~~~~-  107 (202)
                      ....+|+|.|+ |++|+++++.|...| .++++++.+.-..  ..                      ...++.+++... 
T Consensus        28 L~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~  106 (268)
T PRK15116         28 FADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVD  106 (268)
T ss_pred             hcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEe
Confidence            35679999998 999999999999999 4888888653210  00                      001233333222 


Q ss_pred             cCCCHhhHHHHhc-CccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALD-GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~-~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +..+++.+.+++. ++|+||.+....           ..-..+.+.|.+.++ .+|....
T Consensus       107 ~~i~~e~~~~ll~~~~D~VIdaiD~~-----------~~k~~L~~~c~~~~i-p~I~~gG  154 (268)
T PRK15116        107 DFITPDNVAEYMSAGFSYVIDAIDSV-----------RPKAALIAYCRRNKI-PLVTTGG  154 (268)
T ss_pred             cccChhhHHHHhcCCCCEEEEcCCCH-----------HHHHHHHHHHHHcCC-CEEEECC
Confidence            2334666666664 689998887642           222356788888775 5555443

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.01  E-value=0.0093  Score=50.20  Aligned_cols=98  Identities=20%  Similarity=0.252  Sum_probs=63.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc----------------------ccCCCcee--EEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR----------------------DSWANNVI--WHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~----------------------~~~~~~~~--~~~~  107 (202)
                      +..+|+|.|+ |++|+++++.|...|. ++++++++.-.  +..                      ....+.++  .+..
T Consensus       134 ~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        134 LEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             hcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            5678999987 9999999999999997 78888876211  000                      00123333  3333


Q ss_pred             cCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+ +.+.+.++++++|+||.+....           ..-..+-++|.+.++ .+|+.+.
T Consensus       213 ~~-~~~~~~~~~~~~D~Vv~~~d~~-----------~~r~~ln~~~~~~~i-p~i~~~~  258 (376)
T PRK08762        213 RV-TSDNVEALLQDVDVVVDGADNF-----------PTRYLLNDACVKLGK-PLVYGAV  258 (376)
T ss_pred             cC-ChHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEe
Confidence            33 3456777888999999987532           112234567777774 6666654

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.01  E-value=0.0025  Score=52.12  Aligned_cols=37  Identities=27%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .+|+|.|.|+ |.+|..+++.|.++|++|++.+|+...
T Consensus         3 ~~m~I~iiG~-G~~G~~lA~~l~~~G~~V~~~~r~~~~   39 (308)
T PRK14619          3 QPKTIAILGA-GAWGSTLAGLASANGHRVRVWSRRSGL   39 (308)
T ss_pred             CCCEEEEECc-cHHHHHHHHHHHHCCCEEEEEeCCCCC
Confidence            4578999987 999999999999999999999987643

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=96.99  E-value=0.0067  Score=49.46  Aligned_cols=79  Identities=18%  Similarity=0.233  Sum_probs=50.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~  135 (202)
                      .+|.|.|++|+.|..|++.|....+ ++..+.-+..               .+   +.+.+++++++|++|.+.+..   
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~---------------~~---~~~~~~~~~~~D~vFlalp~~---   60 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR---------------KD---AAERAKLLNAADVAILCLPDD---   60 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc---------------cC---cCCHhHhhcCCCEEEECCCHH---
Confidence            3799999999999999999998864 6666643221               01   112345567899998887531   


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          136 SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                               ....++..+.+.|+ ++|=.|+
T Consensus        61 ---------~s~~~~~~~~~~g~-~VIDlSa   81 (310)
T TIGR01851        61 ---------AAREAVSLVDNPNT-CIIDAST   81 (310)
T ss_pred             ---------HHHHHHHHHHhCCC-EEEECCh
Confidence                     11233444444454 6666665

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.99  E-value=0.0013  Score=55.91  Aligned_cols=74  Identities=14%  Similarity=0.226  Sum_probs=53.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ...+++++|.|+ |++|+.+++.|...|. ++++++|+..+...  ... ...     .+...+++.+.+..+|+||+|.
T Consensus       178 ~l~~kkvlviGa-G~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~-~~~-----~~~~~~~l~~~l~~aDiVI~aT  250 (414)
T PRK13940        178 NISSKNVLIIGA-GQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAF-RNA-----SAHYLSELPQLIKKADIIIAAV  250 (414)
T ss_pred             CccCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHh-cCC-----eEecHHHHHHHhccCCEEEECc
Confidence            457789999998 9999999999999995 79999998644211  111 111     1223456677888999999999


Q ss_pred             ccCC
Q 028890          130 GGFG  133 (202)
Q Consensus       130 ~~~~  133 (202)
                      +..+
T Consensus       251 ~a~~  254 (414)
T PRK13940        251 NVLE  254 (414)
T ss_pred             CCCC
Confidence            8643

>PRK08057 cobalt-precorrin-6x reductase; Reviewed

Probab=96.98  E-value=0.027  Score=44.67  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=65.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~  133 (202)
                      +++|+|.||| .=|+.+++.|.++|+.|++..-.....   .......+..+-+.+.+.+.+.++  +++.||...-++.
T Consensus         2 ~~~IlvlgGT-~egr~la~~L~~~g~~v~~Svat~~g~---~~~~~~~v~~G~l~~~~~l~~~l~~~~i~~VIDATHPfA   77 (248)
T PRK08057          2 MPRILLLGGT-SEARALARALAAAGVDIVLSLAGRTGG---PADLPGPVRVGGFGGAEGLAAYLREEGIDLVIDATHPYA   77 (248)
T ss_pred             CceEEEEech-HHHHHHHHHHHhCCCeEEEEEccCCCC---cccCCceEEECCCCCHHHHHHHHHHCCCCEEEECCCccH
Confidence            5789999995 568999999999999887766554332   223467788888879999999887  6999999887653


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCC
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVK  159 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~  159 (202)
                               ..-+.++.++|++.++.
T Consensus        78 ---------~~is~~a~~ac~~~~ip   94 (248)
T PRK08057         78 ---------AQISANAAAACRALGIP   94 (248)
T ss_pred             ---------HHHHHHHHHHHHHhCCc
Confidence                     12223445566555543

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.98  E-value=0.0048  Score=44.53  Aligned_cols=58  Identities=21%  Similarity=0.189  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +.++++++|.|.+.-+|+.++..|.++|..|+.+.++..                      ++++.++++|+||.+.|..
T Consensus        25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~----------------------~l~~~v~~ADIVvsAtg~~   82 (140)
T cd05212          25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTI----------------------QLQSKVHDADVVVVGSPKP   82 (140)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCc----------------------CHHHHHhhCCEEEEecCCC
Confidence            568999999999999999999999999999998875431                      2456778899999888854

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN02602 lactate dehydrogenase

Probab=96.97  E-value=0.021  Score=47.58  Aligned_cols=102  Identities=16%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------cc--CCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +||.|+|+ |.+|..++..|+..|.  ++..++.+.+....      ..  ...... +..+ .|   + +.++++|+||
T Consensus        38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~-i~~~-~d---y-~~~~daDiVV  110 (350)
T PLN02602         38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTK-ILAS-TD---Y-AVTAGSDLCI  110 (350)
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCE-EEeC-CC---H-HHhCCCCEEE
Confidence            69999996 9999999999998874  78999987643211      00  111222 2211 12   2 2378999999


Q ss_pred             EccccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          127 SCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       127 ~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      .+||....    ..+.+..|..-...+++..++.+.+ .++.+|
T Consensus       111 itAG~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        111 VTAGARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             ECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            99996432    2345566777777778888777655 455554

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=96.97  E-value=0.012  Score=44.14  Aligned_cols=70  Identities=13%  Similarity=0.148  Sum_probs=48.0

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc---------------------ccCCC--ceeEEEccCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR---------------------DSWAN--NVIWHQGNLLS  111 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~---------------------~~~~~--~~~~~~~D~~~  111 (202)
                      +|+|.|+ |++|..+++.|...|. ++++++.+.-.  ...                     ....+  +++.+...+ +
T Consensus         1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~-~   78 (174)
T cd01487           1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKI-D   78 (174)
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeec-C
Confidence            5899997 9999999999999998 68888876411  000                     00123  333444444 3


Q ss_pred             HhhHHHHhcCccEeEEcc
Q 028890          112 SDSWKEALDGVTAVISCV  129 (202)
Q Consensus       112 ~~~~~~~~~~~d~vi~~a  129 (202)
                      .+.+.+.++++|+||.+.
T Consensus        79 ~~~~~~~l~~~DlVi~~~   96 (174)
T cd01487          79 ENNLEGLFGDCDIVVEAF   96 (174)
T ss_pred             hhhHHHHhcCCCEEEECC
Confidence            456777888999999884

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.96  E-value=0.017  Score=47.96  Aligned_cols=70  Identities=21%  Similarity=0.299  Sum_probs=42.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHH-CCCe---EEEEecCCCC-cccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALD-RGLT---VASLSRSGRS-SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~-~g~~---V~~l~r~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      +.++|.|.||||++|+.+++.|.+ ..++   +..+...... +........+.+...   +++.    +.++|++|.++
T Consensus         4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~---~~~~----~~~~Divf~a~   76 (347)
T PRK06728          4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEA---KINS----FEGVDIAFFSA   76 (347)
T ss_pred             CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeC---CHHH----hcCCCEEEECC
Confidence            446999999999999999999985 4555   5555433221 111111112222222   3332    36799999988


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      +.
T Consensus        77 ~~   78 (347)
T PRK06728         77 GG   78 (347)
T ss_pred             Ch
Confidence            64

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.95  E-value=0.0019  Score=57.12  Aligned_cols=73  Identities=19%  Similarity=0.218  Sum_probs=57.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      ..+++|.|. |.+|+.++++|.++|++|++++.++++.. .....+...+.+|.+|++.++++ ++++|.++-+.+
T Consensus       417 ~~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~~~~-~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~  490 (558)
T PRK10669        417 CNHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRTRVD-ELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP  490 (558)
T ss_pred             CCCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence            468999998 99999999999999999999998865432 22235789999999999988764 356887766543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.93  E-value=0.0034  Score=50.94  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=33.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEe-cC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RS   89 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~-r~   89 (202)
                      +..+++|+|.|.++.+|+.++..|+++|+.|++.. |+
T Consensus       155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT  192 (296)
T PRK14188        155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRT  192 (296)
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCC
Confidence            46799999999999999999999999999999884 54

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=96.93  E-value=0.0019  Score=55.07  Aligned_cols=73  Identities=19%  Similarity=0.171  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..+++++|.|+ |.+|..+++.|...| .+|++++|+..+.......-+...+     +.+++.+.+.++|+||.+.+..
T Consensus       178 l~~~~VlViGa-G~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i-----~~~~l~~~l~~aDvVi~aT~s~  251 (417)
T TIGR01035       178 LKGKKALLIGA-GEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAV-----KFEDLEEYLAEADIVISSTGAP  251 (417)
T ss_pred             ccCCEEEEECC-hHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEe-----eHHHHHHHHhhCCEEEECCCCC
Confidence            56789999997 999999999999999 6899999986542111100111122     2345677788999999997653

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PLN02928 oxidoreductase family protein

Probab=96.93  E-value=0.0044  Score=51.57  Aligned_cols=78  Identities=17%  Similarity=0.127  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc---CCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS---WANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ...++++.|.|- |.||+.+++.|..-|.+|++.+|.........   .......+.......+++++++.++|+|+.+.
T Consensus       156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        156 TLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            457899999997 99999999999999999999988643211100   00111111111114567889999999999887


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      ..
T Consensus       235 Pl  236 (347)
T PLN02928        235 TL  236 (347)
T ss_pred             CC
Confidence            64

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=96.93  E-value=0.018  Score=47.18  Aligned_cols=96  Identities=16%  Similarity=0.205  Sum_probs=60.6

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCC--ceeEEEccCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWAN--NVIWHQGNLL  110 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~--~~~~~~~D~~  110 (202)
                      +|+|.|+ |++|.++++.|...|. +++++|.+.-..  ..                      ....+  +++.+..++.
T Consensus         1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~   79 (312)
T cd01489           1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIK   79 (312)
T ss_pred             CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCC
Confidence            5899997 9999999999999997 788877654221  00                      00122  3455556666


Q ss_pred             CHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       111 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +.+.-.+.++++|+||.+...           ...-..+-+.|...++ .+|...+
T Consensus        80 ~~~~~~~f~~~~DvVv~a~Dn-----------~~ar~~in~~c~~~~i-p~I~~gt  123 (312)
T cd01489          80 DPDFNVEFFKQFDLVFNALDN-----------LAARRHVNKMCLAADV-PLIESGT  123 (312)
T ss_pred             CccchHHHHhcCCEEEECCCC-----------HHHHHHHHHHHHHCCC-CEEEEec
Confidence            543344677889998887643           1222344566666664 5665554

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=96.92  E-value=0.0077  Score=48.96  Aligned_cols=96  Identities=25%  Similarity=0.189  Sum_probs=60.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHH---Hh--cCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE---AL--DGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~---~~--~~~d~vi~~a  129 (202)
                      .+.+++|+|+++.+|..+++.+...|++|++++++....... ...... ...|..+.+....   ..  .++|.+++++
T Consensus       166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  243 (342)
T cd08266         166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKLERA-KELGAD-YVIDYRKEDFVREVRELTGKRGVDVVVEHV  243 (342)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCC-eEEecCChHHHHHHHHHhCCCCCcEEEECC
Confidence            467999999999999999999999999999988765431110 001111 1234444433332   22  2589999998


Q ss_pred             ccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       130 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |..            .....++.++..  ++++.+++
T Consensus       244 g~~------------~~~~~~~~l~~~--G~~v~~~~  266 (342)
T cd08266         244 GAA------------TWEKSLKSLARG--GRLVTCGA  266 (342)
T ss_pred             cHH------------HHHHHHHHhhcC--CEEEEEec
Confidence            741            011234444433  58888876

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.92  E-value=0.0015  Score=52.34  Aligned_cols=70  Identities=16%  Similarity=0.298  Sum_probs=47.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCC--CceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~--~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      .++++++|+|+ |++|++++..|++.|++|++++|+..+...  ....  ..+...  +.   +.  ....++|+||++.
T Consensus       115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~--~~---~~--~~~~~~DivInat  186 (270)
T TIGR00507       115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAF--SM---DE--LPLHRVDLIINAT  186 (270)
T ss_pred             ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEe--ch---hh--hcccCccEEEECC
Confidence            45789999998 899999999999999999999987543211  0000  112222  11   11  1235799999998


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      +.
T Consensus       187 p~  188 (270)
T TIGR00507       187 SA  188 (270)
T ss_pred             CC
Confidence            75

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=96.90  E-value=0.02  Score=44.94  Aligned_cols=96  Identities=11%  Similarity=0.132  Sum_probs=59.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--cccc----------------------cCCC--ceeEEEccCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLRD----------------------SWAN--NVIWHQGNLL  110 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~~----------------------~~~~--~~~~~~~D~~  110 (202)
                      +|+|.|+ |++|.++++.|...|. ++++++.+.-.  ....                      ...+  +++.+..++.
T Consensus         1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~   79 (234)
T cd01484           1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVG   79 (234)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence            5889996 9999999999999997 78888776321  0000                      0112  3455666664


Q ss_pred             CHhhH-HHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          111 SSDSW-KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       111 ~~~~~-~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +++.+ .+.++++|+||.+...           ...-..+-+.|.+.++ .+|..++
T Consensus        80 ~~~~~~~~f~~~~DvVi~a~Dn-----------~~aR~~ln~~c~~~~i-plI~~g~  124 (234)
T cd01484          80 PEQDFNDTFFEQFHIIVNALDN-----------IIARRYVNGMLIFLIV-PLIESGT  124 (234)
T ss_pred             hhhhchHHHHhCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEcc
Confidence            43332 3567789999887632           2223344556666653 5665555

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.89  E-value=0.0013  Score=49.76  Aligned_cols=34  Identities=24%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |+|.|.|. |++|.-++-.|.+.|++|++++.++.
T Consensus         1 M~I~ViGl-GyvGl~~A~~lA~~G~~V~g~D~~~~   34 (185)
T PF03721_consen    1 MKIAVIGL-GYVGLPLAAALAEKGHQVIGVDIDEE   34 (185)
T ss_dssp             -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HH
T ss_pred             CEEEEECC-CcchHHHHHHHHhCCCEEEEEeCChH
Confidence            68999985 99999999999999999999998764

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>cd08293 PTGR2 Prostaglandin reductase

Probab=96.88  E-value=0.0056  Score=50.34  Aligned_cols=74  Identities=20%  Similarity=0.175  Sum_probs=47.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCH---hhHHHHh-cCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEAL-DGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~-~~~d~vi~~a~~  131 (202)
                      .+|+|+|++|.+|..+++.+...|+ +|+++++++++.......-+++.+ .|..+.   +.+.++. .++|++|.+.|.
T Consensus       156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~v-i~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAA-INYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEE-EECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            7999999999999999998888898 799988775432111000122221 222222   2233332 368999998874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.88  E-value=0.0026  Score=52.23  Aligned_cols=35  Identities=17%  Similarity=0.220  Sum_probs=29.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRS   89 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~   89 (202)
                      +++||.|.||+|+.|..|++.|..+.+ ++.+.+.+
T Consensus         1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~   36 (349)
T COG0002           1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSR   36 (349)
T ss_pred             CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeech
Confidence            367999999999999999999999864 76666543

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=96.87  E-value=0.0019  Score=55.19  Aligned_cols=73  Identities=22%  Similarity=0.298  Sum_probs=51.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..+++++|.|+ |.+|..+++.|...|. +|++.+|+..........-+.     ++.+.+++.+.+.++|+||.+.+..
T Consensus       180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~-----~~~~~~~~~~~l~~aDvVI~aT~s~  253 (423)
T PRK00045        180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG-----EAIPLDELPEALAEADIVISSTGAP  253 (423)
T ss_pred             ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-----cEeeHHHHHHHhccCCEEEECCCCC
Confidence            56789999997 9999999999999997 889999876442111000011     2223355667778999999998753

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.86  E-value=0.0056  Score=50.66  Aligned_cols=67  Identities=15%  Similarity=0.177  Sum_probs=52.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +++|.|.|| |.+|+.++.+-..-|++|++++-+++.....   -.-..+..+..|++.+.++.+.+|+|=
T Consensus         1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~---va~~~i~~~~dD~~al~ela~~~DViT   67 (375)
T COG0026           1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAAQ---VADRVIVAAYDDPEALRELAAKCDVIT   67 (375)
T ss_pred             CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchhh---cccceeecCCCCHHHHHHHHhhCCEEE
Confidence            478999998 9999999999999999999998665442111   122456677789999999999999873

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.85  E-value=0.002  Score=52.83  Aligned_cols=74  Identities=20%  Similarity=0.202  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..+++|+|.|+ |.+|..+++.|...| .+|++++|++.+.......-+...     .+.+++.+.+.++|+||.+.+..
T Consensus       176 l~~~~V~ViGa-G~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~-----~~~~~~~~~l~~aDvVi~at~~~  249 (311)
T cd05213         176 LKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNA-----VPLDELLELLNEADVVISATGAP  249 (311)
T ss_pred             ccCCEEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeE-----EeHHHHHHHHhcCCEEEECCCCC
Confidence            46789999998 999999999999876 688989988654211110011122     23345677778899999999864


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      .
T Consensus       250 ~  250 (311)
T cd05213         250 H  250 (311)
T ss_pred             c
Confidence            3

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=96.85  E-value=0.0085  Score=48.99  Aligned_cols=75  Identities=24%  Similarity=0.182  Sum_probs=47.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH---hh-HHHHh-cCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DS-WKEAL-DGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~---~~-~~~~~-~~~d~vi~~a  129 (202)
                      .+.+|+|+|++|.+|..+++.+...|.+|++++++.++.... ..-+++.+ .|..+.   .. +.... +++|+++.+.
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~-~~lGa~~v-i~~~~~~~~~~~~~~~~~~gvdvv~d~~  215 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYL-KKLGFDVA-FNYKTVKSLEETLKKASPDGYDCYFDNV  215 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCEE-EeccccccHHHHHHHhCCCCeEEEEECC
Confidence            567999999999999999998888899999888765432111 11122211 222222   22 22222 2589999988


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       216 G~  217 (325)
T TIGR02825       216 GG  217 (325)
T ss_pred             CH
Confidence            74

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.84  E-value=0.012  Score=48.28  Aligned_cols=71  Identities=20%  Similarity=0.232  Sum_probs=40.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC--e-EEEE--ecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL--T-VASL--SRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~--~-V~~l--~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +++|.|.|+||.+|+.+++.|.++..  + +..+  .|+..+.........+ -+.-|+.|..    .+.++|++|.++|
T Consensus         1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~-~v~~~~~~~~----~~~~~Divf~~ag   75 (334)
T COG0136           1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSI-GVPEDAADEF----VFSDVDIVFFAAG   75 (334)
T ss_pred             CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccc-cCcccccccc----ccccCCEEEEeCc
Confidence            46899999999999999999999753  2 3333  3333322111111111 1111112222    2337999999997


Q ss_pred             c
Q 028890          131 G  131 (202)
Q Consensus       131 ~  131 (202)
                      .
T Consensus        76 ~   76 (334)
T COG0136          76 G   76 (334)
T ss_pred             h
Confidence            5

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=96.83  E-value=0.0037  Score=53.23  Aligned_cols=68  Identities=16%  Similarity=0.144  Sum_probs=48.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+++++|+|. |.+|+.+++.|...|.+|+++++++.+..... ..++.+.        .++++++++|+||.+.|.
T Consensus       210 l~Gk~VlViG~-G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~-~~G~~v~--------~l~eal~~aDVVI~aTG~  277 (425)
T PRK05476        210 IAGKVVVVAGY-GDVGKGCAQRLRGLGARVIVTEVDPICALQAA-MDGFRVM--------TMEEAAELGDIFVTATGN  277 (425)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHH-hcCCEec--------CHHHHHhCCCEEEECCCC
Confidence            46889999997 99999999999999999999998765532211 1122221        134556678888887763

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.82  E-value=0.0018  Score=50.32  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=32.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |+|.|+||+|.+|..++..|.+.|++|.+.+|+++.
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~   36 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEK   36 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHH
Confidence            579999999999999999999999999999887643

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.82  E-value=0.0045  Score=50.48  Aligned_cols=100  Identities=13%  Similarity=0.141  Sum_probs=65.2

Q ss_pred             EEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccc------ccCC--CceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           59 LLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR------DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~------~~~~--~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      |.|.|+ |++|..++-.|+..|  .++++++++.+....      ....  ....+...  .|    .+.+.++|+||.+
T Consensus         1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~--~~----~~~l~~aDiVIit   73 (300)
T cd00300           1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRG--GD----YADAADADIVVIT   73 (300)
T ss_pred             CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEEC--CC----HHHhCCCCEEEEc
Confidence            468887 899999999999988  689999987654211      1000  11222211  12    2467899999999


Q ss_pred             cccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          129 VGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       129 a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      +|....    ....+..|..-...+++..++.+.+ .++.+|
T Consensus        74 ag~p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          74 AGAPRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            996432    2345566777777888888877755 444444

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=96.81  E-value=0.002  Score=49.33  Aligned_cols=36  Identities=22%  Similarity=0.291  Sum_probs=29.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      ||++.|.| +|.||..+++.|.+.||+|++-.|+.++
T Consensus         1 m~~~~i~G-tGniG~alA~~~a~ag~eV~igs~r~~~   36 (211)
T COG2085           1 MMIIAIIG-TGNIGSALALRLAKAGHEVIIGSSRGPK   36 (211)
T ss_pred             CcEEEEec-cChHHHHHHHHHHhCCCeEEEecCCChh
Confidence            34555555 6999999999999999999998776654

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.81  E-value=0.02  Score=48.42  Aligned_cols=98  Identities=18%  Similarity=0.123  Sum_probs=62.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCc--eeEEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANN--VIWHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~--~~~~~~  107 (202)
                      +..+|+|.|+ |++|..+++.|...|. ++++++.+.-..  ..                      ...++.  ++.+..
T Consensus        41 ~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  119 (392)
T PRK07878         41 KNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEF  119 (392)
T ss_pred             hcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEec
Confidence            5679999998 9999999999999997 777777653110  00                      001233  333444


Q ss_pred             cCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ++. .+...++++++|+||-|...           ...-..+-++|.+.++ .+|+.+.
T Consensus       120 ~i~-~~~~~~~~~~~D~Vvd~~d~-----------~~~r~~ln~~~~~~~~-p~v~~~~  165 (392)
T PRK07878        120 RLD-PSNAVELFSQYDLILDGTDN-----------FATRYLVNDAAVLAGK-PYVWGSI  165 (392)
T ss_pred             cCC-hhHHHHHHhcCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            443 44567788899999987632           1222234567777764 5666655

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.81  E-value=0.002  Score=54.37  Aligned_cols=74  Identities=19%  Similarity=0.241  Sum_probs=56.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .+.++++|.|+ |-+|.-++++|.++| .+|++++|+..+.......-+     +++...+.+...+...|+||.+-+..
T Consensus       176 L~~~~vlvIGA-Gem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-----~~~~~l~el~~~l~~~DvVissTsa~  249 (414)
T COG0373         176 LKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-----AEAVALEELLEALAEADVVISSTSAP  249 (414)
T ss_pred             cccCeEEEEcc-cHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-----CeeecHHHHHHhhhhCCEEEEecCCC
Confidence            57889999998 999999999999999 589999998665322111111     45556677888899999999998754


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      +
T Consensus       250 ~  250 (414)
T COG0373         250 H  250 (414)
T ss_pred             c
Confidence            4

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=96.81  E-value=0.035  Score=42.44  Aligned_cols=97  Identities=14%  Similarity=0.208  Sum_probs=61.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCC--ceeEEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWAN--NVIWHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~--~~~~~~~  107 (202)
                      +..+|+|.|+ |++|.++++.|...|. ++++++.+.-..  ..                      ...++  +++....
T Consensus        20 ~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~   98 (197)
T cd01492          20 RSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTD   98 (197)
T ss_pred             HhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEec
Confidence            5679999997 6699999999999997 688887653210  00                      01123  3344444


Q ss_pred             cCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+.  +...+.++++|+||.+...           ......+-+.|++.++ .+|+.++
T Consensus        99 ~~~--~~~~~~~~~~dvVi~~~~~-----------~~~~~~ln~~c~~~~i-p~i~~~~  143 (197)
T cd01492          99 DIS--EKPEEFFSQFDVVVATELS-----------RAELVKINELCRKLGV-KFYATGV  143 (197)
T ss_pred             Ccc--ccHHHHHhCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEEe
Confidence            443  2235567889999977532           1222344577888876 5676666

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.81  E-value=0.018  Score=48.34  Aligned_cols=99  Identities=19%  Similarity=0.293  Sum_probs=64.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc----------------------ccCCCc--eeEEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR----------------------DSWANN--VIWHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~----------------------~~~~~~--~~~~~  106 (202)
                      .+..+|+|.|+ |++|..+++.|...|. ++++++.+.-.  +..                      ...++.  ++.+.
T Consensus        39 l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~  117 (370)
T PRK05600         39 LHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALR  117 (370)
T ss_pred             hcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEee
Confidence            45679999998 9999999999999996 88888876311  000                      011233  34444


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..+ +++.+.++++++|+||.|....           ..-..+-++|.+.++ .+|+.+.
T Consensus       118 ~~i-~~~~~~~~~~~~DlVid~~Dn~-----------~~r~~in~~~~~~~i-P~v~~~~  164 (370)
T PRK05600        118 ERL-TAENAVELLNGVDLVLDGSDSF-----------ATKFLVADAAEITGT-PLVWGTV  164 (370)
T ss_pred             eec-CHHHHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEE
Confidence            444 3556778889999999887431           222233466777664 4665554

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.79  E-value=0.027  Score=48.35  Aligned_cols=107  Identities=9%  Similarity=0.031  Sum_probs=61.8

Q ss_pred             EEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCccchh
Q 028890           61 VLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYK  140 (202)
Q Consensus        61 VtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~  140 (202)
                      |+||+|++|.++++.|...|++|++..+...+. ......++.-+.+|.+..++.+++..                 .  
T Consensus        43 l~~~~~g~~~~~~~~~~~~g~~v~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~l~~-----------------~--  102 (450)
T PRK08261         43 LVGGAGRLAEALAALLAGLGYDVVANNDGGLTW-AAGWGDRFGALVFDATGITDPADLKA-----------------L--  102 (450)
T ss_pred             EEccCchhHHHHHHHHhhCCCeeeecCcccccc-ccCcCCcccEEEEECCCCCCHHHHHH-----------------H--
Confidence            778889999999999999999999876654321 11112244434445443333222110                 0  


Q ss_pred             hhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          141 INGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       141 ~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                        .......++.+..  ..+||+++|....   .....|+.+|.+.+.+++...
T Consensus       103 --~~~~~~~l~~l~~--~griv~i~s~~~~---~~~~~~~~akaal~gl~rsla  149 (450)
T PRK08261        103 --YEFFHPVLRSLAP--CGRVVVLGRPPEA---AADPAAAAAQRALEGFTRSLG  149 (450)
T ss_pred             --HHHHHHHHHhccC--CCEEEEEcccccc---CCchHHHHHHHHHHHHHHHHH
Confidence              0111122222222  3599999983221   122359999999998888753

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=96.78  E-value=0.0088  Score=49.35  Aligned_cols=75  Identities=29%  Similarity=0.270  Sum_probs=47.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH---hhHHHHhc--CccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALD--GVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~--~~d~vi~~a  129 (202)
                      .+.+|||+||+|++|...++.+...|+.++++..+..+.. .....+...+ .|+.+.   +.+.++..  ++|+|+...
T Consensus       142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~-~~~~lGAd~v-i~y~~~~~~~~v~~~t~g~gvDvv~D~v  219 (326)
T COG0604         142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLE-LLKELGADHV-INYREEDFVEQVRELTGGKGVDVVLDTV  219 (326)
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHH-HHHhcCCCEE-EcCCcccHHHHHHHHcCCCCceEEEECC
Confidence            3789999999999999999999999976666655543322 1111222111 123333   33444443  589999988


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       220 G~  221 (326)
T COG0604         220 GG  221 (326)
T ss_pred             CH
Confidence            75

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.76  E-value=0.016  Score=49.30  Aligned_cols=75  Identities=20%  Similarity=0.269  Sum_probs=47.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC------CCcee-----EE-EccCCCHhhHHHHhcCccE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW------ANNVI-----WH-QGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~------~~~~~-----~~-~~D~~~~~~~~~~~~~~d~  124 (202)
                      |+|.|.|. |++|..++..|.+.|++|++.++++........      .++++     .+ .+.+.-..++.++++++|+
T Consensus         1 mkI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~adv   79 (411)
T TIGR03026         1 MKIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADV   79 (411)
T ss_pred             CEEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCE
Confidence            47899986 999999999999999999999987653211000      00000     00 0001111234556778999


Q ss_pred             eEEccccC
Q 028890          125 VISCVGGF  132 (202)
Q Consensus       125 vi~~a~~~  132 (202)
                      ||-|.+..
T Consensus        80 vii~vpt~   87 (411)
T TIGR03026        80 IIICVPTP   87 (411)
T ss_pred             EEEEeCCC
Confidence            99998753

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>cd05295 MDH_like Malate dehydrogenase-like

Probab=96.74  E-value=0.026  Score=48.48  Aligned_cols=105  Identities=5%  Similarity=-0.047  Sum_probs=67.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC---CC----eEEEEecCCCCccc--------c---cCCCceeEEEccCCCHhhHH
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR---GL----TVASLSRSGRSSLR--------D---SWANNVIWHQGNLLSSDSWK  116 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~---g~----~V~~l~r~~~~~~~--------~---~~~~~~~~~~~D~~~~~~~~  116 (202)
                      ..-+|+||||+|.||.+|+-.+..-   |.    .++.++..+.....        .   ....++.+. .|      -.
T Consensus       122 ~p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G~amDL~D~a~pll~~v~i~-~~------~~  194 (452)
T cd05295         122 NPLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKGLVMEVEDLAFPLLRGISVT-TD------LD  194 (452)
T ss_pred             CceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHHHHHHHHHhHHhhcCCcEEE-EC------CH
Confidence            3468999999999999999998763   32    35556653222110        0   001123332 21      14


Q ss_pred             HHhcCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCC--CEEEEEec
Q 028890          117 EALDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGV--KRFVYISA  166 (202)
Q Consensus       117 ~~~~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~--~~~v~~SS  166 (202)
                      +.++++|+||..+|....    ..+..+.|..-...+.++..+...  .+++.+.|
T Consensus       195 ea~~daDvvIitag~prk~G~~R~DLL~~N~~Ifk~~g~~I~~~a~~~~~VlVv~t  250 (452)
T cd05295         195 VAFKDAHVIVLLDDFLIKEGEDLEGCIRSRVAICQLYGPLIEKNAKEDVKVIVAGR  250 (452)
T ss_pred             HHhCCCCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEeC
Confidence            677899999999996432    234567777777777888877765  56776665

These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.74  E-value=0.0088  Score=49.04  Aligned_cols=67  Identities=19%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..++++.|.|- |.||+.+++.|..-|++|++.+|.....      .++...    ...++++++++++|+|+.+...
T Consensus       134 l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~~~~~------~~~~~~----~~~~~l~e~l~~aDvvv~~lPl  200 (312)
T PRK15469        134 REDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRSRKSW------PGVQSF----AGREELSAFLSQTRVLINLLPN  200 (312)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCC------CCceee----cccccHHHHHhcCCEEEECCCC
Confidence            46789999996 9999999999999999999998764321      111111    1345788999999999988864

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=96.73  E-value=0.035  Score=43.53  Aligned_cols=97  Identities=15%  Similarity=0.229  Sum_probs=64.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC------ccc------------------ccCCCceeEEEc-c
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS------SLR------------------DSWANNVIWHQG-N  108 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~------~~~------------------~~~~~~~~~~~~-D  108 (202)
                      +..+|+|.|. |++|++.+++|.+.|. ++++++-+.-.      +..                  ...++.+++... |
T Consensus        29 ~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~  107 (263)
T COG1179          29 KQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAIND  107 (263)
T ss_pred             hhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHh
Confidence            5669999998 9999999999999996 77777654311      000                  112355555444 3


Q ss_pred             CCCHhhHHHHhc-CccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          109 LLSSDSWKEALD-GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       109 ~~~~~~~~~~~~-~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +-.++.+++++. ++|.||-+.-.           +..-..++..|.+++.   -++||
T Consensus       108 f~t~en~~~~~~~~~DyvIDaiD~-----------v~~Kv~Li~~c~~~ki---~vIss  152 (263)
T COG1179         108 FITEENLEDLLSKGFDYVIDAIDS-----------VRAKVALIAYCRRNKI---PVISS  152 (263)
T ss_pred             hhCHhHHHHHhcCCCCEEEEchhh-----------hHHHHHHHHHHHHcCC---CEEee
Confidence            456777887776 48888877632           2333466888888775   34456

>TIGR01142 purT phosphoribosylglycinamide formyltransferase 2

Probab=96.72  E-value=0.0081  Score=50.37  Aligned_cols=68  Identities=21%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a  129 (202)
                      ||+|.|+ |..|..+++.+.+.|++|++++.++....... .+  ..+..|..|.+.+.++.+  ++|+|+...
T Consensus         1 kililG~-g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~~~-ad--~~~~~~~~d~~~l~~~~~~~~id~v~~~~   70 (380)
T TIGR01142         1 RVLLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAMQV-AH--RSYVINMLDGDALRAVIEREKPDYIVPEI   70 (380)
T ss_pred             CEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchhhh-Cc--eEEEcCCCCHHHHHHHHHHhCCCEEEecc
Confidence            5899996 99999999999999999999998754322111 11  345678889999988887  699988654

This enzyme is an alternative to PurN (TIGR00639)

>PRK14851 hypothetical protein; Provisional

Probab=96.70  E-value=0.033  Score=50.33  Aligned_cols=101  Identities=18%  Similarity=0.158  Sum_probs=65.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc----------------------ccCCC--ceeEEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR----------------------DSWAN--NVIWHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~----------------------~~~~~--~~~~~~  106 (202)
                      .+..+|+|.|. |++|+++++.|...|. ++++++.+.-.  +..                      ...++  +++.+.
T Consensus        41 L~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~  119 (679)
T PRK14851         41 LAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFP  119 (679)
T ss_pred             HhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEe
Confidence            35679999997 9999999999999996 67777654211  000                      00123  455666


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..+. ++.+.++++++|+||.+.-...         ...-..+.+.|.+.++ .+|+.+.
T Consensus       120 ~~i~-~~n~~~~l~~~DvVid~~D~~~---------~~~r~~l~~~c~~~~i-P~i~~g~  168 (679)
T PRK14851        120 AGIN-ADNMDAFLDGVDVVLDGLDFFQ---------FEIRRTLFNMAREKGI-PVITAGP  168 (679)
T ss_pred             cCCC-hHHHHHHHhCCCEEEECCCCCc---------HHHHHHHHHHHHHCCC-CEEEeec
Confidence            6664 5678888999999997763211         1111234667878775 4665544

>PRK06444 prephenate dehydrogenase; Provisional

Probab=96.69  E-value=0.0039  Score=47.67  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=26.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVAS   85 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~   85 (202)
                      +++.|.||+|.+|+++++.|.+.|+.|++
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~   29 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI   29 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEEE
Confidence            48999999999999999999999999863

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.69  E-value=0.002  Score=52.76  Aligned_cols=35  Identities=26%  Similarity=0.306  Sum_probs=31.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ||+|.|.|+ |.+|..++..|.+.|++|++.+|++.
T Consensus         1 mmkI~iiG~-G~mG~~~a~~L~~~g~~V~~~~r~~~   35 (325)
T PRK00094          1 MMKIAVLGA-GSWGTALAIVLARNGHDVTLWARDPE   35 (325)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            468999997 99999999999999999999998753

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.68  E-value=0.014  Score=50.05  Aligned_cols=73  Identities=19%  Similarity=0.185  Sum_probs=51.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-cccC--CCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-RDSW--ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+++++|+|. |..|.++++.|.++|++|.+.+..+.... ....  ..++.+..+...  +   ..+.++|.||...|.
T Consensus         4 ~~~~~~v~G~-g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~--~---~~~~~~d~vv~spgi   77 (445)
T PRK04308          4 QNKKILVAGL-GGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLK--D---ALDNGFDILALSPGI   77 (445)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCC--H---HHHhCCCEEEECCCC
Confidence            4679999998 79999999999999999999887654311 1111  135555554422  1   234679999999997


Q ss_pred             CC
Q 028890          132 FG  133 (202)
Q Consensus       132 ~~  133 (202)
                      ..
T Consensus        78 ~~   79 (445)
T PRK04308         78 SE   79 (445)
T ss_pred             CC
Confidence            54

>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]

Probab=96.67  E-value=0.02  Score=45.31  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=29.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEE-EecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVAS-LSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~-l~r~~~   91 (202)
                      +++|.|.|++|-+|+.+++.+.+.+ .++.+ ++|.+.
T Consensus         2 ~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~   39 (266)
T COG0289           2 MIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGS   39 (266)
T ss_pred             CceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCc
Confidence            5799999999999999999999885 56544 556543

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=96.66  E-value=0.031  Score=47.12  Aligned_cols=104  Identities=14%  Similarity=0.143  Sum_probs=65.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-e----EEE--E--ecCCCCccc------c---cCCCceeEEEccCCCHhhHHH
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-T----VAS--L--SRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKE  117 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~----V~~--l--~r~~~~~~~------~---~~~~~~~~~~~D~~~~~~~~~  117 (202)
                      .-||.|+|++|.+|.+++-.|+..|. .    |.+  +  +++.+....      .   ....++.+...   +    .+
T Consensus        44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~---~----y~  116 (387)
T TIGR01757        44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGID---P----YE  116 (387)
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecC---C----HH
Confidence            46999999999999999999998864 3    333  3  554433110      0   00112221111   1    35


Q ss_pred             HhcCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 028890          118 ALDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (202)
Q Consensus       118 ~~~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~-~~-~~v~~SS  166 (202)
                      .++++|+||..||....    ....+..|..-...+.+.+.++. .. .+|.+|.
T Consensus       117 ~~kdaDIVVitAG~prkpg~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN  171 (387)
T TIGR01757       117 VFEDADWALLIGAKPRGPGMERADLLDINGQIFADQGKALNAVASKNCKVLVVGN  171 (387)
T ss_pred             HhCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            67899999999996432    23456777887888888887743 44 4555553

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=96.64  E-value=0.007  Score=52.09  Aligned_cols=69  Identities=13%  Similarity=0.153  Sum_probs=50.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++++|.|. |.||+.+++.|...|++|+++.+++....... ..++.+.        .++++++++|+||.+.|.
T Consensus       251 ~LaGKtVgVIG~-G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~-~~G~~~~--------~leell~~ADIVI~atGt  319 (476)
T PTZ00075        251 MIAGKTVVVCGY-GDVGKGCAQALRGFGARVVVTEIDPICALQAA-MEGYQVV--------TLEDVVETADIFVTATGN  319 (476)
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhHHHHH-hcCceec--------cHHHHHhcCCEEEECCCc
Confidence            457899999997 89999999999999999999887754421111 1222221        255677889999988764

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.63  E-value=0.0089  Score=48.21  Aligned_cols=58  Identities=21%  Similarity=0.270  Sum_probs=46.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.++.+|+-++..|+++|+.|+++....                      .++.+.+++.|+||.+.|..
T Consensus       155 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t----------------------~~l~~~~~~ADIVV~avG~~  212 (285)
T PRK14189        155 PLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT----------------------RDLAAHTRQADIVVAAVGKR  212 (285)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC----------------------CCHHHHhhhCCEEEEcCCCc
Confidence            45789999999999999999999999999998764321                      12456677888888888843

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.62  E-value=0.07  Score=41.84  Aligned_cols=98  Identities=14%  Similarity=0.142  Sum_probs=61.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCcee--EEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANNVI--WHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~~~--~~~~  107 (202)
                      +..+|+|.|. |++|+++++.|...|. ++++++.+.-..  ..                      ...++.++  .+..
T Consensus        10 ~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~   88 (231)
T cd00755          10 RNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEE   88 (231)
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeee
Confidence            5679999998 9999999999999996 788887653110  00                      00123333  3333


Q ss_pred             cCCCHhhHHHHhc-CccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALD-GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~-~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+ +++.+.+++. ++|+||.|...           ...-..+.+.|.+.++ .+|...+
T Consensus        89 ~i-~~~~~~~l~~~~~D~VvdaiD~-----------~~~k~~L~~~c~~~~i-p~I~s~g  135 (231)
T cd00755          89 FL-TPDNSEDLLGGDPDFVVDAIDS-----------IRAKVALIAYCRKRKI-PVISSMG  135 (231)
T ss_pred             ec-CHhHHHHHhcCCCCEEEEcCCC-----------HHHHHHHHHHHHHhCC-CEEEEeC
Confidence            33 3455666664 58999888643           1222356788888775 5554433

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK10537 voltage-gated potassium channel; Provisional

Probab=96.62  E-value=0.01  Score=50.22  Aligned_cols=70  Identities=14%  Similarity=0.175  Sum_probs=54.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a  129 (202)
                      +.+++|.|. |.+|+.++++|.++|.++++++.+..   +.....+..++.+|.+|++.++++ +++++.+|-+.
T Consensus       240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~~---~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t  310 (393)
T PRK10537        240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLGL---EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALR  310 (393)
T ss_pred             CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECchh---hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcC
Confidence            467999997 89999999999999999988886522   222335678999999999988764 45688887655

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.61  E-value=0.0033  Score=56.35  Aligned_cols=73  Identities=14%  Similarity=0.174  Sum_probs=58.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHH-HhcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~vi~~a~  130 (202)
                      .++|+|.|. |.+|+.+++.|.++|+++++++.+++.... ....+..++.+|.+|++.+++ -++++|.+|-+-.
T Consensus       400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~~v~~-~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~  473 (621)
T PRK03562        400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPDHIET-LRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID  473 (621)
T ss_pred             cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHHHHHH-HHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence            468999998 999999999999999999999988765221 223578899999999998875 3456888887764

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.61  E-value=0.0081  Score=50.34  Aligned_cols=58  Identities=17%  Similarity=0.111  Sum_probs=44.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..++|.|.|.+|.||.++++.|.+. |++|++.++....                   .....+.+.++|+||.|..+
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~-------------------~~~~~~~v~~aDlVilavPv   61 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG-------------------SLDPATLLQRADVLIFSAPI   61 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc-------------------cCCHHHHhcCCCEEEEeCCH
Confidence            4579999999999999999999975 8899988874211                   11234556788888888763

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.61  E-value=0.017  Score=49.23  Aligned_cols=36  Identities=19%  Similarity=0.285  Sum_probs=32.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      +++|.|.|. |++|..++..|.+.|++|++.++++..
T Consensus         3 ~~kI~VIGl-G~~G~~~A~~La~~G~~V~~~D~~~~~   38 (415)
T PRK11064          3 FETISVIGL-GYIGLPTAAAFASRQKQVIGVDINQHA   38 (415)
T ss_pred             ccEEEEECc-chhhHHHHHHHHhCCCEEEEEeCCHHH
Confidence            478999986 999999999999999999999998654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=96.60  E-value=0.01  Score=51.44  Aligned_cols=110  Identities=15%  Similarity=0.076  Sum_probs=61.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcccccCCCceeEEE-----------c-cCCCHhhHHHHhcC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQ-----------G-NLLSSDSWKEALDG  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~~-----------~-D~~~~~~~~~~~~~  121 (202)
                      +|+|.|.|. |++|..++-.|.+.|  ++|++++.++.+... ...+...+..           . .+.-..++.+++++
T Consensus         1 ~m~I~ViG~-GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~-l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          1 MVKICCIGA-GYVGGPTMAVIALKCPDIEVVVVDISVPRIDA-WNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhcCCCCeEEEEECCHHHHHH-HHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhc
Confidence            478999986 999999999999885  789999987644111 0001111100           0 01111224556778


Q ss_pred             ccEeEEccccCCCCc---cchhhhHHHHHHHHHHHHHc-CCCEEEEEecc
Q 028890          122 VTAVISCVGGFGSNS---YMYKINGTANINAIRAASEK-GVKRFVYISAA  167 (202)
Q Consensus       122 ~d~vi~~a~~~~~~~---~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS~  167 (202)
                      +|++|-|.+.....+   .....+.......++...+. ...++|.+.|+
T Consensus        79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST  128 (473)
T PLN02353         79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST  128 (473)
T ss_pred             CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            999999988543211   11234444444444444332 22456666663

>PRK06849 hypothetical protein; Provisional

Probab=96.59  E-value=0.0066  Score=51.19  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=34.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .++|+|+|||+...+|..+++.|.+.|++|++++..+.
T Consensus         2 ~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~   39 (389)
T PRK06849          2 NTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY   39 (389)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            35789999999999999999999999999999987653

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.59  E-value=0.011  Score=47.72  Aligned_cols=58  Identities=21%  Similarity=0.266  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.+..+|+-++..|+.+|+.|+++.+...                      ++.+..++.|+||.+.|-.
T Consensus       156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~----------------------~l~~~~~~ADIvi~avG~p  213 (285)
T PRK10792        156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK----------------------NLRHHVRNADLLVVAVGKP  213 (285)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC----------------------CHHHHHhhCCEEEEcCCCc
Confidence            356899999999999999999999999999988765421                      2566677888888888753

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.58  E-value=0.012  Score=50.98  Aligned_cols=75  Identities=21%  Similarity=0.170  Sum_probs=51.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...+++|+|.|. |+.|.++++.|++.|++|.+.+++...........++++..++- +++    .++++|.||...|..
T Consensus        12 ~~~~~~v~v~G~-G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~-~~~----~~~~~d~vV~Spgi~   85 (473)
T PRK00141         12 QELSGRVLVAGA-GVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAE-ASD----QLDSFSLVVTSPGWR   85 (473)
T ss_pred             cccCCeEEEEcc-CHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCC-chh----HhcCCCEEEeCCCCC
Confidence            346778999996 99999999999999999999997643321111123555554321 122    235789999999875


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      .
T Consensus        86 ~   86 (473)
T PRK00141         86 P   86 (473)
T ss_pred             C
Confidence            4

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.58  E-value=0.013  Score=50.91  Aligned_cols=73  Identities=15%  Similarity=0.051  Sum_probs=51.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      .++++|+|.|+ |++|..+++.|.++|++|+++++++....    ......++++..++-..      ...++|.||...
T Consensus        14 ~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~------~~~~~D~Vv~s~   86 (480)
T PRK01438         14 WQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT------LPEDTDLVVTSP   86 (480)
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc------ccCCCCEEEECC
Confidence            45779999998 99999999999999999999986643211    11223466666554221      235689999998


Q ss_pred             ccCC
Q 028890          130 GGFG  133 (202)
Q Consensus       130 ~~~~  133 (202)
                      |...
T Consensus        87 Gi~~   90 (480)
T PRK01438         87 GWRP   90 (480)
T ss_pred             CcCC
Confidence            8643

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=96.57  E-value=0.013  Score=46.04  Aligned_cols=97  Identities=26%  Similarity=0.258  Sum_probs=57.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH----hcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA----LDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~----~~~~d~vi~~a  129 (202)
                      ..+.+++|+|+++ +|..+++.+...|.+|+++++++....... ..+... ..|..+.+....+    -.++|++|+++
T Consensus       133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~  209 (271)
T cd05188         133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSDEKLELAK-ELGADH-VIDYKEEDLEEELRLTGGGGADVVIDAV  209 (271)
T ss_pred             CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HhCCce-eccCCcCCHHHHHHHhcCCCCCEEEECC
Confidence            3567999999988 999999999999999999988753311110 011111 1233333322222    23689999998


Q ss_pred             ccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       130 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +..           .....+++.++..  ++++.++.
T Consensus       210 ~~~-----------~~~~~~~~~l~~~--G~~v~~~~  233 (271)
T cd05188         210 GGP-----------ETLAQALRLLRPG--GRIVVVGG  233 (271)
T ss_pred             CCH-----------HHHHHHHHhcccC--CEEEEEcc
Confidence            742           1112234444333  47888876

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.55  E-value=0.0053  Score=49.77  Aligned_cols=76  Identities=14%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCC---Cc--ccccCCC--ceeEEEccCCCHhhHHHHhcCccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR---SS--LRDSWAN--NVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~---~~--~~~~~~~--~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      .++++++|.|+ |+.+++++-.|...|. +|++++|+..   +.  .......  .......++.+.+.+.+.+.+.|+|
T Consensus       122 ~~~k~vlvlGa-GGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDiv  200 (288)
T PRK12749        122 IKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADIL  200 (288)
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEE
Confidence            46689999998 8889999999999886 8999999853   11  1011111  1111112222233355566789999


Q ss_pred             EEccc
Q 028890          126 ISCVG  130 (202)
Q Consensus       126 i~~a~  130 (202)
                      |++-.
T Consensus       201 INaTp  205 (288)
T PRK12749        201 TNGTK  205 (288)
T ss_pred             EECCC
Confidence            99864

>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial

Probab=96.54  E-value=0.035  Score=46.39  Aligned_cols=85  Identities=20%  Similarity=0.298  Sum_probs=49.2

Q ss_pred             CeEEEEccCChhHHHHHHHHH-HCCCe---EEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           57 EKLLVLGGNGFVGSHICREAL-DRGLT---VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll-~~g~~---V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ++|.|.||||.+|+.+++.|. ++.+.   ++.+...........+.. .....-++.+.    ..+.++|++|.++|. 
T Consensus         1 ~~VavvGATG~VG~~ll~~L~~e~~fp~~~~~~~ss~~s~g~~~~f~~-~~~~v~~~~~~----~~~~~vDivffa~g~-   74 (366)
T TIGR01745         1 KNVGLVGWRGMVGSVLMQRMQEERDFDAIRPVFFSTSQLGQAAPSFGG-TTGTLQDAFDI----DALKALDIIITCQGG-   74 (366)
T ss_pred             CeEEEEcCcCHHHHHHHHHHHhCCCCccccEEEEEchhhCCCcCCCCC-CcceEEcCccc----ccccCCCEEEEcCCH-
Confidence            478999999999999999999 55653   444443221111111111 11122233222    234689999999975 


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCC
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                                 .-+..+...+.++|.
T Consensus        75 -----------~~s~~~~p~~~~aG~   89 (366)
T TIGR01745        75 -----------DYTNEIYPKLRESGW   89 (366)
T ss_pred             -----------HHHHHHHHHHHhCCC
Confidence                       122344666677774

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.53  E-value=0.012  Score=46.93  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=31.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC---CeEEEEecCCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRS   92 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l~r~~~~   92 (202)
                      |++|.|.|+ |.+|..+++.|.+.|   ++|++.+|++..
T Consensus         2 mm~I~iIG~-G~mG~~la~~l~~~g~~~~~v~v~~r~~~~   40 (267)
T PRK11880          2 MKKIGFIGG-GNMASAIIGGLLASGVPAKDIIVSDPSPEK   40 (267)
T ss_pred             CCEEEEEec-hHHHHHHHHHHHhCCCCcceEEEEcCCHHH
Confidence            578999997 999999999999998   788999987543

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=96.52  E-value=0.0042  Score=50.22  Aligned_cols=74  Identities=11%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc--ccCCC--ceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--DSWAN--NVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~--~~~~~--~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      .++++++|.|+ |+.|++++-.|.+.|. +|++++|+..+...  .....  +...+.  ..+...+.+.+..+|+||++
T Consensus       125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~--~~~~~~~~~~~~~~divINa  201 (283)
T PRK14027        125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVV--GVDARGIEDVIAAADGVVNA  201 (283)
T ss_pred             cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEE--ecCHhHHHHHHhhcCEEEEc
Confidence            45689999998 9999999999999986 78899997644211  10100  111111  11222333345679999988


Q ss_pred             cc
Q 028890          129 VG  130 (202)
Q Consensus       129 a~  130 (202)
                      ..
T Consensus       202 Tp  203 (283)
T PRK14027        202 TP  203 (283)
T ss_pred             CC
Confidence            65

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.51  E-value=0.022  Score=47.09  Aligned_cols=73  Identities=15%  Similarity=0.054  Sum_probs=46.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---CccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~  130 (202)
                      .+.+|+|+|+ |.+|...++.+...|. +|+++++++.+.... ..-+.+.+ .|..+. ++.+..+   ++|++|.+.|
T Consensus       169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a-~~lGa~~v-i~~~~~-~~~~~~~~~g~~D~vid~~G  244 (343)
T PRK09880        169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSPRSLSLA-REMGADKL-VNPQND-DLDHYKAEKGYFDVSFEVSG  244 (343)
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-HHcCCcEE-ecCCcc-cHHHHhccCCCCCEEEECCC
Confidence            4679999986 9999999998888898 688888876442111 11122221 233332 2333222   4899999988


Q ss_pred             c
Q 028890          131 G  131 (202)
Q Consensus       131 ~  131 (202)
                      .
T Consensus       245 ~  245 (343)
T PRK09880        245 H  245 (343)
T ss_pred             C
Confidence            4

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.51  E-value=0.02  Score=49.28  Aligned_cols=75  Identities=21%  Similarity=0.162  Sum_probs=54.0

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      +|+|.|. |..|...++.|.++|++|.+.++++.....    .....++++..+.-.+.+.+...+.+.|.||...|...
T Consensus         2 ~v~viG~-G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~   80 (459)
T PRK02705          2 IAHVIGL-GRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPW   80 (459)
T ss_pred             eEEEEcc-CHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCC
Confidence            6899997 999999999999999999999977543221    12233666665543344555566778999999888643

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.51  E-value=0.012  Score=47.20  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=41.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC--CCeEEE-EecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR--GLTVAS-LSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~-l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ++++.|.|. |.+|+.+++.|.+.  ++++.. .+|++..........+..       -.+++++++.++|+|+.|+++
T Consensus         1 mmrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~-------~~~~~~ell~~~DvVvi~a~~   71 (265)
T PRK13304          1 MLKIGIVGC-GAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAK-------ACLSIDELVEDVDLVVECASV   71 (265)
T ss_pred             CCEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCe-------eECCHHHHhcCCCEEEEcCCh
Confidence            368999996 99999999999886  356544 455443211100001111       112345555789999999864

>PLN00203 glutamyl-tRNA reductase

Probab=96.50  E-value=0.0039  Score=54.52  Aligned_cols=74  Identities=16%  Similarity=0.205  Sum_probs=51.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccC-CCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+++|+|.|+ |.+|..+++.|...|. +|++++|+..+...... .++..+.   +...+++.+++.++|+||.+.+.
T Consensus       264 l~~kkVlVIGA-G~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~---~~~~~dl~~al~~aDVVIsAT~s  339 (519)
T PLN00203        264 HASARVLVIGA-GKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEII---YKPLDEMLACAAEADVVFTSTSS  339 (519)
T ss_pred             CCCCEEEEEeC-HHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceE---eecHhhHHHHHhcCCEEEEccCC
Confidence            56789999998 9999999999999996 79999998654211110 0122111   12334566778899999988764

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=96.50  E-value=0.021  Score=46.40  Aligned_cols=74  Identities=19%  Similarity=0.061  Sum_probs=47.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC--HhhHHHHh-cCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEAL-DGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~-~~~d~vi~~a~~  131 (202)
                      +.+++|.|++|.+|..+++.+...|.+|+++++++.+.... ..-++..+ .|..+  .+.+.+.- .++|+++.+.|.
T Consensus       147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~v-~~~~~~~~~~~~~~~~~~~d~vld~~g~  223 (326)
T cd08289         147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYL-KKLGAKEV-IPREELQEESIKPLEKQRWAGAVDPVGG  223 (326)
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHH-HHcCCCEE-EcchhHHHHHHHhhccCCcCEEEECCcH
Confidence            56999999999999999999999999999998876542111 11122211 12222  22333332 258999988763

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.49  E-value=0.0099  Score=47.91  Aligned_cols=59  Identities=19%  Similarity=0.251  Sum_probs=46.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.+|.+|+-++..|+++|+.|++.. +..+                     ++.+..+++|+||.+.|..
T Consensus       155 ~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~-s~t~---------------------~l~~~~~~ADIVI~avg~~  212 (284)
T PRK14179        155 ELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTH-SRTR---------------------NLAEVARKADILVVAIGRG  212 (284)
T ss_pred             CCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEEC-CCCC---------------------CHHHHHhhCCEEEEecCcc
Confidence            45789999999999999999999999999998862 1111                     2456677889998888854


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      +
T Consensus       213 ~  213 (284)
T PRK14179        213 H  213 (284)
T ss_pred             c
Confidence            3

>PRK14852 hypothetical protein; Provisional

Probab=96.49  E-value=0.043  Score=51.17  Aligned_cols=100  Identities=14%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc----------------------ccCCC--ceeEEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR----------------------DSWAN--NVIWHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~----------------------~~~~~--~~~~~~~  107 (202)
                      +..+|+|.|. |++|..+++.|...|. ++++++.+.-.  +..                      ...++  +++.+..
T Consensus       331 ~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~  409 (989)
T PRK14852        331 LRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPE  409 (989)
T ss_pred             hcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEec
Confidence            4679999997 9999999999999996 67777654311  000                      01133  3444544


Q ss_pred             cCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+ +++.++++++++|+||.+.-.+.         ...-..+.+.|.+.++ .+|+.++
T Consensus       410 ~I-~~en~~~fl~~~DiVVDa~D~~~---------~~~rr~l~~~c~~~~I-P~I~ag~  457 (989)
T PRK14852        410 GV-AAETIDAFLKDVDLLVDGIDFFA---------LDIRRRLFNRALELGI-PVITAGP  457 (989)
T ss_pred             CC-CHHHHHHHhhCCCEEEECCCCcc---------HHHHHHHHHHHHHcCC-CEEEeec
Confidence            45 56778889999999997764321         1122244566777775 6666665

>PRK13243 glyoxylate reductase; Reviewed

Probab=96.48  E-value=0.0091  Score=49.42  Aligned_cols=68  Identities=18%  Similarity=0.168  Sum_probs=50.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...++++.|.|- |.||+.+++.|...|++|++.+|........  ..++        ...+++++++++|+|+.+...
T Consensus       147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~--~~~~--------~~~~l~ell~~aDiV~l~lP~  214 (333)
T PRK13243        147 DVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRTRKPEAEK--ELGA--------EYRPLEELLRESDFVSLHVPL  214 (333)
T ss_pred             CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCCCChhhHH--HcCC--------EecCHHHHHhhCCEEEEeCCC
Confidence            357899999997 9999999999999999999998865332100  0111        123467788899999988864

>PLN02256 arogenate dehydrogenase

Probab=96.48  E-value=0.0077  Score=49.21  Aligned_cols=69  Identities=20%  Similarity=0.250  Sum_probs=46.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh-cCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-DGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~d~vi~~a~~  131 (202)
                      +.++++|.|.|. |.+|..+++.|.+.|++|++++++.......  ..++..    ..+   ..+++ .++|+||.+..+
T Consensus        33 ~~~~~kI~IIG~-G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~--~~gv~~----~~~---~~e~~~~~aDvVilavp~  102 (304)
T PLN02256         33 KSRKLKIGIVGF-GNFGQFLAKTFVKQGHTVLATSRSDYSDIAA--ELGVSF----FRD---PDDFCEEHPDVVLLCTSI  102 (304)
T ss_pred             cCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECccHHHHHH--HcCCee----eCC---HHHHhhCCCCEEEEecCH
Confidence            346789999995 9999999999999999999999875321111  112221    223   33333 368999988763

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.47  E-value=0.037  Score=46.37  Aligned_cols=107  Identities=17%  Similarity=0.112  Sum_probs=63.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCcee-EEEcc-----CCCHhhHHHHhcCccE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVI-WHQGN-----LLSSDSWKEALDGVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~-~~~~D-----~~~~~~~~~~~~~~d~  124 (202)
                      |+|.|.|. |++|....--|.+.||+|+|++.++.+-..      ....++++ +++-+     +.=-.+++++++..|+
T Consensus         1 MkI~viGt-GYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv   79 (414)
T COG1004           1 MKITVIGT-GYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADV   79 (414)
T ss_pred             CceEEECC-chHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCE
Confidence            68899995 999999999999999999999988654110      00111111 00001     1111235677888999


Q ss_pred             eEEccccCCCCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          125 VISCVGGFGSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       125 vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      +|-+.|.....+...+  ..-...+++...+...+ ++|.+=|
T Consensus        80 ~fIavgTP~~~dg~aD--l~~V~ava~~i~~~~~~~~vvV~KS  120 (414)
T COG1004          80 VFIAVGTPPDEDGSAD--LSYVEAVAKDIGEILDGKAVVVIKS  120 (414)
T ss_pred             EEEEcCCCCCCCCCcc--HHHHHHHHHHHHhhcCCCeEEEEcC
Confidence            9999986544433333  33333334444443323 6666655

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=96.46  E-value=0.025  Score=50.26  Aligned_cols=72  Identities=18%  Similarity=0.211  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      .+.+++|+|.|+ |.+|+.+++.+.+.|++|++++.+++..... . . -..+.+|+.|.+.+.++.+++|++...
T Consensus        19 ~~~~k~IgIIGg-Gqlg~mla~aA~~lG~~Vi~ld~~~~apa~~-~-A-D~~~v~~~~D~~~l~~~a~~~dvIt~e   90 (577)
T PLN02948         19 GVSETVVGVLGG-GQLGRMLCQAASQMGIKVKVLDPLEDCPASS-V-A-ARHVVGSFDDRAAVREFAKRCDVLTVE   90 (577)
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchhh-h-C-ceeeeCCCCCHHHHHHHHHHCCEEEEe
Confidence            367789999998 8999999999999999999998765422111 1 1 134557889999998888889987543

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=96.45  E-value=0.048  Score=44.47  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=64.6

Q ss_pred             EEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------c---cCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           61 VLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        61 VtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      |.|+ |.+|..++..|+..+.  ++..++++.+....      .   ....++++..   .+    .+.++++|+||.+|
T Consensus         1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~---~~----~~~~~daDivVita   72 (299)
T TIGR01771         1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRS---GD----YSDCKDADLVVITA   72 (299)
T ss_pred             CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEec---CC----HHHHCCCCEEEECC
Confidence            4575 9999999999998875  78999986543211      0   1112233322   12    34678999999999


Q ss_pred             ccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          130 GGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       130 ~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      |....    ....+..|..-...+.+.+.+++.+ .++.+|.
T Consensus        73 g~~rk~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        73 GAPQKPGETRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            96432    2356677888888888888887755 4555543

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=96.45  E-value=0.0065  Score=41.38  Aligned_cols=88  Identities=23%  Similarity=0.281  Sum_probs=56.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      .++++++|+|| |.+|..-++.|++.|++|+++.... .    .....+++..-++      ++.+++.+.||-+.+.. 
T Consensus         5 l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~~-~----~~~~~i~~~~~~~------~~~l~~~~lV~~at~d~-   71 (103)
T PF13241_consen    5 LKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPEI-E----FSEGLIQLIRREF------EEDLDGADLVFAATDDP-   71 (103)
T ss_dssp             -TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESSE-H----HHHTSCEEEESS-------GGGCTTESEEEE-SS-H-
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCch-h----hhhhHHHHHhhhH------HHHHhhheEEEecCCCH-
Confidence            47889999999 9999999999999999999998764 1    0114555554443      23367888887554321 


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                                .....+.+.|++.+  .+++++.
T Consensus        72 ----------~~n~~i~~~a~~~~--i~vn~~D   92 (103)
T PF13241_consen   72 ----------ELNEAIYADARARG--ILVNVVD   92 (103)
T ss_dssp             ----------HHHHHHHHHHHHTT--SEEEETT
T ss_pred             ----------HHHHHHHHHHhhCC--EEEEECC
Confidence                      11224456666654  4666654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.42  E-value=0.014  Score=46.82  Aligned_cols=59  Identities=17%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.+..+|+-++..|+++|+.|+.+.....                      .+.+..+++|+||.++|-.
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~----------------------~l~~~~~~ADIvIsAvGkp  212 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK----------------------NLKEVCKKADILVVAIGRP  212 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC----------------------CHHHHHhhCCEEEEcCCCc
Confidence            457899999999999999999999999999987754321                      1456667889999888854


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      +
T Consensus       213 ~  213 (278)
T PRK14172        213 K  213 (278)
T ss_pred             C
Confidence            3

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.41  E-value=0.015  Score=40.50  Aligned_cols=85  Identities=19%  Similarity=0.250  Sum_probs=49.0

Q ss_pred             CeEEEEccC---ChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           57 EKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        57 ~~vlVtGa~---G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      |+|.|.|++   +..|..+++.|.++|++|+.+.-+....      .+...       ..++.+.-..+|.++.+..+  
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i------~G~~~-------y~sl~e~p~~iDlavv~~~~--   65 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI------LGIKC-------YPSLAEIPEPIDLAVVCVPP--   65 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE------TTEE--------BSSGGGCSST-SEEEE-S-H--
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE------CcEEe-------eccccCCCCCCCEEEEEcCH--
Confidence            579999987   7789999999999999999886443221      11111       11222212467877766643  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                                ..+..+++.|.+.|++.+++.++
T Consensus        66 ----------~~~~~~v~~~~~~g~~~v~~~~g   88 (116)
T PF13380_consen   66 ----------DKVPEIVDEAAALGVKAVWLQPG   88 (116)
T ss_dssp             ----------HHHHHHHHHHHHHT-SEEEE-TT
T ss_pred             ----------HHHHHHHHHHHHcCCCEEEEEcc
Confidence                      22335577777778888888776

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.41  E-value=0.026  Score=45.17  Aligned_cols=32  Identities=28%  Similarity=0.436  Sum_probs=27.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-CCeEEEEec
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSR   88 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r   88 (202)
                      ++|.|.|++|.+|+.+++.+.+. +.++.++..
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d   34 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE   34 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence            68999999999999999999875 778877543

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.41  E-value=0.01  Score=38.25  Aligned_cols=34  Identities=32%  Similarity=0.670  Sum_probs=30.7

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      +++|.|| |++|-.++..|.+.|.+|+++.|.+..
T Consensus         1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5789998 999999999999999999999998654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.38  E-value=0.015  Score=46.91  Aligned_cols=59  Identities=17%  Similarity=0.251  Sum_probs=46.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.+..+|+-++..|+++|+.|+++-+...                      .+.+..+++|+||.++|-.
T Consensus       152 ~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~----------------------~l~~~~~~ADIvIsAvGkp  209 (287)
T PRK14173        152 PLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ----------------------DLPAVTRRADVLVVAVGRP  209 (287)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC----------------------CHHHHHhhCCEEEEecCCc
Confidence            457899999999999999999999999999987654321                      1455667788888888854


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      +
T Consensus       210 ~  210 (287)
T PRK14173        210 H  210 (287)
T ss_pred             C
Confidence            3

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.37  E-value=0.016  Score=46.69  Aligned_cols=58  Identities=16%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.+..+|+-++..|+.+|+.|+++.....                      ++.+..+++|+||.+.|..
T Consensus       161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T~----------------------~l~~~~~~ADIvv~AvG~p  218 (287)
T PRK14176        161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFTD----------------------DLKKYTLDADILVVATGVK  218 (287)
T ss_pred             CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccCC----------------------CHHHHHhhCCEEEEccCCc
Confidence            457899999999999999999999999999988764321                      1455667788888888753

>PRK07411 hypothetical protein; Validated

Probab=96.37  E-value=0.072  Score=45.10  Aligned_cols=99  Identities=17%  Similarity=0.109  Sum_probs=62.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC--ccc----------------------ccCCC--ceeEEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS--SLR----------------------DSWAN--NVIWHQ  106 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~--~~~----------------------~~~~~--~~~~~~  106 (202)
                      .+..+|+|.|+ |++|..+++.|...|. ++++++.+.-.  ...                      ...++  +++.+.
T Consensus        36 L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~  114 (390)
T PRK07411         36 LKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYE  114 (390)
T ss_pred             HhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEe
Confidence            35679999998 9999999999999997 77777765321  000                      00123  344444


Q ss_pred             ccCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       107 ~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..++ ++...+.+.++|+||.|....           ..-..+-++|.+.++ .+|+.+.
T Consensus       115 ~~~~-~~~~~~~~~~~D~Vvd~~d~~-----------~~r~~ln~~~~~~~~-p~v~~~~  161 (390)
T PRK07411        115 TRLS-SENALDILAPYDVVVDGTDNF-----------PTRYLVNDACVLLNK-PNVYGSI  161 (390)
T ss_pred             cccC-HHhHHHHHhCCCEEEECCCCH-----------HHHHHHHHHHHHcCC-CEEEEEE
Confidence            4443 445667788999999987532           112234466766663 5665554

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=96.37  E-value=0.013  Score=49.90  Aligned_cols=68  Identities=16%  Similarity=0.126  Sum_probs=48.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+++|+|.|+ |.||..+++.+...|.+|+++++++.+.... ...++..+     +   +++++.++|+||-+.|.
T Consensus       200 l~GktVvViG~-G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A-~~~G~~~~-----~---~~e~v~~aDVVI~atG~  267 (413)
T cd00401         200 IAGKVAVVAGY-GDVGKGCAQSLRGQGARVIVTEVDPICALQA-AMEGYEVM-----T---MEEAVKEGDIFVTTTGN  267 (413)
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECChhhHHHH-HhcCCEEc-----c---HHHHHcCCCEEEECCCC
Confidence            46889999998 9999999999999999999988876542211 11233222     1   23455678999988763

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=96.36  E-value=0.01  Score=49.05  Aligned_cols=66  Identities=20%  Similarity=0.260  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++|.|.|. |.||+.+++.|...|++|++.+|++....     ...       .-.++++++++++|+|+.+...
T Consensus       143 ~l~g~~VgIIG~-G~IG~~vA~~L~~~G~~V~~~d~~~~~~~-----~~~-------~~~~~l~ell~~aDiVil~lP~  208 (330)
T PRK12480        143 PVKNMTVAIIGT-GRIGAATAKIYAGFGATITAYDAYPNKDL-----DFL-------TYKDSVKEAIKDADIISLHVPA  208 (330)
T ss_pred             ccCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCChhHhh-----hhh-------hccCCHHHHHhcCCEEEEeCCC
Confidence            357789999997 99999999999999999999998754311     000       0123577888899998877754

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.36  E-value=0.016  Score=46.71  Aligned_cols=59  Identities=12%  Similarity=0.163  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.+..+|+-++..|+++|+.|+.+.....                      ++.+..+++|+||.++|-.
T Consensus       156 ~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~----------------------~l~~~~~~ADIvIsAvGk~  213 (284)
T PRK14177        156 DVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ----------------------NLPSIVRQADIIVGAVGKP  213 (284)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC----------------------CHHHHHhhCCEEEEeCCCc
Confidence            457899999999999999999999999999987764321                      1455667888888888854


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      +
T Consensus       214 ~  214 (284)
T PRK14177        214 E  214 (284)
T ss_pred             C
Confidence            3

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.36  E-value=0.023  Score=49.13  Aligned_cols=74  Identities=14%  Similarity=0.155  Sum_probs=51.1

Q ss_pred             CCCCeEEEEccCChhHHH-HHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSH-ICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~-l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .++++|+|.|. |..|.+ +++.|.++|++|++.+.+...........++.+..+.  ++    +.++++|.||...|..
T Consensus         5 ~~~~~v~viG~-G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~--~~----~~~~~~d~vv~spgi~   77 (461)
T PRK00421          5 RRIKRIHFVGI-GGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGH--DA----ENIKDADVVVYSSAIP   77 (461)
T ss_pred             CCCCEEEEEEE-chhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCC--CH----HHCCCCCEEEECCCCC
Confidence            45678999998 889999 7999999999999999765432111222245554322  22    2346799999999975


Q ss_pred             CC
Q 028890          133 GS  134 (202)
Q Consensus       133 ~~  134 (202)
                      .+
T Consensus        78 ~~   79 (461)
T PRK00421         78 DD   79 (461)
T ss_pred             CC
Confidence            43

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.36  E-value=0.0085  Score=41.91  Aligned_cols=72  Identities=15%  Similarity=0.212  Sum_probs=42.7

Q ss_pred             eEEEEccCChhHHHHHHHHHHC-CCeEEEE-ecCCCCc-ccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           58 KLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSS-LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l-~r~~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ++.|+|++|.+|..+++.|.+. ++++.++ .++.... ......+++.-+..+..+.+.+.  ..++|+||.|.+.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~DvV~~~~~~   75 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFE--ELAVDIVFLALPH   75 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChh--hcCCCEEEEcCCc
Confidence            5789999999999999999995 7888877 4332111 11111122221111112223333  2579999999865

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	1e-27
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	3e-27
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	6e-27
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	1e-26
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	2e-24
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	6e-20
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	1e-19
1xq6_A	253	Unknown protein; structural genomics, protein stru	7e-19
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	1e-18
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	1e-18
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	1e-18
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	1e-16
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	1e-15
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	1e-15
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	2e-15
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	3e-15
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	6e-14
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	2e-13
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	2e-13
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	3e-12
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	5e-12
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	6e-12
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	7e-12
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	1e-11
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	1e-11
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	4e-11
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	4e-11
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	5e-11
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	9e-11
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	1e-10
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	4e-10
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	6e-10
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	1e-09
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	1e-09
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	2e-09
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	3e-09
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	4e-09
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	5e-09
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	7e-09
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	4e-08
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	7e-08
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	8e-08
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	1e-07
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	2e-07
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	2e-07
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	4e-07
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	4e-07
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	9e-07
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	1e-06
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	2e-06
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	2e-06
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	3e-06
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	8e-06
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	1e-05
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	1e-05
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	1e-05
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	1e-04
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	4e-04
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	4e-04
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	5e-04
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	5e-04
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	7e-04
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	8e-04

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227

 Score =  103 bits (258), Expect = 1e-27
 Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 2/110 (1%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K++++G +GFVGS +  EAL+RG  V ++ R            ++   + ++ S D   E
Sbjct: 6   KIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKI--KIENEHLKVKKADVSSLDEVCE 63

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
              G  AVIS      +N  +Y       +  I    + GV RF+ +  A
Sbjct: 64  VCKGADAVISAFNPGWNNPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGA 113

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* Length = 206

 Score =  101 bits (254), Expect = 3e-27
 Identities = 28/130 (21%), Positives = 44/130 (33%), Gaps = 6/130 (4%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ + G  G  G     +A+  G  V  L R   S L            G++L +    +
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS-SRLPSEGPRPAHVVVGDVLQAADVDK 63

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA----DFGVAN 173
            + G  AVI  +G     S    +      N + A    GV + V  ++A    D     
Sbjct: 64  TVAGQDAVIVLLGTRNDLSP-TTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVP 122

Query: 174 YLLQGYYEGK 183
             LQ   +  
Sbjct: 123 PRLQAVTDDH 132

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} Length = 219

 Score =  101 bits (253), Expect = 6e-27
 Identities = 23/111 (20%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNL-LSSDSWK 116
           K+ ++G  G VG  + +        + + +R      +    NNV     ++  + +   
Sbjct: 2   KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVE---QVPQYNNVKAVHFDVDWTPEEMA 58

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           + L G+ A+I+  G  G +  + K++    +  ++AA +  VKRF+ +S  
Sbjct: 59  KQLHGMDAIINVSGSGGKS--LLKVDLYGAVKLMQAAEKAEVKRFILLSTI 107

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342

 Score =  102 bits (257), Expect = 1e-26
 Identities = 25/119 (21%), Positives = 37/119 (31%), Gaps = 9/119 (7%)

Query: 53  PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS 112
           P    K  VLG  G +G H  R     G  +  + R   S ++             +L  
Sbjct: 10  PGAHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPS-SQIQRLAYLEPECRVAEMLDH 68

Query: 113 DSWKEALDGVTAVISCVGGFGSNS----YMYKIN--GTANINAIRAASEKGVKRFVYIS 165
              + AL G+  VI   G + S               T       A  +  V R +Y+ 
Sbjct: 69  AGLERALRGLDGVIFSAGYYPSRPRRWQEEVASALGQTNPF--YAACLQARVPRILYVG 125

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} Length = 236

 Score = 95.5 bits (238), Expect = 2e-24
 Identities = 30/133 (22%), Positives = 58/133 (43%), Gaps = 11/133 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR--SSLRDSWANNVIWHQGNLLSSDSW 115
           ++LV+G NG V  ++  E  ++G    ++ R+      LR+  A++++    NL   + +
Sbjct: 23  RVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIV--VANL--EEDF 78

Query: 116 KEALDGVTAVISCVGGFGS--NSYMYKINGTANINAIRAASEKGVKRFVYIS---AADFG 170
             A   + AV+   G            I+    I  I+ A ++G+KRF+ +S     D  
Sbjct: 79  SHAFASIDAVVFAAGSGPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPD 138

Query: 171 VANYLLQGYYEGK 183
                ++ Y   K
Sbjct: 139 QGPMNMRHYLVAK 151

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} Length = 224

 Score = 83.1 bits (205), Expect = 6e-20
 Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 6/111 (5%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ VLG  G  GS I  EA  RG  V ++ R  +   + +                  + 
Sbjct: 2   KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ---KAADRLGATVATLVKEPLVLTEA 58

Query: 118 ALDGVTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            LD V AV+  +   +GS      ++   ++  +             + +A
Sbjct: 59  DLDSVDAVVDALSVPWGSGRGYLHLDFATHL--VSLLRNSDTLAVFILGSA 107

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} Length = 221

 Score = 82.3 bits (203), Expect = 1e-19
 Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 7/110 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ ++G  G  GS I  EA +RG  V ++ R+    +  +   ++   Q ++   D    
Sbjct: 2   KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA-GKITQTHK-DINILQKDIF--DLTLS 57

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            L     V+   G         + + T+  + I   +     R + +  A
Sbjct: 58  DLSDQNVVVDAYGISPDE---AEKHVTSLDHLISVLNGTVSPRLLVVGGA 104

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* Length = 253

 Score = 80.7 bits (199), Expect = 7e-19
 Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 28/153 (18%)

Query: 57  EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
             +LV G +G  G  + ++  +         L RS +   ++          G++  +DS
Sbjct: 5   PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQG--KEKIGGEADVFIGDITDADS 62

Query: 115 WKEALDGVTAVISCVGGFGSNS-------------------YMYKINGTANINAIRAASE 155
              A  G+ A++                             Y  +++     N I AA  
Sbjct: 63  INPAFQGIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKV 122

Query: 156 KGVKRFVYISA-----ADFGVANYLLQGYYEGK 183
            GVK  V + +      D  +           K
Sbjct: 123 AGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWK 155

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313

 Score = 80.7 bits (199), Expect = 1e-18
 Identities = 25/121 (20%), Positives = 43/121 (35%), Gaps = 14/121 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN-------NVIWHQGNLL 110
           ++L++GG G++G  I   ++  G     L R    S  D                + +L 
Sbjct: 6   RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 65

Query: 111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG 170
                 +AL  V  VIS + G          +    +  + A  E G  +    S  +FG
Sbjct: 66  DHQRLVDALKQVDVVISALAGGVL-----SHHILEQLKLVEAIKEAGNIKRFLPS--EFG 118

Query: 171 V 171
           +
Sbjct: 119 M 119

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} Length = 236

 Score = 79.5 bits (196), Expect = 1e-18
 Identities = 20/111 (18%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 58  KLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
            +L+LG  G +  H+  +  D+  +     +R   + +   +  N     G++L+  + K
Sbjct: 25  NVLILGAGGQIARHVINQLADKQTIKQTLFARQ-PAKIHKPYPTNSQIIMGDVLNHAALK 83

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           +A+ G   V + + G   +            + I A     VKR +++ + 
Sbjct: 84  QAMQGQDIVYANLTGEDLD--------IQANSVIAAMKACDVKRLIFVLSL 126

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A Length = 242

 Score = 79.9 bits (197), Expect = 1e-18
 Identities = 25/129 (19%), Positives = 49/129 (37%), Gaps = 11/129 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
            + +LG +G  G  + +E L++GL   V  + R  + +  +    NV     +    D +
Sbjct: 20  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRR-KLTFDEEAYKNVNQEVVDFEKLDDY 78

Query: 116 KEALDGVTAVISCVGGF----GSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV 171
             A  G      C+G      G+  +  +++    + +   A   G K F  +S+     
Sbjct: 79  ASAFQGHDVGFCCLGTTRGKAGAEGF-VRVDRDYVLKSAELAKAGGCKHFNLLSSK---G 134

Query: 172 ANYLLQGYY 180
           A+      Y
Sbjct: 135 ADKSSNFLY 143

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 Length = 308

 Score = 75.3 bits (185), Expect = 1e-16
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 19/122 (15%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--------LRDSWANNVIWHQGNL 109
           ++L++G  G++G H+ + +LD G     L R   +S        L    A+      G++
Sbjct: 6   RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 65

Query: 110 LSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF 169
               S  EA+  V  VIS VG              + +N I+A  E G  +  + S  +F
Sbjct: 66  DDHASLVEAVKNVDVVISTVGSLQI---------ESQVNIIKAIKEVGTVKRFFPS--EF 114

Query: 170 GV 171
           G 
Sbjct: 115 GN 116

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* Length = 318

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 16/118 (13%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSR--SGRSSLRDSW-ANNVIWHQGNLLSSDS 114
           K+L+ GG G++G+H+ + +L  G      +R  S +++L D + +   I  +G L   + 
Sbjct: 13  KILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEK 72

Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGV 171
             E +  V  VIS +                    + A    G +KRF+    +DFGV
Sbjct: 73  LVELMKKVDVVISALAFPQI---------LDQFKILEAIKVAGNIKRFLP---SDFGV 118

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} Length = 307

 Score = 72.6 bits (178), Expect = 1e-15
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 20/123 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW---------ANNVIWHQGN 108
           K+L+LG  G +G HI   ++  G    +L R   ++              +  VI  +G+
Sbjct: 4   KILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGD 63

Query: 109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           +   ++  +A+  V  VI   G                +  I+A  E G  +  + S  +
Sbjct: 64  INDHETLVKAIKQVDIVICAAGRLL---------IEDQVKIIKAIKEAGNVKKFFPS--E 112

Query: 169 FGV 171
           FG+
Sbjct: 113 FGL 115

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 3r14_A* Length = 221

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 19/113 (16%), Positives = 38/113 (33%), Gaps = 13/113 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDR-GLTVASLSR--SGRSSLRDSWANNVIWHQGNLLSSDS 114
            + +LG  G +   +    L    + +    R    R          V   +G+  +   
Sbjct: 7   YITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGX 66

Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            ++A+     V       GS          A+I  ++A S   ++R + +S A
Sbjct: 67  LEQAVTNAEVVFVGAMESGS--------DMASI--VKALSRXNIRRVIGVSMA 109

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} Length = 321

 Score = 71.5 bits (175), Expect = 3e-15
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 19/123 (15%)

Query: 57  EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW--------ANNVIWHQGN 108
           EK+++ GG G++G  + R +L         +R        S         +  V   +G 
Sbjct: 5   EKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGE 64

Query: 109 LLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAAD 168
           +   +     L  V  VIS +              ++ I+ I A    G  +    S  D
Sbjct: 65  MEEHEKMVSVLKQVDIVISALPFPMI---------SSQIHIINAIKAAGNIKRFLPS--D 113

Query: 169 FGV 171
           FG 
Sbjct: 114 FGC 116

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346

 Score = 68.1 bits (166), Expect = 6e-14
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 48  TVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANN 101
           TV+  P P  ++L+ G  GF+G  +   +LD       L+R G  S       +      
Sbjct: 2   TVSPVPSPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKG 61

Query: 102 VIWHQGNLLSSDSWKEALDG--VTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVK 159
            I   G +   ++ ++ L    +  V+S VGG               I  ++A    G  
Sbjct: 62  AIIVYGLINEQEAMEKILKEHEIDIVVSTVGGESI---------LDQIALVKAMKAVGTI 112

Query: 160 RFVYIS 165
           +    S
Sbjct: 113 KRFLPS 118

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 Length = 215

 Score = 65.4 bits (160), Expect = 2e-13
 Identities = 19/116 (16%), Positives = 40/116 (34%), Gaps = 13/116 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           ++L+ G  G  G H+    L       V + +R   +         +    G L  ++  
Sbjct: 7   RVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH-----PRLDNPVGPL--AELL 59

Query: 116 KEALDGVTAVISCVG----GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            +    +     C+G      GS      ++    +   + A E G + ++ +SA 
Sbjct: 60  PQLDGSIDTAFCCLGTTIKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSAL 115

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364

 Score = 66.7 bits (162), Expect = 2e-13
 Identities = 23/141 (16%), Positives = 46/141 (32%), Gaps = 17/141 (12%)

Query: 60  LVLGGNGFVGSHICREALDRGL-----TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           L++G  G +G+ +               V  ++R  R +  +     + + Q ++   D 
Sbjct: 5   LIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNP--INYVQCDISDPDD 62

Query: 115 WKEALDGVTAVISCVGGFGSNSY----MYKINGTANINAIRAASE--KGVKRFVYISAAD 168
            +  L  +T V        +N        + N     N + A       +K     +   
Sbjct: 63  SQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQT--- 119

Query: 169 FGVANYLLQGYYEGKVLSSDV 189
            G  +Y+      GK+ S D 
Sbjct: 120 -GRKHYMGPFESYGKIESHDP 139

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379

 Score = 63.5 bits (155), Expect = 3e-12
 Identities = 35/145 (24%), Positives = 56/145 (38%), Gaps = 9/145 (6%)

Query: 31  STDSNKVDEP-LKVEEAETVNVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS 89
              +N  D      +E E     P  + K+ + G  GF+ SHI R     G  V +    
Sbjct: 3   MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIAS-DW 61

Query: 90  GRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVI---SCVGGFGSNSY----MYKIN 142
            ++           +H  +L   ++  +  +GV  V    + +GG G        +   N
Sbjct: 62  KKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNN 121

Query: 143 GTANINAIRAASEKGVKRFVYISAA 167
              + N I AA   G+KRF Y S+A
Sbjct: 122 TMISFNMIEAARINGIKRFFYASSA 146

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267

 Score = 62.0 bits (151), Expect = 5e-12
 Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 20/117 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           +LLV G  G +G  +          +     S      D    N    Q +L  +++   
Sbjct: 5   RLLVTGAAGQLGRVMRERLAPMAEILRLADLSP----LDPAGPNEECVQCDLADANAVNA 60

Query: 118 ALDGVTAVI---------SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            + G   ++                 N     I G  N+    AA   G  R V+ S
Sbjct: 61  MVAGCDGIVHLGGISVEKPFEQILQGN-----IIGLYNL--YEAARAHGQPRIVFAS 110

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A Length = 342

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 22/165 (13%)

Query: 54  PPSEKLLVLGGNGFVGSHICREALDRGL----TVASLSRSG--RSSLRDSWANNVIWHQ- 106
           P    +LV G NGFV SH+  + L+ G     T  S S+    +      +         
Sbjct: 9   PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVV 68

Query: 107 GNLLSSDSWKEALDGVTAVI---SCVGGFGSNSYMYK--INGTANINAIRAAS-EKGVKR 160
            ++L   ++ E + G   V    S V        +    I GT  +NA+RAA+    VKR
Sbjct: 69  EDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEVVTPAIGGT--LNALRAAAATPSVKR 126

Query: 161 FVYISAADFGVANYLLQGYYEGKVLS----SDVAACQSVLGSSRC 201
           FV  S+    V+  + +   EG  L     +  +  ++       
Sbjct: 127 FVLTSST---VSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESD 168

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D Length = 287

 Score = 61.9 bits (151), Expect = 7e-12
 Identities = 23/113 (20%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 59  LLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           + V G  G +G  + +  L +     + ++ R+            V    G+    +S +
Sbjct: 3   IAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNV-EKASTLADQGVEVRHGDYNQPESLQ 61

Query: 117 EALDGVTAV--ISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           +A  GV+ +  IS         Y   +    + N ++AA + GVK   Y   A
Sbjct: 62  KAFAGVSKLLFIS------GPHYDNTLLIVQHANVVKAARDAGVKHIAYTGYA 108

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 23/121 (19%), Positives = 35/121 (28%), Gaps = 24/121 (19%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSR--SGRSSLRDSWANNVIWHQGNLLSSD 113
             +LLV G  G VGS I          V        G +        +      +L  + 
Sbjct: 2   LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA------EAHEEIVACDLADAQ 55

Query: 114 SWKEALDGVTAVI---------SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYI 164
           +  + +     +I                +N     I G  N+    AA   G  R V+ 
Sbjct: 56  AVHDLVKDCDGIIHLGGVSVERPWNDILQAN-----IIGAYNL--YEAARNLGKPRIVFA 108

Query: 165 S 165
           S
Sbjct: 109 S 109

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} Length = 289

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 24/113 (21%), Positives = 43/113 (38%), Gaps = 10/113 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
            +++ G  G +G+HI  +A+   +       R+    + D W   V   Q +  + +S  
Sbjct: 2   NIMLTGATGHLGTHITNQAIANHIDHFHIGVRN-VEKVPDDWRGKVSVRQLDYFNQESMV 60

Query: 117 EALDGVTAV--ISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           EA  G+  V  I       S  +          N + AA + GV   ++I   
Sbjct: 61  EAFKGMDTVVFIP------SIIHPSFKRIPEVENLVYAAKQSGVAHIIFIGYY 107

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A Length = 299

 Score = 59.7 bits (145), Expect = 4e-11
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 6/129 (4%)

Query: 59  LLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWAN-NVIWHQGNLLSSDSWK 116
           ++V GG G  G  + R  L+ G   V  ++R+ R               QG+       +
Sbjct: 8   VVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIME 67

Query: 117 EALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA--ADFGVANY 174
            AL+G  A       + S S   ++           A   G+   VY          A  
Sbjct: 68  LALNGAYATFIVTNYWESCSQEQEV--KQGKLLADLARRLGLHYVVYSGLENIKKLTAGR 125

Query: 175 LLQGYYEGK 183
           L   +++GK
Sbjct: 126 LAAAHFDGK 134

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A Length = 338

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 32/131 (24%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 50  NVPPPPSEKLLVLGGNGFVGSHICREALDRGL----TVASLSRSGR-SSLRDSW-ANNVI 103
              P   +   V+GG GFV S + +  L +G     TV       + S L +     ++ 
Sbjct: 3   TQHPIGKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLK 62

Query: 104 WHQGNLLSSDSWKEALDGVTAVI---SCVGGFGSNSY---MYK--INGTANINAIRAASE 155
             + +L    S++  + G   V    + V  F S      M K  I G  N+  ++A + 
Sbjct: 63  IFRADLTDELSFEAPIAGCDFVFHVATPV-HFASEDPENDMIKPAIQGVVNV--MKACTR 119

Query: 156 -KGVKRFVYIS 165
            K VKR +  S
Sbjct: 120 AKSVKRVILTS 130

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313

 Score = 59.4 bits (145), Expect = 5e-11
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
            ++V GG GF+GSH+  + L     +    +LS SG     +         + +L + D 
Sbjct: 3   LIVVTGGAGFIGSHVV-DKLSESNEIVVIDNLS-SGN---EEFVNEAARLVKADLAADD- 56

Query: 115 WKEALDGVTAVI-----SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYIS-AA 167
            K+ L G   V        V     N   +Y+ N  A    + A  + GV R V+ S + 
Sbjct: 57  IKDYLKGAEEVWHIAANPDVRIGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTST 116

Query: 168 DFGVANYL 175
            +G A  +
Sbjct: 117 VYGEAKVI 124

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311

 Score = 58.7 bits (143), Expect = 9e-11
 Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 25/130 (19%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++LV GG GF+GSHI  + L RGL VA   +L+   R ++       V + + +L   + 
Sbjct: 2   RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPK----GVPFFRVDLRDKEG 57

Query: 115 WKEALDG--VTAVI-----SCVGGFGSNS-----YMYKINGTANINAIRAASEKGVKRFV 162
            + A      T V      + V      S       +++N    +N + A  + GV++ V
Sbjct: 58  VERAFREFRPTHVSHQAAQASVK----VSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLV 113

Query: 163 YIS--AADFG 170
           + S   A +G
Sbjct: 114 FASTGGAIYG 123

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311

 Score = 58.3 bits (142), Expect = 1e-10
 Identities = 26/119 (21%), Positives = 41/119 (34%), Gaps = 25/119 (21%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASL--SRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           K+ V GG GF+G ++     + G T   L  S   ++       N+  +   +    D  
Sbjct: 4   KIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNKA------INDYEYRVSDYTLED-L 56

Query: 116 KEALDGVTAVI---------SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
              L+ V AV+           +  F  N        T N+    A  E  +   VY S
Sbjct: 57  INQLNDVDAVVHLAATRGSQGKISEFHDN-----EILTQNL--YDACYENNISNIVYAS 108

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330

 Score = 57.2 bits (139), Expect = 4e-10
 Identities = 27/129 (20%), Positives = 52/129 (40%), Gaps = 15/129 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++L+ GG G +GS++    L +G  +    + +   R  L       +   +G++  +  
Sbjct: 22  RILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLP--PVAGLSVIEGSVTDAGL 79

Query: 115 WKEALDG--VTAVI-----SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS-A 166
            + A D    T V+            +      + G+  IN  +AAS+ GVKR +    A
Sbjct: 80  LERAFDSFKPTHVVHSAAAYKDPDDWAEDAATNVQGS--INVAKAASKAGVKRLLNFQTA 137

Query: 167 ADFGVANYL 175
             +G    +
Sbjct: 138 LCYGRPATV 146

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} Length = 322

 Score = 56.5 bits (137), Expect = 6e-10
 Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 26/129 (20%)

Query: 57  EKLLVLGGNGFVGSHICREALDRGLTV-ASLSRSGRSSLRDSWANNVIW----------- 104
            ++ V GG GF+GS I +  L+ G +V  ++    R+        + +            
Sbjct: 2   GRVCVTGGTGFLGSWIIKSLLENGYSVNTTI----RADPERKRDVSFLTNLPGASEKLHF 57

Query: 105 HQGNLLSSDSWKEALDGVTAVISCVGGFGSNS-----YMYK--INGTANINAIRAASE-K 156
              +L + DS+  A++G   +                 + K  ++G   I  ++A    K
Sbjct: 58  FNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGI--LKACVNSK 115

Query: 157 GVKRFVYIS 165
            VKRF+Y S
Sbjct: 116 TVKRFIYTS 124

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* Length = 286

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 60  LVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            + G  G +G ++    +       + ++ R+  +  +   A  +   Q +     +   
Sbjct: 3   AITGATGQLGHYVIESLMKTVPASQIVAIVRNP-AKAQALAAQGITVRQADYGDEAALTS 61

Query: 118 ALDGVTAV--ISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
           AL GV  +  IS                  + N I AA   GVK   Y S  
Sbjct: 62  ALQGVEKLLLISSSEVGQR--------APQHRNVINAAKAAGVKFIAYTSLL 105

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* Length = 337

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 32/125 (25%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGL----TVASLSRSGR-SSLRDSW--ANNVIWHQGN 108
           SE + V G +GF+GS +    L+RG     TV   +   +   L D      ++   + +
Sbjct: 5   SETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKAD 64

Query: 109 LLSSDSWKEALDGVTAVISCVGGFGSNS-----YMYK--INGTANINAIRAASE-KGVKR 160
           L    S+ EA+ G T V          S      + K  I G   I  +++ +  K V+R
Sbjct: 65  LADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGI--MKSCAAAKTVRR 122

Query: 161 FVYIS 165
            V+ S
Sbjct: 123 LVFTS 127

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 29/132 (21%), Positives = 51/132 (38%), Gaps = 32/132 (24%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTV-----------ASLSRSGRSSLRDSWANNVIWHQ 106
             L+ G  GF+GS++    L     V            +L    RS + +   +N  + Q
Sbjct: 29  VWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEV-RSLVSEKQWSNFKFIQ 87

Query: 107 GNLLSSDSWKEALDGVTAVI--SCVGG-----------FGSNSYMYKINGTANINAIRAA 153
           G++ + D    A  GV  V+  + +G              +N     I+G  N+  + AA
Sbjct: 88  GDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATN-----IDGFLNM--LIAA 140

Query: 154 SEKGVKRFVYIS 165
            +  V+ F Y +
Sbjct: 141 RDAKVQSFTYAA 152

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+ + G  G +GSHI    L+RG  V    + +   R  L+D    N+ + +G++     
Sbjct: 23  KVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH--PNLTFVEGSIADHAL 80

Query: 115 WKEALDGV--TAVI----SCVGGFGSNSYMYKINGTANI----NAIRAASEKGVKRFVYI 164
             + +  +   AV+    S       +   +  +   N     N ++AA +  V RFVY 
Sbjct: 81  VNQLIGDLQPDAVVHTAAS-----YKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYF 135

Query: 165 SAA 167
             A
Sbjct: 136 QTA 138

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} Length = 286

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 8/112 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+L+ G  G +G  + R    +G  V  L RS            V     ++   D+   
Sbjct: 5   KILIAGC-GDLGLELARRLTAQGHEVTGLRRSA-----QPMPAGVQTLIADVTRPDTLAS 58

Query: 118 ALDG-VTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            +      ++ CV     S+ +          N + A     ++   ++S+ 
Sbjct: 59  IVHLRPEILVYCVAASEYSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSST 110

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 25/132 (18%), Positives = 48/132 (36%), Gaps = 32/132 (24%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTV-----------ASLSRSGRSSLRDSWANNVIWHQ 106
             L+ G  GF+GS++  + L     V            +L         + W+    + +
Sbjct: 27  TWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWS-RFCFIE 85

Query: 107 GNLLSSDSWKEALDGVTAVI--SCVGG-----------FGSNSYMYKINGTANINAIRAA 153
           G++    + ++ + GV  V+  + +G              +N     I G  NI  + AA
Sbjct: 86  GDIRDLTTCEQVMKGVDHVLHQAALGSVPRSIVDPITTNATN-----ITGFLNI--LHAA 138

Query: 154 SEKGVKRFVYIS 165
               V+ F Y +
Sbjct: 139 KNAQVQSFTYAA 150

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312

 Score = 53.3 bits (129), Expect = 7e-09
 Identities = 30/128 (23%), Positives = 52/128 (40%), Gaps = 16/128 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           +++V GG GF+GSH+  + ++ G  V    +LS SGR   R+    +   H  +L     
Sbjct: 2   RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLS-SGR---REFVNPSAELHVRDLKDYSW 57

Query: 115 WKEALDGVTAVI-----SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYIS-AA 167
                     V        V    +     +  N  A  N +  A + GV+  V+ S + 
Sbjct: 58  GAGI--KGDVVFHFAANPEVRLSTTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSST 115

Query: 168 DFGVANYL 175
            +G A+ +
Sbjct: 116 VYGDADVI 123

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} Length = 516

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 12/69 (17%), Positives = 20/69 (28%), Gaps = 11/69 (15%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            + + G  G VG  +  +    G  V  L R               W        +   +
Sbjct: 149 TVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK------PGKRFWD-----PLNPASD 197

Query: 118 ALDGVTAVI 126
            LDG   ++
Sbjct: 198 LLDGADVLV 206

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330

 Score = 50.5 bits (122), Expect = 7e-08
 Identities = 28/125 (22%), Positives = 53/125 (42%), Gaps = 16/125 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
            +L+ GG G++GSH  ++ +D GL+V    +L      ++ +       ++ G+L     
Sbjct: 3   SILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHEDAITE----GAKFYNGDLRDKAF 58

Query: 115 WKEALD--GVTAVI-----SCVGGFGSNSYMYKINGTAN-INAIRAASEKGVKRFVYIS- 165
            ++      + AV+     S VG        Y  N     +  +    E  V +F++ S 
Sbjct: 59  LRDVFTQENIEAVMHFAADSLVGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSST 118

Query: 166 AADFG 170
           AA +G
Sbjct: 119 AATYG 123

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* Length = 352

 Score = 50.2 bits (120), Expect = 8e-08
 Identities = 24/136 (17%), Positives = 46/136 (33%), Gaps = 11/136 (8%)

Query: 53  PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN--NVIWHQGNLL 110
               + + V+G  G  G+ + R A   G  V +   S +  + +      NV   QG LL
Sbjct: 2   AQQKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLL 61

Query: 111 SS-DSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAAD 168
           ++        +G          F + +           +   AA   G ++ ++Y S  D
Sbjct: 62  NNVPLMDTLFEGAHLA------FINTTSQAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115

Query: 169 FGVAN-YLLQGYYEGK 183
             +   +     +  K
Sbjct: 116 HSLYGPWPAVPMWAPK 131

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} Length = 478

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 33/157 (21%), Positives = 53/157 (33%), Gaps = 41/157 (26%)

Query: 46  AETVNVPPPPSEKLLVL--GGNGFVGSHICREALDR---GLTVASLSRSGR--------- 91
           A  VN+P P  E   VL  G  GF+G ++  E L R      +  L R+           
Sbjct: 61  ATAVNLPGPSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLE 120

Query: 92  -----------SSLRDSWANNVIWHQGNL------LSSDSWKEALDGVTAVISCVGG--- 131
                         ++  A+ +    G+       L    W+   + V  ++        
Sbjct: 121 KTFDSGDPELLRHFKELAADRLEVVAGDKSEPDLGLDQPMWRRLAETVDLIVDS--AAMV 178

Query: 132 -FGSNSYMYKIN--GTANINAIRAASEKGVKRFVYIS 165
                  ++  N  GTA +  IR A    +K F Y+S
Sbjct: 179 NAFPYHELFGPNVAGTAEL--IRIALTTKLKPFTYVS 213

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321

 Score = 48.7 bits (117), Expect = 2e-07
 Identities = 21/116 (18%), Positives = 38/116 (32%), Gaps = 14/116 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++L+ GG GF+G H+ R  +  G  V     L                 + +  +L  + 
Sbjct: 9   RILITGGAGFIGGHLARALVASGEEVTVLDDLR-VPP---MIPPEGTGKFLEKPVL--EL 62

Query: 115 WKEALDGVTAVI--SCVGG---FGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            +  L  V  V   +              Y  N  +  + +   +  GV + V  S
Sbjct: 63  EERDLSDVRLVYHLASHKSVPRSFKQPLDYLDNVDSGRHLLALCTSVGVPKVVVGS 118

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317

 Score = 48.9 bits (117), Expect = 2e-07
 Identities = 21/119 (17%), Positives = 45/119 (37%), Gaps = 12/119 (10%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G +G +G+ +     ++      ++    S +       + +   ++ + D    A+
Sbjct: 3   LVTGSSGQIGTELVPYLAEKYGKKNVIA----SDIVQRDTGGIKFITLDVSNRDEIDRAV 58

Query: 120 D--GVTAVISCVGGFGSNS-----YMYKINGTANINAIRAASEKGVKRFVYIS-AADFG 170
           +   + A+    G   +         YK+N     N + AA +  V++ V  S    FG
Sbjct: 59  EKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFG 117

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377

 Score = 48.5 bits (116), Expect = 4e-07
 Identities = 23/125 (18%), Positives = 45/125 (36%), Gaps = 21/125 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
            ++V+GG GFVGS++ +  L+ G      V +L  + + ++ D     V + + ++    
Sbjct: 34  NVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDH--PAVRFSETSITDDA 91

Query: 114 SWKEALDGVTAVI----------SCVGGFGSNSYMYKINGTANINAIRAASE-KGVKRFV 162
                 D    V           S       +    + N    +         K +K+ V
Sbjct: 92  LLASLQDEYDYVFHLATYHGNQSSIHDPLADH----ENNTLTTLKLYERLKHFKRLKKVV 147

Query: 163 YISAA 167
           Y +A 
Sbjct: 148 YSAAG 152

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 24/118 (20%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           K+L+LG NGF+G H+ +  L+     +    +       L       + + +G++  +  
Sbjct: 26  KVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH--ERMHFFEGDITINKE 83

Query: 115 WKEALDG-VTAVISCVGGFGSNSYMY------KINGTANINAIRAASEKGVKRFVYIS 165
           W E        ++  V      +Y+       +++  AN+  +R+A + G K  V+ S
Sbjct: 84  WVEYHVKKCDVILPLVAIATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPS 140

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357

 Score = 47.3 bits (113), Expect = 9e-07
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 9/118 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLT----VASLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
            ++V GG GF+GS+I +   D+G+T    V +L    +              + + L   
Sbjct: 48  MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI 107

Query: 114 SWKEALDGVTAVI---SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYISAA 167
              E    V A+    +C      +  YM   N   +   +    E+ +  F+Y S+A
Sbjct: 108 MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSA 164

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} Length = 286

 Score = 46.4 bits (110), Expect = 1e-06
 Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 18/114 (15%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRS--GRSSLRDSWANNVIWHQGNLLSSD 113
           +  LL  G  G+    + R    +G  +   SR+     ++R S A  ++W         
Sbjct: 5   TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLW--------P 55

Query: 114 SWKEALDGVTAVISCVG-GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
             + +LDGVT ++       G +  +      A +    AA     +   Y+S 
Sbjct: 56  GEEPSLDGVTHLLISTAPDSGGDPVL------AALGDQIAARAAQFRWVGYLST 103

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 12/110 (10%), Positives = 33/110 (30%), Gaps = 21/110 (19%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            +++ G  GFVG ++  +                        ++ I+        +  + 
Sbjct: 2   NIVITGAKGFVGKNLKADLTSTT-------------------DHHIFEVHRQTKEEELES 42

Query: 118 ALDGVTAVI--SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
           AL     ++  + V     +      N +   + +   +    K  + +S
Sbjct: 43  ALLKADFIVHLAGVNRPEHDKEFSLGNVSYLDHVLDILTRNTKKPAILLS 92

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 22/124 (17%), Positives = 45/124 (36%), Gaps = 9/124 (7%)

Query: 50  NVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN-NVIWHQGN 108
                   ++L+LG NGF+G+H+    L            G  ++     + +  + +G+
Sbjct: 309 ACTARRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGD 368

Query: 109 LLSSDSWKEALDGVT-AVISCVGGFGSNSYM------YKINGTANINAIRAASEKGVKRF 161
           +     W E        V+  V       Y       ++++   N+  IR   +   KR 
Sbjct: 369 ISIHSEWIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRI 427

Query: 162 VYIS 165
           ++ S
Sbjct: 428 IFPS 431

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310

 Score = 45.3 bits (108), Expect = 3e-06
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 9/116 (7%)

Query: 60  LVLGGNGFVGSHICREALDRGLT----VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           +V GG GF+GS+I +   D+G+T    V +L    +              + + L     
Sbjct: 3   IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMA 62

Query: 116 KEALDGVTAVI---SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYISAA 167
            E    V A+    +C      +  YM   N   +   +    E+ +  F+Y S+A
Sbjct: 63  GEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIP-FLYASSA 117

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           ++L+LG NGF+G+H+    L      +    +     S   +    +  + +G++     
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNH--PHFHFVEGDISIHSE 59

Query: 115 WKEALDG-VTAVISCVGGFGSNSYMY------KINGTANINAIRAASEKGVKRFVYIS 165
           W E        V+  V       Y        +++   N+  IR   +   KR ++ S
Sbjct: 60  WIEYHVKKCDVVLPLVAIATPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPS 116

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 18/131 (13%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRS------GRSSLRDSWANNVIWHQGNLLS 111
            + ++G  G VG  + +  +  G                +      ++  V     +L +
Sbjct: 16  HIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPAGFSGAVDARAADLSA 75

Query: 112 SDSWKEALD-GVTAVI---SCVGGFGSNSYM--YKIN--GTANI-NAIRAASEKG--VKR 160
               ++ ++     +    + V G     +   Y+IN  GT  + +AIR A+ K     R
Sbjct: 76  PGEAEKLVEARPDVIFHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPR 135

Query: 161 FVYIS-AADFG 170
            V+ S  A FG
Sbjct: 136 VVFTSSIAVFG 146

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312

 Score = 43.4 bits (103), Expect = 1e-05
 Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 25/131 (19%)

Query: 56  SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
           + K+L++G  G +G+ + ++     G     +  S    L     N+  +   N L  + 
Sbjct: 2   NPKILIIGACGQIGTELTQKLRKLYGTEN--VIASDIRKLNTDVVNSGPFEVVNALDFNQ 59

Query: 115 WKE--------------ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKR 160
            +               AL   TA  +    +  N     +N   ++  +  A  K +K+
Sbjct: 60  IEHLVEVHKITDIYLMAALLSATAEKNPAFAWDLN-----MNSLFHV--LNLAKAKKIKK 112

Query: 161 FVYIS-AADFG 170
             + S  A FG
Sbjct: 113 IFWPSSIAVFG 123

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} Length = 118

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 22/107 (20%), Positives = 31/107 (28%), Gaps = 19/107 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS 114
            + V+G  G +G  I           +TVA    +  + L       V   Q +      
Sbjct: 7   NICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM---GVATKQVDAKDEAG 62

Query: 115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRF 161
             +AL G  AVIS                       +AA   G   F
Sbjct: 63  LAKALGGFDAVISA------------APFFLTPIIAKAAKAAGAHYF 97

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 30/135 (22%), Positives = 55/135 (40%), Gaps = 24/135 (17%)

Query: 52  PPPPSEKLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR--DSWAN-NVIWH 105
               S+ +LV GG G++GSH   E ++ G       +LS S   S+   +     ++ ++
Sbjct: 7   SESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFY 66

Query: 106 QGNLLSSDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAIRA 152
           + +L      ++ L+ V       +VI       VG        Y Y  N    +  +  
Sbjct: 67  EVDLCD----RKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRY-YHNNILGTVVLLEL 121

Query: 153 ASEKGVKRFVYISAA 167
             +  V +FV+ S+A
Sbjct: 122 MQQYNVSKFVFSSSA 136

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404

 Score = 39.4 bits (92), Expect = 4e-04
 Identities = 6/26 (23%), Positives = 13/26 (50%)

Query: 58 KLLVLGGNGFVGSHICREALDRGLTV 83
          +++V+GG+G+ G         +   V
Sbjct: 13 RVMVIGGDGYCGWATALHLSKKNYEV 38

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348

 Score = 39.0 bits (92), Expect = 4e-04
 Identities = 37/137 (27%), Positives = 57/137 (41%), Gaps = 30/137 (21%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASL-----SRSGRSSLRDSWA-------NNVI 103
           +EK+LV GG G++GSH   E L+ G     +     +  G  SL +S          +V 
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61

Query: 104 WHQGNLLSSDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAI 150
           + + ++L     + AL  +       AVI       VG        Y Y++N T  I  +
Sbjct: 62  FEEMDILD----QGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDY-YRVNLTGTIQLL 116

Query: 151 RAASEKGVKRFVYISAA 167
                 GVK  V+ S+A
Sbjct: 117 EIMKAHGVKNLVFSSSA 133

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338

 Score = 39.0 bits (92), Expect = 5e-04
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 24/129 (18%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR--DSWAN-NVIWHQGNLLS 111
           ++LV GG+G++GSH C + L  G  V    +L  S RS L   +     +  + +G++ +
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61

Query: 112 SDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAIRAASEKGV 158
               +  +  +        VI       VG        Y Y  N    +  I A     V
Sbjct: 62  ----EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEY-YDNNVNGTLRLISAMRAANV 116

Query: 159 KRFVYISAA 167
           K F++ S+A
Sbjct: 117 KNFIFSSSA 125

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 34/151 (22%), Positives = 50/151 (33%), Gaps = 43/151 (28%)

Query: 58  KLLVLGGNGFVGSHICREAL-DRGLTVA---SLSRSGRSSLRDSWANNVIWHQGNLLSSD 113
           ++LV GG G++GSH  R  L D   +V    SL  +   S       NV           
Sbjct: 4   RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63

Query: 114 SW---------------KEALDGV-------TAVI-----SCVGGFGSNS------YMYK 140
                            ++ L+GV        AV+       VG     S      Y Y 
Sbjct: 64  PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVG----ESVRDPLKY-YD 118

Query: 141 INGTANINAIRAASEKGVKRFVYIS-AADFG 170
            N    +  ++A       + ++ S AA FG
Sbjct: 119 NNVVGILRLLQAMLLHKCDKIIFSSSAAIFG 149

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 34/129 (26%), Positives = 56/129 (43%), Gaps = 24/129 (18%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSSLR--DSWAN-NVIWHQGNLLS 111
            +LV GG G++GSH   E L  G  V    +L  S R ++   +        +H+ ++  
Sbjct: 7   TILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSD 66

Query: 112 SDSWKEALDGV------TAVISC-----VGGFGSN--SYMYKINGTANINAIRAASEKGV 158
               + AL  +      TA I       VG   +    Y Y+ N  + ++ +R   E+ V
Sbjct: 67  ----ERALARIFDAHPITAAIHFAALKAVGESVAKPIEY-YRNNLDSLLSLLRVMRERAV 121

Query: 159 KRFVYISAA 167
           KR V+ S+A
Sbjct: 122 KRIVFSSSA 130

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 19/130 (14%), Positives = 39/130 (30%), Gaps = 22/130 (16%)

Query: 58  KLLVLGGNGFVGSHICREALDRGL--------------TVASLSRSGRSSLRDSWANNVI 103
            +L+ GG GFVGS++     +                   ++   S     ++       
Sbjct: 12  TILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGE 71

Query: 104 WHQGNLLSSDSWKEALD-GVTAVISCVGGFGSNS-----YMYKINGTANINAIRAASEKG 157
               ++ +    +         +          +      + K N  A +N +  A  K 
Sbjct: 72  VIAADINNPLDLRRLEKLHFDYLFHQ-AAVSDTTMLNQELVMKTNYQAFLNLLEIARSKK 130

Query: 158 VKRFVYISAA 167
            K  +Y S+A
Sbjct: 131 AK-VIYASSA 139

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	99.94
3rft_A	267	Uronate dehydrogenase; apoenzyme, rossmann fold, N	99.94
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	99.94
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	99.94
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	99.93
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	99.93
3slg_A	372	PBGP3 protein; structural genomics, seattle struct	99.93
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	99.93
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	99.93
3sxp_A	362	ADP-L-glycero-D-mannoheptose-6-epimerase; rossman	99.93
2c20_A	330	UDP-glucose 4-epimerase; carbohydrate metabolism,	99.93
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	99.93
2q1w_A	333	Putative nucleotide sugar epimerase/ dehydratase;	99.93
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	99.93
2pk3_A	321	GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor	99.92
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	99.92
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	99.92
1r6d_A	337	TDP-glucose-4,6-dehydratase; rossmann fold, short-	99.92
2q1s_A	377	Putative nucleotide sugar epimerase/ dehydratase;	99.92
3ay3_A	267	NAD-dependent epimerase/dehydratase; glucuronic ac	99.92
1oc2_A	348	DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos	99.92
4egb_A	346	DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce	99.92
2hrz_A	342	AGR_C_4963P, nucleoside-diphosphate-sugar epimeras	99.92
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	99.92
2hun_A	336	336AA long hypothetical DTDP-glucose 4,6-dehydrat;	99.92
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	99.92
3ko8_A	312	NAD-dependent epimerase/dehydratase; isomerase, UD	99.92
1ek6_A	348	UDP-galactose 4-epimerase; short-chain dehydrogena	99.92
1rkx_A	357	CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD;	99.92
1rpn_A	335	GDP-mannose 4,6-dehydratase; short-chain dehydroge	99.91
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	99.91
1gy8_A	397	UDP-galactose 4-epimerase; oxidoreductase; HET: NA	99.91
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	99.91
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	99.91
3ehe_A	313	UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC,	99.91
2yy7_A	312	L-threonine dehydrogenase; thermolabIle, flavobact	99.91
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	99.91
2bll_A	345	Protein YFBG; decarboxylase, short chain dehydroge	99.91
2c29_D	337	Dihydroflavonol 4-reductase; flavonoids, short deh	99.91
2p5y_A	311	UDP-glucose 4-epimerase; TTHA0591, structural geno	99.91
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	99.91
1kew_A	361	RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo	99.91
1n7h_A	381	GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR,	99.91
1t2a_A	375	GDP-mannose 4,6 dehydratase; structural genomics c	99.91
3ajr_A	317	NDP-sugar epimerase; L-threonine dehydrogenase, L-	99.91
1udb_A	338	Epimerase, UDP-galactose-4-epimerase; isomerase; H	99.9
2p4h_X	322	Vestitone reductase; NADPH-dependent reductase, is	99.9
1i24_A	404	Sulfolipid biosynthesis protein SQD1; SDR, short-c	99.9
1db3_A	372	GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya	99.9
1vl0_A	292	DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s	99.9
2ydy_A	315	Methionine adenosyltransferase 2 subunit beta; oxi	99.9
2rh8_A	338	Anthocyanidin reductase; flavonoids, rossmann fold	99.9
4dqv_A	478	Probable peptide synthetase NRP (peptide synthase;	99.9
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	99.89
3sc6_A	287	DTDP-4-dehydrorhamnose reductase; RFBD, structural	99.89
1xq6_A	253	Unknown protein; structural genomics, protein stru	99.89
3nzo_A	399	UDP-N-acetylglucosamine 4,6-dehydratase; structura	99.89
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	99.89
2a35_A	215	Hypothetical protein PA4017; alpha-beta-alpha sand	99.89
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	99.89
1e6u_A	321	GDP-fucose synthetase; epimerase/reductase, SDR, R	99.89
2x6t_A	357	ADP-L-glycero-D-manno-heptose-6-epimerase; isomera	99.89
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	99.89
1n2s_A	299	DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold	99.89
4b8w_A	319	GDP-L-fucose synthase; oxidoreductase; HET: NAP GD	99.89
2b69_A	343	UDP-glucuronate decarboxylase 1; UDP-glucoronic ac	99.89
1z7e_A	660	Protein aRNA; rossmann fold, OB-like fold, hydrola	99.88
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	99.88
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	99.88
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	99.88
4f6l_B	508	AUSA reductase domain protein; thioester reductase	99.88
3un1_A	260	Probable oxidoreductase; structural genomics, PSI-	99.88
4f6c_A	427	AUSA reductase domain protein; thioester reductase	99.88
3rih_A	293	Short chain dehydrogenase or reductase; structural	99.88
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	99.88
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	99.88
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	99.88
1z45_A	699	GAL10 bifunctional protein; epimerase, mutarotase,	99.88
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	99.88
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	99.88
2ggs_A	273	273AA long hypothetical DTDP-4-dehydrorhamnose red	99.88
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	99.88
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.88
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	99.88
2fwm_X	250	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e	99.88
2dtx_A	264	Glucose 1-dehydrogenase related protein; rossmann	99.88
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	99.87
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	99.87
2dkn_A	255	3-alpha-hydroxysteroid dehydrogenase; oxidoreducta	99.87
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	99.87
1eq2_A	310	ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin	99.87
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	99.87
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	99.87
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	99.87
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.87
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	99.87
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	99.87
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	99.87
3imf_A	257	Short chain dehydrogenase; structural genomics, in	99.87
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	99.87
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	99.87
4dqx_A	277	Probable oxidoreductase protein; structural genomi	99.87
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	99.87
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	99.87
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	99.87
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	99.87
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	99.87
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	99.87
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	99.87
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	99.87
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	99.87
1spx_A	278	Short-chain reductase family member (5L265); paral	99.87
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	99.87
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	99.87
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	99.87
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.87
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	99.87
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	99.87
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	99.87
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	99.86
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	99.86
1xq1_A	266	Putative tropinone reducatse; structural genomics,	99.86
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	99.86
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	99.86
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	99.86
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	99.86
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	99.86
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	99.86
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	99.86
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	99.86
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	99.86
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	99.86
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	99.86
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	99.86
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	99.86
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	99.86
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	99.86
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	99.86
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.86
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	99.86
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	99.86
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	99.86
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	99.86
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	99.86
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	99.86
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	99.86
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	99.86
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	99.86
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	99.86
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	99.86
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	99.86
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	99.86
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	99.86
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	99.86
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	99.86
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	99.86
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	99.86
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	99.86
3ezl_A	256	Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA	99.86
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.86
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	99.86
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	99.86
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	99.86
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	99.86
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	99.86
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	99.86
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	99.86
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	99.86
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	99.86
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	99.86
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	99.86
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	99.85
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	99.85
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	99.85
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	99.85
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	99.85
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	99.85
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	99.85
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	99.85
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	99.85
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	99.85
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	99.85
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	99.85
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	99.85
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	99.85
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	99.85
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	99.85
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	99.85
3cxt_A	291	Dehydrogenase with different specificities; rossma	99.85
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	99.85
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	99.85
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	99.85
4e4y_A	244	Short chain dehydrogenase family protein; structur	99.85
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	99.85
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	99.85
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	99.85
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	99.85
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	99.85
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	99.85
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	99.85
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	99.85
3gk3_A	269	Acetoacetyl-COA reductase; acetoacetyl-CO reductas	99.85
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	99.85
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	99.85
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	99.85
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	99.85
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	99.85
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	99.85
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	99.85
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	99.85
3tl3_A	257	Short-chain type dehydrogenase/reductase; ssgcid,	99.85
1xkq_A	280	Short-chain reductase family member (5D234); parra	99.85
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	99.84
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	99.84
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	99.84
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	99.84
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	99.84
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	99.84
1fjh_A	257	3alpha-hydroxysteroid dehydrogenase/carbonyl reduc	99.84
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	99.84
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	99.84
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	99.84
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	99.84
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	99.84
4e3z_A	272	Putative oxidoreductase protein; PSI-biology, stru	99.84
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	99.84
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	99.84
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	99.84
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	99.84
2v6g_A	364	Progesterone 5-beta-reductase; tyrosine-dependent	99.84
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	99.84
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	99.84
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	99.84
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	99.84
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	99.84
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	99.84
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	99.84
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	99.84
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	99.84
4iiu_A	267	3-oxoacyl-[acyl-carrier protein] reductase; struct	99.84
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	99.84
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	99.84
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	99.84
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	99.84
1xhl_A	297	Short-chain dehydrogenase/reductase family member	99.84
3u5t_A	267	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.84
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	99.84
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	99.84
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	99.84
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	99.83
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	99.83
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	99.83
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	99.83
1jtv_A	327	17 beta-hydroxysteroid dehydrogenase type 1; stero	99.83
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	99.83
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	99.83
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	99.83
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	99.83
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	99.83
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	99.83
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	99.83
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	99.83
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	99.83
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	99.83
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	99.83
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	99.83
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	99.82
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	99.82
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.82
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	99.82
3uce_A	223	Dehydrogenase; rossmann fold, oxidoreductase; HET:	99.82
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	99.82
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	99.82
3icc_A	255	Putative 3-oxoacyl-(acyl carrier protein) reducta;	99.82
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	99.82
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	99.82
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	99.81
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	99.81
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	99.81
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	99.81
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	99.81
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	99.81
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	99.81
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	99.8
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	99.8
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	99.8
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	99.8
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	99.8
2z5l_A	511	Tylkr1, tylactone synthase starter module and modu	99.79
2fr1_A	486	Erythromycin synthase, eryai; short chain dehydrog	99.78
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	99.78
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	99.78
3u0b_A	454	Oxidoreductase, short chain dehydrogenase/reducta	99.78
3mje_A	496	AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.	99.77
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	99.76
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	99.76
3qp9_A	525	Type I polyketide synthase pikaii; rossmann fold,	99.74
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	99.74
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	99.7
3lt0_A	329	Enoyl-ACP reductase; triclosan, triclosan variant,	99.67
1d7o_A	297	Enoyl-[acyl-carrier protein] reductase (NADH) PRE;	99.66
2o2s_A	315	Enoyl-acyl carrier reductase; enoyl reductase, tri	99.66
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	99.65
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.64
3zu3_A	405	Putative reductase YPO4104/Y4119/YP_4011; oxidored	99.63
2ptg_A	319	Enoyl-acyl carrier reductase; apicomplexa, enoyl (	99.61
2et6_A	604	(3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox	99.6
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.59
3s8m_A	422	Enoyl-ACP reductase; rossmann fold, oxidoreductase	99.58
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	99.58
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	99.57
4eue_A	418	Putative reductase CA_C0462; TER, biofuel, synthet	99.57
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	99.57
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	99.52
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	99.46
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	99.29
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	99.28
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	99.1
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	99.08
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	99.06
4ggo_A	401	Trans-2-enoyl-COA reductase; rossmann fold, oxidor	99.02
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	98.98
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	98.98
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.95
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.93
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.91
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.88
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.81
2gk4_A	232	Conserved hypothetical protein; alpha-beta-alpha s	98.81
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.79
1u7z_A	226	Coenzyme A biosynthesis bifunctional protein coabc	98.78
1id1_A	153	Putative potassium channel protein; RCK domain, E.	98.73
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.72
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	98.69
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	98.6
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.57
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.48
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.44
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	98.38
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	98.38
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.32
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.21
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	98.16
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	98.12
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	98.12
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.09
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	97.98
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.98
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	97.97
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	97.97
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	97.96
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	97.95
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.94
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	97.93
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.92
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.92
2hjs_A	340	USG-1 protein homolog; aspartate-semialdehyde dehy	97.92
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	97.92
1lnq_A	336	MTHK channels, potassium channel related protein;	97.9
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.89
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.88
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	97.88
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.88
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.82
1p9o_A	313	Phosphopantothenoylcysteine synthetase; ligase; 2.	97.8
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.79
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	97.75
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.72
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	97.7
4eye_A	342	Probable oxidoreductase; structural genomics, niai	97.7
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.69
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.67
3gms_A	340	Putative NADPH:quinone reductase; structural genom	97.67
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	97.66
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	97.66
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.64
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	97.62
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	97.61
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	97.61
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.6
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	97.59
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.58
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.57
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.57
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	97.57
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	97.56
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.56
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	97.55
1t4b_A	367	Aspartate-semialdehyde dehydrogenase; asadh, HOSR,	97.55
3gxh_A	157	Putative phosphatase (DUF442); YP_001181608.1, str	97.54
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	97.54
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.54
3pwk_A	366	Aspartate-semialdehyde dehydrogenase; NADP binding	97.53
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	97.53
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	97.53
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	97.5
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	97.5
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	97.5
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.5
3tl2_A	315	Malate dehydrogenase; center for structural genomi	97.5
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	97.49
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	97.48
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	97.48
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	97.48
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	97.47
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.47
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.47
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.47
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.47
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	97.45
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	97.42
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.41
4g65_A	461	TRK system potassium uptake protein TRKA; structur	97.41
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.4
3uw3_A	377	Aspartate-semialdehyde dehydrogenase; structural g	97.4
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.39
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.39
3pzr_A	370	Aspartate-semialdehyde dehydrogenase; NADP, oxidor	97.39
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.39
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	97.35
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	97.35
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.34
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	97.34
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.34
3ax6_A	380	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.32
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	97.32
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.31
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.31
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.31
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.3
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	97.29
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	97.29
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	97.28
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.27
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	97.24
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	97.24
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.24
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.22
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.21
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.21
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.2
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.2
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.19
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.18
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.18
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	97.16
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.16
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	97.16
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	97.16
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	97.15
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	97.13
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	97.12
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.12
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	97.12
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.12
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.12
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	97.11
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.11
3l07_A	285	Bifunctional protein fold; structural genomics, ID	97.1
3tz6_A	344	Aspartate-semialdehyde dehydrogenase; asadh, ASD,	97.09
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.09
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	97.08
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.08
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.08
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.07
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.07
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.06
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.06
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.05
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.04
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	97.04
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.03
2yv3_A	331	Aspartate-semialdehyde dehydrogenase; aspartate pa	97.03
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	97.03
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.03
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	97.02
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	97.02
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	97.02
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.02
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.01
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	97.01
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	97.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	97.0
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	97.0
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.99
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.99
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	96.99
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.98
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.97
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.95
3qha_A	296	Putative oxidoreductase; seattle structural genomi	96.95
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.95
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	96.95
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.94
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	96.94
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.94
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.93
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.93
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.93

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=2.6e-26  Score=177.37  Aligned_cols=138  Identities=22%  Similarity=0.263  Sum_probs=115.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      .+|+|+||||+|+||++++++|+++|++|++++|++.+...  ...+++++.+|+.|++++.++++++|+||||||....
T Consensus         3 ~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~   80 (227)
T 3dhn_A            3 KVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI--ENEHLKVKKADVSSLDEVCEVCKGADAVISAFNPGWN   80 (227)
T ss_dssp             CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC--CCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC---
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh--ccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcCCCC
Confidence            36899999999999999999999999999999998654321  2378999999999999999999999999999998665


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc---------CCcCCcchHHHHHHHHHHHHHhc
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV---------ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~---------~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....+++|+.++.++++++++.++++|||+|| .+++.         +..+.+.|+.+|..+|.+++.+.
T Consensus        81 ~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~e~~~~~~~  150 (227)
T 3dhn_A           81 NPDIYDETIKVYLTIIDGVKKAGVNRFLMVGGAGSLFIAPGLRLMDSGEVPENILPGVKALGEFYLNFLM  150 (227)
T ss_dssp             ---CCSHHHHHHHHHHHHHHHTTCSEEEEECCSTTSEEETTEEGGGTTCSCGGGHHHHHHHHHHHHHTGG
T ss_pred             ChhHHHHHHHHHHHHHHHHHHhCCCEEEEeCChhhccCCCCCccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence            55688999999999999999999999999999 43332         22356789999999999888775

>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A*

Probab=99.94  E-value=2.2e-26  Score=182.56  Aligned_cols=136  Identities=18%  Similarity=0.119  Sum_probs=118.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC-
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~-  133 (202)
                      ++|+|+||||+|+||++++++|+++|++|++++|++.+..    ..+++++.+|++|++++.++++++|+||||||... 
T Consensus         2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~D~vi~~Ag~~~~   77 (267)
T 3rft_A            2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDPA----GPNEECVQCDLADANAVNAMVAGCDGIVHLGGISVE   77 (267)
T ss_dssp             CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCCC----CTTEEEEECCTTCHHHHHHHHTTCSEEEECCSCCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCcccc----CCCCEEEEcCCCCHHHHHHHHcCCCEEEECCCCcCc
Confidence            3578999999999999999999999999999999875532    46899999999999999999999999999999743 


Q ss_pred             -CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc-----------CCcCCcchHHHHHHHHHHHHHhc
Q 028890          134 -SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV-----------ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~-----------~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                       ++...+++|+.++.++++++++.+.++||++|| .+|+.           +..+.+.|+.+|.++|.+++.+.
T Consensus        78 ~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~g~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~a  151 (267)
T 3rft_A           78 KPFEQILQGNIIGLYNLYEAARAHGQPRIVFASSNHTIGYYPQTERLGPDVPARPDGLYGVSKCFGENLARMYF  151 (267)
T ss_dssp             CCHHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcchHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence             346688999999999999999999999999999 56642           23455789999999999998764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=99.94  E-value=5.6e-26  Score=185.90  Aligned_cols=135  Identities=24%  Similarity=0.279  Sum_probs=115.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..++|+|+||||+||||++++++|+++|++|++++|+...       .+++++.+|+.|++++.++++++|+|||+|+..
T Consensus        16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~   88 (347)
T 4id9_A           16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM   88 (347)
T ss_dssp             -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence            4567899999999999999999999999999999998644       578899999999999999999999999999975


Q ss_pred             CC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc------------CCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 GS----NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV------------ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~------------~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..    +...+++|+.++.+++++|++.++++|||+|| .+|+.            +..+.+.|+.+|.++|++++.+.
T Consensus        89 ~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~  167 (347)
T 4id9_A           89 SWAPADRDRMFAVNVEGTRRLLDAASAAGVRRFVFASSGEVYPENRPEFLPVTEDHPLCPNSPYGLTKLLGEELVRFHQ  167 (347)
T ss_dssp             CSSGGGHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGTTTTSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHHhCCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence            43    25678899999999999999999999999999 67775            22355789999999999999764

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=99.94  E-value=6.9e-26  Score=185.61  Aligned_cols=140  Identities=19%  Similarity=0.223  Sum_probs=118.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC----------CCceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW----------ANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ++|+|+||||+||||++++++|+++|++|++++|..........          ..+++++.+|+.|++++.++++++|+
T Consensus        24 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  103 (351)
T 3ruf_A           24 SPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGVDH  103 (351)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTCSE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCCCE
Confidence            57899999999999999999999999999999997654211100          06899999999999999999999999


Q ss_pred             eEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHH
Q 028890          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSS  187 (202)
Q Consensus       125 vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E  187 (202)
                      |||+||...      ++...+++|+.++.+++++|++.++++|||+|| .+|+...          .+.+.|+.+|.++|
T Consensus       104 Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E  183 (351)
T 3ruf_A          104 VLHQAALGSVPRSIVDPITTNATNITGFLNILHAAKNAQVQSFTYAASSSTYGDHPALPKVEENIGNPLSPYAVTKYVNE  183 (351)
T ss_dssp             EEECCCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred             EEECCccCCcchhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEecHHhcCCCCCCCCccCCCCCCCChhHHHHHHHH
Confidence            999999643      344577999999999999999999999999999 6776433          34578999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      ++++.+.
T Consensus       184 ~~~~~~~  190 (351)
T 3ruf_A          184 IYAQVYA  190 (351)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=99.93  E-value=5.8e-25  Score=177.50  Aligned_cols=134  Identities=22%  Similarity=0.252  Sum_probs=115.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC--
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~--  133 (202)
                      +|+|+||||+|+||++++++|+++|++|++++|++... .   ..+++++.+|+. ++++.++++++|+|||+|+...  
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~-~---~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~~~~~~   76 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK-A---INDYEYRVSDYT-LEDLINQLNDVDAVVHLAATRGSQ   76 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC---------CCEEEECCCC-HHHHHHHTTTCSEEEECCCCCCSS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcc-c---CCceEEEEcccc-HHHHHHhhcCCCEEEEccccCCCC
Confidence            57999999999999999999999999999999983322 2   238899999999 9999999999999999999754  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ++...+++|+.++.+++++|++.++++|||+|| .+|+...          .+.++|+.+|.++|++++.+.
T Consensus        77 ~~~~~~~~n~~~~~~ll~a~~~~~~~r~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  148 (311)
T 3m2p_A           77 GKISEFHDNEILTQNLYDACYENNISNIVYASTISAYSDETSLPWNEKELPLPDLMYGVSKLACEHIGNIYS  148 (311)
T ss_dssp             SCGGGTHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCCGGGCSBCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCCEEEEEccHHHhCCCCCCCCCCCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999999 6776432          345789999999999999864

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=99.93  E-value=4e-25  Score=180.21  Aligned_cols=139  Identities=18%  Similarity=0.141  Sum_probs=113.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC-
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG-  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~-  133 (202)
                      .+|+|+||||+||||++++++|+++|++|++++|+..... .....+++++.+|+.|++++.++++++|+|||+|+... 
T Consensus        12 ~~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~~~~~   90 (342)
T 2x4g_A           12 AHVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQ-RLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAGYYPS   90 (342)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGG-GGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC------
T ss_pred             cCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhh-hhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCccCcC
Confidence            4569999999999999999999999999999999865432 12223789999999999999999999999999999643 


Q ss_pred             ---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc-----------C----CcchHHHHHHHHHHHHHhc
Q 028890          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY-----------L----LQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~-----------~----~~~Y~~sK~~~E~~~~~~~  194 (202)
                         ++...+++|+.++.+++++|++.++++|||+|| .+|+....           +    .+.|+.+|+++|++++.+.
T Consensus        91 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~E~~~~~p~~~~~~~Y~~sK~~~e~~~~~~~  170 (342)
T 2x4g_A           91 RPRRWQEEVASALGQTNPFYAACLQARVPRILYVGSAYAMPRHPQGLPGHEGLFYDSLPSGKSSYVLCKWALDEQAREQA  170 (342)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTCSCEEEECCGGGSCCCTTSSCBCTTCCCSSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEECCHHhhCcCCCCCCCCCCCCCCccccccChHHHHHHHHHHHHHHHh
Confidence               356678999999999999999999999999999 66664332           2    6789999999999999864

>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}

Probab=99.93  E-value=1.3e-25  Score=185.47  Aligned_cols=140  Identities=19%  Similarity=0.246  Sum_probs=119.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCC-CHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++|+|+||||+||||++|+++|+++ |++|++++|+...........+++++.+|+. |++.+.++++++|+|||+|+.
T Consensus        22 m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~v~~~~~Dl~~d~~~~~~~~~~~d~Vih~A~~  101 (372)
T 3slg_A           22 MKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKHERMHFFEGDITINKEWVEYHVKKCDVILPLVAI  101 (372)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGGGGGSTTEEEEECCTTTCHHHHHHHHHHCSEEEECBCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhhhccCCCeEEEeCccCCCHHHHHHHhccCCEEEEcCcc
Confidence            46789999999999999999999998 9999999998765433333468999999999 999999999999999999996


Q ss_pred             CC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchHHHHHHHH
Q 028890          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKVLSS  187 (202)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------------~~~~~Y~~sK~~~E  187 (202)
                      ..      ++...+++|+.++.+++++|++.+ ++|||+|| .+|+...                 .+.+.|+.+|.++|
T Consensus       102 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~-~~~v~~SS~~vyg~~~~~~~~e~~~~~~~~p~~~p~~~Y~~sK~~~E  180 (372)
T 3slg_A          102 ATPATYVKQPLRVFELDFEANLPIVRSAVKYG-KHLVFPSTSEVYGMCADEQFDPDASALTYGPINKPRWIYACSKQLMD  180 (372)
T ss_dssp             CCHHHHHHCHHHHHHHHTTTTHHHHHHHHHHT-CEEEEECCGGGGBSCCCSSBCTTTCCEEECCTTCTTHHHHHHHHHHH
T ss_pred             ccHHHHhhCHHHHHHHHHHHHHHHHHHHHHhC-CcEEEeCcHHHhCCCCCCCCCccccccccCCCCCCCCcHHHHHHHHH
Confidence            54      344577899999999999999999 99999999 6676422                 23347999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      ++++.+.
T Consensus       181 ~~~~~~~  187 (372)
T 3slg_A          181 RVIWGYG  187 (372)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999875

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=99.93  E-value=7.3e-25  Score=181.77  Aligned_cols=140  Identities=21%  Similarity=0.268  Sum_probs=118.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      .++|+|+||||+||||++++++|+++|++|++++|+...... ....+++++.+|+.|++++.++++++|+|||+|+...
T Consensus        27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~v~~~~~Dl~d~~~~~~~~~~~d~Vih~A~~~~  105 (379)
T 2c5a_A           27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT-EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMG  105 (379)
T ss_dssp             TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC-GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECCCCCC
T ss_pred             ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh-hccCCceEEECCCCCHHHHHHHhCCCCEEEECceecC
Confidence            367899999999999999999999999999999998654321 2235789999999999999999999999999999643


Q ss_pred             -------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCc-----------------CCcCCcchHHHHHHHHH
Q 028890          134 -------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGV-----------------ANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       134 -------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~-----------------~~~~~~~Y~~sK~~~E~  188 (202)
                             ++...+++|+.++.+++++|++.++++|||+|| .+|+.                 +..+.+.|+.+|.++|+
T Consensus       106 ~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~~V~~SS~~v~~~~~~~~~~~~~~~E~~~~~~~~~~~Y~~sK~~~E~  185 (379)
T 2c5a_A          106 GMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKLATEE  185 (379)
T ss_dssp             CHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHHHHHH
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeehheeCCCCCCCccCCCcCcccCCCCCCCChhHHHHHHHHH
Confidence                   344577899999999999999999999999999 66663                 22345789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       186 ~~~~~~  191 (379)
T 2c5a_A          186 LCKHYN  191 (379)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998763

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=99.93  E-value=1.9e-25  Score=171.97  Aligned_cols=131  Identities=21%  Similarity=0.299  Sum_probs=112.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC-HhhHHHHhcCccEeEEccccCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEALDGVTAVISCVGGFGSN  135 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~d~vi~~a~~~~~~  135 (202)
                      |+|+||||+|+||++++++|+++|++|++++|++.+...   ..+++++.+|+.| ++++.++++++|+||||||...  
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---~~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~~--   75 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ---YNNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSGG--   75 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC---CTTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCTT--
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh---cCCceEEEecccCCHHHHHHHHcCCCEEEECCcCCC--
Confidence            589999999999999999999999999999998654322   1689999999999 9999999999999999999765  


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc------CCcchHHHHHHHHHHHHH
Q 028890          136 SYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY------LLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~------~~~~Y~~sK~~~E~~~~~  192 (202)
                      ...+++|+.++.+++++|++.++++||++|| ..++....      +.+.|+.+|.++|++++.
T Consensus        76 ~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~e~~~~~~~~Y~~sK~~~e~~~~~  139 (219)
T 3dqp_A           76 KSLLKVDLYGAVKLMQAAEKAEVKRFILLSTIFSLQPEKWIGAGFDALKDYYIAKHFADLYLTK  139 (219)
T ss_dssp             SSCCCCCCHHHHHHHHHHHHTTCCEEEEECCTTTTCGGGCCSHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             CCcEeEeHHHHHHHHHHHHHhCCCEEEEECcccccCCCcccccccccccHHHHHHHHHHHHHHh
Confidence            3478899999999999999999999999999 43432211      257899999999999953

>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori}

Probab=99.93  E-value=8.1e-25  Score=180.24  Aligned_cols=141  Identities=16%  Similarity=0.159  Sum_probs=118.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHH--CCCeEEEEecCCC------------CcccccCCCceeEEEccCCCHhhHHHH-
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALD--RGLTVASLSRSGR------------SSLRDSWANNVIWHQGNLLSSDSWKEA-  118 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~--~g~~V~~l~r~~~------------~~~~~~~~~~~~~~~~D~~~~~~~~~~-  118 (202)
                      .++|+|+||||+||||++++++|++  +|++|++++|...            .........++.++.+|+.|++++.++ 
T Consensus         8 ~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~   87 (362)
T 3sxp_A            8 LENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPSSLGHFKNLIGFKGEVIAADINNPLDLRRLE   87 (362)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CCCCCCGGGGTTCCSEEEECCTTCHHHHHHHT
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchhhhhhhhhccccCceEEECCCCCHHHHHHhh
Confidence            4678999999999999999999999  9999999999765            112222345789999999999999999 


Q ss_pred             hcCccEeEEccccCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------cCCcchHHHHH
Q 028890          119 LDGVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------YLLQGYYEGKV  184 (202)
Q Consensus       119 ~~~~d~vi~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------~~~~~Y~~sK~  184 (202)
                      ..++|+||||||...    ++...+++|+.++.+++++|++.+++ |||+|| .+|+...         .+.++|+.+|.
T Consensus        88 ~~~~D~vih~A~~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~V~~SS~~vyg~~~~~~~E~~~~~p~~~Y~~sK~  166 (362)
T 3sxp_A           88 KLHFDYLFHQAAVSDTTMLNQELVMKTNYQAFLNLLEIARSKKAK-VIYASSAGVYGNTKAPNVVGKNESPENVYGFSKL  166 (362)
T ss_dssp             TSCCSEEEECCCCCGGGCCCHHHHHHHHTHHHHHHHHHHHHTTCE-EEEEEEGGGGCSCCSSBCTTSCCCCSSHHHHHHH
T ss_pred             ccCCCEEEECCccCCccccCHHHHHHHHHHHHHHHHHHHHHcCCc-EEEeCcHHHhCCCCCCCCCCCCCCCCChhHHHHH
Confidence            789999999999643    34567899999999999999999875 999999 6776533         24567999999


Q ss_pred             HHHHHHHHhcc
Q 028890          185 LSSDVAACQSV  195 (202)
Q Consensus       185 ~~E~~~~~~~~  195 (202)
                      ++|++++.+..
T Consensus       167 ~~E~~~~~~~~  177 (362)
T 3sxp_A          167 CMDEFVLSHSN  177 (362)
T ss_dssp             HHHHHHHHTTT
T ss_pred             HHHHHHHHHhc
Confidence            99999998764

>2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis}

Probab=99.93  E-value=8.6e-25  Score=177.56  Aligned_cols=138  Identities=20%  Similarity=0.322  Sum_probs=116.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~  133 (202)
                      ||+|+||||+||||++++++|+++|++|++++|....... ....+++++.+|+.|++++.++++  ++|+|||+|+...
T Consensus         1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~~~d~vih~a~~~~   79 (330)
T 2c20_A            1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHED-AITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSL   79 (330)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG-GSCTTSEEEECCTTCHHHHHHHHHHSCEEEEEECCCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCchh-hcCCCcEEEECCCCCHHHHHHHHhhcCCCEEEECCcccC
Confidence            5799999999999999999999999999999987544222 222478999999999999999998  8999999999753


Q ss_pred             ------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          134 ------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                            ++...+++|+.++.+++++|++.++++|||+|| .+|+...          .+.+.|+.+|.++|++++.+.
T Consensus        80 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~  157 (330)
T 2c20_A           80 VGVSMEKPLQYYNNNVYGALCLLEVMDEFKVDKFIFSSTAATYGEVDVDLITEETMTNPTNTYGETKLAIEKMLHWYS  157 (330)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGGCSCSSSSBCTTSCCCCSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCHHHHHHHHhHHHHHHHHHHHHcCCCEEEEeCCceeeCCCCCCCCCcCCCCCCCChHHHHHHHHHHHHHHHH
Confidence                  345678899999999999999999999999999 6676432          245789999999999998864

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=99.93  E-value=5.4e-25  Score=180.54  Aligned_cols=140  Identities=22%  Similarity=0.230  Sum_probs=117.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc----------CCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS----------WANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ++|+|+||||+||||++++++|+++|++|++++|+........          ...+++++.+|+.|++++.++++++|+
T Consensus        26 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~  105 (352)
T 1sb8_A           26 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY  105 (352)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHHHhcCCCE
Confidence            5689999999999999999999999999999999764311100          025789999999999999999999999


Q ss_pred             eEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHH
Q 028890          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSS  187 (202)
Q Consensus       125 vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E  187 (202)
                      ||||||...      ++...+++|+.++.+++++|++.++++|||+|| .+|+...          .+.++|+.+|.++|
T Consensus       106 vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e  185 (352)
T 1sb8_A          106 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNE  185 (352)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred             EEECCcccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHhcCCCCCCCCCCCCCCCCCChhHHHHHHHH
Confidence            999999753      345678899999999999999999999999999 6676443          24678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       186 ~~~~~~~  192 (352)
T 1sb8_A          186 LYADVFS  192 (352)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica}

Probab=99.93  E-value=1e-24  Score=177.86  Aligned_cols=141  Identities=20%  Similarity=0.256  Sum_probs=115.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCC-CceeEEEccCCCHhhHHHHhcC--ccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA-NNVIWHQGNLLSSDSWKEALDG--VTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~  130 (202)
                      .++|+|+||||+||||++++++|+++|++|++++|+.......... .+++++.+|+.|++++.+++++  +|+||||||
T Consensus        19 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~D~vih~A~   98 (333)
T 2q1w_A           19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDHPNLTFVEGSIADHALVNQLIGDLQPDAVVHTAA   98 (333)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGSCCCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchhhHhhcCCceEEEEeCCCHHHHHHHHhccCCcEEEECce
Confidence            4678999999999999999999999999999999976432221111 5789999999999999999987  999999999


Q ss_pred             cCCCC---ccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccC----cCC-------cCC-cchHHHHHHHHHHHHH-h
Q 028890          131 GFGSN---SYMYKINGTANINAIRAASEKGVKRFVYISA-ADFG----VAN-------YLL-QGYYEGKVLSSDVAAC-Q  193 (202)
Q Consensus       131 ~~~~~---~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~----~~~-------~~~-~~Y~~sK~~~E~~~~~-~  193 (202)
                      .....   ...+++|+.++.+++++|.+.++++|||+|| .+|+    ...       .+. +.|+.+|.++|++++. +
T Consensus        99 ~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~g~~~~~~~~~~~E~~~p~~~~Y~~sK~~~E~~~~~s~  178 (333)
T 2q1w_A           99 SYKDPDDWYNDTLTNCVGGSNVVQAAKKNNVGRFVYFQTALCYGVKPIQQPVRLDHPRNPANSSYAISKSANEDYLEYSG  178 (333)
T ss_dssp             CCSCTTCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGCSCCCSSSBCTTSCCCCTTCHHHHHHHHHHHHHHHHT
T ss_pred             ecCCCccCChHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCcccCCCCcCCCCCCCCCchHHHHHHHHHHHHhhh
Confidence            75431   1117899999999999999999999999999 6776    322       345 7899999999999998 6


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      .
T Consensus       179 ~  179 (333)
T 2q1w_A          179 L  179 (333)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=99.93  E-value=1.1e-24  Score=177.37  Aligned_cols=140  Identities=19%  Similarity=0.251  Sum_probs=116.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHHHhc--CccEeEEcc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a  129 (202)
                      ..++|+|+||||+||||++++++|+++|++|++++|+....... ....+++++.+|+.|++++.++++  ++|+|||||
T Consensus        17 ~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vih~A   96 (330)
T 2pzm_A           17 RGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVVHSA   96 (330)
T ss_dssp             TTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEEECC
Confidence            34678999999999999999999999999999999975432210 111578999999999999999999  999999999


Q ss_pred             ccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc----------CCcchHHHHHHHHHHHHHh
Q 028890          130 GGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY----------LLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       130 ~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~----------~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |....    ... +++|+.++.+++++|.+.++++|||+|| .+|+....          +.+.|+.+|.++|++++.+
T Consensus        97 ~~~~~~~~~~~~-~~~N~~~~~~l~~a~~~~~~~~iV~~SS~~~~~~~~~~~~~~~E~~~~~~~Y~~sK~~~e~~~~~~  174 (330)
T 2pzm_A           97 AAYKDPDDWAED-AATNVQGSINVAKAASKAGVKRLLNFQTALCYGRPATVPIPIDSPTAPFTSYGISKTAGEAFLMMS  174 (330)
T ss_dssp             CCCSCTTCHHHH-HHHHTHHHHHHHHHHHHHTCSEEEEEEEGGGGCSCSSSSBCTTCCCCCCSHHHHHHHHHHHHHHTC
T ss_pred             ccCCCccccChh-HHHHHHHHHHHHHHHHHcCCCEEEEecCHHHhCCCccCCCCcCCCCCCCChHHHHHHHHHHHHHHc
Confidence            97542    112 7899999999999999989999999999 66765421          5678999999999999987

>2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus}

Probab=99.92  E-value=1.3e-24  Score=175.95  Aligned_cols=136  Identities=16%  Similarity=0.185  Sum_probs=114.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC--ccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~~  131 (202)
                      .++++|+||||+||||++++++|+++|++|++++|+.... .    .+++++.+|+.|++++.+++++  +|+||||||.
T Consensus        10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~-~----l~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~   84 (321)
T 2pk3_A           10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEAK-L----PNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAK   84 (321)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTCC-C----TTEEEEECCTTCHHHHHHHHHHHCCSEEEECCSC
T ss_pred             cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCccc-c----ceeeEEECCCCCHHHHHHHHHhcCCCEEEEcCcc
Confidence            4678999999999999999999999999999999986541 1    1789999999999999999986  9999999997


Q ss_pred             CC------CCccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCcC------------CcCCcchHHHHHHHHHHHH
Q 028890          132 FG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGVA------------NYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~~~------------~~~~~~Y~~sK~~~E~~~~  191 (202)
                      ..      ++...+++|+.++.+++++|++. ++++|||+|| .+|+..            ..+.+.|+.+|.++|.+++
T Consensus        85 ~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~  164 (321)
T 2pk3_A           85 SSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRILTIGSSEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLAR  164 (321)
T ss_dssp             CCHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEEGGGTBSCCGGGCSBCTTSCCBCCSHHHHHHHHHHHHHH
T ss_pred             cchhhhhhcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEccHHhcCCCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence            54      44567899999999999999776 5889999999 667643            2456789999999999998


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .+.
T Consensus       165 ~~~  167 (321)
T 2pk3_A          165 QYV  167 (321)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            874

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.92  E-value=1.3e-24  Score=177.34  Aligned_cols=140  Identities=22%  Similarity=0.316  Sum_probs=117.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc------cCCCceeEEEccCCCHhhHHHHhc--CccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALD--GVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~------~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi  126 (202)
                      ++|+|+||||+||||++++++|+++|++|++++|+.......      ....++.++.+|+.|++++.++++  ++|+||
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vi   83 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALARIFDAHPITAAI   83 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHHHHHHSCCCEEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHHHHhccCCcEEE
Confidence            567999999999999999999999999999999976543211      113578999999999999999998  899999


Q ss_pred             EccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHH
Q 028890          127 SCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       127 ~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~  189 (202)
                      ||||...      .+...+++|+.++.+++++|++.++++||++|| .+|+...          .+.+.|+.+|.++|++
T Consensus        84 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~  163 (341)
T 3enk_A           84 HFAALKAVGESVAKPIEYYRNNLDSLLSLLRVMRERAVKRIVFSSSATVYGVPERSPIDETFPLSATNPYGQTKLMAEQI  163 (341)
T ss_dssp             ECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGBCSCSSSSBCTTSCCBCSSHHHHHHHHHHHH
T ss_pred             ECccccccCccccChHHHHHHHHHHHHHHHHHHHhCCCCEEEEEecceEecCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Confidence            9999653      234678899999999999999999999999999 6676432          2347899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       164 ~~~~~  168 (341)
T 3enk_A          164 LRDVE  168 (341)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=99.92  E-value=4.8e-24  Score=161.82  Aligned_cols=135  Identities=18%  Similarity=0.182  Sum_probs=114.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~  136 (202)
                      |+|+||||+|+||++++++|+++|++|++++|++.+.. .....+++++.+|+.|++++.++++++|+||||+|.... .
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~-~   81 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP-SEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRND-L   81 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC-SSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTTC-C
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc-cccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCCCC-C
Confidence            79999999999999999999999999999999865422 122468899999999999999999999999999997543 2


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc---CCcchHHHHHHHHHHHHHh
Q 028890          137 YMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY---LLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       137 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~---~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ...++|+.++.++++++++.++++||++|| ..|+....   +...|+.+|..+|++++.+
T Consensus        82 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~Ss~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~  142 (206)
T 1hdo_A           82 SPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRES  142 (206)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHHT
T ss_pred             CccchHHHHHHHHHHHHHHhCCCeEEEEeeeeeccCcccccccchhHHHHHHHHHHHHHhC
Confidence            334689999999999999999999999999 55654332   4578999999999998764

>1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A*

Probab=99.92  E-value=4e-24  Score=174.22  Aligned_cols=138  Identities=25%  Similarity=0.288  Sum_probs=115.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC---C---CeEEEEecCCCCc----cccc-CCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDR---G---LTVASLSRSGRSS----LRDS-WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~---g---~~V~~l~r~~~~~----~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |+|+||||+||||++++++|+++   |   ++|++++|.....    .... ...+++++.+|+.|++++.+++.++|+|
T Consensus         1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   80 (337)
T 1r6d_A            1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (337)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCchhhhhhcccCCCeEEEEcCCCCHHHHHHHhcCCCEE
Confidence            58999999999999999999997   8   9999999865321    1111 1357899999999999999999999999


Q ss_pred             EEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHH
Q 028890          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSD  188 (202)
Q Consensus       126 i~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~  188 (202)
                      |||||...      ++...+++|+.++.+++++|.+.++++|||+|| .+|+..          ..+.++|+.+|.++|+
T Consensus        81 ih~A~~~~~~~~~~~~~~~~~~Nv~~~~~l~~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~  160 (337)
T 1r6d_A           81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDL  160 (337)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             EECCCccCchhhhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHhCCCCCCCCCCCCCCCCCCchHHHHHHHHH
Confidence            99999653      456678999999999999999999999999999 667642          2345789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       161 ~~~~~~  166 (337)
T 1r6d_A          161 VARAYH  166 (337)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A*

Probab=99.92  E-value=1.8e-24  Score=179.25  Aligned_cols=141  Identities=16%  Similarity=0.147  Sum_probs=116.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccC-CCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++|+|+||||+||||++++++|+++| ++|++++|+......... ..+++++.+|+.|++++.++++++|+|||+|+.
T Consensus        30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~l~~~~~v~~~~~Dl~d~~~l~~~~~~~d~Vih~A~~  109 (377)
T 2q1s_A           30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKINVPDHPAVRFSETSITDDALLASLQDEYDYVFHLATY  109 (377)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGGGSCCCTTEEEECSCTTCHHHHHHCCSCCSEEEECCCC
T ss_pred             hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchhhccCCCceEEEECCCCCHHHHHHHhhCCCEEEECCCc
Confidence            357899999999999999999999999 999999998654322221 467999999999999999999999999999997


Q ss_pred             CC------CCccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-cccCc---------------CC-cCCcchHHHHHHHH
Q 028890          132 FG------SNSYMYKINGTANINAIRAASEK-GVKRFVYISA-ADFGV---------------AN-YLLQGYYEGKVLSS  187 (202)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~~~~~---------------~~-~~~~~Y~~sK~~~E  187 (202)
                      ..      ++...+++|+.++.+++++|++. ++++|||+|| .+|+.               +. .+.++|+.+|.++|
T Consensus       110 ~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~~~~E~~~~~~~~~~~~~Y~~sK~~~E  189 (377)
T 2q1s_A          110 HGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIAEKTFDDAKATEETDIVSLHNNDSPYSMSKIFGE  189 (377)
T ss_dssp             SCHHHHHHCHHHHHHHHTHHHHHHHHHHTTCSSCCEEEEEEEC--------------CCCCCCCSSCCCSHHHHHHHHHH
T ss_pred             cCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCHHHcCCCCCCCcCcccccccccccCCCCchHHHHHHHH
Confidence            53      34567889999999999999998 8999999999 56652               11 34578999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      ++++.+.
T Consensus       190 ~~~~~~~  196 (377)
T 2q1s_A          190 FYSVYYH  196 (377)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998764

>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens}

Probab=99.92  E-value=5.2e-25  Score=174.29  Aligned_cols=135  Identities=19%  Similarity=0.109  Sum_probs=115.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC--
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~--  133 (202)
                      +|+|+||||+|+||++++++|+++|++|++++|+.....    ..+++++.+|+.|++++.++++++|+||||||...  
T Consensus         2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~~~~~   77 (267)
T 3ay3_A            2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGAA----EAHEEIVACDLADAQAVHDLVKDCDGIIHLGGVSVER   77 (267)
T ss_dssp             EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCCC----CTTEEECCCCTTCHHHHHHHHTTCSEEEECCSCCSCC
T ss_pred             CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCcccc----CCCccEEEccCCCHHHHHHHHcCCCEEEECCcCCCCC
Confidence            468999999999999999999999999999999865422    24678999999999999999999999999999753  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchHHHHHHHHHHHHHhc
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .+...+++|+.++.++++++++.++++|||+|| .+|+...           .+.+.|+.+|.++|.+++.+.
T Consensus        78 ~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~  150 (267)
T 3ay3_A           78 PWNDILQANIIGAYNLYEAARNLGKPRIVFASSNHTIGYYPRTTRIDTEVPRRPDSLYGLSKCFGEDLASLYY  150 (267)
T ss_dssp             CHHHHHHHTHHHHHHHHHHHHHTTCCEEEEEEEGGGSTTSBTTSCBCTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCHHHhCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence            345678899999999999999999999999999 5665422           145789999999999998763

>1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A*

Probab=99.92  E-value=3.7e-24  Score=175.03  Aligned_cols=138  Identities=17%  Similarity=0.222  Sum_probs=115.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCc----ccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSS----LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ||+|+||||+||||++++++|+++  |++|++++|.....    .......+++++.+|+.|++++.++++++|+|||||
T Consensus         4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A   83 (348)
T 1oc2_A            4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHYA   83 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCChhHHhhhccCCeEEEECCCCCHHHHHHHhhcCCEEEECC
Confidence            579999999999999999999998  89999999975321    111123578999999999999999999999999999


Q ss_pred             ccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------------------CcCCcchH
Q 028890          130 GGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------------------NYLLQGYY  180 (202)
Q Consensus       130 ~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------------------~~~~~~Y~  180 (202)
                      |...      ++...+++|+.++.+++++|.+.++ +|||+|| .+|+..                      ..+.+.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~-~~v~~SS~~vyg~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~Y~  162 (348)
T 1oc2_A           84 AESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPYS  162 (348)
T ss_dssp             SCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHHH
T ss_pred             cccCccchhhCHHHHHHHHHHHHHHHHHHHHHhCC-eEEEecccceeCCCcccccccccccccCCCcCCCCCCCCCCccH
Confidence            9753      4566789999999999999999887 9999999 566542                      23457899


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .+|.++|++++.+.
T Consensus       163 ~sK~~~e~~~~~~~  176 (348)
T 1oc2_A          163 STKAASDLIVKAWV  176 (348)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998864

>4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis}

Probab=99.92  E-value=2e-24  Score=176.54  Aligned_cols=142  Identities=15%  Similarity=0.194  Sum_probs=114.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcc-c----ccCCCceeEEEccCCCHhhHHHHhcC--cc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL-R----DSWANNVIWHQGNLLSSDSWKEALDG--VT  123 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~-~----~~~~~~~~~~~~D~~~~~~~~~~~~~--~d  123 (202)
                      ..++|+|+||||+||||++|+++|+++|  ++|++++|...... .    .....+++++.+|+.|++++.+++++  +|
T Consensus        21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  100 (346)
T 4egb_A           21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNLNNVKSIQDHPNYYFVKGEIQNGELLEHVIKERDVQ  100 (346)
T ss_dssp             ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHTCC
T ss_pred             ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccchhhhhhhccCCCeEEEEcCCCCHHHHHHHHhhcCCC
Confidence            3467899999999999999999999999  68888887653211 1    11235899999999999999999987  99


Q ss_pred             EeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchHHHHHH
Q 028890          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKVL  185 (202)
Q Consensus       124 ~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~  185 (202)
                      +|||+|+...      ++...+++|+.++.+++++|++.++++|||+|| .+|+...           .+.+.|+.+|.+
T Consensus       101 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~ll~a~~~~~~~~~v~~SS~~vy~~~~~~~~~~E~~~~~p~~~Y~~sK~~  180 (346)
T 4egb_A          101 VIVNFAAESHVDRSIENPIPFYDTNVIGTVTLLELVKKYPHIKLVQVSTDEVYGSLGKTGRFTEETPLAPNSPYSSSKAS  180 (346)
T ss_dssp             EEEECCCCC---------CHHHHHHTHHHHHHHHHHHHSTTSEEEEEEEGGGGCCCCSSCCBCTTSCCCCCSHHHHHHHH
T ss_pred             EEEECCcccchhhhhhCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCchHHhCCCCcCCCcCCCCCCCCCChhHHHHHH
Confidence            9999999643      345678999999999999999999999999999 6776531           235789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      +|++++.+.
T Consensus       181 ~E~~~~~~~  189 (346)
T 4egb_A          181 ADMIALAYY  189 (346)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999864

>2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens}

Probab=99.92  E-value=2.3e-24  Score=175.97  Aligned_cols=140  Identities=15%  Similarity=0.158  Sum_probs=117.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-------CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-------LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-------~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~v  125 (202)
                      .++|+|+||||+||||++++++|+++|       ++|++++|+...... ....+++++.+|+.|++++.++++ ++|+|
T Consensus        12 ~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-~~~~~~~~~~~Dl~d~~~~~~~~~~~~d~v   90 (342)
T 2hrz_A           12 FQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-GFSGAVDARAADLSAPGEAEKLVEARPDVI   90 (342)
T ss_dssp             CSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-TCCSEEEEEECCTTSTTHHHHHHHTCCSEE
T ss_pred             ccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-ccCCceeEEEcCCCCHHHHHHHHhcCCCEE
Confidence            467899999999999999999999999       899999998643221 123578999999999999999984 89999


Q ss_pred             EEccccCC-----CCccchhhhHHHHHHHHHHHHHcC-----CCEEEEEec-cccCcCCc----------CCcchHHHHH
Q 028890          126 ISCVGGFG-----SNSYMYKINGTANINAIRAASEKG-----VKRFVYISA-ADFGVANY----------LLQGYYEGKV  184 (202)
Q Consensus       126 i~~a~~~~-----~~~~~~~~n~~~~~~~~~~~~~~~-----~~~~v~~SS-~~~~~~~~----------~~~~Y~~sK~  184 (202)
                      |||||...     ++...+++|+.++.+++++|++.+     +++||++|| .+|+....          +.++|+.+|.
T Consensus        91 ih~A~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~sK~  170 (342)
T 2hrz_A           91 FHLAAIVSGEAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPDEFHTTPLTSYGTQKA  170 (342)
T ss_dssp             EECCCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGCCSSCCSSBCTTCCCCCSSHHHHHHH
T ss_pred             EECCccCcccccccHHHHHHHHHHHHHHHHHHHHhcccccCCCcEEEEeCchHhhCCCCCCCcCCCCCCCCcchHHHHHH
Confidence            99999653     345678899999999999998876     789999999 67765422          5678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      ++|++++.+.
T Consensus       171 ~~e~~~~~~~  180 (342)
T 2hrz_A          171 ICELLLSDYS  180 (342)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998874

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=99.92  E-value=1.5e-24  Score=177.06  Aligned_cols=139  Identities=19%  Similarity=0.262  Sum_probs=113.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cc-cCCCceeEEEccCCCHhhHHHHhcC--ccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RD-SWANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~-~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~  128 (202)
                      ||+|+||||+||||++++++|+++|++|++++|......    .. ....+++++.+|+.|++++.+++++  +|+||||
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHL   80 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCchhhhhhhccCCceEEEEcCCCCHHHHHHHHhccCCCEEEEC
Confidence            478999999999999999999999999999998532211    00 1124689999999999999999988  9999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcC--------------------------Cc
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVA--------------------------NY  174 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS-~~~~~~--------------------------~~  174 (202)
                      ||...      ++...+++|+.++.+++++|++.+++ +|||+|| .+|+..                          ..
T Consensus        81 A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~e~~~~~  160 (347)
T 1orr_A           81 AGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLD  160 (347)
T ss_dssp             CCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCC
T ss_pred             CcccChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccccccccccccccCccccCCCC
Confidence            99753      34567899999999999999998885 9999999 666631                          22


Q ss_pred             CCcchHHHHHHHHHHHHHhc
Q 028890          175 LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.+.|+.+|.++|++++.+.
T Consensus       161 ~~~~Y~~sK~~~E~~~~~~~  180 (347)
T 1orr_A          161 FHSPYGCSKGAADQYMLDYA  180 (347)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHH
Confidence            45689999999999998864

>2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii}

Probab=99.92  E-value=5.3e-24  Score=173.28  Aligned_cols=139  Identities=22%  Similarity=0.255  Sum_probs=115.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCC-ccc---cc-CCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRS-SLR---DS-WANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~-~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      +|+|+||||+||||++++++|+++|  ++|++++|.... ...   .. ...+++++.+|+.|++++.+++.++|+||||
T Consensus         3 ~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~   82 (336)
T 2hun_A            3 SMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLEDDPRYTFVKGDVADYELVKELVRKVDGVVHL   82 (336)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHTCSEEEEC
T ss_pred             CCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCchhHHhhhccCCceEEEEcCCCCHHHHHHHhhCCCEEEEC
Confidence            4689999999999999999999996  899999987521 111   11 1357899999999999999999999999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCC-CEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGV-KRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~-~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~  190 (202)
                      ||...      ++...+++|+.++.+++++|.+.+. ++|||+|| .+|+..          ..+.+.|+.+|.++|+++
T Consensus        83 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~  162 (336)
T 2hun_A           83 AAESHVDRSISSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSFTENDRLMPSSPYSATKAASDMLV  162 (336)
T ss_dssp             CCCCCHHHHHHCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCBCTTBCCCCCSHHHHHHHHHHHHH
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCcCCCCCCCCCCccHHHHHHHHHHH
Confidence            99753      4556789999999999999998775 69999999 567642          334578999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       163 ~~~~  166 (336)
T 2hun_A          163 LGWT  166 (336)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=99.92  E-value=5.9e-25  Score=170.96  Aligned_cols=137  Identities=20%  Similarity=0.258  Sum_probs=112.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCce-eEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNV-IWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..++|+|+||||+|+||++++++|+++|++|++++|++.+.. .....++ +++.+|++  +++.+++.++|+||||||.
T Consensus        18 ~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~-~~~~~~~~~~~~~Dl~--~~~~~~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           18 YFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGP-ELRERGASDIVVANLE--EDFSHAFASIDAVVFAAGS   94 (236)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHTTCSEEEECCTT--SCCGGGGTTCSEEEECCCC
T ss_pred             CcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHH-HHHhCCCceEEEcccH--HHHHHHHcCCCEEEECCCC
Confidence            357889999999999999999999999999999999865422 1222478 99999998  7788889999999999997


Q ss_pred             CC--CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCC---cCCcchHHHHHHHHHHHHH
Q 028890          132 FG--SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVAN---YLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       132 ~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~---~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ..  ++...+++|+.++.+++++|++.++++||++||.....+.   .+...|+.+|.++|++++.
T Consensus        95 ~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~  160 (236)
T 3e8x_A           95 GPHTGADKTILIDLWGAIKTIQEAEKRGIKRFIMVSSVGTVDPDQGPMNMRHYLVAKRLADDELKR  160 (236)
T ss_dssp             CTTSCHHHHHHTTTHHHHHHHHHHHHHTCCEEEEECCTTCSCGGGSCGGGHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccccchhhHHHHHHHHHHHHHcCCCEEEEEecCCCCCCCCChhhhhhHHHHHHHHHHHHHH
Confidence            54  4566889999999999999999999999999993222222   3567899999999999885

>3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A*

Probab=99.92  E-value=2e-24  Score=174.09  Aligned_cols=135  Identities=21%  Similarity=0.331  Sum_probs=114.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC---
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG---  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~---  133 (202)
                      |+|+||||+||||++++++|+++|++|++++|....... ....+++++.+|+.|++ +.+++++ |+|||+|+...   
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~~Dl~d~~-~~~~~~~-d~vih~A~~~~~~~   77 (312)
T 3ko8_A            1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-FVNPSAELHVRDLKDYS-WGAGIKG-DVVFHFAANPEVRL   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGG-GSCTTSEEECCCTTSTT-TTTTCCC-SEEEECCSSCSSSG
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchh-hcCCCceEEECccccHH-HHhhcCC-CEEEECCCCCCchh
Confidence            589999999999999999999999999999997654322 22568899999999999 8888888 99999999532   


Q ss_pred             ---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          134 ---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                         ++...+++|+.++.+++++|++.++++|||+|| .+|+...          .+.+.|+.+|.++|++++.+.
T Consensus        78 ~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~  152 (312)
T 3ko8_A           78 STTEPIVHFNENVVATFNVLEWARQTGVRTVVFASSSTVYGDADVIPTPEEEPYKPISVYGAAKAAGEVMCATYA  152 (312)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHhCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence               234577899999999999999999999999999 6776432          345789999999999998864

>1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A*

Probab=99.92  E-value=3.8e-24  Score=174.94  Aligned_cols=139  Identities=22%  Similarity=0.314  Sum_probs=115.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC------ccc---c---cCCCceeEEEccCCCHhhHHHHhc--C
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS------SLR---D---SWANNVIWHQGNLLSSDSWKEALD--G  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~------~~~---~---~~~~~~~~~~~D~~~~~~~~~~~~--~  121 (202)
                      +|+|+||||+||||++++++|+++|++|++++|....      ...   .   ....+++++.+|+.|++++.++++  +
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~   81 (348)
T 1ek6_A            2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (348)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCcccccccccHHHHHHHHhccCCceEEEECCCCCHHHHHHHHHhcC
Confidence            5799999999999999999999999999999986432      100   0   013578999999999999999998  8


Q ss_pred             ccEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcC-CcchHHHH
Q 028890          122 VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYL-LQGYYEGK  183 (202)
Q Consensus       122 ~d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~-~~~Y~~sK  183 (202)
                      +|+||||||...      ++...+++|+.++.+++++|++.++++|||+|| .+|+..          ..+ .++|+.+|
T Consensus        82 ~d~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~E~~~~~p~~~~Y~~sK  161 (348)
T 1ek6_A           82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK  161 (348)
T ss_dssp             EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred             CCEEEECCCCcCccchhhchHHHHHHHHHHHHHHHHHHHHhCCCEEEEECcHHHhCCCCCCCcCCCCCCCCCCCchHHHH
Confidence            999999999653      345678899999999999999999999999999 667642          123 57899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .++|++++.+.
T Consensus       162 ~~~e~~~~~~~  172 (348)
T 1ek6_A          162 FFIEEMIRDLC  172 (348)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998874

>1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A*

Probab=99.92  E-value=4.6e-24  Score=175.24  Aligned_cols=140  Identities=17%  Similarity=0.144  Sum_probs=115.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc----cCCCceeEEEccCCCHhhHHHHhcC--ccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDG--VTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~  128 (202)
                      ++|+|+||||+||||++++++|+++|++|++++|+.......    ....+++++.+|+.|++++.+++++  +|+||||
T Consensus         8 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   87 (357)
T 1rkx_A            8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFHM   87 (357)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccchhhHhhccCCceEEEEccccCHHHHHHHHHhcCCCEEEEC
Confidence            468999999999999999999999999999999976542111    0135789999999999999999886  8999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcC-CCEEEEEec-cccCcC-----------CcCCcchHHHHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKG-VKRFVYISA-ADFGVA-----------NYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS-~~~~~~-----------~~~~~~Y~~sK~~~E~~  189 (202)
                      ||...      ++...+++|+.++.+++++|.+.+ +++|||+|| .+|+..           ..+.++|+.+|.++|++
T Consensus        88 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~vyg~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~  167 (357)
T 1rkx_A           88 AAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAELV  167 (357)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHHH
T ss_pred             CCCcccccchhCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEecCHHHhCCCCcCCCCCCCCCCCCCCccHHHHHHHHHH
Confidence            99532      345678899999999999999876 889999999 666632           22456899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       168 ~~~~~  172 (357)
T 1rkx_A          168 TSSYR  172 (357)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.91  E-value=3.5e-24  Score=174.29  Aligned_cols=141  Identities=18%  Similarity=0.189  Sum_probs=114.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----ccc-CCCceeEEEccCCCHhhHHHHhcC--ccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDS-WANNVIWHQGNLLSSDSWKEALDG--VTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~-~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi  126 (202)
                      ..+++|+||||+||||++++++|+++|++|++++|+.....    ... ...+++++.+|+.|++++.+++++  +|+||
T Consensus        12 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~Vi   91 (335)
T 1rpn_A           12 SMTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVY   91 (335)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             ccCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccccchhhccccCceEEEECCCCCHHHHHHHHHHcCCCEEE
Confidence            46789999999999999999999999999999999865421    111 134789999999999999999885  69999


Q ss_pred             EccccCC------CCccchhhhHHHHHHHHHHHHHcCC-CEEEEEec-cccCcCC----------cCCcchHHHHHHHHH
Q 028890          127 SCVGGFG------SNSYMYKINGTANINAIRAASEKGV-KRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSD  188 (202)
Q Consensus       127 ~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~-~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~  188 (202)
                      ||||...      ++...+++|+.++.+++++|++.++ ++|||+|| .+|+...          .+.+.|+.+|.++|.
T Consensus        92 h~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~  171 (335)
T 1rpn_A           92 NLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHW  171 (335)
T ss_dssp             ECCSCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             ECccccchhhhhhChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCHHHhCCCCCCCCCcccCCCCCChhHHHHHHHHH
Confidence            9999643      3456788999999999999999886 89999999 6676432          235689999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       172 ~~~~~~  177 (335)
T 1rpn_A          172 ITVNYR  177 (335)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=99.91  E-value=3.7e-24  Score=174.46  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=115.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----cc-CCCceeEEEccCCCHhhHHHHhcC--ccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DS-WANNVIWHQGNLLSSDSWKEALDG--VTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~-~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~  127 (202)
                      ++|+|+||||+||||++++++|+++|++|++++|+......    .. ...+++++.+|+.|++++.+++++  +|+|||
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   81 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN   81 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            35799999999999999999999999999999998654211    11 124789999999999999999885  699999


Q ss_pred             ccccCC------CCccchhhhHHHHHHHHHHHHHcCC-CEEEEEec-cccCcC----------CcCCcchHHHHHHHHHH
Q 028890          128 CVGGFG------SNSYMYKINGTANINAIRAASEKGV-KRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       128 ~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~-~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~  189 (202)
                      |||...      ++...+++|+.++.+++++|.+.++ ++||++|| .+||..          ..+.++|+.+|.++|.+
T Consensus        82 ~A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~  161 (345)
T 2z1m_A           82 LAAQSFVGVSFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTEKTPFYPRSPYAVAKLFGHWI  161 (345)
T ss_dssp             CCCCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             CCCCcchhhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCccCCCCCCChhHHHHHHHHHH
Confidence            999643      3456789999999999999998886 89999999 667632          23457899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       162 ~~~~~  166 (345)
T 2z1m_A          162 TVNYR  166 (345)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A*

Probab=99.91  E-value=6.9e-24  Score=176.37  Aligned_cols=139  Identities=19%  Similarity=0.262  Sum_probs=115.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHH-HCCCeEEEEecCCCCc--------cccc-------C----CCc---eeEEEccCCCH
Q 028890           56 SEKLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSS--------LRDS-------W----ANN---VIWHQGNLLSS  112 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll-~~g~~V~~l~r~~~~~--------~~~~-------~----~~~---~~~~~~D~~~~  112 (202)
                      +|+|+||||+||||++++++|+ ++|++|++++|.....        ....       .    ..+   ++++.+|+.|+
T Consensus         2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~   81 (397)
T 1gy8_A            2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (397)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccccccchHHHHHHHHHHhhccccccCCceEEEEECCCCCH
Confidence            4699999999999999999999 9999999999875432        1110       0    124   89999999999


Q ss_pred             hhHHHHhc--C-ccEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------
Q 028890          113 DSWKEALD--G-VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------  173 (202)
Q Consensus       113 ~~~~~~~~--~-~d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------  173 (202)
                      +++.++++  + +|+||||||...      ++...+++|+.++.+++++|++.++++|||+|| .+|+...         
T Consensus        82 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~  161 (397)
T 1gy8_A           82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE  161 (397)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred             HHHHHHHHhcCCCCEEEECCCccCcCcchhhHHHHHHHHhHHHHHHHHHHHHhCCCEEEEECCHHHhCCCCccccccccc
Confidence            99999987  6 999999999753      345678999999999999999999999999999 6676443         


Q ss_pred             --------cCCcchHHHHHHHHHHHHHhc
Q 028890          174 --------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 --------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                              .+.+.|+.+|.++|.+++.+.
T Consensus       162 ~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~  190 (397)
T 1gy8_A          162 PIDINAKKSPESPYGESKLIAERMIRDCA  190 (397)
T ss_dssp             CBCTTSCCBCSSHHHHHHHHHHHHHHHHH
T ss_pred             CcCccCCCCCCCchHHHHHHHHHHHHHHH
Confidence                    235789999999999998864

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=99.91  E-value=2.8e-24  Score=167.46  Aligned_cols=136  Identities=18%  Similarity=0.201  Sum_probs=115.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ++|+++||||+|+||++++++|+++|+  +|++++|++..... ....++.++.+|+.|++++.++++++|+||||||..
T Consensus        17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~-~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-EAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-GGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc-cccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            457999999999999999999999999  99999998754321 112478899999999999999999999999999964


Q ss_pred             C---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 G---SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .   .+...+++|+.++.++++++++.++++||++|| ..++   .+..+|+.+|+.+|.+++.+.
T Consensus        96 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~iv~~SS~~~~~---~~~~~Y~~sK~~~e~~~~~~~  158 (242)
T 2bka_A           96 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSKGADK---SSNFLYLQVKGEVEAKVEELK  158 (242)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT---TCSSHHHHHHHHHHHHHHTTC
T ss_pred             cccCCcccceeeeHHHHHHHHHHHHHCCCCEEEEEccCcCCC---CCcchHHHHHHHHHHHHHhcC
Confidence            3   234577899999999999999999899999999 4554   345689999999999998753

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=99.91  E-value=4.2e-24  Score=175.33  Aligned_cols=138  Identities=19%  Similarity=0.216  Sum_probs=116.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CC-eEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GL-TVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~-~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      .++|+|+||||+|+||++++++|+++ |+ +|++++|++.+...   .....++.++.+|++|++++.++++++|+|||+
T Consensus        19 ~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~D~Vih~   98 (344)
T 2gn4_A           19 LDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNYALEGVDICIHA   98 (344)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHHHTTTCSEEEEC
T ss_pred             hCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhcCCEEEEC
Confidence            46789999999999999999999999 97 99999997543211   111358999999999999999999999999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ||...      .+...+++|+.|+.+++++|.+.++++||++||.   ....+.++|+.+|.++|.+++.+.
T Consensus        99 Aa~~~~~~~~~~~~~~~~~Nv~gt~~l~~aa~~~~v~~~V~~SS~---~~~~p~~~Y~~sK~~~E~~~~~~~  167 (344)
T 2gn4_A           99 AALKHVPIAEYNPLECIKTNIMGASNVINACLKNAISQVIALSTD---KAANPINLYGATKLCSDKLFVSAN  167 (344)
T ss_dssp             CCCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCG---GGSSCCSHHHHHHHHHHHHHHHGG
T ss_pred             CCCCCCCchhcCHHHHHHHHHHHHHHHHHHHHhCCCCEEEEecCC---ccCCCccHHHHHHHHHHHHHHHHH
Confidence            99653      2356789999999999999999999999999993   223346789999999999999875

>3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0

Probab=99.91  E-value=4.9e-24  Score=172.10  Aligned_cols=136  Identities=20%  Similarity=0.302  Sum_probs=110.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC--
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~--  133 (202)
                      ||+|+||||+||||++++++|+++| +++++++...... .....+++++.+|+.| +++.++++++|+|||+|+...  
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~-~~~~~~~~~~~~Dl~~-~~~~~~~~~~d~vih~a~~~~~~   77 (313)
T 3ehe_A            1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNE-EFVNEAARLVKADLAA-DDIKDYLKGAEEVWHIAANPDVR   77 (313)
T ss_dssp             --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCG-GGSCTTEEEECCCTTT-SCCHHHHTTCSEEEECCCCCCCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCCh-hhcCCCcEEEECcCCh-HHHHHHhcCCCEEEECCCCCChh
Confidence            5789999999999999999999999 5555555443322 2224679999999999 889999999999999999532  


Q ss_pred             ----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHHHhc
Q 028890          134 ----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                          ++...+++|+.++.+++++|++.++++|||+|| .+|+..          ..+.+.|+.+|.++|.+++.+.
T Consensus        78 ~~~~~~~~~~~~nv~~~~~l~~~~~~~~~~~iv~~SS~~vyg~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~  153 (313)
T 3ehe_A           78 IGAENPDEIYRNNVLATYRLLEAMRKAGVSRIVFTSTSTVYGEAKVIPTPEDYPTHPISLYGASKLACEALIESYC  153 (313)
T ss_dssp             -CCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEECCGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeCchHHhCcCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence                345678999999999999999999999999999 677632          2345789999999999998864

>2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris}

Probab=99.91  E-value=1.8e-24  Score=174.26  Aligned_cols=136  Identities=15%  Similarity=0.176  Sum_probs=115.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~  131 (202)
                      +|+|+||||+||||++++++|+++  |++|++++|+.....   ...+++++.+|+.|++++.++++  ++|+|||+|+.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~---~~~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~   78 (312)
T 2yy7_A            2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNTD---VVNSGPFEVVNALDFNQIEHLVEVHKITDIYLMAAL   78 (312)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSCH---HHHSSCEEECCTTCHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCcccc---ccCCCceEEecCCCHHHHHHHHhhcCCCEEEECCcc
Confidence            478999999999999999999999  899999999865421   11367899999999999999998  89999999996


Q ss_pred             CC-----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchHHHHHHHHHHHHHhc
Q 028890          132 FG-----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       132 ~~-----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..     ++...+++|+.++.+++++|++.++++|||+|| .+|+...           .+.++|+.+|.++|++++.+.
T Consensus        79 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~~~  158 (312)
T 2yy7_A           79 LSATAEKNPAFAWDLNMNSLFHVLNLAKAKKIKKIFWPSSIAVFGPTTPKENTPQYTIMEPSTVYGISKQAGERWCEYYH  158 (312)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHTTSCSEEECCEEGGGCCTTSCSSSBCSSCBCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhChHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccHHHhCCCCCCCCccccCcCCCCchhHHHHHHHHHHHHHHH
Confidence            43     345678899999999999999999999999999 6676422           245789999999999998764

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=99.91  E-value=1.2e-24  Score=177.11  Aligned_cols=141  Identities=24%  Similarity=0.296  Sum_probs=114.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--c----cCCCceeEE-EccCCCHhhHHHHhcCccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D----SWANNVIWH-QGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~----~~~~~~~~~-~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      .++|+|+||||+||||++++++|+++|++|++++|+......  .    ....+++++ .+|+.|++++.++++++|+||
T Consensus         9 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi   88 (342)
T 1y1p_A            9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEE
Confidence            467899999999999999999999999999999997543110  0    012578888 899999999999999999999


Q ss_pred             EccccCC---CCccchhhhHHHHHHHHHHHHH-cCCCEEEEEec-cccCcCC----------------------------
Q 028890          127 SCVGGFG---SNSYMYKINGTANINAIRAASE-KGVKRFVYISA-ADFGVAN----------------------------  173 (202)
Q Consensus       127 ~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~-~~~~~~v~~SS-~~~~~~~----------------------------  173 (202)
                      |||+...   ++...+++|+.++.+++++|.+ .++++|||+|| .+|+.+.                            
T Consensus        89 h~A~~~~~~~~~~~~~~~n~~g~~~ll~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~  168 (342)
T 1y1p_A           89 HIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESD  168 (342)
T ss_dssp             ECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTS
T ss_pred             EeCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEeccHHHhcCCCCCCCCcccCccccCchhhhhhccccccc
Confidence            9999754   3456788999999999999984 67899999999 5664221                            


Q ss_pred             --cCCcchHHHHHHHHHHHHHhc
Q 028890          174 --YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 --~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                        .+.+.|+.+|.++|++++.+.
T Consensus       169 ~~~~~~~Y~~sK~~~e~~~~~~~  191 (342)
T 1y1p_A          169 PQKSLWVYAASKTEAELAAWKFM  191 (342)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHHHHH
Confidence              123679999999999998874

>2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A

Probab=99.91  E-value=9.6e-24  Score=172.10  Aligned_cols=137  Identities=20%  Similarity=0.233  Sum_probs=112.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCC-HhhHHHHhcCccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEALDGVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~d~vi~~a~~~~-  133 (202)
                      |+|+||||+||||++++++|+++ |++|++++|+...........+++++.+|+.| .+.+.++++++|+||||||... 
T Consensus         1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~d~vih~A~~~~~   80 (345)
T 2bll_A            1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATP   80 (345)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHHHhhcCCCeEEEeccccCcHHHHHhhccCCCEEEEcccccCc
Confidence            58999999999999999999998 89999999986543222234589999999998 4568888899999999999643 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchHHHHHHHHHHH
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------------~~~~~Y~~sK~~~E~~~  190 (202)
                           ++...+++|+.++.+++++|++.+ ++|||+|| .+|+...                 .+.+.|+.+|.++|+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~-~~~v~~SS~~v~g~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~e~~~  159 (345)
T 2bll_A           81 IEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVI  159 (345)
T ss_dssp             HHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             cchhcCHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecHHHcCCCCCCCcCCcccccccCcccCcccccHHHHHHHHHHH
Confidence                 334577899999999999999988 89999999 6665422                 12237999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       160 ~~~~  163 (345)
T 2bll_A          160 WAYG  163 (345)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A*

Probab=99.91  E-value=7.1e-24  Score=172.82  Aligned_cols=140  Identities=22%  Similarity=0.298  Sum_probs=110.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--c---ccC--CCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--R---DSW--ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~---~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ++++|+||||+||||++++++|+++|++|++++|+.....  .   ...  ..+++++.+|+.|++++.++++++|+|||
T Consensus         4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih   83 (337)
T 2c29_D            4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKADLADEGSFDEAIKGCTGVFH   83 (337)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCHHHHHHHHTSTTHHHHEEEEECCTTSTTTTHHHHTTCSEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchhHHHHHHHhcccCCCeEEEEEcCCCCHHHHHHHHcCCCEEEE
Confidence            4689999999999999999999999999999999765310  0   011  12588999999999999999999999999


Q ss_pred             ccccCCCC-----ccchhhhHHHHHHHHHHHHHcC-CCEEEEEec-c-ccCcCC--------------------cCCcch
Q 028890          128 CVGGFGSN-----SYMYKINGTANINAIRAASEKG-VKRFVYISA-A-DFGVAN--------------------YLLQGY  179 (202)
Q Consensus       128 ~a~~~~~~-----~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS-~-~~~~~~--------------------~~~~~Y  179 (202)
                      +|+.....     ...+++|+.++.+++++|.+.+ +++|||+|| . .|+...                    .+..+|
T Consensus        84 ~A~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~riV~~SS~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~Y  163 (337)
T 2c29_D           84 VATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRLVFTSSAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMY  163 (337)
T ss_dssp             CCCCCCSSCSSHHHHTHHHHHHHHHHHHHHHHHHSCCCEEEEECCGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHH
T ss_pred             eccccCCCCCChHHHHHHHHHHHHHHHHHHHHhCCCccEEEEeeeHhhcccCCCCCcccCcccCCchhhhcccCCccchH
Confidence            99865321     1367899999999999999887 899999999 3 343211                    123469


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.++|.+++.|.
T Consensus       164 ~~sK~~~E~~~~~~~  178 (337)
T 2c29_D          164 FVSKTLAEQAAWKYA  178 (337)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A*

Probab=99.91  E-value=1e-23  Score=170.04  Aligned_cols=137  Identities=23%  Similarity=0.332  Sum_probs=113.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~-  133 (202)
                      |+|+||||+||||++++++|+++|++|++++|....... ....+++++.+|+.|++++.++++  ++|+|||+|+... 
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-~~~~~~~~~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~   79 (311)
T 2p5y_A            1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE-NVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASV   79 (311)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG-GSCTTCCEECCCTTCHHHHHHHHHHHCCSEEEECCSCCCH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh-hcccCeEEEECCCCCHHHHHHHHHhcCCCEEEECccccCc
Confidence            589999999999999999999999999999985433221 122578899999999999999988  8999999998643 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEecc--ccCc-C----------CcCCcchHHHHHHHHHHHHHhc
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISAA--DFGV-A----------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~--~~~~-~----------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           ++...+++|+.++.+++++|++.++++||++||.  +|+. .          ..+.++|+.+|.++|++++.+.
T Consensus        80 ~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~iv~~SS~~~~~g~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~  158 (311)
T 2p5y_A           80 KVSVEDPVLDFEVNLLGGLNLLEACRQYGVEKLVFASTGGAIYGEVPEGERAEETWPPRPKSPYAASKAAFEHYLSVYG  158 (311)
T ss_dssp             HHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEHHHHHCCCCTTCCBCTTSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhCHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCChhhcCCCCCCCCcCCCCCCCCCChHHHHHHHHHHHHHHHH
Confidence                 3456788999999999999999999999999994  4553 1          1245689999999999998764

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=99.91  E-value=2.8e-24  Score=171.53  Aligned_cols=132  Identities=15%  Similarity=0.163  Sum_probs=110.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC-ccEeEEccccCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG-VTAVISCVGGFG  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-~d~vi~~a~~~~  133 (202)
                      ++|+|+||| +||||++++++|+++|++|++++|+....     ..+++++.+|+.|++++.+++++ +|+|||+|+...
T Consensus         2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~~~~   75 (286)
T 3gpi_A            2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQPM-----PAGVQTLIADVTRPDTLASIVHLRPEILVYCVAASE   75 (286)
T ss_dssp             CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSCC-----CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHHHHH
T ss_pred             CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCcccc-----ccCCceEEccCCChHHHHHhhcCCCCEEEEeCCCCC
Confidence            357999999 59999999999999999999999986542     36899999999999999999987 999999998643


Q ss_pred             -CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHh
Q 028890          134 -SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       134 -~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (202)
                       ++...+++|+.++.+++++|++.++++|||+|| .+|+...          .+.+.|+.+|.++|++ +.+
T Consensus        76 ~~~~~~~~~n~~~~~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~-~~~  146 (286)
T 3gpi_A           76 YSDEHYRLSYVEGLRNTLSALEGAPLQHVFFVSSTGVYGQEVEEWLDEDTPPIAKDFSGKRMLEAEAL-LAA  146 (286)
T ss_dssp             HC-----CCSHHHHHHHHHHTTTSCCCEEEEEEEGGGCCCCCSSEECTTSCCCCCSHHHHHHHHHHHH-GGG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEcccEEEcCCCCCCCCCCCCCCCCChhhHHHHHHHHH-Hhc
Confidence             456678899999999999999999999999999 6776432          2457899999999999 665

>1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A*

Probab=99.91  E-value=2.3e-23  Score=171.13  Aligned_cols=138  Identities=20%  Similarity=0.254  Sum_probs=114.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCC-ccc---cc-CCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRS-SLR---DS-WANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~-~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      |+|+||||+||||++++++|+++ |++|++++|.... ...   .. ...+++++.+|+.|++++.++++  ++|+||||
T Consensus         1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih~   80 (361)
T 1kew_A            1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCchhhhhhhhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEC
Confidence            47999999999999999999998 7999999987521 111   11 13478999999999999999998  89999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHc--CCC-------EEEEEec-cccCcC--------------------
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEK--GVK-------RFVYISA-ADFGVA--------------------  172 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~--~~~-------~~v~~SS-~~~~~~--------------------  172 (202)
                      ||...      ++...+++|+.++.+++++|.+.  +++       +|||+|| .+|+..                    
T Consensus        81 A~~~~~~~~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~~~~~~~~~~~~~~~~~E~~~  160 (361)
T 1kew_A           81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA  160 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred             CCCcChhhhhhCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCCcccccccccccCCCCCCCCC
Confidence            99753      45668899999999999999988  877       9999999 566642                    


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..+.+.|+.+|.++|.+++.+.
T Consensus       161 ~~~~~~Y~~sK~~~e~~~~~~~  182 (361)
T 1kew_A          161 YAPSSPYSASKASSDHLVRAWR  182 (361)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCccHHHHHHHHHHHHHHH
Confidence            2345789999999999998864

>1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A*

Probab=99.91  E-value=7.6e-24  Score=175.45  Aligned_cols=138  Identities=16%  Similarity=0.171  Sum_probs=113.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc----ccccC------CC-ceeEEEccCCCHhhHHHHhcC--cc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDSW------AN-NVIWHQGNLLSSDSWKEALDG--VT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~----~~~~~------~~-~~~~~~~D~~~~~~~~~~~~~--~d  123 (202)
                      ++|+||||+||||++++++|+++|++|++++|+....    .....      .. +++++.+|+.|++++.+++++  +|
T Consensus        29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d  108 (381)
T 1n7h_A           29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKPD  108 (381)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccchhhhhhhhccccccccceEEEECCCCCHHHHHHHHHhcCCC
Confidence            7999999999999999999999999999999986541    11110      12 788999999999999999885  69


Q ss_pred             EeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCC-----EEEEEec-cccCcC---------CcCCcchHHH
Q 028890          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK-----RFVYISA-ADFGVA---------NYLLQGYYEG  182 (202)
Q Consensus       124 ~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-----~~v~~SS-~~~~~~---------~~~~~~Y~~s  182 (202)
                      +||||||...      ++...+++|+.++.+++++|.+.+++     +|||+|| .+|+..         ..+.+.|+.+
T Consensus       109 ~Vih~A~~~~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~~E~~~~~~~~~Y~~s  188 (381)
T 1n7h_A          109 EVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAAS  188 (381)
T ss_dssp             EEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHHHH
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCCCCCCCCCCCCchHHH
Confidence            9999999754      34567889999999999999887654     9999999 667642         3456789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.++|.+++.+.
T Consensus       189 K~~~E~~~~~~~  200 (381)
T 1n7h_A          189 KCAAHWYTVNYR  200 (381)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.91  E-value=2e-23  Score=172.54  Aligned_cols=139  Identities=19%  Similarity=0.237  Sum_probs=114.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc----cccc-------CCCceeEEEccCCCHhhHHHHhcC--c
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDS-------WANNVIWHQGNLLSSDSWKEALDG--V  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~----~~~~-------~~~~~~~~~~D~~~~~~~~~~~~~--~  122 (202)
                      +|+|+||||+||||++++++|+++|++|++++|+....    ....       ...+++++.+|+.|++++.+++++  +
T Consensus        24 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~  103 (375)
T 1t2a_A           24 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP  103 (375)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccchhhHHHHhhhhccccCCCceEEEccCCCHHHHHHHHHhcCC
Confidence            37899999999999999999999999999999986431    1111       234788999999999999999885  6


Q ss_pred             cEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCC---CEEEEEec-cccCcC----------CcCCcchHHH
Q 028890          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGV---KRFVYISA-ADFGVA----------NYLLQGYYEG  182 (202)
Q Consensus       123 d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~---~~~v~~SS-~~~~~~----------~~~~~~Y~~s  182 (202)
                      |+||||||...      ++...+++|+.++.+++++|.+.++   ++|||+|| .+|+..          ..+.+.|+.+
T Consensus       104 d~vih~A~~~~~~~~~~~~~~~~~~N~~g~~~l~~a~~~~~~~~~~~iv~~SS~~~~~~~~~~~~~E~~~~~~~~~Y~~s  183 (375)
T 1t2a_A          104 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA  183 (375)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred             CEEEECCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhhCCCCCCCCCccCCCCCCChhHHH
Confidence            99999999753      3455788999999999999999887   79999999 667642          2345789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.++|.+++.+.
T Consensus       184 K~~~e~~~~~~~  195 (375)
T 1t2a_A          184 KLYAYWIVVNFR  195 (375)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998764

>3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A*

Probab=99.91  E-value=1.3e-23  Score=169.75  Aligned_cols=131  Identities=18%  Similarity=0.247  Sum_probs=112.0

Q ss_pred             eEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC
Q 028890           58 KLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~  133 (202)
                      +|+||||+||||++++++|+++  |++|++++|+....      .+++++.+|+.|++++.++++  ++|+|||+|+...
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~------~~~~~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~   74 (317)
T 3ajr_A            1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT------GGIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILS   74 (317)
T ss_dssp             CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC------TTCCEEECCTTCHHHHHHHHHHTTCCEEEECCCCCH
T ss_pred             CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc------cCceEEEecCCCHHHHHHHHhhcCCcEEEECCcccC
Confidence            5899999999999999999998  89999999875432      157889999999999999998  8999999999643


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchHHHHHHHHHHHHHhc
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           ++...+++|+.++.+++++|++.++++|||+|| .+|+...           .+.+.|+.+|.++|.+++.+.
T Consensus        75 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~  152 (317)
T 3ajr_A           75 AKGEKDPALAYKVNMNGTYNILEAAKQHRVEKVVIPSTIGVFGPETPKNKVPSITITRPRTMFGVTKIAAELLGQYYY  152 (317)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCTTSCSSSBCSSSCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CccccChHHHhhhhhHHHHHHHHHHHHcCCCEEEEecCHHHhCCCCCCCCccccccCCCCchHHHHHHHHHHHHHHHH
Confidence                 345678899999999999999999999999999 6676431           246789999999999988763

>1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A*

Probab=99.90  E-value=2.5e-23  Score=169.51  Aligned_cols=138  Identities=22%  Similarity=0.328  Sum_probs=111.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc------cCCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~------~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      |+|+||||+||||++++++|+++|++|++++|........      ....++.++.+|+.|++++.++++  ++|+||||
T Consensus         1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~D~vih~   80 (338)
T 1udb_A            1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcchhHHHHHHhhcCCcceEEEccCCCHHHHHHHhhccCCCEEEEC
Confidence            4899999999999999999999999999998753221110      012467899999999999998887  59999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------C-cCCcchHHHHHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------N-YLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~-~~~~~Y~~sK~~~E~~~  190 (202)
                      ||...      .+...+++|+.++.+++++|++.++++||++|| .+|+..          . ++.++|+.+|.++|+++
T Consensus        81 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~g~~~~~~~~e~~~~~~~~~~Y~~sK~~~e~~~  160 (338)
T 1udb_A           81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDNPKIPYVESFPTGTPQSPYGKSKLMVEQIL  160 (338)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHHH
T ss_pred             CccCccccchhcHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccHHHhCCCCCCCcCcccCCCCCCChHHHHHHHHHHHH
Confidence            99643      234568899999999999999989999999999 666532          1 12578999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       161 ~~~~  164 (338)
T 1udb_A          161 TDLQ  164 (338)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa}

Probab=99.90  E-value=1.4e-23  Score=169.74  Aligned_cols=139  Identities=20%  Similarity=0.331  Sum_probs=107.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEec-CCCC--ccc---ccC--CCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRS--SLR---DSW--ANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r-~~~~--~~~---~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      +|+|+||||+||||++++++|+++|++|++++| ++..  ...   ...  ..+++++.+|+.|++++.++++++|+|||
T Consensus         1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih   80 (322)
T 2p4h_X            1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFH   80 (322)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CCCHHHHTSTTHHHHEEECCCCTTCGGGGHHHHTTCSEEEE
T ss_pred             CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhHHHHHHhhhccCCceEEEecCCCCHHHHHHHHcCCCEEEE
Confidence            478999999999999999999999999999998 5422  110   010  12578899999999999999999999999


Q ss_pred             ccccCC----C-CccchhhhHHHHHHHHHHHHHc-CCCEEEEEec-c-ccCcCCc-------------------CCc-ch
Q 028890          128 CVGGFG----S-NSYMYKINGTANINAIRAASEK-GVKRFVYISA-A-DFGVANY-------------------LLQ-GY  179 (202)
Q Consensus       128 ~a~~~~----~-~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS-~-~~~~~~~-------------------~~~-~Y  179 (202)
                      +|+...    + ....+++|+.++.+++++|.+. ++++|||+|| . .++.+..                   +.. +|
T Consensus        81 ~A~~~~~~~~~~~~~~~~~nv~gt~~l~~aa~~~~~~~~iV~~SS~~~~~~~~~~~~~~~e~~~~~~~~~~~~~p~~~~Y  160 (322)
T 2p4h_X           81 TASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDKDVLDESDWSDVDLLRSVKPFGWNY  160 (322)
T ss_dssp             CCCCC--------CHHHHHHHHHHHHHHHHHTTCSSCCEEEEEEEGGGTSCSSSCCSEECTTCCCCHHHHHHHCCTTHHH
T ss_pred             cCCcccCCCCChHHHHHHHHHHHHHHHHHHHHhcCCccEEEEeccHHHcccCCCCCeecCCccccchhhhcccCcccccH
Confidence            998642    1 2337889999999999999987 7899999999 3 2332110                   111 69


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.++|.+++.|.
T Consensus       161 ~~sK~~~e~~~~~~~  175 (322)
T 2p4h_X          161 AVSKTLAEKAVLEFG  175 (322)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A*

Probab=99.90  E-value=9.3e-24  Score=175.87  Aligned_cols=141  Identities=16%  Similarity=0.203  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-------------------c---ccCCCceeEEEccCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-------------------R---DSWANNVIWHQGNLLS  111 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-------------------~---~~~~~~~~~~~~D~~~  111 (202)
                      ..+++|+||||+||||++++++|+++|++|++++|......                   .   .....+++++.+|+.|
T Consensus         9 ~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~d   88 (404)
T 1i24_A            9 HHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICD   88 (404)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTS
T ss_pred             cCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCCC
Confidence            46889999999999999999999999999999988532100                   0   0113578999999999


Q ss_pred             HhhHHHHhcC--ccEeEEccccCCC------C---ccchhhhHHHHHHHHHHHHHcCC-CEEEEEec-cccCcC------
Q 028890          112 SDSWKEALDG--VTAVISCVGGFGS------N---SYMYKINGTANINAIRAASEKGV-KRFVYISA-ADFGVA------  172 (202)
Q Consensus       112 ~~~~~~~~~~--~d~vi~~a~~~~~------~---~~~~~~n~~~~~~~~~~~~~~~~-~~~v~~SS-~~~~~~------  172 (202)
                      ++++.+++++  +|+||||||....      +   ...+++|+.++.+++++|++.++ ++||++|| .+|+..      
T Consensus        89 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~E  168 (404)
T 1i24_A           89 FEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEE  168 (404)
T ss_dssp             HHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCS
T ss_pred             HHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCCCCCCc
Confidence            9999999987  9999999996531      1   12668999999999999999887 59999999 667632      


Q ss_pred             -----------------CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 -----------------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 -----------------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                                       ..+.++|+.+|.++|++++.+.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~  207 (404)
T 1i24_A          169 GYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTC  207 (404)
T ss_dssp             SEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCCCChhHHHHHHHHHHHHHHH
Confidence                             2345689999999999988763

>1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2

Probab=99.90  E-value=2.9e-23  Score=171.11  Aligned_cols=139  Identities=19%  Similarity=0.234  Sum_probs=110.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc----cccc------CCCceeEEEccCCCHhhHHHHhcC--cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDS------WANNVIWHQGNLLSSDSWKEALDG--VT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~----~~~~------~~~~~~~~~~D~~~~~~~~~~~~~--~d  123 (202)
                      ||+|+||||+||||++++++|+++|++|++++|+....    ....      ...+++++.+|+.|++++.+++++  +|
T Consensus         1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (372)
T 1db3_A            1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (372)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccchHHHHHHhhccccCCCceEEEECCCCCHHHHHHHHHhcCCC
Confidence            57999999999999999999999999999999976431    1111      125788999999999999998885  79


Q ss_pred             EeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCC---CEEEEEec-cccCcCC----------cCCcchHHHH
Q 028890          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGV---KRFVYISA-ADFGVAN----------YLLQGYYEGK  183 (202)
Q Consensus       124 ~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~---~~~v~~SS-~~~~~~~----------~~~~~Y~~sK  183 (202)
                      +||||||...      ++...+++|+.++.++++++.+.++   ++||++|| .+|+...          .+.+.|+.+|
T Consensus        81 ~vih~A~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~iv~~SS~~v~g~~~~~~~~E~~~~~~~~~Y~~sK  160 (372)
T 1db3_A           81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK  160 (372)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred             EEEECCcccCccccccCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChhhhCCCCCCCCCccCCCCCCChHHHHH
Confidence            9999999643      2234668999999999999999887   79999999 6676422          3457899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .++|.+++.+.
T Consensus       161 ~~~e~~~~~~~  171 (372)
T 1db3_A          161 LYAYWITVNYR  171 (372)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2

Probab=99.90  E-value=2.3e-23  Score=166.54  Aligned_cols=123  Identities=20%  Similarity=0.245  Sum_probs=106.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~  132 (202)
                      ..++|+||||+||||++++++|+++|++|++++|+                .+|+.|++++.++++  ++|+||||||..
T Consensus        11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------~~Dl~d~~~~~~~~~~~~~d~vih~A~~~   74 (292)
T 1vl0_A           11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ----------------DLDITNVLAVNKFFNEKKPNVVINCAAHT   74 (292)
T ss_dssp             -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT----------------TCCTTCHHHHHHHHHHHCCSEEEECCCCC
T ss_pred             ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc----------------cCCCCCHHHHHHHHHhcCCCEEEECCccC
Confidence            56799999999999999999999999999999986                279999999999998  799999999965


Q ss_pred             C------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          133 G------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .      ++...+++|+.++.+++++|++.++ +|||+|| .+|+...          .+.+.|+.+|.++|++++.+.
T Consensus        75 ~~~~~~~~~~~~~~~nv~~~~~l~~a~~~~~~-~iv~~SS~~v~~~~~~~~~~E~~~~~~~~~Y~~sK~~~E~~~~~~~  152 (292)
T 1vl0_A           75 AVDKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALN  152 (292)
T ss_dssp             CHHHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred             CHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEechHHeECCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhC
Confidence            3      3456789999999999999999887 9999999 6676432          245789999999999999874

>2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A

Probab=99.90  E-value=1.4e-23  Score=169.42  Aligned_cols=129  Identities=19%  Similarity=0.245  Sum_probs=87.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC--ccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~~~~  133 (202)
                      +|+|+||||+|+||++++++|+++|++|++++|+...       ++  ++.+|+.|++++.+++++  +|+||||||...
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-------~~--~~~~Dl~d~~~~~~~~~~~~~d~vih~A~~~~   72 (315)
T 2ydy_A            2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-------PK--FEQVNLLDSNAVHHIIHDFQPHVIVHCAAERR   72 (315)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC---------------------------CHHHHHHHCCSEEEECC----
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-------CC--eEEecCCCHHHHHHHHHhhCCCEEEECCcccC
Confidence            5799999999999999999999999999999987543       12  788999999999988875  899999999643


Q ss_pred             ------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC---------CcCCcchHHHHHHHHHHHHHhc
Q 028890          134 ------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA---------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~---------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                            ++...+++|+.++.+++++|.+.++ +|||+|| .+|+..         ..+.+.|+.+|.++|++++.+.
T Consensus        73 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~~~~~~~~~E~~~~~~~~~Y~~sK~~~e~~~~~~~  148 (315)
T 2ydy_A           73 PDVVENQPDAASQLNVDASGNLAKEAAAVGA-FLIYISSDYVFDGTNPPYREEDIPAPLNLYGKTKLDGEKAVLENN  148 (315)
T ss_dssp             ---------------CHHHHHHHHHHHHHTC-EEEEEEEGGGSCSSSCSBCTTSCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchHHHcCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhC
Confidence                  3456789999999999999999886 9999999 666641         2346789999999999999863

>2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A

Probab=99.90  E-value=5.5e-24  Score=173.46  Aligned_cols=140  Identities=21%  Similarity=0.231  Sum_probs=108.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----c-cCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----D-SWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      ++|+|+||||+||||++++++|+++|++|++++|+......     . ....+++++.+|+.|++++.++++++|+|||+
T Consensus         8 ~~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~   87 (338)
T 2rh8_A            8 GKKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGDLKIFRADLTDELSFEAPIAGCDFVFHV   87 (338)
T ss_dssp             -CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTTTHHHHHHGGGSCEEEEECCTTTSSSSHHHHTTCSEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhhHHHHHhcCCCCcEEEEecCCCChHHHHHHHcCCCEEEEe
Confidence            36899999999999999999999999999999987543110     0 11246889999999999999999999999999


Q ss_pred             cccCCC----C-ccchhhhHHHHHHHHHHHHHcC-CCEEEEEec-c-ccCcC---------Cc---------C----Ccc
Q 028890          129 VGGFGS----N-SYMYKINGTANINAIRAASEKG-VKRFVYISA-A-DFGVA---------NY---------L----LQG  178 (202)
Q Consensus       129 a~~~~~----~-~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS-~-~~~~~---------~~---------~----~~~  178 (202)
                      |+....    + ...+++|+.|+.+++++|.+.+ +++|||+|| + .++.+         ..         +    ..+
T Consensus        88 A~~~~~~~~~~~~~~~~~nv~gt~~ll~aa~~~~~v~r~V~~SS~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~~  167 (338)
T 2rh8_A           88 ATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWG  167 (338)
T ss_dssp             SSCCCC---------CHHHHHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHTCSCCCCCTTTTTCC-------CCCCC
T ss_pred             CCccCCCCCCcHHHHHHHHHHHHHHHHHHHHHcCCcCEEEEEecHHHeecCCcCCCCcccChhhccchhhccccCCccch
Confidence            986431    2 2378899999999999999986 899999999 3 22110         00         1    115


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.++|++++.|.
T Consensus       168 Y~~sK~~~E~~~~~~~  183 (338)
T 2rh8_A          168 YPASKTLAEKAAWKFA  183 (338)
T ss_dssp             CTTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis}

Probab=99.90  E-value=4.3e-23  Score=176.19  Aligned_cols=143  Identities=19%  Similarity=0.246  Sum_probs=117.9

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHC---CCeEEEEecCCCCccc--------------------ccCCCceeEEEcc
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDR---GLTVASLSRSGRSSLR--------------------DSWANNVIWHQGN  108 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~---g~~V~~l~r~~~~~~~--------------------~~~~~~~~~~~~D  108 (202)
                      ...++|+|+||||+||||++++++|+++   |++|++++|+......                    .....+++++.+|
T Consensus        69 ~~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~v~~D  148 (478)
T 4dqv_A           69 PSPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDSGDPELLRHFKELAADRLEVVAGD  148 (478)
T ss_dssp             CCSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCSSCHHHHHHHHHHHTTTEEEEECC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHhcchhhhhhhhhhccCceEEEEeE
Confidence            4457899999999999999999999999   8999999998653210                    0113689999999


Q ss_pred             CC------CHhhHHHHhcCccEeEEccccCC--CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcC----
Q 028890          109 LL------SSDSWKEALDGVTAVISCVGGFG--SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYL----  175 (202)
Q Consensus       109 ~~------~~~~~~~~~~~~d~vi~~a~~~~--~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~----  175 (202)
                      +.      |.+.+.++++++|+||||||..+  ++...+++|+.++.+++++|++.++++|||+|| .+|+.....    
T Consensus       149 l~~~~~gld~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~~~~~V~iSS~~v~~~~~~~~~~E  228 (478)
T 4dqv_A          149 KSEPDLGLDQPMWRRLAETVDLIVDSAAMVNAFPYHELFGPNVAGTAELIRIALTTKLKPFTYVSTADVGAAIEPSAFTE  228 (478)
T ss_dssp             TTSGGGGCCHHHHHHHHHHCCEEEECCSSCSBSSCCEEHHHHHHHHHHHHHHHTSSSCCCEEEEEEGGGGTTSCTTTCCS
T ss_pred             CCCcccCCCHHHHHHHHcCCCEEEECccccCCcCHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeehhhcCccCCCCcCC
Confidence            98      66789999999999999999754  456788999999999999999999999999999 566542111    


Q ss_pred             -----------------CcchHHHHHHHHHHHHHhc
Q 028890          176 -----------------LQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       176 -----------------~~~Y~~sK~~~E~~~~~~~  194 (202)
                                       .+.|+.+|+++|.+++.+.
T Consensus       229 ~~~~~p~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  264 (478)
T 4dqv_A          229 DADIRVISPTRTVDGGWAGGYGTSKWAGEVLLREAN  264 (478)
T ss_dssp             SSCHHHHCCEEECCTTSEECHHHHHHHHHHHHHHHH
T ss_pred             cccccccCcccccccccccchHHHHHHHHHHHHHHH
Confidence                             1449999999999999874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=99.89  E-value=3.3e-23  Score=159.45  Aligned_cols=128  Identities=21%  Similarity=0.142  Sum_probs=104.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~  136 (202)
                      |+|+||||+|+||++++++|+++|++|++++|++.+. ......+++++.+|+.|+++  +.+.++|+||||||.... .
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-~~~~~~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~~-~   76 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-ADRLGATVATLVKEPLVLTE--ADLDSVDAVVDALSVPWG-S   76 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHTCTTSEEEECCGGGCCH--HHHTTCSEEEECCCCCTT-S
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc-ccccCCCceEEecccccccH--hhcccCCEEEECCccCCC-c
Confidence            5799999999999999999999999999999986442 22234689999999999887  788899999999998522 2


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccC-cCC------------cCCcchHHHHHHHHHH
Q 028890          137 YMYKINGTANINAIRAASEKGVKRFVYISA-ADFG-VAN------------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       137 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~-~~~------------~~~~~Y~~sK~~~E~~  189 (202)
                      ....+|+.++.+++++|++.+ ++||++|| +.+. ...            .+.+.|+.+|..+|.+
T Consensus        77 ~~~~~n~~~~~~l~~a~~~~~-~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~~~y~~sK~~~e~~  142 (224)
T 3h2s_A           77 GRGYLHLDFATHLVSLLRNSD-TLAVFILGSASLAMPGADHPMILDFPESAASQPWYDGALYQYYEY  142 (224)
T ss_dssp             SCTHHHHHHHHHHHHTCTTCC-CEEEEECCGGGSBCTTCSSCGGGGCCGGGGGSTTHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHcC-CcEEEEecceeeccCCCCccccccCCCCCccchhhHHHHHHHHHH
Confidence            346789999999999999999 99999998 3332 111            1257899999999965

>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0

Probab=99.89  E-value=3.3e-23  Score=165.24  Aligned_cols=121  Identities=17%  Similarity=0.238  Sum_probs=106.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~-  133 (202)
                      |+|+||||+|+||++++++|+++|++|++++|.                .+|+.|++.+.++++  ++|+|||+|+... 
T Consensus         6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~----------------~~D~~d~~~~~~~~~~~~~d~vi~~a~~~~~   69 (287)
T 3sc6_A            6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK----------------LLDITNISQVQQVVQEIRPHIIIHCAAYTKV   69 (287)
T ss_dssp             EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT----------------TSCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc----------------ccCCCCHHHHHHHHHhcCCCEEEECCcccCh
Confidence            499999999999999999999999999999993                279999999999998  6999999999754 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHHHhc
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           ++...+++|+.++.+++++|++.++ +|||+|| .+|+..          ..+.+.|+.+|.++|++++.+.
T Consensus        70 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  145 (287)
T 3sc6_A           70 DQAEKERDLAYVINAIGARNVAVASQLVGA-KLVYISTDYVFQGDRPEGYDEFHNPAPINIYGASKYAGEQFVKELH  145 (287)
T ss_dssp             HHHTTCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCCCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEchhhhcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHhC
Confidence                 4566789999999999999999987 8999999 677643          2345789999999999999875

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=99.89  E-value=7.8e-23  Score=159.64  Aligned_cols=135  Identities=19%  Similarity=0.222  Sum_probs=109.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ++|+|+||||+|+||++++++|+++  |++|++++|++.+..  ....+++++.+|+.|++++.++++++|+||||||..
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~--~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~   80 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE--KIGGEADVFIGDITDADSINPAFQGIDALVILTSAV   80 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHH--HTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchh--hcCCCeeEEEecCCCHHHHHHHHcCCCEEEEecccc
Confidence            5689999999999999999999999  899999999754321  113578899999999999999999999999999864


Q ss_pred             CC------------C-------ccchhhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcCCcCC-----cchHHHHHHHH
Q 028890          133 GS------------N-------SYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVANYLL-----QGYYEGKVLSS  187 (202)
Q Consensus       133 ~~------------~-------~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~-~~~~~~~~~-----~~Y~~sK~~~E  187 (202)
                      ..            +       ...+++|+.++.++++++++.++++||++||. ++. ...+.     ..|+.+|..+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~SS~~~~~-~~~~~~~~~~~~y~~sK~~~e  159 (253)
T 1xq6_A           81 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTN-PDHPLNKLGNGNILVWKRKAE  159 (253)
T ss_dssp             CEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTC-TTCGGGGGGGCCHHHHHHHHH
T ss_pred             ccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCCEEEEEcCccCCC-CCCccccccchhHHHHHHHHH
Confidence            21            1       12468999999999999999999999999993 332 22222     35778999999


Q ss_pred             HHHHH
Q 028890          188 DVAAC  192 (202)
Q Consensus       188 ~~~~~  192 (202)
                      .+++.
T Consensus       160 ~~~~~  164 (253)
T 1xq6_A          160 QYLAD  164 (253)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            99986

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=99.89  E-value=6e-23  Score=163.68  Aligned_cols=140  Identities=14%  Similarity=0.121  Sum_probs=111.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|+|
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            56899999999999999999999999999999998654211  1224578999999999999888776       68999


Q ss_pred             EEccccCC----------CCccchhhhHHHHHH----HHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFG----------SNSYMYKINGTANIN----AIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~----------~~~~~~~~n~~~~~~----~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||...          ++...+++|+.++.+    +++.+++.+.++||++||.....+..+...|+.||.+.|.+++
T Consensus        84 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~  163 (281)
T 3m1a_A           84 VNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSGSVVNISSFGGQLSFAGFSAYSATKAALEQLSE  163 (281)
T ss_dssp             EECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEcCccccCCCCCchHHHHHHHHHHHHHH
Confidence            99999532          123467899999554    4555566777899999994333345566889999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       164 ~la  166 (281)
T 3m1a_A          164 GLA  166 (281)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2

Probab=99.89  E-value=2.1e-23  Score=159.49  Aligned_cols=129  Identities=16%  Similarity=0.150  Sum_probs=111.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ++|+|+||||+|+||++++++|+++|+  +|++++|++..     ...+++++.+|+.|++++.+++  +|+||||||..
T Consensus         4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~-----~~~~~~~~~~D~~~~~~~~~~~--~d~vi~~a~~~   76 (215)
T 2a35_A            4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA-----EHPRLDNPVGPLAELLPQLDGS--IDTAFCCLGTT   76 (215)
T ss_dssp             CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC-----CCTTEECCBSCHHHHGGGCCSC--CSEEEECCCCC
T ss_pred             CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc-----cCCCceEEeccccCHHHHHHhh--hcEEEECeeec
Confidence            457999999999999999999999998  99999998754     2357889999999999888877  99999999964


Q ss_pred             C----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          133 G----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       133 ~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      .    ++...+++|+.++.++++++++.++++||++|| ..++   .+.+.|+.+|..+|++++.+
T Consensus        77 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~Ss~~~~~---~~~~~y~~sK~~~e~~~~~~  139 (215)
T 2a35_A           77 IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSALGADA---KSSIFYNRVKGELEQALQEQ  139 (215)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCTTCCT---TCSSHHHHHHHHHHHHHTTS
T ss_pred             cccCCCHHHHHHhhHHHHHHHHHHHHHcCCCEEEEECCcccCC---CCccHHHHHHHHHHHHHHHc
Confidence            3    445678899999999999999999999999999 4454   34568999999999999864

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=99.89  E-value=1.1e-22  Score=162.07  Aligned_cols=128  Identities=16%  Similarity=0.191  Sum_probs=108.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      |+|+||||+|+||++++++|+++  |++|++++|++.+.. .....+++++.+|+.|++++.++++++|+|||+|+... 
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~-   78 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKAS-TLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHY-   78 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTH-HHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCS-
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHh-HHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCc-
Confidence            57999999999999999999999  999999999865421 11225788999999999999999999999999998631 


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                       .  .++|+.++.+++++|++.++++|||+|| .++.    ...+|+.+|..+|++++.+
T Consensus        79 -~--~~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~~~----~~~~y~~~K~~~E~~~~~~  131 (287)
T 2jl1_A           79 -D--NTLLIVQHANVVKAARDAGVKHIAYTGYAFAEE----SIIPLAHVHLATEYAIRTT  131 (287)
T ss_dssp             -C--HHHHHHHHHHHHHHHHHTTCSEEEEEEETTGGG----CCSTHHHHHHHHHHHHHHT
T ss_pred             -C--chHHHHHHHHHHHHHHHcCCCEEEEECCCCCCC----CCCchHHHHHHHHHHHHHc
Confidence             1  2579999999999999999999999999 4432    2358999999999999863

>1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A*

Probab=99.89  E-value=1.4e-22  Score=163.86  Aligned_cols=124  Identities=19%  Similarity=0.243  Sum_probs=106.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~  133 (202)
                      +|+|+||||+|+||++++++|+++|++|++++|+.               .+|+.|++++.++++  ++|+|||+|+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~---------------~~D~~d~~~~~~~~~~~~~d~vih~a~~~~   67 (321)
T 1e6u_A            3 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD---------------ELNLLDSRAVHDFFASERIDQVYLAAAKVG   67 (321)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT---------------TCCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc---------------cCCccCHHHHHHHHHhcCCCEEEEcCeecC
Confidence            47999999999999999999999999999988752               269999999999998  8999999999754


Q ss_pred             -------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcC-CcchHHHHHHHHHHH
Q 028890          134 -------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYL-LQGYYEGKVLSSDVA  190 (202)
Q Consensus       134 -------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~--------------~~~-~~~Y~~sK~~~E~~~  190 (202)
                             ++...+++|+.++.+++++|++.++++|||+|| .+|+..              ..+ .+.|+.+|.++|+++
T Consensus        68 ~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~~~  147 (321)
T 1e6u_A           68 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLC  147 (321)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHH
T ss_pred             CcchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccHHHcCCCCCCCcCccccccCCCCCCCCccHHHHHHHHHHH
Confidence                   335577899999999999999999999999999 667632              112 248999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       148 ~~~~  151 (321)
T 1e6u_A          148 ESYN  151 (321)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A*

Probab=99.89  E-value=1e-22  Score=167.23  Aligned_cols=137  Identities=18%  Similarity=0.222  Sum_probs=110.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-----CccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d~vi~~  128 (202)
                      ++|+|+||||+||||++++++|+++| ++|++++|+........ ..++. +.+|+.|++.+.++++     ++|+|||+
T Consensus        45 ~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~Vih~  122 (357)
T 2x6t_A           45 EGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVN-LVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHE  122 (357)
T ss_dssp             ---CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGGGGG-TTTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEEC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcchhhc-ccCce-EeeecCcHHHHHHHHhhcccCCCCEEEEC
Confidence            45799999999999999999999999 99999999765421111 12333 7789999999999887     59999999


Q ss_pred             cccCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHh
Q 028890          129 VGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       129 a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ||...    ++...+++|+.++.+++++|++.++ +|||+|| .+|+...          .+.++|+.+|.++|++++.+
T Consensus       123 A~~~~~~~~~~~~~~~~n~~~~~~ll~a~~~~~~-r~V~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  201 (357)
T 2x6t_A          123 GACSSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVFGYSKFLFDEYVRQI  201 (357)
T ss_dssp             CSCCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGCSCSSCCCSSGGGCCCSSHHHHHHHHHHHHHHHH
T ss_pred             CcccCCccCCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEcchHHhCCCCCCCcCCcCCCCCCChhHHHHHHHHHHHHHH
Confidence            99754    2345788999999999999999998 9999999 6676433          23568999999999999987


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      .
T Consensus       202 ~  202 (357)
T 2x6t_A          202 L  202 (357)
T ss_dssp             G
T ss_pred             H
Confidence            5

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=99.89  E-value=3.2e-23  Score=158.99  Aligned_cols=126  Identities=17%  Similarity=0.153  Sum_probs=102.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCCc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNS  136 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~~  136 (202)
                      |+|+||||+|+||++++++|+++|++|++++|++.+.... . .+++++.+|+.|+++  +.+.++|+||||||...   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~-~~~~~~~~D~~d~~~--~~~~~~d~vi~~ag~~~---   73 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-H-KDINILQKDIFDLTL--SDLSDQNVVVDAYGISP---   73 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-C-SSSEEEECCGGGCCH--HHHTTCSEEEECCCSST---
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-c-CCCeEEeccccChhh--hhhcCCCEEEECCcCCc---
Confidence            5899999999999999999999999999999986542211 1 688999999999887  78899999999999843   


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCEEEEEec-ccc-CcC----------CcCCcchHHHHHHHHHH
Q 028890          137 YMYKINGTANINAIRAASEKGVKRFVYISA-ADF-GVA----------NYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       137 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~-~~~----------~~~~~~Y~~sK~~~E~~  189 (202)
                      .....|+.++.+++++|++.+++++|++|| ..+ +.+          ..+.+.|+.+|...|.+
T Consensus        74 ~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~~~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~  138 (221)
T 3ew7_A           74 DEAEKHVTSLDHLISVLNGTVSPRLLVVGGAASLQIDEDGNTLLESKGLREAPYYPTARAQAKQL  138 (221)
T ss_dssp             TTTTSHHHHHHHHHHHHCSCCSSEEEEECCCC-------------------CCCSCCHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHhcCCceEEEEecceEEEcCCCCccccccCCCCCHHHHHHHHHHHHHH
Confidence            246779999999999999998899999999 332 222          12456799999999987

>1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A*

Probab=99.89  E-value=5.4e-23  Score=164.75  Aligned_cols=124  Identities=17%  Similarity=0.157  Sum_probs=106.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC--ccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~~~~-  133 (202)
                      |+|+||||+|+||++++++|+ +|++|++++|+..            ++.+|+.|++++.+++++  +|+|||+|+... 
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~------------~~~~D~~d~~~~~~~~~~~~~d~vih~a~~~~~   67 (299)
T 1n2s_A            1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHSK------------EFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAV   67 (299)
T ss_dssp             CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTCS------------SSCCCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CeEEEECCCCHHHHHHHHHhh-cCCeEEEeccccc------------cccccCCCHHHHHHHHHhcCCCEEEECcccCCH
Confidence            589999999999999999999 8999999998751            357899999999999986  999999999643 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           ++...+++|+.++.+++++|++.++ +|||+|| .+|+...          .+.+.|+.+|.++|++++.+.
T Consensus        68 ~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~vy~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~~  143 (299)
T 1n2s_A           68 DKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNC  143 (299)
T ss_dssp             HHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHHHHHHC
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEecccEEeCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHhC
Confidence                 3456788999999999999998887 8999999 6676432          235789999999999999874

>4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens}

Probab=99.89  E-value=5.1e-23  Score=165.40  Aligned_cols=129  Identities=22%  Similarity=0.200  Sum_probs=104.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC--ccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~~  131 (202)
                      .++|+|+||||+|+||++++++|+++|+      +....      ...++++.+|+.|++.+.+++++  +|+|||+|+.
T Consensus         4 ~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~~------~~~~~~~~~D~~d~~~~~~~~~~~~~d~Vih~A~~   71 (319)
T 4b8w_A            4 FQSMRILVTGGSGLVGKAIQKVVADGAG------LPGED------WVFVSSKDADLTDTAQTRALFEKVQPTHVIHLAAM   71 (319)
T ss_dssp             CCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTCE------EEECCTTTCCTTSHHHHHHHHHHSCCSEEEECCCC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHhcCC------ccccc------ccccCceecccCCHHHHHHHHhhcCCCEEEECcee
Confidence            4678999999999999999999999998      11110      12455567999999999999987  9999999997


Q ss_pred             CC-------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC--------------cCCc-chHHHHHHHHH
Q 028890          132 FG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN--------------YLLQ-GYYEGKVLSSD  188 (202)
Q Consensus       132 ~~-------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~--------------~~~~-~Y~~sK~~~E~  188 (202)
                      ..       ++...+++|+.++.+++++|++.++++|||+|| .+|+...              .+.+ +|+.+|.++|+
T Consensus        72 ~~~~~~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~~~v~~SS~~vyg~~~~~~~~E~~~~~~~~~p~~~~Y~~sK~~~E~  151 (319)
T 4b8w_A           72 VGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDV  151 (319)
T ss_dssp             CCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCGGGSCSSCCSSBCGGGGGBSCCCSSSHHHHHHHHHHHH
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEcchhhcCCCCCCCccccccccCCCCCCcchHHHHHHHHHH
Confidence            53       334578999999999999999999999999999 6776422              2223 59999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.|.
T Consensus       152 ~~~~~~  157 (319)
T 4b8w_A          152 QNRAYF  157 (319)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A*

Probab=99.89  E-value=3.4e-22  Score=163.33  Aligned_cols=136  Identities=19%  Similarity=0.218  Sum_probs=107.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c-cCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      +.++|+|+||||+||||++++++|+++|++|++++|.......   . ....+++++.+|+.++.     +.++|+|||+
T Consensus        24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-----~~~~d~vih~   98 (343)
T 2b69_A           24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPL-----YIEVDQIYHL   98 (343)
T ss_dssp             ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCC-----CCCCSEEEEC
T ss_pred             ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchhhhhhhccCCceEEEeCccCChh-----hcCCCEEEEC
Confidence            3467899999999999999999999999999999997543211   1 11357899999998753     5689999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC---------------CcCCcchHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA---------------NYLLQGYYEGKVLS  186 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~---------------~~~~~~Y~~sK~~~  186 (202)
                      |+...      ++...+++|+.++.+++++|++.++ +|||+|| .+|+..               ..+.+.|+.+|.++
T Consensus        99 A~~~~~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~  177 (343)
T 2b69_A           99 ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVA  177 (343)
T ss_dssp             CSCCSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHH
T ss_pred             ccccCchhhhhCHHHHHHHHHHHHHHHHHHHHHhCC-cEEEECcHHHhCCCCCCCCcccccccCCCCCCCCchHHHHHHH
Confidence            99643      3345678999999999999999886 9999999 666532               22345799999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |++++.+.
T Consensus       178 E~~~~~~~  185 (343)
T 2b69_A          178 ETMCYAYM  185 (343)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1

Probab=99.88  E-value=2.4e-22  Score=177.67  Aligned_cols=139  Identities=19%  Similarity=0.229  Sum_probs=114.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhh-HHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS-WKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~-~~~~~~~~d~vi~~a~~~  132 (202)
                      ++|+|+||||+||||++++++|+++ |++|++++|+...........+++++.+|+.|+++ +.++++++|+||||||..
T Consensus       314 ~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~D~Vih~Aa~~  393 (660)
T 1z7e_A          314 RRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIA  393 (660)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTGGGTTCTTEEEEECCTTTCHHHHHHHHHHCSEEEECCCCC
T ss_pred             cCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhhhhccCCceEEEECCCCCcHHHHHHhhcCCCEEEECceec
Confidence            5689999999999999999999998 89999999986543222224589999999998765 778888999999999965


Q ss_pred             C------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchHHHHHHHHH
Q 028890          133 G------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKVLSSD  188 (202)
Q Consensus       133 ~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------------~~~~~Y~~sK~~~E~  188 (202)
                      .      ++...+++|+.++.+++++|++.+ ++|||+|| .+|+...                 .+.+.|+.+|.++|+
T Consensus       394 ~~~~~~~~~~~~~~~Nv~gt~~ll~aa~~~~-~r~V~~SS~~vyg~~~~~~~~E~~~~~~~~p~~~p~~~Y~~sK~~~E~  472 (660)
T 1z7e_A          394 TPIEYTRNPLRVFELDFEENLRIIRYCVKYR-KRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDR  472 (660)
T ss_dssp             CTHHHHHSHHHHHHHHTHHHHHHHHHHHHTT-CEEEEECCGGGGBTCCSSSBCTTTCCEEECCTTCTTHHHHHHHHHHHH
T ss_pred             CccccccCHHHHHHhhhHHHHHHHHHHHHhC-CEEEEEecHHHcCCCCCcccCCCccccccCcccCCCCCcHHHHHHHHH
Confidence            4      234577899999999999999988 89999999 6665321                 123479999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       473 ~~~~~~  478 (660)
T 1z7e_A          473 VIWAYG  478 (660)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998764

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=99.88  E-value=8.4e-23  Score=161.52  Aligned_cols=142  Identities=16%  Similarity=0.130  Sum_probs=110.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+..+........++.++.+|++|++++.++++       ++|++
T Consensus        24 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~l  103 (260)
T 3gem_A           24 TLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRAV  103 (260)
T ss_dssp             ---CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            34678999999999999999999999999999999987543222222357899999999998888775       68999


Q ss_pred             EEccccCCC---------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          126 ISCVGGFGS---------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       126 i~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||||....         +...+++|+.++.++.+++.    +.+.++||++||.....+..+...|+.+|.+.+.+++.
T Consensus       104 v~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~  183 (260)
T 3gem_A          104 VHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVADIVHISDDVTRKGSSKHIAYCATKAGLESLTLS  183 (260)
T ss_dssp             EECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGTCCSSCHHHHHHHHHHHHHHHH
T ss_pred             EECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEECChhhcCCCCCcHhHHHHHHHHHHHHHH
Confidence            999996432         23577899999998888774    34567999999943333344567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       184 la  185 (260)
T 3gem_A          184 FA  185 (260)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.88  E-value=2.4e-22  Score=158.91  Aligned_cols=142  Identities=18%  Similarity=0.145  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.....      ......++.++.+|++|+++++++++      
T Consensus         7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (262)
T 3pk0_A            7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEF   86 (262)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            457889999999999999999999999999999999864311      11112578999999999999888776      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccc-cCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAAD-FGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~-~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||....          +...+++|+.++.++.+++.+    .+.+++|++||.. ...+..+...|+.+|.
T Consensus        87 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~  166 (262)
T 3pk0_A           87 GGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSGRVVLTSSITGPITGYPGWSHYGATKA  166 (262)
T ss_dssp             SCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSCEEEEECCSBTTTBCCTTCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEechhhccCCCCCChhhHHHHH
Confidence             79999999996431          244678999999988887654    3678999999942 2234455678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       167 a~~~l~~~la  176 (262)
T 3pk0_A          167 AQLGFMRTAA  176 (262)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988864

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=99.88  E-value=5.2e-22  Score=152.84  Aligned_cols=127  Identities=14%  Similarity=0.170  Sum_probs=105.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHH-HCCCeEEEEecCCC-Cccccc--CCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGR-SSLRDS--WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll-~~g~~V~~l~r~~~-~~~~~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++|+||||+|+||++++++|+ ++|++|++++|++. +. ...  ...+++++.+|+.|++++.++++++|+||||+|.
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRI-PPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME   83 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHS-CHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccc-hhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence            4569999999999999999999 89999999999865 32 211  3468999999999999999999999999999986


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcC--------Cc-chHHHHHHHHHHHHHh
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYL--------LQ-GYYEGKVLSSDVAACQ  193 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~--------~~-~Y~~sK~~~E~~~~~~  193 (202)
                      .         |+. +.++++++++.++++||++|| ..++..+..        .. .|+.+|..+|.+++.+
T Consensus        84 ~---------n~~-~~~~~~~~~~~~~~~iv~iSs~~~~~~~~~~~~~~~~~~~~~~y~~~K~~~e~~~~~~  145 (221)
T 3r6d_A           84 S---------GSD-MASIVKALSRXNIRRVIGVSMAGLSGEFPVALEKWTFDNLPISYVQGERQARNVLRES  145 (221)
T ss_dssp             C---------HHH-HHHHHHHHHHTTCCEEEEEEETTTTSCSCHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred             C---------Chh-HHHHHHHHHhcCCCeEEEEeeceecCCCCcccccccccccccHHHHHHHHHHHHHHhC
Confidence            3         444 889999999999999999999 555432211        11 7999999999999863

>4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus}

Probab=99.88  E-value=2.6e-23  Score=178.71  Aligned_cols=186  Identities=15%  Similarity=0.203  Sum_probs=113.4

Q ss_pred             HHHHHhcCCCcccccchhhhccCCcccccCCCccCCccc-cc-c-----cccCCCCCCCCCeEEEEccCChhHHHHHHHH
Q 028890            4 IVSRLINSRSSVSRLSAITASGNGRYLSTDSNKVDEPLK-VE-E-----AETVNVPPPPSEKLLVLGGNGFVGSHICREA   76 (202)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~-----~~~~~~~~~~~~~vlVtGa~G~iG~~l~~~L   76 (202)
                      |..+.++.+|++..++..+............ ... ... .. .     ..........+|+|+|||||||||++++++|
T Consensus        93 ~~~~~~~~~~t~~~la~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~VLVTGatG~iG~~l~~~L  170 (508)
T 4f6l_B           93 ISMQTLYQYKTVRQIVNYMYQNQQSLVALPD-NLS-ELQKIVMSRYNLGILEDSLSHRPLGNTLLTGATGFLGAYLIEAL  170 (508)
T ss_dssp             --------------------------CCCCS-THH-HHHHHHHHHHTTCCCSTTSCBCCCEEEEESCTTSHHHHHHHHHT
T ss_pred             ccHHHHhcCCcHHHHHHHHHhhccccccchh-hhH-HHHHHhhhcccccccccccccCCCCeEEEECCccchHHHHHHHH
Confidence            4456677889988888776543221100000 000 000 00 0     0001122335689999999999999999999


Q ss_pred             HHCCCeEEEEecCCCCcc-----------------cccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC---CCc
Q 028890           77 LDRGLTVASLSRSGRSSL-----------------RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG---SNS  136 (202)
Q Consensus        77 l~~g~~V~~l~r~~~~~~-----------------~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~---~~~  136 (202)
                      ++.|++|+|++|+.....                 ......+++++.+|+.|++.+. +..++|+|||||+...   ++.
T Consensus       171 ~~~g~~V~~l~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~-~~~~~D~Vih~Aa~~~~~~~~~  249 (508)
T 4f6l_B          171 QGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDVV-LPENMDTIIHAGARTDHFGDDD  249 (508)
T ss_dssp             BTTEEEEEEEEESSSHHHHHHHHHHHHHHHSCHHHHHHHSTTEEEEEEBTTBCSSCC-CSSCCSEEEECCCC--------
T ss_pred             HhcCCEEEEEECCCChHHHHHHHHHHHHHhcccccchhccCceEEEecCCcccccCC-CccCCCEEEECCceecCCCCHH
Confidence            999999999999876210                 1122468999999999988787 7788999999999754   456


Q ss_pred             cchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC------------------CcCCcchHHHHHHHHHHHHHhc
Q 028890          137 YMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA------------------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       137 ~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~------------------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..+++|+.++.+++++|++ +.++|||+|| .+ |..                  ..+.++|+.+|+.+|++++.+.
T Consensus       250 ~~~~~Nv~gt~~ll~~a~~-~~~~~v~iSS~~v-G~~~~~~~~~~~~~E~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  324 (508)
T 4f6l_B          250 EFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISV-GTYFDIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLEAV  324 (508)
T ss_dssp             CCHHHHHHHHHHHHHHHHT-TTCEEEEEEESCT-TSEECTTCSCCEECTTCSCSSBCCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHHHh-CCCcEEEeCChhh-ccCCccCCcCcccccccccccccCCCcHHHHHHHHHHHHHHHH
Confidence            6788999999999999988 6789999999 44 221                  1246789999999999999864

>3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti}

Probab=99.88  E-value=5.7e-22  Score=156.70  Aligned_cols=137  Identities=15%  Similarity=0.124  Sum_probs=112.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.....    ..++.++.+|++|++++.++++       ++|++|
T Consensus        26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv  101 (260)
T 3un1_A           26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPSA----DPDIHTVAGDISKPETADRIVREGIERFGRIDSLV  101 (260)
T ss_dssp             TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCCS----STTEEEEESCTTSHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc----cCceEEEEccCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            46789999999999999999999999999999999865422    2478999999999999888876       799999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccC-cCCcCCcchHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFG-VANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~-~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      ||||...          .+...+++|+.++.++++++    ++.+.+++|++||. .+. .+..+...|+.||.+.+.+.
T Consensus       102 ~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sKaa~~~l~  181 (260)
T 3un1_A          102 NNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSGHIVSITTSLVDQPMVGMPSALASLTKGGLNAVT  181 (260)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCTTTTSCBTTCCCHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEEechhhccCCCCCccHHHHHHHHHHHHHH
Confidence            9999643          12456789999999988877    45667899999993 332 33445578999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       182 ~~la  185 (260)
T 3un1_A          182 RSLA  185 (260)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus}

Probab=99.88  E-value=1.1e-22  Score=171.08  Aligned_cols=140  Identities=17%  Similarity=0.240  Sum_probs=110.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----------------cccCCCceeEEEccCCCHhhH
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------------RDSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----------------~~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ...+++|+||||+|+||++++++|+++|++|++++|+.....                 ......++.++.+|+.|++++
T Consensus        66 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l  145 (427)
T 4f6c_A           66 HRPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIEVIVGDFECMDDV  145 (427)
T ss_dssp             CCCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHHHHHHHHHHHHSCHHHHHHHHTTEEEEEECC---CCC
T ss_pred             CCCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHHHHHHHHHHHhccccccccccCceEEEeCCCCCcccC
Confidence            346789999999999999999999999999999999876210                 011136899999999998888


Q ss_pred             HHHhcCccEeEEccccCC---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcC------------------Cc
Q 028890          116 KEALDGVTAVISCVGGFG---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVA------------------NY  174 (202)
Q Consensus       116 ~~~~~~~d~vi~~a~~~~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~------------------~~  174 (202)
                      . .+.++|+||||||...   ++...+++|+.++.+++++|.+ ++++|||+||...|..                  ..
T Consensus       146 ~-~~~~~d~Vih~A~~~~~~~~~~~~~~~Nv~g~~~l~~aa~~-~~~~~v~~SS~~~G~~~~~~~~~~~~~E~~~~~~~~  223 (427)
T 4f6c_A          146 V-LPENMDTIIHAGARTDHFGDDDEFEKVNVQGTVDVIRLAQQ-HHARLIYVSTISVGTYFDIDTEDVTFSEADVYKGQL  223 (427)
T ss_dssp             C-CSSCCSEEEECCCCC-------CHHHHHHHHHHHHHHHHHH-TTCEEEEEEEGGGGSEECSSCSCCEECTTCSCSSCC
T ss_pred             C-CcCCCCEEEECCcccCCCCCHHHHHHHHHHHHHHHHHHHHh-cCCcEEEECchHhCCCccCCCCCccccccccccCCC
Confidence            7 7788999999999754   4567889999999999999998 7789999999322321                  22


Q ss_pred             CCcchHHHHHHHHHHHHHhc
Q 028890          175 LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.+.|+.+|+++|.+++.+.
T Consensus       224 ~~~~Y~~sK~~~E~~~~~~~  243 (427)
T 4f6c_A          224 LTSPYTRSKFYSELKVLEAV  243 (427)
T ss_dssp             CCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHH
Confidence            56789999999999999864

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=99.88  E-value=4.6e-22  Score=159.90  Aligned_cols=143  Identities=20%  Similarity=0.161  Sum_probs=113.7

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ...++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++     
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  116 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDA  116 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHH
Confidence            34578899999999999999999999999999999998654211      1112578999999999998887765     


Q ss_pred             --CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK  183 (202)
                        ++|++|||||....          +...+++|+.++.++++++    ++.+.++||++||. ....+......|+.+|
T Consensus       117 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~asK  196 (293)
T 3rih_A          117 FGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRGRVILTSSITGPVTGYPGWSHYGASK  196 (293)
T ss_dssp             HSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSCEEEEECCSBTTTBBCTTCHHHHHHH
T ss_pred             cCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEeChhhccCCCCCCHHHHHHH
Confidence              57999999996431          2457899999999988887    45667899999994 2223445567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+.+.++
T Consensus       197 aa~~~l~~~la  207 (293)
T 3rih_A          197 AAQLGFMRTAA  207 (293)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=99.88  E-value=2.2e-22  Score=161.39  Aligned_cols=143  Identities=19%  Similarity=0.162  Sum_probs=115.9

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc---CccEeE
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD---GVTAVI  126 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi  126 (202)
                      ...++|+++||||+|+||++++++|+++|++|++++|+..+..  ......++.++.+|++|++++.++++   ++|++|
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv   91 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLI   91 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            3457889999999999999999999999999999999864321  11224578999999999999999887   579999


Q ss_pred             EccccCC--------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC------------CcCCcchHHHHHH
Q 028890          127 SCVGGFG--------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA------------NYLLQGYYEGKVL  185 (202)
Q Consensus       127 ~~a~~~~--------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~------------~~~~~~Y~~sK~~  185 (202)
                      ||||...        .+...+++|+.++.++++++.....++||++|| ..+...            ..+...|+.||.+
T Consensus        92 ~nAg~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~riv~isS~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a  171 (291)
T 3rd5_A           92 NNAGIMAVPYALTVDGFESQIGTNHLGHFALTNLLLPRLTDRVVTVSSMAHWPGRINLEDLNWRSRRYSPWLAYSQSKLA  171 (291)
T ss_dssp             ECCCCCSCCCCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEEEEEEECCGGGTTCCCCSSCTTCSSSCCCHHHHHHHHHHH
T ss_pred             ECCcCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEeechhhccCCCCcccccccccCCCCcchHHHHHHH
Confidence            9999643        345688999999999999998877779999999 433221            1234579999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       172 ~~~~~~~la  180 (291)
T 3rd5_A          172 NLLFTSELQ  180 (291)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=99.88  E-value=8.1e-22  Score=156.65  Aligned_cols=141  Identities=16%  Similarity=0.106  Sum_probs=114.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|+
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   88 (271)
T 3tzq_B            9 LENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLDI   88 (271)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999998755211  1124578899999999999888876       7899


Q ss_pred             eEEccccCCC------------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          125 VISCVGGFGS------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       125 vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|||||....            +...+++|+.++.++.+++    ++.+.++||++||.....+..+...|+.+|.+.+.
T Consensus        89 lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~  168 (271)
T 3tzq_B           89 VDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGGAIVNISSATAHAAYDMSTAYACTKAAIET  168 (271)
T ss_dssp             EEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSBCSSCHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCHHHcCCCCCChHHHHHHHHHHH
Confidence            9999997521            2357889999999998887    56667799999994333344556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       169 l~~~la  174 (271)
T 3tzq_B          169 LTRYVA  174 (271)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=99.88  E-value=3.1e-22  Score=161.49  Aligned_cols=130  Identities=20%  Similarity=0.213  Sum_probs=103.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC---cccc----cCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS---SLRD----SWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~---~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      .++|+|+||||+|+||++++++|+++|++|++++|+...   ....    ....+++++.+|+.          ++|+||
T Consensus         5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~----------~~d~vi   74 (321)
T 3vps_A            5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEGTGKFLEKPVLELEERDLS----------DVRLVY   74 (321)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTTSSEEECSCGGGCCHHHHT----------TEEEEE
T ss_pred             cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhhhhhhccCCCeeEEeCccc----------cCCEEE
Confidence            357899999999999999999999999999999997652   1111    11245666666654          899999


Q ss_pred             EccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHH
Q 028890          127 SCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       127 ~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~  189 (202)
                      |+|+...      .+...++ |+.++.+++++|++.++++|||+|| .+|+...          .+.+.|+.+|.++|++
T Consensus        75 ~~a~~~~~~~~~~~~~~~~~-n~~~~~~ll~a~~~~~v~~~v~~SS~~v~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~  153 (321)
T 3vps_A           75 HLASHKSVPRSFKQPLDYLD-NVDSGRHLLALCTSVGVPKVVVGSTCEVYGQADTLPTPEDSPLSPRSPYAASKVGLEMV  153 (321)
T ss_dssp             ECCCCCCHHHHTTSTTTTHH-HHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHH
T ss_pred             ECCccCChHHHHhCHHHHHH-HHHHHHHHHHHHHHcCCCeEEEecCHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHHH
Confidence            9999643      4455677 9999999999999999999999999 6676432          2457899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.+.
T Consensus       154 ~~~~~  158 (321)
T 3vps_A          154 AGAHQ  158 (321)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99875

>1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2

Probab=99.88  E-value=5.8e-22  Score=176.16  Aligned_cols=141  Identities=18%  Similarity=0.232  Sum_probs=115.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc--CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~v  125 (202)
                      .++|+|+||||+|+||++++++|+++|++|++++|+......      .....+++++.+|+.|++++.++++  ++|+|
T Consensus         9 ~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~D~V   88 (699)
T 1z45_A            9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSV   88 (699)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchHHHHHHHhhccCCceEEEEcCCCCHHHHHHHHHhCCCCEE
Confidence            356899999999999999999999999999999987543211      0113578899999999999999998  89999


Q ss_pred             EEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcCCcchHHHHH
Q 028890          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYLLQGYYEGKV  184 (202)
Q Consensus       126 i~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~--------------~~~~~~Y~~sK~  184 (202)
                      |||||...      .+...+++|+.++.+++++|++.++++||++|| .+|+..              ..+.+.|+.+|.
T Consensus        89 ih~A~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~iV~~SS~~vyg~~~~~~~~~~~~E~~~~~p~~~Y~~sK~  168 (699)
T 1z45_A           89 IHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKY  168 (699)
T ss_dssp             EECCSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHH
T ss_pred             EECCcccCcCccccCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECcHHHhCCCccccccCCccccCCCCCCChHHHHHH
Confidence            99999754      234578899999999999999999999999999 666532              123468999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      ++|++++.+.
T Consensus       169 ~~E~~~~~~~  178 (699)
T 1z45_A          169 AIENILNDLY  178 (699)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998763

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.88  E-value=3.2e-22  Score=158.67  Aligned_cols=143  Identities=15%  Similarity=0.126  Sum_probs=112.1

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ...++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++     
T Consensus        17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            34567899999999999999999999999999999997543111      1113568889999999998888776     


Q ss_pred             --CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccc-cCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAAD-FGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~-~~~~~~~~~~Y~~sK  183 (202)
                        ++|++|||||....          +...+++|+.++.++.+++.    +.+.++||++||.. ...+..+...|+.+|
T Consensus        97 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK  176 (267)
T 1vl8_A           97 FGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASK  176 (267)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCcchhccCCCCChhHHHHH
Confidence              68999999996431          23467899999998887763    45668999999943 333344567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       177 ~a~~~~~~~la  187 (267)
T 1vl8_A          177 GGVASLTKALA  187 (267)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=99.88  E-value=4.3e-22  Score=157.95  Aligned_cols=140  Identities=14%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.... ......++.++.+|++|+++++++++       ++|++|
T Consensus        14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~lv   92 (266)
T 3p19_A           14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERL-KALNLPNTLCAQVDVTDKYTFDTAITRAEKIYGPADAIV   92 (266)
T ss_dssp             -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHH-HTTCCTTEEEEECCTTCHHHHHHHHHHHHHHHCSEEEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHhhcCCceEEEecCCCHHHHHHHHHHHHHHCCCCCEEE
Confidence            4578999999999999999999999999999999975432 22223478899999999999888776       689999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          .+...+++|+.++.++.+++    ++.+.++||++||...-.+......|+.+|.+.+.+.+.
T Consensus        93 nnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK~a~~~~~~~  172 (266)
T 3p19_A           93 NNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCGTIINISSIAGKKTFPDHAAYCGTKFAVHAISEN  172 (266)
T ss_dssp             ECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhCCCCCCCchHHHHHHHHHHHHHH
Confidence            9999643          12356889999999866665    456778999999943223344567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       173 la  174 (266)
T 3p19_A          173 VR  174 (266)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii}

Probab=99.88  E-value=4.5e-22  Score=157.33  Aligned_cols=125  Identities=19%  Similarity=0.161  Sum_probs=105.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC--ccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~~~~-  133 (202)
                      |+|+||||+|+||++++++|+ +|++|++++|++...      .+   +.+|+.|++++.+++++  +|+||||||... 
T Consensus         1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~~~~------~~---~~~Dl~~~~~~~~~~~~~~~d~vi~~a~~~~~   70 (273)
T 2ggs_A            1 MRTLITGASGQLGIELSRLLS-ERHEVIKVYNSSEIQ------GG---YKLDLTDFPRLEDFIIKKRPDVIINAAAMTDV   70 (273)
T ss_dssp             CCEEEETTTSHHHHHHHHHHT-TTSCEEEEESSSCCT------TC---EECCTTSHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CEEEEECCCChhHHHHHHHHh-cCCeEEEecCCCcCC------CC---ceeccCCHHHHHHHHHhcCCCEEEECCcccCh
Confidence            479999999999999999999 589999999986431      22   88999999999999886  999999999754 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------cCCcchHHHHHHHHHHHHH
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------YLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------~~~~~Y~~sK~~~E~~~~~  192 (202)
                           ++...+++|+.++.++++++++.+. +||++|| .+|+...         .+.+.|+.+|.++|++++.
T Consensus        71 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~iv~~SS~~~~~~~~~~~~e~~~~~~~~~Y~~sK~~~e~~~~~  143 (273)
T 2ggs_A           71 DKCEIEKEKAYKINAEAVRHIVRAGKVIDS-YIVHISTDYVFDGEKGNYKEEDIPNPINYYGLSKLLGETFALQ  143 (273)
T ss_dssp             HHHHHCHHHHHHHHTHHHHHHHHHHHHTTC-EEEEEEEGGGSCSSSCSBCTTSCCCCSSHHHHHHHHHHHHHCC
T ss_pred             hhhhhCHHHHHHHhHHHHHHHHHHHHHhCC-eEEEEecceeEcCCCCCcCCCCCCCCCCHHHHHHHHHHHHHhC
Confidence                 3456788999999999999998886 9999999 5665432         2357899999999999875

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=99.88  E-value=4.3e-22  Score=156.93  Aligned_cols=141  Identities=18%  Similarity=0.149  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|++++.++++       ++|+
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   84 (257)
T 3tpc_A            5 LKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVHG   84 (257)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999998754221  1223578899999999999888876       7999


Q ss_pred             eEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCcchH
Q 028890          125 VISCVGGFG--------------SNSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQGYY  180 (202)
Q Consensus       125 vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~----------~~~~~v~~SS~~~~~~~~~~~~Y~  180 (202)
                      +|||||...              .+...+++|+.++.++++++...          +.++||++||...-.+..+...|+
T Consensus        85 lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~  164 (257)
T 3tpc_A           85 LVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERGVIVNTASIAAFDGQIGQAAYA  164 (257)
T ss_dssp             EEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHHHH
T ss_pred             EEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCeEEEEEechhhccCCCCCcchH
Confidence            999999642              12346789999999999888653          346899999942223344567899


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .+|.+.+.+.+.++
T Consensus       165 asKaa~~~~~~~la  178 (257)
T 3tpc_A          165 ASKGGVAALTLPAA  178 (257)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=99.88  E-value=2.2e-22  Score=157.73  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=111.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++       +
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   82 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEIKAKGVDSFAIQANVADADEVKAMIKEVVSQFGS   82 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999999998876432111      1124578899999999999888776       7


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||...          ++...+++|+.++.++++++    ++.+.++||++||...-.+.++...|+.+|.+.+
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~  162 (246)
T 3osu_A           83 LDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSGAIINLSSVVGAVGNPGQANYVATKAGVI  162 (246)
T ss_dssp             CCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHH
Confidence            899999999643          12457899999999999887    5566679999999322223445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       163 ~~~~~la  169 (246)
T 3osu_A          163 GLTKSAA  169 (246)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=99.88  E-value=1e-21  Score=155.95  Aligned_cols=138  Identities=14%  Similarity=0.118  Sum_probs=110.7

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      ...++|+++||||+|+||++++++|+++|++|++++|+....     ...+..+.+|++|++++.++++       ++|+
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   84 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD-----VNVSDHFKIDVTNEEEVKEAVEKTTKKYGRIDI   84 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C-----TTSSEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc-----cCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            345789999999999999999999999999999999986543     2367889999999999888776       6899


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          +...+++|+.++.++.+++.    +.+.++||++||.....+......|+.||.+.+.+.
T Consensus        85 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~  164 (269)
T 3vtz_A           85 LVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHGSIINIASVQSYAATKNAAAYVTSKHALLGLT  164 (269)
T ss_dssp             EEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHHHHHH
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCChhHHHHHHHHHHHH
Confidence            9999996431          23467899999998888764    456679999999432233445678999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       165 ~~la  168 (269)
T 3vtz_A          165 RSVA  168 (269)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli}

Probab=99.88  E-value=1.8e-21  Score=152.84  Aligned_cols=136  Identities=10%  Similarity=0.094  Sum_probs=110.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+....     ..++.++.+|++|++++.++++       ++|++|
T Consensus         5 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~-----~~~~~~~~~D~~d~~~~~~~~~~~~~~~g~id~lv   79 (250)
T 2fwm_X            5 FSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQE-----QYPFATEVMDVADAAQVAQVCQRLLAETERLDALV   79 (250)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCSS-----CCSSEEEECCTTCHHHHHHHHHHHHHHCSCCCEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhhh-----cCCceEEEcCCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3568999999999999999999999999999999986531     1237889999999999988876       689999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          ++...+++|+.++.++++++    ++.+.++||++||.....+..+...|+.+|.+.+.+.+.
T Consensus        80 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  159 (250)
T 2fwm_X           80 NAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALS  159 (250)
T ss_dssp             ECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCCchHHHHHHHHHHHHHH
Confidence            9999643          13457789999999888877    455678999999943223344567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       160 la  161 (250)
T 2fwm_X          160 VG  161 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A

Probab=99.88  E-value=1.5e-21  Score=154.53  Aligned_cols=134  Identities=16%  Similarity=0.141  Sum_probs=109.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~  127 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+...      ..++.++.+|++|+++++++++       ++|++||
T Consensus         7 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~------~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~iD~lv~   80 (264)
T 2dtx_A            7 RDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG------EAKYDHIECDVTNPDQVKASIDHIFKEYGSISVLVN   80 (264)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC------SCSSEEEECCTTCHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc------CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            56899999999999999999999999999999997654      3578899999999999888776       6999999


Q ss_pred             ccccCC----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          128 CVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       128 ~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |||...          .+...+++|+.++.++++++..    .+.++||++||.....+..+...|+.+|.+.+.+.+.+
T Consensus        81 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~l  160 (264)
T 2dtx_A           81 NAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDPSIVNISSVQASIITKNASAYVTSKHAVIGLTKSI  160 (264)
T ss_dssp             CCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECCchhccCCCCchhHHHHHHHHHHHHHHH
Confidence            999643          1345778999999988887753    45679999999422233445678999999999998876


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      .
T Consensus       161 a  161 (264)
T 2dtx_A          161 A  161 (264)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=99.87  E-value=1.1e-21  Score=156.53  Aligned_cols=142  Identities=18%  Similarity=0.172  Sum_probs=112.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----------------cccCCCceeEEEccCCCHhhH
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------------RDSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----------------~~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.....                 ......++.++.+|++|++++
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALVEKTGRRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            356789999999999999999999999999999999743210                 011245789999999999998


Q ss_pred             HHHhc-------CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCc
Q 028890          116 KEALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANY  174 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~  174 (202)
                      +++++       ++|++|||||...          .+...+++|+.++.++.+++    ++.+.++||++||.....+..
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~  166 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYGRIVTVSSMLGHSANF  166 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCT
T ss_pred             HHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhcCCCC
Confidence            88776       6899999999643          12457789999999988885    445667999999943333445


Q ss_pred             CCcchHHHHHHHHHHHHHhc
Q 028890          175 LLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       175 ~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +...|+.+|.+.+.+.+.++
T Consensus       167 ~~~~Y~asK~a~~~~~~~la  186 (281)
T 3s55_A          167 AQASYVSSKWGVIGLTKCAA  186 (281)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHH
Confidence            56789999999999988764

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=99.87  E-value=3.8e-22  Score=156.45  Aligned_cols=141  Identities=13%  Similarity=0.155  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       +
T Consensus         9 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   88 (255)
T 1fmc_A            9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence            457899999999999999999999999999999997543110     1123578899999999999988876       7


Q ss_pred             ccEeEEccccCCC---------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          122 VTAVISCVGGFGS---------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       122 ~d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|+||||||....         +...+++|+.++.++++++.    +.+.++||++||.....+..+...|+.+|.+.|.
T Consensus        89 ~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~  168 (255)
T 1fmc_A           89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASH  168 (255)
T ss_dssp             CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhcCCCCCCcccHHHHHHHHH
Confidence            9999999996432         23567899999998888774    4567899999994333344556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       169 ~~~~~~  174 (255)
T 1fmc_A          169 LVRNMA  174 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP}

Probab=99.87  E-value=2.1e-22  Score=157.62  Aligned_cols=131  Identities=13%  Similarity=0.055  Sum_probs=106.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc----CccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD----GVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~----~~d~vi~~a~~  131 (202)
                      ||+++||||+|+||++++++|+++|++|++++|+..+...        .+.+|+.|++++.++++    ++|+||||||.
T Consensus         1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~~~--------~~~~D~~~~~~~~~~~~~~~~~~d~vi~~Ag~   72 (255)
T 2dkn_A            1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADIEA--------DLSTPGGRETAVAAVLDRCGGVLDGLVCCAGV   72 (255)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC--------CTTSHHHHHHHHHHHHHHHTTCCSEEEECCCC
T ss_pred             CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHccc--------cccCCcccHHHHHHHHHHcCCCccEEEECCCC
Confidence            4689999999999999999999999999999998654211        16789999999988886    79999999996


Q ss_pred             CC---CCccchhhhHHHHHHHHHHHHHc----CCCEEEEEec-cccCcC-------------------------CcCCcc
Q 028890          132 FG---SNSYMYKINGTANINAIRAASEK----GVKRFVYISA-ADFGVA-------------------------NYLLQG  178 (202)
Q Consensus       132 ~~---~~~~~~~~n~~~~~~~~~~~~~~----~~~~~v~~SS-~~~~~~-------------------------~~~~~~  178 (202)
                      ..   ++...+++|+.++.++++++.+.    +.++||++|| ..++..                         ..+...
T Consensus        73 ~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (255)
T 2dkn_A           73 GVTAANSGLVVAVNYFGVSALLDGLAEALSRGQQPAAVIVGSIAATQPGAAELPMVEAMLAGDEARAIELAEQQGQTHLA  152 (255)
T ss_dssp             CTTSSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSTTGGGCHHHHHHHHTCHHHHHHHHHHHCCHHHH
T ss_pred             CCcchhHHHHHHHHhHHHHHHHHHHHHHhhhcCCceEEEEeccccccccccccchhhhhcccchhhhhhhccccCCcchh
Confidence            54   34668899999999999987653    5689999999 555432                         134567


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.+.|.+++.+.
T Consensus       153 Y~~sK~a~~~~~~~~~  168 (255)
T 2dkn_A          153 YAGSKYAVTCLARRNV  168 (255)
T ss_dssp             HHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999998764

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=99.87  E-value=3.7e-22  Score=157.51  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=111.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|++++.++++       ++|+
T Consensus         6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   85 (259)
T 4e6p_A            6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLDI   85 (259)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999997543111  1224578899999999999888876       7999


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||||...          .+...+++|+.++.++++++..    .+ .++||++||...-.+......|+.+|.+.+.+
T Consensus        86 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  165 (259)
T 4e6p_A           86 LVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAGRRGEALVAIYCATKAAVISL  165 (259)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred             EEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhhccCCCCChHHHHHHHHHHHH
Confidence            999999643          1245678999999998888743    23 45999999943223344567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       166 ~~~la  170 (259)
T 4e6p_A          166 TQSAG  170 (259)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2

Probab=99.87  E-value=3e-22  Score=160.99  Aligned_cols=134  Identities=20%  Similarity=0.249  Sum_probs=109.3

Q ss_pred             eEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC-----ccEeEEcccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG-----VTAVISCVGG  131 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~-----~d~vi~~a~~  131 (202)
                      +|+||||+||||++++++|+++| ++|++++|......... ..++. +.+|+.|++.+.+++++     +|+|||+|+.
T Consensus         1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~~~-~~~~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~a~~   78 (310)
T 1eq2_A            1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVN-LVDLN-IADYMDKEDFLIQIMAGEEFGDVEAIFHEGAC   78 (310)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHH-HHTSC-CSEEEEHHHHHHHHHTTCCCSSCCEEEECCSC
T ss_pred             CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCchhhh-cCcce-eccccccHHHHHHHHhccccCCCcEEEECccc
Confidence            58999999999999999999999 99999998765421100 01233 77899999999999875     9999999997


Q ss_pred             CC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHhc
Q 028890          132 FG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       132 ~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..    ++...+++|+.++.+++++|++.++ +|||+|| .+|+...          .+.++|+.+|.++|.+++.+.
T Consensus        79 ~~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~-~~v~~SS~~v~g~~~~~~~~E~~~~~p~~~Y~~sK~~~e~~~~~~~  155 (310)
T 1eq2_A           79 SSTTEWDGKYMMDNNYQYSKELLHYCLEREI-PFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQIL  155 (310)
T ss_dssp             CCTTCCCHHHHHHHTHHHHHHHHHHHHHHTC-CEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHG
T ss_pred             ccCcccCHHHHHHHHHHHHHHHHHHHHHcCC-eEEEEeeHHHhCCCCCCCCCCCCCCCCCChhHHHHHHHHHHHHHHH
Confidence            54    2345788999999999999999998 9999999 6666432          235689999999999999875

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=99.87  E-value=7.5e-22  Score=155.79  Aligned_cols=141  Identities=21%  Similarity=0.131  Sum_probs=111.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHh--------c
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL--------D  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~--------~  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|++++.+++        .
T Consensus         7 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   86 (260)
T 2ae2_A            7 LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG   86 (260)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999997543111     011347889999999999888877        4


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||...          ++...+++|+.++.++++++    ++.+.++||++||.....+..+...|+.+|.+.
T Consensus        87 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  166 (260)
T 2ae2_A           87 KLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGAM  166 (260)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCcchHHHHHHHH
Confidence            6999999999643          12346789999999998887    345667999999932222344567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       167 ~~~~~~la  174 (260)
T 2ae2_A          167 DQLTRCLA  174 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=99.87  E-value=3.1e-22  Score=158.75  Aligned_cols=143  Identities=19%  Similarity=0.140  Sum_probs=109.0

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      ...++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            34578899999999999999999999999999999987543111  1224578999999999999888776       68


Q ss_pred             cEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||||...          ++...+++|+.++.++.+++    ++.+.++||++||...-.+..+...|+.+|.+.+.
T Consensus       103 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~  182 (266)
T 3grp_A          103 DILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYGRIINITSIVGVVGNPGQTNYCAAKAGLIG  182 (266)
T ss_dssp             CEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCC-------CHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEECCHHHcCCCCCchhHHHHHHHHHH
Confidence            99999999643          23457789999977666655    45566799999994322334456789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       183 ~~~~la  188 (266)
T 3grp_A          183 FSKALA  188 (266)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888764

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=99.87  E-value=5.8e-22  Score=155.28  Aligned_cols=143  Identities=18%  Similarity=0.105  Sum_probs=111.6

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc---CccEeE
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD---GVTAVI  126 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi  126 (202)
                      ...++++++||||+|+||++++++|+++|++|++++|+.....  ......++.++.+|+.|.+++.++++   ++|++|
T Consensus        10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li   89 (249)
T 3f9i_A           10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDILV   89 (249)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEEE
T ss_pred             ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            3467899999999999999999999999999999999754311  11223578999999999999998887   689999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          ++...+++|+.++.++.+++    ++.+.++||++||...-.+..+...|+.+|.+.+.+++.
T Consensus        90 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  169 (249)
T 3f9i_A           90 CNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYGRIINISSIVGIAGNPGQANYCASKAGLIGMTKS  169 (249)
T ss_dssp             ECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCC--CCSCSHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEccHHhccCCCCCchhHHHHHHHHHHHHH
Confidence            9999543          23567899999999887776    345567999999943223345567899999999998887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       170 la  171 (249)
T 3f9i_A          170 LS  171 (249)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=99.87  E-value=1e-21  Score=160.00  Aligned_cols=140  Identities=18%  Similarity=0.164  Sum_probs=111.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----------ccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----------DSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----------~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+......          .....++.++.+|++|++++.++++    
T Consensus         4 ~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~   83 (324)
T 3u9l_A            4 SKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQIIG   83 (324)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999987422100          1123578999999999999988887    


Q ss_pred             ---CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcchHHH
Q 028890          121 ---GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 ---~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~s  182 (202)
                         ++|++|||||...          ++...+++|+.|+.++++++    ++.+.+++|++|| ..+.........|+.|
T Consensus        84 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g~iV~isS~~~~~~~~~~~~~Y~as  163 (324)
T 3u9l_A           84 EDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHGLLIWISSSSSAGGTPPYLAPYFAA  163 (324)
T ss_dssp             HHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCCSSCHHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEecchhccCCCCcchhHHHH
Confidence               7999999999542          12456799999999998887    5667789999999 4443344456789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.|.+.+.+.
T Consensus       164 Kaa~~~~~~~la  175 (324)
T 3u9l_A          164 KAAMDAIAVQYA  175 (324)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=99.87  E-value=9.2e-22  Score=154.80  Aligned_cols=141  Identities=16%  Similarity=0.194  Sum_probs=112.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|++++.++++      ++
T Consensus         5 ~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i   84 (252)
T 3h7a_A            5 PRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL   84 (252)
T ss_dssp             CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence            467899999999999999999999999999999998654211     1124578999999999999988886      68


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||||....          +...+++|+.++.++.+++    ++.+.++||++||.....+......|+.||.+.+.
T Consensus        85 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~  164 (252)
T 3h7a_A           85 EVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQGKIFFTGATASLRGGSGFAAFASAKFGLRA  164 (252)
T ss_dssp             EEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTCCCTTCHHHHHHHHHHHH
T ss_pred             eEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHHcCCCCCCccHHHHHHHHHH
Confidence            999999996431          2456889999999887776    44566799999994333344556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       165 l~~~la  170 (252)
T 3h7a_A          165 VAQSMA  170 (252)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=99.87  E-value=4.8e-22  Score=159.52  Aligned_cols=136  Identities=18%  Similarity=0.185  Sum_probs=110.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcc-cccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      +|+|+||||+|+||++++++|+++| ++|++++|++.+.. ......+++++.+|+.|++++.++++++|+|||+++...
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~   84 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTNYWE   84 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCHHH
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCCCCc
Confidence            5799999999999999999999998 99999999875521 111235789999999999999999999999999998643


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCcC-CcCCcchHHHHHHHHHHHHHh
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGVA-NYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~-~~~~~-~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      .+  ..+.|+.++.+++++|++.++++||++|+. .++.. ..+..+|+.+|..+|++++.+
T Consensus        85 ~~--~~~~~~~~~~~~~~aa~~~gv~~iv~~S~~~~~~~~~~~~~~~y~~sK~~~e~~~~~~  144 (299)
T 2wm3_A           85 SC--SQEQEVKQGKLLADLARRLGLHYVVYSGLENIKKLTAGRLAAAHFDGKGEVEEYFRDI  144 (299)
T ss_dssp             HT--CHHHHHHHHHHHHHHHHHHTCSEEEECCCCCHHHHTTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cc--cchHHHHHHHHHHHHHHHcCCCEEEEEcCccccccCCCcccCchhhHHHHHHHHHHHC
Confidence            21  345678899999999999999999997773 33322 223578999999999999874

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=99.87  E-value=1.2e-21  Score=153.66  Aligned_cols=141  Identities=11%  Similarity=0.108  Sum_probs=110.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC-CCccc--ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~-~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+. +....  .....++.++.+|++|+++++++++       ++|
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            3578999999999999999999999999999999986 32111  1123578899999999998887754       689


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++|||||....          +...+++|+.++.++.++    +++.+.++||++||.....+..+...|+.+|.+.+.+
T Consensus        85 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  164 (249)
T 2ew8_A           85 ILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGF  164 (249)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCchhHHHHHHHHHHH
Confidence            99999996431          234678999998887777    5566678999999932222344567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       165 ~~~la  169 (249)
T 2ew8_A          165 TRALA  169 (249)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=99.87  E-value=1.2e-21  Score=154.51  Aligned_cols=141  Identities=11%  Similarity=0.067  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         4 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   83 (257)
T 3imf_A            4 MKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGR   83 (257)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999998643111     1223578999999999999888776       6


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHH-----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA-----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~-----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||...          .+...+++|+.++.++.+++     ++.+.++||++||.....+......|+.+|.+.
T Consensus        84 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  163 (257)
T 3imf_A           84 IDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKGNIINMVATYAWDAGPGVIHSAAAKAGV  163 (257)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGGSCCTTCHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCcEEEEECchhhccCCCCcHHHHHHHHHH
Confidence            899999999532          23457899999999988887     334467999999943333445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       164 ~~l~~~la  171 (257)
T 3imf_A          164 LAMTKTLA  171 (257)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888754

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=99.87  E-value=5.4e-22  Score=154.73  Aligned_cols=140  Identities=14%  Similarity=0.066  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHHHhc---CccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a  129 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+....... ....+++++.+|++|++++.++++   ++|+|||||
T Consensus         5 ~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 1cyd_A            5 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEECC
Confidence            4678999999999999999999999999999999975431110 012357788999999999999887   479999999


Q ss_pred             ccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          130 GGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       130 ~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |....          +...+++|+.++.++++++.+    .+ .++||++|| ..+. +..+...|+.+|.+.|.+++.+
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~-~~~~~~~Y~~sK~a~~~~~~~~  163 (244)
T 1cyd_A           85 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV-TFPNLITYSSTKGAMTMLTKAM  163 (244)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-CCTTBHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEEcchhhcC-CCCCcchhHHHHHHHHHHHHHH
Confidence            95431          234678999999988887754    35 579999999 3333 3345678999999999999876


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      .
T Consensus       164 a  164 (244)
T 1cyd_A          164 A  164 (244)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=99.87  E-value=8.5e-22  Score=155.66  Aligned_cols=140  Identities=9%  Similarity=0.088  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc--C-CCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS--W-ANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~--~-~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..+...   ..  . ..++.++.+|++|++++.++++       
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (263)
T 3ai3_A            5 ISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSLKEKFGVRVLEVAVDVATPEGVDAVVESVRSSFG   84 (263)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999999999999999997543111   00  0 3578899999999999888876       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEec-cccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISA-ADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|++|||||...          .+...+++|+.++.++++++.    +.+.++||++|| ..+. +..+...|+.+|.+
T Consensus        85 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-~~~~~~~Y~~sK~a  163 (263)
T 3ai3_A           85 GADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGGAIIHNASICAVQ-PLWYEPIYNVTKAA  163 (263)
T ss_dssp             SCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-CCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcC-CCCCcchHHHHHHH
Confidence            7999999999643          124567899999998887763    456689999999 3333 33456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       164 ~~~~~~~la  172 (263)
T 3ai3_A          164 LMMFSKTLA  172 (263)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=99.87  E-value=6.2e-22  Score=157.91  Aligned_cols=142  Identities=11%  Similarity=0.051  Sum_probs=112.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.....  ......++.++.+|++|+++++++++       ++|
T Consensus        24 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  103 (277)
T 4dqx_A           24 DLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRVD  103 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            356789999999999999999999999999999999754311  11124578999999999999888776       689


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++|||||...          .+...+++|+.++.++.+++.    +.+.++||++||.....+..+...|+.||.+.+.+
T Consensus       104 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l  183 (277)
T 4dqx_A          104 VLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGGSIINTTSYTATSAIADRTAYVASKGAISSL  183 (277)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred             EEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCcEEEEECchhhCcCCCCChhHHHHHHHHHHH
Confidence            9999999642          124567899999998888774    34556999999943333445567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       184 ~~~la  188 (277)
T 4dqx_A          184 TRAMA  188 (277)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=99.87  E-value=7.2e-22  Score=157.81  Aligned_cols=142  Identities=16%  Similarity=0.201  Sum_probs=112.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+......       .....++.++.+|++|+++++++++     
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999999985432111       1124578999999999999888776     


Q ss_pred             --CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 --GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 --~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                        ++|++|||||...          .+...+++|+.++.++++++    ++.+.++||++||...-.+......|+.+|.
T Consensus       102 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  181 (281)
T 3v2h_A          102 FGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWGRIINIASAHGLVASPFKSAYVAAKH  181 (281)
T ss_dssp             TSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCcccccCCCCchHHHHHHH
Confidence              6899999999643          12457889999999988886    4556679999999432233445678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       182 a~~~l~~~la  191 (281)
T 3v2h_A          182 GIMGLTKTVA  191 (281)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=99.87  E-value=9.9e-22  Score=156.05  Aligned_cols=141  Identities=11%  Similarity=0.163  Sum_probs=111.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc-CCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......   .. ...++.++.+|++|++++.++++       ++
T Consensus        14 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   93 (278)
T 2bgk_A           14 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   93 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence            467899999999999999999999999999999987532110   11 12378999999999999988876       79


Q ss_pred             cEeEEccccCCC------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEec-cccCcCCcCCcchHHHHHH
Q 028890          123 TAVISCVGGFGS------------NSYMYKINGTANINAIRAASE----KGVKRFVYISA-ADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       123 d~vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~  185 (202)
                      |+||||||....            +...+++|+.++.++++++..    .+.++||++|| ..+...+.+...|+.+|.+
T Consensus        94 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~Y~~sK~a  173 (278)
T 2bgk_A           94 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHA  173 (278)
T ss_dssp             CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHHHH
T ss_pred             CEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCeEEEEeeccccCCCCCCCcchHHHHHH
Confidence            999999996431            234678999999999888765    35679999999 4454433356789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .|.+++.+.
T Consensus       174 ~~~~~~~la  182 (278)
T 2bgk_A          174 VLGLTTSLC  182 (278)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=99.87  E-value=1.4e-21  Score=152.99  Aligned_cols=141  Identities=7%  Similarity=-0.023  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh---cCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL---DGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~~~d~vi~~a~  130 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..+........++.++.+|++|++++++++   .++|++|||||
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~Ag   83 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECCc
Confidence            357899999999999999999999999999999997543211111237889999999999888764   46899999999


Q ss_pred             cCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEecc-ccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAA-DFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....          +...+++|+.++.++++++.    +.+.++||++||. .+...+.+...|+.+|.+.+.+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~~sK~a~~~~~~~la  162 (246)
T 2ag5_A           84 FVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVA  162 (246)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEechHhCcCCCCCCccHHHHHHHHHHHHHHHH
Confidence            6431          23467899999998888764    4566799999993 333322256789999999999988764

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=99.87  E-value=6.9e-22  Score=156.14  Aligned_cols=141  Identities=19%  Similarity=0.227  Sum_probs=109.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|++++.++++       ++|+
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   84 (260)
T 1nff_A            5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLHV   84 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            457899999999999999999999999999999997543111  1112357889999999999988887       7999


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          +...+++|+.++.++.++    +++.+.++||++||...-.+..+...|+.+|.+.+.+.
T Consensus        85 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  164 (260)
T 1nff_A           85 LVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLT  164 (260)
T ss_dssp             EEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEeehhhcCCCCCchhHHHHHHHHHHHH
Confidence            9999996431          245778999999766555    45566789999999322223344578999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       165 ~~la  168 (260)
T 1nff_A          165 KSTA  168 (260)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=99.87  E-value=9.1e-22  Score=154.90  Aligned_cols=141  Identities=16%  Similarity=0.182  Sum_probs=109.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|++|++++.++++       ++|+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            357899999999999999999999999999999997543111  1113468899999999999888876       7999


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHH----HHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINA----IRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~----~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          +...+++|+.++..+    ++.+++.+.++||++||...-.+..+...|+.+|.+.+.+.
T Consensus        83 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~  162 (254)
T 1hdc_A           83 LVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLS  162 (254)
T ss_dssp             EEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhccCCCCchhHHHHHHHHHHHH
Confidence            9999996431          245678999999854    45556667789999999322223345678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       163 ~~la  166 (254)
T 1hdc_A          163 KLAA  166 (254)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=99.87  E-value=1e-21  Score=154.63  Aligned_cols=140  Identities=14%  Similarity=0.113  Sum_probs=109.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+......   .....++.++.+|++|++++.++++       ++|+
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   82 (255)
T 2q2v_A            3 KGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPAPALAEIARHGVKAVHHPADLSDVAQIEALFALAEREFGGVDI   82 (255)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTSCCEEEECCCTTSHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            56899999999999999999999999999999998652111   1113468889999999999998887       7999


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          +...+++|+.++.++.+++    ++.+.++||++||...-.+......|+.+|.+.+.+.
T Consensus        83 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  162 (255)
T 2q2v_A           83 LVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWGRIINIASVHGLVGSTGKAAYVAAKHGVVGLT  162 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcCchhccCCCCchhHHHHHHHHHHHH
Confidence            9999996431          2456789999887665554    5667789999999322223344678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       163 ~~la  166 (255)
T 2q2v_A          163 KVVG  166 (255)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=99.87  E-value=1.2e-21  Score=154.43  Aligned_cols=142  Identities=15%  Similarity=0.149  Sum_probs=113.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   88 (256)
T 3gaf_A            9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFG   88 (256)
T ss_dssp             CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3577899999999999999999999999999999997543111     1124678999999999999888776       


Q ss_pred             CccEeEEccccCCC---------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          121 GVTAVISCVGGFGS---------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 ~~d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|++|||||....         +...+++|+.++.++.+++    ++.+.++||++||.....+..+...|+.+|.+.+
T Consensus        89 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  168 (256)
T 3gaf_A           89 KITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGGAILNISSMAGENTNVRMASYGSSKAAVN  168 (256)
T ss_dssp             CCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTCCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcCHHHcCCCCCchHHHHHHHHHH
Confidence            68999999996432         2457889999999988886    3455679999999433334455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       169 ~~~~~la  175 (256)
T 3gaf_A          169 HLTRNIA  175 (256)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=99.87  E-value=1e-21  Score=156.70  Aligned_cols=142  Identities=16%  Similarity=0.151  Sum_probs=110.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      +.++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            3467899999999999999999999999999999997543111     1124578999999999998888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH------cCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE------KGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||....          +...+++|+.++.++.+++..      .+.++||++||.....+......|+.+|.
T Consensus       101 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKa  180 (279)
T 3sju_A          101 PIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWGRIVNIASTGGKQGVMYAAPYTASKH  180 (279)
T ss_dssp             SCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCcEEEEECChhhccCCCCChhHHHHHH
Confidence            68999999996431          245678999999999887644      45679999999433334455678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       181 a~~~l~~~la  190 (279)
T 3sju_A          181 GVVGFTKSVG  190 (279)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=99.87  E-value=1.7e-21  Score=153.67  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=111.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|+
T Consensus        10 ~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   89 (265)
T 2o23_A           10 VKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVDV   89 (265)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            467899999999999999999999999999999998654211  1113578999999999999988887       7999


Q ss_pred             eEEccccCCC----------------CccchhhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCcc
Q 028890          125 VISCVGGFGS----------------NSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQG  178 (202)
Q Consensus       125 vi~~a~~~~~----------------~~~~~~~n~~~~~~~~~~~~~~----------~~~~~v~~SS~~~~~~~~~~~~  178 (202)
                      ||||||....                +...+++|+.++.++++++.+.          +.++||++||.....+..+...
T Consensus        90 li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~  169 (265)
T 2o23_A           90 AVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQAA  169 (265)
T ss_dssp             EEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCHH
T ss_pred             EEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCCCcEEEEeCChhhcCCCCCCch
Confidence            9999996421                2346789999999999888654          5679999999322223345678


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.+.+.+++.+.
T Consensus       170 Y~~sK~a~~~~~~~la  185 (265)
T 2o23_A          170 YSASKGGIVGMTLPIA  185 (265)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999998888753

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.87  E-value=7.1e-22  Score=157.24  Aligned_cols=140  Identities=14%  Similarity=0.046  Sum_probs=108.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..+...        .....++.++.+|++|++++.++++     
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~   83 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   83 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccCCCceeEEecccCCHHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999997543110        1112468899999999999988887     


Q ss_pred             --CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEecccc-CcCCcCCcch
Q 028890          121 --GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADF-GVANYLLQGY  179 (202)
Q Consensus       121 --~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~-~~~~~~~~~Y  179 (202)
                        ++|++|||||....              +...+++|+.++.++++++..    .+ ++||++||... -.+..+...|
T Consensus        84 ~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~Y  162 (278)
T 1spx_A           84 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPDFPYY  162 (278)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTTSHHH
T ss_pred             cCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEecccccccCCCCccHH
Confidence              79999999996421              234678999999988888754    35 79999999422 2233455789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.+.+.+.++
T Consensus       163 ~~sK~a~~~~~~~la  177 (278)
T 1spx_A          163 SIAKAAIDQYTRNTA  177 (278)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988754

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=99.87  E-value=1.5e-21  Score=154.60  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=109.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c--c--CCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--S--WANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~--~--~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......   .  .  ...++.++.+|++|+++++++++      
T Consensus        11 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   90 (267)
T 1iy8_A           11 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   90 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            467899999999999999999999999999999997543111   0  0  03578899999999999888776      


Q ss_pred             -CccEeEEccccCCC-----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||....           +...+++|+.++..+.++    +++.+.++||++||...-.+..+...|+.+|.
T Consensus        91 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  170 (267)
T 1iy8_A           91 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKH  170 (267)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHH
T ss_pred             CCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhccCCCCCccHHHHHH
Confidence             68999999996432           235678899988865554    45566789999999422223345678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       171 a~~~~~~~la  180 (267)
T 1iy8_A          171 GVVGLTRNSA  180 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988753

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=99.87  E-value=1.1e-21  Score=156.00  Aligned_cols=125  Identities=17%  Similarity=0.186  Sum_probs=101.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~  135 (202)
                      +|+||||+|+||++++++|+++  |++|++++|++.+.. .....+++++.+|+.|++++.++++++|+|||+|+..   
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~-~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~~---   76 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQ-ALAAQGITVRQADYGDEAALTSALQGVEKLLLISSSE---   76 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCH-HHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC------
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhh-hhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCCCC---
Confidence            5899999999999999999999  999999999865421 1122578899999999999999999999999999863   


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          136 SYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                         ...|+.++.+++++|++.++++||++|| .++    ....+|+.+|..+|++++.+
T Consensus        77 ---~~~~~~~~~~l~~a~~~~~~~~~v~~Ss~~~~----~~~~~y~~sK~~~e~~~~~~  128 (286)
T 2zcu_A           77 ---VGQRAPQHRNVINAAKAAGVKFIAYTSLLHAD----TSPLGLADEHIETEKMLADS  128 (286)
T ss_dssp             --------CHHHHHHHHHHHHTCCEEEEEEETTTT----TCCSTTHHHHHHHHHHHHHH
T ss_pred             ---chHHHHHHHHHHHHHHHcCCCEEEEECCCCCC----CCcchhHHHHHHHHHHHHHc
Confidence               1257889999999999999999999999 444    22358999999999999863

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=99.87  E-value=4.7e-21  Score=149.46  Aligned_cols=139  Identities=14%  Similarity=0.167  Sum_probs=112.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---CccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~  130 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+.. ......++..+.+|++|+++++++++   ++|++|||||
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAG   87 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGV-HAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAG   87 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTST-TSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-hhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCC
Confidence            4789999999999999999999999999999999987653 23345688999999999999888776   5899999999


Q ss_pred             cCC--------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFG--------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~--------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ...        +|+..+++|+.+++.+.+++.    +.+ +++|++||...-.+.+....|+.||.....+.+.++
T Consensus        88 i~~~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~~~~~~Y~asKaav~~ltr~lA  162 (242)
T 4b79_A           88 ISRDREEYDLATFERVLRLNLSAAMLASQLARPLLAQRG-GSILNIASMYSTFGSADRPAYSASKGAIVQLTRSLA  162 (242)
T ss_dssp             CCCGGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC-EEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcC-CeEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            654        245678999999987777653    334 699999994333334456789999999999988764

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=99.87  E-value=2.2e-21  Score=151.80  Aligned_cols=139  Identities=19%  Similarity=0.174  Sum_probs=108.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       ++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   81 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTHWHAYADKVLRVRADVADEGDVNAAIAATMEQFGAI   81 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            5789999999999999999999999999999997543110      1113468999999999999988876       79


Q ss_pred             cEeEEccccCCC-------------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          123 TAVISCVGGFGS-------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       123 d~vi~~a~~~~~-------------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      |+||||||....             +...+++|+.++.++.+++    ++.+.++||++||.....+..+...|+.+|.+
T Consensus        82 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a  161 (250)
T 2cfc_A           82 DVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAGVIVNIASVASLVAFPGRSAYTTSKGA  161 (250)
T ss_dssp             CEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCchhHHHHHHH
Confidence            999999996431             2346688999997666655    45577899999993222233456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .|.+++.+.
T Consensus       162 ~~~~~~~l~  170 (250)
T 2cfc_A          162 VLQLTKSVA  170 (250)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.87  E-value=1.6e-21  Score=153.67  Aligned_cols=139  Identities=15%  Similarity=0.079  Sum_probs=108.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc-CCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+. .... .... .++.+|++|+++++++++       ++|++
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~~~g~iD~l   81 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGG-AFFQVDLEDERERVRFVEEAAYALGRVDVL   81 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTC-EEEECCTTCHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhC-CEEEeeCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            357899999999999999999999999999999998654 1110 0013 789999999998887765       68999


Q ss_pred             EEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||....          +...+++|+.++.++++++.    +.+.++||++||...-.+..+...|+.+|.+.+.+.+
T Consensus        82 v~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~  161 (256)
T 2d1y_A           82 VNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTR  161 (256)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccccccCCCCCChhHHHHHHHHHHHHH
Confidence            999996431          24577899999999888764    3456799999993222233456789999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       162 ~la  164 (256)
T 2d1y_A          162 SLA  164 (256)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=99.87  E-value=2.5e-21  Score=151.25  Aligned_cols=140  Identities=13%  Similarity=0.095  Sum_probs=103.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+|+||++++++|+++|++|+++ .|+......     .....++.++.+|++|+++++++++       +
T Consensus         4 ~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   83 (247)
T 2hq1_A            4 KGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEFKAAGINVVVAKGDVKNPEDVENMVKTAMDAFGR   83 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHHHHTTCCEEEEESCTTSHHHHHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            56899999999999999999999999999999 454332110     1123578999999999999888776       7


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|+||||||...          .+...+++|+.++.++.+++.    +.+.++||++||...-.+..+...|+.+|.+.|
T Consensus        84 ~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  163 (247)
T 2hq1_A           84 IDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSGKIINITSIAGIIGNAGQANYAASKAGLI  163 (247)
T ss_dssp             CCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECC---------CHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCCcHhHHHHHHHH
Confidence            999999999642          245678899999988877764    356789999999321122344578999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       164 ~~~~~la  170 (247)
T 2hq1_A          164 GFTKSIA  170 (247)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988763

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=99.86  E-value=4.6e-22  Score=156.11  Aligned_cols=141  Identities=18%  Similarity=0.128  Sum_probs=111.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....+..++.+|++|+++++++++       ++|+
T Consensus         7 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   86 (248)
T 3op4_A            7 LEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVDI   86 (248)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999997543211  1123457889999999999888876       7899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||...          ++...+++|+.++.++.+++.    +.+.++||++||.....+..+...|+.+|.+.+.+.
T Consensus        87 lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~l~  166 (248)
T 3op4_A           87 LVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQGRIINVGSVVGTMGNAGQANYAAAKAGVIGFT  166 (248)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEEcchhhcCCCCCChHHHHHHHHHHHHH
Confidence            999999643          234578999999999888864    356679999999322233455678999999999888


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       167 ~~la  170 (248)
T 3op4_A          167 KSMA  170 (248)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=99.86  E-value=1.9e-21  Score=155.64  Aligned_cols=141  Identities=13%  Similarity=0.142  Sum_probs=112.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------------ccCCCceeEEEccCCCHhhHHHHhc-
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD-  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------------~~~~~~~~~~~~D~~~~~~~~~~~~-  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+..+...            .....++.++.+|++|+++++++++ 
T Consensus         7 l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   86 (285)
T 3sc4_A            7 LRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKLPGTIYTAAKEIEEAGGQALPIVGDIRDGDAVAAAVAK   86 (285)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHHTSEEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhhhHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999998753111            1123578999999999999888776 


Q ss_pred             ------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc----CCCEEEEEecc-ccCcCCcCCcch
Q 028890          121 ------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK----GVKRFVYISAA-DFGVANYLLQGY  179 (202)
Q Consensus       121 ------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~----~~~~~v~~SS~-~~~~~~~~~~~Y  179 (202)
                            ++|++|||||....          +...+++|+.++.++.+++...    +.++||++||. .+.........|
T Consensus        87 ~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~Y  166 (285)
T 3sc4_A           87 TVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNPHILTLSPPIRLEPKWLRPTPY  166 (285)
T ss_dssp             HHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSCEEEECCCCCCCSGGGSCSHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhccCCCCCCchH
Confidence                  78999999996431          2456789999999999988543    55799999993 333222455789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.||.+.+.+.+.++
T Consensus       167 ~asKaal~~~~~~la  181 (285)
T 3sc4_A          167 MMAKYGMTLCALGIA  181 (285)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=99.86  E-value=1.2e-21  Score=154.71  Aligned_cols=141  Identities=16%  Similarity=0.122  Sum_probs=106.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHh--------c
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL--------D  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~--------~  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|+.|++++.+++        .
T Consensus        12 l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   91 (266)
T 1xq1_A           12 LKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG   91 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999999999997543111     011346889999999999888877        4


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|+||||||....          +...+++|+.++.++++++    ++.+.++||++||...-.+..+...|+.+|.+.
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  171 (266)
T 1xq1_A           92 KLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGAL  171 (266)
T ss_dssp             CCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEccchhccCCCCCchHHHHHHHH
Confidence            68999999996431          2346789999999998887    456778999999932222334457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+++.+.
T Consensus       172 ~~~~~~la  179 (266)
T 1xq1_A          172 NQLARNLA  179 (266)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988753

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=99.86  E-value=2e-21  Score=151.57  Aligned_cols=141  Identities=15%  Similarity=0.039  Sum_probs=110.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHHHhc---CccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a  129 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.++.... ....+.+++.+|++|++++.++++   ++|+|||||
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~A   84 (244)
T 3d3w_A            5 LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNA   84 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEECC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEECC
Confidence            4678999999999999999999999999999999975431110 011356788999999999999886   489999999


Q ss_pred             ccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          130 GGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       130 ~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      |....          +...+++|+.++.++.+++.+    .+ .++||++||.....+..+...|+.+|.+.|.+++.+.
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~la  164 (244)
T 3d3w_A           85 AVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVMA  164 (244)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEeCchhhccCCCCCchHHHHHHHHHHHHHHHH
Confidence            96431          235778999999988887754    35 5799999994322334456789999999999998764

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=99.86  E-value=4.6e-21  Score=157.73  Aligned_cols=132  Identities=17%  Similarity=0.150  Sum_probs=107.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEcc-CCCHhhHHHHhcCccEeEEccccC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGN-LLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D-~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +|+|+||||+|+||++++++|+++|++|++++|+.....  ......+++++.+| +.|++++.++++++|+||||++..
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~~   84 (352)
T 1xgk_A            5 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ   84 (352)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCCC
Confidence            578999999999999999999999999999999876531  11112478999999 999999999999999999999764


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccc-cCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          133 GSNSYMYKINGTANINAIRAASEKG-VKRFVYISAAD-FGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~-~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      .     ...|..+ .+++++|++.+ +++|||+||.. ......+..+|+.+|..+|++++.+
T Consensus        85 ~-----~~~~~~~-~~l~~aa~~~g~v~~~V~~SS~~~~~~~~~~~~~y~~sK~~~E~~~~~~  141 (352)
T 1xgk_A           85 A-----GDEIAIG-KDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQL  141 (352)
T ss_dssp             T-----SCHHHHH-HHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTS
T ss_pred             C-----cHHHHHH-HHHHHHHHHcCCccEEEEeCCccccccCCCCCccHHHHHHHHHHHHHHc
Confidence            2     2456666 89999999999 99999999942 1112234578999999999999874

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=99.86  E-value=6.4e-22  Score=155.22  Aligned_cols=141  Identities=16%  Similarity=0.129  Sum_probs=112.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|+
T Consensus         4 l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   83 (247)
T 3rwb_A            4 LAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGIDI   83 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCSE
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCCE
Confidence            467899999999999999999999999999999987643111  1124678999999999999888776       6899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHH----HHHcC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRA----ASEKG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~----~~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||||...          .+...+++|+.++.++.++    +++.+ .++||++||.....+......|+.+|.+.+.+
T Consensus        84 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~  163 (247)
T 3rwb_A           84 LVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNTFFAGTPNMAAYVAAKGGVIGF  163 (247)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHTCTTCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchhhccCCCCchhhHHHHHHHHHH
Confidence            999999643          1345789999999988887    45555 57999999943333445567899999999998


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       164 ~~~la  168 (247)
T 3rwb_A          164 TRALA  168 (247)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=99.86  E-value=2.2e-21  Score=155.15  Aligned_cols=141  Identities=15%  Similarity=0.144  Sum_probs=112.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       +
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  105 (283)
T 3v8b_A           26 QPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH  105 (283)
T ss_dssp             -CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999999999998643111     1123578899999999998888776       6


Q ss_pred             ccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccC-cCCcCCcchHHHHH
Q 028890          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFG-VANYLLQGYYEGKV  184 (202)
Q Consensus       122 ~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~-~~~~~~~~Y~~sK~  184 (202)
                      +|++|||||....           +...+++|+.++.++++++    ++.+.++||++||. .+. .+..+...|+.+|.
T Consensus       106 iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~~~Y~asKa  185 (283)
T 3v8b_A          106 LDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGGAIVVVSSINGTRTFTTPGATAYTATKA  185 (283)
T ss_dssp             CCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCSTTCHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCceEEEEcChhhccCCCCCCchHHHHHHH
Confidence            8999999996421           2456899999999988887    55666799999993 322 23455678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       186 a~~~l~~~la  195 (283)
T 3v8b_A          186 AQVAIVQQLA  195 (283)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=99.86  E-value=3.1e-21  Score=152.45  Aligned_cols=141  Identities=18%  Similarity=0.132  Sum_probs=110.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|+
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD~   89 (263)
T 3ak4_A           10 LSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFDL   89 (263)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCCE
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCCE
Confidence            457899999999999999999999999999999997543111  1112367889999999999988887       7999


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||||....          +...+++|+.++.++.+++.+    .+ .++||++||.....+.++...|+.+|.+.+.+
T Consensus        90 lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~  169 (263)
T 3ak4_A           90 LCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKGVIVNTASLAAKVGAPLLAHYSASKFAVFGW  169 (263)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCchhHHHHHHHHHHH
Confidence            9999996431          245678999999988887753    34 57999999942222334567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       170 ~~~la  174 (263)
T 3ak4_A          170 TQALA  174 (263)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=99.86  E-value=2.3e-21  Score=152.86  Aligned_cols=139  Identities=17%  Similarity=0.227  Sum_probs=109.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC--ccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS--SLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~--~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      +|+++||||+|+||++++++|+++|++|++++|+...  ...     .....++.++.+|++|+++++++++       +
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   81 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLIEAADQKAVFVGLDVTDKANFDSAIDEAAEKLGG   81 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            5799999999999999999999999999999987643  111     0113578899999999999888776       7


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCC-CEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGV-KRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~-~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||....          +...+++|+.++.++++++.+    .+. ++||++||...-.+......|+.+|.+.
T Consensus        82 iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  161 (258)
T 3a28_C           82 FDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKGKIINAASIAAIQGFPILSAYSTTKFAV  161 (258)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCCEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCcEEEEECcchhccCCCCchhHHHHHHHH
Confidence            9999999996431          235678999999988887754    466 7999999932222334567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       162 ~~~~~~la  169 (258)
T 3a28_C          162 RGLTQAAA  169 (258)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=99.86  E-value=1.4e-21  Score=154.24  Aligned_cols=140  Identities=15%  Similarity=0.145  Sum_probs=109.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC-ccc---cc--C-CCceeEEEccCCCHhhHHHHhc-------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS-SLR---DS--W-ANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~-~~~---~~--~-~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+... ...   ..  . ..++.++.+|++|+++++++++       
T Consensus         3 ~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   82 (260)
T 1x1t_A            3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQMG   82 (260)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHhccCCcEEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            56899999999999999999999999999999997643 111   00  0 3568899999999999888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||....          +...+++|+.++.++++++.    +.+.++||++||...-.+..+...|+.+|.+.
T Consensus        83 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  162 (260)
T 1x1t_A           83 RIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHGV  162 (260)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECcHHhCcCCCCCchHHHHHHHH
Confidence            68999999996431          24577899999998887763    45667999999932222334567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       163 ~~~~~~la  170 (260)
T 1x1t_A          163 VGFTKVTA  170 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=99.86  E-value=1e-21  Score=155.02  Aligned_cols=140  Identities=16%  Similarity=0.104  Sum_probs=109.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++|+++||||+|+||++++++|+++|++|+++ .|+......     .....++.++.+|++|+++++++++       +
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIEKLGVKVLVVKANVGQPAKIKEMFQQIDETFGR   82 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            56899999999999999999999999999987 665432110     1124578999999999999888776       5


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||...          .+...+++|+.++.++.+++    ++.+.++||++||...-.+..+...|+.||.+.+
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~  162 (258)
T 3oid_A           83 LDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGGHIVSISSLGSIRYLENYTTVGVSKAALE  162 (258)
T ss_dssp             CCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEEEGGGTSBCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhCCCCCCcHHHHHHHHHHH
Confidence            799999998532          12446899999999888877    4455679999999433334455688999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       163 ~l~~~la  169 (258)
T 3oid_A          163 ALTRYLA  169 (258)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=99.86  E-value=2.2e-21  Score=154.43  Aligned_cols=141  Identities=13%  Similarity=0.116  Sum_probs=109.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhcC-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALDG-------  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~-------  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++.       
T Consensus        32 l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~  111 (279)
T 3ctm_A           32 LKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHLQKTYGVHSKAYKCNISDPKSVEETISQQEKDFGT  111 (279)
T ss_dssp             CTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHHHHHHCSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999999999998654211     01135788999999999998887764       


Q ss_pred             ccEeEEccccCCC------------CccchhhhHHHH----HHHHHHHHHcCCCEEEEEeccccCcC--CcCCcchHHHH
Q 028890          122 VTAVISCVGGFGS------------NSYMYKINGTAN----INAIRAASEKGVKRFVYISAADFGVA--NYLLQGYYEGK  183 (202)
Q Consensus       122 ~d~vi~~a~~~~~------------~~~~~~~n~~~~----~~~~~~~~~~~~~~~v~~SS~~~~~~--~~~~~~Y~~sK  183 (202)
                      +|+||||||....            +...+++|+.++    ..+++.+++.+.++||++||.....+  ..+...|+.+|
T Consensus       112 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK  191 (279)
T 3ctm_A          112 IDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKGSLIITSSISGKIVNIPQLQAPYNTAK  191 (279)
T ss_dssp             CSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSCC---CCHHHHHHHH
T ss_pred             CCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEECchHhccCCCCCCcccHHHHH
Confidence            8999999996432            123677899995    46666777777889999999322222  44567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.|.+++.+.
T Consensus       192 ~a~~~~~~~la  202 (279)
T 3ctm_A          192 AACTHLAKSLA  202 (279)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.86  E-value=2.9e-21  Score=150.67  Aligned_cols=140  Identities=12%  Similarity=0.083  Sum_probs=109.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc---------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD---------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~---------~  121 (202)
                      ++++++||||+|+||++++++|+++|  ++|++++|+......  .....++.++.+|++|++++.++++         +
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~~~   81 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhccCCceEEEEeecCCHHHHHHHHHHHHHhcCCCC
Confidence            46799999999999999999999999  999999997644211  1123578999999999999888877         8


Q ss_pred             ccEeEEccccCC-C----------CccchhhhHHHHHHHHHHHHH----c------C-----CCEEEEEec-cccCcCC-
Q 028890          122 VTAVISCVGGFG-S----------NSYMYKINGTANINAIRAASE----K------G-----VKRFVYISA-ADFGVAN-  173 (202)
Q Consensus       122 ~d~vi~~a~~~~-~----------~~~~~~~n~~~~~~~~~~~~~----~------~-----~~~~v~~SS-~~~~~~~-  173 (202)
                      +|+||||||... .          +...+++|+.++.++++++..    .      +     .++||++|| ..+.... 
T Consensus        82 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~  161 (250)
T 1yo6_A           82 LSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT  161 (250)
T ss_dssp             CCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCC
T ss_pred             CcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCcccCCCcEEEEeccCccccCCcc
Confidence            999999999654 1          234678999999988887643    2      4     679999999 3332221 


Q ss_pred             -----cCCcchHHHHHHHHHHHHHhc
Q 028890          174 -----YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 -----~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           .+...|+.+|.+.+.+++.++
T Consensus       162 ~~~~~~~~~~Y~~sK~a~~~~~~~la  187 (250)
T 1yo6_A          162 SGSAQFPVLAYRMSKAAINMFGRTLA  187 (250)
T ss_dssp             STTSSSCBHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHH
Confidence                 456789999999999988764

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=99.86  E-value=2e-21  Score=152.83  Aligned_cols=142  Identities=11%  Similarity=0.038  Sum_probs=112.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.+...     ......++.++.+|++|+++++++++       
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G   83 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYS   83 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            458899999999999999999999999999999999864311     11224678999999999999888775       


Q ss_pred             CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|++|||||...           +|+..+++|+.+++.+.+++    ++++-+++|++||...-.+.+....|+.+|++
T Consensus        84 ~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~~g~~~~~~~~~Y~asKaa  163 (254)
T 4fn4_A           84 RIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKGVIVNTASIAGIRGGFAGAPYTVAKHG  163 (254)
T ss_dssp             CCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCSSSSCHHHHHHHHH
T ss_pred             CCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEechhhcCCCCCChHHHHHHHH
Confidence            5899999999532           23567899999998776665    45566799999994322334456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      ...+.+.++
T Consensus       164 l~~ltr~lA  172 (254)
T 4fn4_A          164 LIGLTRSIA  172 (254)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=99.86  E-value=2.7e-21  Score=152.51  Aligned_cols=141  Identities=16%  Similarity=0.082  Sum_probs=110.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|+.|+++++++++       +
T Consensus        12 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   91 (260)
T 2zat_A           12 LENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATLQGEGLSVTGTVCHVGKAEDRERLVAMAVNLHGG   91 (260)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            457899999999999999999999999999999997543111     1113468899999999998888776       7


Q ss_pred             ccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||...           .+...+++|+.++.++++++.    +.+.++||++||...-.+..+...|+.+|.+.
T Consensus        92 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  171 (260)
T 2zat_A           92 VDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGGSVLIVSSVGAYHPFPNLGPYNVSKTAL  171 (260)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEechhhcCCCCCchhHHHHHHHH
Confidence            999999999632           124567899999988887763    55678999999932222334567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       172 ~~~~~~la  179 (260)
T 2zat_A          172 LGLTKNLA  179 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988763

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=99.86  E-value=8.3e-22  Score=156.67  Aligned_cols=142  Identities=14%  Similarity=0.046  Sum_probs=112.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       
T Consensus        23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  102 (271)
T 4ibo_A           23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQGI  102 (271)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHCC
Confidence            3568899999999999999999999999999999987543111     1124578999999999999888876       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||...          ++...+++|+.++.++.+++.    +.+.++||++||.....+..+...|+.+|.+.
T Consensus       103 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iV~isS~~~~~~~~~~~~Y~asKaa~  182 (271)
T 4ibo_A          103 DVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYGKIVNIGSLTSELARATVAPYTVAKGGI  182 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSBCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhCCCCCCchhHHHHHHHH
Confidence            6899999999643          134578999999998877664    44667999999943333445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       183 ~~l~~~la  190 (271)
T 4ibo_A          183 KMLTRAMA  190 (271)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=99.86  E-value=3.2e-21  Score=151.83  Aligned_cols=135  Identities=22%  Similarity=0.195  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+..      ..+.++.+|++|+++++++++       ++|++|
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~------~~~~~~~~Dl~d~~~v~~~~~~~~~~~g~iD~lv   92 (253)
T 2nm0_A           19 HMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPP------EGFLAVKCDITDTEQVEQAYKEIEETHGPVEVLI   92 (253)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCC------TTSEEEECCTTSHHHHHHHHHHHHHHTCSCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhh------ccceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            4678999999999999999999999999999999975432      237889999999999888775       479999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          ++...+++|+.++.++++++.    +.+.++||++||.....+......|+.+|.+.+.+.+.
T Consensus        93 ~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~  172 (253)
T 2nm0_A           93 ANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKGRVVLISSVVGLLGSAGQANYAASKAGLVGFARS  172 (253)
T ss_dssp             EECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECchhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence            9999632          345678899999998888664    34667999999932222223456899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       173 la  174 (253)
T 2nm0_A          173 LA  174 (253)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.86  E-value=2.1e-21  Score=150.98  Aligned_cols=132  Identities=18%  Similarity=0.146  Sum_probs=106.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc------CccEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~vi~~a  129 (202)
                      +|+++||||+|+||++++++|+++|++|++++|+..       ..++.++.+|++|++++.++++      ++|++||||
T Consensus         2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~d~li~~a   74 (242)
T 1uay_A            2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-------GEDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAA   74 (242)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-------SSSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECC
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-------ccceEEEeCCCCCHHHHHHHHHHHHhhCCceEEEEcc
Confidence            579999999999999999999999999999999864       1356899999999999998887      789999999


Q ss_pred             ccCC--------------CCccchhhhHHHHHHHHHHHHHc----C------CCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          130 GGFG--------------SNSYMYKINGTANINAIRAASEK----G------VKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       130 ~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~----~------~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      |...              .+...+++|+.++.++++++.+.    +      .++||++||.....+..+...|+.+|.+
T Consensus        75 g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a  154 (242)
T 1uay_A           75 GVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGG  154 (242)
T ss_dssp             CCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred             cccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEeCChhhccCCCCCchhhHHHHH
Confidence            9643              22346789999999999988653    1      1299999993222234456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.+.
T Consensus       155 ~~~~~~~l~  163 (242)
T 1uay_A          155 VVALTLPAA  163 (242)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999887753

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=99.86  E-value=1.8e-21  Score=154.21  Aligned_cols=141  Identities=13%  Similarity=0.069  Sum_probs=110.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       +
T Consensus         2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   81 (264)
T 3tfo_A            2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEIRDAGGTALAQVLDVTDRHSVAAFAQAAVDTWGR   81 (264)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999998543111     1123578899999999999888775       6


Q ss_pred             ccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||...          .+...+++|+.++.++.+++    ++.+.++||++||...-.+......|+.+|.+.+
T Consensus        82 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~  161 (264)
T 3tfo_A           82 IDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSGQIINIGSIGALSVVPTAAVYCATKFAVR  161 (264)
T ss_dssp             CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCeEEEEEcCHHHcccCCCChhHHHHHHHHH
Confidence            899999999643          13457799999999777766    3456679999999433334455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       162 ~l~~~la  168 (264)
T 3tfo_A          162 AISDGLR  168 (264)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=99.86  E-value=1.3e-21  Score=154.50  Aligned_cols=140  Identities=13%  Similarity=0.171  Sum_probs=111.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .+++++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       +
T Consensus         6 ~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~   85 (264)
T 3i4f_A            6 FVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETYKDVEERLQFVQADVTKKEDLHKIVEEAMSHFGK   85 (264)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTGGGGGGEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             ccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            56899999999999999999999999999999887543111      1123578999999999999888876       7


Q ss_pred             ccEeEEcccc--CC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-cc-CcCCcCCcchHHHH
Q 028890          122 VTAVISCVGG--FG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DF-GVANYLLQGYYEGK  183 (202)
Q Consensus       122 ~d~vi~~a~~--~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~-~~~~~~~~~Y~~sK  183 (202)
                      +|++|||||.  ..          .+...+++|+.++.++++++    ++.+.+++|++||. .+ ..+..+...|+.+|
T Consensus        86 id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~iss~~~~~~~~~~~~~~Y~asK  165 (264)
T 3i4f_A           86 IDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFGRIINYGFQGADSAPGWIYRSAFAAAK  165 (264)
T ss_dssp             CCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTTGGGCCCCTTCHHHHHHH
T ss_pred             CCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEeechhcccCCCCCCchhHHHH
Confidence            8999999993  21          12456789999999998887    56677899999984 44 23334557899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       166 aa~~~~~~~la  176 (264)
T 3i4f_A          166 VGLVSLTKTVA  176 (264)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=99.86  E-value=3.2e-21  Score=154.01  Aligned_cols=141  Identities=16%  Similarity=0.114  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       
T Consensus        27 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g  106 (283)
T 1g0o_A           27 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG  106 (283)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999997643111      1123578899999999998877665       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEec-cccCcCCcCCcchHHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISA-ADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|++|||||....          +...+++|+.++.++++++.+.  +.++||++|| ..+.....+...|+.+|.+.+
T Consensus       107 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asK~a~~  186 (283)
T 1g0o_A          107 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIE  186 (283)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCSSCHHHHHHHHHHH
T ss_pred             CCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEechhhccCCCCCCcchHHHHHHHH
Confidence            68999999996431          2456899999999999998775  5679999999 333222233678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       187 ~~~~~la  193 (283)
T 1g0o_A          187 TFARCMA  193 (283)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=99.86  E-value=4.2e-21  Score=152.75  Aligned_cols=142  Identities=13%  Similarity=0.066  Sum_probs=111.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cccCCCceeEEEccCCCHhhHHHHhc------Cc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALD------GV  122 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~------~~  122 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.....    ......++.++.+|++|++++.++.+      ++
T Consensus        28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~g~i  107 (273)
T 3uf0_A           28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDGVKEVADEIADGGGSAEAVVADLADLEGAANVAEELAATRRV  107 (273)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHTTTCEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            356889999999999999999999999999999997642110    01223578999999999998877654      69


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||||....          +...+++|+.++.++++++    ++.+.++||++||...-.+..+...|+.+|.+.+.
T Consensus       108 D~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~~  187 (273)
T 3uf0_A          108 DVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSGRIVTIASMLSFQGGRNVAAYAASKHAVVG  187 (273)
T ss_dssp             CEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSCHHHHHHHHHHHH
T ss_pred             cEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchHhcCCCCCChhHHHHHHHHHH
Confidence            999999996532          2457899999999888876    44566799999994333344556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       188 l~~~la  193 (273)
T 3uf0_A          188 LTRALA  193 (273)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=99.86  E-value=1.7e-21  Score=152.96  Aligned_cols=138  Identities=17%  Similarity=0.127  Sum_probs=108.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEeEE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~  127 (202)
                      |+++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|++|+++++++++       ++|++||
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            589999999999999999999999999999997543111  1112478899999999999998876       5899999


Q ss_pred             ccccCC-----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          128 CVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       128 ~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||...           ++...+++|+.++.++.+++.    +.+.++||++||.....+..+...|+.+|.+.+.+.+.
T Consensus        81 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~  160 (248)
T 3asu_A           81 NAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN  160 (248)
T ss_dssp             CCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCceEEEEccchhccCCCCCchHHHHHHHHHHHHHH
Confidence            999642           123577899999998887764    45668999999943223344567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       161 la  162 (248)
T 3asu_A          161 LR  162 (248)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=99.86  E-value=2.4e-21  Score=153.41  Aligned_cols=140  Identities=16%  Similarity=0.101  Sum_probs=111.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       
T Consensus        19 ~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   98 (274)
T 1ja9_A           19 LAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG   98 (274)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999984322111      1113578899999999999988887       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK---GVKRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|+||||||....          +...+++|+.++.++++++.+.   + ++||++|| ..+..+......|+.+|.+.
T Consensus        99 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~~Y~~sK~a~  177 (274)
T 1ja9_A           99 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-GRIILTSSIAAVMTGIPNHALYAGSKAAV  177 (274)
T ss_dssp             CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-EEEEEECCGGGTCCSCCSCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CEEEEEcChHhccCCCCCCchHHHHHHHH
Confidence            79999999996431          2457789999999999988664   4 69999999 44423345567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+++.+.
T Consensus       178 ~~~~~~~~  185 (274)
T 1ja9_A          178 EGFCRAFA  185 (274)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=99.86  E-value=8e-22  Score=154.02  Aligned_cols=140  Identities=21%  Similarity=0.192  Sum_probs=109.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc---CCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS---WANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~---~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......   ..   ...++.++.+|+.|++++.++++       
T Consensus         5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   84 (248)
T 2pnf_A            5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEIANKYGVKAHGVEMNLLSEESINKAFEEIYNLVD   84 (248)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhhcCCceEEEEccCCCHHHHHHHHHHHHHhcC
Confidence            457899999999999999999999999999999997543111   00   23578899999999999988876       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|+||||||....          +...+++|+.++.++.+++    ++.+.++||++||. .+. +..+...|+.+|.+
T Consensus        85 ~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~-~~~~~~~Y~~sK~a  163 (248)
T 2pnf_A           85 GIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWGRIVNISSVVGFT-GNVGQVNYSTTKAG  163 (248)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCEEEEEECCHHHHH-CCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCcEEEEEccHHhcC-CCCCCchHHHHHHH
Confidence            79999999996432          2356789999997766654    45677899999993 222 23345789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.+.
T Consensus       164 ~~~~~~~la  172 (248)
T 2pnf_A          164 LIGFTKSLA  172 (248)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988763

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=99.86  E-value=2.2e-21  Score=154.91  Aligned_cols=141  Identities=13%  Similarity=0.108  Sum_probs=112.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       +
T Consensus         6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   85 (280)
T 3tox_A            6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIAGGGGEAAALAGDVGDEALHEALVELAVRRFGG   85 (280)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHTTTTCCEEECCCCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999998643111     1123578899999999999888776       6


Q ss_pred             ccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEec-cccCcCCcCCcchHHHHHH
Q 028890          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISA-ADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       122 ~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|++|||||....           +...+++|+.++.++.+++.    +.+.+++|++|| ..+..+......|+.+|.+
T Consensus        86 iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa  165 (280)
T 3tox_A           86 LDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGGSLTFTSSFVGHTAGFAGVAPYAASKAG  165 (280)
T ss_dssp             CCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCSBTTTBCCTTCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEEcChhhCcCCCCCchhHHHHHHH
Confidence            8999999996421           24578999999998888764    445569999999 4443445566789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       166 ~~~l~~~la  174 (280)
T 3tox_A          166 LIGLVQALA  174 (280)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=99.86  E-value=4.1e-21  Score=152.42  Aligned_cols=142  Identities=13%  Similarity=0.073  Sum_probs=113.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++++......      .....++.++.+|++|++++.++++      
T Consensus        15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   94 (270)
T 3is3_A           15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHF   94 (270)
T ss_dssp             CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578899999999999999999999999999998876433111      1124678999999999999888776      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHcCC--CEEEEEeccc-cCcCCcCCcchHHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAAD-FGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~~~--~~~v~~SS~~-~~~~~~~~~~Y~~sK~~~  186 (202)
                       ++|++|||||...          ++...+++|+.++.++.+++...-.  +++|++||.. ...+..+...|+.+|.+.
T Consensus        95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~  174 (270)
T 3is3_A           95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKDFSVPKHSLYSGSKGAV  174 (270)
T ss_dssp             SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTTCCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhccCCCCCCchhHHHHHHH
Confidence             6899999999643          1345789999999999999876533  4999999943 334455667899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       175 ~~~~~~la  182 (270)
T 3is3_A          175 DSFVRIFS  182 (270)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=99.86  E-value=1.9e-21  Score=154.87  Aligned_cols=125  Identities=15%  Similarity=0.104  Sum_probs=100.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      ++|+|+|||| ||||++++++|+++|++|++++|++.+. ......+++++.+|+.|.+     ++++|+|||+|+....
T Consensus         4 m~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~d~~-----~~~~d~vi~~a~~~~~   76 (286)
T 3ius_A            4 MTGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQM-EAIRASGAEPLLWPGEEPS-----LDGVTHLLISTAPDSG   76 (286)
T ss_dssp             -CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGH-HHHHHTTEEEEESSSSCCC-----CTTCCEEEECCCCBTT
T ss_pred             CcCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhh-hhHhhCCCeEEEecccccc-----cCCCCEEEECCCcccc
Confidence            4689999998 9999999999999999999999986542 1222367999999999855     7899999999997543


Q ss_pred             CccchhhhHHHHHHHHHHHHH--cCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHHHHHHh
Q 028890          135 NSYMYKINGTANINAIRAASE--KGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~--~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ..       ..+.++++++++  .++++|||+|| .+|+...          .+.+.|+.+|+.+|++++.+
T Consensus        77 ~~-------~~~~~l~~a~~~~~~~~~~~v~~Ss~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~~~  141 (286)
T 3ius_A           77 GD-------PVLAALGDQIAARAAQFRWVGYLSTTAVYGDHDGAWVDETTPLTPTAARGRWRVMAEQQWQAV  141 (286)
T ss_dssp             BC-------HHHHHHHHHHHHTGGGCSEEEEEEEGGGGCCCTTCEECTTSCCCCCSHHHHHHHHHHHHHHHS
T ss_pred             cc-------HHHHHHHHHHHhhcCCceEEEEeecceecCCCCCCCcCCCCCCCCCCHHHHHHHHHHHHHHhh
Confidence            32       234678899988  78899999999 6776432          24567999999999999987

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=99.86  E-value=2.8e-21  Score=150.09  Aligned_cols=139  Identities=15%  Similarity=0.071  Sum_probs=110.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+.+....      .....++.++.+|++|++++.++++       +
T Consensus         1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~   80 (235)
T 3l77_A            1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGD   80 (235)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCC
Confidence            36899999999999999999999999999999998543111      1224678999999999999998887       6


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|++|||||....          +...+++|+.++.++++++..   .+.+++|++||............|+.+|++.+.
T Consensus        81 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~ii~~sS~~~~~~~~~~~~Y~~sKaa~~~  160 (235)
T 3l77_A           81 VDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGGLALVTTSDVSARLIPYGGGYVSTKWAARA  160 (235)
T ss_dssp             CSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCGGGSSCCTTCHHHHHHHHHHHH
T ss_pred             CCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcEEEEecchhcccCCCcchHHHHHHHHHH
Confidence            8999999996431          245778999999998888754   234688888884333444456789999999999


Q ss_pred             HHHHh
Q 028890          189 VAACQ  193 (202)
Q Consensus       189 ~~~~~  193 (202)
                      +.+.+
T Consensus       161 ~~~~l  165 (235)
T 3l77_A          161 LVRTF  165 (235)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99886

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=99.86  E-value=3.7e-21  Score=153.28  Aligned_cols=141  Identities=17%  Similarity=0.093  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       +
T Consensus        20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   99 (277)
T 2rhc_B           20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGP   99 (277)
T ss_dssp             TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence            467899999999999999999999999999999998543111     0113568899999999999888776       6


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc------CCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK------GVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~------~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|++|||||....          +...+++|+.++.++++++.+.      +.++||++||...-.+..+...|+.+|.+
T Consensus       100 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  179 (277)
T 2rhc_B          100 VDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHG  179 (277)
T ss_dssp             CSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCeEEEEECccccccCCCCCccHHHHHHH
Confidence            8999999996431          2457789999999998886543      56799999994222233456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       180 ~~~~~~~la  188 (277)
T 2rhc_B          180 VVGFTKALG  188 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=99.86  E-value=1.4e-21  Score=151.70  Aligned_cols=140  Identities=15%  Similarity=0.122  Sum_probs=106.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      ++++++||||+|+||++++++|+++|++|++++|+...... .....++.++.+|++|++++.++++       ++|++|
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            45789999999999999999999999999999997543111 0011268899999999998887765       689999


Q ss_pred             EccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||....          +...+++|+.++.++.+.    +++.+.++||++||.....+..+...|+.+|.+.+.+++.
T Consensus        84 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  163 (234)
T 2ehd_A           84 NNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGGTIVNVGSLAGKNPFKGGAAYNASKFGLLGLAGA  163 (234)
T ss_dssp             ECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCcEEEEECCchhcCCCCCCchhhHHHHHHHHHHHH
Confidence            99996431          234678999999755554    4556678999999942222344567899999999988876


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       164 la  165 (234)
T 2ehd_A          164 AM  165 (234)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=99.86  E-value=2.2e-21  Score=153.09  Aligned_cols=141  Identities=17%  Similarity=0.123  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc---C-CCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS---W-ANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~---~-~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......   ..   . ..++.++.+|++|+++++++++      
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (260)
T 2z1n_A            5 IQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRIASLVSGAQVDIVAGDIREPGDIDRLFEKARDLG   84 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            457899999999999999999999999999999997543111   00   0 2278899999999999988886      


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||...          .+...+++|+.++.++.+++    ++.+.++||++||...-.+..+...|+.+|.+.
T Consensus        85 gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~  164 (260)
T 2z1n_A           85 GADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWGRMVYIGSVTLLRPWQDLALSNIMRLPV  164 (260)
T ss_dssp             CCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHTHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECchhhcCCCCCCchhHHHHHHH
Confidence            5999999999542          12456789999997666655    455678999999932222334567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       165 ~~~~~~la  172 (260)
T 2z1n_A          165 IGVVRTLA  172 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888753

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=99.86  E-value=1.8e-21  Score=155.25  Aligned_cols=141  Identities=16%  Similarity=0.106  Sum_probs=111.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|+
T Consensus        27 l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  106 (277)
T 3gvc_A           27 LAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVDK  106 (277)
T ss_dssp             CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999997543111  1124578999999999998887776       6899


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          +...+++|+.++.++.+++.    +.+.++||++||.....+..+...|+.+|.+.+.+.
T Consensus       107 lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~  186 (277)
T 3gvc_A          107 LVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGGAIVNLSSLAGQVAVGGTGAYGMSKAGIIQLS  186 (277)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCchhHHHHHHHHHHHH
Confidence            9999996431          34578899999998888764    355679999999433334455678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       187 ~~la  190 (277)
T 3gvc_A          187 RITA  190 (277)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=99.86  E-value=2.7e-21  Score=152.13  Aligned_cols=141  Identities=13%  Similarity=0.078  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       +
T Consensus        11 l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (260)
T 3awd_A           11 LDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDLRMEGHDVSSVVMDVTNTESVQNAVRSVHEQEGR   90 (260)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999997543110     1113578999999999999888776       6


Q ss_pred             ccEeEEccccCC-C----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEec-cccC-cCCcCCcchHHHHH
Q 028890          122 VTAVISCVGGFG-S----------NSYMYKINGTANINAIRAASE----KGVKRFVYISA-ADFG-VANYLLQGYYEGKV  184 (202)
Q Consensus       122 ~d~vi~~a~~~~-~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS-~~~~-~~~~~~~~Y~~sK~  184 (202)
                      +|+||||||... .          +...+++|+.++.++++++.+    .+.++||++|| ..+. .+..+...|+.+|.
T Consensus        91 id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~Y~~sK~  170 (260)
T 3awd_A           91 VDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQGVIVAIGSMSGLIVNRPQQQAAYNASKA  170 (260)
T ss_dssp             CCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCCHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEecchhcccCCCCCccccHHHHH
Confidence            899999999643 1          134678999999998888753    46679999999 3322 22223378999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.|.+++.+.
T Consensus       171 a~~~~~~~l~  180 (260)
T 3awd_A          171 GVHQYIRSLA  180 (260)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=99.86  E-value=2.6e-21  Score=152.87  Aligned_cols=142  Identities=15%  Similarity=0.027  Sum_probs=112.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            3467899999999999999999999999999999998643111     1124578999999999999888775       


Q ss_pred             CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|++|||||...           .+...+++|+.++.++++++.    +.+.++||++||.....+..+...|+.+|.+
T Consensus       106 ~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  185 (262)
T 3rkr_A          106 RCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRGHIINISSLAGKNPVADGAAYTASKWG  185 (262)
T ss_dssp             CCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEEECSSCSSCCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCchHHHHHHH
Confidence            4899999999621           124577899999998888763    4566799999994333444556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.++
T Consensus       186 ~~~l~~~la  194 (262)
T 3rkr_A          186 LNGLMTSAA  194 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=99.86  E-value=5.6e-21  Score=150.23  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=111.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccC--CCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNL--LSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~--~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|+  .|+++++++++     
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   89 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAVN   89 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHHh
Confidence            577899999999999999999999999999999998543111      11123788999999  88988877765     


Q ss_pred             --CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                        ++|++|||||....           +...+++|+.++.++.+++    ++.+.++||++||...-.+......|+.+|
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  169 (252)
T 3f1l_A           90 YPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRANWGAYAASK  169 (252)
T ss_dssp             CSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCEEEEECChhhccCCCCCchhHHHH
Confidence              68999999996421           2456899999999988887    445667999999943333445567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+.+.++
T Consensus       170 ~a~~~l~~~la  180 (252)
T 3f1l_A          170 FATEGMMQVLA  180 (252)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=99.86  E-value=6.9e-21  Score=152.80  Aligned_cols=142  Identities=13%  Similarity=0.117  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++      
T Consensus        44 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  123 (291)
T 3ijr_A           44 KLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQL  123 (291)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            3578899999999999999999999999999999998643111      1224578999999999999888776      


Q ss_pred             -CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 -~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                       ++|++|||||....           +...+++|+.++.++++++...  ..++||++||.....+......|+.+|.+.
T Consensus       124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  203 (291)
T 3ijr_A          124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVAYEGNETLIDYSATKGAI  203 (291)
T ss_dssp             SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHhcCCCCCChhHHHHHHHH
Confidence             68999999996421           2457899999999999998764  235999999942222344567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       204 ~~l~~~la  211 (291)
T 3ijr_A          204 VAFTRSLS  211 (291)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=99.86  E-value=5e-21  Score=151.38  Aligned_cols=142  Identities=18%  Similarity=0.083  Sum_probs=111.9

Q ss_pred             CCCCCeEEEEccCC-hhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNG-FVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G-~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ..++++++||||+| +||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++     
T Consensus        19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            45788999999997 79999999999999999999998643111      1123579999999999999888776     


Q ss_pred             --CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc-----CCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK-----GVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~-----~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                        ++|++|||||....          +...+++|+.++.++.+++...     +.++||++||...-.+..+...|+.+|
T Consensus        99 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK  178 (266)
T 3o38_A           99 AGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGGVIVNNASVLGWRAQHSQSHYAAAK  178 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCEEEEEECCGGGTCCCTTCHHHHHHH
T ss_pred             hCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHcCCCCCCchHHHHH
Confidence              57999999996431          2456789999999998887543     456899999943333445668899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       179 aa~~~~~~~la  189 (266)
T 3o38_A          179 AGVMALTRCSA  189 (266)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=99.86  E-value=2.3e-21  Score=150.30  Aligned_cols=139  Identities=14%  Similarity=0.128  Sum_probs=109.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhcCc----cEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALDGV----TAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~----d~vi~~a  129 (202)
                      ||+++||||+|+||++++++|+++|++|++++|+.+...  ......++.++.+|++|+++++++++.+    |++||||
T Consensus         1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~A   80 (230)
T 3guy_A            1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSA   80 (230)
T ss_dssp             --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECC
T ss_pred             CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeC
Confidence            578999999999999999999999999999999864321  1122457889999999999999988764    9999999


Q ss_pred             ccCC----------CCccchhhhHHHHHHHHHHHHHcC---CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          130 GGFG----------SNSYMYKINGTANINAIRAASEKG---VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       130 ~~~~----------~~~~~~~~n~~~~~~~~~~~~~~~---~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      |...          .+...+++|+.++.++++++....   ..++|++||.....+......|+.+|.+.+.+.+.++
T Consensus        81 g~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~la  158 (230)
T 3guy_A           81 GSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQPKAQESTYCAVKWAVKGLIESVR  158 (230)
T ss_dssp             CCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCCCCCCCchhHHHHHHHHHHHHHHH
Confidence            9643          124567999999999988875531   2399999994333345566789999999999988764

>3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=99.86  E-value=3.5e-21  Score=151.40  Aligned_cols=142  Identities=19%  Similarity=0.206  Sum_probs=109.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++++++......      .....++.++.+|++|+++++++++      
T Consensus        10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   89 (256)
T 3ezl_A           10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPRRVKWLEDQKALGFDFYASEGNVGDWDSTKQAFDKVKAEV   89 (256)
T ss_dssp             ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSSHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeeEEEecCCCCHHHHHHHHHHHHHhc
Confidence            3578899999999999999999999999999998844333211      1123578999999999998888776      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||....          +...+++|+.++.++.+++    ++.+.++||++||...-.+..+...|+.+|.+
T Consensus        90 g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  169 (256)
T 3ezl_A           90 GEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWGRIINISSVNGQKGQFGQTNYSTAKAG  169 (256)
T ss_dssp             CCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGSCSCCHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEEcchhhccCCCCCcccHHHHHH
Confidence             68999999996431          2457889999988876665    45666799999994333344566889999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       170 ~~~~~~~la  178 (256)
T 3ezl_A          170 IHGFTMSLA  178 (256)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888754

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=99.86  E-value=5.8e-21  Score=151.78  Aligned_cols=141  Identities=16%  Similarity=0.161  Sum_probs=112.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++++......      .....++.++.+|++|+++++++++       
T Consensus        29 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  108 (271)
T 3v2g_A           29 LAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG  108 (271)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            567899999999999999999999999999998776532111      1124578899999999999888776       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEecc-ccCcCCcCCcchHHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAA-DFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|++|||||...          ++...+++|+.++.++++++...  +.++||++||. ....+..+...|+.+|.+.+
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~  188 (271)
T 3v2g_A          109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGSNLAELVPWPGISLYSASKAALA  188 (271)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCGGGTCCCSTTCHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeChhhccCCCCCchHHHHHHHHHH
Confidence            7899999999643          13457889999999999998764  34699999984 32223455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       189 ~l~~~la  195 (271)
T 3v2g_A          189 GLTKGLA  195 (271)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=99.86  E-value=8.4e-21  Score=148.78  Aligned_cols=135  Identities=20%  Similarity=0.151  Sum_probs=105.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.....      .+..+.+|++|+++++++++       ++|++|
T Consensus        13 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~------~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   86 (247)
T 1uzm_A           13 FVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK------GLFGVEVDVTDSDAVDRAFTAVEEHQGPVEVLV   86 (247)
T ss_dssp             CCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT------TSEEEECCTTCHHHHHHHHHHHHHHHSSCSEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHH------HhcCeeccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999999999999999999999999999999765421      22248899999998888775       579999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          .+...+++|+.++.++++++.    +.+.++||++||...-.+......|+.+|.+.+.+.+.
T Consensus        87 ~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  166 (247)
T 1uzm_A           87 SNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMARS  166 (247)
T ss_dssp             EECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEECCHhhccCCCCChhHHHHHHHHHHHHHH
Confidence            9999643          134577899999998888764    45667999999942222234457899999999988887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       167 la  168 (247)
T 1uzm_A          167 IA  168 (247)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=99.86  E-value=4.3e-21  Score=152.19  Aligned_cols=136  Identities=18%  Similarity=0.105  Sum_probs=108.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.....      ....+.+|++|.+++.++++       ++|++
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~------~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iD~l   98 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA------ADLHLPGDLREAAYADGLPGAVAAGLGRLDIV   98 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC------CSEECCCCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH------hhhccCcCCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            356789999999999999999999999999999999765421      22445889999988777665       68999


Q ss_pred             EEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||....          +...+++|+.++.++.+++    ++.+.++||++||...-.+..+...|+.+|.+.+.+.+
T Consensus        99 vnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~  178 (266)
T 3uxy_A           99 VNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGGAIVNVASCWGLRPGPGHALYCLTKAALASLTQ  178 (266)
T ss_dssp             EECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTBCCTTBHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCChHHHHHHHHHHHHHH
Confidence            999996431          2456789999999998887    55667799999994333344556789999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       179 ~la  181 (266)
T 3uxy_A          179 CMG  181 (266)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=99.86  E-value=2.2e-21  Score=154.57  Aligned_cols=141  Identities=18%  Similarity=0.219  Sum_probs=108.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------c-cCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~-~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      . ....++.++.+|++|++++.++++      
T Consensus        30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  109 (279)
T 1xg5_A           30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH  109 (279)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999997543111      0 012467889999999999888776      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHH----HHHHHHHHHHcCC--CEEEEEec-cccC-cCCcCCcchHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTA----NINAIRAASEKGV--KRFVYISA-ADFG-VANYLLQGYYE  181 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~----~~~~~~~~~~~~~--~~~v~~SS-~~~~-~~~~~~~~Y~~  181 (202)
                       ++|+||||||....          +...+++|+.+    +..+++.+++.+.  ++||++|| ..+. .+..+...|+.
T Consensus       110 g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~  189 (279)
T 1xg5_A          110 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSA  189 (279)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcChhhcccCCCCCCchhHH
Confidence             79999999996431          23567899999    5566667777765  79999999 4443 23445578999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+++.+.
T Consensus       190 sK~a~~~~~~~la  202 (279)
T 1xg5_A          190 TKYAVTALTEGLR  202 (279)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888653

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=99.86  E-value=6.2e-21  Score=149.54  Aligned_cols=141  Identities=15%  Similarity=0.138  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCce-eEEEccCCCHhhHHHHh------cCccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNV-IWHQGNLLSSDSWKEAL------DGVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~-~~~~~D~~~~~~~~~~~------~~~d~  124 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+..+...  .....++ .++.+|++|++++.+++      .++|+
T Consensus         9 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~   88 (254)
T 2wsb_A            9 LDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPVSI   88 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCCcE
Confidence            467899999999999999999999999999999997543111  1112355 88999999999988876      47899


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccC-cCCcCCcchHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFG-VANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~-~~~~~~~~Y~~sK~~~E~  188 (202)
                      ||||||....          +...+++|+.++.++.+++    ++.+.++||++|| ..+. .+..+...|+.+|.+.|.
T Consensus        89 li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~  168 (254)
T 2wsb_A           89 LVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAGAIVNLGSMSGTIVNRPQFASSYMASKGAVHQ  168 (254)
T ss_dssp             EEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCSSSCBHHHHHHHHHHHH
T ss_pred             EEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEEecchhccCCCCCcchHHHHHHHHHHH
Confidence            9999996431          1346789999987776654    4566789999999 3332 233334789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.+.
T Consensus       169 ~~~~~~  174 (254)
T 2wsb_A          169 LTRALA  174 (254)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=99.86  E-value=1.9e-21  Score=152.31  Aligned_cols=140  Identities=13%  Similarity=0.093  Sum_probs=107.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEec-CCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r-~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++|+++||||+|+||++++++|+++|++|++++| +......     .....++.++.+|++|+++++++++       +
T Consensus         3 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   82 (246)
T 2uvd_A            3 KGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEIKKLGSDAIAVRADVANAEDVTNMVKQTVDVFGQ   82 (246)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            5689999999999999999999999999999998 4322100     1113578899999999999888776       6


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||....          +...+++|+.++.++.+++    ++.+.++||++||.....+.+....|+.+|.+.+
T Consensus        83 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~  162 (246)
T 2uvd_A           83 VDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHGRIVNIASVVGVTGNPGQANYVAAKAGVI  162 (246)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTBHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCHHhcCCCCCCchHHHHHHHHH
Confidence            9999999996431          2456789999987766655    4456789999999322122345678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       163 ~~~~~la  169 (246)
T 2uvd_A          163 GLTKTSA  169 (246)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887653

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=99.86  E-value=3.9e-21  Score=150.70  Aligned_cols=140  Identities=16%  Similarity=0.063  Sum_probs=109.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   84 (247)
T 2jah_A            5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDELTAAGAKVHVLELDVADRQGVDAAVASTVEALGG   84 (247)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999997543111     0113578899999999999887775       6


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||....          +...+++|+.++.++.+++.    +.+ ++||++||.....+......|+.+|.+.+
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~  163 (247)
T 2jah_A           85 LDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-GTVVQMSSIAGRVNVRNAAVYQATKFGVN  163 (247)
T ss_dssp             CSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTCCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-CEEEEEccHHhcCCCCCCcHHHHHHHHHH
Confidence            8999999996421          23567899999998888764    345 79999999422233445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       164 ~~~~~la  170 (247)
T 2jah_A          164 AFSETLR  170 (247)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888753

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=99.86  E-value=2.4e-21  Score=153.88  Aligned_cols=141  Identities=14%  Similarity=0.073  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++       
T Consensus        26 l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g  105 (269)
T 4dmm_A           26 LTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAIAAAGGEAFAVKADVSQESEVEALFAAVIERWG  105 (269)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999885432111      1124578999999999999888776       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||...          .+...+++|+.++.++.+++    ++.+.++||++||...-.+......|+.+|.+.
T Consensus       106 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  185 (269)
T 4dmm_A          106 RLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSGRIINIASVVGEMGNPGQANYSAAKAGV  185 (269)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCHHHHHCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhcCCCCCchhHHHHHHHH
Confidence            6899999999653          13457889999999888876    445667999999932222334567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       186 ~~l~~~la  193 (269)
T 4dmm_A          186 IGLTKTVA  193 (269)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888764

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=99.86  E-value=3.4e-21  Score=146.18  Aligned_cols=124  Identities=16%  Similarity=0.129  Sum_probs=102.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC---ccEeEEccccCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG---VTAVISCVGGFG  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~d~vi~~a~~~~  133 (202)
                      |+++||||+|+||++++++|+ +|++|++++|+..            ++.+|+.|++++++++++   +|+||||||...
T Consensus         4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~------------~~~~D~~~~~~~~~~~~~~~~~d~vi~~ag~~~   70 (202)
T 3d7l_A            4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG------------DVTVDITNIDSIKKMYEQVGKVDAIVSATGSAT   70 (202)
T ss_dssp             CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS------------SEECCTTCHHHHHHHHHHHCCEEEEEECCCCCC
T ss_pred             cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc------------ceeeecCCHHHHHHHHHHhCCCCEEEECCCCCC
Confidence            489999999999999999999 9999999999753            478999999999988875   899999999542


Q ss_pred             C----------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          134 S----------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ~----------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .          +...+++|+.++.++++++.+.   + ++||++||.....+..+...|+.+|.+.|.+++.+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~~iv~~sS~~~~~~~~~~~~Y~~sK~~~~~~~~~~~  143 (202)
T 3d7l_A           71 FSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK-GSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAA  143 (202)
T ss_dssp             CCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE-EEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC-CEEEEEcchhhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence            1          1245689999999999998775   4 699999994222334456789999999999999875

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.86  E-value=2.4e-21  Score=151.69  Aligned_cols=139  Identities=13%  Similarity=0.057  Sum_probs=108.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~  127 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+..+........++.++.+|++|+++++++++       ++|++||
T Consensus         4 ~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lvn   83 (245)
T 1uls_A            4 KDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVVH   83 (245)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            568999999999999999999999999999999975432111111137889999999999888776       4899999


Q ss_pred             ccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          128 CVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       128 ~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |||....          +...+++|+.++.++.+++.+    .+.++||++||.. ..+......|+.+|.+.+.+.+.+
T Consensus        84 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~-~~~~~~~~~Y~asK~a~~~~~~~l  162 (245)
T 1uls_A           84 YAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASRV-YLGNLGQANYAASMAGVVGLTRTL  162 (245)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCGG-GGCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEccch-hcCCCCchhHHHHHHHHHHHHHHH
Confidence            9996431          245678999999988887754    3567999999943 333345678999999999888875


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      +
T Consensus       163 a  163 (245)
T 1uls_A          163 A  163 (245)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=99.86  E-value=1.3e-20  Score=150.28  Aligned_cols=129  Identities=18%  Similarity=0.162  Sum_probs=102.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~  135 (202)
                      |+|+||||+|+||++++++|+++ |++|++++|++.+. ......+++++.+|+.|++++.++++++|+||||++.... 
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~-~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~-   78 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKV-PDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSIIHP-   78 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGS-CGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCCCCS-
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHH-HHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCCCcc-
Confidence            57999999999999999999998 99999999987543 2223468999999999999999999999999999987542 


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          136 SYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                         ...|+.++.+++++|++.++++|||+||.  +........+...+..+|..++.
T Consensus        79 ---~~~~~~~~~~l~~aa~~~gv~~iv~~Ss~--~~~~~~~~~~~~~~~~~e~~~~~  130 (289)
T 3e48_A           79 ---SFKRIPEVENLVYAAKQSGVAHIIFIGYY--ADQHNNPFHMSPYFGYASRLLST  130 (289)
T ss_dssp             ---HHHHHHHHHHHHHHHHHTTCCEEEEEEES--CCSTTCCSTTHHHHHHHHHHHHH
T ss_pred             ---chhhHHHHHHHHHHHHHcCCCEEEEEccc--CCCCCCCCccchhHHHHHHHHHH
Confidence               34578999999999999999999999993  32222222233344456666654

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=99.86  E-value=5.6e-21  Score=152.19  Aligned_cols=141  Identities=13%  Similarity=0.126  Sum_probs=112.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~------~~  122 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++      ++
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~g~i  110 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASGGTAQELAGDLSEAGAGTDLIERAEAIAPV  110 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTTCCEEEEECCTTSTTHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            467899999999999999999999999999999998755221     1124678999999999998887776      68


Q ss_pred             cEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||||...          ++...+++|+.++.++.+++    ++.+.++||++||.....+......|+.||.+.+.
T Consensus       111 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~  190 (275)
T 4imr_A          111 DILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWGRVVSIGSINQLRPKSVVTAYAATKAAQHN  190 (275)
T ss_dssp             CEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEECCHHhCCCCCCchhhHHHHHHHHH
Confidence            99999999633          12456789999999888886    44566799999993222244455679999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       191 l~~~la  196 (275)
T 4imr_A          191 LIQSQA  196 (275)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=99.85  E-value=7.3e-21  Score=150.30  Aligned_cols=142  Identities=13%  Similarity=0.082  Sum_probs=110.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCC---CeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ..++++++||||+|+||++++++|+++|   ++|++++|+......    .....++.++.+|++|++++.++++     
T Consensus        18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   97 (267)
T 1sny_A           18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGV   97 (267)
T ss_dssp             --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHHHHhhccCCceEEEEecCCChHHHHHHHHHHHHh
Confidence            3577899999999999999999999999   999999998654211    0113578999999999999988876     


Q ss_pred             ----CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHHHc----------C-----CCEEEEEec-ccc
Q 028890          121 ----GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEK----------G-----VKRFVYISA-ADF  169 (202)
Q Consensus       121 ----~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~----------~-----~~~~v~~SS-~~~  169 (202)
                          ++|+||||||...           .+...+++|+.++.++++++...          +     .++||++|| ..+
T Consensus        98 ~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~  177 (267)
T 1sny_A           98 TKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGS  177 (267)
T ss_dssp             HGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGC
T ss_pred             cCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccccccCCCceEEEEeccccc
Confidence                7999999999643           12346789999999988887542          2     479999999 433


Q ss_pred             CcCC--cCCcchHHHHHHHHHHHHHhc
Q 028890          170 GVAN--YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       170 ~~~~--~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....  .+...|+.+|.+.|.+++.+.
T Consensus       178 ~~~~~~~~~~~Y~~sK~a~~~~~~~la  204 (267)
T 1sny_A          178 IQGNTDGGMYAYRTSKSALNAATKSLS  204 (267)
T ss_dssp             STTCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            3221  355689999999999988764

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=99.85  E-value=4.1e-21  Score=152.65  Aligned_cols=141  Identities=17%  Similarity=0.090  Sum_probs=110.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHh--------c
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEAL--------D  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~--------~  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++++++        .
T Consensus        19 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g   98 (273)
T 1ae1_A           19 LKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG   98 (273)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred             CCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999998543111     111357889999999999888776        4


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||...          ++...+++|+.++.++.+++    ++.+.++||++||...-.+.++...|+.+|.+.
T Consensus        99 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  178 (273)
T 1ae1_A           99 KLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGAI  178 (273)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcCHhhcCCCCCcchhHHHHHHH
Confidence            6899999999643          12346789999999988877    345667999999932222334567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       179 ~~~~~~la  186 (273)
T 1ae1_A          179 NQMTKSLA  186 (273)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988763

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=99.85  E-value=6.9e-21  Score=151.73  Aligned_cols=142  Identities=13%  Similarity=0.146  Sum_probs=111.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       
T Consensus        29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  108 (276)
T 3r1i_A           29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGELG  108 (276)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            3567899999999999999999999999999999997654211     1123578899999999999988877       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEec-cccC-cCCcCCcchHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISA-ADFG-VANYLLQGYYEGK  183 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS-~~~~-~~~~~~~~Y~~sK  183 (202)
                      ++|++|||||....          +...+++|+.++.++.+++..    .+ .+++|++|| ..+. ....+...|+.||
T Consensus       109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~asK  188 (276)
T 3r1i_A          109 GIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMSGHIINIPQQVSHYCTSK  188 (276)
T ss_dssp             CCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCCSSCCHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchHhcccCCCCCcchHHHHH
Confidence            78999999996432          234668999999988887643    33 268999999 3332 2334567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+.+.++
T Consensus       189 aa~~~l~~~la  199 (276)
T 3r1i_A          189 AAVVHLTKAMA  199 (276)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=99.85  E-value=2.1e-21  Score=151.52  Aligned_cols=138  Identities=12%  Similarity=0.026  Sum_probs=108.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc---
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD---  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~---  120 (202)
                      +|+++||||+|+||++++++|+++|+       +|++++|+......     .....++.++.+|++|++++.++++   
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   81 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIV   81 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHHHccCCeeeEEEecCCCHHHHHHHHHHHH
Confidence            57899999999999999999999999       99999997543111     1113578899999999999888776   


Q ss_pred             ----CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHH
Q 028890          121 ----GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 ----~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                          ++|+||||||....          +...+++|+.++.++++++.    +.+.++||++||...-.+..+...|+.+
T Consensus        82 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~s  161 (244)
T 2bd0_A           82 ERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMS  161 (244)
T ss_dssp             HHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             HhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEEecchhcCCCCCCchhHHH
Confidence                69999999996431          23467899999998888874    3466799999993222334456789999


Q ss_pred             HHHHHHHHHHh
Q 028890          183 KVLSSDVAACQ  193 (202)
Q Consensus       183 K~~~E~~~~~~  193 (202)
                      |.+.|.+++.+
T Consensus       162 K~a~~~~~~~l  172 (244)
T 2bd0_A          162 KFGQRGLVETM  172 (244)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=99.85  E-value=4.4e-21  Score=150.72  Aligned_cols=141  Identities=17%  Similarity=0.110  Sum_probs=109.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCe-EEEEecCCCCcc-c---cc-CCCceeEEEccCCCH-hhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSL-R---DS-WANNVIWHQGNLLSS-DSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l~r~~~~~~-~---~~-~~~~~~~~~~D~~~~-~~~~~~~~------  120 (202)
                      .++|+++||||+|+||++++++|+++|++ |++++|+..... .   .. ...++.++.+|++|+ +++.++++      
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   82 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhCCCceEEEEEEecCCChHHHHHHHHHHHHhc
Confidence            35789999999999999999999999997 999998764211 1   01 134688999999998 87777665      


Q ss_pred             -CccEeEEccccCC--CCccchhhhHHHHHHHHHHHHHc----C---CCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          121 -GVTAVISCVGGFG--SNSYMYKINGTANINAIRAASEK----G---VKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       121 -~~d~vi~~a~~~~--~~~~~~~~n~~~~~~~~~~~~~~----~---~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                       ++|++|||||...  .+...+++|+.++.++++++...    +   .++||++||...-.+......|+.+|.+.+.++
T Consensus        83 g~id~lv~~Ag~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  162 (254)
T 1sby_A           83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFT  162 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCccCCHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEECchhhccCCCCchHHHHHHHHHHHHH
Confidence             7899999999643  45678899999999999887542    1   358999999322233445678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       163 ~~la  166 (254)
T 1sby_A          163 NSLA  166 (254)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=99.85  E-value=1.6e-21  Score=155.53  Aligned_cols=141  Identities=17%  Similarity=0.248  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccC---CCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSW---ANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~---~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     ...   ..++.++.+|++|++++.++++     
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   88 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAW   88 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999997643111     011   1278899999999998888776     


Q ss_pred             --CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                        ++|++|||||...           .+...+++|+.++.++++++.+    .+.++||++||.....+......|+.||
T Consensus        89 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK  168 (281)
T 3svt_A           89 HGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGGSFVGISSIAASNTHRWFGAYGVTK  168 (281)
T ss_dssp             HSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTCTHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEeCHHHcCCCCCChhHHHHH
Confidence              5799999999622           1245778999999998887643    4445999999932223344567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       169 ~a~~~l~~~la  179 (281)
T 3svt_A          169 SAVDHLMQLAA  179 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=99.85  E-value=4.2e-21  Score=152.73  Aligned_cols=141  Identities=13%  Similarity=0.079  Sum_probs=110.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      ..+++++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|++|+++++++++       ++|+
T Consensus        26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~  105 (272)
T 4dyv_A           26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVDV  105 (272)
T ss_dssp             --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999999999999999999999999999997543111  1123678999999999999888876       7999


Q ss_pred             eEEccccCCC-----------CccchhhhHHHHHHHHHHHH----HcC--CCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          125 VISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EKG--VKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       125 vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|||||....           +...+++|+.++.++.+++.    +.+  .++||++||.....+..+...|+.+|.+.+
T Consensus       106 lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaa~~  185 (272)
T 4dyv_A          106 LFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSISATSPRPYSAPYTATKHAIT  185 (272)
T ss_dssp             EEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCSSTTSCCTTCHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECchhhcCCCCCchHHHHHHHHHH
Confidence            9999996431           24578899999988877764    333  369999999433334455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       186 ~l~~~la  192 (272)
T 4dyv_A          186 GLTKSTS  192 (272)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988764

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=99.85  E-value=1.8e-21  Score=151.65  Aligned_cols=139  Identities=15%  Similarity=0.112  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      .+++++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|++
T Consensus         2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~l   81 (235)
T 3l6e_A            2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELV   81 (235)
T ss_dssp             -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEE
Confidence            35799999999999999999999999999999998643111  1112368999999999998888776       58999


Q ss_pred             EEccccCC----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||...          .+...+++|+.++.++.+++..    .+ +++|++||.....+......|+.||.+.+.+.+
T Consensus        82 vnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-~~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~  160 (235)
T 3l6e_A           82 LHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERG-GVLANVLSSAAQVGKANESLYCASKWGMRGFLE  160 (235)
T ss_dssp             EEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC-EEEEEECCEECCSSCSSHHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEEeCHHhcCCCCCCcHHHHHHHHHHHHHH
Confidence            99999642          1345789999999988888743    23 399999993222334455789999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       161 ~la  163 (235)
T 3l6e_A          161 SLR  163 (235)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=99.85  E-value=1.4e-20  Score=154.46  Aligned_cols=142  Identities=12%  Similarity=0.124  Sum_probs=113.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------------ccCCCceeEEEccCCCHhhHHHHhc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------------~~~~~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|+..+...            .....++.++.+|++|+++++++++
T Consensus        42 ~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~  121 (346)
T 3kvo_A           42 RLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKLLGTIYTAAEEIEAVGGKALPCIVDVRDEQQISAAVE  121 (346)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSSCCCHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhhHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHH
Confidence            3578899999999999999999999999999999998754211            1123578899999999999888776


Q ss_pred             -------CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEec-cccCc-CCcCCc
Q 028890          121 -------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISA-ADFGV-ANYLLQ  177 (202)
Q Consensus       121 -------~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS-~~~~~-~~~~~~  177 (202)
                             ++|++|||||...          .+...+++|+.++.++.+++.    +.+.++||++|| ..+.. +.....
T Consensus       122 ~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g~IV~iSS~~~~~~~~~~~~~  201 (346)
T 3kvo_A          122 KAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVAHILNISPPLNLNPVWFKQHC  201 (346)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCEEEEECCCCCCCGGGTSSSH
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCEEEEECCHHHcCCCCCCCch
Confidence                   7899999999643          124578999999999988874    445679999999 33322 244567


Q ss_pred             chHHHHHHHHHHHHHhc
Q 028890          178 GYYEGKVLSSDVAACQS  194 (202)
Q Consensus       178 ~Y~~sK~~~E~~~~~~~  194 (202)
                      .|+.+|.+.+.+.+.++
T Consensus       202 ~Y~aSKaal~~l~~~la  218 (346)
T 3kvo_A          202 AYTIAKYGMSMYVLGMA  218 (346)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            89999999999988764

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=99.85  E-value=3.7e-21  Score=151.44  Aligned_cols=139  Identities=19%  Similarity=0.201  Sum_probs=107.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      +|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       ++|
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   81 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFD   81 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence            5789999999999999999999999999999997543111     0113568899999999999888876       799


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|||||....          +...+++|+.++.++.+++.    +.+ .++||++||...-.+......|+.+|.+.+.
T Consensus        82 ~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~  161 (256)
T 1geg_A           82 VIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRG  161 (256)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCchhHHHHHHHHHH
Confidence            99999996431          23467899999988777664    344 5799999993222233445789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       162 ~~~~la  167 (256)
T 1geg_A          162 LTQTAA  167 (256)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.7e-21  Score=153.53  Aligned_cols=141  Identities=18%  Similarity=0.127  Sum_probs=108.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc--CC-------CceeEEEccCCCHhhHHHHhcC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS--WA-------NNVIWHQGNLLSSDSWKEALDG  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~--~~-------~~~~~~~~D~~~~~~~~~~~~~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......   ..  ..       .++.++.+|++|++++.+++++
T Consensus         5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~   84 (264)
T 2pd6_A            5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLLGGPGSKEGPPRGNHAAFQADVSEARAARCLLEQ   84 (264)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC------------CCEEEECCTTSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCccccccCcceEEEEecCCCHHHHHHHHHH
Confidence            356899999999999999999999999999999997543110   00  01       4688999999999998887764


Q ss_pred             -------c-cEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc----C-CCEEEEEeccccCcCCcCCcc
Q 028890          122 -------V-TAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK----G-VKRFVYISAADFGVANYLLQG  178 (202)
Q Consensus       122 -------~-d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~----~-~~~~v~~SS~~~~~~~~~~~~  178 (202)
                             + |+||||||....          +...+++|+.++.++++++.+.    + .++||++||...-.+..+...
T Consensus        85 ~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  164 (264)
T 2pd6_A           85 VQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRGSIINISSIVGKVGNVGQTN  164 (264)
T ss_dssp             HHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTHHHHCCTTBHH
T ss_pred             HHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCceEEEECChhhccCCCCChh
Confidence                   4 999999996431          2356789999999998887543    4 569999999422223345678


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.+.|.+++.+.
T Consensus       165 Y~~sK~a~~~~~~~la  180 (264)
T 2pd6_A          165 YAASKAGVIGLTQTAA  180 (264)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999888763

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=99.85  E-value=4e-21  Score=153.06  Aligned_cols=142  Identities=15%  Similarity=0.100  Sum_probs=112.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++      
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~  103 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKLAGATGRRCLPLSMDVRAPPAVMAAVDQALKEF  103 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578899999999999999999999999999999998543111      1124578999999999998888776      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...          .+...+++|+.++.++.+++.    +.+.++||++||.....+......|+.+|.+
T Consensus       104 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  183 (277)
T 4fc7_A          104 GRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAA  183 (277)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCSHHHHTCTTCHHHHHHHHH
T ss_pred             CCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCcHHHHHHHHH
Confidence             6899999999532          234578999999999988873    3445699999994322334456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       184 ~~~l~~~la  192 (277)
T 4fc7_A          184 VDAMTRHLA  192 (277)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=99.85  E-value=2.7e-21  Score=153.27  Aligned_cols=141  Identities=14%  Similarity=0.066  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++       
T Consensus        18 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   97 (266)
T 4egf_A           18 LDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRALGEQFGTDVHTVAIDLAEPDAPAELARRAAEAFG   97 (266)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTSTTHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999997543111      1124678999999999998887776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|++|||||....          +...+++|+.++.++.+++..    .+ .++||++||.....+......|+.+|.+
T Consensus        98 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a  177 (266)
T 4egf_A           98 GLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAAALAPLPDHYAYCTSKAG  177 (266)
T ss_dssp             SCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchhhccCCCCChHHHHHHHH
Confidence            68999999996431          245678999999988887643    33 4599999994333344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       178 ~~~l~~~la  186 (266)
T 4egf_A          178 LVMATKVLA  186 (266)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=99.85  E-value=1.9e-21  Score=154.64  Aligned_cols=140  Identities=18%  Similarity=0.225  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEec-CCCCccc---c---cCCCceeEEEccCCCH----hhHHHHhc---
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRSSLR---D---SWANNVIWHQGNLLSS----DSWKEALD---  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r-~~~~~~~---~---~~~~~~~~~~~D~~~~----~~~~~~~~---  120 (202)
                      ++++++||||+|+||++++++|+++|++|++++| +......   .   ....++.++.+|++|+    +++.++++   
T Consensus        10 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   89 (276)
T 1mxh_A           10 ECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSF   89 (276)
T ss_dssp             -CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHhcCCceEEEeccCCCccccHHHHHHHHHHHH
Confidence            5689999999999999999999999999999999 5432110   0   0135788999999999    88887776   


Q ss_pred             ----CccEeEEccccCCC---------------------CccchhhhHHHHHHHHHHHHHc---CC------CEEEEEec
Q 028890          121 ----GVTAVISCVGGFGS---------------------NSYMYKINGTANINAIRAASEK---GV------KRFVYISA  166 (202)
Q Consensus       121 ----~~d~vi~~a~~~~~---------------------~~~~~~~n~~~~~~~~~~~~~~---~~------~~~v~~SS  166 (202)
                          ++|++|||||....                     +...+++|+.++.++++++.+.   +.      ++||++||
T Consensus        90 ~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~g~iv~isS  169 (276)
T 1mxh_A           90 RAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCD  169 (276)
T ss_dssp             HHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECC
T ss_pred             HhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHhcCCCCCCCCcEEEEECc
Confidence                68999999995321                     1246789999999999998763   33      79999999


Q ss_pred             cccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          167 ADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       167 ~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .....+..+...|+.+|.+.+.+.+.++
T Consensus       170 ~~~~~~~~~~~~Y~asK~a~~~l~~~la  197 (276)
T 1mxh_A          170 AMTDLPLPGFCVYTMAKHALGGLTRAAA  197 (276)
T ss_dssp             GGGGSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCCCeehHHHHHHHHHHHHHHH
Confidence            3222334456789999999999988764

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=99.85  E-value=5.5e-21  Score=151.82  Aligned_cols=142  Identities=12%  Similarity=0.074  Sum_probs=109.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       
T Consensus        28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  107 (272)
T 1yb1_A           28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG  107 (272)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            3467899999999999999999999999999999997543111     1113578999999999998888775       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|+||||||....          +...+++|+.++.++++++    ++.+.++||++||.....+..+...|+.+|.+.
T Consensus       108 ~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~  187 (272)
T 1yb1_A          108 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAA  187 (272)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEechhhcCCCCCchhHHHHHHHH
Confidence            68999999996432          2356789999988776665    445678999999932222233456799999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      |.+++.+.
T Consensus       188 ~~l~~~la  195 (272)
T 1yb1_A          188 VGFHKTLT  195 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988754

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=99.85  E-value=6.4e-21  Score=153.69  Aligned_cols=141  Identities=18%  Similarity=0.093  Sum_probs=111.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|++++.++++       +
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~  108 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG  108 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence            567899999999999999999999999999999998643111     1123578999999999999888776       6


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||....          +...+++|+.++.++++++.    +.+ .++||++||...-.+......|+.||.+.
T Consensus       109 id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  188 (301)
T 3tjr_A          109 VDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAGLVPNAGLGTYGVAKYGV  188 (301)
T ss_dssp             CSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCTTBHHHHHHHHHH
T ss_pred             CCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhhcCCCCCchHHHHHHHHH
Confidence            8999999996431          24578899999999888863    344 46999999943333445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.+.
T Consensus       189 ~~~~~~la  196 (301)
T 3tjr_A          189 VGLAETLA  196 (301)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888753

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.85  E-value=7.4e-21  Score=151.65  Aligned_cols=142  Identities=13%  Similarity=0.072  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc------------c------cccCCCceeEEEccCCCHhh
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------------L------RDSWANNVIWHQGNLLSSDS  114 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------------~------~~~~~~~~~~~~~D~~~~~~  114 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+....            .      ......++.++.+|++|+++
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~   91 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVEDQGRKALTRVLDVRDDAA   91 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHH
Confidence            35788999999999999999999999999999999853110            0      01123578899999999999


Q ss_pred             HHHHhc-------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcC
Q 028890          115 WKEALD-------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVA  172 (202)
Q Consensus       115 ~~~~~~-------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~  172 (202)
                      ++++++       ++|++|||||....          +...+++|+.++.++++++.    +.+ .++||++||...-.+
T Consensus        92 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~  171 (280)
T 3pgx_A           92 LRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSAGLKA  171 (280)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchhhccC
Confidence            888776       68999999996431          24567899999998888863    333 468999999433334


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ......|+.+|.+.+.+.+.++
T Consensus       172 ~~~~~~Y~asKaa~~~~~~~la  193 (280)
T 3pgx_A          172 TPGNGHYSASKHGLTALTNTLA  193 (280)
T ss_dssp             CTTBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHHHHHHHH
Confidence            4556789999999999988764

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=99.85  E-value=2.1e-21  Score=154.24  Aligned_cols=142  Identities=14%  Similarity=0.045  Sum_probs=111.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       
T Consensus        25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (270)
T 3ftp_A           25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAFKQAGLEGRGAVLNVNDATAVDALVESTLKEFG  104 (270)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            3467899999999999999999999999999999997543111     1123578899999999999888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||....          +...+++|+.++.++.+++.    +.+.++||++||...-.+......|+.+|.+.
T Consensus       105 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~  184 (270)
T 3ftp_A          105 ALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGGRIVNITSVVGSAGNPGQVNYAAAKAGV  184 (270)
T ss_dssp             CCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCEEEEECchhhCCCCCCchhHHHHHHHH
Confidence            68999999996431          24578899999999888774    34557999999932222344567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       185 ~~l~~~la  192 (270)
T 3ftp_A          185 AGMTRALA  192 (270)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888754

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=99.85  E-value=2.3e-21  Score=153.40  Aligned_cols=140  Identities=10%  Similarity=0.072  Sum_probs=111.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   88 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGR   88 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999997543111     1124578999999999999888776       6


Q ss_pred             ccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||...           .+...+++|+.++.++++++.    +.+ ++||++||.....+......|+.+|.+.
T Consensus        89 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa~  167 (264)
T 3ucx_A           89 VDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-GAVVNVNSMVVRHSQAKYGAYKMAKSAL  167 (264)
T ss_dssp             CSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-CEEEEECCGGGGCCCTTCHHHHHHHHHH
T ss_pred             CcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-CEEEEECcchhccCCCccHHHHHHHHHH
Confidence            899999998642           124568899999999888763    334 6999999943333445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       168 ~~~~~~la  175 (264)
T 3ucx_A          168 LAMSQTLA  175 (264)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=99.85  E-value=8.8e-21  Score=148.59  Aligned_cols=138  Identities=14%  Similarity=0.195  Sum_probs=109.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc-------CccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~  127 (202)
                      +|+|+||||+++||+++++.|+++|++|++++|+.+.... .....++.++++|++|+++++++++       ++|++||
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            5799999999999999999999999999999998543211 1224578899999999998887765       5899999


Q ss_pred             ccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          128 CVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       128 ~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |||...          +|+..+++|+.+++.+.+++.    +.+ +++|++||...-.+.+....|+.||++...+.+.+
T Consensus        82 NAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~-G~IInisS~~~~~~~~~~~~Y~asKaal~~ltk~l  160 (247)
T 3ged_A           82 NACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNK-GRIINIASTRAFQSEPDSEAYASAKGGIVALTHAL  160 (247)
T ss_dssp             CCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CcEEEEeecccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            998543          245678999999998877663    344 79999999433334445678999999999998876


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      +
T Consensus       161 A  161 (247)
T 3ged_A          161 A  161 (247)
T ss_dssp             H
T ss_pred             H
Confidence            4

>4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp}

Probab=99.85  E-value=6.1e-21  Score=149.23  Aligned_cols=135  Identities=17%  Similarity=0.162  Sum_probs=109.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHH-CCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-----CccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~-~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d~vi~~  128 (202)
                      ++|+++||||+|+||++++++|++ .|++|++++|+....     ...+.++.+|++|++++.++++     ++|++|||
T Consensus         3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~~-----~~~~~~~~~Dv~~~~~v~~~~~~~~~~~id~lv~n   77 (244)
T 4e4y_A            3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSFS-----AENLKFIKADLTKQQDITNVLDIIKNVSFDGIFLN   77 (244)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCCC-----CTTEEEEECCTTCHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEeccccccc-----cccceEEecCcCCHHHHHHHHHHHHhCCCCEEEEC
Confidence            578999999999999999999999 789999998876422     2467899999999999998876     78999999


Q ss_pred             cccCC----------CCccchhhhHHHHHHHHHHHHHcCC--CEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          129 VGGFG----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       129 a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ||...          .+...+++|+.++.++++++.....  +++|++||.....+......|+.||.+.+.+.+.++
T Consensus        78 Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asKaa~~~~~~~la  155 (244)
T 4e4y_A           78 AGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFIAKPNSFAYTLSKGAIAQMTKSLA  155 (244)
T ss_dssp             CCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTCCCTTBHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHccCCCCCchhHHHHHHHHHHHHHHH
Confidence            99643          1245789999999999999876422  489999994333344556789999999999988764

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=99.85  E-value=5.7e-21  Score=148.93  Aligned_cols=135  Identities=19%  Similarity=0.224  Sum_probs=105.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~~  128 (202)
                      +|+++||||+|+||++++++|+++|++|++++|+.++.....   ++.++.+|++| +++.++++       ++|++|||
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~---~~~~~~~D~~~-~~~~~~~~~~~~~~g~id~lv~~   77 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEEAAQSL---GAVPLPTDLEK-DDPKGLVKRALEALGGLHVLVHA   77 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHH---TCEEEECCTTT-SCHHHHHHHHHHHHTSCCEEEEC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhh---CcEEEecCCch-HHHHHHHHHHHHHcCCCCEEEEC
Confidence            578999999999999999999999999999999865421111   37889999999 77666554       69999999


Q ss_pred             cccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcC-CcCCcchHHHHHHHHHHHHH
Q 028890          129 VGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVA-NYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       129 a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~-~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||...          .+...+++|+.++.++.+++    ++.+.++||++|| ..+... ..+...|+.+|.+.+.+.+.
T Consensus        78 Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~sK~a~~~~~~~  157 (239)
T 2ekp_A           78 AAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWGRVLFIGSVTTFTAGGPVPIPAYTTAKTALLGLTRA  157 (239)
T ss_dssp             CCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECchhhccCCCCCCCccHHHHHHHHHHHHHH
Confidence            99642          12456789999999888776    4456789999999 444322 25567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       158 la  159 (239)
T 2ekp_A          158 LA  159 (239)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=99.85  E-value=6.7e-21  Score=150.02  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEec-CCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSR-SGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r-~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++| +.+....     .....++.++.+|++|++++.++++       
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEFG   84 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            35689999999999999999999999999999999 4322100     0113568899999999999888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|+||||||....          +...+++|+.++.++++++.    +.+ .++||++||.....+..+...|+.+|.+
T Consensus        85 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a  164 (261)
T 1gee_A           85 KLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKGG  164 (261)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEeCCHHhcCCCCCccHHHHHHHH
Confidence            78999999996431          23467899999998877764    334 5799999994333344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.+.
T Consensus       165 ~~~~~~~la  173 (261)
T 1gee_A          165 MKLMTETLA  173 (261)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998887753

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=99.85  E-value=9.3e-21  Score=149.99  Aligned_cols=141  Identities=12%  Similarity=0.067  Sum_probs=110.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------c-cCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~-~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      . ....++.++.+|++|++++.++++      
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERTL   85 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            467899999999999999999999999999999997543111      1 112358999999999998887765      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...          .+...+++|+.++.++.+++..    .+.++||++||.....+......|+.+|.+
T Consensus        86 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  165 (265)
T 3lf2_A           86 GCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADAAIVCVNSLLASQPEPHMVATSAARAG  165 (265)
T ss_dssp             CSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEEEEGGGTSCCTTBHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEECCcccCCCCCCchhhHHHHHH
Confidence             6899999999643          1245789999999999888743    445689999994333344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       166 ~~~l~~~la  174 (265)
T 3lf2_A          166 VKNLVRSMA  174 (265)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=99.85  E-value=4.7e-21  Score=152.99  Aligned_cols=142  Identities=13%  Similarity=0.156  Sum_probs=106.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++      
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  105 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEF  105 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3467899999999999999999999999999999975432111      1124578999999999999888776      


Q ss_pred             -CccEeEEccccCC------------CCccchhhhHHHHHHHHHHHHH----cC---CCEEEEEeccccCcCCcCCcchH
Q 028890          121 -GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE----KG---VKRFVYISAADFGVANYLLQGYY  180 (202)
Q Consensus       121 -~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~~----~~---~~~~v~~SS~~~~~~~~~~~~Y~  180 (202)
                       ++|++|||||...            .+...+++|+.++.++.+++..    .+   .++||++||...-.+......|+
T Consensus       106 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~  185 (280)
T 4da9_A          106 GRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASRSIINITSVSAVMTSPERLDYC  185 (280)
T ss_dssp             SCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCC-------CCHHHH
T ss_pred             CCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCCEEEEEcchhhccCCCCccHHH
Confidence             7899999999721            1345778999999988887643    23   45999999943223344567899


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .+|.+.+.+.+.++
T Consensus       186 asKaa~~~l~~~la  199 (280)
T 4da9_A          186 MSKAGLAAFSQGLA  199 (280)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=99.85  E-value=5.1e-21  Score=151.05  Aligned_cols=141  Identities=13%  Similarity=0.086  Sum_probs=111.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|+++.++......      .....++.++.+|++|+++++++++       
T Consensus         6 l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (259)
T 3edm_A            6 FTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG   85 (259)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999998555433111      1224578999999999999888776       


Q ss_pred             CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHHHHcCC--CEEEEEec-cccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAASEKGV--KRFVYISA-ADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~~~--~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||...           .+...+++|+.++.++.+++.....  ++||++|| ..+..+......|+.+|.+.
T Consensus        86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~  165 (259)
T 3edm_A           86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGRDGGGPGALAYATSKGAV  165 (259)
T ss_dssp             SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHCCSTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhccCCCCCcHHHHHHHHHH
Confidence            6899999998541           1245689999999999999876532  48999999 43323445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       166 ~~l~~~la  173 (259)
T 3edm_A          166 MTFTRGLA  173 (259)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=99.85  E-value=3.1e-21  Score=152.02  Aligned_cols=141  Identities=13%  Similarity=0.114  Sum_probs=111.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|++|+++++++++       ++|+
T Consensus         6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   85 (255)
T 4eso_A            6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAIDL   85 (255)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCCE
Confidence            467899999999999999999999999999999998543111  1123578999999999998887665       6899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      +|||||...          .+...+++|+.++.++.+++...  ..++||++||...-.+.++...|+.+|.+.+.+.+.
T Consensus        86 lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~~  165 (255)
T 4eso_A           86 LHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEGGHPGMSVYSASKAALVSFASV  165 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSSBCTTBHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcCCCCCchHHHHHHHHHHHHHHH
Confidence            999999643          12456899999999999998763  235899999943333445567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       166 la  167 (255)
T 4eso_A          166 LA  167 (255)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=99.85  E-value=5.9e-21  Score=156.29  Aligned_cols=126  Identities=24%  Similarity=0.327  Sum_probs=105.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc--CccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~  127 (202)
                      +++|+||||||+||++++++|+++|++|++++|+......      .....+++++.+|+.|++++.++++  ++|+|||
T Consensus        10 ~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~   89 (346)
T 3i6i_A           10 KGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVS   89 (346)
T ss_dssp             -CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEE
Confidence            5799999999999999999999999999999998632111      1123689999999999999999999  9999999


Q ss_pred             ccccCCCCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC------CcCCcchHHHHHHHHHHHHHh
Q 028890          128 CVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA------NYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       128 ~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~------~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      +++.         .|+.++.+++++|++.+ +++||+ |+  ||..      ..+..+|+.+|+.+|++++.+
T Consensus        90 ~a~~---------~n~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~e~~~~~p~~~y~~sK~~~e~~l~~~  150 (346)
T 3i6i_A           90 TVGG---------ESILDQIALVKAMKAVGTIKRFLP-SE--FGHDVNRADPVEPGLNMYREKRRVRQLVEES  150 (346)
T ss_dssp             CCCG---------GGGGGHHHHHHHHHHHCCCSEEEC-SC--CSSCTTTCCCCTTHHHHHHHHHHHHHHHHHT
T ss_pred             CCch---------hhHHHHHHHHHHHHHcCCceEEee-cc--cCCCCCccCcCCCcchHHHHHHHHHHHHHHc
Confidence            9987         37888899999999999 999987 54  3322      234568999999999999874

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=99.85  E-value=3e-21  Score=151.69  Aligned_cols=141  Identities=12%  Similarity=0.063  Sum_probs=108.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------cc--CCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      ..  ...++.++.+|++|+++++++++     
T Consensus         5 ~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            5 KQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999998643111      01  12578899999999998888775     


Q ss_pred             --CccEeEEccccCCC---------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 --GVTAVISCVGGFGS---------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 --~~d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                        ++|++|||||....         +...+++|+.++.++.+++    ++.+.+++|++||.....+..+...|+.+|.+
T Consensus        85 ~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  164 (250)
T 3nyw_A           85 YGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNGYIFNVASRAAKYGFADGGIYGSTKFA  164 (250)
T ss_dssp             HCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECC-------CCTTHHHHHHHH
T ss_pred             cCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEccHHhcCCCCCCcchHHHHHH
Confidence              58999999996432         2457789999999888877    44566799999993222223336789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       165 ~~~l~~~la  173 (250)
T 3nyw_A          165 LLGLAESLY  173 (250)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.85  E-value=3.8e-21  Score=152.50  Aligned_cols=142  Identities=16%  Similarity=0.146  Sum_probs=109.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      +.++++++||||+|+||++++++|+++|++|++++++......      .....++.++.+|++|+++++++++      
T Consensus        22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (269)
T 3gk3_A           22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDHVSTWLMHERDAGRDFKAYAVDVADFESCERCAEKVLADF  101 (269)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHHHHTTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            3467899999999999999999999999999999865432111      1224578999999999999888776      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||....          +...+++|+.++.++++++.    +.+.++||++||...-.+......|+.+|.+
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  181 (269)
T 3gk3_A          102 GKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFGRIVNIGSVNGSRGAFGQANYASAKAG  181 (269)
T ss_dssp             SCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHHHHHHH
T ss_pred             CCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEeCChhhccCCCCcchHHHHHHH
Confidence             68999999996431          24567899999998888764    3556799999993222234456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+++.++
T Consensus       182 ~~~~~~~la  190 (269)
T 3gk3_A          182 IHGFTKTLA  190 (269)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            998888753

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=99.85  E-value=4.2e-21  Score=150.64  Aligned_cols=141  Identities=14%  Similarity=0.146  Sum_probs=109.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecC-CCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS-GRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~-~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+ ......     .....++.++.+|++|++++.++++       
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g   84 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASMRADGGDAAFFAADLATSEACQQLVDEFVAKFG   84 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999999999999999999999999998 433111     0113578999999999999988887       


Q ss_pred             CccEeEEcccc-CCC----------CccchhhhHHHHHHHHHHHHH----cC--C---CEEEEEecc-ccCcCCcCCcch
Q 028890          121 GVTAVISCVGG-FGS----------NSYMYKINGTANINAIRAASE----KG--V---KRFVYISAA-DFGVANYLLQGY  179 (202)
Q Consensus       121 ~~d~vi~~a~~-~~~----------~~~~~~~n~~~~~~~~~~~~~----~~--~---~~~v~~SS~-~~~~~~~~~~~Y  179 (202)
                      ++|+||||||. ...          +...+++|+.++.++++++..    .+  .   ++||++||. .+..+..+...|
T Consensus        85 ~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~Y  164 (258)
T 3afn_B           85 GIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVISTGSIAGHTGGGPGAGLY  164 (258)
T ss_dssp             SCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEEECCTHHHHCCCTTCHHH
T ss_pred             CCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEEecchhhccCCCCCchHH
Confidence            79999999996 221          234678999999988886632    22  2   699999983 332234556789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.|.+++.+.
T Consensus       165 ~~sK~a~~~~~~~~~  179 (258)
T 3afn_B          165 GAAKAFLHNVHKNWV  179 (258)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988763

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=99.85  E-value=8.1e-21  Score=148.48  Aligned_cols=141  Identities=15%  Similarity=0.128  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCCceeEEEccC--CCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNL--LSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~~~~~~~~D~--~~~~~~~~~~~-----  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.....      ......+..++.+|+  .|++++.++++     
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~~   91 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEHE   91 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHHh
Confidence            46789999999999999999999999999999999854311      111224677788877  88888777665     


Q ss_pred             --CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 --GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 --~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                        ++|++|||||....           +...+++|+.++.++++++    ++.+.+++|++||.....+......|+.+|
T Consensus        92 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK  171 (247)
T 3i1j_A           92 FGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDASIAFTSSSVGRKGRANWGAYGVSK  171 (247)
T ss_dssp             HSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             CCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEEcchhhcCCCCCcchhHHHH
Confidence              68999999996421           2356789999999998887    445557999999943333445567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+.+.++
T Consensus       172 ~a~~~~~~~la  182 (247)
T 3i1j_A          172 FATEGLMQTLA  182 (247)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=99.85  E-value=2.1e-20  Score=148.66  Aligned_cols=141  Identities=15%  Similarity=0.155  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------------ccCCCceeEEEccCCCHhhHHHHhc-
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------------DSWANNVIWHQGNLLSSDSWKEALD-  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------------~~~~~~~~~~~~D~~~~~~~~~~~~-  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......            .....++.++.+|++|++++.++++ 
T Consensus         4 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~   83 (274)
T 3e03_A            4 LSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLPGTIHSAAAAVNAAGGQGLALKCDIREEDQVRAAVAA   83 (274)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSCCCHHHHHHHHHHHTSEEEEEECCTTCHHHHHHHHHH
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHH
Confidence            467899999999999999999999999999999998654111            0114578899999999999888776 


Q ss_pred             ------CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEecc-ccCcC-CcCCcc
Q 028890          121 ------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAA-DFGVA-NYLLQG  178 (202)
Q Consensus       121 ------~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~-~~~~~-~~~~~~  178 (202)
                            ++|++|||||...          .+...+++|+.++.++.+++..    .+.++||++||. .+... ......
T Consensus        84 ~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~~~  163 (274)
T 3e03_A           84 TVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNPHILTLAPPPSLNPAWWGAHTG  163 (274)
T ss_dssp             HHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSCEEEECCCCCCCCHHHHHHCHH
T ss_pred             HHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCceEEEECChHhcCCCCCCCCch
Confidence                  6899999999643          1245678999999988888643    456799999993 33221 234567


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.||.+.+.+.+.++
T Consensus       164 Y~asKaal~~l~~~la  179 (274)
T 3e03_A          164 YTLAKMGMSLVTLGLA  179 (274)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988764

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=99.85  E-value=4.9e-21  Score=149.79  Aligned_cols=141  Identities=13%  Similarity=0.066  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       +
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            357899999999999999999999999999999997643111     1124578999999999999888775       4


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|++|||||....          +...+++|+.++.++.+++.    +.+.++||++||.....+.+....|+.+|.+.+
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~  162 (247)
T 3lyl_A           83 IDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWGRIISIGSVVGSAGNPGQTNYCAAKAGVI  162 (247)
T ss_dssp             CSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCeEEEEEcchhhccCCCCcHHHHHHHHHHH
Confidence            7999999996532          24577899999998888764    345579999999422233445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       163 ~~~~~la  169 (247)
T 3lyl_A          163 GFSKSLA  169 (247)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888754

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=99.85  E-value=4.1e-21  Score=150.76  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=102.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....     .....++.++.+|++|+++++++++       +
T Consensus         7 ~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   86 (253)
T 3qiv_A            7 FENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG   86 (253)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            467899999999999999999999999999999997543111     1124578899999999999888776       7


Q ss_pred             ccEeEEccccCC-------------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcchHHHH
Q 028890          122 VTAVISCVGGFG-------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQGYYEGK  183 (202)
Q Consensus       122 ~d~vi~~a~~~~-------------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK  183 (202)
                      +|++|||||...             .+...+++|+.++.++.+++    ++.+.++||++|| ..+    .+...|+.+|
T Consensus        87 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~----~~~~~Y~asK  162 (253)
T 3qiv_A           87 IDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGGAIVNQSSTAAW----LYSNYYGLAK  162 (253)
T ss_dssp             CCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC---------------CCH
T ss_pred             CCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCEEEEECCcccc----CCCchhHHHH
Confidence            899999999632             12357789999977666554    4556679999999 333    3456799999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       163 ~a~~~~~~~la  173 (253)
T 3qiv_A          163 VGINGLTQQLS  173 (253)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=99.85  E-value=6.1e-21  Score=151.20  Aligned_cols=141  Identities=14%  Similarity=0.167  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------c-cCCCceeEEEccCCCHhhHHHHhc---Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D-SWANNVIWHQGNLLSSDSWKEALD---GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~-~~~~~~~~~~~D~~~~~~~~~~~~---~~d  123 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      . .....+.++.+|++|+++++++++   ++|
T Consensus         8 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id   87 (267)
T 3t4x_A            8 LKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPKVD   87 (267)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCCCS
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            467899999999999999999999999999999998543111      0 113467889999999999888776   689


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++|||||....          +...+++|+.++.++.+++    ++.+.++||++||...-.+......|+.+|.+.+.+
T Consensus        88 ~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~l  167 (267)
T 3t4x_A           88 ILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEGRVIFIASEAAIMPSQEMAHYSATKTMQLSL  167 (267)
T ss_dssp             EEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCEEEEEcchhhccCCCcchHHHHHHHHHHHH
Confidence            99999996431          2345799999988776655    445667999999943333445568899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       168 ~~~la  172 (267)
T 3t4x_A          168 SRSLA  172 (267)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98864

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=99.85  E-value=1e-20  Score=150.69  Aligned_cols=140  Identities=16%  Similarity=0.131  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c-cCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D-SWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~-~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.+....   . ....++.++.+|++|+++++++++       ++
T Consensus        27 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  106 (276)
T 2b4q_A           27 LAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARL  106 (276)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence            467899999999999999999999999999999997543110   0 111268889999999998888776       68


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCC----CEEEEEec-cccCcCCcCCc-chHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGV----KRFVYISA-ADFGVANYLLQ-GYYEG  182 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~----~~~v~~SS-~~~~~~~~~~~-~Y~~s  182 (202)
                      |++|||||....          +...+++|+.++.++.+++.    +.+.    ++||++|| ..+.. ..... .|+.+
T Consensus       107 D~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g~iV~isS~~~~~~-~~~~~~~Y~as  185 (276)
T 2b4q_A          107 DILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISA-MGEQAYAYGPS  185 (276)
T ss_dssp             SEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCEEEEEECCGGGTCC-CCCSCTTHHHH
T ss_pred             CEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCCEEEEECCHHHcCC-CCCCccccHHH
Confidence            999999995421          23577899999987777653    3444    79999999 33332 23345 89999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+.+.
T Consensus       186 K~a~~~~~~~la  197 (276)
T 2b4q_A          186 KAALHQLSRMLA  197 (276)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=99.85  E-value=2.8e-20  Score=144.66  Aligned_cols=130  Identities=16%  Similarity=0.238  Sum_probs=97.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .++|+|+||||+|+||++++++|+++| ++|++++|++.+. ......+++++.+|+.|++++.++++++|+||||++..
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~-~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~   99 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI-HKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGE   99 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS-CSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCST
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh-cccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCC
Confidence            357899999999999999999999999 8999999986543 22334689999999999999999999999999999862


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCcC--------CcchHHHHHHHHHHHHH
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANYL--------LQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~~--------~~~Y~~sK~~~E~~~~~  192 (202)
                      .        ....+.++++++++.++++||++|| .+|+..+..        ...+...+..+|..++.
T Consensus       100 ~--------~~~~~~~~~~~~~~~~~~~iV~iSS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  160 (236)
T 3qvo_A          100 D--------LDIQANSVIAAMKACDVKRLIFVLSLGIYDEVPGKFVEWNNAVIGEPLKPFRRAADAIEA  160 (236)
T ss_dssp             T--------HHHHHHHHHHHHHHTTCCEEEEECCCCC----------------CGGGHHHHHHHHHHHT
T ss_pred             c--------hhHHHHHHHHHHHHcCCCEEEEEecceecCCCCcccccchhhcccchHHHHHHHHHHHHH
Confidence            1        1234668899999999999999999 555543221        11233445556666654

>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans}

Probab=99.85  E-value=3.5e-21  Score=151.71  Aligned_cols=140  Identities=17%  Similarity=0.176  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc------CccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~vi~  127 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..+. ......++.++.+|++|++++.++++      ++|++||
T Consensus         7 l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~g~id~lv~   85 (257)
T 3tl3_A            7 IRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGEDV-VADLGDRARFAAADVTDEAAVASALDLAETMGTLRIVVN   85 (257)
T ss_dssp             ---CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHHH-HHHTCTTEEEEECCTTCHHHHHHHHHHHHHHSCEEEEEE
T ss_pred             ecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHHH-HHhcCCceEEEECCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            4678999999999999999999999999999999964332 22234688999999999999888876      7999999


Q ss_pred             ccccCC--------------CCccchhhhHHHHHHHHHHHHHc------------CCCEEEEEeccccCcCCcCCcchHH
Q 028890          128 CVGGFG--------------SNSYMYKINGTANINAIRAASEK------------GVKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       128 ~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~------------~~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                      |||...              .+...+++|+.++.++.+++...            +.++||++||...-.+......|+.
T Consensus        86 nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  165 (257)
T 3tl3_A           86 CAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEERGVIINTASVAAFDGQIGQAAYSA  165 (257)
T ss_dssp             CGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCCSEEEEEECCCC--CCHHHHHHHHH
T ss_pred             CCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCCCcEEEEEcchhhcCCCCCCccHHH
Confidence            999532              13567899999999998887542            3358999999422223344568999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      ||.+.+.+.+.++
T Consensus       166 sKaa~~~~~~~la  178 (257)
T 3tl3_A          166 SKGGVVGMTLPIA  178 (257)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998888753

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.85  E-value=8.5e-21  Score=151.30  Aligned_cols=140  Identities=13%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCC---ceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWAN---NVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~---~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....   ++.++.+|++|+++++++++     
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999997543111     01112   68899999999998888776     


Q ss_pred             --CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEecc-ccCcCCcCCcch
Q 028890          121 --GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAA-DFGVANYLLQGY  179 (202)
Q Consensus       121 --~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~-~~~~~~~~~~~Y  179 (202)
                        ++|++|||||....              +...+++|+.++.++++++..    .+ ++||++||. .+.....+...|
T Consensus        84 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~~Y  162 (280)
T 1xkq_A           84 FGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPDFLYY  162 (280)
T ss_dssp             HSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCSSHHH
T ss_pred             cCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-CcEEEecCccccCCCCCcccHH
Confidence              68999999996421              234678899999988887753    34 799999993 333222556789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.+.+.+.++
T Consensus       163 ~asK~a~~~~~~~la  177 (280)
T 1xkq_A          163 AIAKAALDQYTRSTA  177 (280)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=99.84  E-value=6e-21  Score=150.80  Aligned_cols=141  Identities=14%  Similarity=0.095  Sum_probs=108.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++       +
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~   84 (262)
T 1zem_A            5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   84 (262)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHhCC
Confidence            457899999999999999999999999999999997543110     1113468899999999998887765       6


Q ss_pred             ccEeEEccccC-C----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGF-G----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~-~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||.. .          ++...+++|+.++.++++++.+    .+.++||++||...-.+......|+.+|.+.
T Consensus        85 id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  164 (262)
T 1zem_A           85 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAI  164 (262)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCcEEEEEcchhhccCCCCCchHHHHHHHH
Confidence            89999999964 2          1245678999999988887643    4567999999932112234457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       165 ~~~~~~la  172 (262)
T 1zem_A          165 IALTETAA  172 (262)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98888753

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=99.84  E-value=5.5e-21  Score=153.63  Aligned_cols=141  Identities=12%  Similarity=0.009  Sum_probs=109.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c---cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D---SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~---~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......   .   ....++.++.+|++|++++.++++       
T Consensus        24 l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g  103 (302)
T 1w6u_A           24 FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG  103 (302)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999997543111   0   013578999999999999888776       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|+||||||...          .+...+++|+.++.++++++.+     .+.++||++||.....+..+...|+.+|.+
T Consensus       104 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a  183 (302)
T 1w6u_A          104 HPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKAG  183 (302)
T ss_dssp             SCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCEEEEEcccccccCCCCcchhHHHHHH
Confidence            4699999999532          1245678999999988887743     345699999994222234456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .|.+++.+.
T Consensus       184 ~~~~~~~la  192 (302)
T 1w6u_A          184 VEAMSKSLA  192 (302)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=99.84  E-value=6.1e-21  Score=151.52  Aligned_cols=141  Identities=13%  Similarity=0.141  Sum_probs=109.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+...... .....++.++.+|++|+++++++++       ++|++
T Consensus         7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   86 (270)
T 1yde_A            7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   86 (270)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            467899999999999999999999999999999997543111 0111357899999999999888776       68999


Q ss_pred             EEccccCCC-----------CccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFGS-----------NSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||....           +...+++|+.++.++++++..   .+.++||++||.....+......|+.+|.+.+.+.+
T Consensus        87 v~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~~~~  166 (270)
T 1yde_A           87 VNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQGNVINISSLVGAIGQAQAVPYVATKGAVTAMTK  166 (270)
T ss_dssp             EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCEEEEEcCccccCCCCCCcccHHHHHHHHHHHH
Confidence            999996431           245678999999999888753   124799999993211223445789999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       167 ~la  169 (270)
T 1yde_A          167 ALA  169 (270)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=99.84  E-value=6.7e-21  Score=151.23  Aligned_cols=141  Identities=16%  Similarity=0.107  Sum_probs=111.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       
T Consensus        27 l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  106 (271)
T 4iin_A           27 FTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNELEEKGYKAAVIKFDAASESDFIEAIQTIVQSDG  106 (271)
T ss_dssp             CSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHhcC
Confidence            467899999999999999999999999999999996543211      1124578999999999998888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||....          +...+++|+.++.++.+++    ++.+.++||++||.....+..+...|+.+|.+.
T Consensus       107 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~  186 (271)
T 4iin_A          107 GLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFGSVVNVASIIGERGNMGQTNYSASKGGM  186 (271)
T ss_dssp             SCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCCEEEEEechhhcCCCCCchHhHHHHHHH
Confidence            68999999996532          2456789999998877766    345667999999932223345567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.++
T Consensus       187 ~~~~~~la  194 (271)
T 4iin_A          187 IAMSKSFA  194 (271)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=99.84  E-value=6.2e-21  Score=150.10  Aligned_cols=142  Identities=13%  Similarity=-0.010  Sum_probs=111.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++|+++||||+++||+++++.|+++|++|++.+|+.+...+     .....++..+.+|++|+++++++++       
T Consensus         6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            4688999999999999999999999999999999997543111     1224578899999999999887775       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HH-cCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SE-KGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~-~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      ++|++|||||...          +|+..+++|+.+++.+.+++    .+ .+.+++|++||...-.+.+....|+.+|.+
T Consensus        86 ~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaa  165 (255)
T 4g81_D           86 HVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLTSQAARPTVAPYTAAKGG  165 (255)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSBCTTCHHHHHHHHH
T ss_pred             CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehhhcCCCCCchhHHHHHHH
Confidence            5899999999643          34567899999999877765    22 345699999994333344456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      ...+.+.++
T Consensus       166 l~~ltr~lA  174 (255)
T 4g81_D          166 IKMLTCSMA  174 (255)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=99.84  E-value=3.4e-21  Score=150.21  Aligned_cols=139  Identities=17%  Similarity=0.157  Sum_probs=107.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      +|+++||||+|+||++++++|+++|++|+++ .|+......     .....++.++.+|++|+++++++++       ++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   80 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTI   80 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence            4789999999999999999999999999985 666432110     0113578899999999999988876       68


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |++|||||....          +...+++|+.++.++++++.+    .+.++||++||...-.+..+...|+.+|.+.+.
T Consensus        81 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~  160 (244)
T 1edo_A           81 DVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIG  160 (244)
T ss_dssp             SEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCEEEEECChhhcCCCCCCccchhhHHHHHH
Confidence            999999996432          234678999999988887754    466799999993211223456789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.+.
T Consensus       161 ~~~~la  166 (244)
T 1edo_A          161 FSKTAA  166 (244)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            888753

>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*

Probab=99.84  E-value=4.5e-21  Score=150.69  Aligned_cols=131  Identities=11%  Similarity=0.003  Sum_probs=105.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC----ccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG----VTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----~d~vi~~a~~  131 (202)
                      ||+++||||+|+||++++++|+++|++|++++|+..+...       . +.+|++|+++++++++.    +|++|||||.
T Consensus         1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~-------~-~~~Dl~~~~~v~~~~~~~~~~id~lv~~Ag~   72 (257)
T 1fjh_A            1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIA-------D-LSTAEGRKQAIADVLAKCSKGMDGLVLCAGL   72 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSEEC-------C-TTSHHHHHHHHHHHHTTCTTCCSEEEECCCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhhcc-------c-cccCCCCHHHHHHHHHHhCCCCCEEEECCCC
Confidence            4689999999999999999999999999999998654211       1 67899999999998864    5999999996


Q ss_pred             CC---CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEec-cccC---------------------------cCCcCC
Q 028890          132 FG---SNSYMYKINGTANINAIRAAS----EKGVKRFVYISA-ADFG---------------------------VANYLL  176 (202)
Q Consensus       132 ~~---~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS-~~~~---------------------------~~~~~~  176 (202)
                      ..   .+...+++|+.++.++++++.    +.+.++||++|| ..+.                           .+..+.
T Consensus        73 ~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (257)
T 1fjh_A           73 GPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGEQGGN  152 (257)
T ss_dssp             CTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCTTHHH
T ss_pred             CCCcccHHHHHHHhhHHHHHHHHHHHHHHhhcCCcEEEEECChhhhccccccchhhhhhcccchhhhhhhhhcccCCCCc
Confidence            44   356788999999999888875    445679999999 4441                           122244


Q ss_pred             cchHHHHHHHHHHHHHhc
Q 028890          177 QGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       177 ~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..|+.||.+.+.+++.++
T Consensus       153 ~~Y~~sK~a~~~~~~~la  170 (257)
T 1fjh_A          153 LAYAGSKNALTVAVRKRA  170 (257)
T ss_dssp             HHHHHHHHHHHHHHHHTH
T ss_pred             cHHHHHHHHHHHHHHHHH
Confidence            679999999999988764

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=99.84  E-value=8.9e-21  Score=148.01  Aligned_cols=136  Identities=16%  Similarity=0.139  Sum_probs=108.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.....     ....++.+|++|++++.++++         ++|+
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~v~~~~~~~~~~~~~g~iD~   79 (241)
T 1dhr_A            5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDA   79 (241)
T ss_dssp             -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhcc-----CCcEEEEcCCCCHHHHHHHHHHHHHHhCCCCCCE
Confidence            45789999999999999999999999999999999865421     245778899999998887765         6899


Q ss_pred             eEEccccCCC-----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          125 VISCVGGFGS-----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       125 vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      +|||||....           +...+++|+.++.++.+++.+.  ..++||++||.....+..+...|+.+|.+.+.+.+
T Consensus        80 lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~  159 (241)
T 1dhr_A           80 ILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQ  159 (241)
T ss_dssp             EEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHH
T ss_pred             EEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHHccCCCCchHHHHHHHHHHHHHH
Confidence            9999996421           2346789999999999988663  12599999993222234456789999999999999


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       160 ~la  162 (241)
T 1dhr_A          160 SLA  162 (241)
T ss_dssp             HHT
T ss_pred             HHH
Confidence            875

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=99.84  E-value=6.4e-21  Score=151.76  Aligned_cols=142  Identities=18%  Similarity=0.206  Sum_probs=110.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----------cc------ccCCCceeEEEccCCCHhhH
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------LR------DSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----------~~------~~~~~~~~~~~~D~~~~~~~  115 (202)
                      +.++|+++||||+|+||++++++|+++|++|++++|+....           ..      .....++.++.+|++|++++
T Consensus        10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   89 (278)
T 3sx2_A           10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRESL   89 (278)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHHH
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHHH
Confidence            35788999999999999999999999999999999873210           00      11235789999999999999


Q ss_pred             HHHhc-------CccEeEEccccCC------CCccchhhhHHHHHHHHHHHH----HcC-CCEEEEEec-ccc-Cc--CC
Q 028890          116 KEALD-------GVTAVISCVGGFG------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISA-ADF-GV--AN  173 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS-~~~-~~--~~  173 (202)
                      +++++       ++|++|||||...      .+...+++|+.++.++++++.    +.+ .++||++|| ..+ +.  ..
T Consensus        90 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~  169 (278)
T 3sx2_A           90 SAALQAGLDELGRLDIVVANAGIAPMSAGDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAGLAGVGSAD  169 (278)
T ss_dssp             HHHHHHHHHHHCCCCEEEECCCCCCCSSTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGGTSCCCCSS
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHhcCCCccCC
Confidence            88876       7899999999653      235678999999999888864    333 469999999 332 21  11


Q ss_pred             cCCcchHHHHHHHHHHHHHhc
Q 028890          174 YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .....|+.+|.+.+.+.+.++
T Consensus       170 ~~~~~Y~asKaa~~~~~~~la  190 (278)
T 3sx2_A          170 PGSVGYVAAKHGVVGLMRVYA  190 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCchHhHHHHHHHHHHHHHHH
Confidence            344679999999999988764

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=99.84  E-value=6.8e-21  Score=149.06  Aligned_cols=141  Identities=16%  Similarity=0.194  Sum_probs=108.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......    .....++.++.+|++|++++.++++       ++
T Consensus         4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   83 (251)
T 1zk4_A            4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCC
Confidence            457899999999999999999999999999999997543111    0111578999999999999888776       48


Q ss_pred             cEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCC-CEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGV-KRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |+||||||....          +...+++|+.++.++.+++    ++.+. ++||++||...-.+..+...|+.+|.+.|
T Consensus        84 d~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~~sK~a~~  163 (251)
T 1zk4_A           84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVR  163 (251)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred             CEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchhccCCCCCccchHHHHHHH
Confidence            999999996421          2346789999887665554    45565 79999999322223345678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       164 ~~~~~~a  170 (251)
T 1zk4_A          164 IMSKSAA  170 (251)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=99.84  E-value=2e-20  Score=150.35  Aligned_cols=142  Identities=14%  Similarity=0.069  Sum_probs=111.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-c------cccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-L------RDSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-~------~~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.... .      ......++.++.+|++|+++++++++     
T Consensus        46 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  125 (294)
T 3r3s_A           46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREA  125 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999999999999998863321 0      11124578899999999998887765     


Q ss_pred             --CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHHcCC--CEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 --GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEKGV--KRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 --~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~~~--~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                        ++|++|||||....           +...+++|+.++.++++++.....  ++||++||...-.+......|+.+|.+
T Consensus       126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa  205 (294)
T 3r3s_A          126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAA  205 (294)
T ss_dssp             HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhhccCCCCchHHHHHHHH
Confidence              68999999996431           245789999999999999976543  499999994322334556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       206 ~~~l~~~la  214 (294)
T 3r3s_A          206 ILNYSRGLA  214 (294)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=99.84  E-value=3.5e-21  Score=150.10  Aligned_cols=139  Identities=15%  Similarity=0.135  Sum_probs=103.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEE-ecCCCCccc-----ccCCCceeE-EEccCCCHhhHHHHhc-------C
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASL-SRSGRSSLR-----DSWANNVIW-HQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~r~~~~~~~-----~~~~~~~~~-~~~D~~~~~~~~~~~~-------~  121 (202)
                      +|+++||||+|+||++++++|+++|++|+++ +|+.+....     .....++.+ +.+|++|+++++++++       +
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEARRRGSPLVAVLGANLLEAEAATALVHQAAEVLGG   80 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCceEEEEeccCCCHHHHHHHHHHHHHhcCC
Confidence            4789999999999999999999999999998 676432110     011245666 8999999998888764       7


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHH----HHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIR----AASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      +|+||||||....          +...+++|+.++.++.+    .+++.+.++||++||...-.+..+...|+.+|.+.+
T Consensus        81 ~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~  160 (245)
T 2ph3_A           81 LDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFGRIVNITSVVGILGNPGQANYVASKAGLI  160 (245)
T ss_dssp             CCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCSSBHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCEEEEEeChhhccCCCCCcchHHHHHHHH
Confidence            9999999996431          23567899999665555    455567789999999321112344578999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.+.
T Consensus       161 ~~~~~la  167 (245)
T 2ph3_A          161 GFTRAVA  167 (245)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888753

>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}

Probab=99.84  E-value=8.8e-21  Score=150.56  Aligned_cols=142  Identities=16%  Similarity=0.175  Sum_probs=107.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      +.++++++||||+|+||++++++|+++|++|+++.++......      .....++.++.+|++|+++++++++      
T Consensus        23 m~~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  102 (272)
T 4e3z_A           23 MSDTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREAADAVVAAITESGGEAVAIPGDVGNAADIAAMFSAVDRQF  102 (272)
T ss_dssp             -CCSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhC
Confidence            3457899999999999999999999999999887443322111      1124578999999999998888776      


Q ss_pred             -CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHHc-------CCCEEEEEec-cccCcCCcCCcchH
Q 028890          121 -GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASEK-------GVKRFVYISA-ADFGVANYLLQGYY  180 (202)
Q Consensus       121 -~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~~-------~~~~~v~~SS-~~~~~~~~~~~~Y~  180 (202)
                       ++|++|||||....           +...+++|+.++.++++++...       +.++||++|| ..+.........|+
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~Y~  182 (272)
T 4e3z_A          103 GRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSMAAILGSATQYVDYA  182 (272)
T ss_dssp             SCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCTHHHHCCTTTCHHHH
T ss_pred             CCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcchHhccCCCCCcchhH
Confidence             68999999996432           2356789999999988887543       3458999999 33333333456799


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .+|.+.+.+++.+.
T Consensus       183 asKaa~~~~~~~la  196 (272)
T 4e3z_A          183 ASKAAIDTFTIGLA  196 (272)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999888764

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=99.84  E-value=1.2e-20  Score=151.85  Aligned_cols=142  Identities=18%  Similarity=0.182  Sum_probs=106.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCCceeEEEccCCCH-hhHHHHhc-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSS-DSWKEALD-----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~~~~~~~~D~~~~-~~~~~~~~-----  120 (202)
                      +.++++++||||+|+||++++++|+++|++|++++|+..+..      ......++.++.+|++|+ +++.++++     
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~   88 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTH   88 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHh
Confidence            346789999999999999999999999999999999864311      112235789999999998 77766654     


Q ss_pred             --CccEeEEccccCCC----------------------------------------CccchhhhHHHHHHHHHHHH----
Q 028890          121 --GVTAVISCVGGFGS----------------------------------------NSYMYKINGTANINAIRAAS----  154 (202)
Q Consensus       121 --~~d~vi~~a~~~~~----------------------------------------~~~~~~~n~~~~~~~~~~~~----  154 (202)
                        ++|++|||||....                                        +...+++|+.|+.++++++.    
T Consensus        89 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~  168 (311)
T 3o26_A           89 FGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKINYNGVKSVTEVLIPLLQ  168 (311)
T ss_dssp             HSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeeeeehHHHHHHHhhHhhc
Confidence              79999999997531                                        12347899999998888764    


Q ss_pred             HcCCCEEEEEec-cccCcC------------------------------------------CcCCcchHHHHHHHHHHHH
Q 028890          155 EKGVKRFVYISA-ADFGVA------------------------------------------NYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       155 ~~~~~~~v~~SS-~~~~~~------------------------------------------~~~~~~Y~~sK~~~E~~~~  191 (202)
                      +.+.++||++|| ..+...                                          +.+...|+.||.+.+.+.+
T Consensus       169 ~~~~~~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~  248 (311)
T 3o26_A          169 LSDSPRIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIETNGWPSFGAAYTTSKACLNAYTR  248 (311)
T ss_dssp             TSSSCEEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTTTTCCSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhccccccccCcccchhhHHHHHHHHHHHH
Confidence            345579999999 322111                                          1234679999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       249 ~la  251 (311)
T 3o26_A          249 VLA  251 (311)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            764

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=99.84  E-value=1.1e-20  Score=148.93  Aligned_cols=141  Identities=18%  Similarity=0.218  Sum_probs=108.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|+++++++++       
T Consensus        12 ~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~   91 (265)
T 1h5q_A           12 FVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLG   91 (265)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHHHHHHHhcCCeeEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            456899999999999999999999999999999997554211      1114578999999999998887765       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEec-cccCcCC------cCCcc
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISA-ADFGVAN------YLLQG  178 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS-~~~~~~~------~~~~~  178 (202)
                      ++|++|||||....          +...+++|+.++.++++++.+    .+ .++||++|| ..+....      .+...
T Consensus        92 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~~~~~~~~~~~~~~  171 (265)
T 1h5q_A           92 PISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQVF  171 (265)
T ss_dssp             SEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCHH
T ss_pred             CCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCchhhccccccccccccccc
Confidence            48999999996432          234678999999999888753    23 379999999 3332111      12578


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.+.|.+++.+.
T Consensus       172 Y~~sK~a~~~~~~~la  187 (265)
T 1h5q_A          172 YNSSKAACSNLVKGLA  187 (265)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHH
Confidence            9999999999988764

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=99.84  E-value=4.7e-21  Score=150.67  Aligned_cols=140  Identities=16%  Similarity=0.216  Sum_probs=107.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......  .....++.++.+|++|+++++++++       ++|+
T Consensus         4 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~   83 (253)
T 1hxh_A            4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            367899999999999999999999999999999997543111  1113578899999999998887775       4799


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||....          +...+++|+.++..+.++    +++.+ ++||++||.....+..+...|+.+|.+.+.+.
T Consensus        84 lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  162 (253)
T 1hxh_A           84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-GSIINMASVSSWLPIEQYAGYSASKAAVSALT  162 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-EEEEEECCGGGTSCCTTBHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-CEEEEEcchhhcCCCCCCccHHHHHHHHHHHH
Confidence            9999996431          245678898888766654    44556 79999999322233445678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       163 ~~la  166 (253)
T 1hxh_A          163 RAAA  166 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=99.84  E-value=9.2e-21  Score=151.33  Aligned_cols=140  Identities=18%  Similarity=0.153  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.....  ......++.++.+|++|++++.++++       ++|+
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46789999999999999999999999999999999754311  11224578999999999998887765       5799


Q ss_pred             eEEccccCCC---------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          125 VISCVGGFGS---------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       125 vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|||||....               +...+++|+.++.++.+++..    .+ +++|++||.....+......|+.||.+
T Consensus        83 lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asKaa  161 (281)
T 3zv4_A           83 LIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSR-GSVVFTISNAGFYPNGGGPLYTATKHA  161 (281)
T ss_dssp             EECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSSSSSCHHHHHHHHH
T ss_pred             EEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC-CeEEEEecchhccCCCCCchhHHHHHH
Confidence            9999996421               234567999999988888743    33 699999994333344456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       162 ~~~l~~~la  170 (281)
T 3zv4_A          162 VVGLVRQMA  170 (281)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A*

Probab=99.84  E-value=1.4e-20  Score=154.59  Aligned_cols=133  Identities=17%  Similarity=0.198  Sum_probs=108.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-----CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcC---ccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-----LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDG---VTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-----~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~d~vi~  127 (202)
                      +|+|+||||+||||++++++|+++|     ++|++++|+.....  ....+++++.+|+.|++++.+++++   +|+|||
T Consensus         1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~--~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~d~vih   78 (364)
T 2v6g_A            1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW--HEDNPINYVQCDISDPDDSQAKLSPLTDVTHVFY   78 (364)
T ss_dssp             CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC--CCSSCCEEEECCTTSHHHHHHHHTTCTTCCEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc--cccCceEEEEeecCCHHHHHHHHhcCCCCCEEEE
Confidence            4789999999999999999999999     99999999865532  2235789999999999999999998   999999


Q ss_pred             ccccCC-CCccchhhhHHHHHHHHHHHHHc--CCCEEE-------EEec-cccCcCC-------------cCCcchHHHH
Q 028890          128 CVGGFG-SNSYMYKINGTANINAIRAASEK--GVKRFV-------YISA-ADFGVAN-------------YLLQGYYEGK  183 (202)
Q Consensus       128 ~a~~~~-~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v-------~~SS-~~~~~~~-------------~~~~~Y~~sK  183 (202)
                      +|+... ++...+++|+.++.+++++|++.  ++++||       |+|| .+||...             ...+.|    
T Consensus        79 ~a~~~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~v~~~g~~i~~Ss~~vyg~~~~~~~~~~E~~~~~~~~~~y----  154 (364)
T 2v6g_A           79 VTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFY----  154 (364)
T ss_dssp             CCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCTTCCEEEEECCTHHHHCCGGGTTTSCCCCSSBCTTSCCCSSCCHH----
T ss_pred             CCCCCcchHHHHHHHhHHHHHHHHHHHHHhccccceEEeccCceEEEechhhccccccCCCCCCccccCCccchhh----
Confidence            999754 34567899999999999999987  789998       7888 5676421             113457    


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      +.+|++++.+.
T Consensus       155 ~~~E~~~~~~~  165 (364)
T 2v6g_A          155 YDLEDIMLEEV  165 (364)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            34788777764

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=99.84  E-value=2.9e-21  Score=156.95  Aligned_cols=140  Identities=18%  Similarity=0.124  Sum_probs=107.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCC--CceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWA--NNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~--~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+..+...     ....  .++.++.+|++|++++.++++      
T Consensus         6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            467899999999999999999999999999999998643111     0011  278999999999999888776      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCcch
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQGY  179 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~----------~~~~~v~~SS~~~~~~~~~~~~Y  179 (202)
                       ++|++|||||...          .+...+++|+.|+.++++++...          +.++||++||...-.+......|
T Consensus        86 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~isS~a~~~~~~~~~~Y  165 (319)
T 3ioy_A           86 GPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVNTASMAAFLAAGSPGIY  165 (319)
T ss_dssp             CCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEEECCGGGTCCCSSSHHH
T ss_pred             CCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEEecccccccCCCCCHHH
Confidence             5799999999642          12457899999999988877432          34689999993322334456789


Q ss_pred             HHHHHHHHHHHHHh
Q 028890          180 YEGKVLSSDVAACQ  193 (202)
Q Consensus       180 ~~sK~~~E~~~~~~  193 (202)
                      +.||.+.+.+.+.+
T Consensus       166 ~aSKaal~~~~~~l  179 (319)
T 3ioy_A          166 NTTKFAVRGLSESL  179 (319)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999777666654

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=99.84  E-value=2.9e-21  Score=152.65  Aligned_cols=140  Identities=16%  Similarity=0.079  Sum_probs=109.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHH-CCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~-~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ++++++||||+|+||++++++|++ +|++|++++|+......     .....++.++.+|++|++++.++++       +
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   82 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   82 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            578999999999999999999999 99999999997542110     0113578899999999999888877       7


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEec-cccCc-----------------
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKG--VKRFVYISA-ADFGV-----------------  171 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS-~~~~~-----------------  171 (202)
                      +|+||||||....          +...+++|+.++.++++++.+..  .++||++|| ..+..                 
T Consensus        83 id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~~~~~~~~~~~~  162 (276)
T 1wma_A           83 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRALKSCSPELQQKFRSETI  162 (276)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHHHHTSCHHHHHHHHCSSC
T ss_pred             CCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcccccCChhHHhhcccccc
Confidence            9999999996431          23467899999999999997653  249999999 33311                 


Q ss_pred             -----------------------CCcCCcchHHHHHHHHHHHHHhc
Q 028890          172 -----------------------ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       172 -----------------------~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                                             ...+...|+.+|.+.|.+++.++
T Consensus       163 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la  208 (276)
T 1wma_A          163 TEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHA  208 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHH
Confidence                                   01134789999999999888754

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=99.84  E-value=6.6e-21  Score=150.22  Aligned_cols=141  Identities=11%  Similarity=0.075  Sum_probs=110.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.....  ......++.++.+|++|+++++++++       ++|+
T Consensus         7 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   86 (261)
T 3n74_A            7 LEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKVDI   86 (261)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCCE
Confidence            46789999999999999999999999999999999864321  11224578999999999999888776       6899


Q ss_pred             eEEccccCCC-----------CccchhhhHHHHHHHHHHHHH----cC----CCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          125 VISCVGGFGS-----------NSYMYKINGTANINAIRAASE----KG----VKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       125 vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~----~~----~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|||||....           +...+++|+.++.++.+++..    .+    ..+||++||.....+......|+.+|.+
T Consensus        87 li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asKaa  166 (261)
T 3n74_A           87 LVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILNVASTGAGRPRPNLAWYNATKGW  166 (261)
T ss_dssp             EEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTTTTSCCTTCHHHHHHHHH
T ss_pred             EEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCchhhcCCCCCccHHHHHHHH
Confidence            9999996431           234678999999988877643    21    3479999994333444556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       167 ~~~~~~~la  175 (261)
T 3n74_A          167 VVSVTKALA  175 (261)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=99.84  E-value=8.1e-21  Score=156.74  Aligned_cols=113  Identities=13%  Similarity=0.120  Sum_probs=99.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC--
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~--  133 (202)
                      |+|+||||+|+||++++++|+++|+ +|++++|+                    .|++++.++++++|+|||+||...  
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~--------------------~d~~~l~~~~~~~d~Vih~a~~~~~~   60 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ--------------------TKEEELESALLKADFIVHLAGVNRPE   60 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT--------------------CCHHHHHHHHHHCSEEEECCCSBCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC--------------------CCHHHHHHHhccCCEEEECCcCCCCC
Confidence            5899999999999999999999999 88888774                    578889999999999999999754  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ++...+++|+.++.+++++|++.+++ +|||+|| .+|+     .++|+.+|.++|++++.+.
T Consensus        61 ~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~-----~~~Y~~sK~~~E~~~~~~~  118 (369)
T 3st7_A           61 HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ-----DNPYGESKLQGEQLLREYA  118 (369)
T ss_dssp             CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS-----CSHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC-----CCCchHHHHHHHHHHHHHH
Confidence            34667889999999999999999987 9999999 4554     6789999999999999863

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=99.84  E-value=4.3e-20  Score=146.00  Aligned_cols=137  Identities=16%  Similarity=0.173  Sum_probs=107.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      ..++|+++||||+++||+++++.|+++|++|++++|+..+..     .+..++++|++|+++++++++       ++|++
T Consensus         8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDil   82 (261)
T 4h15_A            8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEGL-----PEELFVEADLTTKEGCAIVAEATRQRLGGVDVI   82 (261)
T ss_dssp             CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTTS-----CTTTEEECCTTSHHHHHHHHHHHHHHTSSCSEE
T ss_pred             CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhCC-----CcEEEEEcCCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            458899999999999999999999999999999999765422     344578999999998877665       58999


Q ss_pred             EEccccCC------------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchHHHHHHHHH
Q 028890          126 ISCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       126 i~~a~~~~------------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      |||||...            +|+..+++|+.+++.+.+++    ++++-+++|++||. .....+.....|+.||.+.+.
T Consensus        83 VnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Iv~isS~~~~~~~~~~~~~Y~asKaal~~  162 (261)
T 4h15_A           83 VHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSGVVVHVTSIQRVLPLPESTTAYAAAKAALST  162 (261)
T ss_dssp             EECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTTCHHHHHHHHHHHH
T ss_pred             EECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCceEEEEEehhhccCCCCccHHHHHHHHHHHH
Confidence            99998532            13457899999998776665    45566799999993 222223345789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       163 lt~~lA  168 (261)
T 4h15_A          163 YSKAMS  168 (261)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=99.84  E-value=2.1e-20  Score=146.85  Aligned_cols=135  Identities=16%  Similarity=0.141  Sum_probs=107.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..+..       ...+.+|++|+++++++++       ++|++|
T Consensus        20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~-------~~~~~~d~~d~~~v~~~~~~~~~~~g~iD~li   92 (251)
T 3orf_A           20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENPNA-------DHSFTIKDSGEEEIKSVIEKINSKSIKVDTFV   92 (251)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTTS-------SEEEECSCSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-------ccceEEEeCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            45789999999999999999999999999999999875431       2467889999998888775       469999


Q ss_pred             EccccCC-----------CCccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          127 SCVGGFG-----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       127 ~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ||||...           .+...+++|+.++.++++++....  .++||++||...-.+......|+.+|.+.+.+++.+
T Consensus        93 ~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sKaa~~~~~~~l  172 (251)
T 3orf_A           93 CAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALNRTSGMIAYGATKAATHHIIKDL  172 (251)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhccCCCCCchhHHHHHHHHHHHHHH
Confidence            9999632           123567899999999999987642  248999999432234455678999999999999987


Q ss_pred             cc
Q 028890          194 SV  195 (202)
Q Consensus       194 ~~  195 (202)
                      +.
T Consensus       173 a~  174 (251)
T 3orf_A          173 AS  174 (251)
T ss_dssp             TS
T ss_pred             HH
Confidence            53

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=99.84  E-value=7.4e-21  Score=152.03  Aligned_cols=142  Identities=15%  Similarity=0.099  Sum_probs=109.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|+++++++++       
T Consensus        41 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~~  120 (285)
T 2c07_A           41 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHK  120 (285)
T ss_dssp             CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhcC
Confidence            3457899999999999999999999999999998886533110     1113578899999999999888774       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|+||||||....          +...+++|+.++.++.+++.    +.+.++||++||...-.+......|+.+|.+.
T Consensus       121 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~asK~a~  200 (285)
T 2c07_A          121 NVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAGV  200 (285)
T ss_dssp             CCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCEEEEECChhhccCCCCCchHHHHHHHH
Confidence            68999999996431          23567899999887777664    45668999999942212334567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+++.+.
T Consensus       201 ~~~~~~la  208 (285)
T 2c07_A          201 IGFTKSLA  208 (285)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888764

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=99.84  E-value=6.5e-20  Score=147.62  Aligned_cols=142  Identities=13%  Similarity=0.058  Sum_probs=111.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----------c------cccCCCceeEEEccCCCHhhH
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------L------RDSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----------~------~~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+....           .      ......++.++.+|++|++++
T Consensus        25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v  104 (299)
T 3t7c_A           25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGRRIIASQVDVRDFDAM  104 (299)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            35678999999999999999999999999999999873210           0      011245789999999999998


Q ss_pred             HHHhc-------CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHH----c-CCCEEEEEeccccCcC
Q 028890          116 KEALD-------GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASE----K-GVKRFVYISAADFGVA  172 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~----~-~~~~~v~~SS~~~~~~  172 (202)
                      .++++       ++|++|||||....           +...+++|+.++.++.+++..    . +.++||++||...-.+
T Consensus       105 ~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~~~~~~  184 (299)
T 3t7c_A          105 QAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSIGGLRG  184 (299)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChhhccC
Confidence            88776       68999999996431           245789999999998888643    2 3569999999433334


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ......|+.+|.+.+.+.+.++
T Consensus       185 ~~~~~~Y~asKaa~~~l~~~la  206 (299)
T 3t7c_A          185 AENIGNYIASKHGLHGLMRTMA  206 (299)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHHH
Confidence            4556789999999999988764

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=99.84  E-value=8.6e-21  Score=152.02  Aligned_cols=140  Identities=15%  Similarity=0.091  Sum_probs=111.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCccc------cc-CCCceeEEEccCCCHhhHHHHhc----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~~------~~-~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      ++|+++||||+|+||++++++|+++|+   +|++++|+.+....      .. ...++.++.+|++|+++++++++    
T Consensus        32 ~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~  111 (287)
T 3rku_A           32 AKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQAEKIKPFIENLPQ  111 (287)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCTTCEEEEEECCTTCGGGHHHHHHTSCG
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence            578999999999999999999999988   99999998543111      00 13578899999999999998886    


Q ss_pred             ---CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHH
Q 028890          121 ---GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 ---~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                         ++|++|||||...           ++...+++|+.++.++++++    ++.+.++||++||...-.+......|+.+
T Consensus       112 ~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g~IV~isS~~~~~~~~~~~~Y~as  191 (287)
T 3rku_A          112 EFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCAS  191 (287)
T ss_dssp             GGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCTTCHHHHHH
T ss_pred             hcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECChhhcCCCCCCchHHHH
Confidence               4899999999642           12457899999999988887    45567899999994333344556789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+.++
T Consensus       192 Kaa~~~l~~~la  203 (287)
T 3rku_A          192 KFAVGAFTDSLR  203 (287)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A*

Probab=99.84  E-value=9.7e-21  Score=149.95  Aligned_cols=142  Identities=15%  Similarity=0.108  Sum_probs=108.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++++++||||+|+||++++++|+++|++|+++.++......      .....++.++.+|++|++++.++++      
T Consensus        23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~  102 (267)
T 4iiu_A           23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAGAQETLNAIVANGGNGRLLSFDVANREQCREVLEHEIAQH  102 (267)
T ss_dssp             --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHh
Confidence            3467899999999999999999999999999877654432111      1124678999999999999888776      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||....          +...+++|+.++.++++++.     +.+.++||++||...-.+..+...|+.+|.
T Consensus       103 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKa  182 (267)
T 4iiu_A          103 GAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGGRIITLSSVSGVMGNRGQVNYSAAKA  182 (267)
T ss_dssp             CCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCHHHHHCCTTCHHHHHHHH
T ss_pred             CCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEcchHhccCCCCCchhHHHHH
Confidence             68999999996431          24567899999999888763     455679999999322223445678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       183 a~~~~~~~la  192 (267)
T 4iiu_A          183 GIIGATKALA  192 (267)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877653

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.84  E-value=1.3e-20  Score=146.58  Aligned_cols=135  Identities=22%  Similarity=0.232  Sum_probs=107.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---------CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---------GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---------~~d~v  125 (202)
                      ++|+++||||+|+||++++++|+++|++|++++|+.....     ....++.+|++|++++.++++         ++|++
T Consensus         2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~~g~id~l   76 (236)
T 1ooe_A            2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGV   76 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCccccc-----cccEEEeCCCCCHHHHHHHHHHHHHHhCCCCCCEE
Confidence            3579999999999999999999999999999999865421     245778899999998887765         79999


Q ss_pred             EEccccCC-----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          126 ISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       126 i~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||||...           .+...+++|+.++.++.+++.+.  ..++||++||.....+..+...|+.+|.+.+.+.+.
T Consensus        77 v~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  156 (236)
T 1ooe_A           77 FCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSS  156 (236)
T ss_dssp             EECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHH
T ss_pred             EECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhccCCCCcHHHHHHHHHHHHHHHH
Confidence            99999532           12346789999999999988763  225999999932223345567899999999999988


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       157 la  158 (236)
T 1ooe_A          157 LA  158 (236)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=99.84  E-value=1e-20  Score=149.75  Aligned_cols=140  Identities=12%  Similarity=0.086  Sum_probs=106.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------cc-CCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DS-WANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~-~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      .. ...++.++.+|++|++++.++++      
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   84 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            456899999999999999999999999999999997543110      00 12468899999999999888776      


Q ss_pred             -CccEeEEccccCC--CCccchhhhHHHHHHHHH----HHHHcC---CCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          121 -GVTAVISCVGGFG--SNSYMYKINGTANINAIR----AASEKG---VKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       121 -~~d~vi~~a~~~~--~~~~~~~~n~~~~~~~~~----~~~~~~---~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                       ++|++|||||...  ++...+++|+.++..+.+    .+++.+   .++||++||.....+......|+.+|.+.+.++
T Consensus        85 g~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~  164 (267)
T 2gdz_A           85 GRLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFT  164 (267)
T ss_dssp             SCCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCCccccCCCCCCchHHHHHHHHHHHH
Confidence             4799999999643  456788899887765544    444432   579999999322223344578999999999998


Q ss_pred             HHh
Q 028890          191 ACQ  193 (202)
Q Consensus       191 ~~~  193 (202)
                      +.+
T Consensus       165 ~~~  167 (267)
T 2gdz_A          165 RSA  167 (267)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=99.84  E-value=4.3e-20  Score=147.60  Aligned_cols=142  Identities=13%  Similarity=0.054  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc---------------------cccCCCceeEEEccCCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---------------------RDSWANNVIWHQGNLLS  111 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~---------------------~~~~~~~~~~~~~D~~~  111 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.....                     ......++.++.+|++|
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   87 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD   87 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence            346789999999999999999999999999999998732110                     01123578999999999


Q ss_pred             HhhHHHHhc-------CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHHH----cC-CCEEEEEeccc
Q 028890          112 SDSWKEALD-------GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAASE----KG-VKRFVYISAAD  168 (202)
Q Consensus       112 ~~~~~~~~~-------~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~~----~~-~~~~v~~SS~~  168 (202)
                      +++++++++       ++|++|||||....           +...+++|+.++.++.+++..    .+ .++||++||..
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~  167 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSVG  167 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECchh
Confidence            999888776       68999999996431           234778999999998887643    23 46999999943


Q ss_pred             cCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          169 FGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       169 ~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .-.+......|+.+|.+.+.+.+.++
T Consensus       168 ~~~~~~~~~~Y~asKaa~~~~~~~la  193 (286)
T 3uve_A          168 GLKAYPHTGHYVAAKHGVVGLMRAFG  193 (286)
T ss_dssp             GTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCCCccHHHHHHHHHHHHHHHHH
Confidence            33344456789999999999988764

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=99.84  E-value=1.8e-20  Score=149.25  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=109.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC------------cc------cccCCCceeEEEccCCCHhh
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS------------SL------RDSWANNVIWHQGNLLSSDS  114 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~------------~~------~~~~~~~~~~~~~D~~~~~~  114 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+...            ..      ......++.++.+|++|+++
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   87 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANRRIVAAVVDTRDFDR   87 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHH
Confidence            3567899999999999999999999999999999985221            00      01124578999999999999


Q ss_pred             HHHHhc-------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcC
Q 028890          115 WKEALD-------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVA  172 (202)
Q Consensus       115 ~~~~~~-------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~  172 (202)
                      +.++++       ++|++|||||....          +...+++|+.++.++++++.    +.+ .++||++||...-.+
T Consensus        88 v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~~~~  167 (277)
T 3tsc_A           88 LRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAAGMKM  167 (277)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHhhCCC
Confidence            888775       58999999996432          24568999999998888753    333 469999999433334


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ......|+.||.+.+.+.+.++
T Consensus       168 ~~~~~~Y~asKaa~~~~~~~la  189 (277)
T 3tsc_A          168 QPFMIHYTASKHAVTGLARAFA  189 (277)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHHHHHH
Confidence            4456789999999999988764

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=99.84  E-value=1.7e-20  Score=151.01  Aligned_cols=140  Identities=12%  Similarity=0.117  Sum_probs=109.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---c--cCCC---ceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---D--SWAN---NVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~--~~~~---~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..+...   .  ....   ++.++.+|++|++++.++++     
T Consensus        24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  103 (297)
T 1xhl_A           24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK  103 (297)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999999999999999997543111   0  1122   68899999999999888776     


Q ss_pred             --CccEeEEccccCCC------------CccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCC-cCCcchHH
Q 028890          121 --GVTAVISCVGGFGS------------NSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVAN-YLLQGYYE  181 (202)
Q Consensus       121 --~~d~vi~~a~~~~~------------~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~-~~~~~Y~~  181 (202)
                        ++|++|||||....            +...+++|+.++.++++++..    .+ ++||++||.....+. .+...|+.
T Consensus       104 ~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g~IV~isS~~~~~~~~~~~~~Y~a  182 (297)
T 1xhl_A          104 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-GEIVNVSSIVAGPQAHSGYPYYAC  182 (297)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-CEEEEECCGGGSSSCCTTSHHHHH
T ss_pred             cCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-CEEEEEcCchhccCCCCCcchHHH
Confidence              68999999995321            234678999999988887643    45 799999993222233 45678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       183 sKaa~~~l~~~la  195 (297)
T 1xhl_A          183 AKAALDQYTRCTA  195 (297)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti}

Probab=99.84  E-value=9.6e-21  Score=150.23  Aligned_cols=141  Identities=15%  Similarity=0.188  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++++......      .....++.++.+|++|+++++++++       
T Consensus        25 ~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  104 (267)
T 3u5t_A           25 ETNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG  104 (267)
T ss_dssp             --CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999988665433111      1224578899999999999888776       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      ++|++|||||....          +...+++|+.++.++++++...  ..+++|++||.....+.+....|+.||.+.+.
T Consensus       105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asKaa~~~  184 (267)
T 3u5t_A          105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGLLHPSYGIYAAAKAGVEA  184 (267)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHHCCTTCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhccCCCCchHHHHHHHHHHH
Confidence            68999999996431          3456789999999999888653  22599999994333344556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       185 l~~~la  190 (267)
T 3u5t_A          185 MTHVLS  190 (267)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=99.84  E-value=5.1e-22  Score=151.12  Aligned_cols=135  Identities=15%  Similarity=0.079  Sum_probs=107.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC-CCceeEEEccCCCHhhHHHHhc---CccEeEEccccC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEALD---GVTAVISCVGGF  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~~~  132 (202)
                      |+++||||+|+||++++++|+++  +|++++|++.+...... ... +++.+|++|++++.++++   ++|+||||||..
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~~~~~id~vi~~ag~~   77 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGA-RALPADLADELEAKALLEEAGPLDLLVHAVGKA   77 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTC-EECCCCTTSHHHHHHHHHHHCSEEEEEECCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccC-cEEEeeCCCHHHHHHHHHhcCCCCEEEECCCcC
Confidence            58999999999999999999998  99999997543111000 012 888999999999999988   899999999964


Q ss_pred             CC----------CccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 GS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~~----------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..          +...+++|+.++.++++++++.+.++||++||.....+..+...|+.+|.+.|.+++.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~iv~~sS~~~~~~~~~~~~Y~~sK~a~~~~~~~~~  149 (207)
T 2yut_A           78 GRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGARAVFFGAYPRYVQVPGFAAYAAAKGALEAYLEAAR  149 (207)
T ss_dssp             CCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEECCCHHHHSSTTBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCcEEEEEcChhhccCCCCcchHHHHHHHHHHHHHHHH
Confidence            31          234678999999999999977677899999993222334556789999999999988763

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=99.84  E-value=1.3e-20  Score=148.26  Aligned_cols=138  Identities=14%  Similarity=0.219  Sum_probs=108.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      +|+++||||+|+||++++++|+++|  +.|++++|+.....  ......++.++.+|++|+++++++++       ++|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            5799999999999999999999985  68888888754311  11123578999999999999888776       6899


Q ss_pred             eEEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||||....           +...+++|+.++.++.+++    ++.+ +++|++||.....+..+...|+.+|.+.+.+
T Consensus        82 lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  160 (254)
T 3kzv_A           82 LVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-GNVVFVSSDACNMYFSSWGAYGSSKAALNHF  160 (254)
T ss_dssp             EEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCSCCCCSSCCSHHHHHHHHHHHHH
T ss_pred             EEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-CeEEEEcCchhccCCCCcchHHHHHHHHHHH
Confidence            9999996431           2357889999999988887    4555 7999999943333445567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       161 ~~~la  165 (254)
T 3kzv_A          161 AMTLA  165 (254)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=99.84  E-value=3.8e-20  Score=147.70  Aligned_cols=142  Identities=13%  Similarity=0.072  Sum_probs=110.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----------------cccCCCceeEEEccCCCHhhH
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------------RDSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----------------~~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+.....                 ......++.++.+|++|++++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHH
Confidence            457889999999999999999999999999999998732110                 011245789999999999998


Q ss_pred             HHHhc-------CccEeEEccccCCC--------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEec-cccCcC-----
Q 028890          116 KEALD-------GVTAVISCVGGFGS--------NSYMYKINGTANINAIRAASEK--GVKRFVYISA-ADFGVA-----  172 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~~~--------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS-~~~~~~-----  172 (202)
                      .++++       ++|++|||||....        +...+++|+.++.++++++...  +.+++|++|| ..+...     
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~  166 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIAAAQPPG  166 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHHHHCCC-
T ss_pred             HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccccccccc
Confidence            88776       78999999996432        3457899999999999998764  3359999999 322211     


Q ss_pred             -----CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 -----NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 -----~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           ..+...|+.+|.+.+.+.+.++
T Consensus       167 ~~~~~~~~~~~Y~asK~a~~~~~~~la  193 (287)
T 3pxx_A          167 AGGPQGPGGAGYSYAKQLVDSYTLQLA  193 (287)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCccchHHHHHHHHHHHHHHHH
Confidence                 0234579999999999988764

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=99.83  E-value=9.4e-20  Score=147.88  Aligned_cols=142  Identities=14%  Similarity=0.092  Sum_probs=110.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----------------cccCCCceeEEEccCCCHhhH
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----------------RDSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----------------~~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ..++|+++||||+|+||+++++.|+++|++|++++|+.....                 ......++.++.+|++|++++
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v  122 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGRRIIARQADVRDLASL  122 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHH
Confidence            356789999999999999999999999999999987632110                 011235788999999999998


Q ss_pred             HHHhc-------CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcC-CCEEEEEeccccCcCC
Q 028890          116 KEALD-------GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKG-VKRFVYISAADFGVAN  173 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~-~~~~v~~SS~~~~~~~  173 (202)
                      +++++       ++|++|||||...          .+...+++|+.++.++++++.    +.+ .++||++||...-.+.
T Consensus       123 ~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~~~~~~~  202 (317)
T 3oec_A          123 QAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSSTVGLRGA  202 (317)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCGGGSSCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcHHhcCCC
Confidence            88776       6899999999643          134577999999998888774    333 4689999994322334


Q ss_pred             cCCcchHHHHHHHHHHHHHhc
Q 028890          174 YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .....|+.||.+.+.+.+.++
T Consensus       203 ~~~~~Y~asKaa~~~l~~~la  223 (317)
T 3oec_A          203 PGQSHYAASKHGVQGLMLSLA  223 (317)
T ss_dssp             TTBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHHHHH
Confidence            456789999999999988764

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=99.83  E-value=2.6e-20  Score=148.87  Aligned_cols=141  Identities=9%  Similarity=-0.030  Sum_probs=109.4

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCC--cccc--cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRS--SLRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~--~~~~--~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+  |+||++++++|+++|++|++++|+...  ....  ...+++.++.+|++|++++.++++       
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999  999999999999999999999997631  0000  111347889999999999888776       


Q ss_pred             CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHHcC---CCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEKG---VKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 ~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~~---~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                      ++|++|||||....              +...+++|+.++.++++++....   .++||++||.....+......|+.+|
T Consensus        99 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  178 (285)
T 2p91_A           99 SLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLSYYGAEKVVPHYNVMGIAK  178 (285)
T ss_dssp             CCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEECGGGTSBCTTTTHHHHHH
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEccchhccCCCCccHHHHHH
Confidence            68999999996431              23467899999999999986642   36999999932222334457899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       179 ~a~~~~~~~la  189 (285)
T 2p91_A          179 AALESTVRYLA  189 (285)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=99.83  E-value=5.9e-20  Score=147.93  Aligned_cols=129  Identities=22%  Similarity=0.253  Sum_probs=103.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-------cccCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-------RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      +|+|+||||+|++|++++++|+++|++|++++|+.....       ......+++++.+|+.|++++.++++++|+|||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            578999999999999999999999999999999864310       0112467899999999999999999999999999


Q ss_pred             cccCCCCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCC-------cC-CcchHHHHHHHHHHHHHh
Q 028890          129 VGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVAN-------YL-LQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       129 a~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~~-------~~-~~~Y~~sK~~~E~~~~~~  193 (202)
                      ++....     ..|+.++.+++++|++.+ +++||+ |+  |+...       .+ ...| .+|..+|++++.+
T Consensus        84 a~~~~~-----~~~~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  148 (313)
T 1qyd_A           84 LAGGVL-----SHHILEQLKLVEAIKEAGNIKRFLP-SE--FGMDPDIMEHALQPGSITF-IDKRKVRRAIEAA  148 (313)
T ss_dssp             CCCSSS-----STTTTTHHHHHHHHHHSCCCSEEEC-SC--CSSCTTSCCCCCSSTTHHH-HHHHHHHHHHHHT
T ss_pred             Cccccc-----hhhHHHHHHHHHHHHhcCCCceEEe-cC--CcCCccccccCCCCCcchH-HHHHHHHHHHHhc
Confidence            997542     236778899999999998 999986 44  33211       12 3457 9999999999864

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=99.83  E-value=4.9e-20  Score=145.37  Aligned_cols=141  Identities=11%  Similarity=0.057  Sum_probs=111.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.+....    .....++.++.+|++|+++++++++       +
T Consensus         4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~   83 (258)
T 4gkb_A            4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGR   83 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            4578999999999999999999999999999999998765211    1224678999999999998877665       5


Q ss_pred             ccEeEEccccCC---------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          122 VTAVISCVGGFG---------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       122 ~d~vi~~a~~~~---------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|++|||||...         .|...+++|+.+++.+.+++.    +.+ +++|++||...-.+.+....|+.+|.+.+.
T Consensus        84 iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~IVnisS~~~~~~~~~~~~Y~asKaav~~  162 (258)
T 4gkb_A           84 LDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATR-GAIVNISSKTAVTGQGNTSGYCASKGAQLA  162 (258)
T ss_dssp             CCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTHHHHCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC-CeEEEEeehhhccCCCCchHHHHHHHHHHH
Confidence            899999999643         245577899999988777653    334 799999994222334456789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       163 ltr~lA  168 (258)
T 4gkb_A          163 LTREWA  168 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ...

Probab=99.83  E-value=1.8e-20  Score=152.72  Aligned_cols=139  Identities=12%  Similarity=0.057  Sum_probs=108.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--c---------cCCCceeEEEccCCCHhhHHHHhcC---
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--D---------SWANNVIWHQGNLLSSDSWKEALDG---  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~---------~~~~~~~~~~~D~~~~~~~~~~~~~---  121 (202)
                      +++++||||+|+||++++++|+++|++|+++.|+......  .         ....++.++.+|++|++++.++++.   
T Consensus         2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   81 (327)
T 1jtv_A            2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (327)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHHHHHHHHHhhhccCCCCceEEEEecCCCHHHHHHHHHHHhc
Confidence            5789999999999999999999999999888876433111  0         0125789999999999999998875   


Q ss_pred             --ccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          122 --VTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       122 --~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                        +|++|||||...          .+...+++|+.++.++++++    ++.+.++||++||...-.+......|+.||++
T Consensus        82 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g~IV~isS~~~~~~~~~~~~Y~aSK~a  161 (327)
T 1jtv_A           82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFA  161 (327)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCEEEEECCcccccCCCCChHHHHHHHH
Confidence              899999998532          12457889999999988885    45567899999993222233445789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.+.
T Consensus       162 ~~~~~~~la  170 (327)
T 1jtv_A          162 LEGLCESLA  170 (327)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=99.83  E-value=1.9e-20  Score=148.96  Aligned_cols=138  Identities=13%  Similarity=0.063  Sum_probs=107.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc-CCCceeEEEccCCCHhhHHHHhcC-------ccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALDG-------VTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~~-------~d~v  125 (202)
                      |+++||||+|+||++++++|+++|++|++++|+......   .. ...++.++.+|++|++++.++++.       +|++
T Consensus        22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l  101 (272)
T 2nwq_A           22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELSAKTRVLPLTLDVRDRAAMSAAVDNLPEEFATLRGL  101 (272)
T ss_dssp             CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHTCCGGGSSCCEE
T ss_pred             cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCCCEE
Confidence            799999999999999999999999999999997543111   00 114788999999999999988864       5999


Q ss_pred             EEccccCCC-----------CccchhhhHHHHHHHHHHH----HHcCCC-EEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          126 ISCVGGFGS-----------NSYMYKINGTANINAIRAA----SEKGVK-RFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       126 i~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~----~~~~~~-~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      |||||....           +...+++|+.++.++.+++    ++.+.+ +||++||.....+......|+.+|.+.+.+
T Consensus       102 vnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~~~~~~~~Y~asKaa~~~l  181 (272)
T 2nwq_A          102 INNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKWPYPGSHVYGGTKAFVEQF  181 (272)
T ss_dssp             EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhccCCCCCchHHHHHHHHHHH
Confidence            999996431           2346789999988776665    455667 999999942223334557899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       182 ~~~la  186 (272)
T 2nwq_A          182 SLNLR  186 (272)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98764

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=99.83  E-value=2.5e-20  Score=145.66  Aligned_cols=142  Identities=16%  Similarity=0.085  Sum_probs=112.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc---cccCCCceeEEEccCCCHhhHHHHhc--CccEeEE
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL---RDSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~  127 (202)
                      ..++|+++||||+++||+++++.|+++|++|++.+|+..+..   ......++..+.+|++|+++++++++  ++|++||
T Consensus         6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLVN   85 (247)
T 4hp8_A            6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILVN   85 (247)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEEE
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEEE
Confidence            458999999999999999999999999999999999764321   12234678999999999998887776  5899999


Q ss_pred             ccccCC----------CCccchhhhHHHHHHHHHHH----HHcC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          128 CVGGFG----------SNSYMYKINGTANINAIRAA----SEKG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       128 ~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||...          +|+..+++|+.+++.+.+++    .+++ -++||++||...-.+......|+.||.....+.+.
T Consensus        86 NAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~g~~~~~~Y~asKaav~~ltr~  165 (247)
T 4hp8_A           86 NAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQGGIRVPSYTAAKHGVAGLTKL  165 (247)
T ss_dssp             CCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCCCCCCChHHHHHHHHHHHHHHH
Confidence            999643          35668899999999887764    3343 46999999943333344557899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       166 lA  167 (247)
T 4hp8_A          166 LA  167 (247)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=99.83  E-value=1.9e-20  Score=149.60  Aligned_cols=141  Identities=14%  Similarity=0.031  Sum_probs=107.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......      ......+.++.+|++|+++++++++       
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           31 GEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             ---CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999998643111      0112235899999999999888775       


Q ss_pred             CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHH----HcC--CCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EKG--VKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 ~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                      ++|++|||||....           +...+++|+.++.++.+++.    +.+  .++||++||.....+..+...|+.+|
T Consensus       111 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asK  190 (281)
T 4dry_A          111 RLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGSISAQTPRPNSAPYTATK  190 (281)
T ss_dssp             CCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCGGGTCCCTTCHHHHHHH
T ss_pred             CCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECCHHhCCCCCCChhHHHHH
Confidence            57999999996421           23477899999988777664    333  46999999943333445567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+.+.++
T Consensus       191 aa~~~l~~~la  201 (281)
T 4dry_A          191 HAITGLTKSTA  201 (281)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=99.83  E-value=9.2e-21  Score=154.10  Aligned_cols=143  Identities=11%  Similarity=0.055  Sum_probs=109.7

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC----------CCcc-----cccCCCceeEEEccCCCHhhHH
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG----------RSSL-----RDSWANNVIWHQGNLLSSDSWK  116 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~----------~~~~-----~~~~~~~~~~~~~D~~~~~~~~  116 (202)
                      ...++++++||||+|+||++++++|+++|++|++++|+.          ....     ......++.++.+|++|++++.
T Consensus        23 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~  102 (322)
T 3qlj_A           23 GVVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEITAAGGEAVADGSNVADWDQAA  102 (322)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHHHHTTCEEEEECCCTTSHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHH
Confidence            345778999999999999999999999999999999862          1100     0112357889999999999988


Q ss_pred             HHhc-------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcC----------CCEEEEEecccc
Q 028890          117 EALD-------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKG----------VKRFVYISAADF  169 (202)
Q Consensus       117 ~~~~-------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~----------~~~~v~~SS~~~  169 (202)
                      ++++       ++|++|||||....          +...+++|+.++.++++++....          -++||++||...
T Consensus       103 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~isS~~~  182 (322)
T 3qlj_A          103 GLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIINTSSGAG  182 (322)
T ss_dssp             HHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECCHHH
T ss_pred             HHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEEEcCHHH
Confidence            8776       78999999996431          34578999999999888774321          149999999322


Q ss_pred             CcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          170 GVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       170 ~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      -.+......|+.||.+.+.+.+.++
T Consensus       183 ~~~~~~~~~Y~asKaal~~l~~~la  207 (322)
T 3qlj_A          183 LQGSVGQGNYSAAKAGIATLTLVGA  207 (322)
T ss_dssp             HHCBTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHH
Confidence            2234456789999999999988764

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=99.83  E-value=3.1e-20  Score=146.82  Aligned_cols=141  Identities=14%  Similarity=0.141  Sum_probs=112.1

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      .++++++||||+  |+||++++++|+++|++|++++|+......       .....++.++.+|++|+++++++++    
T Consensus        18 l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   97 (267)
T 3gdg_A           18 LKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVVA   97 (267)
T ss_dssp             CTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHHH
Confidence            467899999999  999999999999999999999987654211       1124678999999999999888776    


Q ss_pred             ---CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-ccc-CcCCcCCcchHH
Q 028890          121 ---GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADF-GVANYLLQGYYE  181 (202)
Q Consensus       121 ---~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~-~~~~~~~~~Y~~  181 (202)
                         ++|++|||||....          +...+++|+.++.++.+++    ++.+.+++|++|| ..+ +....+...|+.
T Consensus        98 ~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~~~Y~~  177 (267)
T 3gdg_A           98 DFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTGSLVITASMSGHIANFPQEQTSYNV  177 (267)
T ss_dssp             HTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCCSSSCCHHHHH
T ss_pred             HcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCceEEEEccccccccCCCCCCCcchH
Confidence               57999999996432          2457889999999888877    4556679999999 332 322345678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+++.++
T Consensus       178 sK~a~~~~~~~la  190 (267)
T 3gdg_A          178 AKAGCIHMARSLA  190 (267)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=99.83  E-value=1.3e-20  Score=149.12  Aligned_cols=139  Identities=17%  Similarity=0.156  Sum_probs=109.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+.+....  .....++.++.+|++|+++++++++       ++|+
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            357899999999999999999999999999999998543111  1112578899999999998888776       4799


Q ss_pred             eEEccccCCC----------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHH
Q 028890          125 VISCVGGFGS----------NSYMYKINGTANINAIRAASEKG--VKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       125 vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      +|||||....          +...+++|+.++.++.+++....  .++||++|| ..+  +......|+.+|.+.+.+.+
T Consensus        84 lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~--~~~~~~~Y~asK~a~~~~~~  161 (263)
T 2a4k_A           84 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGL--GAFGLAHYAAGKLGVVGLAR  161 (263)
T ss_dssp             EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTC--CHHHHHHHHHCSSHHHHHHH
T ss_pred             EEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhc--CCCCcHHHHHHHHHHHHHHH
Confidence            9999996431          24567899999999999987642  359999999 444  33445689999999998887


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       162 ~la  164 (263)
T 2a4k_A          162 TLA  164 (263)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=99.83  E-value=1e-20  Score=149.65  Aligned_cols=142  Identities=15%  Similarity=0.138  Sum_probs=106.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc--c------cccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--L------RDSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~------~~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      ..++++++||||+|+||++++++|+++|++|++++|.....  .      ......++.++.+|++|+++++++++    
T Consensus         8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~   87 (262)
T 3ksu_A            8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEK   87 (262)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999998764321  0      01124578999999999999888776    


Q ss_pred             ---CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 ---GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 ---~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                         ++|++|||||....          +...+++|+.++.++.+++...  +.+++|++||.....+......|+.+|.+
T Consensus        88 ~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~~~Y~asKaa  167 (262)
T 3ksu_A           88 EFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIATSLLAAYTGFYSTYAGNKAP  167 (262)
T ss_dssp             HHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECCCHHHHHHCCCCC-----CH
T ss_pred             HcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEechhhccCCCCCchhHHHHHH
Confidence               68999999996431          2456789999999999998764  34699999994222233445789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       168 ~~~l~~~la  176 (262)
T 3ksu_A          168 VEHYTRAAS  176 (262)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=99.83  E-value=3.4e-20  Score=149.12  Aligned_cols=140  Identities=16%  Similarity=0.090  Sum_probs=109.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------c----cCCCceeEEEccCCCHhhHHHHhc---
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D----SWANNVIWHQGNLLSSDSWKEALD---  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~----~~~~~~~~~~~D~~~~~~~~~~~~---  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      .    ....++.++.+|++|++++.++++   
T Consensus        16 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~   95 (303)
T 1yxm_A           16 LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL   95 (303)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhccccCCccEEEEecCCCCHHHHHHHHHHHH
Confidence            467899999999999999999999999999999997543110      0    123578999999999999888776   


Q ss_pred             ----CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHH
Q 028890          121 ----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 ----~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                          ++|+||||||...          .+...+++|+.++.++++++..    .+.++||++||.. ..+......|+.+
T Consensus        96 ~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~iv~isS~~-~~~~~~~~~Y~~s  174 (303)
T 1yxm_A           96 DTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPT-KAGFPLAVHSGAA  174 (303)
T ss_dssp             HHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCC-TTCCTTCHHHHHH
T ss_pred             HHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCeEEEEEeec-ccCCCcchhhHHH
Confidence                4899999999532          1234678999999999998754    2346999999944 2233445789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+.++
T Consensus       175 K~a~~~~~~~la  186 (303)
T 1yxm_A          175 RAGVYNLTKSLA  186 (303)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999888754

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=99.83  E-value=1.5e-20  Score=148.40  Aligned_cols=141  Identities=11%  Similarity=0.035  Sum_probs=109.0

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc--ccc--cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~--~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+  |+||++++++|+++|++|++++|+....  ...  ...+++.++.+|++|+++++++++       
T Consensus         6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (261)
T 2wyu_A            6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (261)
T ss_dssp             CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            356899999999  9999999999999999999999976310  000  011347899999999999888776       


Q ss_pred             CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||....              +...+++|+.++.++++++.+.-  .++||++||.....+..+...|+.+|.
T Consensus        86 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  165 (261)
T 2wyu_A           86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKA  165 (261)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTCHHHHHHHH
T ss_pred             CCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEecccccCCCCCchHHHHHHH
Confidence            68999999996431              23567899999999999987641  259999999322223344578999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       166 a~~~~~~~la  175 (261)
T 2wyu_A          166 ALEASVRYLA  175 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=99.83  E-value=3.5e-20  Score=145.43  Aligned_cols=138  Identities=19%  Similarity=0.117  Sum_probs=101.7

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCC-CHhhHHHHhcCccEeEEccc
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ...++|+++||||+|+||++++++|+++|++|++++|+... ....  .++.++ +|+. +.+.+.+.+.++|++|||||
T Consensus        15 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~-~~~~--~~~~~~-~D~~~~~~~~~~~~~~iD~lv~~Ag   90 (249)
T 1o5i_A           15 LGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL-LKRS--GHRYVV-CDLRKDLDLLFEKVKEVDILVLNAG   90 (249)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH-HHHT--CSEEEE-CCTTTCHHHHHHHSCCCSEEEECCC
T ss_pred             hccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHH-HHhh--CCeEEE-eeHHHHHHHHHHHhcCCCEEEECCC
Confidence            34578999999999999999999999999999999997522 1111  356677 9992 23333334448999999999


Q ss_pred             cCCC----------CccchhhhHHHHHHHHH----HHHHcCCCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFGS----------NSYMYKINGTANINAIR----AASEKGVKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~~----------~~~~~~~n~~~~~~~~~----~~~~~~~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....          +...+++|+.++.++.+    .+++.+.++||++|| ..+. +..+...|+.+|.+.+.+.+.+.
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~-~~~~~~~Y~~sK~a~~~~~~~la  168 (249)
T 1o5i_A           91 GPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVIS-PIENLYTSNSARMALTGFLKTLS  168 (249)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTS-CCTTBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEEcchHhcC-CCCCCchHHHHHHHHHHHHHHHH
Confidence            6431          23567889999876644    455667789999999 3333 33456789999999999888753

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=99.83  E-value=3.2e-20  Score=147.58  Aligned_cols=141  Identities=11%  Similarity=-0.015  Sum_probs=109.6

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc--ccc--cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS--LRD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~--~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+  |+||++++++|+++|++|++++|+....  ...  ...+++.++.+|++|++++.++++       
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            357899999999  9999999999999999999999986411  010  111347899999999999888776       


Q ss_pred             CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||....              +...+++|+.++.++++++...-  .++||++||.....+......|+.+|.
T Consensus        84 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~  163 (275)
T 2pd4_A           84 SLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKA  163 (275)
T ss_dssp             CEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHHHHHH
T ss_pred             CCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEecchhcCCCCCchhhHHHHH
Confidence            68999999996431              23467899999999999987651  259999999322233345578999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       164 a~~~~~~~la  173 (275)
T 2pd4_A          164 ALESAVRYLA  173 (275)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=99.83  E-value=8.4e-20  Score=146.79  Aligned_cols=141  Identities=11%  Similarity=-0.068  Sum_probs=110.7

Q ss_pred             CCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|  +||++++++|+++|++|++++|+......    .....++.++.+|++|+++++++++       
T Consensus        28 l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (296)
T 3k31_A           28 MEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWG  107 (296)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             cCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            4678999999997  99999999999999999999998532110    0112356899999999999888776       


Q ss_pred             CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||...              .+...+++|+.++.++.+++...-  .++||++||.....+......|+.||.
T Consensus       108 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS~~~~~~~~~~~~Y~asKa  187 (296)
T 3k31_A          108 SLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSYYGAEKVVPHYNVMGVCKA  187 (296)
T ss_dssp             CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTTHHHHHHH
T ss_pred             CCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEehhhccCCCCchhhHHHHH
Confidence            5899999999653              124577899999999999987643  349999999433333445678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       188 al~~l~~~la  197 (296)
T 3k31_A          188 ALEASVKYLA  197 (296)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=99.82  E-value=1.5e-19  Score=142.84  Aligned_cols=141  Identities=10%  Similarity=0.005  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCCh--hHHHHHHHHHHCCCeEEEEecCCCCcc-----c-ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGF--VGSHICREALDRGLTVASLSRSGRSSL-----R-DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~--iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~-~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++++++||||+|+  ||++++++|+++|++|++++|+.....     . .....++.++.+|++|+++++++++     
T Consensus         5 l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            5 LEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             CTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            46789999999976  999999999999999999998753211     0 1112378999999999998888776     


Q ss_pred             --CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHH
Q 028890          121 --GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 --~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                        ++|++|||||...              .+...+++|+.++.++++++...-  .++||++||.....+.+....|+.+
T Consensus        85 ~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~as  164 (266)
T 3oig_A           85 VGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTYLGGELVMPNYNVMGVA  164 (266)
T ss_dssp             HSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEECGGGTSCCTTTHHHHHH
T ss_pred             hCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEecccccccCCCcchhHHH
Confidence              6899999999643              113467899999999999987653  2499999994333334456789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+.++
T Consensus       165 Kaa~~~~~~~la  176 (266)
T 3oig_A          165 KASLDASVKYLA  176 (266)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=99.82  E-value=4.1e-20  Score=147.73  Aligned_cols=141  Identities=15%  Similarity=0.106  Sum_probs=107.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+......      .....++.++.+|++|++++.++++       
T Consensus        26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~g  105 (286)
T 1xu9_A           26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG  105 (286)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            357899999999999999999999999999999997543111      0112368899999999998887775       


Q ss_pred             CccEeEEc-cccCCC---------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          121 GVTAVISC-VGGFGS---------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 ~~d~vi~~-a~~~~~---------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|++||| +|....         +...+++|+.++.++++++...   +.++||++||.....+..+...|+.+|.+.+
T Consensus       106 ~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~  185 (286)
T 1xu9_A          106 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNGSIVVVSSLAGKVAYPMVAAYSASKFALD  185 (286)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEGGGTSCCTTCHHHHHHHHHHH
T ss_pred             CCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCCEEEEECCcccccCCCCccHHHHHHHHHH
Confidence            68999999 564321         1346789999999888877432   2369999999422233445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.+.
T Consensus       186 ~~~~~l~  192 (286)
T 1xu9_A          186 GFFSSIR  192 (286)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9888753

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=99.82  E-value=5.8e-20  Score=147.57  Aligned_cols=142  Identities=9%  Similarity=-0.025  Sum_probs=110.7

Q ss_pred             CCCCCeEEEEccCCh--hHHHHHHHHHHCCCeEEEEecCCCCcc--c--ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGF--VGSHICREALDRGLTVASLSRSGRSSL--R--DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~--iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~--~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++|+++||||+|+  ||++++++|+++|++|++++|+.....  .  .....++.++.+|++|+++++++++      
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            356789999999976  999999999999999999998742110  0  0112468899999999999888776      


Q ss_pred             -CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 -GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 -~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                       ++|++|||||...              .+...+++|+.++.++++++...-  .++||++||.....+......|+.||
T Consensus       108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~asK  187 (293)
T 3grk_A          108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTYYGAEKVMPNYNVMGVAK  187 (293)
T ss_dssp             SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEECGGGTSBCTTTTHHHHHH
T ss_pred             CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEeehhhccCCCchHHHHHHH
Confidence             6899999999653              123577899999999999987642  35999999943333344567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+.+.++
T Consensus       188 aa~~~l~~~la  198 (293)
T 3grk_A          188 AALEASVKYLA  198 (293)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=99.82  E-value=2.7e-20  Score=147.75  Aligned_cols=141  Identities=10%  Similarity=0.029  Sum_probs=112.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...  ......++..+++|++|+++++++++       ++|+
T Consensus        27 L~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDi  106 (273)
T 4fgs_A           27 LNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRIDV  106 (273)
T ss_dssp             TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEEE
T ss_pred             hCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            57899999999999999999999999999999999864321  12224678899999999998887765       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      +|+|||...          +|+..+++|+.+++.+.+++...  +-+++|++||...-.+.+....|+.+|.+...+.+.
T Consensus       107 LVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~~~~~~~~Y~asKaav~~ltr~  186 (273)
T 4fgs_A          107 LFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGSTGTPAFSVYAASKAALRSFARN  186 (273)
T ss_dssp             EEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhccCCCCchHHHHHHHHHHHHHHH
Confidence            999999532          24668899999999998888543  124899999943333444567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       187 lA  188 (273)
T 4fgs_A          187 WI  188 (273)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus}

Probab=99.82  E-value=3.1e-20  Score=143.35  Aligned_cols=126  Identities=11%  Similarity=0.050  Sum_probs=103.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---CccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~  130 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+..               +|++|+++++++++   ++|++|||||
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~---------------~D~~~~~~v~~~~~~~g~id~lv~nAg   68 (223)
T 3uce_A            4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQTG---------------LDISDEKSVYHYFETIGAFDHLIVTAG   68 (223)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGGT---------------CCTTCHHHHHHHHHHHCSEEEEEECCC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCcc---------------cCCCCHHHHHHHHHHhCCCCEEEECCC
Confidence            35789999999999999999999999999999998753               79999999988876   6899999999


Q ss_pred             cCCC-----------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFGS-----------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~~-----------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ....           +...+++|+.++.++.+++.+.-  .+++|++||.....+..+...|+.+|.+.+.+.+.++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~~~~~~~~Y~asK~a~~~~~~~la  145 (223)
T 3uce_A           69 SYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRKVVANTYVKAAINAAIEATTKVLA  145 (223)
T ss_dssp             CCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhccCCCCchHHHHHHHHHHHHHHHHH
Confidence            6521           23467899999999999987642  2489999994333344556789999999999988764

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=99.82  E-value=3.2e-20  Score=148.86  Aligned_cols=141  Identities=16%  Similarity=0.113  Sum_probs=108.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEe-cCCCCccc---c---cCCCceeEEEccCCCHh-------------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLR---D---SWANNVIWHQGNLLSSD-------------  113 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~-r~~~~~~~---~---~~~~~~~~~~~D~~~~~-------------  113 (202)
                      .++|+++||||+|+||++++++|+++|++|++++ |+......   .   ....++.++.+|++|++             
T Consensus         7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (291)
T 1e7w_A            7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV   86 (291)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCB
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHhhhcCCeeEEEEeecCCccccccccccccccc
Confidence            4678999999999999999999999999999999 87532110   0   12357899999999998             


Q ss_pred             ----hHHHHhc-------CccEeEEccccCCC------------------------CccchhhhHHHHHHHHHHHH----
Q 028890          114 ----SWKEALD-------GVTAVISCVGGFGS------------------------NSYMYKINGTANINAIRAAS----  154 (202)
Q Consensus       114 ----~~~~~~~-------~~d~vi~~a~~~~~------------------------~~~~~~~n~~~~~~~~~~~~----  154 (202)
                          ++.++++       ++|++|||||....                        +...+++|+.++.++++++.    
T Consensus        87 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~  166 (291)
T 1e7w_A           87 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  166 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence                8887776       68999999996421                        12467889999998888774    


Q ss_pred             HcC------CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          155 EKG------VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       155 ~~~------~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.+      .++||++||.....+......|+.+|.+.+.+.+.++
T Consensus       167 ~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaa~~~l~~~la  212 (291)
T 1e7w_A          167 GTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAA  212 (291)
T ss_dssp             TSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCCCCCCcEEEEEechhhcCCCCCCchhHHHHHHHHHHHHHHH
Confidence            334      4799999994333334456789999999999988764

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=99.82  E-value=5.6e-20  Score=145.37  Aligned_cols=143  Identities=10%  Similarity=-0.044  Sum_probs=111.6

Q ss_pred             CCCCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           52 PPPPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        52 ~~~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      ...++|+++||||+  |+||++++++|+++|++|++++|+......    ....+++.++.+|++|+++++++++     
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            34578999999999  999999999999999999999987432110    1112458899999999999888776     


Q ss_pred             --CccEeEEccccCCC---------------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHH
Q 028890          121 --GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 --~~d~vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                        ++|++|||||....               +...+++|+.++.++.+++...-  .++||++||.....+......|+.
T Consensus        90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  169 (271)
T 3ek2_A           90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLSYLGAERAIPNYNTMGL  169 (271)
T ss_dssp             CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHH
T ss_pred             cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEeccccccCCCCccchhH
Confidence              57999999996431               13467899999999999986642  348999999433334455678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.+.
T Consensus       170 sKaa~~~~~~~la  182 (271)
T 3ek2_A          170 AKAALEASVRYLA  182 (271)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str}

Probab=99.82  E-value=5e-20  Score=144.56  Aligned_cols=142  Identities=18%  Similarity=0.102  Sum_probs=109.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhcC-----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALDG-----  121 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~-----  121 (202)
                      +.++|+++||||+|+||++++++|+++|++|+++.++......      .....++.++.+|+.|.++++++++.     
T Consensus         4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (255)
T 3icc_A            4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNEL   83 (255)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhcCCceEEEecCcCCHHHHHHHHHHHHHHh
Confidence            3567899999999999999999999999999987554432111      11245788999999999888776642     


Q ss_pred             --------ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHH
Q 028890          122 --------VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       122 --------~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                              +|++|||||....          +...+++|+.++.++++++...  +.++||++||.....+.+....|+.
T Consensus        84 ~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~isS~~~~~~~~~~~~Y~a  163 (255)
T 3icc_A           84 QNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSM  163 (255)
T ss_dssp             HHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGTSCCTTBHHHHH
T ss_pred             cccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCCCEEEEeCChhhccCCCCcchhHH
Confidence                    8999999996431          2346789999999999998654  3358999999433334445678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       164 sKaa~~~~~~~la  176 (255)
T 3icc_A          164 TKGAINTMTFTLA  176 (255)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            9999999988764

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=99.82  E-value=5.1e-20  Score=145.65  Aligned_cols=141  Identities=11%  Similarity=-0.016  Sum_probs=108.4

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCcc--cc--cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSSL--RD--SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~--~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++++++||||+  |+||++++++|+++|++|++++|+.....  ..  ...+...++.+|++|+++++++++       
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            356899999999  99999999999999999999999862110  00  011335789999999999888776       


Q ss_pred             CccEeEEccccCCC---------------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 ~~d~vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                      ++|++|||||....               +...+++|+.++.++++++.+.-  .++||++||...-.+......|+.+|
T Consensus        87 ~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK  166 (265)
T 1qsg_A           87 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAK  166 (265)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHHHH
T ss_pred             CCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEcchhhccCCCCchHHHHHH
Confidence            68999999996431               23467899999999999987642  25999999932222334457899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+.+.++
T Consensus       167 ~a~~~~~~~la  177 (265)
T 1qsg_A          167 ASLEANVRYMA  177 (265)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=99.82  E-value=1.3e-19  Score=144.93  Aligned_cols=141  Identities=13%  Similarity=0.148  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC-CCcc---cc---cCCCceeEEEccCCC----HhhHHHHhc--
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSSL---RD---SWANNVIWHQGNLLS----SDSWKEALD--  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~-~~~~---~~---~~~~~~~~~~~D~~~----~~~~~~~~~--  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+. ....   ..   ....++.++.+|++|    ++++.++++  
T Consensus        21 l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~~~~~v~~~~~~~  100 (288)
T 2x9g_A           21 MEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADELNKERSNTAVVCQADLTNSNVLPASCEEIINSC  100 (288)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSCSTTHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHHHhhcCCceEEEEeecCCccCCHHHHHHHHHHH
Confidence            4678999999999999999999999999999999986 3210   00   123578899999999    888887765  


Q ss_pred             -----CccEeEEccccCCC--------------------CccchhhhHHHHHHHHHHHHHc----C------CCEEEEEe
Q 028890          121 -----GVTAVISCVGGFGS--------------------NSYMYKINGTANINAIRAASEK----G------VKRFVYIS  165 (202)
Q Consensus       121 -----~~d~vi~~a~~~~~--------------------~~~~~~~n~~~~~~~~~~~~~~----~------~~~~v~~S  165 (202)
                           ++|++|||||....                    +...+++|+.++..+.+++...    +      .++||++|
T Consensus       101 ~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iv~is  180 (288)
T 2x9g_A          101 FRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQKGTNPNCTSSNLSIVNLC  180 (288)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC--------CCCEEEEEEC
T ss_pred             HHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCCCCCCCeEEEEEe
Confidence                 68999999996421                    1235688999999988887542    2      45999999


Q ss_pred             ccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          166 AADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       166 S~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      |.....+......|+.+|.+.+.+.+.++
T Consensus       181 S~~~~~~~~~~~~Y~asKaa~~~l~~~la  209 (288)
T 2x9g_A          181 DAMVDQPCMAFSLYNMGKHALVGLTQSAA  209 (288)
T ss_dssp             CTTTTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCCchHHHHHHHHHHHHHHHH
Confidence            94322334456789999999998888754

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=99.81  E-value=2.1e-19  Score=143.24  Aligned_cols=143  Identities=11%  Similarity=-0.010  Sum_probs=110.1

Q ss_pred             CCCCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCcc-c--ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           52 PPPPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSL-R--DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~--~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ...++|+++||||+|  +||++++++|+++|++|++++|+..... .  .....++.++.+|++|++++.++++      
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  101 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVW  101 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHc
Confidence            345678999999995  5999999999999999999999862111 0  1122468899999999999888775      


Q ss_pred             -CccEeEEccccCCC---------------CccchhhhHHHHHHHHHHHHHc---CCCEEEEEeccccCcCCcCCcchHH
Q 028890          121 -GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEK---GVKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 -~~d~vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~---~~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                       ++|++|||||....               +...+++|+.++.++++++...   +.++||++||.....+......|+.
T Consensus       102 g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~a  181 (280)
T 3nrc_A          102 DGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRNASMVALTYIGAEKAMPSYNTMGV  181 (280)
T ss_dssp             SSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCEEEEEECGGGTSCCTTTHHHHH
T ss_pred             CCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeccccccCCCCchhhHH
Confidence             47999999996431               1246789999999999887643   3469999999433334455678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       182 sKaal~~~~~~la  194 (280)
T 3nrc_A          182 AKASLEATVRYTA  194 (280)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=99.81  E-value=6.2e-20  Score=149.64  Aligned_cols=141  Identities=16%  Similarity=0.113  Sum_probs=108.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEe-cCCCCccc---c---cCCCceeEEEccCCCHh-------------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLS-RSGRSSLR---D---SWANNVIWHQGNLLSSD-------------  113 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~-r~~~~~~~---~---~~~~~~~~~~~D~~~~~-------------  113 (202)
                      .++++++||||+|+||++++++|+++|++|++++ |+......   .   ....++.++.+|++|++             
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~  123 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPV  123 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCC-------CCB
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhcCCeEEEEEeeCCCchhcccccccccccc
Confidence            4568999999999999999999999999999999 76532110   0   12357899999999998             


Q ss_pred             ----hHHHHhc-------CccEeEEccccCCC------------------------CccchhhhHHHHHHHHHHHH----
Q 028890          114 ----SWKEALD-------GVTAVISCVGGFGS------------------------NSYMYKINGTANINAIRAAS----  154 (202)
Q Consensus       114 ----~~~~~~~-------~~d~vi~~a~~~~~------------------------~~~~~~~n~~~~~~~~~~~~----  154 (202)
                          ++.++++       ++|++|||||....                        +...+++|+.++.++++++.    
T Consensus       124 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~  203 (328)
T 2qhx_A          124 TLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVA  203 (328)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                8887776       68999999996421                        12357889999998888764    


Q ss_pred             HcC------CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          155 EKG------VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       155 ~~~------~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.+      .++||++||.....+......|+.+|.+.+.+.+.++
T Consensus       204 ~~~~~~~~~~g~IV~isS~~~~~~~~~~~~Y~asKaal~~l~~~la  249 (328)
T 2qhx_A          204 GTPAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAA  249 (328)
T ss_dssp             HSCGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCcCCCCCcEEEEECchhhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence            334      5799999994322334456789999999999988763

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=99.81  E-value=8.7e-20  Score=145.39  Aligned_cols=141  Identities=16%  Similarity=0.091  Sum_probs=108.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc------CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD------GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~v  125 (202)
                      .++++++||||+|+||++++++|+++|++|++++|+.....  ......++.++.+|++|++++.++++      ++|++
T Consensus        28 l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~l  107 (281)
T 3ppi_A           28 FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAEFVSTNVTSEDSVLAAIEAANQLGRLRYA  107 (281)
T ss_dssp             GTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHTTSSEEEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHhCCCCeE
Confidence            46789999999999999999999999999999999754311  11224578999999999999888776      58999


Q ss_pred             EEcc-ccCCC---------------CccchhhhHHHHHHHHHHHHH----------cCCCEEEEEeccccCcCCcCCcch
Q 028890          126 ISCV-GGFGS---------------NSYMYKINGTANINAIRAASE----------KGVKRFVYISAADFGVANYLLQGY  179 (202)
Q Consensus       126 i~~a-~~~~~---------------~~~~~~~n~~~~~~~~~~~~~----------~~~~~~v~~SS~~~~~~~~~~~~Y  179 (202)
                      |||+ +....               +...+++|+.++.++.+++..          .+.++||++||...-.+......|
T Consensus       108 v~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y  187 (281)
T 3ppi_A          108 VVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGERGALVLTASIAGYEGQIGQTAY  187 (281)
T ss_dssp             EECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCCEEEEEECCGGGTSCCTTCHHH
T ss_pred             EEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCCeEEEEEecccccCCCCCCccc
Confidence            9994 43210               245678999999998887752          234599999994333344556789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.+.+.+.++
T Consensus       188 ~asKaa~~~~~~~la  202 (281)
T 3ppi_A          188 AAAKAGVIGLTIAAA  202 (281)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887753

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=99.81  E-value=2e-19  Score=144.39  Aligned_cols=125  Identities=26%  Similarity=0.377  Sum_probs=99.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC-CCc-----cc---ccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSS-----LR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~-~~~-----~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +++|+||||+|+||++++++|+++|++|++++|+. ...     ..   .....+++++.+|+.|++++.++++++|+||
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            57899999999999999999999999999999986 110     00   1113578999999999999999999999999


Q ss_pred             EccccCCCCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC------CcC-CcchHHHHHHHHHHHHHh
Q 028890          127 SCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA------NYL-LQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       127 ~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~------~~~-~~~Y~~sK~~~E~~~~~~  193 (202)
                      |+++...         +.++.+++++|++.+ +++||+ |+  ||..      ..+ ...| .+|..+|++++.+
T Consensus        82 ~~a~~~~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  143 (307)
T 2gas_A           82 CAAGRLL---------IEDQVKIIKAIKEAGNVKKFFP-SE--FGLDVDRHDAVEPVRQVF-EEKASIRRVIEAE  143 (307)
T ss_dssp             ECSSSSC---------GGGHHHHHHHHHHHCCCSEEEC-SC--CSSCTTSCCCCTTHHHHH-HHHHHHHHHHHHH
T ss_pred             ECCcccc---------cccHHHHHHHHHhcCCceEEee-cc--cccCcccccCCCcchhHH-HHHHHHHHHHHHc
Confidence            9998643         456778999999998 999984 43  3421      112 2468 9999999998864

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=99.81  E-value=1.7e-19  Score=143.02  Aligned_cols=140  Identities=13%  Similarity=0.035  Sum_probs=109.6

Q ss_pred             CCCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCCCCc---ccccCCCceeEEEccCCCHhhHHHHhc--------
Q 028890           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSGRSS---LRDSWANNVIWHQGNLLSSDSWKEALD--------  120 (202)
Q Consensus        54 ~~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~--------  120 (202)
                      .++|+++||||  +|+||++++++|+++|++|++++|+..+.   .......++.++.+|++|+++++++++        
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            45789999999  99999999999999999999999976431   111223468899999999999888776        


Q ss_pred             --CccEeEEccccCCC---------------CccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHH
Q 028890          121 --GVTAVISCVGGFGS---------------NSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 --~~d~vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                        ++|++|||||....               +...+++|+.++.++.+++...-  .++||++||... .+......|+.
T Consensus        85 ~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~iss~~~-~~~~~~~~Y~a  163 (269)
T 2h7i_A           85 GNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPS-RAMPAYNWMTV  163 (269)
T ss_dssp             TCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCS-SCCTTTHHHHH
T ss_pred             CCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEEEEcCccc-cccCchHHHHH
Confidence              79999999996431               13467899999999999986531  259999998322 23344578999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       164 sKaa~~~l~~~la  176 (269)
T 2h7i_A          164 AKSALESVNRFVA  176 (269)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=99.81  E-value=9.3e-20  Score=143.75  Aligned_cols=139  Identities=13%  Similarity=0.032  Sum_probs=104.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc--------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD--------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~--------  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|+......     .....++.++.+|++|++++.++++        
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g   82 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEAQSLGGQCVPVVCDSSQESEVRSLFEQVDREQQG   82 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999999999999997543111     0113468899999999988777653        


Q ss_pred             CccEeEEccc--cC-------C--------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEec-cccCcCCcCCcc
Q 028890          121 GVTAVISCVG--GF-------G--------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISA-ADFGVANYLLQG  178 (202)
Q Consensus       121 ~~d~vi~~a~--~~-------~--------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS-~~~~~~~~~~~~  178 (202)
                      ++|++|||||  ..       .        .+...+++|+.++.++.+++    ++.+.++||++|| ..+.  ..+...
T Consensus        83 ~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g~iv~isS~~~~~--~~~~~~  160 (260)
T 2qq5_A           83 RLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQGLIVVISSPGSLQ--YMFNVP  160 (260)
T ss_dssp             CCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCCEEEEECCGGGTS--CCSSHH
T ss_pred             CceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCcEEEEEcChhhcC--CCCCCc
Confidence            4799999994  21       1        12356678988887766655    3456689999999 3333  234578


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|.+.+.+.+.++
T Consensus       161 Y~asK~a~~~~~~~la  176 (260)
T 2qq5_A          161 YGVGKAACDKLAADCA  176 (260)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999988764

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=99.81  E-value=1.9e-19  Score=144.69  Aligned_cols=125  Identities=29%  Similarity=0.394  Sum_probs=99.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc--c------cccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--L------RDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~------~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      +++|+||||+|++|++++++|+++|++|++++|+....  .      ......+++++.+|+.|++++.++++++|+|||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            57899999999999999999999999999999986432  0      011246799999999999999999999999999


Q ss_pred             ccccCCCCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCC------cC-CcchHHHHHHHHHHHHHh
Q 028890          128 CVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVAN------YL-LQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       128 ~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~~------~~-~~~Y~~sK~~~E~~~~~~  193 (202)
                      +++...         +.++.+++++|++.+ +++||+ |+  ||...      .+ ...| .+|..+|++++..
T Consensus        84 ~a~~~~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  144 (308)
T 1qyc_A           84 TVGSLQ---------IESQVNIIKAIKEVGTVKRFFP-SE--FGNDVDNVHAVEPAKSVF-EVKAKVRRAIEAE  144 (308)
T ss_dssp             CCCGGG---------SGGGHHHHHHHHHHCCCSEEEC-SC--CSSCTTSCCCCTTHHHHH-HHHHHHHHHHHHH
T ss_pred             CCcchh---------hhhHHHHHHHHHhcCCCceEee-cc--cccCccccccCCcchhHH-HHHHHHHHHHHhc
Confidence            998632         445678999999998 999984 54  33211      12 2357 9999999999864

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=99.80  E-value=2e-19  Score=141.71  Aligned_cols=141  Identities=14%  Similarity=0.071  Sum_probs=108.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHH---CCCeEEEEecCCCCccc---cc----CCCceeEEEccCCCHhhHHHHhc---
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGRSSLR---DS----WANNVIWHQGNLLSSDSWKEALD---  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~---~g~~V~~l~r~~~~~~~---~~----~~~~~~~~~~D~~~~~~~~~~~~---  120 (202)
                      .++|+++||||+|+||++++++|++   +|++|++++|+.+....   ..    ...++.++.+|++|++++.++++   
T Consensus         4 l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~   83 (259)
T 1oaa_A            4 LGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAVR   83 (259)
T ss_dssp             CBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999999   89999999997543111   00    13468899999999998877654   


Q ss_pred             ------Ccc--EeEEccccCCC-------------CccchhhhHHHHHHHHHHHHHc------CCCEEEEEeccccCcCC
Q 028890          121 ------GVT--AVISCVGGFGS-------------NSYMYKINGTANINAIRAASEK------GVKRFVYISAADFGVAN  173 (202)
Q Consensus       121 ------~~d--~vi~~a~~~~~-------------~~~~~~~n~~~~~~~~~~~~~~------~~~~~v~~SS~~~~~~~  173 (202)
                            ++|  ++|||||....             +...+++|+.++.++.+++...      +.++||++||...-.+.
T Consensus        84 ~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~g~iv~isS~~~~~~~  163 (259)
T 1oaa_A           84 ELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQPY  163 (259)
T ss_dssp             HSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSCC
T ss_pred             hccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCceEEEEcCchhcCCC
Confidence                  358  99999996421             1246789999999999988653      23579999994222334


Q ss_pred             cCCcchHHHHHHHHHHHHHhc
Q 028890          174 YLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       174 ~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .+...|+.+|.+.+.+.+.++
T Consensus       164 ~~~~~Y~asKaa~~~~~~~la  184 (259)
T 1oaa_A          164 KGWGLYCAGKAARDMLYQVLA  184 (259)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHH
Confidence            456789999999999988764

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=99.80  E-value=2.1e-19  Score=145.22  Aligned_cols=125  Identities=24%  Similarity=0.323  Sum_probs=99.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +++|+||||+|++|++++++|+++|++|++++|+......   .....+++++.+|+.|++++.++++++|+|||+++..
T Consensus        11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~~   90 (318)
T 2r6j_A           11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAFP   90 (318)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred             CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCchh
Confidence            4589999999999999999999999999999998752211   1123578999999999999999999999999999863


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCC------cC-CcchHHHHHHHHHHHHHh
Q 028890          133 GSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVAN------YL-LQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~~------~~-~~~Y~~sK~~~E~~~~~~  193 (202)
                      .         +.++.+++++|++.+ +++||+ |+  ||...      .+ ...| .+|..+|++++.+
T Consensus        91 ~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  146 (318)
T 2r6j_A           91 Q---------ILDQFKILEAIKVAGNIKRFLP-SD--FGVEEDRINALPPFEALI-ERKRMIRRAIEEA  146 (318)
T ss_dssp             G---------STTHHHHHHHHHHHCCCCEEEC-SC--CSSCTTTCCCCHHHHHHH-HHHHHHHHHHHHT
T ss_pred             h---------hHHHHHHHHHHHhcCCCCEEEe-ec--cccCcccccCCCCcchhH-HHHHHHHHHHHhc
Confidence            2         456789999999998 999985 44  34211      11 2357 9999999999864

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=99.80  E-value=2.7e-19  Score=144.71  Aligned_cols=126  Identities=23%  Similarity=0.272  Sum_probs=99.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC-CCc---c-c---ccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSS---L-R---DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~-~~~---~-~---~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      ++|+|+||||+|+||++++++|+++|++|++++|+. ...   . .   .....+++++.+|+.|++++.++++++|+||
T Consensus         3 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi   82 (321)
T 3c1o_A            3 HMEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVI   82 (321)
T ss_dssp             -CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             cccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEE
Confidence            467899999999999999999999999999999986 210   0 0   0123578999999999999999999999999


Q ss_pred             EccccCCCCccchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcC------CcC-CcchHHHHHHHHHHHHHh
Q 028890          127 SCVGGFGSNSYMYKINGTANINAIRAASEKG-VKRFVYISAADFGVA------NYL-LQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       127 ~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~------~~~-~~~Y~~sK~~~E~~~~~~  193 (202)
                      ||++...         +.++.+++++|++.+ +++||+ |+  |+..      ..+ ...| .+|..+|++++..
T Consensus        83 ~~a~~~~---------~~~~~~l~~aa~~~g~v~~~v~-S~--~g~~~~~~~~~~p~~~~y-~sK~~~e~~~~~~  144 (321)
T 3c1o_A           83 SALPFPM---------ISSQIHIINAIKAAGNIKRFLP-SD--FGCEEDRIKPLPPFESVL-EKKRIIRRAIEAA  144 (321)
T ss_dssp             ECCCGGG---------SGGGHHHHHHHHHHCCCCEEEC-SC--CSSCGGGCCCCHHHHHHH-HHHHHHHHHHHHH
T ss_pred             ECCCccc---------hhhHHHHHHHHHHhCCccEEec-cc--cccCccccccCCCcchHH-HHHHHHHHHHHHc
Confidence            9998632         456678999999998 999983 43  4421      111 3468 9999999999864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=99.80  E-value=1.3e-18  Score=137.06  Aligned_cols=142  Identities=9%  Similarity=-0.053  Sum_probs=107.6

Q ss_pred             CCCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           53 PPPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      ..++|+++||||+|  +||+++++.|+++|++|++.+|+.....      ......++.++++|++|++++.++++    
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            45789999999876  9999999999999999999999864311      12223578999999999998877765    


Q ss_pred             ---CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHH
Q 028890          121 ---GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 ---~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                         ++|++|||||....              +...+++|+.++..+.+.+...  +-+++|++||.....+.+....|+.
T Consensus        83 ~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnisS~~~~~~~~~~~~Y~a  162 (256)
T 4fs3_A           83 DVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATTYLGGEFAVQNYNVMGV  162 (256)
T ss_dssp             HHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEECGGGTSCCTTTHHHHH
T ss_pred             HhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEeccccccCcccchhhHH
Confidence               58999999995321              1224567888887777776543  2359999999433334455678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       163 sKaal~~ltr~lA  175 (256)
T 4fs3_A          163 AKASLEANVKYLA  175 (256)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988754

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=99.80  E-value=1.8e-19  Score=155.07  Aligned_cols=127  Identities=15%  Similarity=0.046  Sum_probs=100.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC--
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG--  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~--  133 (202)
                      +|+|+||||+|+||++|+++|+++|++|++++|+..+.         ..+.+|+.+.  +.++++++|+|||+|+...  
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~---------~~v~~d~~~~--~~~~l~~~D~Vih~A~~~~~~  215 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKP---------GKRFWDPLNP--ASDLLDGADVLVHLAGEPIFG  215 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCT---------TCEECCTTSC--CTTTTTTCSEEEECCCC----
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCc---------cceeecccch--hHHhcCCCCEEEECCCCcccc
Confidence            78999999999999999999999999999999986542         2266777643  4567789999999999642  


Q ss_pred             -----CCccchhhhHHHHHHHHHH-HHHcCCCEEEEEec-cccC-cC---------CcCCcchHHHHHHHHHHHHHh
Q 028890          134 -----SNSYMYKINGTANINAIRA-ASEKGVKRFVYISA-ADFG-VA---------NYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~-~~~~~~~~~v~~SS-~~~~-~~---------~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                           .+...+++|+.++.+++++ +++.++++|||+|| .+|+ ..         ..+.+.|+.+|...|.++..+
T Consensus       216 ~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~r~V~~SS~~vyg~~~~~~~~~E~~~~~~~~y~~~~~~~E~~~~~~  292 (516)
T 3oh8_A          216 RFNDSHKEAIRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESESGDDFLAEVCRDWEHATAPA  292 (516)
T ss_dssp             -CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCCEEEEEEEGGGGCSEEEEEEECTTSCCCSSHHHHHHHHHHHTTHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCcceEecCCCCCCccCCCCCCCcChHHHHHHHHHHHHHHH
Confidence                 1234678899999999999 56677899999999 6777 21         124567999999999876543

>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae}

Probab=99.79  E-value=6.2e-19  Score=151.43  Aligned_cols=140  Identities=17%  Similarity=0.203  Sum_probs=111.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc------ccCCCceeEEEccCCCHhhHHHHhcC--cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR------DSWANNVIWHQGNLLSSDSWKEALDG--VT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~------~~~~~~~~~~~~D~~~~~~~~~~~~~--~d  123 (202)
                      .+++++||||+|+||.+++++|+++|+ +|++++|+....  ..      .....++.++.+|++|++++.+++++  +|
T Consensus       258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~~~ld  337 (511)
T 2z5l_A          258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAPGAAELAEELRGHGCEVVHAACDVAERDALAALVTAYPPN  337 (511)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHTTTCEEEEEECCSSCHHHHHHHHHHSCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHhcCCCc
Confidence            568999999999999999999999999 588889875321  00      11235688999999999999999875  99


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc-CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAASEK-GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      +||||||...+          ....+++|+.|+.++.+++... +.++||++||...-........|+.+|.+.|.+.+.
T Consensus       338 ~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~~V~~SS~a~~~g~~g~~~YaaaKa~ld~la~~  417 (511)
T 2z5l_A          338 AVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLDAFVLFSSVTGTWGNAGQGAYAAANAALDALAER  417 (511)
T ss_dssp             EEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCCCEEEEEEGGGTTCCTTBHHHHHHHHHHHHHHHH
T ss_pred             EEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeCHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence            99999997542          1346688999999999998776 778999999932222234457899999999999886


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      +.
T Consensus       418 ~~  419 (511)
T 2z5l_A          418 RR  419 (511)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A*

Probab=99.78  E-value=6.5e-19  Score=150.56  Aligned_cols=139  Identities=24%  Similarity=0.315  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCe-EEEEecCCCCcc--------cccCCCceeEEEccCCCHhhHHHHhcCc--
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSL--------RDSWANNVIWHQGNLLSSDSWKEALDGV--  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l~r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~~~--  122 (202)
                      ..+++++||||+|+||.+++++|+++|++ |++++|+.....        ......++.++.+|++|++++.++++++  
T Consensus       224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~i~~  303 (486)
T 2fr1_A          224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGD  303 (486)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcHHHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHHHHHHHh
Confidence            35689999999999999999999999995 899999764210        0112357899999999999999988764  


Q ss_pred             ----cEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcCCCEEEEEecc--ccCcCCcCCcchHHHHHHH
Q 028890          123 ----TAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAA--DFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       123 ----d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~--~~~~~~~~~~~Y~~sK~~~  186 (202)
                          |+||||||...+          ....+++|+.|+.++.+++.+.+.++||++||.  .++  ......|+.+|.+.
T Consensus       304 ~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~~V~~SS~a~~~g--~~g~~~Yaaaka~l  381 (486)
T 2fr1_A          304 DVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFG--APGLGGYAPGNAYL  381 (486)
T ss_dssp             TSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTC--CTTCTTTHHHHHHH
T ss_pred             cCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCCEEEEEcChHhcCC--CCCCHHHHHHHHHH
Confidence                999999997542          134678899999999999988888999999993  333  33457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.+.
T Consensus       382 ~~la~~~~  389 (486)
T 2fr1_A          382 DGLAQQRR  389 (486)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98877653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=99.78  E-value=1.3e-19  Score=141.68  Aligned_cols=139  Identities=14%  Similarity=0.037  Sum_probs=94.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhH---HHHh---cCccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW---KEAL---DGVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~---~~~~---~~~d~vi~  127 (202)
                      .++++++||||+|+||++++++|++ |++|++++|+...........++.++.+|+.+.+..   .+.+   .++|++||
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            3578999999999999999999987 999999999764422212235788999999877541   1122   26899999


Q ss_pred             ccccCCC----------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          128 CVGGFGS----------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       128 ~a~~~~~----------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |||....          +...+++|+.++.++.+++.    +.+ +++|++||...-.+......|+.+|.+.+.+++.+
T Consensus        82 ~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~~~~l  160 (245)
T 3e9n_A           82 AAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-GCVIYINSGAGNGPHPGNTIYAASKHALRGLADAF  160 (245)
T ss_dssp             CC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEC----------CHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-CeEEEEcCcccccCCCCchHHHHHHHHHHHHHHHH
Confidence            9996431          23567899999888777763    344 79999999432233445678999999999998876


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      +
T Consensus       161 a  161 (245)
T 3e9n_A          161 R  161 (245)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=99.78  E-value=3.7e-19  Score=139.90  Aligned_cols=137  Identities=13%  Similarity=-0.020  Sum_probs=96.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc----cCCCceeEEEccCCCHhhHH----HHhcCccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWK----EALDGVTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~----~~~~~~~~~~~D~~~~~~~~----~~~~~~d~vi~  127 (202)
                      ||+++||||+|+||++++++|+++|++|++++|+.......    ....++..+  |..+.+.+.    +.+.++|++||
T Consensus         1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~--d~~~v~~~~~~~~~~~g~iD~lv~   78 (254)
T 1zmt_A            1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPM--SEQEPAELIEAVTSAYGQVDVLVS   78 (254)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHCTTSEEC--CCCSHHHHHHHHHHHHSCCCEEEE
T ss_pred             CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCcEEEE--CHHHHHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999999999999999976542110    012233333  444332221    12237999999


Q ss_pred             ccccC-C----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          128 CVGGF-G----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       128 ~a~~~-~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||.. .          .+...+++|+.++.++.+++.    +.+.++||++||...-.+......|+.+|.+.+.+.+.
T Consensus        79 nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g~iv~isS~~~~~~~~~~~~Y~~sK~a~~~~~~~  158 (254)
T 1zmt_A           79 NDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANA  158 (254)
T ss_dssp             ECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECCcccccCCCCchHHHHHHHHHHHHHHH
Confidence            99965 2          124577899999998888763    45667999999943223344567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       159 la  160 (254)
T 1zmt_A          159 LS  160 (254)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A

Probab=99.78  E-value=5.1e-19  Score=150.01  Aligned_cols=141  Identities=14%  Similarity=0.027  Sum_probs=109.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------C-cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------G-VT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~-~d  123 (202)
                      .++++++||||+|+||.++++.|+++|++|++++|+......  .....++.++.+|++|+++++++++       + +|
T Consensus       211 l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~~l~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~~~~g~~id  290 (454)
T 3u0b_A          211 LDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAEDLKRVADKVGGTALTLDVTADDAVDKITAHVTEHHGGKVD  290 (454)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHHHTCEEEECCTTSTTHHHHHHHHHHHHSTTCCS
T ss_pred             CCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHHcCCCce
Confidence            367899999999999999999999999999999986432111  0111256789999999998887765       3 99


Q ss_pred             EeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc----CCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFGS----------NSYMYKINGTANINAIRAASEK----GVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~----~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +||||||...+          +...+++|+.+++++.+++...    +.++||++||...-........|+.+|.+.+.+
T Consensus       291 ~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g~iV~iSS~a~~~g~~g~~~YaasKaal~~l  370 (454)
T 3u0b_A          291 ILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGGRVIGLSSMAGIAGNRGQTNYATTKAGMIGL  370 (454)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTCEEEEECCHHHHHCCTTCHHHHHHHHHHHHH
T ss_pred             EEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCEEEEEeChHhCCCCCCCHHHHHHHHHHHHH
Confidence            99999997542          2456889999999999998765    567999999932222344567899999988888


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       371 ~~~la  375 (454)
T 3u0b_A          371 AEALA  375 (454)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A*

Probab=99.77  E-value=3.5e-18  Score=146.07  Aligned_cols=140  Identities=18%  Similarity=0.204  Sum_probs=111.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcc--c------ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL--R------DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~--~------~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .+++++||||+|+||.+++++|+++|+ +|+++.|+.....  .      .....++.++.+|++|++++.++++     
T Consensus       238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~~~~~l~~~l~~~g~~v~~~~~Dvtd~~~v~~~~~~i~~~  317 (496)
T 3mje_A          238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAPGAAELRAELEQLGVRVTIAACDAADREALAALLAELPED  317 (496)
T ss_dssp             CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTCCTT
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHh
Confidence            458999999999999999999999998 7888888643211  0      1124578999999999999999886     


Q ss_pred             -CccEeEEccccC-CC----------CccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          121 -GVTAVISCVGGF-GS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       121 -~~d~vi~~a~~~-~~----------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                       ++|+||||||.. .+          +...+++|+.|+.++.+++...+.++||++||...-........|+.+|.+.+.
T Consensus       318 g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~~iV~~SS~a~~~g~~g~~~YaAaKa~lda  397 (496)
T 3mje_A          318 APLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLDAFVLFSSGAAVWGSGGQPGYAAANAYLDA  397 (496)
T ss_dssp             SCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCSEEEEEEEHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEEeChHhcCCCCCcHHHHHHHHHHHH
Confidence             379999999975 21          235678999999999999998888899999993222223445789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.+.
T Consensus       398 la~~~~  403 (496)
T 3mje_A          398 LAEHRR  403 (496)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988754

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=99.76  E-value=3.3e-19  Score=139.41  Aligned_cols=136  Identities=13%  Similarity=0.068  Sum_probs=94.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEE-e--cCCCCccc--ccCCCceeEEEccCCCHhhH-HHHh---cCccEeE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASL-S--RSGRSSLR--DSWANNVIWHQGNLLSSDSW-KEAL---DGVTAVI  126 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l-~--r~~~~~~~--~~~~~~~~~~~~D~~~~~~~-~~~~---~~~d~vi  126 (202)
                      +|+++||||+|+||++++++|+++|++|+++ +  |+.+....  ... .+..+.  |..+.+.+ +++.   .++|++|
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~~~~g~iD~lv   77 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESEN-PGTIAL--AEQKPERLVDATLQHGEAIDTIV   77 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHS-TTEEEC--CCCCGGGHHHHHGGGSSCEEEEE
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHh-CCCccc--CHHHHHHHHHHHHHHcCCCCEEE
Confidence            4789999999999999999999999999999 6  87533111  111 122222  43333322 2222   2689999


Q ss_pred             EccccCCC-------------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          127 SCVGGFGS-------------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       127 ~~a~~~~~-------------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ||||....             +...+++|+.++.++.+++.    +.+.++||++||...-.+......|+.+|.+.+.+
T Consensus        78 ~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g~iv~isS~~~~~~~~~~~~Y~asK~a~~~~  157 (244)
T 1zmo_A           78 SNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGASVIFITSSVGKKPLAYNPLYGPARAATVAL  157 (244)
T ss_dssp             ECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCGGGTSCCTTCTTHHHHHHHHHHH
T ss_pred             ECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcEEEEECChhhCCCCCCchHHHHHHHHHHHH
Confidence            99996432             23467899999998888764    45567999999932222344567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       158 ~~~la  162 (244)
T 1zmo_A          158 VESAA  162 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88763

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=99.76  E-value=3.5e-18  Score=138.77  Aligned_cols=140  Identities=16%  Similarity=0.141  Sum_probs=101.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC-------C-ccc----ccCCCceeEEEccCCCHhhHHHHhc-
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR-------S-SLR----DSWANNVIWHQGNLLSSDSWKEALD-  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~-------~-~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-  120 (202)
                      .++|+++||||+|+||++++++|+++|++|++++|...       . ...    ...... ....+|+.|.+++.++++ 
T Consensus         7 l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~-~~~~~D~~~~~~~~~~~~~   85 (319)
T 1gz6_A            7 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRG-GKAVANYDSVEAGEKLVKT   85 (319)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTT-CEEEEECCCGGGHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhC-CeEEEeCCCHHHHHHHHHH
Confidence            46789999999999999999999999999999866421       0 000    000011 123579999887666543 


Q ss_pred             ------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchH
Q 028890          121 ------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYY  180 (202)
Q Consensus       121 ------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~  180 (202)
                            ++|++|||||....          +...+++|+.|+.++.+++    ++.+.++||++||...-.+..+...|+
T Consensus        86 ~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~grIV~vsS~~~~~~~~~~~~Y~  165 (319)
T 1gz6_A           86 ALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYS  165 (319)
T ss_dssp             HHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCCHHHH
Confidence                  68999999996432          2356789999999888776    445667999999932111233567899


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .||.+.+.+.+.++
T Consensus       166 aSK~a~~~~~~~la  179 (319)
T 1gz6_A          166 AAKLGLLGLANTLV  179 (319)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988764

>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae}

Probab=99.74  E-value=8.5e-18  Score=144.83  Aligned_cols=141  Identities=16%  Similarity=0.136  Sum_probs=109.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCe-EEEE-ecCCCC------------ccc------ccCCCceeEEEccCCCHh
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLT-VASL-SRSGRS------------SLR------DSWANNVIWHQGNLLSSD  113 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l-~r~~~~------------~~~------~~~~~~~~~~~~D~~~~~  113 (202)
                      ..+++++||||+|+||.++++.|+++|++ |+++ .|+...            ...      .....++.++.+|++|++
T Consensus       249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvtd~~  328 (525)
T 3qp9_A          249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGAAEDSGLAGLVAELADLGATATVVTCDLTDAE  328 (525)
T ss_dssp             CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC---------------CHHHHHHHHHHTCEEEEEECCTTSHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCccccccccccCHHHHHHHHHHHhcCCEEEEEECCCCCHH
Confidence            35789999999999999999999999997 5555 777422            000      112357899999999999


Q ss_pred             hHHHHhcC------ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcC-----CCEEEEEeccccCcC
Q 028890          114 SWKEALDG------VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKG-----VKRFVYISAADFGVA  172 (202)
Q Consensus       114 ~~~~~~~~------~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~-----~~~~v~~SS~~~~~~  172 (202)
                      ++.++++.      +|+||||||...+          +...+++|+.|+.++.+++....     .++||++||...-..
T Consensus       329 ~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~~iV~~SS~a~~~g  408 (525)
T 3qp9_A          329 AAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPPVLVLFSSVAAIWG  408 (525)
T ss_dssp             HHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCCEEEEEEEGGGTTC
T ss_pred             HHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCEEEEECCHHHcCC
Confidence            99998864      6999999997542          24577899999999999987765     789999999332233


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ......|+.+|.+.+.+.+.+.
T Consensus       409 ~~g~~~YaaaKa~l~~lA~~~~  430 (525)
T 3qp9_A          409 GAGQGAYAAGTAFLDALAGQHR  430 (525)
T ss_dssp             CTTCHHHHHHHHHHHHHHTSCC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Confidence            4456789999999999876653

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=99.74  E-value=3e-17  Score=131.54  Aligned_cols=119  Identities=15%  Similarity=0.121  Sum_probs=86.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC--C-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF--G-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~--~-  133 (202)
                      |||+|||||||||++|+++|+++||+|++++|++...       .   +..|    +...+.++++|+|||+|+..  . 
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~~-------~---~~~~----~~~~~~l~~~d~vihla~~~i~~~   66 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGPG-------R---ITWD----ELAASGLPSCDAAVNLAGENILNP   66 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCTT-------E---EEHH----HHHHHCCCSCSEEEECCCCCSSCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCcC-------e---eecc----hhhHhhccCCCEEEEeccCcccch
Confidence            6899999999999999999999999999999975432       1   2222    22345678999999999842  1 


Q ss_pred             --CC-----ccchhhhHHHHHHHHHHHHHcCCC--EEEEEec-cccCcCC----------cCCcchHHHHHHHHHH
Q 028890          134 --SN-----SYMYKINGTANINAIRAASEKGVK--RFVYISA-ADFGVAN----------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       134 --~~-----~~~~~~n~~~~~~~~~~~~~~~~~--~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~~  189 (202)
                        .+     ...++.|+.++.+++++++..+.+  +||+.|| .+|+...          .+...|+..|...|..
T Consensus        67 ~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E~~p~~~~~~~~~~~~~~e~~  142 (298)
T 4b4o_A           67 LRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDEDSPGGDFDFFSNLVTKWEAA  142 (298)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCTTCCCSCSSHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccccCCccccchhHHHHHHHHHH
Confidence              11     235678999999999999887654  5888888 6676432          1234566666666654

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=99.70  E-value=1.4e-17  Score=146.11  Aligned_cols=141  Identities=13%  Similarity=0.082  Sum_probs=100.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC---------CCccc---ccCCCceeEEEccCCCHhhHHHHhc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG---------RSSLR---DSWANNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~---------~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|..         .....   ....... ...+|+.|.+++.++++
T Consensus        16 ~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~D~~d~~~~~~~~~   94 (613)
T 3oml_A           16 RYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGG-EAVADYNSVIDGAKVIE   94 (613)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTC-CEEECCCCGGGHHHHHC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCC-eEEEEeCCHHHHHHHHH
Confidence            45789999999999999999999999999999998822         11100   0000111 23479999988887776


Q ss_pred             -------CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcch
Q 028890          121 -------GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGY  179 (202)
Q Consensus       121 -------~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y  179 (202)
                             ++|++|||||....          +...+++|+.|+.++.+++    ++.+.++||++||...-.+......|
T Consensus        95 ~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g~IV~isS~a~~~~~~~~~~Y  174 (613)
T 3oml_A           95 TAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYGRIIMTSSNSGIYGNFGQVNY  174 (613)
T ss_dssp             ----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEECCHHHHHCCTTCHHH
T ss_pred             HHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCChHH
Confidence                   48999999996432          3457889999999988887    45566799999993222233456789


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.||.+.+.+.+.++
T Consensus       175 ~asKaal~~lt~~la  189 (613)
T 3oml_A          175 TAAKMGLIGLANTVA  189 (613)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ...

Probab=99.67  E-value=4.7e-16  Score=126.65  Aligned_cols=139  Identities=6%  Similarity=-0.080  Sum_probs=100.4

Q ss_pred             CCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCC---------C---C-cc-cc---cCCCceeEEEccCCCH--h-
Q 028890           56 SEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSG---------R---S-SL-RD---SWANNVIWHQGNLLSS--D-  113 (202)
Q Consensus        56 ~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~---------~---~-~~-~~---~~~~~~~~~~~D~~~~--~-  113 (202)
                      +|+++||||++  +||.+++++|+++|++|++.+|++         .   . .. ..   .....+.++.+|+.+.  + 
T Consensus         2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~   81 (329)
T 3lt0_A            2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHHTTTTTGGGBCSSSCBCCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchHHHHHHHHHHHhhcccccccccccccccccchhh
Confidence            57999999875  999999999999999999776543         1   1 00 01   1123467888998876  6 


Q ss_pred             -----------------hHHHHhc-------CccEeEEccccCC------------CCccchhhhHHHHHHHHHHHHHcC
Q 028890          114 -----------------SWKEALD-------GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASEKG  157 (202)
Q Consensus       114 -----------------~~~~~~~-------~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~~~~  157 (202)
                                       ++.++++       ++|++|||||...            .+...+++|+.++..+.+++...-
T Consensus        82 ~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m  161 (329)
T 3lt0_A           82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM  161 (329)
T ss_dssp             CCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             hhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence                             6665554       5899999999531            124578999999999999886531


Q ss_pred             --CCEEEEEeccccCcCCcCCc-chHHHHHHHHHHHHHhc
Q 028890          158 --VKRFVYISAADFGVANYLLQ-GYYEGKVLSSDVAACQS  194 (202)
Q Consensus       158 --~~~~v~~SS~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~  194 (202)
                        -++||++||.....+..... .|+.||.+.+.+.+.++
T Consensus       162 ~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~~~~~la  201 (329)
T 3lt0_A          162 KPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVLA  201 (329)
T ss_dssp             EEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             hhCCeEEEEeCccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence              15999999942222333343 89999999998888753

>1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A*

Probab=99.66  E-value=1.2e-15  Score=122.36  Aligned_cols=141  Identities=6%  Similarity=-0.094  Sum_probs=95.6

Q ss_pred             CCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCC-----------CC--cccccCCCc----eeEEEcc------
Q 028890           54 PPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSG-----------RS--SLRDSWANN----VIWHQGN------  108 (202)
Q Consensus        54 ~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~-----------~~--~~~~~~~~~----~~~~~~D------  108 (202)
                      .++|+++||||+  |+||++++++|+++|++|++++|++           ..  .........    ...+.+|      
T Consensus         6 l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (297)
T 1d7o_A            6 LRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDNP   85 (297)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCSG
T ss_pred             cCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhhhhhhhccccccccccccccceeccch
Confidence            467899999999  9999999999999999999987531           11  111110111    2333433      


Q ss_pred             --CC----C--------HhhHHHHhc-------CccEeEEccccCC------------CCccchhhhHHHHHHHHHHHHH
Q 028890          109 --LL----S--------SDSWKEALD-------GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE  155 (202)
Q Consensus       109 --~~----~--------~~~~~~~~~-------~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~~  155 (202)
                        +.    |        +++++++++       ++|++|||||...            .+...+++|+.++.++.+++..
T Consensus        86 ~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~  165 (297)
T 1d7o_A           86 EDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFLP  165 (297)
T ss_dssp             GGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGG
T ss_pred             hhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHH
Confidence              22    2        444554443       6899999998521            1235778999999999999865


Q ss_pred             c--CCCEEEEEeccccCcCCcCC-cchHHHHHHHHHHHHHhc
Q 028890          156 K--GVKRFVYISAADFGVANYLL-QGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       156 ~--~~~~~v~~SS~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~  194 (202)
                      .  ..++||++||.....+.... ..|+.+|.+.+.+.+.++
T Consensus       166 ~m~~~g~iv~isS~~~~~~~~~~~~~Y~asKaa~~~~~~~la  207 (297)
T 1d7o_A          166 IMNPGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVLA  207 (297)
T ss_dssp             GEEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             HhccCceEEEEeccccccCCCCcchHHHHHHHHHHHHHHHHH
Confidence            4  12599999993222222333 589999999999988764

>2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A*

Probab=99.66  E-value=5.1e-16  Score=125.63  Aligned_cols=140  Identities=10%  Similarity=-0.102  Sum_probs=96.1

Q ss_pred             CCCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCC-----------CC--cccccCCC----ceeEEEccC-----
Q 028890           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSG-----------RS--SLRDSWAN----NVIWHQGNL-----  109 (202)
Q Consensus        54 ~~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~-----------~~--~~~~~~~~----~~~~~~~D~-----  109 (202)
                      .++|+++||||  +|+||++++++|+++|++|++++|++           ..  ........    ...++.+|+     
T Consensus         7 l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~   86 (315)
T 2o2s_A            7 LRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGRLDEDRKLPDGSLIEFAGVYPLDAAFDKP   86 (315)
T ss_dssp             CTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTTTHHHHBCTTSCBCCCSCEEECCTTCSST
T ss_pred             CCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhhhhhhhhhhcccccccccccccccccccc
Confidence            46789999999  89999999999999999999998642           11  00011011    134444443     


Q ss_pred             -------CC--------HhhHHHHhc-------CccEeEEccccCC------------CCccchhhhHHHHHHHHHHHHH
Q 028890          110 -------LS--------SDSWKEALD-------GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASE  155 (202)
Q Consensus       110 -------~~--------~~~~~~~~~-------~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~~  155 (202)
                             +|        +++++++++       ++|++|||||...            .+...+++|+.++.++.+++..
T Consensus        87 ~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~  166 (315)
T 2o2s_A           87 EDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFVSLLQHFGP  166 (315)
T ss_dssp             TSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHST
T ss_pred             chhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHH
Confidence                   32        445555443       6899999998531            1235678999999999999865


Q ss_pred             cC--CCEEEEEecc-ccCcCCcCC-cchHHHHHHHHHHHHHhc
Q 028890          156 KG--VKRFVYISAA-DFGVANYLL-QGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       156 ~~--~~~~v~~SS~-~~~~~~~~~-~~Y~~sK~~~E~~~~~~~  194 (202)
                      .-  .++||++||. .+. +.... ..|+.+|.+.+.+.+.++
T Consensus       167 ~m~~~g~Iv~isS~~~~~-~~~~~~~~Y~asKaal~~l~~~la  208 (315)
T 2o2s_A          167 IMNEGGSAVTLSYLAAER-VVPGYGGGMSSAKAALESDTRTLA  208 (315)
T ss_dssp             TEEEEEEEEEEEEGGGTS-CCTTCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEecccccc-cCCCccHHHHHHHHHHHHHHHHHH
Confidence            31  2599999993 322 22233 479999999999988764

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=99.65  E-value=5.2e-17  Score=132.27  Aligned_cols=139  Identities=11%  Similarity=0.020  Sum_probs=102.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      ++++|+||||+||||++++..|+++|+       +|+++++......     .......+.++ .|+.+.+.+.++++++
T Consensus         3 ~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~~-~di~~~~~~~~a~~~~   81 (327)
T 1y7t_A            3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLL-AGLEATDDPKVAFKDA   81 (327)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTE-EEEEEESCHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhhccchhhhhhccccccc-CCeEeccChHHHhCCC
Confidence            346899999999999999999999986       8999987641100     01111122333 6777767788889999


Q ss_pred             cEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcC-CC-EEEEEeccc----c---Cc--CCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFGS----NSYMYKINGTANINAIRAASEKG-VK-RFVYISAAD----F---GV--ANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~-~~-~~v~~SS~~----~---~~--~~~~~~~Y~~sK~~~E  187 (202)
                      |+|||+||....    ....++.|+.++.++++++++.+ .+ +++++|+..    +   ..  ..++...|+.+|...|
T Consensus        82 D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~~~~~~~~~~~~p~~~yg~tkl~~e  161 (327)
T 1y7t_A           82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNALIAYKNAPGLNPRNFTAMTRLDHN  161 (327)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHHHHHTCTTSCGGGEEECCHHHHH
T ss_pred             CEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhHHHHHHHcCCCChhheeccchHHHH
Confidence            999999996542    24577899999999999999985 65 788887732    0   11  1334567999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      ++...++
T Consensus       162 r~~~~~a  168 (327)
T 1y7t_A          162 RAKAQLA  168 (327)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887654

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.64  E-value=6e-16  Score=135.36  Aligned_cols=141  Identities=13%  Similarity=0.110  Sum_probs=101.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-c--ccCCCceeEEEccC-CCHhhH-HHH---hcCccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-R--DSWANNVIWHQGNL-LSSDSW-KEA---LDGVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~--~~~~~~~~~~~~D~-~~~~~~-~~~---~~~~d~v  125 (202)
                      .++|+++||||+++||++++++|+++|++|++.+|+..... .  .....++..+.+|+ .+.+.+ +++   +.++|++
T Consensus       320 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~~~~~~~~~~~~~~~G~iDiL  399 (604)
T 2et6_A          320 LKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDATKTVDEIKAAGGEAWPDQHDVAKDSEAIIKNVIDKYGTIDIL  399 (604)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHSCCCEE
T ss_pred             cCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHHhcCCCCEE
Confidence            46789999999999999999999999999999886432211 1  11134566778888 554432 222   3369999


Q ss_pred             EEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          126 ISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       126 i~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      |||||...          +++..+++|+.|+.++.+++    ++.+-++||++||...-.+......|+.||.+...+.+
T Consensus       400 VnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~asKaal~~lt~  479 (604)
T 2et6_A          400 VNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFGRIINITSTSGIYGNFGQANYSSSKAGILGLSK  479 (604)
T ss_dssp             EECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHSCCTTBHHHHHHHHHHHHHHH
T ss_pred             EECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECChhhccCCCCChhHHHHHHHHHHHHH
Confidence            99999643          23457899999999887766    34455699999993222233445789999999999888


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       480 ~la  482 (604)
T 2et6_A          480 TMA  482 (604)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*

Probab=99.63  E-value=3.2e-15  Score=123.62  Aligned_cols=141  Identities=12%  Similarity=-0.011  Sum_probs=100.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHH-CCCeEEEEecCCCCccc-----------------ccCCCceeEEEccCCCHhhH
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLR-----------------DSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~-~g~~V~~l~r~~~~~~~-----------------~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ..+|+++||||+++||.++++.|++ +|++|++++|+......                 ......+..+.+|++|++++
T Consensus        45 ~~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~~~~~gwyn~~~~~~~~~~~G~~a~~i~~Dvtd~~~v  124 (405)
T 3zu3_A           45 NGPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGKPGTSGWYNSAAFHKFAAQKGLYAKSINGDAFSDEIK  124 (405)
T ss_dssp             TCCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTBCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhhcccccchhHHHHHHHHHhcCCceEEEECCCCCHHHH
Confidence            4578999999999999999999999 99999999887543210                 11234678899999999988


Q ss_pred             HHHhc-------CccEeEEccccC---------------CC-----------------------------CccchhhhHH
Q 028890          116 KEALD-------GVTAVISCVGGF---------------GS-----------------------------NSYMYKINGT  144 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~---------------~~-----------------------------~~~~~~~n~~  144 (202)
                      +++++       ++|++|||||..               .+                             ++..+++|..
T Consensus       125 ~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~Vn~~  204 (405)
T 3zu3_A          125 QLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVAVMGG  204 (405)
T ss_dssp             HHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhhch
Confidence            77665       589999999863               01                             1224456666


Q ss_pred             HHH-HHHHHHHHcC----CCEEEEEeccccCcCCcC--CcchHHHHHHHHHHHHHhc
Q 028890          145 ANI-NAIRAASEKG----VKRFVYISAADFGVANYL--LQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       145 ~~~-~~~~~~~~~~----~~~~v~~SS~~~~~~~~~--~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.+ .+++++....    -.++|++||.....+.+.  ...|+.+|...+.+.+.++
T Consensus       205 ~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~p~~~~~aY~AaKaal~~ltrsLA  261 (405)
T 3zu3_A          205 EDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITHDIYWNGSIGAAKKDLDQKVLAIR  261 (405)
T ss_dssp             HHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcCCCccchHHHHHHHHHHHHHHHHH
Confidence            655 4555543321    258999999322222222  3789999999999988764

>2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella}

Probab=99.61  E-value=9.5e-16  Score=124.22  Aligned_cols=141  Identities=9%  Similarity=-0.078  Sum_probs=84.4

Q ss_pred             CCCCeEEEEcc--CChhHHHHHHHHHHCCCeEEEEecCC----------CCcccc---------------cCC-----Cc
Q 028890           54 PPSEKLLVLGG--NGFVGSHICREALDRGLTVASLSRSG----------RSSLRD---------------SWA-----NN  101 (202)
Q Consensus        54 ~~~~~vlVtGa--~G~iG~~l~~~Ll~~g~~V~~l~r~~----------~~~~~~---------------~~~-----~~  101 (202)
                      .++|+++||||  +|+||++++++|+++|++|++++|++          ......               ...     ..
T Consensus         7 l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (319)
T 2ptg_A            7 LRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESSRFEQDSFYAQEPSSKVAAEAAEKPVDLVF   86 (319)
T ss_dssp             CTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC--------------------------------CC
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhhhhhhhhhhhcchhhhHHHHhhhccccccc
Confidence            35789999999  89999999999999999999998642          000000               000     01


Q ss_pred             eeEEEccC------------CC--------HhhHHHHhc-------CccEeEEccccCC------------CCccchhhh
Q 028890          102 VIWHQGNL------------LS--------SDSWKEALD-------GVTAVISCVGGFG------------SNSYMYKIN  142 (202)
Q Consensus       102 ~~~~~~D~------------~~--------~~~~~~~~~-------~~d~vi~~a~~~~------------~~~~~~~~n  142 (202)
                      ..++.+|+            +|        +++++++++       ++|++|||||...            .+...+++|
T Consensus        87 ~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~vN  166 (319)
T 2ptg_A           87 DKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAVSSS  166 (319)
T ss_dssp             SEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHHhHh
Confidence            24444442            22        234554443       6899999998531            123567899


Q ss_pred             HHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCC-cchHHHHHHHHHHHHHhc
Q 028890          143 GTANINAIRAASEKG--VKRFVYISAADFGVANYLL-QGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       143 ~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.++.++.+++...-  .++||++||.....+.... ..|+.+|.+.+.+.+.++
T Consensus       167 ~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~~Y~asKaal~~l~~~la  221 (319)
T 2ptg_A          167 SYSFVSLLQHFLPLMKEGGSALALSYIASEKVIPGYGGGMSSAKAALESDCRTLA  221 (319)
T ss_dssp             THHHHHHHHHHGGGEEEEEEEEEEEECC------------------THHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCceEEEEeccccccccCccchhhHHHHHHHHHHHHHHH
Confidence            999999999986541  2699999993222222233 579999999999888754

>2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis}

Probab=99.60  E-value=1.3e-15  Score=133.21  Aligned_cols=140  Identities=14%  Similarity=0.109  Sum_probs=96.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC--------Cccc----ccCCCceeEEEccCCCHhhHHHHh--
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR--------SSLR----DSWANNVIWHQGNLLSSDSWKEAL--  119 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~--------~~~~----~~~~~~~~~~~~D~~~~~~~~~~~--  119 (202)
                      .++|+++||||+++||+++++.|+++|++|++.+|+..        ....    .....+-. ..+|+.|.+++++++  
T Consensus         6 l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~gr~~~~~~~~~~~i~~~g~~-~~~d~~d~~~~~~~v~~   84 (604)
T 2et6_A            6 FKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQGGNSKAADVVVDEIVKNGGV-AVADYNNVLDGDKIVET   84 (604)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC-----------CHHHHHHHHHHHTTCE-EEEECCCTTCHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCccccccccchHHHHHHHHHHHhcCCe-EEEEcCCHHHHHHHHHH
Confidence            46789999999999999999999999999999887641        1100    00001112 235766654433332  


Q ss_pred             -----cCccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchH
Q 028890          120 -----DGVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYY  180 (202)
Q Consensus       120 -----~~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~  180 (202)
                           .++|++|||||...          +++..+++|+.|+..+.+++    ++.+.++||++||...-.+......|+
T Consensus        85 ~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G~IVnisS~ag~~~~~~~~~Y~  164 (604)
T 2et6_A           85 AVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYGRIVNTSSPAGLYGNFGQANYA  164 (604)
T ss_dssp             HHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTBHHHH
T ss_pred             HHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCEEEEECCHHHcCCCCCchHHH
Confidence                 36999999999642          23567899999999877765    445557999999932222334457899


Q ss_pred             HHHHHHHHHHHHhc
Q 028890          181 EGKVLSSDVAACQS  194 (202)
Q Consensus       181 ~sK~~~E~~~~~~~  194 (202)
                      .||.+.+.+.+.++
T Consensus       165 asKaal~~lt~~la  178 (604)
T 2et6_A          165 SAKSALLGFAETLA  178 (604)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999988754

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.59  E-value=2.8e-15  Score=134.83  Aligned_cols=139  Identities=17%  Similarity=0.274  Sum_probs=108.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHH-HCCC-eEEEEecCCCCcc--c------ccCCCceeEEEccCCCHhhHHHHhc---
Q 028890           54 PPSEKLLVLGGNGFVGSHICREAL-DRGL-TVASLSRSGRSSL--R------DSWANNVIWHQGNLLSSDSWKEALD---  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll-~~g~-~V~~l~r~~~~~~--~------~~~~~~~~~~~~D~~~~~~~~~~~~---  120 (202)
                      ..+++++||||+|+||+++++.|. ++|+ +|++++|+.....  .      .....++.++.+|++|++++.++++   
T Consensus       528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~G~~v~~~~~Dvsd~~~v~~~~~~~~  607 (795)
T 3slk_A          528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAASGAAELVAQLTAYGAEVSLQACDVADRETLAKVLASIP  607 (795)
T ss_dssp             CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSC
T ss_pred             ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            357899999999999999999999 7898 5888899843211  0      1124578999999999999998886   


Q ss_pred             ---CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          121 ---GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 ---~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                         .+|+||||||...+          +...+++|+.|++++.+++.. .. +||++||...-........|+++|.+.+
T Consensus       608 ~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~-~l-~iV~~SS~ag~~g~~g~~~YaAaka~~~  685 (795)
T 3slk_A          608 DEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDP-DV-ALVLFSSVSGVLGSGGQGNYAAANSFLD  685 (795)
T ss_dssp             TTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCT-TS-EEEEEEETHHHHTCSSCHHHHHHHHHHH
T ss_pred             HhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhh-CC-EEEEEccHHhcCCCCCCHHHHHHHHHHH
Confidence               36999999997542          345778999999999998733 34 9999999432233455678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.+.
T Consensus       686 alA~~~~  692 (795)
T 3slk_A          686 ALAQQRQ  692 (795)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888764

>3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV}

Probab=99.58  E-value=7.1e-15  Score=122.46  Aligned_cols=140  Identities=16%  Similarity=0.042  Sum_probs=97.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHH-CCCeEEEEecCCCCccc-----------------ccCCCceeEEEccCCCHhhHH
Q 028890           55 PSEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGRSSLR-----------------DSWANNVIWHQGNLLSSDSWK  116 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~-~g~~V~~l~r~~~~~~~-----------------~~~~~~~~~~~~D~~~~~~~~  116 (202)
                      .+|+++||||+++||+++++.|++ +|++|++++|+......                 ......+..+.+|++|+++++
T Consensus        60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~~~~ag~~n~~a~~~~~~~~G~~a~~i~~Dvtd~~~v~  139 (422)
T 3s8m_A           60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASKAGTAGWYNSAAFDKHAKAAGLYSKSINGDAFSDAARA  139 (422)
T ss_dssp             SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTSHHHHH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhhhcccccchhHHHHHHHHhcCCcEEEEEecCCCHHHHH
Confidence            478999999999999999999999 99999999987654211                 112346788999999998776


Q ss_pred             HHh--------cCccEeEEccccC---------------CC-----------------------------CccchhhhHH
Q 028890          117 EAL--------DGVTAVISCVGGF---------------GS-----------------------------NSYMYKINGT  144 (202)
Q Consensus       117 ~~~--------~~~d~vi~~a~~~---------------~~-----------------------------~~~~~~~n~~  144 (202)
                      +++        -++|++|||||..               .+                             +...+++|..
T Consensus       140 ~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v~Vn~~  219 (422)
T 3s8m_A          140 QVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTITVMGG  219 (422)
T ss_dssp             HHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHHHhhch
Confidence            655        3589999999852               00                             0123344444


Q ss_pred             HHH-HHHHHHHHcC----CCEEEEEeccccCc--CCcCCcchHHHHHHHHHHHHHhc
Q 028890          145 ANI-NAIRAASEKG----VKRFVYISAADFGV--ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       145 ~~~-~~~~~~~~~~----~~~~v~~SS~~~~~--~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.+ .+++++....    -.++|++||.....  +......|++||.+.+.+.+..+
T Consensus       220 ~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~~p~~~~~aY~ASKaAl~~lTrsLA  276 (422)
T 3s8m_A          220 QDWELWIDALEGAGVLADGARSVAFSYIGTEITWPIYWHGALGKAKVDLDRTAQRLN  276 (422)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGGHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCCCEEEEEeCchhhccCCCccchHHHHHHHHHHHHHHHHH
Confidence            444 4555554322    25899999932211  11223689999999999988764

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=99.58  E-value=8.4e-15  Score=135.83  Aligned_cols=138  Identities=12%  Similarity=0.069  Sum_probs=102.0

Q ss_pred             CCCCeEEEEccCCh-hHHHHHHHHHHCCCeEEEEe-cCCCCccc---cc------CCCceeEEEccCCCHhhHHHHhc--
Q 028890           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLS-RSGRSSLR---DS------WANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~-iG~~l~~~Ll~~g~~V~~l~-r~~~~~~~---~~------~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      .++++++||||+|+ ||+++++.|+++|++|++++ |+......   ..      ...++.++.+|++|++++.++++  
T Consensus       474 L~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~lee~a~eL~ael~a~Ga~V~vV~~DVTD~esVeaLVe~I  553 (1688)
T 2pff_A          474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  553 (1688)
T ss_dssp             CCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTTTTTHHHHTTTTTCCTTCEEEEEECCSSSTTHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCCHHHHHHHHHHH
Confidence            45789999999998 99999999999999999984 54432111   01      13468899999999998887653  


Q ss_pred             -----------CccEeEEccccCCC-------------CccchhhhHHHHHHHHHHHHH--c----CCCEEEEEeccccC
Q 028890          121 -----------GVTAVISCVGGFGS-------------NSYMYKINGTANINAIRAASE--K----GVKRFVYISAADFG  170 (202)
Q Consensus       121 -----------~~d~vi~~a~~~~~-------------~~~~~~~n~~~~~~~~~~~~~--~----~~~~~v~~SS~~~~  170 (202)
                                 ++|++|||||....             +...+++|+.++..++++++.  .    +.++||++||...-
T Consensus       554 ~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M~krggGrIVnISSiAG~  633 (1688)
T 2pff_A          554 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT  633 (1688)
T ss_dssp             HSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTCTTSCEEECCCCCSCTTT
T ss_pred             HHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHHHhCCCCEEEEEEChHhc
Confidence                       48999999996422             134678999999998888732  1    22589999993211


Q ss_pred             cCCcCCcchHHHHHHHHHH-HHHh
Q 028890          171 VANYLLQGYYEGKVLSSDV-AACQ  193 (202)
Q Consensus       171 ~~~~~~~~Y~~sK~~~E~~-~~~~  193 (202)
                      .+  ....|+.||++.+.+ .+.+
T Consensus       634 ~G--g~saYaASKAAL~aLttrsL  655 (1688)
T 2pff_A          634 FG--GDGMYSESKLSLETLFNRWH  655 (1688)
T ss_dssp             SS--CBTTHHHHHHHHTHHHHHTT
T ss_pred             cC--CchHHHHHHHHHHHHHHHHH
Confidence            11  456899999999998 4433

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=99.57  E-value=2e-14  Score=136.60  Aligned_cols=138  Identities=12%  Similarity=0.083  Sum_probs=102.8

Q ss_pred             CCCCeEEEEccCCh-hHHHHHHHHHHCCCeEEEEe-cCCCCcc---c----c--cCCCceeEEEccCCCHhhHHHHhc--
Q 028890           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLS-RSGRSSL---R----D--SWANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~-iG~~l~~~Ll~~g~~V~~l~-r~~~~~~---~----~--~~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      .++++++||||+++ ||.++++.|+++|++|++++ |+.....   .    .  ....++.++.+|++|++++.++++  
T Consensus       673 l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~l~~~~~eL~~~~~~~g~~v~~v~~DVsd~~sV~alv~~i  752 (1887)
T 2uv8_A          673 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDYYQSIYAKYGAKGSTLIVVPFNQGSKQDVEALIEFI  752 (1887)
T ss_dssp             CTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHHHH
Confidence            46789999999998 99999999999999999985 5432210   0    0  113468899999999998887663  


Q ss_pred             -----------CccEeEEccccCCCC-------------ccchhhhHHHHHHHHHHHHHc------CCCEEEEEeccccC
Q 028890          121 -----------GVTAVISCVGGFGSN-------------SYMYKINGTANINAIRAASEK------GVKRFVYISAADFG  170 (202)
Q Consensus       121 -----------~~d~vi~~a~~~~~~-------------~~~~~~n~~~~~~~~~~~~~~------~~~~~v~~SS~~~~  170 (202)
                                 ++|++|||||.....             ...+++|+.++..+.++++..      +.++||++||....
T Consensus       753 ~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~~~~~G~IVnISS~ag~  832 (1887)
T 2uv8_A          753 YDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVILPMSPNHGT  832 (1887)
T ss_dssp             HSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCCSCCEEEEEEECSCTTC
T ss_pred             HHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhCCCCEEEEEcChHhc
Confidence                       489999999964321             346789999999998887432      12589999993211


Q ss_pred             cCCcCCcchHHHHHHHHHH-HHHh
Q 028890          171 VANYLLQGYYEGKVLSSDV-AACQ  193 (202)
Q Consensus       171 ~~~~~~~~Y~~sK~~~E~~-~~~~  193 (202)
                      .+  ....|+.||.+.+.+ .+.+
T Consensus       833 ~g--g~~aYaASKAAL~~Lttr~l  854 (1887)
T 2uv8_A          833 FG--GDGMYSESKLSLETLFNRWH  854 (1887)
T ss_dssp             SS--CBTTHHHHHHHGGGHHHHHH
T ss_pred             cC--CCchHHHHHHHHHHHHHHHH
Confidence            11  456899999999998 5543

>4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A*

Probab=99.57  E-value=2.2e-14  Score=119.93  Aligned_cols=141  Identities=10%  Similarity=-0.040  Sum_probs=98.5

Q ss_pred             CCCCeEEEEccCChhHHH--HHHHHHHCCCeEEEEecCCCCccc-----------------ccCCCceeEEEccCCCHhh
Q 028890           54 PPSEKLLVLGGNGFVGSH--ICREALDRGLTVASLSRSGRSSLR-----------------DSWANNVIWHQGNLLSSDS  114 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~--l~~~Ll~~g~~V~~l~r~~~~~~~-----------------~~~~~~~~~~~~D~~~~~~  114 (202)
                      ..+|+++||||+++||.+  +++.|.++|++|++++|+......                 ......+..+.+|++|+++
T Consensus        58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvtd~~~  137 (418)
T 4eue_A           58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDRRIGTAGWYNNIFFKEFAKKKGLVAKNFIEDAFSNET  137 (418)
T ss_dssp             CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSSCCCCHHHHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhhcccccccchHHHHHHHHHHcCCcEEEEEeeCCCHHH
Confidence            468899999999999999  999999999999999987543210                 1123468899999999998


Q ss_pred             HHHHhc-------CccEeEEccccC---------------CCC-----------------------------ccchhhhH
Q 028890          115 WKEALD-------GVTAVISCVGGF---------------GSN-----------------------------SYMYKING  143 (202)
Q Consensus       115 ~~~~~~-------~~d~vi~~a~~~---------------~~~-----------------------------~~~~~~n~  143 (202)
                      ++++++       ++|++|||||..               .+.                             ...+++|.
T Consensus       138 v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~~~vn~  217 (418)
T 4eue_A          138 KDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEETRKVMG  217 (418)
T ss_dssp             HHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHHHHHHhh
Confidence            877665       589999999863               000                             11233444


Q ss_pred             HHHH-HHHHHHHHcC----CCEEEEEeccccCcCCcC--CcchHHHHHHHHHHHHHhc
Q 028890          144 TANI-NAIRAASEKG----VKRFVYISAADFGVANYL--LQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       144 ~~~~-~~~~~~~~~~----~~~~v~~SS~~~~~~~~~--~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .+.+ .+++++...+    -.++|++||.....+.+.  ...|+.+|.+.+.+.+.++
T Consensus       218 ~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~~p~~~~~aY~ASKaAL~~ltrsLA  275 (418)
T 4eue_A          218 GEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRTYKIYREGTIGIAKKDLEDKAKLIN  275 (418)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGGTTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCCCCccccHHHHHHHHHHHHHHHHHH
Confidence            4343 4455544332    248999999422222223  3789999999999988754

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=99.57  E-value=1.3e-14  Score=137.50  Aligned_cols=138  Identities=12%  Similarity=0.048  Sum_probs=102.1

Q ss_pred             CCCCeEEEEccCCh-hHHHHHHHHHHCCCeEEEEecCCCCcc--------cc--cCCCceeEEEccCCCHhhHHHHhc--
Q 028890           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLSRSGRSSL--------RD--SWANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~-iG~~l~~~Ll~~g~~V~~l~r~~~~~~--------~~--~~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      .++++++||||+|+ ||.++++.|+++|++|++++++.....        ..  ....++.++.+|++|++++.++++  
T Consensus       650 L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~l~~~a~eL~~el~~~G~~v~~v~~DVsd~esV~alv~~i  729 (1878)
T 2uv9_A          650 FQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQVTEYYQGIYARCGARGSQLVVVPFNQGSKQDVEALVNYI  729 (1878)
T ss_dssp             CTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHHHHHHHHHHHHHhhccCCeEEEEEcCCCCHHHHHHHHHHH
Confidence            46789999999999 999999999999999999864432211        01  113468899999999998887663  


Q ss_pred             ---------CccEeEEccccCCC-------------CccchhhhHHHHHHHHHHHH--H----cCCCEEEEEeccccCcC
Q 028890          121 ---------GVTAVISCVGGFGS-------------NSYMYKINGTANINAIRAAS--E----KGVKRFVYISAADFGVA  172 (202)
Q Consensus       121 ---------~~d~vi~~a~~~~~-------------~~~~~~~n~~~~~~~~~~~~--~----~~~~~~v~~SS~~~~~~  172 (202)
                               ++|++|||||....             +...+++|+.++.+++++++  .    .+.++||++||...-.+
T Consensus       730 ~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~~~G~IVnISS~ag~~g  809 (1878)
T 2uv9_A          730 YDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETRPAQVILPLSPNHGTFG  809 (1878)
T ss_dssp             HCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSCCEEECCEECSCSSSSS
T ss_pred             HHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhCCCCEEEEEcchhhccC
Confidence                     48999999996432             13467899999998877642  1    12358999999311111


Q ss_pred             CcCCcchHHHHHHHHHHHHHh
Q 028890          173 NYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                        ....|+.+|.+.+.+.+.+
T Consensus       810 --g~~aYaASKAAL~aLt~~l  828 (1878)
T 2uv9_A          810 --NDGLYSESKLALETLFNRW  828 (1878)
T ss_dssp             --CCSSHHHHHHHHTTHHHHH
T ss_pred             --CchHHHHHHHHHHHHHHHH
Confidence              3568999999999987653

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=99.52  E-value=7.6e-14  Score=137.45  Aligned_cols=138  Identities=20%  Similarity=0.152  Sum_probs=104.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCe-EEEEecCCCCcc------c--ccCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLT-VASLSRSGRSSL------R--DSWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~-V~~l~r~~~~~~------~--~~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .+++++||||+|+||+++++.|+++|++ |++++|+..+..      .  .....++.++.+|++|+++++++++     
T Consensus      1883 ~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dvsd~~~v~~~~~~~~~~ 1962 (2512)
T 2vz8_A         1883 PHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRTGYQARQVREWRRQGVQVLVSTSNASSLDGARSLITEATQL 1962 (2512)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCSHHHHHHHHHHHHTTCEEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcchHHHHHHHHHHHhCCCEEEEEecCCCCHHHHHHHHHHHHhc
Confidence            5789999999999999999999999996 777888764421      0  1123468889999999998887664     


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                       .+|++|||||...          .+...+++|+.|++++.+++...  ..++||++||.....+......|+.+|.+.+
T Consensus      1963 g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g~iV~iSS~ag~~g~~g~~~Y~aaKaal~ 2042 (2512)
T 2vz8_A         1963 GPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELDYFVIFSSVSCGRGNAGQANYGFANSAME 2042 (2512)
T ss_dssp             SCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCCEEEEECCHHHHTTCTTCHHHHHHHHHHH
T ss_pred             CCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCCEEEEecchhhcCCCCCcHHHHHHHHHHH
Confidence             5899999999532          35678899999999998877653  2469999999322223345578999999999


Q ss_pred             HHHHH
Q 028890          188 DVAAC  192 (202)
Q Consensus       188 ~~~~~  192 (202)
                      .+.+.
T Consensus      2043 ~l~~~ 2047 (2512)
T 2vz8_A         2043 RICEK 2047 (2512)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99983

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=99.46  E-value=1.7e-13  Score=94.49  Aligned_cols=94  Identities=21%  Similarity=0.137  Sum_probs=76.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      .+++|+|+|+ |++|+++++.|+++| ++|++++|++.+.. .....++.++.+|+.+.+.+.++++++|+||++++.. 
T Consensus         4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-   80 (118)
T 3ic5_A            4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALA-VLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-   80 (118)
T ss_dssp             TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHH-HHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-
T ss_pred             CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHH-HHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-
Confidence            4679999999 999999999999999 89999999764421 1124578889999999999999999999999999642 


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEE
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFV  162 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v  162 (202)
                                 ...++++++.+.++++|.
T Consensus        81 -----------~~~~~~~~~~~~g~~~~~   98 (118)
T 3ic5_A           81 -----------LTPIIAKAAKAAGAHYFD   98 (118)
T ss_dssp             -----------GHHHHHHHHHHTTCEEEC
T ss_pred             -----------hhHHHHHHHHHhCCCEEE
Confidence                       134678888888875444

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=99.29  E-value=4e-11  Score=118.92  Aligned_cols=142  Identities=14%  Similarity=0.067  Sum_probs=99.6

Q ss_pred             CCCCeEEEEccCCh-hHHHHHHHHHHCCCeEEEEecCCCCc----cc------ccCCCceeEEEccCCCHhhHHHHhc--
Q 028890           54 PPSEKLLVLGGNGF-VGSHICREALDRGLTVASLSRSGRSS----LR------DSWANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~-iG~~l~~~Ll~~g~~V~~l~r~~~~~----~~------~~~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      .++|+++||||+++ ||+++++.|+++|++|++++|+....    ..      .....++..+.+|++|+++++++++  
T Consensus      2134 l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~~~~~~l~~~l~~~G~~~~~v~~Dvtd~~~v~~lv~~i 2213 (3089)
T 3zen_D         2134 XXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRLAFYKQLYRDHARFDATLWVVPANMASYSDIDKLVEWV 2213 (3089)
T ss_dssp             CCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHHHHHHHHHHHHCCTTCEEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhhHHHHHHHHHHhhcCCeEEEEEecCCCHHHHHHHHHHH
Confidence            57899999999999 99999999999999999999986541    00      1113457889999999998877642  


Q ss_pred             ---------CccEeEEccccC----C-----------CCccc----hhhhHHHHHHHHHHHHH----cCCC---EEEEEe
Q 028890          121 ---------GVTAVISCVGGF----G-----------SNSYM----YKINGTANINAIRAASE----KGVK---RFVYIS  165 (202)
Q Consensus       121 ---------~~d~vi~~a~~~----~-----------~~~~~----~~~n~~~~~~~~~~~~~----~~~~---~~v~~S  165 (202)
                               ++|++|||||..    .           ++...    +++|+.+++.+++++..    .+..   .++...
T Consensus      2214 ~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~~~~g~~~~ii~~~ 2293 (3089)
T 3zen_D         2214 GTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAERDIASRLHVVLPG 2293 (3089)
T ss_dssp             TSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCCEEEEEEE
T ss_pred             HhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEEEEEC
Confidence                     479999999961    0           12223    67788888877766543    3321   233333


Q ss_pred             ccccCcCCcCCcchHHHHHHHHHHHHHhccc
Q 028890          166 AADFGVANYLLQGYYEGKVLSSDVAACQSVL  196 (202)
Q Consensus       166 S~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~l  196 (202)
                      |...+. ......|+.||.+.+.+.+.++..
T Consensus      2294 ss~~g~-~g~~~aYsASKaAl~~LtrslA~E 2323 (3089)
T 3zen_D         2294 SPNRGM-FGGDGAYGEAKSALDALENRWSAE 2323 (3089)
T ss_dssp             CSSTTS-CSSCSSHHHHGGGHHHHHHHHHHC
T ss_pred             Cccccc-CCCchHHHHHHHHHHHHHHHHHhc
Confidence            322221 123357999999999999887543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=99.28  E-value=3.9e-11  Score=97.48  Aligned_cols=109  Identities=16%  Similarity=0.203  Sum_probs=81.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCc----ccccCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSS----LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      +++||+||||+|++|..++..|+.+|  ++|+++++++...    .... ..... +.. +.+.+++.++++++|+|||+
T Consensus         7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~-~~~~~-v~~-~~~t~d~~~al~gaDvVi~~   83 (326)
T 1smk_A            7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHM-DTGAV-VRG-FLGQQQLEAALTGMDLIIVP   83 (326)
T ss_dssp             -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTS-CSSCE-EEE-EESHHHHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcc-cccce-EEE-EeCCCCHHHHcCCCCEEEEc
Confidence            45799999999999999999999998  7999998765410    0010 01111 111 23355678889999999999


Q ss_pred             cccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          129 VGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       129 a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +|....    ....+..|+.++.++++++.+.+.+.+|+++|
T Consensus        84 ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S  125 (326)
T 1smk_A           84 AGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS  125 (326)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             CCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC
Confidence            996432    24567899999999999999998888888887

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=99.10  E-value=6.3e-11  Score=94.55  Aligned_cols=78  Identities=21%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---cc-CCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      .++++++||||+|++|+++++.|+++|++|++++|+..+...   .. ...++.++.+|+.|++++.++++++|+||||+
T Consensus       117 l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~DvlVn~a  196 (287)
T 1lu9_A          117 VKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG  196 (287)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHHHHHhCCEEEECC
Confidence            467899999999999999999999999999999997543111   00 00246778899999999999999999999999


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       197 g~  198 (287)
T 1lu9_A          197 AI  198 (287)
T ss_dssp             CT
T ss_pred             Cc
Confidence            74

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=99.08  E-value=8.6e-11  Score=95.58  Aligned_cols=111  Identities=6%  Similarity=-0.004  Sum_probs=80.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecC----CCCcc---cccCCCceeEEEccCCCHhhHHHHhc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRS----GRSSL---RDSWANNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~----~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      +++||+||||+|++|++++..|+.+|.       +|++++++    ..+..   .........+ ..|+...+++.++++
T Consensus         4 ~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-~~~i~~~~~~~~al~   82 (329)
T 1b8p_A            4 TPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-LAGMTAHADPMTAFK   82 (329)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-EEEEEEESSHHHHTT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-cCcEEEecCcHHHhC
Confidence            357999999999999999999999885       78888876    21110   0011111111 235555566788899


Q ss_pred             CccEeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 028890          121 GVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (202)
Q Consensus       121 ~~d~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~-~~-~~v~~SS  166 (202)
                      ++|+|||+||....+    ...+..|+.++.++++++.+.+ .+ +||++|.
T Consensus        83 ~aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           83 DADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             TCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            999999999964422    3466789999999999999984 66 8888887

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=99.06  E-value=1.1e-09  Score=77.69  Aligned_cols=100  Identities=13%  Similarity=0.083  Sum_probs=73.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccccCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFG  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~~~  133 (202)
                      ++++|+|+|+ |.+|+.+++.|.+.|++|++++|++.... ........++.+|..+++.+.++ +.++|+||++++.. 
T Consensus         5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~-~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~-   81 (144)
T 2hmt_A            5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVN-AYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN-   81 (144)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHH-TTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC-
T ss_pred             cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc-
Confidence            4678999998 99999999999999999999998754321 11123456788999998888775 67899999998751 


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                           .+.|.    .+.+.+++.++++++..++
T Consensus        82 -----~~~~~----~~~~~~~~~~~~~ii~~~~  105 (144)
T 2hmt_A           82 -----IQAST----LTTLLLKELDIPNIWVKAQ  105 (144)
T ss_dssp             -----HHHHH----HHHHHHHHTTCSEEEEECC
T ss_pred             -----hHHHH----HHHHHHHHcCCCeEEEEeC
Confidence                 12222    3456677778777776665

>4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A

Probab=99.02  E-value=3.4e-09  Score=87.11  Aligned_cols=79  Identities=14%  Similarity=0.100  Sum_probs=62.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHH-HCCCeEEEEecCCCCccc-----------------ccCCCceeEEEccCCCHhhH
Q 028890           54 PPSEKLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSSLR-----------------DSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll-~~g~~V~~l~r~~~~~~~-----------------~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ..+|++|||||++++|.+.+..|. ..|.+++++.+.......                 .........+.||+++++.+
T Consensus        48 ~~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~d~e~i  127 (401)
T 4ggo_A           48 KAPKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSETKYGTPGWYNNLAFDEAAKREGLYSVTIDGDAFSDEIK  127 (401)
T ss_dssp             CCCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSSCCCHHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHH
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCcccccccccccchhHHHHHHHHHHcCCCceeEeCCCCCHHHH
Confidence            357899999999999999999998 679999988876543211                 11245778999999999988


Q ss_pred             HHHhc-------CccEeEEccccC
Q 028890          116 KEALD-------GVTAVISCVGGF  132 (202)
Q Consensus       116 ~~~~~-------~~d~vi~~a~~~  132 (202)
                      +++++       ++|++||+++..
T Consensus       128 ~~vi~~i~~~~G~IDiLVhS~A~~  151 (401)
T 4ggo_A          128 AQVIEEAKKKGIKFDLIVYSLASP  151 (401)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCCS
T ss_pred             HHHHHHHHHhcCCCCEEEEecccc
Confidence            87776       589999999853

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=98.98  E-value=1.4e-09  Score=87.91  Aligned_cols=105  Identities=17%  Similarity=0.125  Sum_probs=75.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEec--CCCCc------ccc--cCC-CceeEEEccCCCHhhHHHHhcCcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSR--SGRSS------LRD--SWA-NNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r--~~~~~------~~~--~~~-~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      |||+||||+|++|++++..|+.+|.  ++.++++  +..+.      ...  ... ..+++...    .+++.++++++|
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~~i~~~----~d~l~~al~gaD   76 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVE----SDENLRIIDESD   76 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEE----ETTCGGGGTTCS
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHHHHHhHHhcCCCeEEEeC----CcchHHHhCCCC
Confidence            4899999999999999999999885  6777777  32211      000  011 12222221    123566789999


Q ss_pred             EeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +|||+||....+    ...+..|+.++.++++++++.+ +++++++|
T Consensus        77 ~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~S  122 (313)
T 1hye_A           77 VVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVIT  122 (313)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECS
T ss_pred             EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEec
Confidence            999999964322    3567899999999999999998 88888887

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=98.98  E-value=2.9e-09  Score=90.02  Aligned_cols=102  Identities=19%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc-CCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      +++|+|+| +|++|+++++.|++.|++|++++|+..+..... ...++..+.+|+.|.+++.++++++|+||||++....
T Consensus         3 ~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            3 TKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CH
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccc
Confidence            57899998 699999999999999999999999754321111 1124778899999999999999999999999986321


Q ss_pred             C---ccchh--hh-------HHHHHHHHHHHHHcCC
Q 028890          135 N---SYMYK--IN-------GTANINAIRAASEKGV  158 (202)
Q Consensus       135 ~---~~~~~--~n-------~~~~~~~~~~~~~~~~  158 (202)
                      .   ...++  .+       .....++++++++.|+
T Consensus        82 ~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv  117 (450)
T 1ff9_A           82 ATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGI  117 (450)
T ss_dssp             HHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTC
T ss_pred             hHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCC
Confidence            1   00111  11       2356788999999886

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.95  E-value=3e-10  Score=91.39  Aligned_cols=103  Identities=16%  Similarity=0.122  Sum_probs=74.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEec--CCCCccc------c--cCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSR--SGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r--~~~~~~~------~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      +||+||||+|++|..++..|+.+|.  ++.++++  +..+...      .  ....++.+.. +  +    .++++++|+
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv   73 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQ-G--G----YEDTAGSDV   73 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEE-C--C----GGGGTTCSE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEe-C--C----HHHhCCCCE
Confidence            5899999999999999999999886  6777777  4321000      0  0112223322 1  1    345789999


Q ss_pred             eEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       125 vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |||+||....+    ...+..|+.++.++++++++.+.+.+|+++|
T Consensus        74 Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S  119 (303)
T 1o6z_A           74 VVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (303)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC
Confidence            99999965422    3567899999999999999998888888887

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.93  E-value=5.9e-09  Score=73.52  Aligned_cols=99  Identities=13%  Similarity=0.214  Sum_probs=70.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccccCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFGS  134 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~~~~  134 (202)
                      +|+|+|+|+ |.+|..+++.|.+.|++|++++|++..........++.++.+|..+++.+.+. ++++|+||++.+..  
T Consensus         4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~--   80 (140)
T 1lss_A            4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE--   80 (140)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH--
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCc--
Confidence            478999997 99999999999999999999998754321111112567788999888877655 67899999997531  


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                           ..|    ..+.+.++..+.+++|..++
T Consensus        81 -----~~~----~~~~~~~~~~~~~~ii~~~~  103 (140)
T 1lss_A           81 -----EVN----LMSSLLAKSYGINKTIARIS  103 (140)
T ss_dssp             -----HHH----HHHHHHHHHTTCCCEEEECS
T ss_pred             -----hHH----HHHHHHHHHcCCCEEEEEec
Confidence                 122    23455666677777776554

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.91  E-value=6.2e-09  Score=73.96  Aligned_cols=99  Identities=15%  Similarity=0.107  Sum_probs=71.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccccCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFG  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~~~  133 (202)
                      ++++++|+|+ |.+|+++++.|.++|++|+++++++.... .....++.++.+|.++++.+.++ ++++|+||.+.+.  
T Consensus         5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~~~~-~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~--   80 (141)
T 3llv_A            5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKEKIE-LLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD--   80 (141)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC--
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHHHHH-HHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC--
Confidence            4678999998 99999999999999999999999764321 11124678899999999988876 4579999988762  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                           ...|.    .+...+++.+..+++-...
T Consensus        81 -----~~~n~----~~~~~a~~~~~~~iia~~~  104 (141)
T 3llv_A           81 -----DEFNL----KILKALRSVSDVYAIVRVS  104 (141)
T ss_dssp             -----HHHHH----HHHHHHHHHCCCCEEEEES
T ss_pred             -----HHHHH----HHHHHHHHhCCceEEEEEc
Confidence                 12232    3445566666445554443

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.88  E-value=5.3e-09  Score=87.30  Aligned_cols=91  Identities=14%  Similarity=0.138  Sum_probs=70.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC---CeEEEEecCCCCccc--c----cCCCceeEEEccCCCHhhHHHHhcC--ccE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSLR--D----SWANNVIWHQGNLLSSDSWKEALDG--VTA  124 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l~r~~~~~~~--~----~~~~~~~~~~~D~~~~~~~~~~~~~--~d~  124 (202)
                      |++|+|+|| |++|+.+++.|++.|   .+|++.+|+..+...  .    ....++..+.+|+.|.+++.+++++  +|+
T Consensus         1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~Dv   79 (405)
T 4ina_A            1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQI   79 (405)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCE
Confidence            468999999 999999999999998   389999998654211  0    0113688999999999999999987  899


Q ss_pred             eEEccccCCCCccchhhhHHHHHHHHHHHHHcCCC
Q 028890          125 VISCVGGFGSNSYMYKINGTANINAIRAASEKGVK  159 (202)
Q Consensus       125 vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~  159 (202)
                      ||||+++..            ...++++|.+.++.
T Consensus        80 Vin~ag~~~------------~~~v~~a~l~~g~~  102 (405)
T 4ina_A           80 VLNIALPYQ------------DLTIMEACLRTGVP  102 (405)
T ss_dssp             EEECSCGGG------------HHHHHHHHHHHTCC
T ss_pred             EEECCCccc------------ChHHHHHHHHhCCC
Confidence            999998631            13557777777753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.81  E-value=1.1e-07  Score=68.59  Aligned_cols=100  Identities=16%  Similarity=0.112  Sum_probs=72.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC-CCceeEEEccCCCHhhHHHH-hcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW-ANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~-~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~  131 (202)
                      ..+++|+|+|+ |.+|..+++.|.+.|++|++++|++.... ... ..+..++.+|..+++.+.++ +.++|+||.+.+.
T Consensus        17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~~~-~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~   94 (155)
T 2g1u_A           17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYAFH-RLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTND   94 (155)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGGG-GSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSC
T ss_pred             cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHH-HHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCC
Confidence            35679999997 99999999999999999999999865432 222 34567788999888877765 6789999999864


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHH-cCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASE-KGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~-~~~~~~v~~SS  166 (202)
                      .       ..    ...+.+.++. .+..+++...+
T Consensus        95 ~-------~~----~~~~~~~~~~~~~~~~iv~~~~  119 (155)
T 2g1u_A           95 D-------ST----NFFISMNARYMFNVENVIARVY  119 (155)
T ss_dssp             H-------HH----HHHHHHHHHHTSCCSEEEEECS
T ss_pred             c-------HH----HHHHHHHHHHHCCCCeEEEEEC
Confidence            1       11    1234455665 55556666655

>2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae}

Probab=98.81  E-value=2.3e-08  Score=76.93  Aligned_cols=74  Identities=18%  Similarity=0.239  Sum_probs=54.0

Q ss_pred             CCCeEEEEcc----------------CChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhh----
Q 028890           55 PSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS----  114 (202)
Q Consensus        55 ~~~~vlVtGa----------------~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~----  114 (202)
                      .+++|+||||                +|++|.++++.|+++|++|+++.|......  ....++.++  |+...++    
T Consensus         2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~~--~~~~~~~~~--~v~s~~em~~~   77 (232)
T 2gk4_A            2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALKP--EPHPNLSIR--EITNTKDLLIE   77 (232)
T ss_dssp             -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCCC--CCCTTEEEE--ECCSHHHHHHH
T ss_pred             CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCccccc--cCCCCeEEE--EHhHHHHHHHH
Confidence            4789999999                999999999999999999999998753211  112355554  4445443    


Q ss_pred             HHHHhcCccEeEEccccC
Q 028890          115 WKEALDGVTAVISCVGGF  132 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~  132 (202)
                      +.+.+.++|++||||+..
T Consensus        78 v~~~~~~~Dili~aAAvs   95 (232)
T 2gk4_A           78 MQERVQDYQVLIHSMAVS   95 (232)
T ss_dssp             HHHHGGGCSEEEECSBCC
T ss_pred             HHHhcCCCCEEEEcCccc
Confidence            334455799999999953

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.79  E-value=1.6e-08  Score=83.17  Aligned_cols=95  Identities=22%  Similarity=0.234  Sum_probs=71.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      .++|||+|.|| |++|+.+++.|.+ .++|.+.+|+..+..  .....+..+.+|+.|.+++.++++++|+||+++++. 
T Consensus        14 g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~--~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~-   88 (365)
T 3abi_A           14 GRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLE--KVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF-   88 (365)
T ss_dssp             --CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHH--HHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG-
T ss_pred             CCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHH--HHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc-
Confidence            45678999998 9999999988854 689998888754321  123567788999999999999999999999999763 


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEe
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~S  165 (202)
                           +      ...++++|.++|+ +++=+|
T Consensus        89 -----~------~~~v~~~~~~~g~-~yvD~s  108 (365)
T 3abi_A           89 -----L------GFKSIKAAIKSKV-DMVDVS  108 (365)
T ss_dssp             -----G------HHHHHHHHHHHTC-EEEECC
T ss_pred             -----c------cchHHHHHHhcCc-ceEeee
Confidence                 1      1256777777774 655444

>1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A*

Probab=98.78  E-value=4.9e-08  Score=74.89  Aligned_cols=73  Identities=18%  Similarity=0.224  Sum_probs=55.4

Q ss_pred             CCCCeEEEEcc----------------CChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHH
Q 028890           54 PPSEKLLVLGG----------------NGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE  117 (202)
Q Consensus        54 ~~~~~vlVtGa----------------~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~  117 (202)
                      ..+++|+||||                +|++|.++++.|+++|++|+++.+.....  .  ..++.  .+|+.+.+++.+
T Consensus         6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l~--~--~~g~~--~~dv~~~~~~~~   79 (226)
T 1u7z_A            6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP--T--PPFVK--RVDVMTALEMEA   79 (226)
T ss_dssp             TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC--C--CTTEE--EEECCSHHHHHH
T ss_pred             CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCcccc--c--CCCCe--EEccCcHHHHHH
Confidence            46899999999                69999999999999999999988765211  1  12333  468877665544


Q ss_pred             H----hcCccEeEEccccC
Q 028890          118 A----LDGVTAVISCVGGF  132 (202)
Q Consensus       118 ~----~~~~d~vi~~a~~~  132 (202)
                      .    +.++|++|||||..
T Consensus        80 ~v~~~~~~~Dili~~Aav~   98 (226)
T 1u7z_A           80 AVNASVQQQNIFIGCAAVA   98 (226)
T ss_dssp             HHHHHGGGCSEEEECCBCC
T ss_pred             HHHHhcCCCCEEEECCccc
Confidence            3    44699999999964

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=98.73  E-value=2.9e-08  Score=71.56  Aligned_cols=75  Identities=19%  Similarity=0.254  Sum_probs=61.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC---cccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS---SLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~---~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~  131 (202)
                      .++++|+|+ |.+|+.+++.|.+.|++|+++++++..   ........++.++.+|..+++.+.++ ++++|+||.+.+.
T Consensus         3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            468999997 999999999999999999999997421   11112235689999999999999887 8899999988754

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.72  E-value=8.5e-08  Score=77.36  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=74.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCc----ccccC-CCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSS----LRDSW-ANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~----~~~~~-~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      |||.|+||+|++|..++..|+..|  .+|.++++++...    ..... ..++....    ..++++++++++|+||+++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~----~t~d~~~a~~~aDvVvi~a   76 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYL----GPEQLPDCLKGCDVVVIPA   76 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEE----SGGGHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEec----CCCCHHHHhCCCCEEEECC
Confidence            589999999999999999999888  6899999876210    00100 11122211    1235677889999999999


Q ss_pred             ccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          130 GGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       130 ~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      |....    ....+..|......+++.+.+...+ +++++|-
T Consensus        77 g~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN  118 (314)
T 1mld_A           77 GVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN  118 (314)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred             CcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence            86432    2456678889999999998887655 6666543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.69  E-value=1.2e-08  Score=86.68  Aligned_cols=104  Identities=13%  Similarity=0.077  Sum_probs=74.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .++++|+|+|+ |++|+++++.|++. |++|++++|+..+........++..+.+|+.|.+++.++++++|+||||++..
T Consensus        21 l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~   99 (467)
T 2axq_A           21 HMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYT   99 (467)
T ss_dssp             --CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGG
T ss_pred             CCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchh
Confidence            45789999998 99999999999998 78999999986442111111356778899999999999999999999999864


Q ss_pred             CCC----------ccchhhhH--HHHHHHHHHHHHcCC
Q 028890          133 GSN----------SYMYKING--TANINAIRAASEKGV  158 (202)
Q Consensus       133 ~~~----------~~~~~~n~--~~~~~~~~~~~~~~~  158 (202)
                      ...          ...++++.  .....+++.+++.|+
T Consensus       100 ~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv  137 (467)
T 2axq_A          100 FHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI  137 (467)
T ss_dssp             GHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence            211          11122221  234577788888775

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=98.60  E-value=2.1e-08  Score=81.46  Aligned_cols=107  Identities=13%  Similarity=0.087  Sum_probs=75.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC--e-----EEEEecCCCC--------cccccCCCceeEEEccCCCHhhHHHHhc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL--T-----VASLSRSGRS--------SLRDSWANNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~--~-----V~~l~r~~~~--------~~~~~~~~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      .++|+||||+|+||++++..|+..|.  +     ++++++.+..        +..+...+-.    .++...+...+.++
T Consensus         3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~~----~~~~~~~~~~~~~~   78 (333)
T 5mdh_A            3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLL----KDVIATDKEEIAFK   78 (333)
T ss_dssp             CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTE----EEEEEESCHHHHTT
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccccchhhHhhhHhhhhccc----CCEEEcCCcHHHhC
Confidence            46999999999999999999998875  5     8888886421        0111000111    12222234567789


Q ss_pred             CccEeEEccccCC----CCccchhhhHHHHHHHHHHHHHcCCC--EEEEEec
Q 028890          121 GVTAVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVK--RFVYISA  166 (202)
Q Consensus       121 ~~d~vi~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~--~~v~~SS  166 (202)
                      ++|+||++||...    .....++.|......+++++.+.+.+  +++.+|.
T Consensus        79 daDvVvitAg~prkpG~tR~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN  130 (333)
T 5mdh_A           79 DLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN  130 (333)
T ss_dssp             TCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence            9999999998643    34567889999999999999998865  5776665

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.57  E-value=2.1e-07  Score=70.89  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=60.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~  131 (202)
                      |+|+|+|+ |.+|+++++.|.++|++|+++++++..........+..++.+|.++++.+.++ ++++|+||.+.+.
T Consensus         1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   75 (218)
T 3l4b_C            1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPR   75 (218)
T ss_dssp             CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSC
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCC
Confidence            57999997 99999999999999999999998765422111123678999999999999886 7789999987753

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.48  E-value=3.9e-07  Score=67.45  Aligned_cols=75  Identities=17%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH--hcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA--LDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~--~~~~d~vi~~a~~  131 (202)
                      .+++|+|+|+ |.+|..+++.|.+. |++|+++++++..... ....++.++.+|..+++.+.++  ++++|+||.+.+.
T Consensus        38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~-~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~  115 (183)
T 3c85_A           38 GHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEAAQQ-HRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPH  115 (183)
T ss_dssp             TTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHHHHH-HHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHHHHH-HHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCC
Confidence            4678999996 99999999999999 9999999998644211 1124677889999999888877  7889999988753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.44  E-value=4.1e-07  Score=64.52  Aligned_cols=75  Identities=19%  Similarity=0.175  Sum_probs=60.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~  131 (202)
                      ..++++|.|+ |.+|..+++.|.+.|++|+++++++.... .....++.++.+|.++++.+.++ +.++|+||.+.+.
T Consensus         6 ~~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~~~~-~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (140)
T 3fwz_A            6 ICNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRTRVD-ELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPN   81 (140)
T ss_dssp             CCSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHHHHH-HHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSC
T ss_pred             CCCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCC
Confidence            3568999998 99999999999999999999999865421 11225778999999999988765 5678999988754

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=98.38  E-value=2.6e-07  Score=69.15  Aligned_cols=96  Identities=23%  Similarity=0.232  Sum_probs=62.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH---HHhc--CccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EALD--GVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~~--~~d~vi~~a  129 (202)
                      .+++|+|+||+|++|.++++.+...|++|++++|++.+.... ...+... ..|..+.+..+   +...  ++|++|+|+
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~~  115 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREML-SRLGVEY-VGDSRSVDFADEILELTDGYGVDVVLNSL  115 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHH-HTTCCSE-EEETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCCE-EeeCCcHHHHHHHHHHhCCCCCeEEEECC
Confidence            568999999999999999999999999999999875432111 1112222 24666654333   3332  599999999


Q ss_pred             ccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       130 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |..            .....++.++..  ++++.+++
T Consensus       116 g~~------------~~~~~~~~l~~~--G~~v~~g~  138 (198)
T 1pqw_A          116 AGE------------AIQRGVQILAPG--GRFIELGK  138 (198)
T ss_dssp             CTH------------HHHHHHHTEEEE--EEEEECSC
T ss_pred             chH------------HHHHHHHHhccC--CEEEEEcC
Confidence            731            112334444333  48998887

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=98.38  E-value=8.4e-07  Score=68.25  Aligned_cols=95  Identities=13%  Similarity=0.046  Sum_probs=68.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccccCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFG  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~~~  133 (202)
                      ..++++|.|+ |.+|+.+++.|.+.|+ |+++++++..... .. .++.++.+|.+|++.+.++ ++++|.||.+.+.. 
T Consensus         8 ~~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~~~~~-~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d-   82 (234)
T 2aef_A            8 KSRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKKV-LR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESD-   82 (234)
T ss_dssp             --CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGGHHHH-HH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCH-
T ss_pred             CCCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHHHHHH-Hh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCc-
Confidence            3568999998 9999999999999999 9999887654221 12 5688999999999999877 78999999886531 


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCC-EEEEE
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVK-RFVYI  164 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~  164 (202)
                            ..|.    .+...+++.+.+ ++|--
T Consensus        83 ------~~n~----~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           83 ------SETI----HCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             ------HHHH----HHHHHHHHHCSSSEEEEE
T ss_pred             ------HHHH----HHHHHHHHHCCCCeEEEE
Confidence                  2222    334456666654 55443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.21  E-value=7.7e-07  Score=73.30  Aligned_cols=77  Identities=18%  Similarity=0.125  Sum_probs=57.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..+++|+|+|+ |.+|..+++.|...|++|++++|++.+........+.. +.+|..+.+++.+++.++|+||+|++..
T Consensus       164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~-~~~~~~~~~~l~~~~~~~DvVi~~~g~~  240 (369)
T 2eez_A          164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGR-VITLTATEANIKKSVQHADLLIGAVLVP  240 (369)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTS-EEEEECCHHHHHHHHHHCSEEEECCC--
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCce-EEEecCCHHHHHHHHhCCCEEEECCCCC
Confidence            45689999999 99999999999999999999999764321110001112 4567778888999899999999999853

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=98.16  E-value=2.8e-06  Score=69.15  Aligned_cols=76  Identities=14%  Similarity=0.027  Sum_probs=53.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-----CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d~vi~~  128 (202)
                      ..+++|+|+|++|++|..+++.+...|++|++++|++.+..... ..+.. ...|+.+.+++.+.+.     ++|++|++
T Consensus       168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~-~~g~~-~~~d~~~~~~~~~~~~~~~~~~~D~vi~~  245 (347)
T 2hcy_A          168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFR-SIGGE-VFIDFTKEKDIVGAVLKATDGGAHGVINV  245 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHH-HTTCC-EEEETTTCSCHHHHHHHHHTSCEEEEEEC
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHH-HcCCc-eEEecCccHhHHHHHHHHhCCCCCEEEEC
Confidence            35689999999999999999999999999999998765421111 11222 2237764433433332     69999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       246 ~g~  248 (347)
T 2hcy_A          246 SVS  248 (347)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            984

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=98.12  E-value=2.2e-06  Score=69.35  Aligned_cols=76  Identities=25%  Similarity=0.180  Sum_probs=52.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHH----Hhc-CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE----ALD-GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~----~~~-~~d~vi~~  128 (202)
                      ..+++++|+||+|+||..+++.+...|++|++++|++.+.... ..-+.. ..+|+.+.+++.+    ... ++|++|+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~-~~~d~~~~~~~~~~~~~~~~~~~d~vi~~  221 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFD-AAFNYKTVNSLEEALKKASPDGYDCYFDN  221 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCS-EEEETTSCSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCc-EEEecCCHHHHHHHHHHHhCCCCeEEEEC
Confidence            3578999999999999999999999999999999875431111 111222 2347766233332    222 59999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       222 ~g~  224 (333)
T 1v3u_A          222 VGG  224 (333)
T ss_dssp             SCH
T ss_pred             CCh
Confidence            984

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=98.12  E-value=2.4e-05  Score=65.31  Aligned_cols=97  Identities=13%  Similarity=0.127  Sum_probs=71.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccccCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFG  133 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~~~  133 (202)
                      .+++|+|+|. |.+|+.+++.|.+.|++|+++++++.... .....++.++.+|.++++.+.++ ++++|+||.+.+.  
T Consensus         3 ~~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~~v~-~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~--   78 (413)
T 3l9w_A            3 HGMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPDHIE-TLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDD--   78 (413)
T ss_dssp             -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHHHHH-HHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSS--
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHH-HHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCC--
Confidence            3468999997 99999999999999999999999865421 11234678999999999999887 7789999888753  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCC-EEEEE
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVK-RFVYI  164 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~  164 (202)
                               -.....++..+++.+.+ ++|--
T Consensus        79 ---------~~~n~~i~~~ar~~~p~~~Iiar  101 (413)
T 3l9w_A           79 ---------PQTNLQLTEMVKEHFPHLQIIAR  101 (413)
T ss_dssp             ---------HHHHHHHHHHHHHHCTTCEEEEE
T ss_pred             ---------hHHHHHHHHHHHHhCCCCeEEEE
Confidence                     12233445566666654 44433

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.09  E-value=2.3e-06  Score=69.74  Aligned_cols=104  Identities=18%  Similarity=0.196  Sum_probs=71.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcc------cc-cCC-CceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL------RD-SWA-NNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~------~~-~~~-~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      .++||.|+|++|++|..++..++..|  .+|++++.+.++..      .. ... .++.+       ..++.++++++|+
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~-------t~d~~~al~dADv   79 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTF-------TSDIKEALTDAKY   79 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEE-------ESCHHHHHTTEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEE-------cCCHHHHhCCCCE
Confidence            56799999999999999999999998  48999998653211      01 011 11211       1345677889999


Q ss_pred             eEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCE--EEEEe
Q 028890          125 VISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKR--FVYIS  165 (202)
Q Consensus       125 vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~--~v~~S  165 (202)
                      ||.+||....    ..+.+..|......+++.+.+...+-  ++.+|
T Consensus        80 VvitaG~p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs  126 (343)
T 3fi9_A           80 IVSSGGAPRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF  126 (343)
T ss_dssp             EEECCC-------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred             EEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec
Confidence            9999996432    23456788888888899998877654  44554

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.98  E-value=3e-06  Score=68.35  Aligned_cols=75  Identities=21%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH---HHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~~--~~d~vi~~  128 (202)
                      ..+++|+|+||+|++|..+++.+...|++|++++|++.+..... ..+... ..|..+.+..+   +...  ++|++|+|
T Consensus       139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~D~vi~~  216 (327)
T 1qor_A          139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQ-VINYREEDLVERLKEITGGKKVRVVYDS  216 (327)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HcCCCE-EEECCCccHHHHHHHHhCCCCceEEEEC
Confidence            35789999999999999999999999999999998754311100 011221 24665544333   3332  59999999


Q ss_pred             cc
Q 028890          129 VG  130 (202)
Q Consensus       129 a~  130 (202)
                      +|
T Consensus       217 ~g  218 (327)
T 1qor_A          217 VG  218 (327)
T ss_dssp             SC
T ss_pred             Cc
Confidence            98

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.98  E-value=4.5e-07  Score=68.60  Aligned_cols=73  Identities=12%  Similarity=0.132  Sum_probs=48.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEE-ccCCCHhhHHHHhcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQ-GNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~-~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |+|+|+||+|.+|+++++.|++.|++|++++|++..........+. .+. .|+. .+++.++++++|+||++...
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~D~Vi~~~~~   74 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRR-IAGDASIT-GMKNEDAAEACDIAVLTIPW   74 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHH-HHSSCCEE-EEEHHHHHHHCSEEEECSCH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcc-ccccCCCC-hhhHHHHHhcCCEEEEeCCh
Confidence            4799999899999999999999999999999875432110000000 000 1221 23455667789999999864

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=97.97  E-value=5e-06  Score=67.84  Aligned_cols=74  Identities=19%  Similarity=0.185  Sum_probs=50.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhh---HHHHhc-CccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEALD-GVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~-~~d~vi~~a~~  131 (202)
                      ++|+|+||+|+||..+++.+...|+ +|+++++++.+.......-+.. ..+|..+.+.   +.+... ++|++|+|+|.
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~-~~~d~~~~~~~~~~~~~~~~~~d~vi~~~G~  240 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFD-AAINYKKDNVAEQLRESCPAGVDVYFDNVGG  240 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCS-EEEETTTSCHHHHHHHHCTTCEEEEEESCCH
T ss_pred             cEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCc-eEEecCchHHHHHHHHhcCCCCCEEEECCCH
Confidence            8999999999999999999999999 9999998754311110001222 2246655432   333322 59999999983

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=97.97  E-value=7.5e-06  Score=66.80  Aligned_cols=76  Identities=21%  Similarity=0.226  Sum_probs=52.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhh---HHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~--~~d~vi~~  128 (202)
                      ..+++|+|+||+|++|..+++.+...|++|++++|++.+.... ...+... ..|..+.+.   +.+...  ++|++|+|
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~ga~~-~~d~~~~~~~~~~~~~~~~~~~D~vi~~  246 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV-LQNGAHE-VFNHREVNYIDKIKKYVGEKGIDIIIEM  246 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSE-EEETTSTTHHHHHHHHHCTTCEEEEEES
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH-HHcCCCE-EEeCCCchHHHHHHHHcCCCCcEEEEEC
Confidence            3568999999999999999999999999999999875432111 1112221 246655443   333333  69999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       247 ~G~  249 (351)
T 1yb5_A          247 LAN  249 (351)
T ss_dssp             CHH
T ss_pred             CCh
Confidence            984

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=97.96  E-value=4.2e-06  Score=67.65  Aligned_cols=76  Identities=20%  Similarity=0.198  Sum_probs=52.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhh---HHHHh--cCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEAL--DGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~--~~~d~vi~~  128 (202)
                      ..+++|+|+||+|++|..+++.+...|++|++++|++.+..... .-+... ..|..+.+.   +.+..  .++|++|+|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~g~~~-~~d~~~~~~~~~i~~~~~~~~~d~vi~~  221 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETAR-KLGCHH-TINYSTQDFAEVVREITGGKGVDVVYDS  221 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSE-EEETTTSCHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCE-EEECCCHHHHHHHHHHhCCCCCeEEEEC
Confidence            35689999999999999999999999999999998753311100 011221 236655433   33333  269999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       222 ~g~  224 (333)
T 1wly_A          222 IGK  224 (333)
T ss_dssp             SCT
T ss_pred             CcH
Confidence            985

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=97.95  E-value=4.4e-06  Score=67.80  Aligned_cols=77  Identities=19%  Similarity=0.114  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh----hHHHHh-cCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD----SWKEAL-DGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~----~~~~~~-~~~d~vi~~  128 (202)
                      ..+++|+|+||+|++|..+++.+...|++|++++|++.+.......-+... ..|+.+.+    .+.+.. .++|++|+|
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~  232 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDD-AFNYKEESDLTAALKRCFPNGIDIYFEN  232 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSE-EEETTSCSCSHHHHHHHCTTCEEEEEES
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCce-EEecCCHHHHHHHHHHHhCCCCcEEEEC
Confidence            356899999999999999999999999999999987543211110112222 23665432    233322 269999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       233 ~g~  235 (345)
T 2j3h_A          233 VGG  235 (345)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            974

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.94  E-value=6.1e-06  Score=65.15  Aligned_cols=36  Identities=22%  Similarity=0.494  Sum_probs=28.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEEE-ecCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSG   90 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l-~r~~   90 (202)
                      ++++|+|+|++|.+|+.+++.+.+. |++++++ ++++
T Consensus         4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~   41 (273)
T 1dih_A            4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREG   41 (273)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTT
T ss_pred             CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCc
Confidence            3479999999999999999998865 7788754 4443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=97.93  E-value=9.1e-06  Score=66.42  Aligned_cols=91  Identities=18%  Similarity=0.207  Sum_probs=58.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC-----C-eEEEEecCCC--Cccccc---CC--CceeEEEccCCCHhhHHHHhcC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG-----L-TVASLSRSGR--SSLRDS---WA--NNVIWHQGNLLSSDSWKEALDG  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g-----~-~V~~l~r~~~--~~~~~~---~~--~~~~~~~~D~~~~~~~~~~~~~  121 (202)
                      ++++|+|.||||.+|+.+++.|++++     + +++.+.++..  +.....   ..  ..+.+.  |+ +++    .+.+
T Consensus         8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~--~~-~~~----~~~~   80 (352)
T 2nqt_A            8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVE--PT-EAA----VLGG   80 (352)
T ss_dssp             SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCE--EC-CHH----HHTT
T ss_pred             cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeec--cC-CHH----HhcC
Confidence            35799999999999999999999988     4 7777764322  211110   00  112221  22 222    2458


Q ss_pred             ccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          122 VTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       122 ~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +|+||.|.|...            ...+++.+ +.|+ ++|-+|+
T Consensus        81 ~DvVf~alg~~~------------s~~~~~~~-~~G~-~vIDlSa  111 (352)
T 2nqt_A           81 HDAVFLALPHGH------------SAVLAQQL-SPET-LIIDCGA  111 (352)
T ss_dssp             CSEEEECCTTSC------------CHHHHHHS-CTTS-EEEECSS
T ss_pred             CCEEEECCCCcc------------hHHHHHHH-hCCC-EEEEECC
Confidence            999999998632            22456666 6674 7888887

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.92  E-value=1.4e-05  Score=64.36  Aligned_cols=77  Identities=12%  Similarity=0.225  Sum_probs=57.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCC---Cccc--ccC--CCceeEEEccCCCHhhHHHHhcCccE
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR---SSLR--DSW--ANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~---~~~~--~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ..++++++|+|+ |++|++++..|.+.|. +|++++|+..   +...  ...  ...+.+...++.+.+++.+.+.++|+
T Consensus       151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDi  229 (315)
T 3tnl_A          151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVI  229 (315)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCE
Confidence            457889999998 8999999999999998 8999999843   2110  000  01233445567777778888889999


Q ss_pred             eEEccc
Q 028890          125 VISCVG  130 (202)
Q Consensus       125 vi~~a~  130 (202)
                      ||++..
T Consensus       230 IINaTp  235 (315)
T 3tnl_A          230 FTNATG  235 (315)
T ss_dssp             EEECSS
T ss_pred             EEECcc
Confidence            999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.92  E-value=5.1e-05  Score=61.34  Aligned_cols=103  Identities=17%  Similarity=0.241  Sum_probs=70.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCc------ccc---cCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSS------LRD---SWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~------~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      ..++|.|+|+ |.+|..++..|+..|.  +|+++++++++.      ...   ....++.+...|       .+.++++|
T Consensus         4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~-------~~a~~~aD   75 (326)
T 3pqe_A            4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGT-------YEDCKDAD   75 (326)
T ss_dssp             SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEEC-------GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCc-------HHHhCCCC
Confidence            4579999996 9999999999999986  899999865421      111   111234443333       23678999


Q ss_pred             EeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       124 ~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      +||.++|....+    .+.+..|......+++.+.+...+ .++.+|
T Consensus        76 vVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt  122 (326)
T 3pqe_A           76 IVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT  122 (326)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC
Confidence            999999964322    345677888888888888887655 444444

>2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1

Probab=97.92  E-value=6.2e-05  Score=61.24  Aligned_cols=91  Identities=14%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC---eEEEEe-cCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~-r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++|+|.||+|.+|+.+++.|+++++   +++.+. ++............+.+  .|. +++    .++++|+||.|.|.
T Consensus         6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i~s~~~~g~~~~~~g~~i~~--~~~-~~~----~~~~~DvV~~a~g~   78 (340)
T 2hjs_A            6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRV--GDV-DSF----DFSSVGLAFFAAAA   78 (340)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEEC--EEG-GGC----CGGGCSEEEECSCH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEEecCCCCCCccccCCcceEE--ecC-CHH----HhcCCCEEEEcCCc
Confidence            46899999999999999999997754   556554 32211111111111122  122 222    24689999999874


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .....++.+.+.|+ ++|.+|+
T Consensus        79 ~------------~s~~~a~~~~~aG~-kvId~Sa  100 (340)
T 2hjs_A           79 E------------VSRAHAERARAAGC-SVIDLSG  100 (340)
T ss_dssp             H------------HHHHHHHHHHHTTC-EEEETTC
T ss_pred             H------------HHHHHHHHHHHCCC-EEEEeCC
Confidence            2            23355666677776 5666665

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=97.92  E-value=7.4e-06  Score=66.25  Aligned_cols=77  Identities=18%  Similarity=0.142  Sum_probs=52.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH---HHh-cCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EAL-DGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~-~~~d~vi~~a  129 (202)
                      ..+++|+|+|++|.+|..+++.+...|++|++++|++.+.......-+... ..|..+.+..+   +.. .++|++|+|+
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~d~vi~~~  226 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDG-AIDYKNEDLAAGLKRECPKGIDVFFDNV  226 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSE-EEETTTSCHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCE-EEECCCHHHHHHHHHhcCCCceEEEECC
Confidence            457899999999999999999999999999999987644211101112222 23555544333   222 2599999999


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       227 g~  228 (336)
T 4b7c_A          227 GG  228 (336)
T ss_dssp             CH
T ss_pred             Cc
Confidence            84

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=97.90  E-value=1.7e-05  Score=64.23  Aligned_cols=71  Identities=14%  Similarity=0.110  Sum_probs=59.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      .++++|.|+ |.+|+.++++|.++|+ |++++++++...  ....++.++.+|.+|++.+.++ ++++|.+|.+.+
T Consensus       115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~~~~--~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~  186 (336)
T 1lnq_A          115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENVRKK--VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLE  186 (336)
T ss_dssp             -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGGHHH--HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCS
T ss_pred             cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChhhhh--HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCC
Confidence            458999997 9999999999999999 999988765432  2236789999999999999887 788999998764

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.89  E-value=7.4e-06  Score=69.37  Aligned_cols=74  Identities=15%  Similarity=0.253  Sum_probs=59.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      .|+|+|.|+ |-+|+++++.|.++|++|++++++++........-.+..+.+|.++++.+.++ ++++|.+|.+-+
T Consensus         3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~   77 (461)
T 4g65_A            3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTN   77 (461)
T ss_dssp             CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCS
T ss_pred             cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcC
Confidence            579999998 99999999999999999999998865422111123678999999999999876 567999886554

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.88  E-value=4e-05  Score=61.95  Aligned_cols=104  Identities=12%  Similarity=0.154  Sum_probs=63.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc--cCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD--SWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~--~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      +..+++|.|+|+ |.+|..++..|+..|.  +++++++++++..      .+  ....++.+...|       .+.++++
T Consensus         6 ~~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~-------~~a~~~a   77 (326)
T 3vku_A            6 DKDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAE-------YSDAKDA   77 (326)
T ss_dssp             -CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-------GGGGTTC
T ss_pred             cCCCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECc-------HHHhcCC
Confidence            456789999997 9999999999999886  8999998653211      01  111233433322       2457899


Q ss_pred             cEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          123 TAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       123 d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                      |+||.+||....    ..+.++.|..-...+++.+.+...+-++++
T Consensus        78 DiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilv  123 (326)
T 3vku_A           78 DLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLV  123 (326)
T ss_dssp             SEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEE
T ss_pred             CEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEE
Confidence            999999996432    245567777777788888887765544443

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=97.88  E-value=6e-06  Score=67.42  Aligned_cols=76  Identities=17%  Similarity=0.145  Sum_probs=52.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhh---HHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~--~~d~vi~~  128 (202)
                      ..+++|+|+||+|++|..+++.+...|++|++++|++.+.... ..-+.. ..+|..+.+.   +.+...  ++|++|+|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~~  238 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKLGAA-AGFNYKKEDFSEATLKFTKGAGVNLILDC  238 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHTCS-EEEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCc-EEEecCChHHHHHHHHHhcCCCceEEEEC
Confidence            3578999999999999999999999999999999875431111 001122 2246655433   333332  69999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       239 ~G~  241 (354)
T 2j8z_A          239 IGG  241 (354)
T ss_dssp             SCG
T ss_pred             CCc
Confidence            985

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.88  E-value=3.3e-06  Score=66.55  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=49.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++++++|+|+ |++|++++..|++.|++|++.+|+.++...  ........+...|+   +++.+  .++|+||+|++.
T Consensus       117 l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~---~~~~~--~~~DivVn~t~~  190 (271)
T 1nyt_A          117 RPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSM---DELEG--HEFDLIINATSS  190 (271)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCS---GGGTT--CCCSEEEECCSC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecH---HHhcc--CCCCEEEECCCC
Confidence            46789999998 899999999999999999999998543111  11111001212232   33322  589999999985


Q ss_pred             C
Q 028890          132 F  132 (202)
Q Consensus       132 ~  132 (202)
                      .
T Consensus       191 ~  191 (271)
T 1nyt_A          191 G  191 (271)
T ss_dssp             G
T ss_pred             C
Confidence            3

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.82  E-value=0.00029  Score=56.99  Aligned_cols=104  Identities=17%  Similarity=0.148  Sum_probs=68.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc------c-----cCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------D-----SWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~------~-----~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      ++++|.|+|| |.+|..++..|...|+ +|.+.+++++....      .     ....++...       .+++++++++
T Consensus         8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-------~d~~ea~~~a   79 (331)
T 1pzg_A            8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-------YSYEAALTGA   79 (331)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-------CSHHHHHTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEe-------CCHHHHhCCC
Confidence            3479999998 9999999999999998 99999987643111      0     001122111       2345578899


Q ss_pred             cEeEEccccCCCC---------ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          123 TAVISCVGGFGSN---------SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~~---------~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |+||.++|....+         ......|..-...+++.+.+...+-++.+.|
T Consensus        80 DiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  132 (331)
T 1pzg_A           80 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  132 (331)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence            9999999854322         2233455666667777777766554554544

>1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1

Probab=97.80  E-value=0.00012  Score=58.74  Aligned_cols=26  Identities=27%  Similarity=0.262  Sum_probs=23.6

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           66 GFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        66 G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |..|.++++.++++|++|+.+.+...
T Consensus        65 GkmG~aiAe~~~~~Ga~V~lv~g~~s   90 (313)
T 1p9o_A           65 GRRGATSAEAFLAAGYGVLFLYRARS   90 (313)
T ss_dssp             CHHHHHHHHHHHHTTCEEEEEEETTS
T ss_pred             cHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            88999999999999999999988643

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.79  E-value=0.00016  Score=58.03  Aligned_cols=104  Identities=15%  Similarity=0.173  Sum_probs=67.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc---cc------CCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---DS------WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~---~~------~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      +++|.|+|+ |.+|..++..|+..|+ +|.++++++.+...   ..      ......+...  .|   + +.++++|+|
T Consensus         2 ~~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d---~-~a~~~aD~V   74 (309)
T 1ur5_A            2 RKKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGT--NN---Y-ADTANSDVI   74 (309)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEE--SC---G-GGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEEC--CC---H-HHHCCCCEE
Confidence            368999998 9999999999999997 98888887543110   00      0111122110  12   2 457899999


Q ss_pred             EEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |.++|....+    ......|......+++.+.+...+.++++.|
T Consensus        75 i~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t  119 (309)
T 1ur5_A           75 VVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  119 (309)
T ss_dssp             EECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC
Confidence            9999864322    2334566677777888888877666666655

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=97.75  E-value=0.00013  Score=59.50  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=57.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc-ccCCCceeE-EEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR-DSWANNVIW-HQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~-~~~~~~~~~-~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +++|.|.||+|.+|+.+++.|.+++. +++.+.+....... ....+.+.- ....+.+.+   + +.++|+||.|.+..
T Consensus         4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~---~-~~~vDvV~~a~g~~   79 (345)
T 2ozp_A            4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPE---K-LEPADILVLALPHG   79 (345)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGG---G-CCCCSEEEECCCTT
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchh---H-hcCCCEEEEcCCcH
Confidence            57999999999999999999998765 88877654322111 000000000 011122332   2 47899999999753


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            +..+++.+.+.|+ ++|-.|+
T Consensus        80 ~------------s~~~a~~~~~aG~-~VId~Sa  100 (345)
T 2ozp_A           80 V------------FAREFDRYSALAP-VLVDLSA  100 (345)
T ss_dssp             H------------HHHTHHHHHTTCS-EEEECSS
T ss_pred             H------------HHHHHHHHHHCCC-EEEEcCc
Confidence            1            2344556667775 6887777

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.72  E-value=8.1e-05  Score=58.65  Aligned_cols=73  Identities=18%  Similarity=0.210  Sum_probs=44.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEE-EecCCCCcccccCC--CceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVAS-LSRSGRSSLRDSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~-l~r~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +++||.|+|++|.+|+.+++.+.+. ++++++ ++|+..........  .++..   ++.-.++++++++++|+||.+..
T Consensus         6 ~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~---gv~v~~dl~~ll~~~DVVIDfT~   82 (272)
T 4f3y_A            6 SSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQT---GVALTDDIERVCAEADYLIDFTL   82 (272)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCC---SCBCBCCHHHHHHHCSEEEECSC
T ss_pred             cccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCC---CceecCCHHHHhcCCCEEEEcCC
Confidence            3579999999999999999999887 567776 46654321100000  00100   12112345555667898888864

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=97.70  E-value=2.6e-05  Score=63.29  Aligned_cols=97  Identities=20%  Similarity=0.140  Sum_probs=62.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~--~~d~vi~~  128 (202)
                      ..+++|+|+|++|.+|..+++.+...|++|+++++++.+..... .-+... ..|..+.+   .+.+...  ++|++|++
T Consensus       165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~-~~ga~~-~~d~~~~~~~~~~~~~~~~~~~d~vi~~  242 (343)
T 2eih_A          165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK-ALGADE-TVNYTHPDWPKEVRRLTGGKGADKVVDH  242 (343)
T ss_dssp             CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HHTCSE-EEETTSTTHHHHHHHHTTTTCEEEEEES
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCE-EEcCCcccHHHHHHHHhCCCCceEEEEC
Confidence            35689999999999999999999999999999998754321110 012222 24665543   3444433  69999999


Q ss_pred             cccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          129 VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       129 a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +|. .    .       ....++.++..  ++++.+++
T Consensus       243 ~g~-~----~-------~~~~~~~l~~~--G~~v~~g~  266 (343)
T 2eih_A          243 TGA-L----Y-------FEGVIKATANG--GRIAIAGA  266 (343)
T ss_dssp             SCS-S----S-------HHHHHHHEEEE--EEEEESSC
T ss_pred             CCH-H----H-------HHHHHHhhccC--CEEEEEec
Confidence            982 1    1       11234444443  37888776

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=97.70  E-value=4.7e-05  Score=61.75  Aligned_cols=76  Identities=25%  Similarity=0.284  Sum_probs=50.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCC-C-HhhHHHHhc--CccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL-S-SDSWKEALD--GVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~-~-~~~~~~~~~--~~d~vi~~a  129 (202)
                      ..+.+|+|+||+|.+|...++.+...|++|+++++++.+.........-.++  |.. + .+.+.+...  ++|++|.|+
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~--~~~~~~~~~v~~~~~~~g~Dvvid~~  235 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVL--PLEEGWAKAVREATGGAGVDMVVDPI  235 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEE--ESSTTHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEe--cCchhHHHHHHHHhCCCCceEEEECC
Confidence            3578999999999999999999999999999999876542111100111222  332 2 223444443  599999999


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       236 g~  237 (342)
T 4eye_A          236 GG  237 (342)
T ss_dssp             C-
T ss_pred             ch
Confidence            85

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.69  E-value=5e-05  Score=57.62  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=48.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+++|.|+| +|.+|..+++.|.+.|++|++.+|+.+.... ....++...        ++.++++++|+||.+...
T Consensus        27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~-~~~~g~~~~--------~~~~~~~~~DvVi~av~~   93 (215)
T 2vns_A           27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNPKRTAR-LFPSAAQVT--------FQEEAVSSPEVIFVAVFR   93 (215)
T ss_dssp             --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSHHHHHH-HSBTTSEEE--------EHHHHTTSCSEEEECSCG
T ss_pred             CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCcee--------cHHHHHhCCCEEEECCCh
Confidence            457899999 6999999999999999999999987543211 111233321        345677889999998864

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.67  E-value=8.1e-05  Score=60.95  Aligned_cols=75  Identities=16%  Similarity=0.077  Sum_probs=55.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++.+.......-+... ..|..+.+.+.++..++|+||.++|.
T Consensus       187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~-v~~~~~~~~~~~~~~~~D~vid~~g~  261 (366)
T 1yqd_A          187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADS-FLVSRDQEQMQAAAGTLDGIIDTVSA  261 (366)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSE-EEETTCHHHHHHTTTCEEEEEECCSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCce-EEeccCHHHHHHhhCCCCEEEECCCc
Confidence            5679999996 999999999999999999999987654211110112222 24667777777777789999999985

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=97.67  E-value=4.5e-05  Score=61.74  Aligned_cols=76  Identities=14%  Similarity=0.184  Sum_probs=52.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~--~~d~vi~~  128 (202)
                      ..+.+|+|+|++|.+|...++.+...|++|+++++++.+...... -+... ..|..+.+   .+.+...  ++|++|.|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lga~~-~~~~~~~~~~~~~~~~~~~~g~Dvvid~  220 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLR-LGAAY-VIDTSTAPLYETVMELTNGIGADAAIDS  220 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-CCCcE-EEeCCcccHHHHHHHHhCCCCCcEEEEC
Confidence            357899999999999999999998899999999988765211110 11221 12444433   3333333  69999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       221 ~g~  223 (340)
T 3gms_A          221 IGG  223 (340)
T ss_dssp             SCH
T ss_pred             CCC
Confidence            985

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=97.66  E-value=0.00029  Score=56.56  Aligned_cols=106  Identities=16%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-C--CeEEEEecCCCC---ccc-ccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-G--LTVASLSRSGRS---SLR-DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g--~~V~~l~r~~~~---~~~-~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      |||.|+||+|.+|..++..|..+ +  .+++++++++..   ... ........+... ..  +...+.++++|+||.+|
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~-~~--~~~~~~~~~aDivii~a   77 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF-SG--EDATPALEGADVVLISA   77 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEE-CS--SCCHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEe-cC--CCcHHHhCCCCEEEEeC
Confidence            58999999999999999998875 5  488999887511   000 011112222211 00  11245678999999999


Q ss_pred             ccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          130 GGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       130 ~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |....    ..+.++.|..-...+.+.+.+...+ .++.+|
T Consensus        78 g~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt  118 (312)
T 3hhp_A           78 GVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT  118 (312)
T ss_dssp             SCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec
Confidence            96432    2456677888888888888887655 455444

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=97.66  E-value=2.8e-05  Score=63.36  Aligned_cols=76  Identities=21%  Similarity=0.190  Sum_probs=51.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhh---HHHHh-cCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEAL-DGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~-~~~d~vi~~a  129 (202)
                      ..+.+|+|+||+|.+|..+++.+...|++|+++++++.+...... -+... ..|..+.+.   +.+.. .++|++|.|+
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~-lGa~~-~~~~~~~~~~~~~~~~~~~g~Dvvid~~  243 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACER-LGAKR-GINYRSEDFAAVIKAETGQGVDIILDMI  243 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-HTCSE-EEETTTSCHHHHHHHHHSSCEEEEEESC
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh-cCCCE-EEeCCchHHHHHHHHHhCCCceEEEECC
Confidence            356899999999999999999999999999999987644211100 11111 135544332   22222 3699999999


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       244 g~  245 (353)
T 4dup_A          244 GA  245 (353)
T ss_dssp             CG
T ss_pred             CH
Confidence            85

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.64  E-value=0.00045  Score=55.57  Aligned_cols=104  Identities=10%  Similarity=0.104  Sum_probs=66.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------cc--CCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      +++||.|+|+ |++|..++-.|+..|.  +|.+++.++.+...      ..  ...++.+..   .+    .++++++|+
T Consensus         6 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~---~~----~~a~~~aDv   77 (318)
T 1y6j_A            6 SRSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYA---GD----YSDVKDCDV   77 (318)
T ss_dssp             -CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC-----C----GGGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEE---CC----HHHhCCCCE
Confidence            3468999998 9999999999999987  89999987643211      10  111222221   12    335789999


Q ss_pred             eEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       125 vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ||.++|....+    .+....|......+++.+.+...+-++.+.|
T Consensus        78 Vii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (318)
T 1y6j_A           78 IVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  123 (318)
T ss_dssp             EEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             EEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence            99999864322    2344667777778888888766555555544

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=97.62  E-value=7.4e-05  Score=59.44  Aligned_cols=75  Identities=23%  Similarity=0.227  Sum_probs=52.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+.+|+|+|++|.+|..+++.+...|++|+++++++.+..... .-+...+ .|..+.+++.+.+.++|++|. +|.
T Consensus       124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~~-~~~~~~~~~~~~~~~~d~vid-~g~  198 (302)
T 1iz0_A          124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPL-ALGAEEA-ATYAEVPERAKAWGGLDLVLE-VRG  198 (302)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHH-HTTCSEE-EEGGGHHHHHHHTTSEEEEEE-CSC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-hcCCCEE-EECCcchhHHHHhcCceEEEE-CCH
Confidence            45789999999999999999999999999999998755421111 1122222 355441334444578999999 874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=97.61  E-value=5.1e-06  Score=59.01  Aligned_cols=71  Identities=13%  Similarity=0.098  Sum_probs=49.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +++++|+|+ |.+|+.+++.|.+.|++|++.+|++.+.......-+....     ..+++.++++++|+||.+.+..
T Consensus        21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~-----~~~~~~~~~~~~Divi~at~~~   91 (144)
T 3oj0_A           21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYV-----LINDIDSLIKNNDVIITATSSK   91 (144)
T ss_dssp             CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEE-----ECSCHHHHHHTCSEEEECSCCS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceE-----eecCHHHHhcCCCEEEEeCCCC
Confidence            679999997 9999999999999999998889876542110000112221     2234566778999999998764

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=97.61  E-value=0.00032  Score=56.93  Aligned_cols=91  Identities=15%  Similarity=0.120  Sum_probs=56.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC---CeEEEEecC-CCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG---LTVASLSRS-GRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l~r~-~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++|.|.||+|.+|+.+++.|.+++   .+++++... ............+.+...|   ++    .+.++|+||.|.|.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~---~~----~~~~vDvVf~a~g~   75 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVE---EF----DWSQVHIALFSAGG   75 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGG---GC----CGGGCSEEEECSCH
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCC---hH----HhcCCCEEEECCCc
Confidence            5799999999999999999999984   367777632 1111111111122232222   22    23589999999875


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .....++.+.+.|+ ++|-.|+
T Consensus        76 ~------------~s~~~a~~~~~~G~-~vId~s~   97 (336)
T 2r00_A           76 E------------LSAKWAPIAAEAGV-VVIDNTS   97 (336)
T ss_dssp             H------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             h------------HHHHHHHHHHHcCC-EEEEcCC
Confidence            2            23345666667776 6777776

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.60  E-value=2.1e-05  Score=64.49  Aligned_cols=75  Identities=20%  Similarity=0.202  Sum_probs=53.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++++|+|+|+ |.+|+.+++.+...|++|++++|++.+...  ......+..   +..+.+.+.+.+.++|+||++.+.
T Consensus       165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~DvVI~~~~~  240 (361)
T 1pjc_A          165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVEL---LYSNSAEIETAVAEADLLIGAVLV  240 (361)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEE---EECCHHHHHHHHHTCSEEEECCCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEe---eeCCHHHHHHHHcCCCEEEECCCc
Confidence            34589999999 999999999999999999999998643211  111112212   223456677777899999999975


Q ss_pred             C
Q 028890          132 F  132 (202)
Q Consensus       132 ~  132 (202)
                      .
T Consensus       241 ~  241 (361)
T 1pjc_A          241 P  241 (361)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=97.59  E-value=3.3e-05  Score=62.22  Aligned_cols=76  Identities=24%  Similarity=0.187  Sum_probs=51.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~--~~d~vi~~  128 (202)
                      ..+++|+|+||+|.+|...++.+...|++|+++++++.+..... .-+... ..|..+.+   .+.+...  ++|++|.|
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~-~~~~~~~~~~~~~~~~~~~~g~Dvvid~  216 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK-ALGAWE-TIDYSHEDVAKRVLELTDGKKCPVVYDG  216 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSE-EEETTTSCHHHHHHHHTTTCCEEEEEES
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCE-EEeCCCccHHHHHHHHhCCCCceEEEEC
Confidence            35789999999999999999999999999999998754321111 011211 13444433   3334333  69999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       217 ~g~  219 (325)
T 3jyn_A          217 VGQ  219 (325)
T ss_dssp             SCG
T ss_pred             CCh
Confidence            985

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.58  E-value=5.6e-05  Score=60.31  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=52.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ..+++++|+|+ |++|+.++..|++.|+ +|++.+|+.++...  ........    ++.+.+++.+.+.++|+||++.+
T Consensus       139 l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~----~~~~~~~~~~~~~~aDivIn~t~  213 (297)
T 2egg_A          139 LDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS----AYFSLAEAETRLAEYDIIINTTS  213 (297)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSC----CEECHHHHHHTGGGCSEEEECSC
T ss_pred             CCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccC----ceeeHHHHHhhhccCCEEEECCC
Confidence            46789999998 8999999999999998 99999998643211  11111100    11233567777889999999987


Q ss_pred             c
Q 028890          131 G  131 (202)
Q Consensus       131 ~  131 (202)
                      .
T Consensus       214 ~  214 (297)
T 2egg_A          214 V  214 (297)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.57  E-value=7.1e-05  Score=59.14  Aligned_cols=69  Identities=19%  Similarity=0.093  Sum_probs=51.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .++++++|+|+ |++|++++..|.+.|+ +|++.+|+.++.....  .++...     ..+++.+++.++|+||++.+
T Consensus       115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la--~~~~~~-----~~~~~~~~~~~aDiVInaTp  184 (277)
T 3don_A          115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMSRFNNWS--LNINKI-----NLSHAESHLDEFDIIINTTP  184 (277)
T ss_dssp             GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCC--SCCEEE-----CHHHHHHTGGGCSEEEECCC
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHH--Hhcccc-----cHhhHHHHhcCCCEEEECcc
Confidence            45789999997 9999999999999998 8999999865432211  122222     34556777888999999864

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.57  E-value=0.00013  Score=58.55  Aligned_cols=78  Identities=14%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC---ccc--ccC--CCceeEEEccCCCHhhHHHHhcCccE
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS---SLR--DSW--ANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~---~~~--~~~--~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ..++++++|+|+ |++|++++..|.+.|. +|++.+|+...   ...  ...  ..+..+...++.+.+.+.+.+.++|+
T Consensus       145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~Di  223 (312)
T 3t4e_A          145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADI  223 (312)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSE
T ss_pred             CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceE
Confidence            456889999998 9999999999999998 89999998432   110  000  01233334455555445666778999


Q ss_pred             eEEcccc
Q 028890          125 VISCVGG  131 (202)
Q Consensus       125 vi~~a~~  131 (202)
                      ||++-+.
T Consensus       224 IINaTp~  230 (312)
T 3t4e_A          224 LTNGTKV  230 (312)
T ss_dssp             EEECSST
T ss_pred             EEECCcC
Confidence            9998653

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=97.57  E-value=6.4e-05  Score=61.05  Aligned_cols=76  Identities=22%  Similarity=0.268  Sum_probs=52.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhh---HHHHhc--CccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEALD--GVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~--~~d~vi~  127 (202)
                      ..+++|+|+|++|.+|..+++.+... |++|+++++++.+..... .-+... ..|..+.+.   +.++..  ++|++|+
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~  246 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADY-VINASMQDPLAEIRRITESKGVDAVID  246 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH-HhCCCE-EecCCCccHHHHHHHHhcCCCceEEEE
Confidence            35689999999889999999999998 999999998754321110 011221 235554333   555553  6999999


Q ss_pred             cccc
Q 028890          128 CVGG  131 (202)
Q Consensus       128 ~a~~  131 (202)
                      |+|.
T Consensus       247 ~~g~  250 (347)
T 1jvb_A          247 LNNS  250 (347)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            9985

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=97.56  E-value=8e-05  Score=60.10  Aligned_cols=76  Identities=16%  Similarity=0.150  Sum_probs=51.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~--~~d~vi~~  128 (202)
                      ..+.+|+|+||+|.+|...++.+...|++|+++++++.+..... .-+... ..|..+.+   .+.+...  ++|++|.|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~~ga~~-~~~~~~~~~~~~~~~~~~~~g~D~vid~  224 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK-EYGAEY-LINASKEDILRQVLKFTNGKGVDASFDS  224 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcE-EEeCCCchHHHHHHHHhCCCCceEEEEC
Confidence            46789999999999999999999999999999998654321111 112221 13444433   3444432  59999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       225 ~g~  227 (334)
T 3qwb_A          225 VGK  227 (334)
T ss_dssp             CGG
T ss_pred             CCh
Confidence            985

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.56  E-value=0.00063  Score=54.83  Aligned_cols=103  Identities=16%  Similarity=0.124  Sum_probs=69.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcc------ccc---CCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL------RDS---WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~------~~~---~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      +++|.|+|+ |.+|..++..|+..|. +|+++++++....      ...   ......+...+  |.    ++++++|+|
T Consensus         5 ~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~--d~----~a~~~aDvV   77 (321)
T 3p7m_A            5 RKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTN--DY----KDLENSDVV   77 (321)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEES--CG----GGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcC--CH----HHHCCCCEE
Confidence            579999996 9999999999999988 9999998865421      110   01122222111  22    467899999


Q ss_pred             EEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |.++|....+    .+.+..|......+++.+.+...+ .++.+|
T Consensus        78 Ii~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  122 (321)
T 3p7m_A           78 IVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT  122 (321)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             EEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            9999864332    234567777778888888887655 455554

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=97.55  E-value=0.00055  Score=55.23  Aligned_cols=105  Identities=15%  Similarity=0.159  Sum_probs=71.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcc------ccc---CCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL------RDS---WANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~------~~~---~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ++++|.|+|+ |.+|..++..|+..|+ +|+++++++....      ...   ......+...  .|.    ++++++|+
T Consensus         6 ~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t--~d~----~a~~~aDi   78 (324)
T 3gvi_A            6 ARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGA--NDY----AAIEGADV   78 (324)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE--SSG----GGGTTCSE
T ss_pred             cCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEe--CCH----HHHCCCCE
Confidence            4579999998 9999999999999998 9999998875421      000   0112222211  122    46789999


Q ss_pred             eEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          125 VISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       125 vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      ||.++|....    ..+.+..|..-...+++.+.+...+ .++.+|.
T Consensus        79 VIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           79 VIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             EEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             EEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            9999986432    2345677877788888888887655 4555543

>1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A*

Probab=97.55  E-value=0.00094  Score=54.80  Aligned_cols=88  Identities=17%  Similarity=0.286  Sum_probs=51.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHH-CCC---eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALD-RGL---TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~-~g~---~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |++|.|.||+|++|+.+++.|+. +++   +++.+..+.......... +......|..+++.    ++++|+||.|.|.
T Consensus         1 m~kVaIvGAtG~vG~~llr~ll~~~~~~~v~i~~~~~~s~G~~v~~~~-g~~i~~~~~~~~~~----~~~~DvVf~a~g~   75 (367)
T 1t4b_A            1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFG-GTTGTLQDAFDLEA----LKALDIIVTCQGG   75 (367)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGG-TCCCBCEETTCHHH----HHTCSEEEECSCH
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhcCCCCeEEEEEEEeCCCCCCccccC-CCceEEEecCChHH----hcCCCEEEECCCc
Confidence            46899999999999999995555 443   555555432111111011 11222223434443    3589999999874


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCE
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKR  160 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  160 (202)
                                  ......+..+.+.|.++
T Consensus        76 ------------~~s~~~a~~~~~~G~k~   92 (367)
T 1t4b_A           76 ------------DYTNEIYPKLRESGWQG   92 (367)
T ss_dssp             ------------HHHHHHHHHHHHTTCCC
T ss_pred             ------------hhHHHHHHHHHHCCCCE
Confidence                        22334456666777643

>3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A*

Probab=97.54  E-value=8.2e-05  Score=53.68  Aligned_cols=66  Identities=9%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             ChhHHHHHHHHHHCCCeEEEEecCCCCccc--------ccCCCceeEEEccCCCH--hhHHHHhc------CccEeEEcc
Q 028890           66 GFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSS--DSWKEALD------GVTAVISCV  129 (202)
Q Consensus        66 G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--------~~~~~~~~~~~~D~~~~--~~~~~~~~------~~d~vi~~a  129 (202)
                      |.++.+.++.|.+.|++|++..|+......        .....+...+.+|+.++  +++.++++      +-|++||||
T Consensus        26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~~~~~~~~~~~~G~~~~~i~~Dv~~~~~~~v~~~~~~i~~~~G~dVLVnnA  105 (157)
T 3gxh_A           26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDAHPDEGKLVTQAGMDYVYIPVDWQNPKVEDVEAFFAAMDQHKGKDVLVHCL  105 (157)
T ss_dssp             BCCCHHHHHHHHHTTCCEEEECSCTTSTTSCTTHHHHHHHTTCEEEECCCCTTSCCHHHHHHHHHHHHHTTTSCEEEECS
T ss_pred             CCCCHHHHHHHHHcCCCEEEECCCcccccccccHHHHHHHcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCCEEEECC
Confidence            578899999999999999888776543211        11133566778899998  87776654      239999999


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       106 gg  107 (157)
T 3gxh_A          106 AN  107 (157)
T ss_dssp             BS
T ss_pred             CC
Confidence            86

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=97.54  E-value=0.00016  Score=61.09  Aligned_cols=92  Identities=15%  Similarity=0.264  Sum_probs=60.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-C---eEEEEecCCCCcccccCCCceeEEEccCC--CH-hhHHHHhcCccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-L---TVASLSRSGRSSLRDSWANNVIWHQGNLL--SS-DSWKEALDGVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~---~V~~l~r~~~~~~~~~~~~~~~~~~~D~~--~~-~~~~~~~~~~d~vi~~  128 (202)
                      .++|+|.|+ |+||+.+++.|++++ +   +|++.+........ ....++.+...++.  |. +.+.+++++.|+||+.
T Consensus        13 ~~rVlIIGa-GgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~~-~~~~g~~~~~~~Vdadnv~~~l~aLl~~~DvVIN~   90 (480)
T 2ph5_A           13 KNRFVILGF-GCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDV-AQQYGVSFKLQQITPQNYLEVIGSTLEENDFLIDV   90 (480)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCCH-HHHHTCEEEECCCCTTTHHHHTGGGCCTTCEEEEC
T ss_pred             CCCEEEECc-CHHHHHHHHHHHhCCCCceeEEEEeccchhhhhH-HhhcCCceeEEeccchhHHHHHHHHhcCCCEEEEC
Confidence            458999995 999999999999874 4   68888765543211 11114456665553  44 3355677777999986


Q ss_pred             cccCCCCccchhhhHHHHHHHHHHHHHcCCCEEE
Q 028890          129 VGGFGSNSYMYKINGTANINAIRAASEKGVKRFV  162 (202)
Q Consensus       129 a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v  162 (202)
                      +.+.            ....++++|.+.|+ .++
T Consensus        91 s~~~------------~~l~Im~acleaGv-~Yl  111 (480)
T 2ph5_A           91 SIGI------------SSLALIILCNQKGA-LYI  111 (480)
T ss_dssp             CSSS------------CHHHHHHHHHHHTC-EEE
T ss_pred             Cccc------------cCHHHHHHHHHcCC-CEE
Confidence            6432            12356899999886 444

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.54  E-value=0.00032  Score=56.34  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=68.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc---cCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |+|.|+|+ |.+|..++..|+..|.  +|+++++++.+..      .+   ....+..+...|  +    .+.++++|+|
T Consensus         1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~--~----~~a~~~aDvV   73 (314)
T 3nep_X            1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTN--D----YGPTEDSDVC   73 (314)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEES--S----SGGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECC--C----HHHhCCCCEE
Confidence            58999997 9999999999999886  8999998875411      00   001122332122  1    2467899999


Q ss_pred             EEccccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |.++|....    ..+.+..|..-...+++.+.+...+ .++.+|
T Consensus        74 ii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt  118 (314)
T 3nep_X           74 IITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA  118 (314)
T ss_dssp             EECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC
T ss_pred             EECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC
Confidence            999996432    2456677888888888888887655 444444

>3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A

Probab=97.53  E-value=0.00088  Score=54.90  Aligned_cols=91  Identities=16%  Similarity=0.208  Sum_probs=53.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCC-CcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGR-SSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++|.|.||||++|..|++.|.++++   ++..+.-... ............+.  ++. ++    .++++|+||.|.+.
T Consensus         2 ~~kVaIvGATG~vG~eLlrlL~~~~~p~~el~~~as~~saG~~~~~~~~~~~~~--~~~-~~----~~~~~Dvvf~a~~~   74 (366)
T 3pwk_A            2 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIE--ETT-ET----AFEGVDIALFSAGS   74 (366)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCCCEEEEEEEECTTTTTCEEEETTEEEEEE--ECC-TT----TTTTCSEEEECSCH
T ss_pred             CcEEEEECCCChHHHHHHHHHhcCCCCcEEEEEEEccccCCCcceecCCCceEe--eCC-HH----HhcCCCEEEECCCh
Confidence            46899999999999999998888765   4444442211 11111111112222  221 22    24689999999874


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .....+..+.+.|+ ++|-.|+
T Consensus        75 ~------------~s~~~a~~~~~~G~-~vIDlSa   96 (366)
T 3pwk_A           75 S------------TSAKYAPYAVKAGV-VVVDNTS   96 (366)
T ss_dssp             H------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             H------------hHHHHHHHHHHCCC-EEEEcCC
Confidence            1            12234455556665 6666666

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=97.53  E-value=0.00086  Score=54.24  Aligned_cols=106  Identities=16%  Similarity=0.127  Sum_probs=72.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCc------ccc--cCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSS------LRD--SWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~------~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      ...++|.|+|+ |.+|..++..|+.+|.  ++++++++.+..      ..+  ........+..+  |.+    .++++|
T Consensus        17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~--d~~----~~~~aD   89 (331)
T 4aj2_A           17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSK--DYS----VTANSK   89 (331)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECS--SGG----GGTTEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcC--CHH----HhCCCC
Confidence            45679999998 9999999999999987  899999865321      111  011122222221  232    478999


Q ss_pred             EeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      +||.+||....    ..+.++.|..-...+.+.+.+...+ .++.+|.
T Consensus        90 iVvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           90 LVIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            99999996432    3467788888888888888887655 4555543

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=97.53  E-value=0.00013  Score=59.69  Aligned_cols=92  Identities=18%  Similarity=0.288  Sum_probs=56.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc--c---cCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--D---SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~--~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      +++|.|.||+|.+|+.+++.|.+++. +++++.+.......  .   .+...+   ..|+.-.+  ++.++++|+||.|.
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v---~~dl~~~~--~~~~~~vDvVf~at   90 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQK---LPTLVSVK--DADFSTVDAVFCCL   90 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSC---CCCCBCGG--GCCGGGCSEEEECC
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcc---cccceecc--hhHhcCCCEEEEcC
Confidence            46899999999999999999998864 88887654322111  0   011111   12332222  33456899999999


Q ss_pred             ccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       130 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +...            +...+..+ +.|+ ++|-.|+
T Consensus        91 p~~~------------s~~~a~~~-~aG~-~VId~sa  113 (359)
T 1xyg_A           91 PHGT------------TQEIIKEL-PTAL-KIVDLSA  113 (359)
T ss_dssp             CTTT------------HHHHHHTS-CTTC-EEEECSS
T ss_pred             Cchh------------HHHHHHHH-hCCC-EEEECCc
Confidence            7532            12345555 5565 6777776

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=97.50  E-value=0.00035  Score=55.62  Aligned_cols=102  Identities=15%  Similarity=0.090  Sum_probs=69.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc---cCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |+|.|+|+ |.+|..++..|+.+|+  +|.+++++++...      ..   .......+...  .|    .++++++|+|
T Consensus         1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t--~d----~~a~~~aDiV   73 (294)
T 1oju_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGG--AD----YSLLKGSEII   73 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEE--SC----GGGGTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEe--CC----HHHhCCCCEE
Confidence            58999999 9999999999999988  8999998764311      00   01122222211  12    3467899999


Q ss_pred             EEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |.++|....+    .+.+..|..-...+++.+.+.+.+ .++.+|
T Consensus        74 Viaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs  118 (294)
T 1oju_A           74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             EECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            9999964322    345667777777888888887655 444444

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=97.50  E-value=0.00042  Score=55.13  Aligned_cols=103  Identities=16%  Similarity=0.082  Sum_probs=70.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCc------ccc---cCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSS------LRD---SWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~------~~~---~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |||.|+|+ |++|+.++-.|+.++.  ++.+++.++...      ..+   ...........+  |.    +.++++|+|
T Consensus         1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~--d~----~~~~~aDvV   73 (294)
T 2x0j_A            1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKGSEII   73 (294)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEES--CG----GGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCC--CH----HHhCCCCEE
Confidence            68999996 9999999999988874  889888865321      001   111222333221  22    246899999


Q ss_pred             EEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |-.||....    ..+.++.|..-...+++.+.+...+-++.+=|
T Consensus        74 vitAG~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs  118 (294)
T 2x0j_A           74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (294)
T ss_dssp             EECCCCCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             EEecCCCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec
Confidence            999996442    35677888888888899998887665554444

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=97.50  E-value=0.00021  Score=57.97  Aligned_cols=94  Identities=13%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHh--cCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL--DGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~--~~~d~vi~~a~~  131 (202)
                      ++++|+||+|.+|...++.+...|++|+++++++.+..... .-+... ..|..+.+   .+.++.  .++|++|.|+|.
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~-~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~  243 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLK-DIGAAH-VLNEKAPDFEATLREVMKAEQPRIFLDAVTG  243 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHH-HHTCSE-EEETTSTTHHHHHHHHHHHHCCCEEEESSCH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCCE-EEECCcHHHHHHHHHHhcCCCCcEEEECCCC
Confidence            78999999999999999999989999999998765421111 011221 13444433   233333  279999999985


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .....++.++..  ++++.+++
T Consensus       244 ~------------~~~~~~~~l~~~--G~iv~~G~  264 (349)
T 3pi7_A          244 P------------LASAIFNAMPKR--ARWIIYGR  264 (349)
T ss_dssp             H------------HHHHHHHHSCTT--CEEEECCC
T ss_pred             h------------hHHHHHhhhcCC--CEEEEEec
Confidence            1            112334444333  58998875

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.50  E-value=4.9e-05  Score=62.68  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=55.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+++|+|+|+ |.+|..+++.+...|++|++.+|++.+..  .......+   ..+..+.+++.+.+.++|+||.+++.
T Consensus       166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~---~~~~~~~~~l~~~l~~aDvVi~~~~~  241 (377)
T 2vhw_A          166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRI---HTRYSSAYELEGAVKRADLVIGAVLV  241 (377)
T ss_dssp             BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSS---EEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCee---EeccCCHHHHHHHHcCCCEEEECCCc
Confidence            46789999998 99999999999999999999998764321  11111222   12344566788888899999999875


Q ss_pred             C
Q 028890          132 F  132 (202)
Q Consensus       132 ~  132 (202)
                      .
T Consensus       242 p  242 (377)
T 2vhw_A          242 P  242 (377)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=97.50  E-value=0.00022  Score=57.33  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=69.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCC--CCcc------ccc---CCCceeEEEccCCCHhhHHHHhcCc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG--RSSL------RDS---WANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~--~~~~------~~~---~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      +.++|.|+|+ |.+|..++..|+..|+ +|+++++++  ....      ...   ......+...+  |.    +.++++
T Consensus         7 ~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~--d~----~a~~~a   79 (315)
T 3tl2_A            7 KRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTS--DY----ADTADS   79 (315)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEES--CG----GGGTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcC--CH----HHhCCC
Confidence            4569999997 9999999999999999 999999873  2110      000   00111122111  22    467899


Q ss_pred             cEeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          123 TAVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       123 d~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |+||.++|....+    .+.+..|..-...+++.+.+.+.+ .++.+|
T Consensus        80 DvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs  127 (315)
T 3tl2_A           80 DVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT  127 (315)
T ss_dssp             SEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC
Confidence            9999999864432    345677877788888888877655 455554

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=97.49  E-value=0.00012  Score=59.75  Aligned_cols=97  Identities=22%  Similarity=0.160  Sum_probs=60.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHh-cCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL-DGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~-~~~d~vi~~a  129 (202)
                      ..+.+|+|+||+|.+|..+++.+...|++|+++++++.+..... .-+...+ .|..+.+   .+.+.. .++|++|.|+
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~-~~Ga~~~-~~~~~~~~~~~~~~~~~~g~D~vid~~  239 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLK-SLGCDRP-INYKTEPVGTVLKQEYPEGVDVVYESV  239 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTCSEE-EETTTSCHHHHHHHHCTTCEEEEEECS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HcCCcEE-EecCChhHHHHHHHhcCCCCCEEEECC
Confidence            35679999999999999999999999999999998754311110 1122221 2444322   232222 2689999999


Q ss_pred             ccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       130 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |.     .       .....++.++..  ++++.+++
T Consensus       240 g~-----~-------~~~~~~~~l~~~--G~iv~~g~  262 (362)
T 2c0c_A          240 GG-----A-------MFDLAVDALATK--GRLIVIGF  262 (362)
T ss_dssp             CT-----H-------HHHHHHHHEEEE--EEEEECCC
T ss_pred             CH-----H-------HHHHHHHHHhcC--CEEEEEeC
Confidence            84     1       112334444443  37888876

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=97.48  E-value=0.00065  Score=55.82  Aligned_cols=70  Identities=16%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ..+++|+|.|+ |.+|+.+++.+.+.|++|++++.++.......   --.++..|+.|.+.+.++.+.+|+|..
T Consensus        10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~---ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A           10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYV---AHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTGGG---SSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhhhh---CCEEEECCCCCHHHHHHHHHhCCccee
Confidence            35789999997 99999999999999999999987654321111   124667899999999999988998754

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=97.48  E-value=0.00029  Score=56.10  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=33.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .+++|.|.||.|.+|..++..|.+.|++|++.+|++.
T Consensus        20 ~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~   56 (298)
T 2pv7_A           20 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   56 (298)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc
Confidence            4568999998899999999999999999999988753

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=97.48  E-value=0.00058  Score=55.36  Aligned_cols=94  Identities=14%  Similarity=0.149  Sum_probs=57.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCC---C--Cccc----ccCC-CceeEEEccCCCHhhHHHHhcCcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSG---R--SSLR----DSWA-NNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~---~--~~~~----~~~~-~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      .|++|.|.|+||++|..+++.|.+. .+++..+..+.   .  +...    .... ....+...  .+.+   ++++++|
T Consensus         3 ~M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~--~~~~---~~~~~~D   77 (337)
T 3dr3_A            3 AMLNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPM--SDIS---EFSPGVD   77 (337)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEE--SSGG---GTCTTCS
T ss_pred             CceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEecc--CCHH---HHhcCCC
Confidence            3579999999999999999999986 45887775433   1  1111    0111 12233222  0222   2337899


Q ss_pred             EeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          124 AVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +||.|.+..            ....++..+.+.|. ++|-.|+
T Consensus        78 vvf~a~p~~------------~s~~~~~~~~~~g~-~vIDlSa  107 (337)
T 3dr3_A           78 VVFLATAHE------------VSHDLAPQFLEAGC-VVFDLSG  107 (337)
T ss_dssp             EEEECSCHH------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             EEEECCChH------------HHHHHHHHHHHCCC-EEEEcCC
Confidence            999998641            12244555567775 7777777

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=97.47  E-value=0.00047  Score=56.22  Aligned_cols=92  Identities=17%  Similarity=0.226  Sum_probs=56.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC-CeEEEEe--cCCC-Ccccc--cCC---------CceeEEEccCCCHhhHHHHh
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG-LTVASLS--RSGR-SSLRD--SWA---------NNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~--r~~~-~~~~~--~~~---------~~~~~~~~D~~~~~~~~~~~  119 (202)
                      ++++|.|.||+|.+|+.+++.|.+.+ .+++++.  ++.. +....  .+.         ..+.+  .|. |++.    +
T Consensus         3 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~-d~~~----~   75 (350)
T 2ep5_A            3 DKIKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPI--VST-NYED----H   75 (350)
T ss_dssp             CCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBE--ECS-SGGG----G
T ss_pred             CCcEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEE--eeC-CHHH----h
Confidence            35789999999999999999998875 4887775  2211 11110  000         01122  222 3332    3


Q ss_pred             cCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          120 DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +++|+||.|.+..            .+..++..+.+.|. ++|-.|+
T Consensus        76 ~~vDvVf~atp~~------------~s~~~a~~~~~aG~-~VId~s~  109 (350)
T 2ep5_A           76 KDVDVVLSALPNE------------LAESIELELVKNGK-IVVSNAS  109 (350)
T ss_dssp             TTCSEEEECCCHH------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             cCCCEEEECCChH------------HHHHHHHHHHHCCC-EEEECCc
Confidence            6899999888642            23355667777786 5666665

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.47  E-value=0.00044  Score=48.75  Aligned_cols=88  Identities=17%  Similarity=0.270  Sum_probs=56.1

Q ss_pred             CCCCeEEEEccC---ChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~---G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .+.++|.|.|++   |.+|..+++.|++.|++|+.++.+....      .++.+       ..++.++.+.+|+++-+..
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i------~G~~~-------~~s~~el~~~vDlvii~vp   78 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------EGLKC-------YRSVRELPKDVDVIVFVVP   78 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEEC-------BSSGGGSCTTCCEEEECSC
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE------CCeee-------cCCHHHhCCCCCEEEEEeC
Confidence            356789999997   8999999999999999988776553111      12211       1223344457888887764


Q ss_pred             cCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .....+++.+.+.|++.++..++
T Consensus        79 ~------------~~v~~v~~~~~~~g~~~i~~~~~  102 (138)
T 1y81_A           79 P------------KVGLQVAKEAVEAGFKKLWFQPG  102 (138)
T ss_dssp             H------------HHHHHHHHHHHHTTCCEEEECTT
T ss_pred             H------------HHHHHHHHHHHHcCCCEEEEcCc
Confidence            3            22234455566678777666554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.47  E-value=0.0003  Score=55.78  Aligned_cols=75  Identities=20%  Similarity=0.256  Sum_probs=43.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEE-ecCCCCcccc--cCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSSLRD--SWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l-~r~~~~~~~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      .++.||.|.|++|.+|+.+++.+.+. +.++.+. +|++......  ....++.  ..++.-.+++++++.++|++|.+.
T Consensus        19 ~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~--~~gv~v~~dl~~ll~~aDVvIDFT   96 (288)
T 3ijp_A           19 PGSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSD--FLGVRITDDPESAFSNTEGILDFS   96 (288)
T ss_dssp             --CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCS--CCSCBCBSCHHHHTTSCSEEEECS
T ss_pred             cCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccC--cCCceeeCCHHHHhcCCCEEEEcC
Confidence            45679999999999999999999876 6677665 5543221000  0000000  011111234556666788888766


Q ss_pred             c
Q 028890          130 G  130 (202)
Q Consensus       130 ~  130 (202)
                      .
T Consensus        97 ~   97 (288)
T 3ijp_A           97 Q   97 (288)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.47  E-value=0.00071  Score=52.49  Aligned_cols=98  Identities=14%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCC--ceeEEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWAN--NVIWHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~--~~~~~~~  107 (202)
                      ++++|+|.|+ |++|+++++.|...|. ++++++++.-..  ..                      ....+  .++.+..
T Consensus        30 ~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           30 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            4579999997 9999999999999997 899898875210  00                      00112  2344444


Q ss_pred             cCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ++. .+.+.+.+.++|+||.+....           ..-..+.++|.+.++ .+|+.+.
T Consensus       109 ~~~-~~~~~~~~~~~DvVi~~~d~~-----------~~~~~l~~~~~~~~~-p~i~~~~  154 (249)
T 1jw9_B          109 LLD-DAELAALIAEHDLVLDCTDNV-----------AVRNQLNAGCFAAKV-PLVSGAA  154 (249)
T ss_dssp             CCC-HHHHHHHHHTSSEEEECCSSH-----------HHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             cCC-HhHHHHHHhCCCEEEEeCCCH-----------HHHHHHHHHHHHcCC-CEEEeee
Confidence            554 456777888999999887431           122344566766664 4555543

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.47  E-value=1.6e-05  Score=63.08  Aligned_cols=74  Identities=8%  Similarity=0.113  Sum_probs=52.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccc--cC---CCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD--SW---ANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~--~~---~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      ..++++++|+|+ |++|++++..|.+.|. +|++.+|+.++....  ..   ...+.+...+.   +++.+.+.++|+||
T Consensus       124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~---~~l~~~l~~~DiVI  199 (283)
T 3jyo_A          124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDA---RGIEDVIAAADGVV  199 (283)
T ss_dssp             TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECS---TTHHHHHHHSSEEE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCH---HHHHHHHhcCCEEE
Confidence            356789999998 9999999999999998 799999986542110  00   01223333333   44566777899999


Q ss_pred             Eccc
Q 028890          127 SCVG  130 (202)
Q Consensus       127 ~~a~  130 (202)
                      ++..
T Consensus       200 naTp  203 (283)
T 3jyo_A          200 NATP  203 (283)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            9875

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=97.45  E-value=0.00052  Score=56.02  Aligned_cols=92  Identities=18%  Similarity=0.176  Sum_probs=55.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCC---cccccCC-----------CceeEEEccCCCHhhHHHHhc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRS---SLRDSWA-----------NNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~---~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      +++|.|.||+|.+|+.+++.|.+++ .+|+++.++...   .......           ..+.+...   +++   ++++
T Consensus         8 ~~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~   81 (354)
T 1ys4_A            8 KIKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPT---DPK---HEEF   81 (354)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEES---CTT---SGGG
T ss_pred             cceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeC---CHH---HHhc
Confidence            3689999999999999999998875 588888653221   1110000           01111111   222   2345


Q ss_pred             -CccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          121 -GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       121 -~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                       ++|+||.|.+..            ....+++.+.+.|. ++|-.|+
T Consensus        82 ~~~DvV~~atp~~------------~~~~~a~~~~~aG~-~VId~s~  115 (354)
T 1ys4_A           82 EDVDIVFSALPSD------------LAKKFEPEFAKEGK-LIFSNAS  115 (354)
T ss_dssp             TTCCEEEECCCHH------------HHHHHHHHHHHTTC-EEEECCS
T ss_pred             CCCCEEEECCCch------------HHHHHHHHHHHCCC-EEEECCc
Confidence             899999998752            12334556667775 5666665

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=97.42  E-value=0.00034  Score=57.35  Aligned_cols=75  Identities=15%  Similarity=0.107  Sum_probs=49.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh--cCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL--DGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi~~a~~  131 (202)
                      ..+.+|+|+||+|.+|...++.+...|++|+++++. .+ ......-+... ..|..+.+..+++.  .++|++|.|+|.
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~-~~-~~~~~~lGa~~-v~~~~~~~~~~~~~~~~g~D~vid~~g~  258 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQ-DA-SELVRKLGADD-VIDYKSGSVEEQLKSLKPFDFILDNVGG  258 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECG-GG-HHHHHHTTCSE-EEETTSSCHHHHHHTSCCBSEEEESSCT
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCh-HH-HHHHHHcCCCE-EEECCchHHHHHHhhcCCCCEEEECCCC
Confidence            356799999999999999999999999999988743 22 11111112222 13555443333333  479999999985

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.41  E-value=0.0015  Score=53.09  Aligned_cols=107  Identities=18%  Similarity=0.136  Sum_probs=69.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCc--------ccc-cCCCceeEEEccCCCHhhHHHH
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSS--------LRD-SWANNVIWHQGNLLSSDSWKEA  118 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~--------~~~-~~~~~~~~~~~D~~~~~~~~~~  118 (202)
                      +..||.|+||+|.||+.++-.|.....       ++.+++..+...        ... ...........     .+..++
T Consensus        23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~~~~~~~~-----~~~~~a   97 (345)
T 4h7p_A           23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPLLDKVVVT-----ADPRVA   97 (345)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTTEEEEEEE-----SCHHHH
T ss_pred             CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccCCCcEEEc-----CChHHH
Confidence            445999999999999999988877542       677777654211        111 11111222222     123567


Q ss_pred             hcCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcC-CC-EEEEEec
Q 028890          119 LDGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKG-VK-RFVYISA  166 (202)
Q Consensus       119 ~~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~-~~-~~v~~SS  166 (202)
                      ++++|+||-.||....    ..+.++.|..-...+.+.+.+.. .. +++.+|.
T Consensus        98 ~~~advVvi~aG~prkpGmtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsN  151 (345)
T 4h7p_A           98 FDGVAIAIMCGAFPRKAGMERKDLLEMNARIFKEQGEAIAAVAASDCRVVVVGN  151 (345)
T ss_dssp             TTTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             hCCCCEEEECCCCCCCCCCCHHHHHHHhHHHHHHHHHHHHhhccCceEEEEeCC
Confidence            8999999999996543    24567888888888888887753 33 4555553

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=97.41  E-value=0.00053  Score=57.97  Aligned_cols=99  Identities=18%  Similarity=0.340  Sum_probs=72.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~~  132 (202)
                      ..++++|.|| |.+|.++++.| +++++|.++.++..+... ...-++..++.+|.+|++-+.+. ++++|++|..-+. 
T Consensus       234 ~~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~~r~~~la~~l~~~~Vi~GD~td~~~L~ee~i~~~D~~ia~T~~-  310 (461)
T 4g65_A          234 PYRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNLQRAEKLSEELENTIVFCGDAADQELLTEENIDQVDVFIALTNE-  310 (461)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCHHHHHHHHHHCTTSEEEESCTTCHHHHHHTTGGGCSEEEECCSC-
T ss_pred             cccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCHHHHHHHHHHCCCceEEeccccchhhHhhcCchhhcEEEEcccC-
Confidence            3568999998 99999999987 567899999887654211 11235788999999999988764 5678999877653 


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                            -+.|+...+    .|++.|+++.|-.-.
T Consensus       311 ------De~Ni~~~l----lAk~~gv~kvIa~vn  334 (461)
T 4g65_A          311 ------DETNIMSAM----LAKRMGAKKVMVLIQ  334 (461)
T ss_dssp             ------HHHHHHHHH----HHHHTTCSEEEEECS
T ss_pred             ------cHHHHHHHH----HHHHcCCcccccccc
Confidence                  246666555    567788887775433

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.40  E-value=3e-05  Score=61.55  Aligned_cols=73  Identities=14%  Similarity=0.140  Sum_probs=48.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc--cCCCc---eeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--SWANN---VIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~--~~~~~---~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      .++++++|+|+ |++|++++..|++.| +|++.+|+.++....  .....   ...+.+|+.+.   .+.+.++|++|+|
T Consensus       126 l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~---~~~~~~~DilVn~  200 (287)
T 1nvt_A          126 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGL---DVDLDGVDIIINA  200 (287)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECT---TCCCTTCCEEEEC
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeH---HHhhCCCCEEEEC
Confidence            46789999998 599999999999999 999999875431110  00000   00112233331   3345679999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      ++.
T Consensus       201 ag~  203 (287)
T 1nvt_A          201 TPI  203 (287)
T ss_dssp             SCT
T ss_pred             CCC
Confidence            985

>3uw3_A Aspartate-semialdehyde dehydrogenase; structural genomics, seattle structural genomics center for infectious disease (ssgcid); 1.55A {Burkholderia thailandensis}

Probab=97.40  E-value=0.002  Score=53.01  Aligned_cols=94  Identities=18%  Similarity=0.213  Sum_probs=54.2

Q ss_pred             CCCeEEEEccCChhHHHHHH-HHHHCCC---eEEEEecCC-CCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICR-EALDRGL---TVASLSRSG-RSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~-~Ll~~g~---~V~~l~r~~-~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      .+++|.|.||||++|..|++ .|.++.+   ++..+.-+. .+...........+  .|..+++.    ++++|+||.|.
T Consensus         3 ~~~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~v--~~~~~~~~----~~~vDvvf~a~   76 (377)
T 3uw3_A            3 GSMNVGLVGWRGMVGSVLMQRMQEEGDFDLIEPVFFSTSNAGGKAPSFAKNETTL--KDATSIDD----LKKCDVIITCQ   76 (377)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSCTTSBCCTTCCSCCBC--EETTCHHH----HHTCSEEEECS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhhCCCCceEEEEEechhcCCCHHHcCCCceEE--EeCCChhH----hcCCCEEEECC
Confidence            35699999999999999999 6666663   665554322 12111111111112  23333333    36899999998


Q ss_pred             ccCCCCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          130 GGFGSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       130 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      +..            ....++..+.+.|++ ++|=.|+
T Consensus        77 ~~~------------~s~~~~~~~~~~G~k~~VID~ss  102 (377)
T 3uw3_A           77 GGD------------YTNDVFPKLRAAGWNGYWIDAAS  102 (377)
T ss_dssp             CHH------------HHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ChH------------HHHHHHHHHHHCCCCEEEEeCCc
Confidence            751            122445555677774 5554444

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.39  E-value=0.0011  Score=52.97  Aligned_cols=100  Identities=16%  Similarity=0.179  Sum_probs=62.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------cc--CCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------DS--WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      |+|.|+|+ |.+|..++..|+..|+  +|+++++++.....      ..  ......+.. +  +.    +.++++|+||
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~-~--~~----~a~~~aDvVI   72 (304)
T 2v6b_A            1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWH-G--GH----SELADAQVVI   72 (304)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEE-E--CG----GGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEE-C--CH----HHhCCCCEEE
Confidence            58999998 9999999999999998  99999987532100      00  011222222 1  22    3578999999


Q ss_pred             EccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          127 SCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       127 ~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                      .+++....    ..+....|......+++.+.+.....++.+
T Consensus        73 i~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~  114 (304)
T 2v6b_A           73 LTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLV  114 (304)
T ss_dssp             ECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEE
T ss_pred             EcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEE
Confidence            99975332    234456677777777887777654444433

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.39  E-value=0.0017  Score=52.33  Aligned_cols=103  Identities=14%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc------cc---CCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------DS---WANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~------~~---~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      +++|.|+|+ |.+|..++..|+..|+ +|+++++++.....      ..   ......+...  .|   + ++++++|+|
T Consensus         4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t--~d---~-~al~~aD~V   76 (322)
T 1t2d_A            4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGS--NT---Y-DDLAGADVV   76 (322)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEE--CC---G-GGGTTCSEE
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEEC--CC---H-HHhCCCCEE
Confidence            469999998 9999999999999998 98888887643110      00   0111111110  12   3 457899999


Q ss_pred             EEccccCCCC---------ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          126 ISCVGGFGSN---------SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~~---------~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |.++|....+         ......|..-...+++.+.+...+ .++.+|
T Consensus        77 i~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  126 (322)
T 1t2d_A           77 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  126 (322)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999854322         223444555666677777666544 344443

>3pzr_A Aspartate-semialdehyde dehydrogenase; NADP, oxidoreductase-oxidoreductase inhibitor complex; HET: NAP; 1.75A {Vibrio cholerae} PDB: 1mc4_A 1mb4_A* 3q0e_A

Probab=97.39  E-value=0.0021  Score=52.67  Aligned_cols=92  Identities=21%  Similarity=0.275  Sum_probs=52.9

Q ss_pred             CeEEEEccCChhHHHHHH-HHHHCCC---eEEEEe-cCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICR-EALDRGL---TVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~-~Ll~~g~---~V~~l~-r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ++|.|.||||++|..+++ .|.++.+   ++..+. |+..+...........+.  |..+++.    +.++|+||.|.+.
T Consensus         1 ~~VaIvGATG~vG~ellr~lL~~hp~~~~~l~~~ss~~aG~~~~~~~~~~~~~~--~~~~~~~----~~~~Dvvf~a~~~   74 (370)
T 3pzr_A            1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLH--DAFDIES----LKQLDAVITCQGG   74 (370)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCCSSSCCCBCE--ETTCHHH----HTTCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCCceEEEEEeccccCcCHHHhCCCceEEE--ecCChhH----hccCCEEEECCCh
Confidence            589999999999999999 6666663   655554 332222111111112221  3333332    4789999999875


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                      .            .....+..+.+.|.+ ++|=.|+
T Consensus        75 ~------------~s~~~~~~~~~~G~k~~VID~ss   98 (370)
T 3pzr_A           75 S------------YTEKVYPALRQAGWKGYWIDAAS   98 (370)
T ss_dssp             H------------HHHHHHHHHHHTTCCCEEEECSS
T ss_pred             H------------HHHHHHHHHHHCCCCEEEEeCCc
Confidence            2            122345555667764 4554444

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.39  E-value=0.00091  Score=53.78  Aligned_cols=103  Identities=13%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc--cCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD--SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      +.+||.|+|+ |.+|..++-.|+..+.  ++.+++++.++..      ..  ....++++.. |  +    .++++++|+
T Consensus         4 ~~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~-~--~----~~a~~~aDv   75 (318)
T 1ez4_A            4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYS-G--E----YSDCKDADL   75 (318)
T ss_dssp             TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEE-C--C----GGGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCCE
Confidence            3479999998 9999999999998876  8999998643211      00  0112333332 2  2    345789999


Q ss_pred             eEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       125 vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      ||..+|....+    .+.+..|......+++.+.+.+.. .++.+|
T Consensus        76 Vii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  121 (318)
T 1ez4_A           76 VVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (318)
T ss_dssp             EEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            99999864322    345667777788888888887655 444443

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=97.35  E-value=0.00075  Score=55.96  Aligned_cols=71  Identities=20%  Similarity=0.230  Sum_probs=55.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ..+++|+|.|+ |.+|+.+++.+.+.|++|++++ .+..... ........+..|+.|.+.+.++.+.+|+++.
T Consensus        22 m~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~-~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           22 WNSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAK-QISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTG-GGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHH-HhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            34679999998 8999999999999999999999 5433211 1122234677899999999999999998864

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=97.35  E-value=3.6e-05  Score=66.13  Aligned_cols=71  Identities=17%  Similarity=0.242  Sum_probs=43.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++++++|||| |++|++++..|++.|++|++++|+..+...  ......  ++  ++.|.+.+  ....+|++|||+|.
T Consensus       362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a~~la~~~~~~--~~--~~~dl~~~--~~~~~DilVN~agv  434 (523)
T 2o7s_A          362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGK--AL--SLTDLDNY--HPEDGMVLANTTSM  434 (523)
T ss_dssp             ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHHHHHHHHTTC---CE--ETTTTTTC----CCSEEEEECSST
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCc--ee--eHHHhhhc--cccCceEEEECCCC
Confidence            45679999999 799999999999999999999997543111  111111  11  22221111  12358999999985

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.34  E-value=5.7e-05  Score=59.45  Aligned_cols=72  Identities=17%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCC--CceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~--~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      ..++++++|+|+ |++|++++..|++.|++|++.+|+.++...  ....  ..+..  .|+   +++.+  .++|+||++
T Consensus       116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~--~~~---~~~~~--~~~DivIn~  187 (272)
T 1p77_A          116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQA--VSM---DSIPL--QTYDLVINA  187 (272)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEE--EEG---GGCCC--SCCSEEEEC
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEE--eeH---HHhcc--CCCCEEEEC
Confidence            346789999998 899999999999999999999998643211  0000  12222  232   21110  379999999


Q ss_pred             cccC
Q 028890          129 VGGF  132 (202)
Q Consensus       129 a~~~  132 (202)
                      .+..
T Consensus       188 t~~~  191 (272)
T 1p77_A          188 TSAG  191 (272)
T ss_dssp             CCC-
T ss_pred             CCCC
Confidence            9853

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=97.34  E-value=0.00082  Score=52.05  Aligned_cols=123  Identities=16%  Similarity=0.092  Sum_probs=71.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-----CccEeEEccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-----GVTAVISCVG  130 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-----~~d~vi~~a~  130 (202)
                      ++|+|.|++|.+|+.+++.+.+. ++++.+........ ......+.. +..|++.++...+.+.     ++++|+-..|
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl-~~~~~~~~D-vvIDfT~p~a~~~~~~~a~~~g~~~VigTTG   78 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPL-SLLTDGNTE-VVIDFTHPDVVMGNLEFLIDNGIHAVVGTTG   78 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCT-HHHHHTTCC-EEEECSCTTTHHHHHHHHHHTTCEEEECCCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCH-HHHhccCCc-EEEEccChHHHHHHHHHHHHcCCCEEEcCCC
Confidence            48999999999999999999876 89988665433221 111111333 5567887776554332     5778776665


Q ss_pred             cCCCCccchhhhHHHHHHHHHHHHHc-CCCEEEEEeccccCc------------------------CCcCCcchHHHHHH
Q 028890          131 GFGSNSYMYKINGTANINAIRAASEK-GVKRFVYISAADFGV------------------------ANYLLQGYYEGKVL  185 (202)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS~~~~~------------------------~~~~~~~Y~~sK~~  185 (202)
                      ...   .       ....+.+++++. ++ .+++.+....|.                        ......|-|.++..
T Consensus        79 ~~~---e-------~~~~l~~aa~~~~~~-~vv~a~N~siGv~ll~~l~~~aa~~~~dieIiE~HH~~K~DaPSGTA~~l  147 (245)
T 1p9l_A           79 FTA---E-------RFQQVESWLVAKPNT-SVLIAPNFAIGAVLSMHFAKQAARFFDSAEVIELHHPHKADAPSGTAART  147 (245)
T ss_dssp             CCH---H-------HHHHHHHHHHTSTTC-EEEECSCCCHHHHHHHHHHHHHGGGCSEEEEEEEECTTCCSSSCHHHHHH
T ss_pred             CCH---H-------HHHHHHHHHHhCCCC-CEEEECCccHHHHHHHHHHHHHHhhcCCEEEEECcccCCCCCCCHHHHHH
Confidence            311   1       112334455544 43 566665532220                        11123456888888


Q ss_pred             HHHHHHH
Q 028890          186 SSDVAAC  192 (202)
Q Consensus       186 ~E~~~~~  192 (202)
                      +|.+...
T Consensus       148 ae~i~~~  154 (245)
T 1p9l_A          148 AKLIAEA  154 (245)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            8887654

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.34  E-value=0.0016  Score=52.24  Aligned_cols=104  Identities=13%  Similarity=0.245  Sum_probs=66.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------c---cCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~---~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      ++++|.|+|+ |.+|..++..|+..|.  +|+++++++.....      .   .....+.+.. |  +    .+.++++|
T Consensus         5 ~~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~-~--~----~~al~~aD   76 (316)
T 1ldn_A            5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWH-G--D----YDDCRDAD   76 (316)
T ss_dssp             TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEE-C--C----GGGTTTCS
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEc-C--c----HHHhCCCC
Confidence            4579999998 9999999999988774  89999987532110      0   0111233332 1  2    24578999


Q ss_pred             EeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +||.+++....+    ...+..|..-...+++.+.+.....++++-|
T Consensus        77 vViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t  123 (316)
T 1ldn_A           77 LVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (316)
T ss_dssp             EEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             EEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence            999999864322    2345556666667777777766554444433

>3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima}

Probab=97.32  E-value=0.0012  Score=54.07  Aligned_cols=69  Identities=22%  Similarity=0.283  Sum_probs=53.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      |++|+|+|+ |.+|+.+++.+.+.|++|++++.++...... ...  .++..|+.|.+.+.++.+++|.|+..
T Consensus         1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~~~-~~~--~~~~~~~~d~~~l~~~~~~~d~v~~~   69 (380)
T 3ax6_A            1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPAGQ-VAD--EQIVAGFFDSERIEDLVKGSDVTTYD   69 (380)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTGG-GSS--EEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchhh-hCc--eEEECCCCCHHHHHHHHhcCCEEEec
Confidence            478999997 8999999999999999999988754332111 111  35677899999998888899998753

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=97.32  E-value=0.00012  Score=59.83  Aligned_cols=71  Identities=23%  Similarity=0.237  Sum_probs=49.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC---CCcccccCCCceeEEEccCCC--HhhHHHHhcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG---RSSLRDSWANNVIWHQGNLLS--SDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~---~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~~~d~vi~~a~  130 (202)
                      +++|+|+|+ |.+|..+++.+...|++|+++++++   .+. .....-++..+  | .+  .+.+.+.-.++|++|.++|
T Consensus       181 g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~~ga~~v--~-~~~~~~~~~~~~~~~d~vid~~g  255 (366)
T 2cdc_A          181 CRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEETKTNYY--N-SSNGYDKLKDSVGKFDVIIDATG  255 (366)
T ss_dssp             TCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHHHTCEEE--E-CTTCSHHHHHHHCCEEEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHHhCCcee--c-hHHHHHHHHHhCCCCCEEEECCC
Confidence            789999999 9999999999998999999999876   331 11111133444  5 43  1233331247999999998


Q ss_pred             c
Q 028890          131 G  131 (202)
Q Consensus       131 ~  131 (202)
                      .
T Consensus       256 ~  256 (366)
T 2cdc_A          256 A  256 (366)
T ss_dssp             C
T ss_pred             C
Confidence            5

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=97.31  E-value=0.00062  Score=56.84  Aligned_cols=70  Identities=23%  Similarity=0.204  Sum_probs=54.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ..+++|+|.|+ |.+|+.+++.+.+.|++|++++.++.......   .-.++..|+.|.+.+.++.+++|+|+.
T Consensus        33 ~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~---ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           33 LPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPAGAV---ADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHHHHH---SSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCchhhh---CCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            35679999997 89999999999999999999986544321111   113566899999999999989999984

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.31  E-value=0.0013  Score=52.86  Aligned_cols=104  Identities=11%  Similarity=0.134  Sum_probs=68.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------c---cCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D---SWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~---~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      +++||.|+|+ |.+|..++..|+.+|.  +|.++++++.+...      .   .....+.+.. |  +    .++++++|
T Consensus         5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~-~--~----~~a~~~aD   76 (317)
T 3d0o_A            5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKA-G--E----YSDCHDAD   76 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEE-C--C----GGGGTTCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEe-C--C----HHHhCCCC
Confidence            3469999999 9999999999998884  88888876432100      0   1112233332 2  2    34578999


Q ss_pred             EeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +||.++|....+    ......|..-...+++.+.+...+-++.+.|
T Consensus        77 vVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  123 (317)
T 3d0o_A           77 LVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT  123 (317)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence            999999864432    2334666677777788887776655555544

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.31  E-value=0.0011  Score=53.54  Aligned_cols=104  Identities=12%  Similarity=0.143  Sum_probs=67.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------c--cCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~--~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      .+++||.|+|+ |.+|..++-.|+..+.  ++.+++++..+...      .  ....++.+.. |  +    .++++++|
T Consensus         7 ~~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~-~--~----~~a~~~aD   78 (326)
T 2zqz_A            7 KDHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYS-A--E----YSDAKDAD   78 (326)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGGGCS
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEE-C--C----HHHhCCCC
Confidence            35579999998 9999999999988875  89999986432100      0  0112333332 2  2    34578999


Q ss_pred             EeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       124 ~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      +||..+|....+    ......|......+++.+.+.... .++.+|
T Consensus        79 vVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  125 (326)
T 2zqz_A           79 LVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA  125 (326)
T ss_dssp             EEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             EEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence            999999864322    234556777777778888777654 455443

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.30  E-value=0.0011  Score=55.80  Aligned_cols=75  Identities=16%  Similarity=0.143  Sum_probs=48.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccC------CCcee-EE-----EccCCCHhhHHHHhcCccE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSW------ANNVI-WH-----QGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~------~~~~~-~~-----~~D~~~~~~~~~~~~~~d~  124 (202)
                      |+|.|.|+ |++|..++..|.+.|++|++.+|++.+......      .+++. .+     ...+.-..++.++++++|+
T Consensus         3 mkI~VIG~-G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGI-GYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADI   81 (450)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCE
Confidence            68999997 999999999999999999999998643111000      00000 00     0001111235567788999


Q ss_pred             eEEccccC
Q 028890          125 VISCVGGF  132 (202)
Q Consensus       125 vi~~a~~~  132 (202)
                      ||.+.+..
T Consensus        82 ViiaVptp   89 (450)
T 3gg2_A           82 IFIAVGTP   89 (450)
T ss_dssp             EEECCCCC
T ss_pred             EEEEcCCC
Confidence            99998754

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=97.29  E-value=0.00023  Score=57.55  Aligned_cols=74  Identities=23%  Similarity=0.188  Sum_probs=50.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~d~vi~~a~~  131 (202)
                      .+++|+|+|+ |.+|..+++.+...|++|+++++++.+..... .-+... ..|..+.+   .+.++..++|++|.++|.
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~-~~d~~~~~~~~~~~~~~~~~d~vid~~g~  240 (339)
T 1rjw_A          164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK-ELGADL-VVNPLKEDAAKFMKEKVGGVHAAVVTAVS  240 (339)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCSE-EECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-HCCCCE-EecCCCccHHHHHHHHhCCCCEEEECCCC
Confidence            5679999999 88999999999999999999998754321111 112222 24665432   333333579999999984

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=97.29  E-value=0.00036  Score=56.86  Aligned_cols=75  Identities=21%  Similarity=0.035  Sum_probs=53.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++.+.......-+... ..|..+.+.+.++..++|+||.++|.
T Consensus       180 ~g~~VlV~Ga-G~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~-vi~~~~~~~~~~~~~g~D~vid~~g~  254 (357)
T 2cf5_A          180 PGLRGGILGL-GGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADD-YVIGSDQAKMSELADSLDYVIDTVPV  254 (357)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSC-EEETTCHHHHHHSTTTEEEEEECCCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCce-eeccccHHHHHHhcCCCCEEEECCCC
Confidence            5679999996 999999999888889999999987654211110112221 13555666677766789999999985

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=97.28  E-value=0.0024  Score=55.18  Aligned_cols=69  Identities=14%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~  131 (202)
                      ++++|.|+ |.+|.++++.|.+.|++|+++++++......     ..++.+|.+|++.++++ ++++|.+|-+.+.
T Consensus       349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~-----~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~  418 (565)
T 4gx0_A          349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPVCND-----HVVVYGDATVGQTLRQAGIDRASGIIVTTND  418 (565)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSSCCS-----SCEEESCSSSSTHHHHHTTTSCSEEEECCSC
T ss_pred             CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHHhhc-----CCEEEeCCCCHHHHHhcCccccCEEEEECCC
Confidence            78999998 9999999999999999999999887653221     18999999999988764 4568999887753

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.27  E-value=0.00016  Score=57.16  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=33.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      +++|.|.|++|.+|..+++.|.+.|++|++.+|++.
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~   46 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPE   46 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            579999999999999999999999999999988754

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=97.24  E-value=0.0012  Score=52.13  Aligned_cols=57  Identities=16%  Similarity=0.222  Sum_probs=48.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++++|.|+++.+|+.++..|+..|+.|+++.|..                      ..+.+.++++|+||...|.
T Consensus       157 ~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t----------------------~~L~~~~~~ADIVI~Avg~  213 (285)
T 3p2o_A          157 DLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT----------------------KDLSLYTRQADLIIVAAGC  213 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------SCHHHHHTTCSEEEECSSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc----------------------hhHHHHhhcCCEEEECCCC
Confidence            45789999999999999999999999999999887642                      1256778889999999874

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=97.24  E-value=0.00018  Score=57.78  Aligned_cols=75  Identities=24%  Similarity=0.217  Sum_probs=53.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+.+|+|+||+|.+|...++.+...|++|+++.+.........  -+... ..|..+.+.+.+.+.++|++|.+.|.
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~--lGa~~-~i~~~~~~~~~~~~~g~D~v~d~~g~  225 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKA--LGAEQ-CINYHEEDFLLAISTPVDAVIDLVGG  225 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHH--HTCSE-EEETTTSCHHHHCCSCEEEEEESSCH
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHH--cCCCE-EEeCCCcchhhhhccCCCEEEECCCc
Confidence            35779999999999999999999999999998875432111111  12221 23555555466667899999999884

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.24  E-value=0.0025  Score=52.36  Aligned_cols=70  Identities=17%  Similarity=0.184  Sum_probs=54.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ..+++|+|.|+ |.+|+.+++.+.+.|++|++++.++......   ..-..+..|+.|.+.+.++.+.+|+|..
T Consensus        12 ~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~---~ad~~~~~~~~d~~~l~~~~~~~dvI~~   81 (389)
T 3q2o_A           12 LPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCAQ---VADIEIVASYDDLKAIQHLAEISDVVTY   81 (389)
T ss_dssp             CTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTTT---TCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchHH---hCCceEecCcCCHHHHHHHHHhCCEeee
Confidence            36789999997 8899999999999999999998765432111   1113456789999999999999998854

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.22  E-value=0.0029  Score=50.65  Aligned_cols=103  Identities=17%  Similarity=0.153  Sum_probs=63.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccc------c-----CCCceeEEEccCCCHhhHHHHhcCc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD------S-----WANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~------~-----~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      ++++|.|+|+ |.+|..++..|+.+|+ +|++.++++......      .     ...++... .   |   + +.++++
T Consensus         3 ~~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t-~---d---~-~a~~~a   73 (317)
T 2ewd_A            3 ERRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGT-D---D---Y-ADISGS   73 (317)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEE-S---C---G-GGGTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEEC-C---C---H-HHhCCC
Confidence            3468999998 9999999999999998 999999876432110      0     01112111 1   2   2 356799


Q ss_pred             cEeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCE-EEEEec
Q 028890          123 TAVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKR-FVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~-~v~~SS  166 (202)
                      |+||.+++....+    .+....|......+++.+.+..... ++.+|.
T Consensus        74 DiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN  122 (317)
T 2ewd_A           74 DVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITN  122 (317)
T ss_dssp             SEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             CEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            9999999854322    2222344555556666666654343 444443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.21  E-value=0.0044  Score=50.03  Aligned_cols=103  Identities=14%  Similarity=0.028  Sum_probs=70.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc--cCCCceeEE-EccCCCHhhHHHHhcCcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD--SWANNVIWH-QGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~--~~~~~~~~~-~~D~~~~~~~~~~~~~~d  123 (202)
                      ..++|.|+|+ |.+|..++..|+..|.  +|.+++++++...      ..  .......+. ..|+   +    .++++|
T Consensus        20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~---~----~~~daD   91 (330)
T 3ldh_A           20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDY---S----VSAGSK   91 (330)
T ss_dssp             CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSS---C----SCSSCS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCH---H----HhCCCC
Confidence            4579999998 9999999999999986  8999998653210      00  111112222 2232   2    268999


Q ss_pred             EeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCE-EEEEe
Q 028890          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKR-FVYIS  165 (202)
Q Consensus       124 ~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~-~v~~S  165 (202)
                      +||-+||....    ..+.+..|..-...+++.+.+.+..- ++.+|
T Consensus        92 iVIitaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt  138 (330)
T 3ldh_A           92 LVVITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP  138 (330)
T ss_dssp             EEEECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence            99999996432    34567778888888888888876554 55444

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.21  E-value=0.00076  Score=55.64  Aligned_cols=73  Identities=15%  Similarity=0.115  Sum_probs=50.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCC----------------------CH
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL----------------------SS  112 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~----------------------~~  112 (202)
                      .+++|+|+|+ |.+|..+++.+...|++|++.+|++.+...... -+.+++..|..                      ..
T Consensus       171 ~g~~V~ViGa-G~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~  248 (384)
T 1l7d_A          171 PPARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQA  248 (384)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TTCEECCC-----------------------CCHH
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeecccccccccccccchhhcCHHHHhhhH
Confidence            5789999997 999999999999999999999988654211111 12222211221                      12


Q ss_pred             hhHHHHhcCccEeEEcc
Q 028890          113 DSWKEALDGVTAVISCV  129 (202)
Q Consensus       113 ~~~~~~~~~~d~vi~~a  129 (202)
                      +.+.+.+.++|+||+++
T Consensus       249 ~~l~~~~~~aDvVi~~~  265 (384)
T 1l7d_A          249 EAVLKELVKTDIAITTA  265 (384)
T ss_dssp             HHHHHHHTTCSEEEECC
T ss_pred             HHHHHHhCCCCEEEECC
Confidence            34777888999999988

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.20  E-value=0.00037  Score=54.27  Aligned_cols=68  Identities=15%  Similarity=0.158  Sum_probs=49.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .++ +++|.|+ |+.|++++..|++.|. +|++.+|+.++....  ...+...     ..+++.+.+.++|+||++..
T Consensus       107 ~~~-~vliiGa-Gg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~l--a~~~~~~-----~~~~~~~~~~~aDiVInatp  175 (253)
T 3u62_A          107 VKE-PVVVVGA-GGAARAVIYALLQMGVKDIWVVNRTIERAKAL--DFPVKIF-----SLDQLDEVVKKAKSLFNTTS  175 (253)
T ss_dssp             CCS-SEEEECC-SHHHHHHHHHHHHTTCCCEEEEESCHHHHHTC--CSSCEEE-----EGGGHHHHHHTCSEEEECSS
T ss_pred             CCC-eEEEECc-HHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHH--HHHcccC-----CHHHHHhhhcCCCEEEECCC
Confidence            356 9999997 9999999999999998 999999986542111  1222222     23456677789999999874

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.20  E-value=0.0039  Score=50.27  Aligned_cols=102  Identities=18%  Similarity=0.182  Sum_probs=65.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc------cc-----CCCceeEEEccCCCHhhHHHHhcCc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR------DS-----WANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~------~~-----~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      ++++|.|+|| |.+|..++..|+..|+ +|++.+++++....      ..     ...++... .|      + ++++++
T Consensus        13 ~~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t-~d------~-~al~~a   83 (328)
T 2hjr_A           13 MRKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGE-NN------Y-EYLQNS   83 (328)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEE-SC------G-GGGTTC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEEC-CC------H-HHHCCC
Confidence            3469999998 9999999999999998 99999988643211      00     01122211 22      3 457899


Q ss_pred             cEeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEE-EEEe
Q 028890          123 TAVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRF-VYIS  165 (202)
Q Consensus       123 d~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~-v~~S  165 (202)
                      |+||-++|....+    .+....|..-...+++.+.+...+.+ +.+|
T Consensus        84 D~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t  131 (328)
T 2hjr_A           84 DVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICIT  131 (328)
T ss_dssp             SEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9999999754321    23334466666667777766554444 4443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.18  E-value=0.0022  Score=51.47  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=52.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...++++.|.|. |.||+.+++.|...|++|++.+|++...      ..+....    ..++++++++++|+|+.+...
T Consensus       136 ~l~g~tvGIiG~-G~IG~~vA~~l~~~G~~V~~~dr~~~~~------~~~~~~~----~~~~l~ell~~aDiV~l~~Pl  203 (315)
T 3pp8_A          136 TREEFSVGIMGA-GVLGAKVAESLQAWGFPLRCWSRSRKSW------PGVESYV----GREELRAFLNQTRVLINLLPN  203 (315)
T ss_dssp             CSTTCCEEEECC-SHHHHHHHHHHHTTTCCEEEEESSCCCC------TTCEEEE----SHHHHHHHHHTCSEEEECCCC
T ss_pred             CcCCCEEEEEee-CHHHHHHHHHHHHCCCEEEEEcCCchhh------hhhhhhc----ccCCHHHHHhhCCEEEEecCC
Confidence            457899999997 9999999999999999999999876532      1222211    236788999999999988753

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.18  E-value=0.00014  Score=57.80  Aligned_cols=35  Identities=20%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      +|+|.|.|+ |.+|..++..|.+.|++|++++|++.
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~r~~~   37 (316)
T 2ew2_A            3 AMKIAIAGA-GAMGSRLGIMLHQGGNDVTLIDQWPA   37 (316)
T ss_dssp             -CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCeEEEECc-CHHHHHHHHHHHhCCCcEEEEECCHH
Confidence            469999997 99999999999999999999998753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=97.16  E-value=0.00035  Score=56.66  Aligned_cols=75  Identities=20%  Similarity=0.136  Sum_probs=49.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC--HhhHHHHh-cCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEAL-DGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~-~~~d~vi~~a~~  131 (202)
                      .+.+|+|+||+|.+|...++.+...|++|+++++++.+..... .-+...+ .|..+  .+.+.+.- .++|++|.|+|.
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v-i~~~~~~~~~~~~~~~~g~Dvv~d~~g~  227 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK-KMGADIV-LNHKESLLNQFKTQGIELVDYVFCTFNT  227 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH-HHTCSEE-ECTTSCHHHHHHHHTCCCEEEEEESSCH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH-hcCCcEE-EECCccHHHHHHHhCCCCccEEEECCCc
Confidence            5789999999999999999999999999999998654311100 0112211 23322  22333331 258999999874

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.16  E-value=0.00031  Score=56.21  Aligned_cols=39  Identities=21%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      ...+++|.|.|. |.+|..+++.|++.|++|++.+|++.+
T Consensus        18 ~~~m~~I~iIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~   56 (310)
T 3doj_A           18 GSHMMEVGFLGL-GIMGKAMSMNLLKNGFKVTVWNRTLSK   56 (310)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             cccCCEEEEECc-cHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            346789999996 999999999999999999999998654

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=97.16  E-value=0.00031  Score=58.97  Aligned_cols=39  Identities=18%  Similarity=0.233  Sum_probs=34.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      ..+++|+|+||+|.||...++.+...|++|+++++++.+
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~  257 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQK  257 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            457899999999999999999999999999999876543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=97.16  E-value=0.00039  Score=56.64  Aligned_cols=74  Identities=20%  Similarity=0.165  Sum_probs=50.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH-hhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-DSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++.+...... -+...+ .|..+. +..+++..++|+||.+.|.
T Consensus       179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~-lGa~~v-~~~~~~~~~~~~~~~~~D~vid~~g~  253 (360)
T 1piw_A          179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAMK-MGADHY-IATLEEGDWGEKYFDTFDLIVVCASS  253 (360)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH-HTCSEE-EEGGGTSCHHHHSCSCEEEEEECCSC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCCCEE-EcCcCchHHHHHhhcCCCEEEECCCC
Confidence            5679999999 999999999888889999999987655211110 112211 244443 3334443579999999986

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=97.15  E-value=0.0025  Score=51.02  Aligned_cols=101  Identities=18%  Similarity=0.170  Sum_probs=66.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccc------c--cCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~------~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +||.|+|+ |.+|..++-.|+..+  .++.++++++++...      .  ....++.+.. |  +    .++++++|+||
T Consensus         1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~-~--~----~~a~~~aD~Vi   72 (310)
T 2xxj_A            1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWA-G--S----YGDLEGARAVV   72 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEE-C--C----GGGGTTEEEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEE-C--C----HHHhCCCCEEE
Confidence            58999998 999999999999887  589999987532110      0  0112333332 2  2    33578999999


Q ss_pred             EccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       127 ~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      ..+|....+    ......|......+++.+.+.+.+ .++.+|
T Consensus        73 i~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t  116 (310)
T 2xxj_A           73 LAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT  116 (310)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             ECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence            999864432    234456677777778888777655 444443

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=97.13  E-value=0.00061  Score=55.80  Aligned_cols=74  Identities=20%  Similarity=0.150  Sum_probs=52.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++.+..... .-+... ..|..+.+.++++..++|+||.+.|.
T Consensus       194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~-~lGa~~-vi~~~~~~~~~~~~~g~Dvvid~~g~  267 (369)
T 1uuf_A          194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK-ALGADE-VVNSRNADEMAAHLKSFDFILNTVAA  267 (369)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH-HHTCSE-EEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCcE-EeccccHHHHHHhhcCCCEEEECCCC
Confidence            5679999998 89999999998889999999998765421110 012221 23566666555555689999999985

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=97.12  E-value=0.00031  Score=56.97  Aligned_cols=96  Identities=18%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHhc--CccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALD--GVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~--~~d~vi~~  128 (202)
                      .+.+|+|+|+ |.+|..+++.+...|+ +|+++++++.+.... ..-+...+ .|..+++   .+.++..  ++|+||.+
T Consensus       167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~-~~~Ga~~~-~~~~~~~~~~~v~~~~~g~g~D~vid~  243 (348)
T 2d8a_A          167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSDFRRELA-KKVGADYV-INPFEEDVVKEVMDITDGNGVDVFLEF  243 (348)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHHHH-HHHTCSEE-ECTTTSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH-HHhCCCEE-ECCCCcCHHHHHHHHcCCCCCCEEEEC
Confidence            6779999999 9999999999999999 999999875431111 01122211 3444432   3333332  69999999


Q ss_pred             cccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          129 VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       129 a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +|..           ......++.++..  ++++.+++
T Consensus       244 ~g~~-----------~~~~~~~~~l~~~--G~iv~~g~  268 (348)
T 2d8a_A          244 SGAP-----------KALEQGLQAVTPA--GRVSLLGL  268 (348)
T ss_dssp             SCCH-----------HHHHHHHHHEEEE--EEEEECCC
T ss_pred             CCCH-----------HHHHHHHHHHhcC--CEEEEEcc
Confidence            9841           1112234444333  37888876

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.12  E-value=0.00024  Score=59.10  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=51.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..+++|+|.|+ |.+|+.+++.|...|+ +|++.+|+..+.......-+...  .   +.+++.+.+.++|+||.+.+..
T Consensus       165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~--~---~~~~l~~~l~~aDvVi~at~~~  238 (404)
T 1gpj_A          165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEA--V---RFDELVDHLARSDVVVSATAAP  238 (404)
T ss_dssp             CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEE--C---CGGGHHHHHHTCSEEEECCSSS
T ss_pred             ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCce--e---cHHhHHHHhcCCCEEEEccCCC
Confidence            46789999998 9999999999999998 99999987643211000002222  1   2345677778999999998643

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=97.12  E-value=0.00026  Score=57.38  Aligned_cols=73  Identities=26%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH---hhHHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~--~~d~vi~~  128 (202)
                      ..+.+|+|+||+|.+|...++.+...|++|+++ +++.+. .....-+...  .| .+.   +.+.+...  ++|++|.|
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~-~~~~~lGa~~--i~-~~~~~~~~~~~~~~~~g~D~vid~  223 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDL-EYVRDLGATP--ID-ASREPEDYAAEHTAGQGFDLVYDT  223 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHH-HHHHHHTSEE--EE-TTSCHHHHHHHHHTTSCEEEEEES
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHH-HHHHHcCCCE--ec-cCCCHHHHHHHHhcCCCceEEEEC
Confidence            357899999999999999999999999999988 554331 1111112333  33 222   23333333  69999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      +|.
T Consensus       224 ~g~  226 (343)
T 3gaz_A          224 LGG  226 (343)
T ss_dssp             SCT
T ss_pred             CCc
Confidence            984

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.12  E-value=0.0027  Score=50.41  Aligned_cols=99  Identities=17%  Similarity=0.187  Sum_probs=63.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc---------------------ccCCC--ceeEEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR---------------------DSWAN--NVIWHQG  107 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~---------------------~~~~~--~~~~~~~  107 (202)
                      .+..+|+|.|+ |++|+++++.|...|. ++++++.+.-..  ..                     ...++  +++.+..
T Consensus        34 L~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~~iNP~v~v~~~~~  112 (292)
T 3h8v_A           34 IRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNY  112 (292)
T ss_dssp             GGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHHHHCTTSEEEEECC
T ss_pred             HhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHHhhCCCcEEEEecc
Confidence            45679999998 9999999999999996 888888764210  00                     00123  3455556


Q ss_pred             cCCCHhhHHHHh-----------cCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEe
Q 028890          108 NLLSSDSWKEAL-----------DGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (202)
Q Consensus       108 D~~~~~~~~~~~-----------~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~S  165 (202)
                      ++.+.+.+++++           +++|+||.+...           ...-..+-++|.+.++ .+|+.+
T Consensus       113 ~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~Dn-----------~~~R~~in~~c~~~~~-Pli~~g  169 (292)
T 3h8v_A          113 NITTVENFQHFMDRISNGGLEEGKPVDLVLSCVDN-----------FEARMTINTACNELGQ-TWMESG  169 (292)
T ss_dssp             CTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCSS-----------HHHHHHHHHHHHHHTC-CEEEEE
T ss_pred             cCCcHHHHHHHhhhhcccccccCCCCCEEEECCcc-----------hhhhhHHHHHHHHhCC-CEEEee
Confidence            676656666654           578999877632           1222345667777774 555544

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.12  E-value=0.00068  Score=53.96  Aligned_cols=72  Identities=22%  Similarity=0.223  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++++|.|+ |.+|+.+++.|...|++|++.+|+..+... ....++..+     +.+++.++++++|+||.+...
T Consensus       154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~-~~~~g~~~~-----~~~~l~~~l~~aDvVi~~~p~  225 (300)
T 2rir_A          154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAHLAR-ITEMGLVPF-----HTDELKEHVKDIDICINTIPS  225 (300)
T ss_dssp             CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHTTCEEE-----EGGGHHHHSTTCSEEEECCSS
T ss_pred             CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHHCCCeEE-----chhhHHHHhhCCCEEEECCCh
Confidence            457889999997 999999999999999999999987643211 001123322     234577888999999998874

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=97.11  E-value=0.0016  Score=51.65  Aligned_cols=58  Identities=19%  Similarity=0.273  Sum_probs=48.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH--HHhcCccEeEEccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK--EALDGVTAVISCVG  130 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~--~~~~~~d~vi~~a~  130 (202)
                      ...+++++|.|+++-+|+.++..|+..|+.|+++.|...                      .+.  +.++++|+||.+.|
T Consensus       162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~----------------------~l~l~~~~~~ADIVI~Avg  219 (300)
T 4a26_A          162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS----------------------TEDMIDYLRTADIVIAAMG  219 (300)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC----------------------HHHHHHHHHTCSEEEECSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC----------------------CchhhhhhccCCEEEECCC
Confidence            457899999999889999999999999999999887431                      233  77888999999988


Q ss_pred             cC
Q 028890          131 GF  132 (202)
Q Consensus       131 ~~  132 (202)
                      ..
T Consensus       220 ~p  221 (300)
T 4a26_A          220 QP  221 (300)
T ss_dssp             CT
T ss_pred             CC
Confidence            53

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.11  E-value=0.00064  Score=53.92  Aligned_cols=72  Identities=19%  Similarity=0.123  Sum_probs=52.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++++|.|+ |.+|+.+++.|...|++|++.+|+..+.... ...++..+     +.+++.++++++|+|+.+...
T Consensus       152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~-~~~g~~~~-----~~~~l~~~l~~aDvVi~~~p~  223 (293)
T 3d4o_A          152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARESDLLARI-AEMGMEPF-----HISKAAQELRDVDVCINTIPA  223 (293)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTSEEE-----EGGGHHHHTTTCSEEEECCSS
T ss_pred             CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCHHHHHHH-HHCCCeec-----ChhhHHHHhcCCCEEEECCCh
Confidence            457889999996 9999999999999999999999875431110 01123332     234577888999999998753

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=97.10  E-value=0.002  Score=50.74  Aligned_cols=57  Identities=21%  Similarity=0.266  Sum_probs=47.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++++|.|+++-+|+.++..|+..|+.|+++.|..                      ..+.+.++++|+||.+.|.
T Consensus       158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t----------------------~~L~~~~~~ADIVI~Avg~  214 (285)
T 3l07_A          158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT----------------------TDLKSHTTKADILIVAVGK  214 (285)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------SSHHHHHTTCSEEEECCCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc----------------------hhHHHhcccCCEEEECCCC
Confidence            45789999999988899999999999999998886542                      1256778899999999874

>3tz6_A Aspartate-semialdehyde dehydrogenase; asadh, ASD, ASA, amino-acid biosynthesis, diaminopimelate biosynthesis, lysine biosynthesis; HET: SO4; 1.95A {Mycobacterium tuberculosis} PDB: 3vos_A* 3kub_A 3llg_A

Probab=97.09  E-value=0.0048  Score=50.08  Aligned_cols=91  Identities=12%  Similarity=0.110  Sum_probs=51.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCC-CcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGR-SSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~-~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++|.|.||||++|..|++.|.++.+   ++..+.-... ..... +.. .....-|+. ++    .++++|+||.|.+.
T Consensus         1 ~~~VaIvGatG~vG~el~~lL~~h~fp~~el~~~~s~~~aG~~~~-~~~-~~~~~~~~~-~~----~~~~~Dvvf~a~~~   73 (344)
T 3tz6_A            1 GLSIGIVGATGQVGQVMRTLLDERDFPASAVRFFASARSQGRKLA-FRG-QEIEVEDAE-TA----DPSGLDIALFSAGS   73 (344)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTSSCEEE-ETT-EEEEEEETT-TS----CCTTCSEEEECSCH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCceEEEEEECcccCCCcee-ecC-CceEEEeCC-HH----HhccCCEEEECCCh
Confidence            36899999999999999999988754   4555542211 11111 111 122222222 12    24689999999874


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .            .....+..+.+.|. ++|-.|+
T Consensus        74 ~------------~s~~~a~~~~~~G~-~vID~Sa   95 (344)
T 3tz6_A           74 A------------MSKVQAPRFAAAGV-TVIDNSS   95 (344)
T ss_dssp             H------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             H------------HHHHHHHHHHhCCC-EEEECCC
Confidence            1            12233444455565 5665555

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.09  E-value=0.0018  Score=54.19  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=31.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |+|.|.|+ |++|..++..|.+.|++|++++|++.+
T Consensus         1 mkI~VIG~-G~vG~~~A~~la~~G~~V~~~d~~~~~   35 (436)
T 1mv8_A            1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTK   35 (436)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47999995 999999999999999999999987543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=97.08  E-value=0.0014  Score=52.61  Aligned_cols=81  Identities=20%  Similarity=0.104  Sum_probs=56.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc--cCCCcee-EEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD--SWANNVI-WHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~--~~~~~~~-~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ...+++++|.|++.-+|+.+++.|+..|.+|++++|+.......  ....... ......++++++.+.+.++|+||.+.
T Consensus       174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAt  253 (320)
T 1edz_A          174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  253 (320)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECC
Confidence            56789999999977889999999999999999998874321110  0011111 11111134577899999999999999


Q ss_pred             ccCC
Q 028890          130 GGFG  133 (202)
Q Consensus       130 ~~~~  133 (202)
                      |..+
T Consensus       254 g~p~  257 (320)
T 1edz_A          254 PSEN  257 (320)
T ss_dssp             CCTT
T ss_pred             CCCc
Confidence            8643

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.08  E-value=0.00035  Score=55.12  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |+|.|.|. |.+|..+++.|.+.|++|++.+|++.+
T Consensus         2 ~~i~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pef_A            2 QKFGFIGL-GIMGSAMAKNLVKAGCSVTIWNRSPEK   36 (287)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSGGG
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            68999996 999999999999999999999998654

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.08  E-value=0.00039  Score=55.86  Aligned_cols=68  Identities=19%  Similarity=0.251  Sum_probs=46.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .++++|.|.|. |.+|..+++.|.+.|++|++.+|++.+... ....++.+       .+++.++++++|+||-+..
T Consensus        29 ~~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~-l~~~g~~~-------~~~~~e~~~~aDvVi~~vp   96 (320)
T 4dll_A           29 PYARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPARAAS-LAALGATI-------HEQARAAARDADIVVSMLE   96 (320)
T ss_dssp             CCCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHHHHHH-HHTTTCEE-------ESSHHHHHTTCSEEEECCS
T ss_pred             cCCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHHHHHH-HHHCCCEe-------eCCHHHHHhcCCEEEEECC
Confidence            35679999987 999999999999999999999988653211 11112221       1234455667777776664

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.07  E-value=0.00087  Score=53.55  Aligned_cols=100  Identities=16%  Similarity=0.146  Sum_probs=63.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcccc---------cCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRD---------SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      |++|.|+| +|.+|..++..|+.+|  ++|++++|++......         .....+.....   |.    +.++++|+
T Consensus         1 m~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---d~----~~~~~aDv   72 (309)
T 1hyh_A            1 ARKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIN---DW----AALADADV   72 (309)
T ss_dssp             CCEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEES---CG----GGGTTCSE
T ss_pred             CCEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeC---CH----HHhCCCCE
Confidence            36899999 5999999999999999  7999999975331100         00112233222   22    35678999


Q ss_pred             eEEccccCCC----C----ccchhhhHHHHHHHHHHHHHcCCCEEEE
Q 028890          125 VISCVGGFGS----N----SYMYKINGTANINAIRAASEKGVKRFVY  163 (202)
Q Consensus       125 vi~~a~~~~~----~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~  163 (202)
                      ||.+++....    +    ......|..-...+++.+.+...+.++.
T Consensus        73 Viiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii  119 (309)
T 1hyh_A           73 VISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLV  119 (309)
T ss_dssp             EEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEE
T ss_pred             EEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEE
Confidence            9999986332    1    2234456666667777776655443433

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.07  E-value=0.00072  Score=51.62  Aligned_cols=72  Identities=13%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc-CCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ..++++|+|.|| |-+|...++.|++.|++|++++.+........ ...+++++..++.+.     .++++|.||-+.+
T Consensus        28 ~L~gk~VLVVGg-G~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~-----dL~~adLVIaAT~  100 (223)
T 3dfz_A           28 DLKGRSVLVVGG-GTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEE-----DLLNVFFIVVATN  100 (223)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGG-----GSSSCSEEEECCC
T ss_pred             EcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHh-----HhCCCCEEEECCC
Confidence            357899999998 99999999999999999999987654322211 234677877766432     3568999986654

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.06  E-value=0.00086  Score=52.64  Aligned_cols=65  Identities=20%  Similarity=0.155  Sum_probs=46.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +++++|.|+ |+.|++++..|.+.|.+|++.+|+.++..... .-++...  ++.+   +    .++|+||++...
T Consensus       118 ~k~vlvlGa-GGaaraia~~L~~~G~~v~V~nRt~~ka~~la-~~~~~~~--~~~~---l----~~~DiVInaTp~  182 (269)
T 3phh_A          118 YQNALILGA-GGSAKALACELKKQGLQVSVLNRSSRGLDFFQ-RLGCDCF--MEPP---K----SAFDLIINATSA  182 (269)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCTTHHHHH-HHTCEEE--SSCC---S----SCCSEEEECCTT
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HCCCeEe--cHHH---h----ccCCEEEEcccC
Confidence            789999997 99999999999999999999999876632211 1112222  2222   1    279999998654

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.06  E-value=0.012  Score=45.55  Aligned_cols=98  Identities=16%  Similarity=0.235  Sum_probs=62.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc-c---------------------cCCCce--eEEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR-D---------------------SWANNV--IWHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~-~---------------------~~~~~~--~~~~~  107 (202)
                      +..+|+|.|+ |++|+++++.|...|. ++++++++.-..  .. +                     ...+.+  +.+..
T Consensus        27 ~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  105 (251)
T 1zud_1           27 LDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ  105 (251)
T ss_dssp             HTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence            4679999998 8899999999999997 788887653210  00 0                     012333  33333


Q ss_pred             cCCCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ++ +.+.+.++++++|+||.+....           ..-..+-++|.+.++ .+|+.+.
T Consensus       106 ~~-~~~~~~~~~~~~DvVi~~~d~~-----------~~r~~l~~~~~~~~~-p~i~~~~  151 (251)
T 1zud_1          106 RL-TGEALKDAVARADVVLDCTDNM-----------ATRQEINAACVALNT-PLITASA  151 (251)
T ss_dssp             CC-CHHHHHHHHHHCSEEEECCSSH-----------HHHHHHHHHHHHTTC-CEEEEEE
T ss_pred             cC-CHHHHHHHHhcCCEEEECCCCH-----------HHHHHHHHHHHHhCC-CEEEEec
Confidence            34 4566778888999999886421           122244566777664 5666654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.05  E-value=0.00042  Score=56.17  Aligned_cols=75  Identities=15%  Similarity=0.062  Sum_probs=48.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEE------ccCC-CHhhHHHHhcCccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQ------GNLL-SSDSWKEALDGVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~------~D~~-~~~~~~~~~~~~d~vi~~  128 (202)
                      +|+|.|.|+ |.+|..++..|.+.|++|++++|++...........+.+..      ..+. -.+++.+++.++|+||.+
T Consensus         4 ~mki~iiG~-G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            4 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             cCeEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            469999997 99999999999999999999998754311100000111110      0110 122345667789999988


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      ...
T Consensus        83 v~~   85 (359)
T 1bg6_A           83 VPA   85 (359)
T ss_dssp             SCG
T ss_pred             CCc
Confidence            864

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.04  E-value=0.0025  Score=45.15  Aligned_cols=84  Identities=15%  Similarity=0.140  Sum_probs=53.1

Q ss_pred             CCeEEEEccC---ChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           56 SEKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~---G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .++|.|.|++   |.+|..+++.|++.|++|+.++..  ..  ..  .++.+       ..++.++.+.+|.++-+... 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~--~~--~i--~G~~~-------y~sl~~l~~~vDlvvi~vp~-   87 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPK--YE--EV--LGRKC-------YPSVLDIPDKIEVVDLFVKP-   87 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTT--CS--EE--TTEEC-------BSSGGGCSSCCSEEEECSCH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCC--CC--eE--CCeec-------cCCHHHcCCCCCEEEEEeCH-
Confidence            5689999998   899999999999999997765432  21  00  12111       12233334468888776532 


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                                 ..+..+++.|.+.|++.+++.
T Consensus        88 -----------~~~~~vv~~~~~~gi~~i~~~  108 (144)
T 2d59_A           88 -----------KLTMEYVEQAIKKGAKVVWFQ  108 (144)
T ss_dssp             -----------HHHHHHHHHHHHHTCSEEEEC
T ss_pred             -----------HHHHHHHHHHHHcCCCEEEEC
Confidence                       223355667777788766544

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=97.04  E-value=0.00083  Score=54.31  Aligned_cols=73  Identities=15%  Similarity=0.147  Sum_probs=49.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHh-cCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL-DGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~-~~~d~vi~~a  129 (202)
                      .+.+|+|+|+ |.+|...++.+...|+ +|+++++++.+..... .- ... ..|..+.+   .+.++. .++|++|.++
T Consensus       164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~-~l-a~~-v~~~~~~~~~~~~~~~~~~g~D~vid~~  239 (343)
T 2dq4_A          164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNPYRLAFAR-PY-ADR-LVNPLEEDLLEVVRRVTGSGVEVLLEFS  239 (343)
T ss_dssp             TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGT-TT-CSE-EECTTTSCHHHHHHHHHSSCEEEEEECS
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH-Hh-HHh-ccCcCccCHHHHHHHhcCCCCCEEEECC
Confidence            6789999999 9999999999999999 9999998754321111 11 111 23554432   222222 3699999999


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       240 g~  241 (343)
T 2dq4_A          240 GN  241 (343)
T ss_dssp             CC
T ss_pred             CC
Confidence            84

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.03  E-value=0.0086  Score=49.13  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=66.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--e---EEEEecCCCCc----------ccccCCCceeEEEccCCCHhhHHHHh
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--T---VASLSRSGRSS----------LRDSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~---V~~l~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      ...||.|+||+|.||.+++-.|+..+.  +   +...+.+.+..          ..+...+-..-+.  +.+  .-.+.+
T Consensus        31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~~~~v~--i~~--~~y~~~  106 (375)
T 7mdh_A           31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVS--IGI--DPYEVF  106 (375)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEE--EES--CHHHHT
T ss_pred             CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhhcCCcE--Eec--CCHHHh
Confidence            457999999999999999999998864  2   65544332221          0111111111111  111  125678


Q ss_pred             cCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHc-CCC-EEEEEec
Q 028890          120 DGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEK-GVK-RFVYISA  166 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~-~~~-~~v~~SS  166 (202)
                      +++|+||..||....    ..+.++.|..-...+.+.+.+. +.+ .++.+|.
T Consensus       107 ~daDvVVitag~prkpG~tR~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsN  159 (375)
T 7mdh_A          107 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN  159 (375)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             CCCCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence            899999999986432    2456677888788888888774 443 5555554

>2yv3_A Aspartate-semialdehyde dehydrogenase; aspartate pathway, structural genomics; 2.70A {Thermus thermophilus}

Probab=97.03  E-value=0.0011  Score=53.70  Aligned_cols=89  Identities=18%  Similarity=0.147  Sum_probs=51.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeE---EEEe-cCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTV---ASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V---~~l~-r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ++|.|.||+|.+|+.+++.|.++++.+   +.+. ++............+.+...|   ++   . + ++|+||.|.|..
T Consensus         1 mkVaI~GAtG~iG~~llr~L~~~~~~~~~l~~~~s~~~~g~~l~~~g~~i~v~~~~---~~---~-~-~~DvV~~a~g~~   72 (331)
T 2yv3_A            1 MRVAVVGATGAVGREILKVLEARNFPLSELRLYASPRSAGVRLAFRGEEIPVEPLP---EG---P-L-PVDLVLASAGGG   72 (331)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCCEEEECGGGSSCEEEETTEEEEEEECC---SS---C-C-CCSEEEECSHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEeeccccCCCEEEEcCceEEEEeCC---hh---h-c-CCCEEEECCCcc
Confidence            479999999999999999999877643   3222 111111001111122333222   22   2 3 899999998852


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                                  .+...+....+.|. ++|-.|+
T Consensus        73 ------------~s~~~a~~~~~~G~-~vId~s~   93 (331)
T 2yv3_A           73 ------------ISRAKALVWAEGGA-LVVDNSS   93 (331)
T ss_dssp             ------------HHHHHHHHHHHTTC-EEEECSS
T ss_pred             ------------chHHHHHHHHHCCC-EEEECCC
Confidence                        12233455556675 6777776

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=97.03  E-value=0.0022  Score=50.50  Aligned_cols=57  Identities=23%  Similarity=0.274  Sum_probs=47.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+++++|.|+++-+|+.++..|+..|+.|+++.+...                      .+.+.++++|+||...|.
T Consensus       158 ~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T~----------------------~L~~~~~~ADIVI~Avg~  214 (286)
T 4a5o_A          158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTR----------------------DLADHVSRADLVVVAAGK  214 (286)
T ss_dssp             CCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTCS----------------------CHHHHHHTCSEEEECCCC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCCc----------------------CHHHHhccCCEEEECCCC
Confidence            457899999999999999999999999999998865421                      255677789999998874

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.03  E-value=0.0007  Score=54.87  Aligned_cols=70  Identities=21%  Similarity=0.199  Sum_probs=49.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+.+|+|+|+ |.+|...++.+...|++|+++++++.+..... .-+...+.   .+++.+.+   ++|++|.+.|.
T Consensus       175 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~v~---~~~~~~~~---~~D~vid~~g~  244 (348)
T 3two_A          175 TKGTKVGVAGF-GGLGSMAVKYAVAMGAEVSVFARNEHKKQDAL-SMGVKHFY---TDPKQCKE---ELDFIISTIPT  244 (348)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHTTCEEEEECSSSTTHHHHH-HTTCSEEE---SSGGGCCS---CEEEEEECCCS
T ss_pred             CCCCEEEEECC-cHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH-hcCCCeec---CCHHHHhc---CCCEEEECCCc
Confidence            35789999997 99999999999999999999998776532111 11222222   34443322   89999999885

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=97.02  E-value=0.00023  Score=56.00  Aligned_cols=71  Identities=18%  Similarity=0.178  Sum_probs=49.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..+++++|.|+ |.+|++++..|.+.|++|++.+|+.++.......-++..  .+     ++.+.++++|+||.+....
T Consensus       127 ~~~~~v~iiGa-G~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~--~~-----~~~~~~~~aDiVi~atp~~  197 (275)
T 2hk9_A          127 VKEKSILVLGA-GGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEV--VN-----SPEEVIDKVQVIVNTTSVG  197 (275)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEE--CS-----CGGGTGGGCSEEEECSSTT
T ss_pred             cCCCEEEEECc-hHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCee--eh-----hHHhhhcCCCEEEEeCCCC
Confidence            45789999997 999999999999999999999987543211111112221  11     2344567899999998753

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=97.02  E-value=0.00085  Score=53.84  Aligned_cols=72  Identities=21%  Similarity=0.107  Sum_probs=46.1

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH--hhHHHHh-cCccEeEEcccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS--DSWKEAL-DGVTAVISCVGG  131 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~--~~~~~~~-~~~d~vi~~a~~  131 (202)
                      +|+|+|++|.+|...++.+...|++|+++++++.+..... .-+...+ .|..+.  +.+.++. .++|++|.++|.
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~-~lGa~~~-i~~~~~~~~~~~~~~~~~~d~vid~~g~  226 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLR-VLGAKEV-LAREDVMAERIRPLDKQRWAAAVDPVGG  226 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHH-HTTCSEE-EECC---------CCSCCEEEEEECSTT
T ss_pred             eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-HcCCcEE-EecCCcHHHHHHHhcCCcccEEEECCcH
Confidence            7999999999999999999999999999998765421111 1122221 244443  1222222 258999999985

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=97.02  E-value=0.00055  Score=56.29  Aligned_cols=75  Identities=16%  Similarity=0.170  Sum_probs=53.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccC------------------CCHhhHH
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNL------------------LSSDSWK  116 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~------------------~~~~~~~  116 (202)
                      .+.+|+|+|+ |.+|...++.+...|++|++++|++.+..... .-+.+++..|+                  .+.+.+.
T Consensus       183 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          183 KPASALVLGV-GVAGLQALATAKRLGAKTTGYDVRPEVAEQVR-SVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             CCCEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSGGGHHHHH-HTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CCCEEEEECc-hHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            5679999998 99999999999999999999999875421111 12334433221                  1245678


Q ss_pred             HHhcCccEeEEcccc
Q 028890          117 EALDGVTAVISCVGG  131 (202)
Q Consensus       117 ~~~~~~d~vi~~a~~  131 (202)
                      +.++++|+||.++..
T Consensus       261 e~l~~aDIVI~tv~i  275 (381)
T 3p2y_A          261 DAITKFDIVITTALV  275 (381)
T ss_dssp             HHHTTCSEEEECCCC
T ss_pred             HHHhcCCEEEECCCC
Confidence            888999999998754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.02  E-value=0.0014  Score=49.34  Aligned_cols=37  Identities=16%  Similarity=0.195  Sum_probs=31.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ..+++|.|.|+ |.+|..++..|.+.|++|++.+|++.
T Consensus        17 ~~~~~I~iiG~-G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           17 FQGMEITIFGK-GNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             ---CEEEEECC-SHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             cCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            35679999995 99999999999999999999998754

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.01  E-value=0.0015  Score=54.16  Aligned_cols=77  Identities=17%  Similarity=0.166  Sum_probs=54.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEcc----------------CCC------H
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGN----------------LLS------S  112 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D----------------~~~------~  112 (202)
                      .+.+|+|+|+ |-+|...++.+...|++|++.++++....... .-+..++..+                +++      .
T Consensus       189 ~~~kV~ViG~-G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~-~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          189 PAAKIFVMGA-GVAGLQAIATARRLGAVVSATDVRPAAKEQVA-SLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSTTHHHHHH-HTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH-HcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            4579999998 99999999999999999999999876421111 1123333222                122      2


Q ss_pred             hhHHHHhcCccEeEEccccCC
Q 028890          113 DSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus       113 ~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      +.+.++++++|+||.++...+
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg  287 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPG  287 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSS
T ss_pred             hHHHHHhcCCCEEEECCcCCC
Confidence            478888899999999976443

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=97.01  E-value=0.0006  Score=57.44  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=33.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ..+.+|+|+|++|.+|...++.+...|++|+++++++.
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~  264 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQ  264 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHH
Confidence            45679999999999999999999999999999987643

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.00  E-value=0.00092  Score=53.33  Aligned_cols=37  Identities=14%  Similarity=0.299  Sum_probs=32.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .|++|.++|= |.+|..+++.|++.||+|++.+|++.+
T Consensus         2 ~M~kIgfIGl-G~MG~~mA~~L~~~G~~v~v~dr~~~~   38 (300)
T 3obb_A            2 HMKQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSA   38 (300)
T ss_dssp             -CCEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CcCEEEEeee-hHHHHHHHHHHHhCCCeEEEEcCCHHH
Confidence            4679999995 999999999999999999999998654

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=97.00  E-value=0.0021  Score=51.45  Aligned_cols=63  Identities=21%  Similarity=0.138  Sum_probs=49.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...++++.|.|. |.||+.+++.|...|++|++.+|+.....            .+   .++++++++++|+|+.+...
T Consensus       141 ~l~g~~vgIIG~-G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------------~~---~~~l~ell~~aDvV~l~~p~  203 (311)
T 2cuk_A          141 DLQGLTLGLVGM-GRIGQAVAKRALAFGMRVVYHARTPKPLP------------YP---FLSLEELLKEADVVSLHTPL  203 (311)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSS------------SC---BCCHHHHHHHCSEEEECCCC
T ss_pred             CCCCCEEEEEEE-CHHHHHHHHHHHHCCCEEEEECCCCcccc------------cc---cCCHHHHHhhCCEEEEeCCC
Confidence            457789999996 99999999999999999999998764421            12   23456677789999988754

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=97.00  E-value=0.0036  Score=50.46  Aligned_cols=68  Identities=25%  Similarity=0.362  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...++++.|.|- |.||+.+++.|...|++|++.+|++....      .+...    ...++++++++++|+|+.+...
T Consensus       137 ~l~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~------~~~~~----~~~~~l~ell~~aDvV~l~lPl  204 (324)
T 3hg7_A          137 GLKGRTLLILGT-GSIGQHIAHTGKHFGMKVLGVSRSGRERA------GFDQV----YQLPALNKMLAQADVIVSVLPA  204 (324)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCT------TCSEE----ECGGGHHHHHHTCSEEEECCCC
T ss_pred             ccccceEEEEEE-CHHHHHHHHHHHhCCCEEEEEcCChHHhh------hhhcc----cccCCHHHHHhhCCEEEEeCCC
Confidence            456889999997 99999999999999999999998763321      11111    1245688889999999988764

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=97.00  E-value=0.0043  Score=50.39  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=52.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccC-CCHhhHHHHhcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNL-LSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~-~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ||+|+|.|| |..|..++..+.+.|++|++++.++...... ..+  +++..|. .|.+.+....+++|+|+-..+
T Consensus         1 MK~I~ilGg-g~~g~~~~~~Ak~~G~~vv~vd~~~~~~~~~-~aD--~~~~~~~~~d~~~~~~~~~~~D~v~~~~~   72 (363)
T 4ffl_A            1 MKTICLVGG-KLQGFEAAYLSKKAGMKVVLVDKNPQALIRN-YAD--EFYCFDVIKEPEKLLELSKRVDAVLPVNE   72 (363)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTTT-TSS--EEEECCTTTCHHHHHHHHTSSSEEEECCC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCChhHh-hCC--EEEECCCCcCHHHHHHHhcCCCEEEECCC
Confidence            689999997 8999999999999999999998765432111 111  3455564 467777777789998875543

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.99  E-value=0.0044  Score=49.42  Aligned_cols=103  Identities=15%  Similarity=0.114  Sum_probs=62.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------ccc--CCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RDS--WANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ++|+|.|+|+ |.+|..++..|...|+  +|++++|++....      ...  ......+...  .+.    +.+.++|+
T Consensus         6 ~~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~----~~~~~aD~   78 (319)
T 1lld_A            6 KPTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGS--DDP----EICRDADM   78 (319)
T ss_dssp             -CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEE--SCG----GGGTTCSE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeC--CCH----HHhCCCCE
Confidence            3579999998 9999999999999998  9999998753211      000  0011222211  122    24678999


Q ss_pred             eEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          125 VISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       125 vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                      ||.+++....+    ......|......+++.+.+.+.+.+|..
T Consensus        79 Vii~v~~~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~  122 (319)
T 1lld_A           79 VVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYML  122 (319)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEE
T ss_pred             EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEE
Confidence            99999754322    22334455555566666665544434433

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.99  E-value=0.00058  Score=54.67  Aligned_cols=102  Identities=12%  Similarity=0.058  Sum_probs=64.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCCCcccc---cCC------CceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGRSSLRD---SWA------NNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~~~~~~---~~~------~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |+|.|+|+ |.+|..++..|...  |++|+++++++......   ...      ....+...  .|.   ++ ++++|+|
T Consensus         1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t--~d~---~~-l~~aDvV   73 (310)
T 1guz_A            1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGS--NDY---AD-TANSDIV   73 (310)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEE--SCG---GG-GTTCSEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEEC--CCH---HH-HCCCCEE
Confidence            58999998 99999999999986  78999999986432110   000      11111110  222   23 6799999


Q ss_pred             EEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      |.+++....+    ...+..|..-...+++.+.+...+ .++.++
T Consensus        74 iiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t  118 (310)
T 1guz_A           74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (310)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence            9999853321    233446666667777777776544 455553

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=96.99  E-value=0.0016  Score=51.74  Aligned_cols=65  Identities=20%  Similarity=0.149  Sum_probs=50.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...++++.|.|- |.||+.+++.|...|++|++.+|+.....      .+.       ..++++++++++|+|+.+...
T Consensus       119 ~l~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~~~~~------~~~-------~~~~l~ell~~aDiV~l~~P~  183 (290)
T 3gvx_A          119 LLYGKALGILGY-GGIGRRVAHLAKAFGMRVIAYTRSSVDQN------VDV-------ISESPADLFRQSDFVLIAIPL  183 (290)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSCCCTT------CSE-------ECSSHHHHHHHCSEEEECCCC
T ss_pred             eeecchheeecc-CchhHHHHHHHHhhCcEEEEEeccccccc------ccc-------ccCChHHHhhccCeEEEEeec
Confidence            357889999997 99999999999999999999998764421      111       123567778889999988764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.98  E-value=0.0011  Score=53.39  Aligned_cols=101  Identities=17%  Similarity=0.155  Sum_probs=63.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccccc--------CCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDS--------WANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~~~--------~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      |+|.|+|+ |.+|..++..|+..|+  +|+++++++.......        ......+..   .|.    +.++++|+||
T Consensus         1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~---~d~----~~~~~aDvVi   72 (319)
T 1a5z_A            1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYA---GDY----ADLKGSDVVI   72 (319)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEE---CCG----GGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEe---CCH----HHhCCCCEEE
Confidence            58999998 9999999999999998  9999998753211100        001112221   232    2467999999


Q ss_pred             EccccCCCC----ccchhhhHHHHHHHHHHHHHcCCC-EEEEEe
Q 028890          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVK-RFVYIS  165 (202)
Q Consensus       127 ~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~S  165 (202)
                      .+++....+    .+....|......+++.+.+.... .++.+|
T Consensus        73 iav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t  116 (319)
T 1a5z_A           73 VAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (319)
T ss_dssp             ECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            999864422    223344555566777777665544 444443

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.97  E-value=0.0019  Score=50.61  Aligned_cols=56  Identities=16%  Similarity=0.192  Sum_probs=47.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+++++|.|+++-+|+.++..|+..|++|+++.+..                      ..+.+.++++|+||.+.|.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t----------------------~~L~~~~~~ADIVI~Avg~  203 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT----------------------KDIGSMTRSSKIVVVAVGR  203 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC----------------------SCHHHHHHHSSEEEECSSC
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc----------------------ccHHHhhccCCEEEECCCC
Confidence            6789999999999999999999999999999887642                      2255667788999988875

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.95  E-value=0.0015  Score=52.98  Aligned_cols=74  Identities=23%  Similarity=0.176  Sum_probs=49.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC----HhhHHHHh-----cCccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS----SDSWKEAL-----DGVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~----~~~~~~~~-----~~~d~v  125 (202)
                      .+.+|+|+|+ |.+|...++.+...|++|+++++++.+..... .-+... ..|..+    .+.+.+..     .++|++
T Consensus       168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~-~lGa~~-~~~~~~~~~~~~~i~~~~~~~~g~g~D~v  244 (352)
T 1e3j_A          168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK-NCGADV-TLVVDPAKEEESSIIERIRSAIGDLPNVT  244 (352)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH-HTTCSE-EEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH-HhCCCE-EEcCcccccHHHHHHHHhccccCCCCCEE
Confidence            5679999997 99999999999889999999888754321110 112221 124432    33455544     369999


Q ss_pred             EEcccc
Q 028890          126 ISCVGG  131 (202)
Q Consensus       126 i~~a~~  131 (202)
                      |.++|.
T Consensus       245 id~~g~  250 (352)
T 1e3j_A          245 IDCSGN  250 (352)
T ss_dssp             EECSCC
T ss_pred             EECCCC
Confidence            999975

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=96.95  E-value=0.00075  Score=53.57  Aligned_cols=36  Identities=17%  Similarity=0.085  Sum_probs=32.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      +++|.|.|. |.+|..+++.|.+.|++|++.+|++.+
T Consensus        15 ~~~I~vIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~   50 (296)
T 3qha_A           15 QLKLGYIGL-GNMGAPMATRMTEWPGGVTVYDIRIEA   50 (296)
T ss_dssp             CCCEEEECC-STTHHHHHHHHTTSTTCEEEECSSTTT
T ss_pred             CCeEEEECc-CHHHHHHHHHHHHCCCeEEEEeCCHHH
Confidence            468999996 999999999999999999999998765

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=96.95  E-value=0.0016  Score=53.22  Aligned_cols=92  Identities=16%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCC--CcccccCC-----------CceeEEEccCCCHhhHHHHhc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR--SSLRDSWA-----------NNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~--~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      ++.+|.|.||||++|..+++.|.+..+ ++..+..+..  +......+           ....+...   +++    .+.
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~----~~~   78 (359)
T 4dpk_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT---DPK----LMD   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC---CGG----GCT
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC---CHH----Hhc
Confidence            456899999999999999998877654 7766643322  21111000           01122111   233    246


Q ss_pred             CccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       121 ~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ++|+||.|.+...            ...++..+.+.|. ++|-.|+
T Consensus        79 ~vDvvf~a~p~~~------------s~~~a~~~~~~G~-~vIDlSa  111 (359)
T 4dpk_A           79 DVDIIFSPLPQGA------------AGPVEEQFAKEGF-PVISNSP  111 (359)
T ss_dssp             TCCEEEECCCTTT------------HHHHHHHHHHTTC-EEEECSS
T ss_pred             CCCEEEECCChHH------------HHHHHHHHHHCCC-EEEEcCC
Confidence            8999999987532            1133455556675 7777776

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=96.95  E-value=0.0016  Score=53.22  Aligned_cols=92  Identities=16%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCC--CcccccCC-----------CceeEEEccCCCHhhHHHHhc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR--SSLRDSWA-----------NNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~--~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      ++.+|.|.||||++|..+++.|.+..+ ++..+..+..  +......+           ....+...   +++    .+.
T Consensus         6 ~~~kVaIvGATGyvG~eLlrlL~~hP~~el~~l~S~~saGk~~~~~~p~~~~~~~~~~~~~~~v~~~---~~~----~~~   78 (359)
T 4dpl_A            6 RTLKAAILGATGLVGIEYVRMLSNHPYIKPAYLAGKGSVGKPYGEVVRWQTVGQVPKEIADMEIKPT---DPK----LMD   78 (359)
T ss_dssp             CCEEEEETTTTSTTHHHHHHHHTTCSSEEEEEEEESTTTTSBHHHHCCCCSSSCCCHHHHTCBCEEC---CGG----GCT
T ss_pred             CCCeEEEECCCCHHHHHHHHHHHhCCCceEEEEECchhcCCChhHhcccccccccccccccceEEeC---CHH----Hhc
Confidence            456899999999999999998877654 7766643322  21111000           01122111   233    246


Q ss_pred             CccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          121 GVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       121 ~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ++|+||.|.+...            ...++..+.+.|. ++|-.|+
T Consensus        79 ~vDvvf~a~p~~~------------s~~~a~~~~~~G~-~vIDlSa  111 (359)
T 4dpl_A           79 DVDIIFSPLPQGA------------AGPVEEQFAKEGF-PVISNSP  111 (359)
T ss_dssp             TCCEEEECCCTTT------------HHHHHHHHHHTTC-EEEECSS
T ss_pred             CCCEEEECCChHH------------HHHHHHHHHHCCC-EEEEcCC
Confidence            8999999987532            1133455556675 7777776

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.94  E-value=0.00078  Score=52.99  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=47.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc--ccCC-CceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--DSWA-NNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~--~~~~-~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      ..++++++|+|+ |++|++++..|.+.|. +|++.+|+.++...  .... .++..+  ++.+   +..  .++|+||++
T Consensus       117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~--~~~~---l~~--~~~DivIna  188 (272)
T 3pwz_A          117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRIS--RYEA---LEG--QSFDIVVNA  188 (272)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEE--CSGG---GTT--CCCSEEEEC
T ss_pred             CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEe--eHHH---hcc--cCCCEEEEC
Confidence            457889999998 8999999999999996 99999998654211  0001 123333  2222   221  679999998


Q ss_pred             cc
Q 028890          129 VG  130 (202)
Q Consensus       129 a~  130 (202)
                      -.
T Consensus       189 Tp  190 (272)
T 3pwz_A          189 TS  190 (272)
T ss_dssp             SS
T ss_pred             CC
Confidence            65

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=96.94  E-value=0.00045  Score=52.43  Aligned_cols=37  Identities=19%  Similarity=0.260  Sum_probs=32.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEE-EecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVAS-LSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~-l~r~~~~   92 (202)
                      ++++|.|.| .|.+|.++++.|.+.|++|++ .+|+++.
T Consensus        22 ~mmkI~IIG-~G~mG~~la~~l~~~g~~V~~v~~r~~~~   59 (220)
T 4huj_A           22 SMTTYAIIG-AGAIGSALAERFTAAQIPAIIANSRGPAS   59 (220)
T ss_dssp             GSCCEEEEE-CHHHHHHHHHHHHHTTCCEEEECTTCGGG
T ss_pred             cCCEEEEEC-CCHHHHHHHHHHHhCCCEEEEEECCCHHH
Confidence            357999999 599999999999999999998 7777544

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.94  E-value=0.001  Score=51.51  Aligned_cols=71  Identities=18%  Similarity=0.312  Sum_probs=44.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEE-EecCCCCc--------ccccCCCceeEEEccCCCHhhHHHHhc---Ccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVAS-LSRSGRSS--------LRDSWANNVIWHQGNLLSSDSWKEALD---GVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~-l~r~~~~~--------~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d  123 (202)
                      |+||.|+|+ |.+|+.+++.+.++++++++ ++|+....        .... . +..+ ..|++.++.+.+.++   +..
T Consensus         3 MmkI~ViGa-GrMG~~i~~~l~~~~~eLva~~d~~~~~~~gv~v~~dl~~l-~-~~DV-vIDft~p~a~~~~~~l~~g~~   78 (243)
T 3qy9_A            3 SMKILLIGY-GAMNQRVARLAEEKGHEIVGVIENTPKATTPYQQYQHIADV-K-GADV-AIDFSNPNLLFPLLDEDFHLP   78 (243)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEECSSCC--CCSCBCSCTTTC-T-TCSE-EEECSCHHHHHHHHTSCCCCC
T ss_pred             ceEEEEECc-CHHHHHHHHHHHhCCCEEEEEEecCccccCCCceeCCHHHH-h-CCCE-EEEeCChHHHHHHHHHhcCCc
Confidence            679999999 99999999999998777766 45554321        0011 1 2332 246677766554432   456


Q ss_pred             EeEEccc
Q 028890          124 AVISCVG  130 (202)
Q Consensus       124 ~vi~~a~  130 (202)
                      +|+...|
T Consensus        79 vVigTTG   85 (243)
T 3qy9_A           79 LVVATTG   85 (243)
T ss_dssp             EEECCCS
T ss_pred             eEeCCCC
Confidence            6665554

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.93  E-value=0.00026  Score=55.84  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=32.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |++|.|.|. |.+|..+++.|++.|++|++.+|++.+
T Consensus         1 M~~I~iiG~-G~mG~~~a~~l~~~G~~V~~~dr~~~~   36 (287)
T 3pdu_A            1 MTTYGFLGL-GIMGGPMAANLVRAGFDVTVWNRNPAK   36 (287)
T ss_dssp             CCCEEEECC-STTHHHHHHHHHHHTCCEEEECSSGGG
T ss_pred             CCeEEEEcc-CHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence            468999985 999999999999999999999998654

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.93  E-value=0.0034  Score=50.52  Aligned_cols=73  Identities=10%  Similarity=-0.047  Sum_probs=51.9

Q ss_pred             CCCeEEEEccCChhHHH-HHHHHHHCCCeEEEEecCCCCcc-cccCCCceeEEEccCCCHhhHHHHh-cCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSH-ICREALDRGLTVASLSRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEAL-DGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~-l~~~Ll~~g~~V~~l~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~~-~~~d~vi~~a~~  131 (202)
                      .+++|.+.|. |++|.. +++.|.++|++|.+.+++..... ......++++..+.  +++.   +. .++|.||...|.
T Consensus         3 ~~~~i~~iGi-Gg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~--~~~~---l~~~~~d~vV~Spgi   76 (326)
T 3eag_A            3 AMKHIHIIGI-GGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGF--DAAQ---LDEFKADVYVIGNVA   76 (326)
T ss_dssp             CCCEEEEESC-CSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESC--CGGG---GGSCCCSEEEECTTC
T ss_pred             CCcEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCC--CHHH---cCCCCCCEEEECCCc
Confidence            4689999998 899995 89999999999999998754321 12222466666552  3332   23 479999999887


Q ss_pred             CC
Q 028890          132 FG  133 (202)
Q Consensus       132 ~~  133 (202)
                      ..
T Consensus        77 ~~   78 (326)
T 3eag_A           77 KR   78 (326)
T ss_dssp             CT
T ss_pred             CC
Confidence            54

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.93  E-value=0.0011  Score=52.28  Aligned_cols=65  Identities=14%  Similarity=0.156  Sum_probs=42.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +|+|.|.|+ |.+|..+++.|.+.|++|++.+ ++..... ....++.       -.+++.++++++|+||.+..
T Consensus         3 ~m~i~iiG~-G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~-~~~~g~~-------~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            3 AMKLGFIGL-GIMGSPMAINLARAGHQLHVTT-IGPVADE-LLSLGAV-------NVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             -CEEEECCC-STTHHHHHHHHHHTTCEEEECC-SSCCCHH-HHTTTCB-------CCSSHHHHHHTCSEEEECCS
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhCCCEEEEEc-CHHHHHH-HHHcCCc-------ccCCHHHHHhcCCEEEEECC
Confidence            468999996 9999999999999999998887 5443211 1111211       11234455567788877763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1hdoa_	205	c.2.1.2 (A:) Biliverdin IX beta reductase {Human (	4e-16
d2b69a1	312	c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1	3e-13
d1e6ua_	315	c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras	8e-13
d1db3a_	357	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric	8e-12
d1xgka_	350	c.2.1.2 (A:) Negative transcriptional regulator Nm	1e-11
d1qyda_	312	c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {	4e-11
d1udca_	338	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	6e-11
d1r6da_	322	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	8e-11
d2c5aa1	363	c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T	4e-10
d1orra_	338	c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella	5e-10
d1t2aa_	347	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H	3e-09
d1kewa_	361	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	8e-09
d1qyca_	307	c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta	1e-08
d1y1pa1	342	c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo	2e-08
d2blla1	342	c.2.1.2 (A:316-657) Polymyxin resistance protein A	4e-08
d2a35a1	212	c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pse	6e-08
d1rkxa_	356	c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia	1e-07
d1z45a2	347	c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep	2e-07
d1oc2a_	346	c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {	2e-07
d2q46a1	252	c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (	2e-07
d1vl0a_	281	c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD	3e-07
d1sb8a_	341	c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W	8e-07
d1n2sa_	298	c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct	2e-06
d1rpna_	321	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo	3e-06
d1ek6a_	346	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	5e-06
d1i24a_	393	c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1	7e-06
d1n7ha_	339	c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr	1e-05
d2bkaa1	232	c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {H	1e-05
d1eq2a_	307	c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimer	1e-05
d1gy8a_	383	c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras	5e-04

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 4e-16
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 2/112 (1%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ + G  G  G     +A+  G  V  L R   S L            G++L +    +
Sbjct: 5   KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS-SRLPSEGPRPAHVVVGDVLQAADVDK 63

Query: 118 ALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF 169
            + G  AVI  +G     S    +      N + A    GV + V  ++A  
Sbjct: 64  TVAGQDAVIVLLGTRNDLSPTT-VMSEGARNIVAAMKAHGVDKVVACTSAFL 114

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-13
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 8/114 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++L+ GG GFVGSH+  + +  G  V  +        + +  + +      L++ D  + 
Sbjct: 3   RILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGR-KRNVEHWIGHENFELINHDVVEP 61

Query: 118 ALDGVTAVI-----SCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVYIS 165
               V  +      +    +  N     K N    +N +  A   G  R +  S
Sbjct: 62  LYIEVDQIYHLASPASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLAS 114

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

 Score = 63.4 bits (153), Expect = 8e-13
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 14/112 (12%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           ++ + G  G VGS I R+   RG     L      +L DS A +  +            E
Sbjct: 4   RVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDELNLLDSRAVHDFFA----------SE 53

Query: 118 ALDGVTAVISCVGGFGSNSYM----YKINGTANINAIRAASEKGVKRFVYIS 165
            +D V    + VGG  +N+         N     N I AA +  V + +++ 
Sbjct: 54  RIDQVYLAAAKVGGIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLG 105

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

 Score = 61.0 bits (147), Expect = 8e-12
 Identities = 27/131 (20%), Positives = 45/131 (34%), Gaps = 21/131 (16%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN----------NVIWH 105
           S+  L+ G  G  GS++    L++G  V  + R   S   +   +              H
Sbjct: 1   SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLH 60

Query: 106 QGNLLSSDSWKEALDG--------VTAVISCVGGFGSNSYMYKIN--GTANI-NAIRAAS 154
            G+L  + +    L          + A+      F S  Y   ++  GT  +  AIR   
Sbjct: 61  YGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLG 120

Query: 155 EKGVKRFVYIS 165
            +   RF   S
Sbjct: 121 LEKKTRFYQAS 131

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} Length = 350

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

 Score = 60.4 bits (145), Expect = 1e-11
 Identities = 20/110 (18%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWAN--NVIWHQGNLLSSDSW 115
            + V+G  G  G+ + R A   G  V +   S +  + +      NV   QG LL++   
Sbjct: 5   TIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPL 64

Query: 116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
            + L     +        +   +         +   AA   G  +    S
Sbjct: 65  MDTLFEGAHLAFINTTSQAGDEIA-----IGKDLADAAKRAGTIQHYIYS 109

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

 Score = 58.6 bits (140), Expect = 4e-11
 Identities = 22/116 (18%), Positives = 39/116 (33%), Gaps = 12/116 (10%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-------LRDSWANNVIWHQGNLL 110
           ++L++GG G++G  I   ++  G     L R    S       L           + +L 
Sbjct: 5   RVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLD 64

Query: 111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA 166
                 +AL  V  VIS +        +   +    +  + A  E G  +    S 
Sbjct: 65  DHQRLVDALKQVDVVISAL-----AGGVLSHHILEQLKLVEAIKEAGNIKRFLPSE 115

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

 Score = 58.4 bits (140), Expect = 6e-11
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 14/122 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTV---ASLSRSGRSSL---RDSWANNVIWHQGNLLS 111
           ++LV GG+G++GSH C + L  G  V    +L  S RS L         +  + +G++ +
Sbjct: 2   RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRN 61

Query: 112 SDSWKEAL-----DGV--TAVISCVGGFGSN-SYMYKINGTANINAIRAASEKGVKRFVY 163
                E L     D V   A +  VG         Y  N    +  I A     VK F++
Sbjct: 62  EALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIF 121

Query: 164 IS 165
            S
Sbjct: 122 SS 123

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 57.9 bits (139), Expect = 8e-11
 Identities = 31/125 (24%), Positives = 52/125 (41%), Gaps = 17/125 (13%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA---------SLSRSG-RSSLRDSWAN-NVIWHQ 106
           +LLV GG GF+GSH  R+ L                SL+ +G R++L    A+  + +  
Sbjct: 2   RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVH 61

Query: 107 GNLLSSDSWKEALDGVTAVISC------VGGFGSNSYMYKINGTANINAIRAASEKGVKR 160
           G++  +      L GV A++               S   + N       ++ A + GV R
Sbjct: 62  GDIRDAGLLARELRGVDAIVHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGR 121

Query: 161 FVYIS 165
            V++S
Sbjct: 122 VVHVS 126

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.1 bits (134), Expect = 4e-10
 Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 8/115 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
           K+ + G  GF+ SHI R     G  V +     ++           +H  +L   ++  +
Sbjct: 17  KISITGAGGFIASHIARRLKHEGHYVIASDWK-KNEHMTEDMFCDEFHLVDLRVMENCLK 75

Query: 118 ALDGVTAVISC-------VGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS 165
             +GV  V +             ++S +   N   + N I AA   G+KRF Y S
Sbjct: 76  VTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYAS 130

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

 Score = 55.5 bits (132), Expect = 5e-10
 Identities = 24/122 (19%), Positives = 45/122 (36%), Gaps = 14/122 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA-----NNVIWHQGNLLSS 112
           KLL+ GG GF+GS++   AL +G+ +       R    D+        N  +  G++ + 
Sbjct: 2   KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNK 61

Query: 113 DSWKEALDGV-------TAVISCVGGFGSN-SYMYKINGTANINAIRAASEKGVK-RFVY 163
           +     +           A    +     N    ++IN    +N + A  +       +Y
Sbjct: 62  NDVTRLITKYMPDSCFHLAGQVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIY 121

Query: 164 IS 165
            S
Sbjct: 122 SS 123

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 3e-09
 Identities = 23/128 (17%), Positives = 43/128 (33%), Gaps = 22/128 (17%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------LRDSWANNVIWHQGN 108
           L+ G  G  GS++    L++G  V  + R   S             +     N+  H G+
Sbjct: 5   LITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGD 64

Query: 109 LLSSDSWKEALDG--------VTAVISCVGGFGSNSYMYKIN--GTANI-NAIRAASEKG 157
           L  S    + ++         + A       F    Y   ++  GT  + +A++      
Sbjct: 65  LTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLIN 124

Query: 158 VKRFVYIS 165
             +F   S
Sbjct: 125 SVKFYQAS 132

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 23/131 (17%)

Query: 58  KLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSLRDSWA--NNVIWHQGNLLS 111
           K+L+ GG GF+GS + R  +       + +  L+ +G        +  N   +   ++  
Sbjct: 2   KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICD 61

Query: 112 SDSWKEALDGVT-------AVISCVGGFGSN-SYMYKINGTANINAIRAASEKGVK---- 159
           S       +          A  S V    +  +   + N       +  A +        
Sbjct: 62  SAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGED 121

Query: 160 -----RFVYIS 165
                RF +IS
Sbjct: 122 KKNNFRFHHIS 132

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

 Score = 51.7 bits (122), Expect = 1e-08
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--------LRDSWANNVIWHQGNL 109
           ++L++G  G++G H+ + +LD G     L R   +S        L    A+      G++
Sbjct: 5   RILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSI 64

Query: 110 LSSDSWKEALDGVTAVISCVGGFGSNSYMY 139
               S  EA+  V  VIS VG     S + 
Sbjct: 65  DDHASLVEAVKNVDVVISTVGSLQIESQVN 94

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 15/36 (41%), Positives = 20/36 (55%)

Query: 54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS 89
          P    +LV G NGFV SH+  + L+ G  V   +RS
Sbjct: 9  PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARS 44

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

 Score = 50.0 bits (117), Expect = 4e-08
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 58  KLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           ++L+LG NGF+G+H+    L      V  L     +  R     +  + +G++     W 
Sbjct: 2   RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWI 61

Query: 117 EAL 119
           E  
Sbjct: 62  EYH 64

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.0 bits (115), Expect = 6e-08
 Identities = 9/59 (15%), Positives = 20/59 (33%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           ++L+ G  G  G H+    L        ++ + ++       +N +     LL      
Sbjct: 4   RVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHPRLDNPVGPLAELLPQLDGS 62

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

 Score = 48.7 bits (114), Expect = 1e-07
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSR--SGRSSLRDS--WANNVIWHQGNLLSSD 113
           ++ V G  GF G  +       G TV   S       SL ++   A+ +    G++   +
Sbjct: 10  RVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQN 69

Query: 114 SW 115
             
Sbjct: 70  KL 71

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 24/122 (19%), Positives = 46/122 (37%), Gaps = 14/122 (11%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNL 109
           S+ +LV GG G++GSH   E ++ G           S+      L     +++ +++ +L
Sbjct: 1   SKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDL 60

Query: 110 LSSDSWKEAL-----DGVT--AVISCVGGFGSNSYMY-KINGTANINAIRAASEKGVKRF 161
                 ++       D V   A +  VG        Y   N    +  +    +  V +F
Sbjct: 61  CDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKF 120

Query: 162 VY 163
           V+
Sbjct: 121 VF 122

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

 Score = 48.1 bits (113), Expect = 2e-07
 Identities = 16/99 (16%), Positives = 40/99 (40%), Gaps = 6/99 (6%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVA-----SLSRSG-RSSLRDSWANNVIWHQGNLLS 111
            ++V GG GF+GS+      +    V       L+ +G +++L     + V    G++  
Sbjct: 4   NIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIAD 63

Query: 112 SDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAI 150
           ++   +      A++       +++ +   +   + N I
Sbjct: 64  AELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFI 102

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 252

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 47.5 bits (111), Expect = 2e-07
 Identities = 11/80 (13%), Positives = 27/80 (33%)

Query: 60  LVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL 119
           LV G +G  G  + ++  +      +      +  ++          G++  +DS   A 
Sbjct: 7   LVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAF 66

Query: 120 DGVTAVISCVGGFGSNSYMY 139
            G+ A++            +
Sbjct: 67  QGIDALVILTSAVPKMKPGF 86

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

 Score = 47.5 bits (111), Expect = 3e-07
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS 89
          K+L+ G NG +G  I ++   + + V      
Sbjct: 3  KILITGANGQLGREIQKQLKGKNVEVIPTDVQ 34

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.1 bits (108), Expect = 8e-07
 Identities = 27/128 (21%), Positives = 44/128 (34%), Gaps = 16/128 (12%)

Query: 53  PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSR----------SGRSSLRDSWANNV 102
           P   +  L+ G  GF+GS++    L     V  L              RS + +   +N 
Sbjct: 13  PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNF 72

Query: 103 IWHQGNLLSSDSWKEALDGVTAVISCVGGFGSNSY------MYKINGTANINAIRAASEK 156
            + QG++ + D    A  GV  V+                     N    +N + AA + 
Sbjct: 73  KFIQGDIRNLDDCNNACAGVDYVLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDA 132

Query: 157 GVKRFVYI 164
            V+ F Y 
Sbjct: 133 KVQSFTYA 140

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 15/73 (20%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE 117
            +L+ G  G VG  + R     G  +A    S                 G+  +     E
Sbjct: 2   NILLFGKTGQVGWELQRSLAPVGNLIALDVHSKE-------------FCGDFSNPKGVAE 48

Query: 118 ALDGV--TAVISC 128
            +  +    +++ 
Sbjct: 49  TVRKLRPDVIVNA 61

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 3e-06
 Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA-----NNVIWHQGNLLSS 112
             LV G  G  G+++ +  L++G  V  L     S  R          ++ +  G++  +
Sbjct: 2   SALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADA 61

Query: 113 DSWKE 117
            S + 
Sbjct: 62  CSVQR 66

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 5e-06
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 12/72 (16%)

Query: 56  SEKLLVLGGNGFVGSHICREALDRGLTVA---SLSRSGRSS---------LRDSWANNVI 103
           +EK+LV GG G++GSH   E L+ G       +   + R           +++    +V 
Sbjct: 2   AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVE 61

Query: 104 WHQGNLLSSDSW 115
           + + ++L   + 
Sbjct: 62  FEEMDILDQGAL 73

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.4 bits (100), Expect = 7e-06
 Identities = 10/85 (11%), Positives = 26/85 (30%), Gaps = 22/85 (25%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTV---ASLSRSGRSS-------------------LR 95
           +++V+GG+G+ G         +   V    +L R                         +
Sbjct: 3   RVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWK 62

Query: 96  DSWANNVIWHQGNLLSSDSWKEALD 120
                ++  + G++   +   E+  
Sbjct: 63  ALTGKSIELYVGDICDFEFLAESFK 87

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 15/96 (15%), Positives = 28/96 (29%), Gaps = 11/96 (11%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSG-----------RSSLRDSWANNVIWHQ 106
             L+ G  G  GS++    L +G  V  L R                  +     +  H 
Sbjct: 3   IALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHY 62

Query: 107 GNLLSSDSWKEALDGVTAVISCVGGFGSNSYMYKIN 142
            +L  + S +  +D +           S+  +    
Sbjct: 63  ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEI 98

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 11/58 (18%), Positives = 20/58 (34%)

Query: 58  KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
            + +LG +G  G  + +E L++GL         R    D  A   +  +         
Sbjct: 16  SVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDD 73

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} Length = 307

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

 Score = 42.3 bits (97), Expect = 1e-05
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 60  LVLGGNGFVGSHICREALDRGLT----VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSW 115
           +V GG GF+GS+I +   D+G+T    V +L    +              + + L     
Sbjct: 3   IVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQIMA 62

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

 Score = 37.8 bits (86), Expect = 5e-04
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 58  KLLVLGGNGFVGSHICREAL-DRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK 116
           ++LV GG G++GSH  R  L D   +V  +     +  +             L  SD  K
Sbjct: 4   RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	99.93
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.93
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.92
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	99.92
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	99.91
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	99.91
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.9
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	99.9
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	99.9
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	99.89
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	99.89
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.89
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	99.89
d1r6da_	322	dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces	99.88
d1e6ua_	315	GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (	99.88
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	99.88
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	99.88
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	99.87
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	99.87
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	99.87
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	99.87
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	99.86
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	99.86
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	99.86
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	99.86
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	99.86
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	99.85
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	99.85
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	99.85
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	99.85
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	99.85
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	99.85
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	99.85
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	99.85
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	99.85
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	99.85
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	99.84
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	99.84
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	99.84
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	99.84
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	99.84
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	99.84
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	99.84
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	99.84
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	99.83
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	99.83
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	99.83
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	99.82
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	99.82
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	99.82
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	99.82
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	99.82
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	99.81
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	99.81
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	99.81
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	99.81
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	99.81
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	99.8
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	99.8
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	99.8
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	99.8
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	99.8
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	99.79
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	99.79
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	99.79
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	99.79
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	99.78
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	99.78
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	99.77
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	99.77
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	99.77
d1n2sa_	298	dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S	99.77
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	99.76
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	99.75
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	99.75
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	99.75
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	99.75
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	99.74
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	99.74
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	99.74
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	99.74
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	99.74
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	99.73
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	99.71
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	99.71
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	99.68
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	99.66
d1eq2a_	307	ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric	99.62
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	99.6
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	99.58
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	99.55
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.55
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	99.55
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	99.5
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	99.45
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	99.4
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	99.37
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.83
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.78
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.49
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.45
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.41
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.38
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.37
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.35
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	98.33
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.3
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.26
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	98.18
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.17
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.02
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.02
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.02
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	97.95
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.94
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	97.9
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	97.89
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.88
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	97.86
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.85
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	97.84
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.84
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.83
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.81
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.81
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.8
d1u7za_	223	Coenzyme A biosynthesis bifunctional protein CoaBC	97.8
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.8
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.79
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.77
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.77
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.76
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.76
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	97.75
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	97.71
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.69
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	97.67
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	97.66
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	97.65
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.64
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.61
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.59
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.56
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.55
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.53
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.52
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	97.5
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.45
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.39
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.37
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	97.34
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.28
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.27
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.26
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.25
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	97.25
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	97.23
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	97.18
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.16
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.15
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.12
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.1
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.09
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.09
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	97.05
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	97.03
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	97.03
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.96
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	96.93
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.86
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.85
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	96.84
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.82
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.82
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	96.82
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	96.81
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.8
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	96.78
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.74
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.73
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.73
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	96.72
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.68
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.68
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	96.68
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.65
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.64
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.64
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.63
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.6
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.6
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.58
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.56
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.55
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.53
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	96.52
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.51
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.5
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.48
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	96.45
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	96.44
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	96.42
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.4
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	96.4
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	96.3
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.3
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.29
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.27
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.27
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.27
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.24
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.2
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.2
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.17
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	96.16
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	96.14
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.11
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	96.08
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.08
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.08
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	96.07
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.05
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.98
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.93
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.89
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.84
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.82
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.77
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.76
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.75
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.72
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	95.67
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.61
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	95.59
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.45
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.44
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.32
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	95.28
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.24
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.16
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	95.14
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	95.07
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.96
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.9
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.85
d1r0ka2	150	1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z	94.82
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.78
d1q0qa2	151	1-deoxy-D-xylulose-5-phosphate reductoisomerase {E	94.76
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.71
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.64
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	94.55
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	94.45
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.39
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.35
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.31
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	94.24
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.24
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.23
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.21
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	94.18
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	94.12
d2vapa1	209	Cell-division protein FtsZ {Archaeon Methanococcus	94.07
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.05
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	94.05
d2blna2	203	Polymyxin resistance protein ArnA, N-terminal doma	94.03
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.99
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	93.91
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.85
d1p9oa_	290	Phosphopantothenoylcysteine synthetase {Human (Hom	93.85
d1xk7a1	402	Crotonobetainyl-CoA:carnitine CoA-transferase, Cai	93.81
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.52
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	93.5
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	93.4
d1x74a1	359	2-methylacyl-CoA racemase Mcr {Mycobacterium tuber	93.36
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.34
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	93.26
d2vjma1	427	Formyl-CoA transferase {Oxalobacter formigenes [Ta	93.25
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.17
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	92.95
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.92
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.92
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.87
d1q7ea_	417	Hypothetical protein YfdW {Escherichia coli [TaxId	92.86
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.83
d1rq2a1	198	Cell-division protein FtsZ {Mycobacterium tubercul	92.71
d1ofua1	198	Cell-division protein FtsZ {Pseudomonas aeruginosa	92.61
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.6
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	92.56
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	92.49
d1gsoa2	105	Glycinamide ribonucleotide synthetase (GAR-syn), N	92.27
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	92.16
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	92.12
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.05
d1fmta2	206	Methionyl-tRNAfmet formyltransferase {Escherichia	92.0
d2bw0a2	203	10-formyltetrahydrofolate dehydrogenase domain 1 {	91.98
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.59
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	91.45
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	91.36
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	91.21
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.16
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	91.13
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	90.74
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.53
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	90.52
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	90.47
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	90.46
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	90.43
d1f0ka_	351	Peptidoglycan biosynthesis glycosyltransferase Mur	89.77
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	89.56
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	89.46
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.4
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	89.36
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.3
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	89.13
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	89.08
d2bisa1	437	Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI	88.89
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	88.76
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	88.52
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	88.22
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	88.05
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.05
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	88.02
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	87.89
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	87.66
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.63
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	87.58
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	87.48
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.07
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	86.99
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	86.96
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	86.92
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	86.84
d3bswa1	193	Acetyltransferase PglD {Campylobacter jejuni [TaxI	86.81
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.81
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.58
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	86.47
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	86.23
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.98
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	85.9
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	85.85
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.8
d2csua3	163	Acetate-CoA ligase alpha chain, AcdA, domains 2 an	85.62
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.6
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	85.35
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.25
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	85.11
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	85.09
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	85.0
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	84.38
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	84.31
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.06
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	83.61
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	83.08
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	83.02
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	82.64
d1rzua_	477	Glycogen synthase 1, GlgA {Agrobacterium tumefacie	82.55
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	82.37
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	81.34
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	81.32
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	81.16
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	80.67
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	80.6
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	80.53
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	80.17
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	80.03

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=8.7e-26  Score=184.11  Aligned_cols=139  Identities=19%  Similarity=0.230  Sum_probs=111.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc----------ccccCCCceeEEEccCCCHhhHHHHhcC--cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----------LRDSWANNVIWHQGNLLSSDSWKEALDG--VT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~----------~~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d  123 (202)
                      .|+|||||||||||++|+++|+++|++|++++|.....          .......+++++++|++|.+++.+++++  +|
T Consensus         1 ~K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d   80 (357)
T d1db3a_           1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHYGDLSDTSNLTRILREVQPD   80 (357)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------CCEEECCCCSSCHHHHHHHHHHHCCS
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHHhhhhhcCCCeEEEEeecCCHHHHHHHHhccCCC
Confidence            37899999999999999999999999999999864310          1122346899999999999999999985  59


Q ss_pred             EeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCC---EEEEEec-cccCcCC----------cCCcchHHHH
Q 028890          124 AVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVK---RFVYISA-ADFGVAN----------YLLQGYYEGK  183 (202)
Q Consensus       124 ~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~---~~v~~SS-~~~~~~~----------~~~~~Y~~sK  183 (202)
                      +|||+|+..+      ++...+++|+.|+.+++++|++.+++   +|||+|| .+||.+.          .|.++|+.+|
T Consensus        81 ~v~h~aa~~~~~~~~~~~~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E~~~~~P~~~Y~~sK  160 (357)
T d1db3a_          81 EVYNLGAMSHVAVSFESPEYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAK  160 (357)
T ss_dssp             EEEECCCCCTTTTTTSCHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCTTSCCCCCSHHHHHH
T ss_pred             EEEEeecccccchhhhCHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCCCCCCCCCChHHHHH
Confidence            9999998643      23457789999999999999987653   7999999 6787432          3467899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .++|.+++.|.
T Consensus       161 ~~~E~~~~~~~  171 (357)
T d1db3a_         161 LYAYWITVNYR  171 (357)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=3e-25  Score=179.43  Aligned_cols=137  Identities=23%  Similarity=0.347  Sum_probs=114.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc------ccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      ||||||||+||||++|++.|+++|++|++++|-....      .......+++++++|++|.+.+.++++  ++|+|||+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~ViHl   80 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHF   80 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHHHTSCCEEEECCTTCHHHHHHHHHHTTCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhhcCCCCEEEEeecCCHHHHHHHHhccCCCEEEEC
Confidence            6899999999999999999999999999998743221      112234689999999999999999988  79999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------cCCcchHHHHHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------YLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------~~~~~Y~~sK~~~E~~~  190 (202)
                      |+...      ++...+++|+.|+.+++++|++.++++||++|| .+|+...           .+..+|+.+|.++|.++
T Consensus        81 Aa~~~~~~~~~~~~~~~~~Nv~gt~nlL~~~~~~~v~~~i~~Ss~~vy~~~~~~~~~e~~~~~~p~~~Y~~sK~~~e~~~  160 (338)
T d1udca_          81 AGLKAVGESVQKPLEYYDNNVNGTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL  160 (338)
T ss_dssp             CSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCSCCSSSBCTTSCCCCCSSHHHHHHHHHHHHH
T ss_pred             CCccchhhHHhCHHHHHHhHHHHHHHHHHHHHHhCCCEEEecCcceEEccccccccccccccCCCcchHHHHHhhhhHHH
Confidence            98643      334678999999999999999999999999999 5664321           34678999999999998


Q ss_pred             HHh
Q 028890          191 ACQ  193 (202)
Q Consensus       191 ~~~  193 (202)
                      .++
T Consensus       161 ~~~  163 (338)
T d1udca_         161 TDL  163 (338)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.7e-25  Score=177.53  Aligned_cols=138  Identities=19%  Similarity=0.241  Sum_probs=114.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc------ccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      |.||||||+||||++|+++|+++|++|+++++.....      .......+++++++|+.|.+.++.+++  ++|+|||+
T Consensus         2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   81 (347)
T d1z45a2           2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHF   81 (347)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTHHHHHHHHHHTSCCCEEECCTTCHHHHHHHHHHSCCCEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchhHHHhHHhhcccCCeEEEeecCCHHHHHHHHhccCCCEEEEc
Confidence            6799999999999999999999999999998643321      112235689999999999999998877  79999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC--------------CcCCcchHHHHHHHH
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA--------------NYLLQGYYEGKVLSS  187 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~--------------~~~~~~Y~~sK~~~E  187 (202)
                      |+...      .+...+.+|+.++.+++++|++.++++||++|| .+||..              ..+.++|+.+|.++|
T Consensus        82 Aa~~~~~~~~~~~~~~~~~N~~~t~~ll~~~~~~~i~~~i~~SS~~vyg~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E  161 (347)
T d1z45a2          82 AGLKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIE  161 (347)
T ss_dssp             CSCCCHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEGGGGCCGGGSTTCCSBCTTSCCCCCSHHHHHHHHHH
T ss_pred             cccccccccccCcccccccchhhhHHHHHHHHhcccceEEeecceeeecCcccCCCCCccccccCCCCCChhHhHHHHHH
Confidence            99654      234567899999999999999999999999999 677632              124567999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      ++++.|.
T Consensus       162 ~~~~~~~  168 (347)
T d1z45a2         162 NILNDLY  168 (347)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998763

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=4.7e-24  Score=173.68  Aligned_cols=144  Identities=21%  Similarity=0.259  Sum_probs=118.6

Q ss_pred             CCCCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           50 NVPPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        50 ~~~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ...+.++||||||||+||||++|+++|+++||+|+++++....... .......+..+|+.+.+.+.++++++|+|||+|
T Consensus         9 ~~~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1           9 QYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT-EDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             CSCTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC-GGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CcCCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchh-hhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            3446688999999999999999999999999999999876544222 222456888899999999999999999999999


Q ss_pred             ccCC-------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC-----------------CcCCcchHHHHH
Q 028890          130 GGFG-------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA-----------------NYLLQGYYEGKV  184 (202)
Q Consensus       130 ~~~~-------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~-----------------~~~~~~Y~~sK~  184 (202)
                      +...       .+...+..|+.++.+++++|++.++++||++|| ..|+..                 ..|.++|+.+|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~n~~gt~~ll~~~~~~~vk~~i~~SS~~~~~~~~~~~~~~~~~~~~e~~~~~p~~~Yg~sK~  167 (363)
T d2c5aa1          88 ADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAFGLEKL  167 (363)
T ss_dssp             CCCCCHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEGGGSCGGGSSSSSSCEECGGGGSSBCCSSHHHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHhHHhhCccccccccccccccccccccccccccccccCCcCCCCCHHHHHHH
Confidence            8643       234567889999999999999999999999999 556532                 134568999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      ++|++++.|.
T Consensus       168 ~~E~~~~~~~  177 (363)
T d2c5aa1         168 ATEELCKHYN  177 (363)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999999875

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.3e-24  Score=159.44  Aligned_cols=136  Identities=18%  Similarity=0.186  Sum_probs=114.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      .++||+||||||+||++++++|+++||+|++++|++.+. ......+++++.+|+.|++++.++++++|+|||++|... 
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~-~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~~~-   79 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-PSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTRN-   79 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS-CSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCTT-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc-ccccccccccccccccchhhHHHHhcCCCEEEEEeccCC-
Confidence            478999999999999999999999999999999987653 233456899999999999999999999999999998754 


Q ss_pred             CccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc---CCcchHHHHHHHHHHHHH
Q 028890          135 NSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY---LLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       135 ~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~---~~~~Y~~sK~~~E~~~~~  192 (202)
                      .....+++..++.++++++++++++|||++|| ..++....   ....|...|..+|+++++
T Consensus        80 ~~~~~~~~~~~~~~l~~aa~~~~v~r~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~  141 (205)
T d1hdoa_          80 DLSPTTVMSEGARNIVAAMKAHGVDKVVACTSAFLLWDPTKVPPRLQAVTDDHIRMHKVLRE  141 (205)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSCTTCSCGGGHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHHHHHhcCCCeEEEEeeeeccCCCccccccccccchHHHHHHHHHHh
Confidence            33445678899999999999999999999998 44443332   234688999999999886

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=8.7e-24  Score=170.76  Aligned_cols=138  Identities=19%  Similarity=0.253  Sum_probs=110.0

Q ss_pred             CeE-EEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----------ccccCCCceeEEEccCCCHhhHHHHhc--Cc
Q 028890           57 EKL-LVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------LRDSWANNVIWHQGNLLSSDSWKEALD--GV  122 (202)
Q Consensus        57 ~~v-lVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----------~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~  122 (202)
                      ||| |||||+||||++|+++|+++||+|++++|.....           .......+++++.+|+.|++.+.+++.  ++
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~   80 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIEGNMKLHYGDLTDSTCLVKIINEVKP   80 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTGGGC---------CEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhhHHHHhhchhhhccCCcEEEEeecCCchhhHHHHhhccc
Confidence            577 9999999999999999999999999999965421           011123578999999999999999886  46


Q ss_pred             cEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCC---CEEEEEec-cccCcCC----------cCCcchHHH
Q 028890          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGV---KRFVYISA-ADFGVAN----------YLLQGYYEG  182 (202)
Q Consensus       123 d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~---~~~v~~SS-~~~~~~~----------~~~~~Y~~s  182 (202)
                      ++++|+++...      .+...+++|+.|+.++++++++.++   ++|||+|| .+||.+.          .|.++|+.+
T Consensus        81 ~~v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~P~~~Yg~s  160 (347)
T d1t2aa_          81 TEIYNLGAQSHVKISFDLAEYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQKETTPFYPRSPYGAA  160 (347)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBCTTSCCCCCSHHHHH
T ss_pred             ceeeeeeeccccchhhccchhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCCCCCCCCCCCHHHHH
Confidence            79999988543      3345678999999999999998765   48999999 7787432          345789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.++|++++.|.
T Consensus       161 K~~aE~~~~~~~  172 (347)
T d1t2aa_         161 KLYAYWIVVNFR  172 (347)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999998863

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.90  E-value=2.8e-23  Score=169.42  Aligned_cols=138  Identities=17%  Similarity=0.186  Sum_probs=109.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEE-EecCCCCc-----ccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVAS-LSRSGRSS-----LRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~-l~r~~~~~-----~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      |+||||||+||||++|+++|+++|++|++ +++.....     .......+++++++|++|++.+.++++  ++|+|||+
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~~d~Vihl   80 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLSDISESNRYNFEHADICDSAEITRIFEQYQPDAVMHL   80 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCGGGGTTTTTCTTEEEEECCTTCHHHHHHHHHHHCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHhhhhcCCcEEEEccCCCHHHHHHHHHhCCCCEEEEC
Confidence            58999999999999999999999997544 54432211     111224589999999999999998887  58999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcC---------CCEEEEEec-cccCcC--------------------
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKG---------VKRFVYISA-ADFGVA--------------------  172 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~---------~~~~v~~SS-~~~~~~--------------------  172 (202)
                      |+..+      ++...+++|+.|+.+++++|++.+         +++||++|| .+||..                    
T Consensus        81 Aa~~~~~~~~~~p~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~~~~~~~~~~~e~~~  160 (361)
T d1kewa_          81 AAESHVDRSITGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA  160 (361)
T ss_dssp             CSCCCHHHHHHCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCCCCGGGSCTTSCCCCBCTTSC
T ss_pred             ccccchhhHHhCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCCccCCccccccCCCCcccCCC
Confidence            99754      456688999999999999998754         459999999 677632                    


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ..|.+.|+.+|.++|.+++.|.
T Consensus       161 ~~p~s~Yg~sK~~~E~~~~~~~  182 (361)
T d1kewa_         161 YAPSSPYSASKASSDHLVRAWR  182 (361)
T ss_dssp             CCCCSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHH
Confidence            1234679999999999999864

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-24  Score=172.37  Aligned_cols=133  Identities=20%  Similarity=0.237  Sum_probs=102.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc----cCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD----SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~----~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +|||+||||+||||++|+++|+++|++|++++|........    .....+++...|+     ++.++.++|+|||+|+.
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~-----~~~~~~~~d~VihlAa~   75 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDV-----VEPLYIEVDQIYHLASP   75 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCT-----TSCCCCCCSEEEECCSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHH-----HHHHHcCCCEEEECccc
Confidence            47999999999999999999999999999998743321111    1123445554444     44456689999999986


Q ss_pred             CC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC---------------cCCcchHHHHHHHHHH
Q 028890          132 FG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN---------------YLLQGYYEGKVLSSDV  189 (202)
Q Consensus       132 ~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~---------------~~~~~Y~~sK~~~E~~  189 (202)
                      ..      ++...+++|+.|+.+++++|++.++ ++||+|| ++|+.+.               .|.++|+.+|.++|.+
T Consensus        76 ~~~~~~~~~~~~~~~~Nv~g~~~ll~~~~~~~~-k~I~~SS~~vy~~~~~~~~~e~~~~~~~~~~p~~~Y~~sK~~~E~~  154 (312)
T d2b69a1          76 ASPPNYMYNPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAETM  154 (312)
T ss_dssp             CSHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGGBSCSSSSBCTTCCCBCCSSSTTHHHHHHHHHHHHH
T ss_pred             CCchhHHhCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEChheecCCCCCCCCccccCCCCCCCCccHHHHHHHHHHHH
Confidence            43      3445789999999999999999886 8999999 6776421               2456799999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      ++.|.
T Consensus       155 ~~~~~  159 (312)
T d2b69a1         155 CYAYM  159 (312)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98875

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=99.90  E-value=5.4e-23  Score=166.49  Aligned_cols=139  Identities=17%  Similarity=0.183  Sum_probs=112.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC------cccccCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS------SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~------~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      .||+|||||||||||++|+++|+++|++|.++.++...      ........+++++.+|+.|.+.+..+++++|.|+|+
T Consensus         1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~~~~~~~~~~~~i~~~~~Di~d~~~~~~~~~~~~~v~~~   80 (346)
T d1oc2a_           1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILGDRVELVVGDIADAELVDKLAAKADAIVHY   80 (346)
T ss_dssp             CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCGGGTGGGCSSSEEEEECCTTCHHHHHHHHTTCSEEEEC
T ss_pred             CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCccccHHHHHHhhcCCeEEEEccCCCHHHHHHHHhhhhhhhhh
Confidence            47899999999999999999999999977666554211      112233568999999999999999999999999999


Q ss_pred             cccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------------------CcCCcch
Q 028890          129 VGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------------------NYLLQGY  179 (202)
Q Consensus       129 a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------------------~~~~~~Y  179 (202)
                      |+...      ++...+++|+.|+.++++++.+.+. ++|++|| ++||..                      ..|.+.|
T Consensus        81 a~~~~~~~~~~~~~~~~~~N~~g~~nll~~~~~~~~-k~i~~ss~~vyg~~~~~~~~~~~~~~~~~~~~e~~~~~p~s~Y  159 (346)
T d1oc2a_          81 AAESHNDNSLNDPSPFIHTNFIGTYTLLEAARKYDI-RFHHVSTDEVYGDLPLREDLPGHGEGPGEKFTAETNYNPSSPY  159 (346)
T ss_dssp             CSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGGCCBCCGGGSTTTTCSTTSSBCTTSCCCCCSHH
T ss_pred             hhcccccchhhCcccceeeehHhHHhhhhhhccccc-cccccccceEecccCccccccccccCcccccccCCCCCCCCHH
Confidence            98643      4567889999999999999999885 7888887 667531                      1235679


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.++|.+++.|.
T Consensus       160 ~~sK~~~E~~~~~~~  174 (346)
T d1oc2a_         160 SSTKAASDLIVKAWV  174 (346)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.9e-23  Score=159.61  Aligned_cols=137  Identities=18%  Similarity=0.235  Sum_probs=114.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ++++|+||||||+||++++++|+++|.  +|++++|++.... .....++.+..+|+.+.+++.++++++|++|||+|..
T Consensus        13 ~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~-~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~~   91 (232)
T d2bkaa1          13 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFD-EEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   91 (232)
T ss_dssp             TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCC-SGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhc-ccccceeeeeeeccccccccccccccccccccccccc
Confidence            567999999999999999999999995  8999999875532 2334678888999999999999999999999999864


Q ss_pred             C---CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 G---SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~---~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .   .....+++|+.++.+++++|++.++++||++|+.  +....+.+.|+.+|+.+|+.++++.
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~fi~~Ss~--~~~~~~~~~Y~~~K~~~E~~l~~~~  154 (232)
T d2bkaa1          92 RGKAGAEGFVRVDRDYVLKSAELAKAGGCKHFNLLSSK--GADKSSNFLYLQVKGEVEAKVEELK  154 (232)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT--TCCTTCSSHHHHHHHHHHHHHHTTC
T ss_pred             ccccchhhhhhhcccccceeeecccccCccccccCCcc--ccccCccchhHHHHHHhhhcccccc
Confidence            3   2345678999999999999999999999999993  2333445789999999999998754

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.89  E-value=8.4e-23  Score=164.94  Aligned_cols=140  Identities=21%  Similarity=0.228  Sum_probs=117.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----------cccCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----------RDSWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----------~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ++|+||||||+||||++|+++|+++|++|++++|......          ......+++++.+|..|...+......+++
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~   94 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGVDY   94 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHHHHTTCSE
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHHhhhhcccCCeeEEeeccccccccccccccccc
Confidence            5679999999999999999999999999999997543211          111235789999999999999999999999


Q ss_pred             eEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHH
Q 028890          125 VISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSS  187 (202)
Q Consensus       125 vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E  187 (202)
                      ++|+++...      ++...+++|+.|+.+++++|.+.++++|||+|| .+||..          ..|.+.|+.+|.++|
T Consensus        95 v~~~~a~~~~~~~~~~~~~~~~~Nv~gt~~ll~~~~~~~~~~~i~~SS~~vyg~~~~~~~~E~~~~~p~~~Y~~sK~~~E  174 (341)
T d1sb8a_          95 VLHQAALGSVPRSINDPITSNATNIDGFLNMLIAARDAKVQSFTYAASSSTYGDHPGLPKVEDTIGKPLSPYAVTKYVNE  174 (341)
T ss_dssp             EEECCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHTTCSEEEEEEEGGGGTTCCCSSBCTTCCCCCCSHHHHHHHHHH
T ss_pred             cccccccccccccccCccchhheeehhHHHHHHHHHhcCCceEEEcccceeeCCCCCCCccCCCCCCCCCcchHHHHHHH
Confidence            999998543      345678999999999999999999999999999 677643          235678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      ++++.|.
T Consensus       175 ~~~~~~~  181 (341)
T d1sb8a_         175 LYADVFS  181 (341)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-22  Score=162.86  Aligned_cols=138  Identities=23%  Similarity=0.343  Sum_probs=112.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----c-------cccCCCceeEEEccCCCHhhHHHHhcC--
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----L-------RDSWANNVIWHQGNLLSSDSWKEALDG--  121 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~--  121 (202)
                      .||||||||+||||++|+++|+++|++|+++++.....     .       ......++.++.+|++|.+.+.+++.+  
T Consensus         2 ~kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~~   81 (346)
T d1ek6a_           2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEFEEMDILDQGALQRLFKKYS   81 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSSSSBHHHHHHHHHHTCCCEEEECCTTCHHHHHHHHHHCC
T ss_pred             CCeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccccccccchHHHHHHHHhcCCCcEEEEeeccccccccccccccc
Confidence            47999999999999999999999999999997532110     0       012246899999999999999988764  


Q ss_pred             ccEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC-----------CcCCcchHHHH
Q 028890          122 VTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA-----------NYLLQGYYEGK  183 (202)
Q Consensus       122 ~d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~-----------~~~~~~Y~~sK  183 (202)
                      +++++|+|+..+      ++...+++|+.|+.++++++++.++++|+|+|| .+|+..           ..+.++|+.+|
T Consensus        82 ~~~i~h~Aa~~~~~~~~~~p~~~~~~Nv~gt~~l~~~~~~~~v~~~i~~ss~~~~~~~~~~~~~~~~~~~~~~~~Y~~~k  161 (346)
T d1ek6a_          82 FMAVIHFAGLKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSK  161 (346)
T ss_dssp             EEEEEECCSCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGGCSCSSSSBCTTSCCCCCSSHHHHHH
T ss_pred             cccccccccccCcHhhHhCHHHHHHhhhcccccccchhhhcCcccccccccceeeeccccccccccccccccCChHHHHH
Confidence            678999999654      345678999999999999999999999999999 455432           23456899999


Q ss_pred             HHHHHHHHHh
Q 028890          184 VLSSDVAACQ  193 (202)
Q Consensus       184 ~~~E~~~~~~  193 (202)
                      ..+|+.++.+
T Consensus       162 ~~~e~~~~~~  171 (346)
T d1ek6a_         162 FFIEEMIRDL  171 (346)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988875

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=7e-23  Score=165.30  Aligned_cols=137  Identities=20%  Similarity=0.264  Sum_probs=109.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHH-HhcCccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKE-ALDGVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~d~vi~~a~~~~-  133 (202)
                      ||||||||+||||++|+++|+++|+ +|+++++...........++++++.+|+++.+.+.+ +++++|+|||+|+... 
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~~~~~~~~~~i~~Di~~~~~~~~~~~~~~d~Vih~a~~~~~   80 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHPHFHFVEGDISIHSEWIEYHVKKCDVVLPLVAIATP   80 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGGGTTCTTEEEEECCTTTCSHHHHHHHHHCSEEEECBCCCCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhhhccCCCeEEEECccCChHHHHHHHHhCCCccccccccccc
Confidence            5899999999999999999999995 899998865543333445789999999988766554 7778999999999754 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC-----------------cCCcchHHHHHHHHHHH
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN-----------------YLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~-----------------~~~~~Y~~sK~~~E~~~  190 (202)
                           .+...+++|+.|+.+++++|.+.+. +++++|| ..|+...                 .|...|+.+|.++|+++
T Consensus        81 ~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~-~~~~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~Y~~sK~~~E~~~  159 (342)
T d2blla1          81 IEYTRNPLRVFELDFEENLRIIRYCVKYRK-RIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRWIYSVSKQLLDRVI  159 (342)
T ss_dssp             HHHHHSHHHHHHHHTHHHHHHHHHHHHTTC-EEEEECCGGGGBTCCCSSBCTTTCCCBCCCTTCGGGHHHHHHHHHHHHH
T ss_pred             cccccCCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccCCCcchhhhcccchhhhh
Confidence                 2345688999999999999999886 5567777 5555321                 23356999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.|.
T Consensus       160 ~~~~  163 (342)
T d2blla1         160 WAYG  163 (342)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            8874

>d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.88  E-value=1.1e-22  Score=163.22  Aligned_cols=138  Identities=23%  Similarity=0.289  Sum_probs=111.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEE------EecCCCC---c--ccccCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVAS------LSRSGRS---S--LRDSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~------l~r~~~~---~--~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |||+||||+||||++|+++|+++|++|++      +++....   .  .......+++++.+|..+...+......+|+|
T Consensus         1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~v   80 (322)
T d1r6da_           1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNRANLAPVDADPRLRFVHGDIRDAGLLARELRGVDAI   80 (322)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCGGGGGGGTTCTTEEEEECCTTCHHHHHHHTTTCCEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccHhHhhhhhcCCCeEEEEeccccchhhhccccccceE
Confidence            68999999999999999999999986544      3322111   1  11223468999999999999999999999999


Q ss_pred             EEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCC----------cCCcchHHHHHHHHH
Q 028890          126 ISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVAN----------YLLQGYYEGKVLSSD  188 (202)
Q Consensus       126 i~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~----------~~~~~Y~~sK~~~E~  188 (202)
                      +|+|+...      .....+++|+.|+.+++++|.+.++++|||+|| .+|+...          .|.+.|+.+|.++|.
T Consensus        81 i~~a~~~~~~~~~~~~~~~~~~N~~gt~~ll~~~~~~~~~~~I~~Ss~~~yg~~~~~~~~E~~~~~p~~~Y~~sK~~~E~  160 (322)
T d1r6da_          81 VHFAAESHVDRSIAGASVFTETNVQGTQTLLQCAVDAGVGRVVHVSTNQVYGSIDSGSWTESSPLEPNSPYAASKAGSDL  160 (322)
T ss_dssp             EECCSCCCHHHHHHCCHHHHHHHTHHHHHHHHHHHHTTCCEEEEEEEGGGGCCCSSSCBCTTSCCCCCSHHHHHHHHHHH
T ss_pred             EeecccccccccccchHHHhhhhHHHHHHHHHHHHHcCCceEEEeecceeecCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence            99998643      355678899999999999999999999999999 6776432          345789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +++.|.
T Consensus       161 ~~~~~~  166 (322)
T d1r6da_         161 VARAYH  166 (322)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999874

>d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase)
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.8e-22  Score=161.08  Aligned_cols=124  Identities=19%  Similarity=0.251  Sum_probs=102.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~  133 (202)
                      +|||+|||||||||++|+++|+++|+.|+++++...               +|+.|.+.+.++++  .+|+|+|+|+...
T Consensus         2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~~---------------~~~~~~~~~~~~~~~~~~d~v~~~a~~~~   66 (315)
T d1e6ua_           2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE---------------LNLLDSRAVHDFFASERIDQVYLAAAKVG   66 (315)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTTT---------------CCTTCHHHHHHHHHHHCCSEEEECCCCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCchh---------------ccccCHHHHHHHHhhcCCCEEEEcchhcc
Confidence            579999999999999999999999999887654321               48889999988876  4899999997643


Q ss_pred             -------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcCCc---------------CCcchHHHHHHHHHHH
Q 028890          134 -------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVANY---------------LLQGYYEGKVLSSDVA  190 (202)
Q Consensus       134 -------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~~~---------------~~~~Y~~sK~~~E~~~  190 (202)
                             +....+++|+.|+.+++++|++.++++|||+|| ++||....               +.++|+.+|.++|+++
T Consensus        67 ~~~~~~~~~~~~~~~Nv~gt~~ll~~a~~~~v~~~i~~SS~~vyg~~~~~~~~E~~~~~~~~~~~~~~Y~~sK~~~E~~~  146 (315)
T d1e6ua_          67 GIVANNTYPADFIYQNMMIESNIIHAAHQNDVNKLLFLGSSCIYPKLAKQPMAESELLQGTLEPTNEPYAIAKIAGIKLC  146 (315)
T ss_dssp             CHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECCGGGSCTTCCSSBCGGGTTSSCCCGGGHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEEECCceEcCCCCCCCccCCccccCCCCCCCCHHHHHHHHHHHHH
Confidence                   234467899999999999999999999999999 77774321               1246999999999999


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.|.
T Consensus       147 ~~~~  150 (315)
T d1e6ua_         147 ESYN  150 (315)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9875

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=99.88  E-value=5.7e-23  Score=166.24  Aligned_cols=141  Identities=24%  Similarity=0.252  Sum_probs=111.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +++++||||||+||||++|+++|+++|++|++++|+..+...       ........++.+|+.|.+++.+++.++|+|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            468999999999999999999999999999999997533110       1112334567899999999999999999999


Q ss_pred             EccccCCC---CccchhhhHHHHHHHHHHHHHc-CCCEEEEEecc-c-cCcC----------------------------
Q 028890          127 SCVGGFGS---NSYMYKINGTANINAIRAASEK-GVKRFVYISAA-D-FGVA----------------------------  172 (202)
Q Consensus       127 ~~a~~~~~---~~~~~~~n~~~~~~~~~~~~~~-~~~~~v~~SS~-~-~~~~----------------------------  172 (202)
                      |+++....   +...++.|+.|+.+++++|.+. ++++|||+||. . ++..                            
T Consensus        89 ~~a~~~~~~~~~~~~~~~nv~gt~~ll~~~~~~~~v~~~i~~SS~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~e~~  168 (342)
T d1y1pa1          89 HIASVVSFSNKYDEVVTPAIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWNLESIDKAKTLPESD  168 (342)
T ss_dssp             ECCCCCSCCSCHHHHHHHHHHHHHHHHHHHHTCTTCCEEEEECCGGGTCCCCTTCCCCEECTTCCCHHHHHHHHHSCTTS
T ss_pred             hhcccccccccccccccchhhhHHHHHHhhhcccccccccccccceeeccCCCCCCCccccccccccccccccccccccC
Confidence            99997542   3456678999999999999886 68999999993 2 2110                            


Q ss_pred             -CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 -NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 -~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                       ..+..+|+.+|..+|.+++.|.
T Consensus       169 ~~~p~~~Y~~sK~~~E~~~~~~~  191 (342)
T d1y1pa1         169 PQKSLWVYAASKTEAELAAWKFM  191 (342)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCcccchhHhHHHHHHHhh
Confidence             1123569999999999988774

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=4e-22  Score=153.79  Aligned_cols=137  Identities=20%  Similarity=0.181  Sum_probs=109.4

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      ++.++|+++||||+++||+++++.|+++|++|++++|+.+..      .++..+++|++|+++++++++       ++|+
T Consensus         3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   76 (237)
T d1uzma1           3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP------KGLFGVEVDVTDSDAVDRAFTAVEEHQGPVEV   76 (237)
T ss_dssp             CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC------TTSEEEECCTTCHHHHHHHHHHHHHHHSSCSE
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchh------cCceEEEEecCCHHHHHHHHHHHHHhcCCceE
Confidence            456899999999999999999999999999999999986542      467889999999998887765       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHH----HHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRA----ASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~----~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||...          +|+..+++|+.++..+.++    +++.+.+++|++||.....+......|+.+|++.+.+.
T Consensus        77 LVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt  156 (237)
T d1uzma1          77 LVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFGRMIFIGSVSGLWGIGNQANYAASKAGVIGMA  156 (237)
T ss_dssp             EEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCCC-----CCHHHHHHHHHHHHHH
T ss_pred             EEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCCceEEEcchhhccCCcccHHHHHHHHHHHHHH
Confidence            999999643          2456789999998877654    45566679999999433334455678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       157 ~~lA  160 (237)
T d1uzma1         157 RSIA  160 (237)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=99.87  E-value=4e-22  Score=159.73  Aligned_cols=136  Identities=18%  Similarity=0.230  Sum_probs=108.1

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhcC--ccEeEEccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCVG  130 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a~  130 (202)
                      |||||||+||||++|+++|+++|++|+++++-.....     ......+++++.+|+.|.+.+.+++++  +|+|||+|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~~~~~~~i~~Di~~~~~l~~~~~~~~~d~Vih~aa   81 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSSLGNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAG   81 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhccCCcEEEEcccCCHHHHHHHHHhcCCceEEeecc
Confidence            7999999999999999999999999999875322211     112246899999999999999999875  599999999


Q ss_pred             cCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-ccc-CcC--------------------------CcCC
Q 028890          131 GFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADF-GVA--------------------------NYLL  176 (202)
Q Consensus       131 ~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~-~~~--------------------------~~~~  176 (202)
                      ...      ++...+++|+.|+.++++++.+.++++++++|| ..+ +..                          ..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (338)
T d1orra_          82 QVAMTTSIDNPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFH  161 (338)
T ss_dssp             CCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSSCEEETTCTTCBCTTSCCCCC
T ss_pred             cccccccccChHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccCcccCCccccc
Confidence            754      345678899999999999999999887777776 322 211                          1234


Q ss_pred             cchHHHHHHHHHHHHHh
Q 028890          177 QGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       177 ~~Y~~sK~~~E~~~~~~  193 (202)
                      +.|+.+|...|.++..+
T Consensus       162 ~~y~~~k~~~e~~~~~~  178 (338)
T d1orra_         162 SPYGCSKGAADQYMLDY  178 (338)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhhhhh
Confidence            67999999999987765

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.87  E-value=1.2e-21  Score=160.43  Aligned_cols=139  Identities=18%  Similarity=0.223  Sum_probs=110.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHH-CCCeEEEEecCCC---C-------------------cccccCCCceeEEEccCCCH
Q 028890           56 SEKLLVLGGNGFVGSHICREALD-RGLTVASLSRSGR---S-------------------SLRDSWANNVIWHQGNLLSS  112 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~-~g~~V~~l~r~~~---~-------------------~~~~~~~~~~~~~~~D~~~~  112 (202)
                      .||||||||+||||++|+++|++ .|++|+++++-..   .                   ........++.++.+|+.|.
T Consensus         2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~   81 (383)
T d1gy8a_           2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPKPPWADRYAALEVGDVRNE   81 (383)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCCTTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESCTTCH
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccchhhhhhhhHHHHhhhhccccccccccceEEEECcccCH
Confidence            46999999999999999999997 6899999974110   0                   00111234688999999999


Q ss_pred             hhHHHHhc---CccEeEEccccCC------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------
Q 028890          113 DSWKEALD---GVTAVISCVGGFG------SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------  172 (202)
Q Consensus       113 ~~~~~~~~---~~d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------  172 (202)
                      +.++++++   ++|+|||+|+...      .+...+++|+.++.++++++++.++++++++|| ..|+..          
T Consensus        82 ~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~~~~~~~N~~~t~~~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~  161 (383)
T d1gy8a_          82 DFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAE  161 (383)
T ss_dssp             HHHHHHHHHSCCCCEEEECCCCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGTBSCCC-----CCC
T ss_pred             HHhhhhhhccceeehhhcccccccccccccccccccccccccccccchhhhccCCccccccccccccccccccccccccc
Confidence            99998885   5799999999654      234567899999999999999999999999998 444321          


Q ss_pred             -------CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 -------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 -------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                             ..|.++|+.+|..+|.+++.|.
T Consensus       162 ~~~e~~~~~p~~~Y~~sK~~~e~~~~~~~  190 (383)
T d1gy8a_         162 PIDINAKKSPESPYGESKLIAERMIRDCA  190 (383)
T ss_dssp             CBCTTSCCBCSSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHhhHhHHHHHHHHHH
Confidence                   2346789999999999999875

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.87  E-value=7.8e-22  Score=157.55  Aligned_cols=138  Identities=18%  Similarity=0.178  Sum_probs=110.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhcC--ccEeEEcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALDG--VTAVISCV  129 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~~--~d~vi~~a  129 (202)
                      |+||||||+||||++|+++|+++||+|++++|.......     ....++++++.+|+.|.+.+.+.+..  .++++|++
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~~~~a   80 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLA   80 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCHHHHHTTCGGGEEEEECCTTCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccHHHHHHhcccCCcEEEEccccChHHhhhhhcccccccccccc
Confidence            689999999999999999999999999999997644221     11235799999999999999887764  67888888


Q ss_pred             ccCC------CCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHH
Q 028890          130 GGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       130 ~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~  191 (202)
                      +...      .+...++.|+.|+.+++++|++.+.+ +|++.|| ..|+..          ..+.++|+.+|.++|++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~~~~~p~~~Y~~sK~~~E~~~~  160 (321)
T d1rpna_          81 AQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITV  160 (321)
T ss_dssp             SCCCHHHHTTSHHHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTTSCCCCCSHHHHHHHHHHHHHH
T ss_pred             ccccccccccchHHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCCCCccccChhHHHHHHHHHHHH
Confidence            7543      33456889999999999999998865 6777777 444422          2356789999999999998


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .|.
T Consensus       161 ~~~  163 (321)
T d1rpna_         161 NYR  163 (321)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.87  E-value=1.1e-22  Score=167.10  Aligned_cols=139  Identities=17%  Similarity=0.228  Sum_probs=106.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEec---C-------CC---C--cc-------cccCCCceeEEEccCCCHh
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSR---S-------GR---S--SL-------RDSWANNVIWHQGNLLSSD  113 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r---~-------~~---~--~~-------~~~~~~~~~~~~~D~~~~~  113 (202)
                      +||||||||+||||++|+++|+++||+|++++.   .       ..   .  ..       ......+++++.+|+.|.+
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~   80 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE   80 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence            589999999999999999999999999999861   0       00   0  00       0112467899999999999


Q ss_pred             hHHHHhc--CccEeEEccccCCC---------CccchhhhHHHHHHHHHHHHHcCCC-EEEEEec-cccCc---------
Q 028890          114 SWKEALD--GVTAVISCVGGFGS---------NSYMYKINGTANINAIRAASEKGVK-RFVYISA-ADFGV---------  171 (202)
Q Consensus       114 ~~~~~~~--~~d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS-~~~~~---------  171 (202)
                      .+.++++  ++|+|||+|+....         +...+++|+.|+.+++++|++.+++ ++++.|| ..|+.         
T Consensus        81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~  160 (393)
T d1i24a_          81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY  160 (393)
T ss_dssp             HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred             HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccccc
Confidence            9999987  46999999985431         1245789999999999999998876 5666666 34432         


Q ss_pred             --------------CCcCCcchHHHHHHHHHHHHHhc
Q 028890          172 --------------ANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       172 --------------~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                                    +..+.++|+.+|.++|.+++.|.
T Consensus       161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~  197 (393)
T d1i24a_         161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTC  197 (393)
T ss_dssp             EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccHHHHHhhhhcccccccc
Confidence                          12345679999999999998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=99.86  E-value=1.4e-21  Score=151.55  Aligned_cols=141  Identities=11%  Similarity=0.115  Sum_probs=113.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc---ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR---DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      .++|+++||||+++||+++++.|+++|++|++.+|++.+...   .....++..+.+|++|+++++++++       ++|
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999999999999999999999999999998654211   2234678999999999998888765       589


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++|||||...          +|+..+++|+.++..+.+++    ++++-+++|++||.....+.+....|+.+|++.+.+
T Consensus        83 ilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~l  162 (247)
T d2ew8a1          83 ILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWGRIINLTSTTYWLKIEAYTHYISTKAANIGF  162 (247)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGGSCCSSCHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCCCccccccchhcccCcccccchhhhccHHHH
Confidence            9999999643          24567899999998777765    455667999999943334445567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       163 tk~lA  167 (247)
T d2ew8a1         163 TRALA  167 (247)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.86  E-value=7.3e-22  Score=152.86  Aligned_cols=142  Identities=19%  Similarity=0.229  Sum_probs=112.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ..++|+++||||+++||+++++.|+++|++|++++|++++..  ......++.++++|++|+++++++++       ++|
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            357899999999999999999999999999999999865421  12224578899999999998887765       589


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++|||||...          +|...+++|+.+++.+.+++    ++.+-+++|++||.....+......|+.+|++.+.+
T Consensus        83 ilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~l  162 (244)
T d1nffa_          83 VLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGL  162 (244)
T ss_dssp             EEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred             EEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcceEEeccccccccccccccchhhHHHHHHHH
Confidence            9999999643          24567899999998777755    445557999999943334445567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       163 tk~lA  167 (244)
T d1nffa_         163 TKSTA  167 (244)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=99.86  E-value=1.2e-21  Score=152.43  Aligned_cols=141  Identities=15%  Similarity=0.184  Sum_probs=112.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+++||++++++|+++|++|++++|+.++...  .....++.++++|++|+++++++++       ++|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCccE
Confidence            478999999999999999999999999999999998644211  2224578999999999999888775       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||...          +|...+++|+.++..+.+++    ++.+.+++|++||...-.+......|+.+|.+.+.+.
T Consensus        83 lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt  162 (254)
T d1hdca_          83 LVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGGSIVNISSAAGLMGLALTSSYGASKWGVRGLS  162 (254)
T ss_dssp             EEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHH
T ss_pred             EEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCCeecccccchhcccccchhhHHHHHHHHHHHH
Confidence            999999643          23467899999998877765    4456679999999433334445678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       163 ~~lA  166 (254)
T d1hdca_         163 KLAA  166 (254)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.86  E-value=1.6e-21  Score=151.50  Aligned_cols=142  Identities=15%  Similarity=0.151  Sum_probs=112.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      +.++|+++||||+++||+++++.|+++|++|++++|+.++..      ......++.++.+|++|+++++++++      
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            357899999999999999999999999999999999864411      12224578899999999998887765      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccC-cCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFG-VANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~-~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||...          +|+..+++|+.+++.+.+++    ++.+-+++|++||.... .+......|+.+|.
T Consensus        82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~S~~~~~~~~~~~~~Y~asKa  161 (251)
T d1vl8a_          82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIGSLTVEEVTMPNISAYAASKG  161 (251)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEECCGGGTCCCSSSCHHHHHHHH
T ss_pred             CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccccchhccccCccccchHHHHH
Confidence             5899999999643          23567889999998887765    34555799999984333 34445678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       162 al~~lt~~lA  171 (251)
T d1vl8a_         162 GVASLTKALA  171 (251)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            9999988764

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=1.4e-21  Score=151.56  Aligned_cols=140  Identities=16%  Similarity=0.070  Sum_probs=110.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+++.. +.....+..++++|++|+++++++++       ++|++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~~-~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEGK-EVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTHH-HHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            5789999999999999999999999999999999986542 11112356788999999998887765       589999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          +|+..+++|+.+++++.+++    ++++-+++|++||.....+.+....|+.+|++.+.+.+.
T Consensus        82 nnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal~~ltk~  161 (248)
T d2d1ya1          82 NNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVASVQGLFAEQENAAYNASKGGLVNLTRS  161 (248)
T ss_dssp             ECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSBCTTBHHHHHHHHHHHHHHHH
T ss_pred             EeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence            9999643          23567899999999887776    345556999999943333445567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       162 lA  163 (248)
T d2d1ya1         162 LA  163 (248)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=5.4e-22  Score=153.58  Aligned_cols=141  Identities=17%  Similarity=0.085  Sum_probs=111.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+++...  ......+...+.+|++|+++++++++       ++|+
T Consensus         2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (243)
T d1q7ba_           2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVDI   81 (243)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCSE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcce
Confidence            47899999999999999999999999999999999864321  11223578889999999998887775       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      +|||||...          .|...+++|+.++..+.+++    ++++-+++|++||.....+......|+.+|++.+.+.
T Consensus        82 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal~~lt  161 (243)
T d1q7ba_          82 LVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHGRIITIGSVVGTMGNGGQANYAAAKAGLIGFS  161 (243)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred             ehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCCEeeeecchhhcCCCCCCHHHHHHHHHHHHHH
Confidence            999998643          23567899999998877766    4555679999999322233445678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       162 ~~lA  165 (243)
T d1q7ba_         162 KSLA  165 (243)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=4e-21  Score=154.35  Aligned_cols=139  Identities=16%  Similarity=0.139  Sum_probs=107.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----------ccccCCCceeEEEccCCCHhhHHHHhc--Cc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------LRDSWANNVIWHQGNLLSSDSWKEALD--GV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----------~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~  122 (202)
                      +|++||||||||||++|+++|+++||+|++++|..+..           ........++++.+|+.+.+.+.+.++  ++
T Consensus         1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~~~~~~~~   80 (339)
T d1n7ha_           1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLHYADLTDASSLRRWIDVIKP   80 (339)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCTTTTTTC--------CCEEEEECCTTCHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchhhhhhhhhhhhhccccceEEEEccccCHHHHHHHHhhhcc
Confidence            47999999999999999999999999999999964320           011223568899999999999998876  57


Q ss_pred             cEeEEccccCC------CCccchhhhHHHHHHHHHHHHHc-----CCCEEEEEecc-ccCcC---------CcCCcchHH
Q 028890          123 TAVISCVGGFG------SNSYMYKINGTANINAIRAASEK-----GVKRFVYISAA-DFGVA---------NYLLQGYYE  181 (202)
Q Consensus       123 d~vi~~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~-----~~~~~v~~SS~-~~~~~---------~~~~~~Y~~  181 (202)
                      |+|||+|+...      .+...+..|+.++.++++++++.     ...++++.||+ .++..         ..|.+.|+.
T Consensus        81 D~Vih~Aa~~~~~~~~~~p~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~~E~~~~~p~~~Y~~  160 (339)
T d1n7ha_          81 DEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQSETTPFHPRSPYAA  160 (339)
T ss_dssp             SEEEECCSCCCHHHHHHSHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSBCTTSCCCCCSHHHH
T ss_pred             chhhhccccccccccccCccccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCCCCCCCCCCcchhhH
Confidence            99999999754      34567789999999999988653     23467777773 33321         235678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.++|+++..|.
T Consensus       161 sK~~~E~~~~~~~  173 (339)
T d1n7ha_         161 SKCAAHWYTVNYR  173 (339)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=99.85  E-value=1.7e-21  Score=152.24  Aligned_cols=141  Identities=15%  Similarity=0.162  Sum_probs=111.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|++....+       .....++.++.+|++|+++++++++      
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            478999999999999999999999999999999997543211       1224578899999999999888775      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...          +|...+++|+.++..+.+++    ++.+-+++|++||...-.+.+....|+.+|++
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  161 (260)
T d1x1ta1          82 GRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRIINIASAHGLVASANKSAYVAAKHG  161 (260)
T ss_dssp             SCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCceEeecccccceeccCCcchhhhhhhh
Confidence             5899999999643          24567899999998776654    55566799999994333344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       162 l~~lt~~lA  170 (260)
T d1x1ta1         162 VVGFTKVTA  170 (260)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHhHHHHH
Confidence            999988764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.1e-21  Score=150.28  Aligned_cols=142  Identities=12%  Similarity=0.065  Sum_probs=112.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      +..+|+++||||+++||++++++|+++|++|++++|+.++..     ......++..+.+|++|+++++++++       
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            467899999999999999999999999999999999865411     11234578999999999998887765       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ++|++|||||...          .+...+++|+.++.++.+++    ++++.+++|++||.....+.+....|+.+|++.
T Consensus        84 ~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal  163 (244)
T d1yb1a_          84 DVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHGHIVTVASAAGHVSVPFLLAYCSSKFAA  163 (244)
T ss_dssp             CCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEEECCCC-CCCHHHHHHHHHHHHHH
T ss_pred             CCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCceEEEeecchhcCCCCCcHHHHHHHHHH
Confidence            5899999999643          23467899999998776654    566667999999943333444457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       164 ~~~~~~La  171 (244)
T d1yb1a_         164 VGFHKTLT  171 (244)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=99.85  E-value=2.5e-21  Score=150.87  Aligned_cols=141  Identities=11%  Similarity=0.105  Sum_probs=111.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...  ......++..+.+|++|+++++++++       ++|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            47899999999999999999999999999999999754311  12224678899999999999888775       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHH----Hc-CCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAAS----EK-GVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~-~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||||...          +|+..+++|+.++..+.+++.    +. +.+++|++||.....+......|+.+|.+.+.+
T Consensus        83 lVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l  162 (256)
T d1k2wa_          83 LVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQAGRRGEALVGVYCATKAAVISL  162 (256)
T ss_dssp             EEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHH
T ss_pred             EEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchhhccccccccchhhhhhHHHHH
Confidence            999999643          235678999999988877642    22 346999999943334445567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       163 t~~lA  167 (256)
T d1k2wa_         163 TQSAG  167 (256)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=99.85  E-value=5.4e-21  Score=149.14  Aligned_cols=141  Identities=12%  Similarity=0.059  Sum_probs=111.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-------cccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-------RDSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...       ......++..+.+|++|+++++++++      
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            46899999999999999999999999999999999864311       01123478899999999999887765      


Q ss_pred             -CccEeEEccccCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||...           +|+..+++|+.+++.+.+++    ++.+-+++|++||...-.+.+....|+.+|.
T Consensus        82 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKa  161 (258)
T d1iy8a_          82 GRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSGMVVNTASVGGIRGIGNQSGYAAAKH  161 (258)
T ss_dssp             SCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCGGGTSBCSSBHHHHHHHH
T ss_pred             CCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCCCCcccccHhhccCCCCchHHHHHHH
Confidence             5899999999532           23467899999999887765    4456679999999433334455688999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       162 al~~lt~~lA  171 (258)
T d1iy8a_         162 GVVGLTRNSA  171 (258)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=4.5e-21  Score=148.27  Aligned_cols=141  Identities=13%  Similarity=0.047  Sum_probs=111.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc---CccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a  129 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.++... .....++..+.+|++|+++++++++   ++|++||||
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnnA   82 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNNA   82 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEECC
Confidence            578999999999999999999999999999999998644211 1123578899999999999999887   479999999


Q ss_pred             ccCC----------CCccchhhhHHHHHHHHHHHHH-----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          130 GGFG----------SNSYMYKINGTANINAIRAASE-----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       130 ~~~~----------~~~~~~~~n~~~~~~~~~~~~~-----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      |...          .++..+++|+.++..+.+++.+     .+.+++|++||.....+.+....|+.+|.+.+.+.+.++
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA  162 (242)
T d1cyda_          83 ALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHVTFPNLITYSSTKGAMTMLTKAMA  162 (242)
T ss_dssp             CCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccccCCccccccchHHHHHHHHHHHH
Confidence            9643          2356789999999988776532     234699999995333444556789999999999988764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.85  E-value=5.1e-21  Score=147.94  Aligned_cols=140  Identities=13%  Similarity=0.058  Sum_probs=109.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVI  126 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi  126 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.++........+.+++.+|++|+++++++++       ++|++|
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            4789999999999999999999999999999999986542222223467889999999999887765       589999


Q ss_pred             EccccCC----------CCccchhhhHHHHHHHHHHHHH----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          127 SCVGGFG----------SNSYMYKINGTANINAIRAASE----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       127 ~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      ||||...          +|+..+++|+.++..+.+++.+    .+...++++||. ...+.+....|+.+|.+.+.+.+.
T Consensus        83 nnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~~i~~~ss~-~~~~~~~~~~Y~asKaal~~ltk~  161 (242)
T d1ulsa_          83 HYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPGSIVLTASR-VYLGNLGQANYAASMAGVVGLTRT  161 (242)
T ss_dssp             ECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECCG-GGGCCTTCHHHHHHHHHHHHHHHH
T ss_pred             ECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccceeeeeccc-cccCCCCCcchHHHHHHHHHHHHH
Confidence            9999643          2456789999999988777643    344567777663 233445567899999999999887


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       162 lA  163 (242)
T d1ulsa_         162 LA  163 (242)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.85  E-value=2.3e-21  Score=150.67  Aligned_cols=143  Identities=15%  Similarity=0.076  Sum_probs=112.5

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ...++|+++||||+++||+++++.|+++|++|++++|+.+...     ......++..+.+|++|+++++++++      
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            3457899999999999999999999999999999999754311     11224578999999999998887775      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...          +|...+++|+.++..+.+++    ++++.+++|++||.....+......|+.+|++
T Consensus        86 g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaa  165 (251)
T d2c07a1          86 KNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYGRIINISSIVGLTGNVGQANYSSSKAG  165 (251)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHH
T ss_pred             CCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCeEEEEECCHHhcCCCCCCHHHHHHHHH
Confidence             5899999999543          24567889999998777654    45566799999994322344456789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       166 l~~ltr~lA  174 (251)
T d2c07a1         166 VIGFTKSLA  174 (251)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998864

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=99.85  E-value=2.1e-20  Score=151.01  Aligned_cols=141  Identities=16%  Similarity=0.104  Sum_probs=110.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc--CccEeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD--GVTAVIS  127 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~  127 (202)
                      .++||||||||+||||++|+++|+++|++|++++|+......    ....++++++.+|++|++.+.++++  .+|+|+|
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~~l~~~~~~~~~~~v~~   85 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIRDQNKLLESIREFQPEIVFH   85 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSCHHHHTTTTTTSEEEECCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHHHHhhhhcccCCeEEEeeccChHhhhhhhhhchhhhhhh
Confidence            367999999999999999999999999999999998654322    1224579999999999999998887  5799999


Q ss_pred             ccccCC------CCccchhhhHHHHHHHHHHHHHcCCC-EEEEEeccccC-c-----------CCcCCcchHHHHHHHHH
Q 028890          128 CVGGFG------SNSYMYKINGTANINAIRAASEKGVK-RFVYISAADFG-V-----------ANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       128 ~a~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS~~~~-~-----------~~~~~~~Y~~sK~~~E~  188 (202)
                      +|+...      .+...+.+|+.|+.++++++++.+.. .+++.|++.+. .           +..+..+|+.+|...|.
T Consensus        86 ~aa~~~~~~~~~~~~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~y~~~k~~~e~  165 (356)
T d1rkxa_          86 MAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKGCAEL  165 (356)
T ss_dssp             CCSCCCHHHHHHCHHHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCBCTTSCBCCSSHHHHHHHHHHH
T ss_pred             hhccccccccccCCccccccccccchhhhhhhhccccccccccccccccccccccccccccccccCCCCccccccccchh
Confidence            998654      33567889999999999999987654 55555553222 1           12346789999999998


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      .++.+.
T Consensus       166 ~~~~~~  171 (356)
T d1rkxa_         166 VTSSYR  171 (356)
T ss_dssp             HHHHHH
T ss_pred             hhhHHh
Confidence            887653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=99.84  E-value=6.4e-21  Score=148.79  Aligned_cols=142  Identities=20%  Similarity=0.133  Sum_probs=111.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      +.++|+++||||+++||+++++.|+++|++|++.+|+.++...     .....++.++.+|++|+++++++++       
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFH   84 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            4589999999999999999999999999999999997543111     1224578899999999988777653       


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       ++|++|||||...          +++..+++|+.++..+.+++    ++.+-+++|++||.....+.+....|+.+|.+
T Consensus        85 ~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaa  164 (259)
T d2ae2a_          85 GKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERGNVVFISSVSGALAVPYEAVYGATKGA  164 (259)
T ss_dssp             TCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhcccccccccccccccccccccchHHHHHH
Confidence             4899999999643          23567899999998777765    44556799999994333444556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       165 l~~lt~~lA  173 (259)
T d2ae2a_         165 MDQLTRCLA  173 (259)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998764

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.3e-21  Score=149.45  Aligned_cols=141  Identities=13%  Similarity=0.146  Sum_probs=111.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+++||++++++|+++|++|++++|+.++..     ......++.++++|++|+++++++++       +
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~   88 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK   88 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999999999999764311     11224578899999999998887665       5


Q ss_pred             ccEeEEccccCC---------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHH
Q 028890          122 VTAVISCVGGFG---------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSD  188 (202)
Q Consensus       122 ~d~vi~~a~~~~---------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~  188 (202)
                      +|++|||||...         +|+..+++|+.++..+.+.+    ++.+-.++|++||.....+......|+.+|++.+.
T Consensus        89 iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~  168 (255)
T d1fmca_          89 VDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGGVILTITSMAAENKNINMTSYASSKAAASH  168 (255)
T ss_dssp             CCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTCCCTTCHHHHHHHHHHHH
T ss_pred             CCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhccccccccccccccchhccccccccchhHHHHHHH
Confidence            899999999643         24567889999998777655    44555689999994333444556789999999999


Q ss_pred             HHHHhc
Q 028890          189 VAACQS  194 (202)
Q Consensus       189 ~~~~~~  194 (202)
                      +.+.++
T Consensus       169 lt~~lA  174 (255)
T d1fmca_         169 LVRNMA  174 (255)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988764

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=8.1e-21  Score=146.96  Aligned_cols=142  Identities=14%  Similarity=0.008  Sum_probs=111.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc---CccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD---GVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~  128 (202)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.++... .....++..+.+|++|+++++++++   ++|++|||
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            3588999999999999999999999999999999998644211 1112468889999999999999887   47999999


Q ss_pred             cccCC----------CCccchhhhHHHHHHHHHHHH-----HcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          129 VGGFG----------SNSYMYKINGTANINAIRAAS-----EKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       129 a~~~~----------~~~~~~~~n~~~~~~~~~~~~-----~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ||...          +|+..+++|+.++..+.+++.     +.+.+++|++||.....+.+....|+.+|++.+.+.+.+
T Consensus        84 Ag~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt~~l  163 (244)
T d1pr9a_          84 AAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQRAVTNHSVYCSTKGALDMLTKVM  163 (244)
T ss_dssp             CCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccccccchhhhhhhHHHHHHHHHHH
Confidence            99643          235678999999987766553     234569999999433334445678999999999998876


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      +
T Consensus       164 A  164 (244)
T d1pr9a_         164 A  164 (244)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.84  E-value=5e-21  Score=149.21  Aligned_cols=140  Identities=17%  Similarity=0.095  Sum_probs=111.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .+|+++||||+++||+++++.|+++|++|++.+|+.+....     .....++.++++|++|+++++++++       ++
T Consensus         1 DgKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i   80 (257)
T d2rhca1           1 DSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV   80 (257)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence            36889999999999999999999999999999997543111     1224578999999999998887775       58


Q ss_pred             cEeEEccccCC----------CCccchhhhHHHHHHHHHHHHH------cCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAASE------KGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       123 d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~------~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      |++|||||...          +|...+++|+.++..+.+++.+      .+..++|++||.....+.+....|+.+|.+.
T Consensus        81 DilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g~Ii~i~S~~~~~~~~~~~~Y~asKaal  160 (257)
T d2rhca1          81 DVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGV  160 (257)
T ss_dssp             SEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEEEEEEECCGGGTSCCTTCHHHHHHHHHH
T ss_pred             CEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCcccccccccccccccccchhHHHHHHHH
Confidence            99999999643          2456789999999999887743      3456899999843334445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       161 ~~ltk~lA  168 (257)
T d2rhca1         161 VGFTKALG  168 (257)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998864

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=99.84  E-value=6e-21  Score=149.05  Aligned_cols=141  Identities=14%  Similarity=0.088  Sum_probs=110.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...     ......++..+.+|++|+++++++++       +
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   82 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK   82 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            47899999999999999999999999999999999754311     11224578899999999998887775       5


Q ss_pred             ccEeEEccccCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          122 VTAVISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       122 ~d~vi~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      +|++|||||...           +|...+++|+.++..+.+++    .+.+-+++|++||...-.+.+....|+.+|.+.
T Consensus        83 iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~II~isS~~~~~~~~~~~~Y~asKaal  162 (260)
T d1zema1          83 IDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYGRIVNTASMAGVKGPPNMAAYGTSKGAI  162 (260)
T ss_dssp             CCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHSCCTTBHHHHHHHHHH
T ss_pred             CCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCCCCCeeechhhccCCcchHHHHHHHHHH
Confidence            899999999542           13457789999998877765    445567999999932223334457899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       163 ~~ltk~lA  170 (260)
T d1zema1         163 IALTETAA  170 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.6e-21  Score=148.82  Aligned_cols=140  Identities=13%  Similarity=0.144  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccCCCHhhHHHHhc-------CccEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDSWKEALD-------GVTAV  125 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~v  125 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+.... .....++.++.+|++|+++++++++       ++|++
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDil   83 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCV   83 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence            578999999999999999999999999999999997643211 1123578899999999999888775       58999


Q ss_pred             EEccccCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          126 ISCVGGFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       126 i~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      |||||...           +|+..+++|+.+++.+.+++    ++.+ +++|++||.....+.+....|+.+|.+.+.+.
T Consensus        84 VnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-G~Ii~isS~~~~~~~~~~~~Y~asKaal~~lt  162 (250)
T d1ydea1          84 VNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQ-GNVINISSLVGAIGQAQAVPYVATKGAVTAMT  162 (250)
T ss_dssp             EECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCHHHHHCCTTCHHHHHHHHHHHHHH
T ss_pred             EecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCC-CCCcccccccccccccCcchhHHHHhhHHHHH
Confidence            99999532           13457899999998877765    3444 69999999322234455678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       163 ~~lA  166 (250)
T d1ydea1         163 KALA  166 (250)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=99.84  E-value=8.1e-21  Score=147.57  Aligned_cols=141  Identities=16%  Similarity=0.180  Sum_probs=110.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...    ......++.++.+|++|+++++++++       ++
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence            57899999999999999999999999999999999754311    11124578999999999998887765       58


Q ss_pred             cEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCC-EEEEEeccccCcCCcCCcchHHHHHHHH
Q 028890          123 TAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVK-RFVYISAADFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       123 d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~-~~v~~SS~~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      |++|||||...          +|...+++|+.+++.+.+++.    +.+.+ ++|++||...-.+.+....|+.+|.+.+
T Consensus        84 DiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~~~~~~~~~~~Y~asKaal~  163 (251)
T d1zk4a1          84 STLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEGFVGDPSLGAYNASKGAVR  163 (251)
T ss_dssp             CEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGGTSCCTTCHHHHHHHHHHH
T ss_pred             eEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccceeccCCCchhHHHHHHHHh
Confidence            99999999643          234678999999998877753    34443 8999999432234445678999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+.+.++
T Consensus       164 ~lt~~lA  170 (251)
T d1zk4a1         164 IMSKSAA  170 (251)
T ss_dssp             HHHHHHH
T ss_pred             cchHHHH
Confidence            9888754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=99.84  E-value=8.8e-21  Score=148.14  Aligned_cols=142  Identities=13%  Similarity=0.073  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      +.++|+++||||+++||++++++|+++|++|++++|+..+...      .....++..+++|++|+++++++++      
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            3578999999999999999999999999999999998643211      1224578899999999998888775      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCC-CEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGV-KRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~-~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||...          +|...+++|+.++..+.+++    .+.+. .+++++||.....+.+....|+.+|.
T Consensus        84 G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~~~~~~~~~~Y~asKa  163 (261)
T d1geea_          84 GKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHEKIPWPLFVHYAASKG  163 (261)
T ss_dssp             SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGGTSCCTTCHHHHHHHH
T ss_pred             CCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchhcccCccccccccCCc
Confidence             5899999999643          23567899999998776665    44443 36888998433334445678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       164 al~~lt~~lA  173 (261)
T d1geea_         164 GMKLMTETLA  173 (261)
T ss_dssp             HHHHHHHHHH
T ss_pred             cchhhHHHHH
Confidence            9999988764

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.83  E-value=1.2e-20  Score=147.30  Aligned_cols=142  Identities=15%  Similarity=0.120  Sum_probs=106.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      +.++|+++||||+++||+++++.|+++|++|++++|+.++...     .....++..+.+|++|+++++++++       
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~   84 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFG   84 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence            4689999999999999999999999999999999998643111     1224578999999999988776553       


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       .+|++|||||...          +++..+++|+.++..+.+++    ++.+.+++|++||.....+......|+.+|.+
T Consensus        85 g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaa  164 (259)
T d1xq1a_          85 GKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGA  164 (259)
T ss_dssp             TCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCEEEEEC----------CCHHHHHHHH
T ss_pred             CCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccccccccccccccccccccccccccccc
Confidence             3899999999643          24567899999998777765    45566799999994333344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       165 l~~lt~~lA  173 (259)
T d1xq1a_         165 LNQLARNLA  173 (259)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhhhHHHH
Confidence            999988764

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.83  E-value=1.5e-20  Score=146.31  Aligned_cols=138  Identities=18%  Similarity=0.195  Sum_probs=107.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      |.++||||+++||++++++|+++|++|++++|+.++...     .....++..+.+|++|+++++++++       ++|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            567999999999999999999999999999998643111     1224578899999999998887765       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcC-CCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKG-VKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      +|||||...          .|+..+++|+.++.++.+++    .+.+ ..+++++||...-.+.+....|+.+|.+.+.+
T Consensus        82 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l  161 (255)
T d1gega_          82 IVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHVGNPELAVYSSSKFAVRGL  161 (255)
T ss_dssp             EEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHH
T ss_pred             EEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcccCcccccchhCHHHHHhh
Confidence            999999542          24567899999999887765    3333 35799999843333445567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       162 tk~lA  166 (255)
T d1gega_         162 TQTAA  166 (255)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=99.83  E-value=1.9e-20  Score=146.71  Aligned_cols=141  Identities=11%  Similarity=0.132  Sum_probs=108.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----cccCCCceeEEEccCCCHhhHHHHhc-------Cc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----RDSWANNVIWHQGNLLSSDSWKEALD-------GV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~  122 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+...    .......+.++.+|++|+++++++++       ++
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            57899999999999999999999999999999999764311    11123568889999999999888775       58


Q ss_pred             cEeEEccccCC------------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEecc-ccCcCCcCCcchHHHHHH
Q 028890          123 TAVISCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAA-DFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       123 d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~  185 (202)
                      |++|||||...            .++..+++|+.++..+.+++    .+++-+++|++||. .+.........|+.+|++
T Consensus        84 D~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~ii~iss~~~~~~~~~~~~~Y~asKaa  163 (268)
T d2bgka1          84 DIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKGSIVFTASISSFTAGEGVSHVYTATKHA  163 (268)
T ss_dssp             CEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCEEEEEECCGGGTCCCTTSCHHHHHHHHH
T ss_pred             ceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCCCccccccccccccccccccccchhHHH
Confidence            99999999532            12346789999998777765    44555699999983 332223334579999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       164 l~~lt~~lA  172 (268)
T d2bgka1         164 VLGLTTSLC  172 (268)
T ss_dssp             HHHHHHHHH
T ss_pred             HHhCHHHHH
Confidence            999988764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.82  E-value=1.9e-20  Score=144.50  Aligned_cols=138  Identities=12%  Similarity=0.039  Sum_probs=107.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCe-------EEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLT-------VASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~-------V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      +.|+||||+++||++++++|+++|++       |+..+|+.+....     .....++.++.+|++|+++++++++    
T Consensus         2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~   81 (240)
T d2bd0a1           2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVE   81 (240)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHH
Confidence            45899999999999999999999987       7888887543111     1223578899999999998887765    


Q ss_pred             ---CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 ---GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 ---~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                         ++|++|||||...          +++..+++|+.+++.+.+++    ++++-+++|++||...-.+.+....|+.+|
T Consensus        82 ~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G~Ii~isS~~~~~~~~~~~~Y~asK  161 (240)
T d2bd0a1          82 RYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSGHIFFITSVAATKAFRHSSIYCMSK  161 (240)
T ss_dssp             HTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTCHHHHHHH
T ss_pred             HcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCCceEEEechhhcCCCCCChHHHHHH
Confidence               5899999999643          24568899999998776665    455667999999943333445567899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      ++.+.+.+.++
T Consensus       162 ~al~~lt~~la  172 (240)
T d2bd0a1         162 FGQRGLVETMR  172 (240)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988763

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.3e-20  Score=144.28  Aligned_cols=138  Identities=12%  Similarity=0.078  Sum_probs=108.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cc-cCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RD-SWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~-~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ++|+++||||+++||+++++.|+++|++|++++|+.++..      .. ....++.++.+|++|+++++++++       
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   81 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG   81 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence            5799999999999999999999999999999999864311      11 123478899999999998888775       


Q ss_pred             CccEeEEccccCC--CCccchhhhHHHHHHHHHHHH----HcC---CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          121 GVTAVISCVGGFG--SNSYMYKINGTANINAIRAAS----EKG---VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       121 ~~d~vi~~a~~~~--~~~~~~~~n~~~~~~~~~~~~----~~~---~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      ++|++|||||...  +++..+++|+.+++++.+++.    +.+   .+++|++||...-.+.+....|+.+|++.+.+.+
T Consensus        82 ~iDilVnnAg~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~ltr  161 (254)
T d2gdza1          82 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTR  161 (254)
T ss_dssp             CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTCHHHHHHHHHHHHHHH
T ss_pred             CcCeecccccccccccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHhhccCCCCccchHHHHHHHHHHHH
Confidence            5899999999754  567788999998887666553    322   2479999994333344456789999999999987


Q ss_pred             H
Q 028890          192 C  192 (202)
Q Consensus       192 ~  192 (202)
                      .
T Consensus       162 s  162 (254)
T d2gdza1         162 S  162 (254)
T ss_dssp             H
T ss_pred             H
Confidence            5

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.82  E-value=2e-20  Score=145.49  Aligned_cols=141  Identities=16%  Similarity=0.189  Sum_probs=110.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc--ccccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.+..  .......+..++.+|++|+++++++++       ++|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            5789999999999999999999999999999999975431  112224678899999999988877765       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHHH---cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASE---KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAA  191 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~---~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~  191 (202)
                      +|||||...          +|+..+++|+.+++.+.+++.+   .+-+++|++||.....+.+....|+.+|++.+.+.+
T Consensus        84 lVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~  163 (253)
T d1hxha_          84 LVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTR  163 (253)
T ss_dssp             EEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHH
T ss_pred             EEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhhcCccccccccchhHHHHHHHH
Confidence            999999643          2456789999999877776533   123699999994333344556789999999999988


Q ss_pred             Hhc
Q 028890          192 CQS  194 (202)
Q Consensus       192 ~~~  194 (202)
                      .++
T Consensus       164 ~lA  166 (253)
T d1hxha_         164 AAA  166 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.82  E-value=1.6e-20  Score=145.24  Aligned_cols=138  Identities=14%  Similarity=0.113  Sum_probs=107.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      +.++||||+++||++++++|+++|++|++.+++.....+      .....++.++++|++|+++++++++       ++|
T Consensus         2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTID   81 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCS
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence            589999999999999999999999999887665432111      1224678899999999998887765       589


Q ss_pred             EeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHH
Q 028890          124 AVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDV  189 (202)
Q Consensus       124 ~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~  189 (202)
                      ++|||||...          .|+..+++|+.++..+.+++    ++++-+++|++||.....+......|+.+|.+.+.+
T Consensus        82 iLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~IVnisS~~~~~~~~~~~~Y~asKaal~~l  161 (244)
T d1edoa_          82 VVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKGRIINIASVVGLIGNIGQANYAAAKAGVIGF  161 (244)
T ss_dssp             EEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCTHHHHCCTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCcEEEEEcChhhcCCCCCCHHHHHHHHHHHHC
Confidence            9999999643          24567899999998776665    455667999999932223344567899999999999


Q ss_pred             HHHhc
Q 028890          190 AACQS  194 (202)
Q Consensus       190 ~~~~~  194 (202)
                      .+.++
T Consensus       162 tk~lA  166 (244)
T d1edoa_         162 SKTAA  166 (244)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            88764

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.9e-20  Score=142.70  Aligned_cols=141  Identities=18%  Similarity=0.203  Sum_probs=109.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------ccc-CCCceeEEEccCCCHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDS-WANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~-~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      .++|+++||||+++||.++++.|+++|++|++.+|+.++..      ... .+.++.++++|++|+++++++++      
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~   87 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH   87 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999999999999999999864311      111 23478899999999998887665      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcC--CCEEEEEec-cccC-cCCcCCcchHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKG--VKRFVYISA-ADFG-VANYLLQGYYE  181 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~--~~~~v~~SS-~~~~-~~~~~~~~Y~~  181 (202)
                       ++|++|||||...          .++..+++|+.++..+.+++    ++.+  .+++|++|| +.+. .+......|+.
T Consensus        88 g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~p~~~~~~Y~~  167 (257)
T d1xg5a_          88 SGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSMSGHRVLPLSVTHFYSA  167 (257)
T ss_dssp             CCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCGGGTSCCSCGGGHHHHH
T ss_pred             CCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEechHhcCCCCCcccHHHHH
Confidence             5899999999643          23567889999998776665    3433  469999999 3332 33444566999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       168 sKaal~~ltr~la  180 (257)
T d1xg5a_         168 TKYAVTALTEGLR  180 (257)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHH
Confidence            9999999998764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=99.81  E-value=8.1e-20  Score=142.39  Aligned_cols=142  Identities=17%  Similarity=0.087  Sum_probs=111.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-----cccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-----RDSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-----~~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++|+++||||+++||++++++|+++|++|++++|++.+..     .......+.++.+|++++++++++++       
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~   82 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFD   82 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhC
Confidence            458999999999999999999999999999999999864311     11224567889999999998877654       


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       .+|++|||||...          +|...+++|+.++..+.+++    .+.+.+++|++||.....+.+....|+.+|.+
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g~ii~isS~~~~~~~~~~~~Y~~sK~a  162 (258)
T d1ae1a_          83 GKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNGNVIFLSSIAGFSALPSVSLYSASKGA  162 (258)
T ss_dssp             SCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSEEEEEECCGGGTSCCTTCHHHHHHHHH
T ss_pred             CCcEEEeccccccccCccccCCHHHHhhhhhhccccccccccccccccccccccccccccccccccccccchhHHHHHHH
Confidence             3799999999643          24567889999998777665    44566799999994333445556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       163 l~~lt~~lA  171 (258)
T d1ae1a_         163 INQMTKSLA  171 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=99.81  E-value=4.9e-20  Score=144.98  Aligned_cols=140  Identities=19%  Similarity=0.186  Sum_probs=109.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+++||++++++|+++|++|++++|+.++..  ......++..+.+|++++++++++++       ++|+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            47899999999999999999999999999999999864321  11224578999999999998887765       5899


Q ss_pred             eEEccccCCC---------------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          125 VISCVGGFGS---------------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       125 vi~~a~~~~~---------------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                      +|||||....               |+..+++|+.+++.+.+++    ++.+ +++|+++|.....+......|+.+|.+
T Consensus        83 lvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g~iI~i~S~~~~~~~~~~~~Y~asKaa  161 (276)
T d1bdba_          83 LIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-GNVIFTISNAGFYPNGGGPLYTAAKHA  161 (276)
T ss_dssp             EECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGTSTTSSCHHHHHHHHH
T ss_pred             ccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-CCceeeeechhccCCCCCchHHHHHHH
Confidence            9999995321               3456789999998777665    4444 689999884333344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       162 l~~ltr~lA  170 (276)
T d1bdba_         162 IVGLVRELA  170 (276)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.81  E-value=7.6e-20  Score=143.58  Aligned_cols=141  Identities=14%  Similarity=0.105  Sum_probs=107.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------ccc--CCCceeEEEccCCCHhhHHHHhc----
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDS--WANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.++..      ...  ...++.++.+|++|+++++++++    
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            357899999999999999999999999999999999864311      011  12468899999999998887775    


Q ss_pred             ---CccEeEEccccCCC--------------CccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccC-cCCcCCcc
Q 028890          121 ---GVTAVISCVGGFGS--------------NSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFG-VANYLLQG  178 (202)
Q Consensus       121 ---~~d~vi~~a~~~~~--------------~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~-~~~~~~~~  178 (202)
                         ++|++|||||....              |...+++|+.+++.+.+++.    +.+ ..+|+++|+..+ .+.+....
T Consensus        82 ~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~Ss~a~~~~~~~~~~  160 (272)
T d1xkqa_          82 QFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-GEIVNVSSIVAGPQAQPDFLY  160 (272)
T ss_dssp             HHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCGGGSSSCCCSSHH
T ss_pred             HhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccC-CccccccchhccccCCCCcch
Confidence               58999999996421              33456889999988877763    333 466666663333 33445678


Q ss_pred             hHHHHHHHHHHHHHhc
Q 028890          179 YYEGKVLSSDVAACQS  194 (202)
Q Consensus       179 Y~~sK~~~E~~~~~~~  194 (202)
                      |+.+|++.+.+.+.++
T Consensus       161 Y~asKaal~~ltk~lA  176 (272)
T d1xkqa_         161 YAIAKAALDQYTRSTA  176 (272)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            9999999999988764

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=99.81  E-value=1.6e-19  Score=140.40  Aligned_cols=141  Identities=16%  Similarity=0.086  Sum_probs=109.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCC-CHhhHHHHhc------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLL-SSDSWKEALD------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~-~~~~~~~~~~------  120 (202)
                      .++|+|+||||+++||.+++++|+++|++|+++.|+.++...      .....++.++.+|+. +.++++++++      
T Consensus         3 l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~   82 (254)
T d1sbya1           3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAINPKVNITFHTYDVTVPVAESKKLLKKIFDQL   82 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHCTTSEEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHHHHHhhCCCCCEEEEEeecCCCHHHHHHHHHHHHHHc
Confidence            578999999999999999999999999999999887654211      122357889999997 5555665554      


Q ss_pred             -CccEeEEccccCC--CCccchhhhHHHHHHHHHHHHH----c---CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          121 -GVTAVISCVGGFG--SNSYMYKINGTANINAIRAASE----K---GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       121 -~~d~vi~~a~~~~--~~~~~~~~n~~~~~~~~~~~~~----~---~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                       ++|++|+|||...  .++..+++|+.|+.++.+++..    .   ..+++|++||...-.+.+....|+.+|++...+.
T Consensus        83 g~iDilvnnAG~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~isS~~~~~~~~~~~~Y~asKaal~~~t  162 (254)
T d1sbya1          83 KTVDILINGAGILDDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANICSVTGFNAIHQVPVYSASKAAVVSFT  162 (254)
T ss_dssp             SCCCEEEECCCCCCTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGGGTSCCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEechhhccCCCCCHHHHHHHHHHHHHH
Confidence             6899999999754  4678899999999988776633    2   2358999999433344555678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.++
T Consensus       163 ~~la  166 (254)
T d1sbya1         163 NSLA  166 (254)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.81  E-value=1.8e-19  Score=139.48  Aligned_cols=140  Identities=14%  Similarity=0.127  Sum_probs=105.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHH---CCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           55 PSEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~---~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .||+|+||||+++||.+++++|++   +|++|++.+|+.++...    .....++.++.+|++|+++++++++       
T Consensus         1 ~MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~   80 (248)
T d1snya_           1 HMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELEDLAKNHSNIHILEIDLRNFDAYDKLVADIEGVTK   80 (248)
T ss_dssp             CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHHHHHHCTTEEEEECCTTCGGGHHHHHHHHHHHHG
T ss_pred             CcCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHhcCCcEEEEEEEeccHHHHHHHHhhhHHHhh
Confidence            378999999999999999999974   69999999998765321    1224689999999999988776554       


Q ss_pred             --CccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHH----Hc-----------CCCEEEEEeccc-c--
Q 028890          121 --GVTAVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EK-----------GVKRFVYISAAD-F--  169 (202)
Q Consensus       121 --~~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~-----------~~~~~v~~SS~~-~--  169 (202)
                        ++|++|||||....           +...+++|+.++..+.+++.    +.           +.+++|++||.. .  
T Consensus        81 ~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~~~~g~ii~i~S~~g~~~  160 (248)
T d1snya_          81 DQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMGVGRAAIINMSSILGSIQ  160 (248)
T ss_dssp             GGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSSTTTCEEEEECCGGGCST
T ss_pred             cCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhccccccccccccccccccccccccC
Confidence              48999999996431           23467899999987777652    21           346899999932 1  


Q ss_pred             CcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          170 GVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       170 ~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      +.+......|+.||++...+.+.++
T Consensus       161 ~~~~~~~~~Y~aSKaal~~lt~~la  185 (248)
T d1snya_         161 GNTDGGMYAYRTSKSALNAATKSLS  185 (248)
T ss_dssp             TCCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCChHHHHHHHHHHHHHHHHHH
Confidence            2233345689999999999888754

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=1.1e-19  Score=141.95  Aligned_cols=140  Identities=15%  Similarity=0.077  Sum_probs=106.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------c--cCCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~--~~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+++||++++++|+++|++|++++|+.++...      .  ....++.++.+|++|+++++++++     
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999998643111      1  112468999999999998888775     


Q ss_pred             --CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccC-cCCcCCcch
Q 028890          121 --GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFG-VANYLLQGY  179 (202)
Q Consensus       121 --~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~-~~~~~~~~Y  179 (202)
                        ++|++|||||...              .|+..+++|+.++..+.+++.    +.+ +++|+++|+..+ .+.+....|
T Consensus        83 ~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~-g~iI~~~S~~~~~~~~~~~~~Y  161 (264)
T d1spxa_          83 FGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-GEIVNISSIASGLHATPDFPYY  161 (264)
T ss_dssp             HSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEECCTTSSSSCCTTSHHH
T ss_pred             hCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCcccccc-CcceeeeeeccccccCCCchhh
Confidence              5899999998531              134577899999988777663    333 577777774333 344455779


Q ss_pred             HHHHHHHHHHHHHhc
Q 028890          180 YEGKVLSSDVAACQS  194 (202)
Q Consensus       180 ~~sK~~~E~~~~~~~  194 (202)
                      +.+|.+.+.+.+.++
T Consensus       162 ~asKaal~~lt~~lA  176 (264)
T d1spxa_         162 SIAKAAIDQYTRNTA  176 (264)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHH
Confidence            999999999988764

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.6e-19  Score=138.46  Aligned_cols=141  Identities=7%  Similarity=-0.016  Sum_probs=110.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc---CccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD---GVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---~~d~vi~~a~  130 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|++++........++....+|+.+.+.++...+   ++|++|||+|
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~id~lVn~ag   83 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVAG   83 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeeccccccccccccccccceeEEeccc
Confidence            5789999999999999999999999999999999986543333334678899999988877666554   6899999999


Q ss_pred             cCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccC-cCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFG-VANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~-~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ...          .|...+++|+.++..+.+++    .+.+..++|++||.... .+......|+.+|.+.+.+++.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~~~~~~~~~Y~~sKaal~~l~r~lA  162 (245)
T d2ag5a1          84 FVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSGNIINMSSVASSVKGVVNRCVYSTTKAAVIGLTKSVA  162 (245)
T ss_dssp             CCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCSBTTTBCCTTBHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCceeeeeechhhccCCccchhHHHHHHHHHHHHHHHHH
Confidence            643          23457889999998877765    34455699999984332 334556789999999999998864

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.80  E-value=1.4e-19  Score=142.12  Aligned_cols=141  Identities=11%  Similarity=0.055  Sum_probs=107.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------ccc--CCCceeEEEccCCCHhhHHHHhc-----
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDS--WANNVIWHQGNLLSSDSWKEALD-----  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~--~~~~~~~~~~D~~~~~~~~~~~~-----  120 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+.++..      ...  ...++..+.+|++|+++++++++     
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999854311      111  12368899999999998887765     


Q ss_pred             --CccEeEEccccCC------------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHH
Q 028890          121 --GVTAVISCVGGFG------------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEG  182 (202)
Q Consensus       121 --~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~s  182 (202)
                        ++|++|||||...            .|+..+++|+.+++.+.+++    ++.+.++++++||.....+......|+.+
T Consensus        82 ~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g~ii~~ss~~~~~~~~~~~~Y~as  161 (274)
T d1xhla_          82 FGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGEIVNVSSIVAGPQAHSGYPYYACA  161 (274)
T ss_dssp             HSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCEEEEECCGGGSSSCCTTSHHHHHH
T ss_pred             cCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccccccchhhhhccccCCCCceehhh
Confidence              5899999998531            13456788999998777766    34455577777763322334455789999


Q ss_pred             HHHHHHHHHHhc
Q 028890          183 KVLSSDVAACQS  194 (202)
Q Consensus       183 K~~~E~~~~~~~  194 (202)
                      |.+.+.+.+..+
T Consensus       162 Kaal~~ltk~lA  173 (274)
T d1xhla_         162 KAALDQYTRCTA  173 (274)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH
Confidence            999999988754

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.7e-19  Score=141.26  Aligned_cols=141  Identities=16%  Similarity=0.078  Sum_probs=110.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----------cccCCCceeEEEccCCCHhhHHHHhc--
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----------RDSWANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----------~~~~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      ..++|+++||||+++||+++++.|+++|++|++++|+.++..          ......++.++.+|++|+++++++++  
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            468999999999999999999999999999999999854311          11124578899999999998887765  


Q ss_pred             -----CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----HcCCCEEEEEeccccCcCCcCCcchHH
Q 028890          121 -----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EKGVKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 -----~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~~~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                           ++|++|||||...          +++..+++|+.+++.+.+++.    +.+..++|++|++.. ...+....|+.
T Consensus        89 ~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~Ii~~ss~~~-~~~~~~~~Y~a  167 (297)
T d1yxma1          89 LDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGGSIVNIIVPTK-AGFPLAVHSGA  167 (297)
T ss_dssp             HHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCEEEEEECCCCT-TCCTTCHHHHH
T ss_pred             HHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccccccccccccc-ccccccccchh
Confidence                 5899999999533          245678999999998877764    344567888876422 23445678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       168 sKaal~~ltk~lA  180 (297)
T d1yxma1         168 ARAGVYNLTKSLA  180 (297)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.80  E-value=2.2e-19  Score=135.59  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=97.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh-cCccEeEEccccC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-DGVTAVISCVGGF  132 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-~~~d~vi~~a~~~  132 (202)
                      .|+|+||||||+||++++++|+++|+  +|+++.|++...     .+.+.   .+..|..++...+ ..+|+||||+|..
T Consensus         2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~-----~~~~~---~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE-----HPRLD---NPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC-----CTTEE---CCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh-----ccccc---ccccchhhhhhccccchheeeeeeeee
Confidence            47999999999999999999999998  677777765332     12333   3344444443333 4589999999864


Q ss_pred             C----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          133 G----SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       133 ~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      .    .....++.|+.++.+++++|++.++++|+++||.  +......+.|..+|+.+|+.+++.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~v~~~i~~Ss~--~~~~~~~~~y~~~K~~~E~~l~~~  136 (212)
T d2a35a1          74 IKEAGSEEAFRAVDFDLPLAVGKRALEMGARHYLVVSAL--GADAKSSIFYNRVKGELEQALQEQ  136 (212)
T ss_dssp             HHHHSSHHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCT--TCCTTCSSHHHHHHHHHHHHHTTS
T ss_pred             ccccccccccccchhhhhhhccccccccccccccccccc--ccccccccchhHHHHHHhhhcccc
Confidence            2    2345778899999999999999999999999993  233345578999999999998764

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=99.79  E-value=9.3e-20  Score=140.68  Aligned_cols=140  Identities=16%  Similarity=0.156  Sum_probs=108.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------CccE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVTA  124 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~  124 (202)
                      .++|+++||||+++||++++++|+++|++|++++|+.++...  .....++.++++|++++++++++++       ++|+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            578999999999999999999999999999999998654211  2234678899999999999887665       5899


Q ss_pred             eEEccccCC----------CCccchhhhHHHHHHHHHHHHHcC--CCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          125 VISCVGGFG----------SNSYMYKINGTANINAIRAASEKG--VKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       125 vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~~--~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      +|||||...          .|...+++|+.++..+.+++....  .+.++++||. .....+....|+.+|++.|.+.+.
T Consensus        83 LinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~-a~~~~~~~~~Y~~sK~al~~lt~~  161 (241)
T d2a4ka1          83 VAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSV-AGLGAFGLAHYAAGKLGVVGLART  161 (241)
T ss_dssp             EEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCC-TTCCHHHHHHHHHCSSHHHHHHHH
T ss_pred             eccccccccccchhhhhccccccccccccccccccccccccccccccceeecccc-ccccccCccccchhhHHHHHHHHH
Confidence            999998543          235678899999999888875532  2355555543 233334467899999999999988


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       162 lA  163 (241)
T d2a4ka1         162 LA  163 (241)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.79  E-value=3.6e-19  Score=136.75  Aligned_cols=137  Identities=17%  Similarity=0.070  Sum_probs=107.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC-HhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS-SDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+++..    .....+++.+|+++ .+.+.+.+.++|++|||||..
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l----~~~~~~~~~~Dv~~~~~~~~~~~g~iD~lVnnAG~~   77 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELL----KRSGHRYVVCDLRKDLDLLFEKVKEVDILVLNAGGP   77 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----HHTCSEEEECCTTTCHHHHHHHSCCCSEEEECCCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----HhcCCcEEEcchHHHHHHHHHHhCCCcEEEeccccc
Confidence            4689999999999999999999999999999999975432    12345678899976 345556667899999999954


Q ss_pred             C----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          133 G----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       133 ~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .          +++..+++|+.++..+.+++    ++.+.+++|++||.....+......|+.+|.+.+.+.+.++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G~ii~i~S~~~~~~~~~~~~Y~asKaal~~ltk~lA  153 (234)
T d1o5ia_          78 KAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWGRIVAITSFSVISPIENLYTSNSARMALTGFLKTLS  153 (234)
T ss_dssp             CCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEECCGGGTSCCTTBHHHHHHHHHHHHHHHHHH
T ss_pred             CCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccccccccccccccccccccccchhHHHHHHHHHHHHH
Confidence            3          23456789999888776655    45566799999995444555666789999999999888764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=99.79  E-value=4.2e-19  Score=138.42  Aligned_cols=142  Identities=18%  Similarity=0.228  Sum_probs=107.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      +.++|+++||||+++||+++++.|+++|++|++++|+.++...      .....++..+.+|++|+++++++++      
T Consensus         6 ~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   85 (260)
T d1h5qa_           6 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDADL   85 (260)
T ss_dssp             CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHHHS
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence            4578999999999999999999999999999999998765221      1224578899999999998887775      


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHH----Hc-CCCEEEEEeccccCc-------CCcCCc
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAAS----EK-GVKRFVYISAADFGV-------ANYLLQ  177 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~----~~-~~~~~v~~SS~~~~~-------~~~~~~  177 (202)
                       ++|++|||||...          +++..+++|+.++..+.+++.    +. +.++++.+||.....       ......
T Consensus        86 g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~~~~~~~~~~~~~~~~~~  165 (260)
T d1h5qa_          86 GPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMSSQIINQSSLNGSLTQV  165 (260)
T ss_dssp             CSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTSCCEEETTEECSCH
T ss_pred             CCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeeccccccccccccccCcccc
Confidence             5899999999543          235678899999987776553    23 334666666632111       113346


Q ss_pred             chHHHHHHHHHHHHHhc
Q 028890          178 GYYEGKVLSSDVAACQS  194 (202)
Q Consensus       178 ~Y~~sK~~~E~~~~~~~  194 (202)
                      .|+.+|.+.+.+.+.++
T Consensus       166 ~Y~asKaal~~lt~~lA  182 (260)
T d1h5qa_         166 FYNSSKAACSNLVKGLA  182 (260)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhHHHHHHHHH
Confidence            79999999999988764

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3.1e-19  Score=141.99  Aligned_cols=141  Identities=16%  Similarity=0.104  Sum_probs=106.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-----------cCCCceeEEEccCCCHhhHHHHhc--
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-----------SWANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-----------~~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      .++|+++||||+++||+++++.|+++|++|++.+|+.+.....           ..........+|+.|.++++++++  
T Consensus         5 l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~   84 (302)
T d1gz6a_           5 FDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVKTA   84 (302)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH
Confidence            5789999999999999999999999999999998875432110           011234566788888777666554  


Q ss_pred             -----CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHH
Q 028890          121 -----GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 -----~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                           ++|++|||||...          +|+..+++|+.++..+.+++    ++++-++||++||...-.+......|+.
T Consensus        85 ~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~IV~isS~~~~~~~~~~~~Y~a  164 (302)
T d1gz6a_          85 LDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYGRIIMTASASGIYGNFGQANYSA  164 (302)
T ss_dssp             HHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCHHHHHCCTTCHHHHH
T ss_pred             HHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCcEEEEeCChhhcCCCCCcHHHHH
Confidence                 6899999999643          24567899999999877765    5566679999999322233445678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|++.+.+.+.++
T Consensus       165 sKaal~~lt~~la  177 (302)
T d1gz6a_         165 AKLGLLGLANTLV  177 (302)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988764

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.78  E-value=3.4e-19  Score=138.81  Aligned_cols=142  Identities=15%  Similarity=0.078  Sum_probs=108.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      +..+|+++||||+++||+++++.|+++|++|++..++..+...      .....++..+.+|++|+++++.+++      
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~   82 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHF   82 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHc
Confidence            5689999999999999999999999999999987766543211      1234578999999999998887765      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEecccc-CcCCcCCcchHHHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISAADF-GVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~-~~~~~~~~~Y~~sK~~~  186 (202)
                       ++|++|||||....          ++..+++|+.++..+++++...  .-+++++++|... ..+.+....|+.+|.+.
T Consensus        83 g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~~~~~~~~~~Y~asK~al  162 (259)
T d1ja9a_          83 GGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAVMTGIPNHALYAGSKAAV  162 (259)
T ss_dssp             SCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGTCCSCCSCHHHHHHHHHH
T ss_pred             CCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCcccccccccccccCCCCchhHHHHHHHH
Confidence             58999999996431          3457889999999888887553  1246777766322 22344567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       163 ~~l~r~lA  170 (259)
T d1ja9a_         163 EGFCRAFA  170 (259)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888764

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.9e-19  Score=138.01  Aligned_cols=139  Identities=12%  Similarity=0.060  Sum_probs=105.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEe---cCCCCcc--------cccCCCceeEEEccCCCHhhHHHHhc----
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLS---RSGRSSL--------RDSWANNVIWHQGNLLSSDSWKEALD----  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~---r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~~----  120 (202)
                      +|.|+||||+++||++++++|+++|++|+.+.   |+.....        ......++..+.+|++|++++.++++    
T Consensus         2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~   81 (285)
T d1jtva_           2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTE   81 (285)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTT
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhccc
Confidence            46789999999999999999999998765543   4322210        01234578999999999999988775    


Q ss_pred             -CccEeEEccccCC----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHH
Q 028890          121 -GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVL  185 (202)
Q Consensus       121 -~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~  185 (202)
                       .+|++|+|+|...          .+...+++|+.|+.++.+++    ++++-+++|++||...-.+.+....|+.+|++
T Consensus        82 g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G~Iv~isS~~g~~~~~~~~~Y~asKaa  161 (285)
T d1jtva_          82 GRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPFNDVYCASKFA  161 (285)
T ss_dssp             SCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEEEEEGGGTSCCTTCHHHHHHHHH
T ss_pred             cchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCCceEEEechhhcCCCCCchHHHHHHHH
Confidence             4799999998543          23567899999998777664    55666799999994333344556789999999


Q ss_pred             HHHHHHHhc
Q 028890          186 SSDVAACQS  194 (202)
Q Consensus       186 ~E~~~~~~~  194 (202)
                      .+.+.+.++
T Consensus       162 l~~l~~~la  170 (285)
T d1jtva_         162 LEGLCESLA  170 (285)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988764

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=99.77  E-value=1.5e-18  Score=134.95  Aligned_cols=139  Identities=22%  Similarity=0.241  Sum_probs=109.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcc--c------ccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSL--R------DSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~--~------~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..+++||||+|+||++++++|+++|+ +|+++.|+..+..  .      .....++.++.+|++|++++.++++      
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l~~~g~~v~~~~~Dv~d~~~~~~~~~~i~~~~   88 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAELEALGARTTVAACDVTDRESVRELLGGIGDDV   88 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHTSCTTS
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHHHhccccccccccccchHHHHHHhhccccccc
Confidence            45999999999999999999999998 5777888642211  0      1224578999999999999988876      


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVA  190 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~  190 (202)
                      ++|.||||+|....          +...+++|+.++.++.+++...+.++||++||...-.+......|+.+|.+.+.+.
T Consensus        89 ~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~iv~~SS~a~~~g~~~~~~YaAaka~l~~la  168 (259)
T d2fr1a1          89 PLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLTAFVLFSSFASAFGAPGLGGYAPGNAYLDGLA  168 (259)
T ss_dssp             CEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCSEEEEEEEHHHHTCCTTCTTTHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCceEeeecchhhccCCcccHHHHHHHHhHHHHH
Confidence            37999999996542          23467889999999999988887889999999322233445678999999999998


Q ss_pred             HHhc
Q 028890          191 ACQS  194 (202)
Q Consensus       191 ~~~~  194 (202)
                      +.+.
T Consensus       169 ~~~~  172 (259)
T d2fr1a1         169 QQRR  172 (259)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=99.77  E-value=1.4e-18  Score=136.22  Aligned_cols=141  Identities=16%  Similarity=0.118  Sum_probs=110.0

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+++||+++++.|+++|++|++++|+..+...      .....++.++++|++|++++.++++       
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g   95 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG   95 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999887543211      2234678999999999998887765       


Q ss_pred             CccEeEEccccCC----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEecc-ccCcCCcCCcchHHHHHHHH
Q 028890          121 GVTAVISCVGGFG----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAA-DFGVANYLLQGYYEGKVLSS  187 (202)
Q Consensus       121 ~~d~vi~~a~~~~----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E  187 (202)
                      ++|++|||+|...          .+...+++|+.+++.+.+++...  .-+++++++|. ....+......|+.+|.+.+
T Consensus        96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~~~~~~~~~~Y~asKaal~  175 (272)
T d1g0oa_          96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQAKAVPKHAVYSGSKGAIE  175 (272)
T ss_dssp             CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGTCSSCSSCHHHHHHHHHHH
T ss_pred             CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence            5899999999643          23457789999999988888653  23578888873 23334445567999999999


Q ss_pred             HHHHHhc
Q 028890          188 DVAACQS  194 (202)
Q Consensus       188 ~~~~~~~  194 (202)
                      .+++.++
T Consensus       176 ~ltk~lA  182 (272)
T d1g0oa_         176 TFARCMA  182 (272)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988753

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.77  E-value=7.5e-19  Score=136.57  Aligned_cols=141  Identities=11%  Similarity=0.044  Sum_probs=107.9

Q ss_pred             CCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|  +||++++++|+++|++|++.+|++.....    .....+..++++|++|+++++++++       
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   85 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAFG   85 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHhhhccCcccccccccCCHHHHHHHHHHHHHhcC
Confidence            5789999999987  89999999999999999988887533111    1123467889999999998887765       


Q ss_pred             CccEeEEccccCC--------------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFG--------------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~--------------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      ++|++|||||...              ++...+++|+.++..+.+++...  +-+++|++||.....+.+....|+.+|.
T Consensus        86 ~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~isS~~~~~~~~~~~~Y~asKa  165 (256)
T d1ulua_          86 GLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTYYASEKVVPKYNVMAIAKA  165 (256)
T ss_dssp             SEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEECGGGTSBCTTCHHHHHHHH
T ss_pred             CceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEeehHhcCCCCCchHHHHHHH
Confidence            5899999998532              12336788999998888877542  1258999999433344555678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       166 al~~ltr~lA  175 (256)
T d1ulua_         166 ALEASVRYLA  175 (256)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD)
species: Salmonella enterica serovar typhimurium [TaxId: 90371]

Probab=99.77  E-value=4.7e-19  Score=139.13  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=96.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~-  133 (202)
                      ||||||||+||||++|+++|.++|+.| ++++....            +.+|+.|.+.++++++  ++|+|||+||... 
T Consensus         1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~~------------~~~Dl~~~~~~~~~i~~~~~D~Vih~Aa~~~~   67 (298)
T d1n2sa_           1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSKE------------FCGDFSNPKGVAETVRKLRPDVIVNAAAHTAV   67 (298)
T ss_dssp             CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCSS------------SCCCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCcc------------ccCcCCCHHHHHHHHHHcCCCEEEEecccccc
Confidence            689999999999999999999988654 44544321            2369999999999887  4699999998643 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHHHhc
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           .+...+..|+.++.++++++++.+. +++++|| ..|+..          ..+.+.|+.+|..+|.+++.+.
T Consensus        68 ~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~-~~~~~ss~~~~~~~~~~~~~E~~~~~p~~~y~~~k~~~e~~~~~~~  143 (298)
T d1n2sa_          68 DKAESEPELAQLLNATSVEAIAKAANETGA-WVVHYSTDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNC  143 (298)
T ss_dssp             HHHTTCHHHHHHHHTHHHHHHHHHHTTTTC-EEEEEEEGGGSCCCTTCCBCTTSCCCCSSHHHHHHHHHHHHHHHHC
T ss_pred             cccccCccccccccccccccchhhhhcccc-ccccccccccccCCCCCCCccccccCCCchHhhhhhhhhhhHHhhh
Confidence                 2345778899999999999988875 7777777 444321          2345789999999999988754

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=2.9e-18  Score=131.71  Aligned_cols=135  Identities=17%  Similarity=0.159  Sum_probs=99.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-------hc--CccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-------LD--GVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-------~~--~~d~v  125 (202)
                      ++|+|+||||+|+||+++++.|+++|++|+++++......     .....+.+|..+.+..+.+       +.  ++|++
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~l   75 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEA-----SASVIVKMTDSFTEQADQVTAEVGKLLGDQKVDAI   75 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTTS-----SEEEECCCCSCHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccccc-----cccceeecccCcHHHHHHHHHHHHHHhCCCCceEE
Confidence            4789999999999999999999999999999988754421     2334445565554443332       22  48999


Q ss_pred             EEccccCC-----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          126 ISCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       126 i~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||||...           .++..+++|+.++.++.+++.+.  +-+++|++||...-.+.+....|+.||.+.+.+.+.
T Consensus        76 InnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~~~~~~~~~Y~asKaal~~lt~~  155 (236)
T d1dhra_          76 LCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAALDGTPGMIGYGMAKGAVHQLCQS  155 (236)
T ss_dssp             EECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHH
T ss_pred             EECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHcCCccCCcccHHHHHHHHHHHHH
Confidence            99998532           12446789999999888887542  235999999943333445567899999999999998


Q ss_pred             hc
Q 028890          193 QS  194 (202)
Q Consensus       193 ~~  194 (202)
                      ++
T Consensus       156 la  157 (236)
T d1dhra_         156 LA  157 (236)
T ss_dssp             HT
T ss_pred             HH
Confidence            75

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.75  E-value=3.1e-18  Score=133.30  Aligned_cols=142  Identities=13%  Similarity=0.044  Sum_probs=109.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHH---CCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhc--
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~---~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      ..++|+++||||+++||++++++|.+   +|++|++++|+.+....       .....++.++.+|++|+++++++++  
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dvs~~~~v~~l~~~~   82 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELGAQQPDLKVVLAAADLGTEAGVQRLLSAV   82 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHHHHCTTSEEEEEECCTTSHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEEEccCCCHHHHHHHHHHH
Confidence            35788999999999999999999986   79999999998653111       1123478899999999998887763  


Q ss_pred             ---------CccEeEEccccCC-------------CCccchhhhHHHHHHHHHHHHHc----C--CCEEEEEeccccCcC
Q 028890          121 ---------GVTAVISCVGGFG-------------SNSYMYKINGTANINAIRAASEK----G--VKRFVYISAADFGVA  172 (202)
Q Consensus       121 ---------~~d~vi~~a~~~~-------------~~~~~~~~n~~~~~~~~~~~~~~----~--~~~~v~~SS~~~~~~  172 (202)
                               .+|++|+|||...             .+...+++|+.++..+.+++...    +  .+++|++||...-.+
T Consensus        83 ~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~~~g~Iv~isS~~~~~~  162 (259)
T d1oaaa_          83 RELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPGLSKTVVNISSLCALQP  162 (259)
T ss_dssp             HHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTTCEEEEEEECCGGGTSC
T ss_pred             HHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcccccccccccccCC
Confidence                     3579999998532             12356789999999998888543    2  248999999433334


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .+....|+.+|++.+.+.+.++
T Consensus       163 ~~~~~~Y~asKaal~~lt~~la  184 (259)
T d1oaaa_         163 YKGWGLYCAGKAARDMLYQVLA  184 (259)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHHHHHH
Confidence            4556789999999999998865

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.75  E-value=8.3e-18  Score=130.17  Aligned_cols=140  Identities=14%  Similarity=0.118  Sum_probs=103.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhc---------C
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALD---------G  121 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~---------~  121 (202)
                      ++|+|+||||+++||.+++++|+++|+  +|++..|+.++..  ......++.++.+|++|+++++++++         +
T Consensus         2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~~~~~   81 (250)
T d1yo6a1           2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDG   81 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCTTEEEEECCTTCHHHHHHHHHHHHHHHGGGC
T ss_pred             cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCCceEEEEEecCCHHHHHHHHHHHHHHhCCCC
Confidence            358999999999999999999999996  6888888865422  22334689999999999988877654         3


Q ss_pred             ccEeEEccccCCC-----------CccchhhhHHHHHHHHHHHH----Hc-----------CCCEEEEEeccc-c-----
Q 028890          122 VTAVISCVGGFGS-----------NSYMYKINGTANINAIRAAS----EK-----------GVKRFVYISAAD-F-----  169 (202)
Q Consensus       122 ~d~vi~~a~~~~~-----------~~~~~~~n~~~~~~~~~~~~----~~-----------~~~~~v~~SS~~-~-----  169 (202)
                      +|++|||||....           +...+++|+.|+..+.+++.    +.           ...+++.+|+.. .     
T Consensus        82 idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~  161 (250)
T d1yo6a1          82 LSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT  161 (250)
T ss_dssp             CCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCCTTTCEEEEECCGGGCSTTCC
T ss_pred             eEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccccceeccccccccccccccCCc
Confidence            8999999996431           23578999999988776652    21           124788888721 1     


Q ss_pred             -CcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          170 -GVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       170 -~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                       +....+...|+.||++...+.+.++
T Consensus       162 ~~~~~~~~~aY~aSKaal~~l~~~la  187 (250)
T d1yo6a1         162 SGSAQFPVLAYRMSKAAINMFGRTLA  187 (250)
T ss_dssp             STTSSSCBHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHH
Confidence             1122334569999999999988764

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=99.75  E-value=4e-18  Score=134.85  Aligned_cols=142  Identities=12%  Similarity=0.010  Sum_probs=104.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc------ccccCCCceeEEEccCCCHhhHHHHhc------
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNLLSSDSWKEALD------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------~~~~~~~~~~~~~~D~~~~~~~~~~~~------  120 (202)
                      ..++|+++||||+|+||++++++|+++|++|++++|+..+.      ........+.++.+|++++++++++++      
T Consensus        22 ~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          22 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence            46889999999999999999999999999999999986431      111224678899999999998877664      


Q ss_pred             -CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HH-cCCCEEEEEeccccCcCCcCCcchHHHHH
Q 028890          121 -GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SE-KGVKRFVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 -~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~-~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                       ++|++|||||....          +...+.+|..+...+...+    .. .+...++.+||............|+.+|.
T Consensus       102 g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~~~~~~~~~~~~YsasKa  181 (294)
T d1w6ua_         102 GHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTIYAETGSGFVVPSASAKA  181 (294)
T ss_dssp             CSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCTHHHHCCTTCHHHHHHHH
T ss_pred             cccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccchhhhcccccchHHHHHH
Confidence             58999999996432          2334566766666554443    22 23346666666433334455678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+.+.++
T Consensus       182 al~~ltk~lA  191 (294)
T d1w6ua_         182 GVEAMSKSLA  191 (294)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=4e-18  Score=130.83  Aligned_cols=134  Identities=22%  Similarity=0.232  Sum_probs=97.6

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH-------HHh--cCccEeE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK-------EAL--DGVTAVI  126 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~-------~~~--~~~d~vi  126 (202)
                      ..||+||||+++||++++++|+++|++|++++|+.....     .....+.+|+.+.+...       ..+  .++|++|
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iD~li   76 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA-----DSNILVDGNKNWTEQEQSILEQTASSLQGSQVDGVF   76 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS-----SEEEECCTTSCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc-----cccceeccccCchhHHHHHHHHHHHHhcCCCeeEEE
Confidence            358999999999999999999999999999999865421     22334455665443322       222  2489999


Q ss_pred             EccccCC-----------CCccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          127 SCVGGFG-----------SNSYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       127 ~~a~~~~-----------~~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ||||...           .++..+++|+.++..+.+++...  +-+++|++||.....+.+...+|+.+|++.+.+.+.+
T Consensus        77 nnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~~~~~~~~Y~asKaal~~l~~~l  156 (235)
T d1ooea_          77 CVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMGPTPSMIGYGMAKAAVHHLTSSL  156 (235)
T ss_dssp             ECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGSCCTTBHHHHHHHHHHHHHHHHH
T ss_pred             ECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcCCcccccchHHHHHHHHHHHHHH
Confidence            9999532           12346788999998888877553  2258999999433334455688999999999999987


Q ss_pred             c
Q 028890          194 S  194 (202)
Q Consensus       194 ~  194 (202)
                      +
T Consensus       157 a  157 (235)
T d1ooea_         157 A  157 (235)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.74  E-value=4.5e-19  Score=137.63  Aligned_cols=136  Identities=15%  Similarity=0.023  Sum_probs=100.9

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-------CccEeEEccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-------GVTAVISCVG  130 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d~vi~~a~  130 (202)
                      +++||||+++||+++++.|+++|++|++.+|+.+...+ .......+..+|+.|+++++++++       ++|++|||||
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~-~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~G~iDiLVnNAg   80 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDE-LEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDI   80 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHH-HHHHHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH-HHhhhCcEEEeccCCHHHHHHHHHHHHHHcCCCCEEEECCc
Confidence            78999999999999999999999999999987654211 111122345678888776666554       6899999998


Q ss_pred             cCC-----------CCccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          131 GFG-----------SNSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       131 ~~~-----------~~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      ...           ++...+++|+.+++.+.+++    ++++-+++|++||...-.+......|+.+|.+.+.+.+.++
T Consensus        81 ~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G~IV~isS~~~~~~~~~~~~Y~asKaal~~lt~~lA  159 (252)
T d1zmta1          81 FAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALS  159 (252)
T ss_dssp             CCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEECCSTTTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccceeecccccccccccccccccccccccHHHHHHHHH
Confidence            532           13456788999988777664    45566799999994333334445789999999999988764

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=6.1e-18  Score=128.44  Aligned_cols=136  Identities=18%  Similarity=0.188  Sum_probs=104.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCe--EEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLT--VASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~--V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .+++|+||||+|+||++++++|+++|++  |+++.|++.+.  .....+++++.+|+.+.+.+.++++++|+|||+++..
T Consensus         2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~~~   79 (252)
T d2q46a1           2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK--EKIGGEADVFIGDITDADSINPAFQGIDALVILTSAV   79 (252)
T ss_dssp             SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH--HHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCCC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH--HhccCCcEEEEeeeccccccccccccceeeEEEEeec
Confidence            5789999999999999999999999975  56677765432  2234688999999999999999999999999999853


Q ss_pred             C-------------------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCc-----CCcchHHHHHHHHH
Q 028890          133 G-------------------SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANY-----LLQGYYEGKVLSSD  188 (202)
Q Consensus       133 ~-------------------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~-----~~~~Y~~sK~~~E~  188 (202)
                      .                   .......+|+.++.++++.+.....+.+.+.|+.....+..     ....|...+...+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (252)
T d2q46a1          80 PKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVKHIVVVGSMGGTNPDHPLNKLGNGNILVWKRKAEQ  159 (252)
T ss_dssp             CEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCSEEEEEEETTTTCTTCGGGGGGGCCHHHHHHHHHH
T ss_pred             cccccccchhhhhhcccccccchhhhccccccceeeccccccccccccccccccccCCCCcccccccccchhhhhhhhhh
Confidence            2                   12334577899999999999998888999998832222222     23457777777776


Q ss_pred             HHHH
Q 028890          189 VAAC  192 (202)
Q Consensus       189 ~~~~  192 (202)
                      +...
T Consensus       160 ~~~~  163 (252)
T d2q46a1         160 YLAD  163 (252)
T ss_dssp             HHHH
T ss_pred             hhhc
Confidence            6554

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.6e-18  Score=134.83  Aligned_cols=111  Identities=19%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             CCeE-EEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCccc-----ccCCCceeEEEccCCCHhhHHHHhc-------C
Q 028890           56 SEKL-LVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLR-----DSWANNVIWHQGNLLSSDSWKEALD-------G  121 (202)
Q Consensus        56 ~~~v-lVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~-----~~~~~~~~~~~~D~~~~~~~~~~~~-------~  121 (202)
                      +|+| +||||+++||.+++++|+++ |++|++.+|+.++...     .....++.++.+|++|.++++++++       +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            4555 89999999999999999986 8999999998654211     1224578999999999998877665       5


Q ss_pred             ccEeEEccccCCC----------CccchhhhHHHHHHHHHHHHHc--CCCEEEEEec
Q 028890          122 VTAVISCVGGFGS----------NSYMYKINGTANINAIRAASEK--GVKRFVYISA  166 (202)
Q Consensus       122 ~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS  166 (202)
                      +|++|||||....          +...+++|+.|+..+.+.+...  .-+++|++||
T Consensus        82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1          82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred             cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Confidence            8999999996431          2346789999999998888542  1258999999

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=99.74  E-value=6.9e-18  Score=133.01  Aligned_cols=133  Identities=18%  Similarity=0.104  Sum_probs=104.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      +++||+||||||+||++++++|+++||+|++++|+......       .....+++++.+|+.|.+.+.+++.+++++++
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~   81 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVIS   81 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhh
Confidence            45689999999999999999999999999999997654211       12346799999999999999999999999999


Q ss_pred             ccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEecc-ccCc----CCcCCcchHHHHHHHHHHHHH
Q 028890          128 CVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAA-DFGV----ANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       128 ~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~-~~~~----~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      +++...     ...|..+..++++++++.+..++++.||. .+..    +..+...|...|..++...+.
T Consensus        82 ~~~~~~-----~~~~~~~~~~~l~~a~~~~~~~~v~~Ss~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (312)
T d1qyda_          82 ALAGGV-----LSHHILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQPGSITFIDKRKVRRAIEA  146 (312)
T ss_dssp             CCCCSS-----SSTTTTTHHHHHHHHHHSCCCSEEECSCCSSCTTSCCCCCSSTTHHHHHHHHHHHHHHH
T ss_pred             hhhhcc-----cccchhhhhHHHHHHHHhcCCcEEEEeeccccCCCcccccchhhhhhHHHHHHHHhhcc
Confidence            997532     34556677788999998887788888873 2222    223445678888888877665

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=99.74  E-value=2.2e-17  Score=133.15  Aligned_cols=133  Identities=16%  Similarity=0.089  Sum_probs=105.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCH-hhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSS-DSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~-~~~~~~~~~~d~vi~~a~~  131 (202)
                      ++|+|+||||||+||++++++|+++||+|+++.|+......  .....+++++.+|+.|. +.++.++.++|+++++...
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~   81 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   81 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeeccc
Confidence            57899999999999999999999999999999998765322  12346899999999885 4577889999999888654


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEecccc--CcCCcCCcchHHHHHHHHHHHHHh
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADF--GVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~--~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      .      ...++..+.++++++++.+++++++.||...  ........+|..+|...|...++.
T Consensus        82 ~------~~~~~~~~~~~~~aa~~agv~~~v~~Ss~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  139 (350)
T d1xgka_          82 Q------AGDEIAIGKDLADAAKRAGTIQHYIYSSMPDHSLYGPWPAVPMWAPKFTVENYVRQL  139 (350)
T ss_dssp             T------TSCHHHHHHHHHHHHHHHSCCSEEEEEECCCGGGTSSCCCCTTTHHHHHHHHHHHTS
T ss_pred             c------cchhhhhhhHHHHHHHHhCCCceEEEeeccccccCCcccchhhhhhHHHHHHHHHhh
Confidence            2      3456777889999999999988888888322  223344567889999999887763

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=7.1e-18  Score=131.95  Aligned_cols=140  Identities=16%  Similarity=0.095  Sum_probs=106.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------cccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------RDSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------~~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+++||++++++|+++|++|++++|+.++..      .......+..+.+|+.+.+.+....+       
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   91 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLMG   91 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999999999865311      11234567888999998776655443       


Q ss_pred             CccEeEEccccCCC----------CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          121 GVTAVISCVGGFGS----------NSYMYKINGTANINAIRAA----SEKGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       121 ~~d~vi~~a~~~~~----------~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      .+|++++|||....          +...+++|+.++..+.+.+    ++.+ +++|++||.....+.+....|+.||++.
T Consensus        92 ~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~-G~ii~isS~~~~~~~p~~~~Y~asKaal  170 (269)
T d1xu9a_          92 GLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSN-GSIVVVSSLAGKVAYPMVAAYSASKFAL  170 (269)
T ss_dssp             SCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-CEEEEEEEGGGTSCCTTCHHHHHHHHHH
T ss_pred             CccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcC-CcceEeccchhcCCCCCchHHHHHHHHH
Confidence            58999999986431          2346788998888766655    3333 6999999944334445567999999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       171 ~~~~~~La  178 (269)
T d1xu9a_         171 DGFFSSIR  178 (269)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99888764

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.8e-17  Score=125.54  Aligned_cols=142  Identities=13%  Similarity=0.124  Sum_probs=107.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCCCceeEEEccCCCHhhHHHHhc-------Ccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWANNVIWHQGNLLSSDSWKEALD-------GVT  123 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~~~~~~~~~D~~~~~~~~~~~~-------~~d  123 (202)
                      ..++|+++||||+++||.+++++|+++|++|++++|+.+....  .....+.....+|+.+.+.+++...       ..|
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVD   81 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCCccccccccccccccccccccccccccccc
Confidence            4589999999999999999999999999999999998765221  2224677888999998776655443       478


Q ss_pred             EeEEccccCC----------------CCccchhhhHHHHHHHHHHHHHc----------CCCEEEEEeccccCcCCcCCc
Q 028890          124 AVISCVGGFG----------------SNSYMYKINGTANINAIRAASEK----------GVKRFVYISAADFGVANYLLQ  177 (202)
Q Consensus       124 ~vi~~a~~~~----------------~~~~~~~~n~~~~~~~~~~~~~~----------~~~~~v~~SS~~~~~~~~~~~  177 (202)
                      .++++++...                .+...+++|+.++.++.+++...          +.+++|++||.....+.+...
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~  161 (248)
T d2o23a1          82 VAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQRGVIINTASVAAFEGQVGQA  161 (248)
T ss_dssp             EEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCEEEEEECCTHHHHCCTTCH
T ss_pred             ccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCCceEEEEecchhhccCCCCch
Confidence            8888876321                13456789999999988887442          234899999943333445567


Q ss_pred             chHHHHHHHHHHHHHhc
Q 028890          178 GYYEGKVLSSDVAACQS  194 (202)
Q Consensus       178 ~Y~~sK~~~E~~~~~~~  194 (202)
                      .|+.+|.+.+.+.+.++
T Consensus       162 ~Y~asKaal~~lt~~la  178 (248)
T d2o23a1         162 AYSASKGGIVGMTLPIA  178 (248)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            89999999999998864

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.71  E-value=5.3e-17  Score=126.49  Aligned_cols=121  Identities=21%  Similarity=0.245  Sum_probs=96.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEccccCC-
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGGFG-  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~~~-  133 (202)
                      |||+||||+||||++|+++|.++||+|++++|+.                +|+.|.++++++++  ++|+|||+|+... 
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~----------------~D~~d~~~~~~~l~~~~~d~vih~a~~~~~   65 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD----------------LDITNVLAVNKFFNEKKPNVVINCAAHTAV   65 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT----------------CCTTCHHHHHHHHHHHCCSEEEECCCCCCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh----------------ccCCCHHHHHHHHHHcCCCEEEeecccccc
Confidence            6899999999999999999999999999999863                48899999999887  5799999998654 


Q ss_pred             -----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec-cccCcC----------CcCCcchHHHHHHHHHHHHHhc
Q 028890          134 -----SNSYMYKINGTANINAIRAASEKGVKRFVYISA-ADFGVA----------NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       134 -----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS-~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           .+......|+.....+.+.+...+. .+++.|| .+|+..          ..+...|+.+|...|.+++.+.
T Consensus        66 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~~~ss~~v~~~~~~~~~~e~~~~~~~~~~~~~k~~~e~~~~~~~  141 (281)
T d1vl0a_          66 DKCEEQYDLAYKINAIGPKNLAAAAYSVGA-EIVQISTDYVFDGEAKEPITEFDEVNPQSAYGKTKLEGENFVKALN  141 (281)
T ss_dssp             HHHHHCHHHHHHHHTHHHHHHHHHHHHHTC-EEEEEEEGGGSCSCCSSCBCTTSCCCCCSHHHHHHHHHHHHHHHHC
T ss_pred             ccccccchhhcccccccccccccccccccc-cccccccceeeeccccccccccccccchhhhhhhhhHHHHHHHHhC
Confidence                 2244567778888888888877764 6777776 444432          2345679999999999998764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=99.68  E-value=2.5e-16  Score=123.15  Aligned_cols=130  Identities=25%  Similarity=0.344  Sum_probs=99.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--------ccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      ++|||+||||||+||++++++|+++|++|++++|+......        .....+++++.+|+.+.+.+.+.+++++.+|
T Consensus         2 ~kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi   81 (307)
T d1qyca_           2 SRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVI   81 (307)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeee
Confidence            56899999999999999999999999999999998654211        1224578999999999999999999999999


Q ss_pred             EccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCc----CCcchHHHHHHHHHHHHHh
Q 028890          127 SCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANY----LLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       127 ~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~----~~~~Y~~sK~~~E~~~~~~  193 (202)
                      |+++..         +..+..++++++...+.+++++.|+..+.....    ....|...+...+..++.+
T Consensus        82 ~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (307)
T d1qyca_          82 STVGSL---------QIESQVNIIKAIKEVGTVKRFFPSEFGNDVDNVHAVEPAKSVFEVKAKVRRAIEAE  143 (307)
T ss_dssp             ECCCGG---------GSGGGHHHHHHHHHHCCCSEEECSCCSSCTTSCCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             eccccc---------ccchhhHHHHHHHHhccccceeeeccccccccccccccccccccccccccchhhcc
Confidence            998753         334455778899898888999988843332222    2234666667777766653

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=99.66  E-value=4.2e-16  Score=122.18  Aligned_cols=139  Identities=12%  Similarity=0.037  Sum_probs=97.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCc-----------------eeEEEccCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANN-----------------VIWHQGNLLS  111 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~-----------------~~~~~~D~~~  111 (202)
                      ++.++||||+++||+++++.|+++|++|++.+|+......       ......                 .....+|+++
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~dv~~   81 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLNARRPNSAITVQADLSNVATAPVSGADGSAPVTL   81 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSCBCCCC----CCCBCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHHhhcCCceEEEEeecccccccccccccccccCCC
Confidence            5689999999999999999999999999998876533111       111122                 3345567888


Q ss_pred             HhhHHHHhc-------CccEeEEccccCCC----------Cc--------------cchhhhHHHHHHHHHHHHH-----
Q 028890          112 SDSWKEALD-------GVTAVISCVGGFGS----------NS--------------YMYKINGTANINAIRAASE-----  155 (202)
Q Consensus       112 ~~~~~~~~~-------~~d~vi~~a~~~~~----------~~--------------~~~~~n~~~~~~~~~~~~~-----  155 (202)
                      +++++++++       ++|++|||||....          ++              ..+.+|+.++..+.+++.+     
T Consensus        82 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~  161 (284)
T d1e7wa_          82 FTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIAPYFLIKAFAHRVAGT  161 (284)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheeeeeeeeccccchhhhh
Confidence            888877664       68999999996431          11              2467788888877776532     


Q ss_pred             -----cCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          156 -----KGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       156 -----~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                           .+..++++++|.....+......|+.+|.+.+.+.+.++
T Consensus       162 ~~~~~~~~~~ii~~~s~~~~~~~~~~~~Y~asKaal~~lt~~lA  205 (284)
T d1e7wa_         162 PAKHRGTNYSIINMVDAMTNQPLLGYTIYTMAKGALEGLTRSAA  205 (284)
T ss_dssp             CGGGSCSCEEEEEECCTTTTSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCCcccccccccccCCccceeeeccccccchhhhHHHH
Confidence                 123478888875555555666789999999999988764

>d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: ADP-L-glycero-D-mannoheptose 6-epimerase
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.3e-15  Score=119.55  Aligned_cols=133  Identities=19%  Similarity=0.225  Sum_probs=88.7

Q ss_pred             EEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc-ccCCCceeEEEccCCCHhh-HHHHh-----cCccEeEEccc
Q 028890           59 LLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR-DSWANNVIWHQGNLLSSDS-WKEAL-----DGVTAVISCVG  130 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~-~~~~~~~~~~~~D~~~~~~-~~~~~-----~~~d~vi~~a~  130 (202)
                      ||||||+||||++|+++|+++|+ +|+++++-...... ......    ..|..+.+. .....     ..+++|+|.|+
T Consensus         2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aa   77 (307)
T d1eq2a_           2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLN----IADYMDKEDFLIQIMAGEEFGDVEAIFHEGA   77 (307)
T ss_dssp             EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGHHHHTSC----CSEEEEHHHHHHHHHTTCCCSSCCEEEECCS
T ss_pred             EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhhcccccc----hhhhccchHHHHHHhhhhcccchhhhhhhcc
Confidence            89999999999999999999996 79988743322111 111111    122222222 22222     35789999998


Q ss_pred             cCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcC----------CcCCcchHHHHHHHHHHHHHhcc
Q 028890          131 GFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVA----------NYLLQGYYEGKVLSSDVAACQSV  195 (202)
Q Consensus       131 ~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~----------~~~~~~Y~~sK~~~E~~~~~~~~  195 (202)
                      ...    +.......++.++.+++++++..+++.+++.|+.++..+          ..+.+.|+.+|..+|.+++.|..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~v~~ss~~~~~~~~~~~~~~~~~~~~~~~Y~~~K~~~e~~~~~~~~  156 (307)
T d1eq2a_          78 CSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILP  156 (307)
T ss_dssp             CCCTTCCCHHHHHHHTHHHHHHHHHHHHHHTCCEEEEEEGGGGTTCCSCBCSSGGGCCCSSHHHHHHHHHHHHHHHHGG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccc
Confidence            543    223455777999999999999999865555555443322          23567899999999999998753

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.60  E-value=4.3e-15  Score=113.53  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=96.2

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc------CccEeEEccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD------GVTAVISCVG  130 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------~~d~vi~~a~  130 (202)
                      |+++||||+++||++++++|+++|++|++++|+.+.       .+...+++|+.+......+..      ..+.++++++
T Consensus         2 K~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~-------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKARGYRVVVLDLRREG-------EDLIYVEGDVTREEDVRRAVARAQEEAPLFAVVSAAG   74 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS-------SSSEEEECCTTCHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc-------ccceEeeccccchhhhHHHHHhhhccccccchhhhhh
Confidence            799999999999999999999999999999997643       356778899988776655543      3455555554


Q ss_pred             cCC--------------CCccchhhhHHHHHHHHHHHHH----------cCCCEEEEEeccccCcCCcCCcchHHHHHHH
Q 028890          131 GFG--------------SNSYMYKINGTANINAIRAASE----------KGVKRFVYISAADFGVANYLLQGYYEGKVLS  186 (202)
Q Consensus       131 ~~~--------------~~~~~~~~n~~~~~~~~~~~~~----------~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~  186 (202)
                      ...              .++..+++|+.+...+.+.+..          .+..++|++||.....+......|+.+|++.
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G~Ii~isS~~~~~~~~~~~~Y~asKaal  154 (241)
T d1uaya_          75 VGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVNTASVAAFEGQIGQAAYAASKGGV  154 (241)
T ss_dssp             CCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEEECCTHHHHCCTTCHHHHHHHHHH
T ss_pred             ccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCceeeeeecchhhccCCCCchhhHHHHHHH
Confidence            211              1234668888888776665532          2345899999943233445567899999999


Q ss_pred             HHHHHHhc
Q 028890          187 SDVAACQS  194 (202)
Q Consensus       187 E~~~~~~~  194 (202)
                      +.+.+.++
T Consensus       155 ~~lt~~lA  162 (241)
T d1uaya_         155 VALTLPAA  162 (241)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=7.3e-15  Score=113.60  Aligned_cols=141  Identities=11%  Similarity=0.017  Sum_probs=100.8

Q ss_pred             CCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|  +||+++++.|+++|++|++.+|++.....    ............|+.+..++...++       
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   82 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHhhcCCcceeecccchHHHHHHHHHHhhhccc
Confidence            5789999999998  89999999999999999999998543211    1223567788899998877666554       


Q ss_pred             CccEeEEccccCCCC---------------ccchhhhHHHHHHHHHHHHHc--CCCEEEEEeccccCcCCcCCcchHHHH
Q 028890          121 GVTAVISCVGGFGSN---------------SYMYKINGTANINAIRAASEK--GVKRFVYISAADFGVANYLLQGYYEGK  183 (202)
Q Consensus       121 ~~d~vi~~a~~~~~~---------------~~~~~~n~~~~~~~~~~~~~~--~~~~~v~~SS~~~~~~~~~~~~Y~~sK  183 (202)
                      .+|++|||++.....               ...+.++..+...+.+++...  +-+.++++||.....+.+....|+.+|
T Consensus        83 ~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~iss~~~~~~~~~~~~Y~~sK  162 (258)
T d1qsga_          83 KFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLSYLGAERAIPNYNVMGLAK  162 (258)
T ss_dssp             SEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTTTHHHHHH
T ss_pred             ccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEecchhhccCCCCcHHHHHHH
Confidence            479999999854211               123345566666666665442  224688888843333444557899999


Q ss_pred             HHHHHHHHHhc
Q 028890          184 VLSSDVAACQS  194 (202)
Q Consensus       184 ~~~E~~~~~~~  194 (202)
                      .+.+.+++.++
T Consensus       163 aal~~ltr~lA  173 (258)
T d1qsga_         163 ASLEANVRYMA  173 (258)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988764

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=99.55  E-value=1.6e-14  Score=112.09  Aligned_cols=142  Identities=12%  Similarity=0.002  Sum_probs=95.8

Q ss_pred             CCCCCeEEEEccC--ChhHHHHHHHHHHCCCeEEEEecCCCCc---ccccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           53 PPPSEKLLVLGGN--GFVGSHICREALDRGLTVASLSRSGRSS---LRDSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        53 ~~~~~~vlVtGa~--G~iG~~l~~~Ll~~g~~V~~l~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      ..++|+++||||+  .+||.+++++|+++|++|++++|+..+.   .......+...+++|+.+++++..+++       
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~~~~~~~v~~~~~   82 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIG   82 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCceeeEeeecccccccccccchhhhccc
Confidence            4578999999964  4799999999999999999999876542   123334578889999999876655433       


Q ss_pred             ---CccEeEEccccCC----CCc-----------cchhhhHHHHHHHHHHHHHcC-CCEEEEEeccccCcCCcCCcchHH
Q 028890          121 ---GVTAVISCVGGFG----SNS-----------YMYKINGTANINAIRAASEKG-VKRFVYISAADFGVANYLLQGYYE  181 (202)
Q Consensus       121 ---~~d~vi~~a~~~~----~~~-----------~~~~~n~~~~~~~~~~~~~~~-~~~~v~~SS~~~~~~~~~~~~Y~~  181 (202)
                         .+|+++||+|...    ...           ..+.++........+...... ....++++|.......+....|+.
T Consensus        83 ~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~p~~~~y~~  162 (268)
T d2h7ma1          83 AGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIVGMDFDPSRAMPAYNWMTV  162 (268)
T ss_dssp             TTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECCCSSCCTTTHHHHH
T ss_pred             cCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhcccccccccccccccccCcccchhhc
Confidence               3799999998532    111           123344444444444443322 224444544333344455678999


Q ss_pred             HHHHHHHHHHHhc
Q 028890          182 GKVLSSDVAACQS  194 (202)
Q Consensus       182 sK~~~E~~~~~~~  194 (202)
                      +|.+.+.+.+.++
T Consensus       163 sK~a~~~ltr~lA  175 (268)
T d2h7ma1         163 AKSALESVNRFVA  175 (268)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             cccchhhccccch
Confidence            9999999998764

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.55  E-value=3.9e-17  Score=121.52  Aligned_cols=141  Identities=16%  Similarity=0.027  Sum_probs=92.2

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      ...++|+++||||+|+||+.+++.|+++|++|++++|+.++...    .....++.+..+|+.|.+++.+++.++|+|||
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin   98 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFT   98 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeee
Confidence            35689999999999999999999999999999999998654211    11123567788999999999999999999999


Q ss_pred             ccccCCC------CccchhhhHHHHHHHHHHHHHcCC---CEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHH
Q 028890          128 CVGGFGS------NSYMYKINGTANINAIRAASEKGV---KRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAAC  192 (202)
Q Consensus       128 ~a~~~~~------~~~~~~~n~~~~~~~~~~~~~~~~---~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~  192 (202)
                      |||..-.      +...+++|+.+..+.+..+.....   .....+++ ..++........|..+|.+.++++++
T Consensus        99 ~Ag~g~~~~~~e~~~~~~~~nv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~y~~sk~a~~~l~~s  173 (191)
T d1luaa1          99 AGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHRACIAKLFES  173 (191)
T ss_dssp             CCCTTCCCBCHHHHHTCTTCCEEEECCCSSSCSBTTCCTTCEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cCccccccCCHHHHHhhhcceeehhHhhHHHHHHHhhhhccCcEEecceEEEeccCcCcHHHHHHHHHHHHHHhc
Confidence            9985221      222333443333322222111111   12222222 23333222234699999998887654

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=99.55  E-value=2.2e-14  Score=111.76  Aligned_cols=141  Identities=10%  Similarity=0.000  Sum_probs=93.8

Q ss_pred             CCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCCccc----ccCCCceeEEEccCCCHhhHHHHhc-------
Q 028890           54 PPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRSSLR----DSWANNVIWHQGNLLSSDSWKEALD-------  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~----~~~~~~~~~~~~D~~~~~~~~~~~~-------  120 (202)
                      .++|+++||||+|  +||.+++++|+++|++|++++|++.....    ........+..+|+++++++.++++       
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~g   82 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   82 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHHHcC
Confidence            5789999999877  89999999999999999999998543111    1123567788999999888777664       


Q ss_pred             CccEeEEccccCCCC----------ccchhh----hHHHHHHHHHHHHHc-CCCE-EEEEeccccCcCCcCCcchHHHHH
Q 028890          121 GVTAVISCVGGFGSN----------SYMYKI----NGTANINAIRAASEK-GVKR-FVYISAADFGVANYLLQGYYEGKV  184 (202)
Q Consensus       121 ~~d~vi~~a~~~~~~----------~~~~~~----n~~~~~~~~~~~~~~-~~~~-~v~~SS~~~~~~~~~~~~Y~~sK~  184 (202)
                      .+|++|||+|.....          ...+..    +............+. +... ++.+|+.....+......|+.+|.
T Consensus        83 ~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~~~~~~~~~~~~~y~asK~  162 (274)
T d2pd4a1          83 SLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSYLGSTKYMAHYNVMGLAKA  162 (274)
T ss_dssp             CEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEECGGGTSBCTTCHHHHHHHH
T ss_pred             CCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeecccccccccccchhhhHHHH
Confidence            589999999964311          111111    122222333333222 2234 444444433344555678999999


Q ss_pred             HHHHHHHHhc
Q 028890          185 LSSDVAACQS  194 (202)
Q Consensus       185 ~~E~~~~~~~  194 (202)
                      +.+.+++..+
T Consensus       163 al~~ltr~lA  172 (274)
T d2pd4a1         163 ALESAVRYLA  172 (274)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHhhH
Confidence            9999988753

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.50  E-value=9.5e-14  Score=107.41  Aligned_cols=138  Identities=14%  Similarity=0.180  Sum_probs=90.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-------cccCCCceeEEEccCCC----HhhHHHHh------
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-------RDSWANNVIWHQGNLLS----SDSWKEAL------  119 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-------~~~~~~~~~~~~~D~~~----~~~~~~~~------  119 (202)
                      ++++||||+++||++++++|+++|++|++++|+.++..       .............|+.+    ++.+.+++      
T Consensus         2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (266)
T d1mxha_           2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELNAARAGSAVLCKGDLSLSSSLLDCCEDIIDCSFRA   81 (266)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHSTTCEEEEECCCSSSTTHHHHHHHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHHhhcCCceEEEecccccchhHHHHHHHHHHHHHHH
Confidence            58899999999999999999999999999999865421       11224566667766644    33343333      


Q ss_pred             -cCccEeEEccccCCCC---------------------ccchhhhHHHHHHHHHHHHHc---------CCCEEEEEeccc
Q 028890          120 -DGVTAVISCVGGFGSN---------------------SYMYKINGTANINAIRAASEK---------GVKRFVYISAAD  168 (202)
Q Consensus       120 -~~~d~vi~~a~~~~~~---------------------~~~~~~n~~~~~~~~~~~~~~---------~~~~~v~~SS~~  168 (202)
                       .++|++|||||.....                     ...+..|..+...........         ....++.+|+..
T Consensus        82 ~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (266)
T d1mxha_          82 FGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGAWRSRNLSVVNLCDAM  161 (266)
T ss_dssp             HSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-------CCCEEEEEECCGG
T ss_pred             hCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccccccccccchhhhhcc
Confidence             3699999999964311                     012233444444333333221         123566666644


Q ss_pred             cCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          169 FGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       169 ~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .....+....|+.||.+.+.+.+.++
T Consensus       162 ~~~~~~~~~~Y~asKaal~~lt~~lA  187 (266)
T d1mxha_         162 TDLPLPGFCVYTMAKHALGGLTRAAA  187 (266)
T ss_dssp             GGSCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCcchhhhhhhHHHHhhhHHHHH
Confidence            44455567789999999999988764

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.45  E-value=2.5e-13  Score=108.59  Aligned_cols=139  Identities=9%  Similarity=-0.007  Sum_probs=92.7

Q ss_pred             CCeEEEEc--cCChhHHHHHHHHHHCCCeEEEEecCCCCc------------cc-----ccCCCceeEEE----------
Q 028890           56 SEKLLVLG--GNGFVGSHICREALDRGLTVASLSRSGRSS------------LR-----DSWANNVIWHQ----------  106 (202)
Q Consensus        56 ~~~vlVtG--a~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------------~~-----~~~~~~~~~~~----------  106 (202)
                      .|.+||||  ++++||+++++.|.++|++|++..+.....            ..     ...........          
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFDNDMIIDKDKKMNILDMLPFDASFDTAND   81 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTTGGGEETTTEECCEEEEEECCTTCSSGGG
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhhhHHHHHHHhhhhhhhcccccceehhhcc
Confidence            57899999  557999999999999999999887653210            00     00001112222          


Q ss_pred             ----------ccCCCHhhHHHHh-------cCccEeEEccccCC------------CCccchhhhHHHHHHHHHHHHHc-
Q 028890          107 ----------GNLLSSDSWKEAL-------DGVTAVISCVGGFG------------SNSYMYKINGTANINAIRAASEK-  156 (202)
Q Consensus       107 ----------~D~~~~~~~~~~~-------~~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~~~-  156 (202)
                                +|+.+.+++++++       .++|++|||+|...            +|...+++|+.++..+.+++... 
T Consensus        82 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k~~~~~m  161 (329)
T d1uh5a_          82 IDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCKYFVNIM  161 (329)
T ss_dssp             CCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGE
T ss_pred             cchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHHHHHhhc
Confidence                      2455554444443       36899999998532            12346788888888888887653 


Q ss_pred             -CCCEEEEEecc-ccCcCCcCCcchHHHHHHHHHHHHHhc
Q 028890          157 -GVKRFVYISAA-DFGVANYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       157 -~~~~~v~~SS~-~~~~~~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                       .-+++|.+||. .....+.....|+.+|.+.+.+++.++
T Consensus       162 ~~~GsIv~iss~~~~~~~p~y~~~y~asKaal~~ltr~lA  201 (329)
T d1uh5a_         162 KPQSSIISLTYHASQKVVPGYGGGMSSAKAALESDTRVLA  201 (329)
T ss_dssp             EEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHHH
T ss_pred             ccccccccceeehhcccccccchhhhhhhccccccchhhH
Confidence             23589999883 222223335679999999999998764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=99.40  E-value=1.3e-12  Score=102.49  Aligned_cols=141  Identities=5%  Similarity=-0.086  Sum_probs=90.6

Q ss_pred             CCCCCeEEEEccCC--hhHHHHHHHHHHCCCeEEEEecCCCC------------ccccc----CCCce-eEEEcc--C--
Q 028890           53 PPPSEKLLVLGGNG--FVGSHICREALDRGLTVASLSRSGRS------------SLRDS----WANNV-IWHQGN--L--  109 (202)
Q Consensus        53 ~~~~~~vlVtGa~G--~iG~~l~~~Ll~~g~~V~~l~r~~~~------------~~~~~----~~~~~-~~~~~D--~--  109 (202)
                      +.++|+++||||+|  +||+++++.|+++|++|++.+|++..            .....    ..... ....+|  +  
T Consensus         5 ~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (297)
T d1d7oa_           5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFDQSRVLPDGSLMEIKKVYPLDAVFDN   84 (297)
T ss_dssp             CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTTGGGBCTTSSBCCEEEEEEECTTCCS
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhhccc
Confidence            45889999999886  99999999999999999998875311            00000    00111 122222  1  


Q ss_pred             ----------------CCHhhHH-------HHhcCccEeEEccccCC------------CCccchhhhHHHHHHHHHHHH
Q 028890          110 ----------------LSSDSWK-------EALDGVTAVISCVGGFG------------SNSYMYKINGTANINAIRAAS  154 (202)
Q Consensus       110 ----------------~~~~~~~-------~~~~~~d~vi~~a~~~~------------~~~~~~~~n~~~~~~~~~~~~  154 (202)
                                      .+.+.++       +.+.++|++|||||...            .+...+++|+.+...+.+++.
T Consensus        85 ~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~  164 (297)
T d1d7oa_          85 PEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVSLLSHFL  164 (297)
T ss_dssp             GGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHG
T ss_pred             cccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhhhhhHHH
Confidence                            1222222       22346899999998532            123467889999998888876


Q ss_pred             HcC--CCEEEEEec-cccCcCCcCCcchHHHHHHHHHHHHHh
Q 028890          155 EKG--VKRFVYISA-ADFGVANYLLQGYYEGKVLSSDVAACQ  193 (202)
Q Consensus       155 ~~~--~~~~v~~SS-~~~~~~~~~~~~Y~~sK~~~E~~~~~~  193 (202)
                      ...  -++.+.+++ +...........|..+|.+.+.+.+.+
T Consensus       165 ~~~~~~g~~~~~~~~~~~~~~~~~~~~y~~aKaa~~~l~~~~  206 (297)
T d1d7oa_         165 PIMNPGGASISLTYIASERIIPGYGGGMSSAKAALESDTRVL  206 (297)
T ss_dssp             GGEEEEEEEEEEECGGGTSCCTTCTTTHHHHHHHHHHHHHHH
T ss_pred             HHhhcCCcceeeeehhhcccccccccceeccccccccccccc
Confidence            532  134556665 333344455678999999999887754

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=99.37  E-value=3.7e-12  Score=97.81  Aligned_cols=127  Identities=13%  Similarity=0.083  Sum_probs=85.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh--------cCccEeEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL--------DGVTAVIS  127 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~--------~~~d~vi~  127 (202)
                      ||+|+||||+++||++++++|+++|++|++++|++.+.            ..|+.+.+......        ..+|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~~------------~~d~~~~~~~~~~~~~~~~~~~~~id~lv~   68 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV------------IADLSTAEGRKQAIADVLAKCSKGMDGLVL   68 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE------------ECCTTSHHHHHHHHHHHHTTCTTCCSEEEE
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHHH------------HHHhcCHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            68899999999999999999999999999999875432            34666665444322        24899999


Q ss_pred             ccccCCC---CccchhhhHHHHHHHHHHH----HHcCCCEEEEEeccc--cC--------------------------cC
Q 028890          128 CVGGFGS---NSYMYKINGTANINAIRAA----SEKGVKRFVYISAAD--FG--------------------------VA  172 (202)
Q Consensus       128 ~a~~~~~---~~~~~~~n~~~~~~~~~~~----~~~~~~~~v~~SS~~--~~--------------------------~~  172 (202)
                      |||....   +.....+|..+...+.+..    .+........+++..  +-                          ..
T Consensus        69 ~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~i~s~~~~~~~  148 (257)
T d1fjha_          69 CAGLGPQTKVLGNVVSVNYFGATELMDAFLPALKKGHQPAAVVISSVASAHLAFDKNPLALALEAGEEAKARAIVEHAGE  148 (257)
T ss_dssp             CCCCCTTCSSHHHHHHHHTHHHHHHHHHHHHHHHTSSSCEEEEECCGGGGSSCGGGCTTHHHHHHTCHHHHHHHHHTCCT
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCcceeeeeccccchhhhhhhhhhhccCCcEEEEeeehhccCC
Confidence            9986432   2334456666666555443    333444555555521  00                          01


Q ss_pred             CcCCcchHHHHHHHHHHHHHhc
Q 028890          173 NYLLQGYYEGKVLSSDVAACQS  194 (202)
Q Consensus       173 ~~~~~~Y~~sK~~~E~~~~~~~  194 (202)
                      .....+|+.+|.+.+.+.+.++
T Consensus       149 ~~~~~~Y~asKaal~~ltr~lA  170 (257)
T d1fjha_         149 QGGNLAYAGSKNALTVAVRKRA  170 (257)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTH
T ss_pred             CcchHHHHHHhhhhhccccccc
Confidence            1122469999999999998864

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.83  E-value=3.1e-08  Score=69.20  Aligned_cols=133  Identities=15%  Similarity=0.162  Sum_probs=86.5

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc-ccCCC-ceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR-DSWAN-NVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~-~~~~~-~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      ||.|+||+|.+|++++..|..+|.  ++..++.++.+... ..... .+.....-+ ...+..+.++++|+||..||...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~-~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYL-GPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEE-SGGGHHHHHTTCSEEEECCSCCC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEE-cCCChHHHhCCCCEEEECCCcCC
Confidence            799999999999999999998885  78888875432100 01111 111111112 34556778899999999999533


Q ss_pred             ----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhcccCCCCC
Q 028890          134 ----SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSVLGSSRC  201 (202)
Q Consensus       134 ----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~l~~~~~  201 (202)
                          .....++.|..-...+++.+.+++.+.++.+-|    +|.+.      .-..+-+..+.+.+++..++
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt----NPvD~------~t~~~~~~~kk~~~~p~~rV  142 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS----NPVNS------TIPITAEVFKKHGVYNPNKI  142 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS----SCHHH------HHHHHHHHHHHTTCCCTTSE
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec----Cchhh------hHHHHHHHHHHhcCCCcccc
Confidence                235667889999999999999998776666665    22221      11122344555666776665

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.78  E-value=1.2e-08  Score=70.23  Aligned_cols=96  Identities=14%  Similarity=0.216  Sum_probs=70.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccccCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVGGFGSN  135 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~~~~~~  135 (202)
                      |+|+|.|+ |.+|+.+++.|.++|++|++++++++.........+..++.+|..|++.+.++ ++.+|.++.+...    
T Consensus         1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~----   75 (132)
T d1lssa_           1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK----   75 (132)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC----
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc----
Confidence            68999998 99999999999999999999998865422111123678999999999999887 5678988876432    


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          136 SYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                         .+.|...+    ..++..+.+++|-.
T Consensus        76 ---d~~N~~~~----~~~k~~~~~~iI~~   97 (132)
T d1lssa_          76 ---EEVNLMSS----LLAKSYGINKTIAR   97 (132)
T ss_dssp             ---HHHHHHHH----HHHHHTTCCCEEEE
T ss_pred             ---HHHHHHHH----HHHHHcCCceEEEE
Confidence               23454433    34566677766643

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=7.9e-07  Score=61.92  Aligned_cols=131  Identities=16%  Similarity=0.128  Sum_probs=80.4

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-C--CeEEEEecCCCCc-----cccc-CCCceeEEEccCCCHhhHHHHhcCccEeEE
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-G--LTVASLSRSGRSS-----LRDS-WANNVIWHQGNLLSSDSWKEALDGVTAVIS  127 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g--~~V~~l~r~~~~~-----~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~  127 (202)
                      |||.|+|++|.+|++++-.|..+ +  .++.+++..+...     ..+. .......+    ...+.+ +.+++.|+||.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~----~~~~~~-~~~~~aDvvvi   75 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGF----SGEDAT-PALEGADVVLI   75 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEE----CSSCCH-HHHTTCSEEEE
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEE----EcCCCc-cccCCCCEEEE
Confidence            68999999999999999887543 4  5888888754221     0011 01111111    112223 35779999999


Q ss_pred             ccccCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCcCCcCCcchHHHHHHHHHHHHHhcccCCCCCC
Q 028890          128 CVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGVANYLLQGYYEGKVLSSDVAACQSVLGSSRCV  202 (202)
Q Consensus       128 ~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~l~~~~~~  202 (202)
                      +||...    ...+.+..|..-...+++.+.+.+.+.++.+=|    +|.+.. .|.     +-+++..+..++.+||+
T Consensus        76 taG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt----NPvD~m-~~~-----~~~v~~~~~~l~~~Rvi  144 (145)
T d2cmda1          76 SAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT----NPVNTT-VAI-----AAEVLKKAGVYDKNKLF  144 (145)
T ss_dssp             CCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS----SSHHHH-HHH-----HHHHHHHTTCCCGGGEE
T ss_pred             CCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc----CCchHH-HHH-----HHHHHHHcCCCChhhcc
Confidence            999643    234667888888889999998887665554443    222211 122     22355556667776653

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.45  E-value=6e-07  Score=62.64  Aligned_cols=106  Identities=13%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcc------c--ccCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSL------R--DSWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~------~--~~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      +++++||.|.|+ |.+|..++..|+.+|  .+++++++++....      .  ............|+   +    .+.++
T Consensus         2 m~~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~---~----~~~~a   73 (146)
T d1ez4a1           2 MPNHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY---S----DCKDA   73 (146)
T ss_dssp             BTTBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG---G----GGTTC
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH---H----Hhccc
Confidence            346779999996 999999999999987  58999998764310      0  11223344455553   2    35789


Q ss_pred             cEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          123 TAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |+||.++|....    .......|..-...+++.+.+.+.+.++.+-|
T Consensus        74 divvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt  121 (146)
T d1ez4a1          74 DLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA  121 (146)
T ss_dssp             SEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence            999999986432    34566788888888899999988777776655

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=2.1e-07  Score=63.79  Aligned_cols=72  Identities=17%  Similarity=0.159  Sum_probs=58.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      |+++|.|+ |.+|+++++.|.++|++|++++.+++... .........+.+|.++++.+.++ ++++|.+|-+.+
T Consensus         1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~~~~-~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~   73 (134)
T d2hmva1           1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVN-AYASYATHAVIANATEENELLSLGIRNFEYVIVAIG   73 (134)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHH-HTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCC
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHHHHH-HHHHhCCcceeeecccchhhhccCCccccEEEEEcC
Confidence            57889987 99999999999999999999998765422 22234567888999999999887 678998887765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=3.7e-06  Score=53.84  Aligned_cols=88  Identities=19%  Similarity=0.271  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..++|+|+|.|. |..|.++++.|.++|++|++.+.+..............+...+. +.+    .++++|.||...|..
T Consensus         2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~d~vi~SPGi~   75 (93)
T d2jfga1           2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSL-NDE----WLMAADLIVASPGIA   75 (93)
T ss_dssp             CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBC-CHH----HHHHCSEEEECTTSC
T ss_pred             CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeeccc-chh----hhccCCEEEECCCCC
Confidence            357889999998 99999999999999999999998765443333344555555543 222    345789999988864


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCC
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      .+.            .+++.++++++
T Consensus        76 ~~~------------~~~~~a~~~gi   89 (93)
T d2jfga1          76 LAH------------PSLSAAADAGI   89 (93)
T ss_dssp             TTS------------HHHHHHHHTTC
T ss_pred             CCC------------HHHHHHHHcCC
Confidence            321            34677777775

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.37  E-value=2e-06  Score=60.03  Aligned_cols=105  Identities=13%  Similarity=0.267  Sum_probs=72.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCc------cc---ccCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSS------LR---DSWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~------~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      ..++||.|+|+ |.+|..++..|+.+|.  ++.+++++++..      ..   ......+.+...|.       +.+.++
T Consensus         4 ~~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~-------~~l~da   75 (148)
T d1ldna1           4 NGGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDY-------DDCRDA   75 (148)
T ss_dssp             TTSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCG-------GGTTTC
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCH-------HHhccc
Confidence            45679999997 9999999999999875  899998875431      00   11123344444443       346789


Q ss_pred             cEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          123 TAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |+||.++|....    ....+..|..-...+++.+.+.+.+.++.+-|
T Consensus        76 Dvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt  123 (148)
T d1ldna1          76 DLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT  123 (148)
T ss_dssp             SEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred             eeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence            999999996432    34566778888888888888887665554433

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.35  E-value=6.1e-07  Score=63.92  Aligned_cols=74  Identities=19%  Similarity=0.193  Sum_probs=57.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .|+|+|.|| |.+|+++++.|.++||+|++++|+..+.... ...........+..+.......+...|.++.+..
T Consensus         2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~   76 (182)
T d1e5qa1           2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIP   76 (182)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSC
T ss_pred             CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeecc
Confidence            579999997 9999999999999999999999987653221 1123455555667777778888888888887664

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.33  E-value=4.8e-06  Score=57.87  Aligned_cols=98  Identities=16%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-C---eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-L---TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~---~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |++|.|.||||++|+.+++.|+++. +   +++++.++............ .....++.+.+    .+.++|++|.+++.
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~-~~~~~~~~~~~----~~~~~DivF~a~~~   75 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGT-TGTLQDAFDLE----ALKALDIIVTCQGG   75 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTC-CCBCEETTCHH----HHHTCSEEEECSCH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCC-ceeeecccchh----hhhcCcEEEEecCc
Confidence            5799999999999999999988764 2   67777655433211111111 11122233333    34689999999864


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccC
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFG  170 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~  170 (202)
                                  .....+...+.+.|.+-+|.-.|+.|.
T Consensus        76 ------------~~s~~~~~~~~~~g~~~~VID~Ss~fR  102 (146)
T d1t4ba1          76 ------------DYTNEIYPKLRESGWQGYWIDAASSLR  102 (146)
T ss_dssp             ------------HHHHHHHHHHHHTTCCCEEEECSSTTT
T ss_pred             ------------hHHHHhhHHHHhcCCCeecccCCcccc
Confidence                        123344566667776433333334444

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.30  E-value=4e-06  Score=58.24  Aligned_cols=104  Identities=14%  Similarity=0.058  Sum_probs=70.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc--------c---ccCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL--------R---DSWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~--------~---~~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      |||.|+||+|.+|..++..|+.+|.  ++..++++++...        .   .....+.+....--.|.    +.++++|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~----~~l~~aD   76 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENL----RIIDESD   76 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCG----GGGTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchH----HHhccce
Confidence            5899999999999999999999984  8999888753210        0   11122333322111122    3567999


Q ss_pred             EeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          124 AVISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       124 ~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                      +||-+||....+    ...++.|..-...+++...+.+.+.++.+
T Consensus        77 vVVitAG~~~~~g~sR~dl~~~Na~iv~~i~~~i~~~~~~~iivV  121 (145)
T d1hyea1          77 VVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEICDTKIFVI  121 (145)
T ss_dssp             EEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred             EEEEecccccCCCCChhhhhhhhHHHHHHHHHHHhccCCCeEEEE
Confidence            999999964322    34567888888888888888876666544

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.26  E-value=7.1e-06  Score=56.70  Aligned_cols=102  Identities=11%  Similarity=0.151  Sum_probs=67.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc------c--cCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR------D--SWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~------~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +||.|+|+ |.+|..++-.|+.++.  ++.+++++++....      +  ..........+|   +    +.++++|+||
T Consensus         2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~---~----~~~~~adivv   73 (142)
T d1y6ja1           2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGD---Y----SDVKDCDVIV   73 (142)
T ss_dssp             CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--C---G----GGGTTCSEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCc---H----HHhCCCceEE
Confidence            58999997 9999999999999975  89999987754211      1  111233333222   2    3467899999


Q ss_pred             EccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          127 SCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       127 ~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+||....    ....+..|..-...+++.+.+.+.+-++.+-|
T Consensus        74 itag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt  117 (142)
T d1y6ja1          74 VTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS  117 (142)
T ss_dssp             ECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred             EecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence            99996432    23456778888888889888887765555544

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=98.18  E-value=8.1e-06  Score=56.39  Aligned_cols=102  Identities=16%  Similarity=0.137  Sum_probs=70.2

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCc--------cc--ccCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSS--------LR--DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~--------~~--~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      ||.|+|++|.+|..++..|..+|.  ++..++......        ..  .....+..+...|+   +    .+.++|+|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~---~----~~~~aDiV   74 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGY---E----DTAGSDVV   74 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCG---G----GGTTCSEE
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCH---H----HhhhcCEE
Confidence            799999999999999999999985  788887542211        00  11234455444443   3    35699999


Q ss_pred             EEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |.+||....+    ...++.|..-...+++...+.+.+.++.+=|
T Consensus        75 vitaG~~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt  119 (142)
T d1o6za1          75 VITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS  119 (142)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred             EEecccccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence            9999964322    3456778888888888888887665554433

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.17  E-value=1.9e-05  Score=55.17  Aligned_cols=108  Identities=18%  Similarity=0.158  Sum_probs=73.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccc---------cCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRD---------SWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      +.+.+||.|+|+ |.+|+.++..|..++. ++++++.+++.....         ...........     ...++.++++
T Consensus         4 ~~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~a   77 (154)
T d1pzga1           4 VQRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAE-----YSYEAALTGA   77 (154)
T ss_dssp             CSCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEE-----CSHHHHHTTC
T ss_pred             ccCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEecc-----CchhhhhcCC
Confidence            346789999997 9999999988888875 888888776431110         01111112111     1235677899


Q ss_pred             cEeEEccccCCC---------CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          123 TAVISCVGGFGS---------NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |+|+.++|....         ....+..|..-...+++.+.+.+.+.++.+-|
T Consensus        78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs  130 (154)
T d1pzga1          78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT  130 (154)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred             CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            999999985431         23456678888888899998888777666655

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.02  E-value=2.8e-05  Score=53.62  Aligned_cols=103  Identities=16%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc--cCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD--SWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~--~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      .||.|+|+ |.+|.+++..|+.+|.  ++.++++++....      .+  .......+...+  +.    +.++++|+||
T Consensus         2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~--~~----~~~~daDvVV   74 (143)
T d1llda1           2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSD--DP----EICRDADMVV   74 (143)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEES--CG----GGGTTCSEEE
T ss_pred             CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCC--CH----HHhhCCcEEE
Confidence            48999997 9999999999999985  8999998764311      10  112223333222  22    2467899999


Q ss_pred             EccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       127 ~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+||....+    .+.+..|..-...+++.+.+.+.+.++.+-|
T Consensus        75 itaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt  118 (143)
T d1llda1          75 ITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT  118 (143)
T ss_dssp             ECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred             EecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence            999975432    3456778888888888888888766655544

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.02  E-value=2.7e-06  Score=60.96  Aligned_cols=36  Identities=22%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |||.|+||+|.+|++|++.|+++||+|.+.+|++++
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEK   36 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            689999999999999999999999999999998643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.02  E-value=3e-05  Score=53.39  Aligned_cols=103  Identities=12%  Similarity=0.033  Sum_probs=69.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |||.|+|+ |.+|..++..|+.+|  .++.++++++.....         .......++...+  |.    +.+.++|+|
T Consensus         1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~--~~----~~~~dadvv   73 (142)
T d1guza1           1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSN--DY----ADTANSDIV   73 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEES--CG----GGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecC--CH----HHhcCCeEE
Confidence            58999996 999999999999997  489999987654211         0112233333222  22    346799999


Q ss_pred             EEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |.++|....+    ...+..|..-...+++.+.+.+.+-++.+-|
T Consensus        74 vitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1guza1          74 IITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS  118 (142)
T ss_dssp             EECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred             EEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence            9999964322    3455667777778888888877666665544

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=97.95  E-value=0.00011  Score=50.84  Aligned_cols=93  Identities=19%  Similarity=0.292  Sum_probs=53.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC-C---eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG-L---TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g-~---~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      |||.|.||||++|+.+++.|+++. |   ++..+..+.............. ...+..+.    ..++++|++|.|.+. 
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~-~~~~~~~~----~~~~~~DvvF~alp~-   74 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAG-MLHDAFDI----ESLKQLDAVITCQGG-   74 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCC-BCEETTCH----HHHTTCSEEEECSCH-
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcce-eeecccch----hhhccccEEEEecCc-
Confidence            589999999999999999998753 3   6665544322211111111111 11122233    335789999999864 


Q ss_pred             CCCccchhhhHHHHHHHHHHHHHcCCC-EEEEEec
Q 028890          133 GSNSYMYKINGTANINAIRAASEKGVK-RFVYISA  166 (202)
Q Consensus       133 ~~~~~~~~~n~~~~~~~~~~~~~~~~~-~~v~~SS  166 (202)
                                 .-...+...+.+.|.+ .+|=.|+
T Consensus        75 -----------~~s~~~~~~l~~~g~~~~VIDlSs   98 (147)
T d1mb4a1          75 -----------SYTEKVYPALRQAGWKGYWIDAAS   98 (147)
T ss_dssp             -----------HHHHHHHHHHHHTTCCSEEEESSS
T ss_pred             -----------hHHHHHhHHHHHcCCceEEEeCCc
Confidence                       1122446666677764 3444454

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.94  E-value=2.4e-05  Score=53.81  Aligned_cols=102  Identities=18%  Similarity=0.184  Sum_probs=70.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc--------ccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR--------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~--------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      |||.|+|+ |.+|..++..|+.++.  ++..++++++....        ............|   .    +.++++|+||
T Consensus         1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~---~----~~~~~adivv   72 (140)
T d1a5za1           1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD---Y----ADLKGSDVVI   72 (140)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC---G----GGGTTCSEEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCc---H----HHhcCCCEEE
Confidence            58999997 9999999999888874  89988887543110        1112334444333   2    2467999999


Q ss_pred             EccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          127 SCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       127 ~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .+||....+    .+.+..|..-...+++...+.+.+.++++-|
T Consensus        73 itag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt  116 (140)
T d1a5za1          73 VAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT  116 (140)
T ss_dssp             ECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence            999964422    3455667777778888888888776666654

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=6.6e-06  Score=58.60  Aligned_cols=75  Identities=20%  Similarity=0.229  Sum_probs=51.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh---c--CccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL---D--GVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~---~--~~d~vi~~a  129 (202)
                      ++.+|+|+||+|.+|...++.+...|++|+++++++.+. .....-+...+ .|..+++..+++.   .  ++|++|.+.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~~Ga~~v-i~~~~~~~~~~i~~~t~~~g~d~v~d~~  105 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQNGAHEV-FNHREVNYIDKIKKYVGEKGIDIIIEML  105 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCSEE-EETTSTTHHHHHHHHHCTTCEEEEEESC
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccc-ccccccCcccc-cccccccHHHHhhhhhccCCceEEeecc
Confidence            567999999999999999999999999999999875432 11111222222 3666655433332   2  489999998


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       106 g~  107 (174)
T d1yb5a2         106 AN  107 (174)
T ss_dssp             HH
T ss_pred             cH
Confidence            74

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=1.6e-05  Score=55.39  Aligned_cols=74  Identities=19%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc---ccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS---LRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~---~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      +.+++|.|. |-+|..+++.|.++|++|++++.+++..   .......++.++.+|.+|++.++++ ++.+|.+|-+..
T Consensus         3 knHiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~   80 (153)
T d1id1a_           3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSD   80 (153)
T ss_dssp             CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccc
Confidence            347999998 9999999999999999999999876431   1222346899999999999988764 456899987764

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.88  E-value=1.8e-05  Score=54.93  Aligned_cols=40  Identities=23%  Similarity=0.416  Sum_probs=36.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      +..+++|.|+||.|.+|..+++.|.++||+|.+.+|+...
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~   45 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA   45 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence            4577899999999999999999999999999999997654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.86  E-value=1.3e-05  Score=56.96  Aligned_cols=75  Identities=21%  Similarity=0.214  Sum_probs=51.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      .++.+|+|+||+|.+|...++.+...|++|+++++++.+.... ..-+.+.+ .|..+...-.....++|+||.+.|
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~-~~lGa~~~-i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALP-LALGAEEA-ATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHH-HHTTCSEE-EEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccc-ccccccee-eehhhhhhhhhccccccccccccc
Confidence            3567999999999999999999999999999999876442111 11122222 244443322334457999999876

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.85  E-value=5e-05  Score=52.53  Aligned_cols=102  Identities=15%  Similarity=0.183  Sum_probs=69.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCc------cc---ccCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSS------LR---DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~------~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |||.|+|+ |.+|..++..|+.+|.  +++.+++++...      ..   ............|   .+    .++++|+|
T Consensus         2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d---~~----~l~~adiV   73 (146)
T d1hyha1           2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVIND---WA----ALADADVV   73 (146)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESC---GG----GGTTCSEE
T ss_pred             CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccC---HH----HhccccEE
Confidence            68999996 9999999999998874  888888765431      00   1112233333333   22    35789999


Q ss_pred             EEccccCC--------CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFG--------SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~--------~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |.+||...        .....++.|..-...+++.+++.+.+-++.+-|
T Consensus        74 VitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt  122 (146)
T d1hyha1          74 ISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS  122 (146)
T ss_dssp             EECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred             EEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence            99999532        123456678888888888888888776666554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.84  E-value=1.9e-05  Score=54.57  Aligned_cols=91  Identities=13%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCC-cccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRS-SLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      .++|.|.||||++|+.+++.|.+++|   ++..+..+... +............  ++   +  ...+.++|++|.+++.
T Consensus         2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~--~~---~--~~~~~~~d~vf~a~p~   74 (144)
T d2hjsa1           2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVG--DV---D--SFDFSSVGLAFFAAAA   74 (144)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECE--EG---G--GCCGGGCSEEEECSCH
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhc--cc---h--hhhhccceEEEecCCc
Confidence            47999999999999999999976654   67666433222 1111111111111  11   1  1224578999888753


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                                  .........+.+.+. ++|=.||
T Consensus        75 ------------~~s~~~~~~~~~~g~-~VID~Ss   96 (144)
T d2hjsa1          75 ------------EVSRAHAERARAAGC-SVIDLSG   96 (144)
T ss_dssp             ------------HHHHHHHHHHHHTTC-EEEETTC
T ss_pred             ------------chhhhhccccccCCc-eEEeech
Confidence                        112233445556563 6666665

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.84  E-value=4.8e-06  Score=58.71  Aligned_cols=74  Identities=19%  Similarity=0.245  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..++++++|.|+ |.+|+.+++.|...|. ++++..|+..+.......-+..+     .+.+++.+.+.++|+||.+.+.
T Consensus        21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~-----~~~~~~~~~l~~~Divi~atss   94 (159)
T d1gpja2          21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEA-----VRFDELVDHLARSDVVVSATAA   94 (159)
T ss_dssp             CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEE-----CCGGGHHHHHHTCSEEEECCSS
T ss_pred             CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhccc-----ccchhHHHHhccCCEEEEecCC
Confidence            357889999998 9999999999999997 68888887544221111112222     2456778888899999999875


Q ss_pred             C
Q 028890          132 F  132 (202)
Q Consensus       132 ~  132 (202)
                      .
T Consensus        95 ~   95 (159)
T d1gpja2          95 P   95 (159)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.83  E-value=0.00017  Score=50.47  Aligned_cols=104  Identities=14%  Similarity=0.096  Sum_probs=70.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc---cCCCceeEEEccCCCHhhHHHHhcCcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~---~~~~~~~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      +.+||.|+|+ |.+|..++..|..+|.  ++..++++++...      .+   ........-..|   .+    .++++|
T Consensus        19 ~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d---~~----~~~~ad   90 (160)
T d1i0za1          19 PNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKD---YS----VTANSK   90 (160)
T ss_dssp             CSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSS---GG----GGTTCS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccc---hh----hccccc
Confidence            4569999996 9999999999999986  8999988754311      01   111222222222   22    367899


Q ss_pred             EeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          124 AVISCVGGFGS----NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +||..||....    ....++.|..-...++....+.+.+-++.+=|
T Consensus        91 iVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt  137 (160)
T d1i0za1          91 IVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS  137 (160)
T ss_dssp             EEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             EEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence            99999996532    24566778888888888888887765555444

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=8e-05  Score=52.17  Aligned_cols=105  Identities=14%  Similarity=0.071  Sum_probs=70.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCcc------cc---cCCCceeEEEccCCCHhhHHHHhcCc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSL------RD---SWANNVIWHQGNLLSSDSWKEALDGV  122 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~------~~---~~~~~~~~~~~D~~~~~~~~~~~~~~  122 (202)
                      .+..||.|+|+ |.+|..++..|..+|.  ++.+++++++...      .+   ...........|   .    +.+.++
T Consensus        17 ~~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d---~----~~~~~a   88 (159)
T d2ldxa1          17 LSRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKD---Y----NVSANS   88 (159)
T ss_dssp             CCCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESS---G----GGGTTE
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccc---h----hhhccc
Confidence            34568999996 9999999999999975  8999988754311      00   111222222233   2    244789


Q ss_pred             cEeEEccccCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          123 TAVISCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |+||.+||...    .....++.|..-...+++...+.+.+-++.+=|
T Consensus        89 divvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvt  136 (159)
T d2ldxa1          89 KLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVT  136 (159)
T ss_dssp             EEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECS
T ss_pred             cEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeC
Confidence            99999999643    234567788888888888888877665554443

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=3.3e-05  Score=55.36  Aligned_cols=77  Identities=14%  Similarity=0.195  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc--c-----cCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR--D-----SWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~--~-----~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      ..++++|+|.|+ |+.|++++..|.+.|. ++++.+|+++....  .     ...........|+.+.+.+.+.+..+|+
T Consensus        15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di   93 (182)
T d1vi2a1          15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADI   93 (182)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSE
T ss_pred             CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccce
Confidence            357789999998 9999999999999987 78888988654211  0     0112344567788899989888899999


Q ss_pred             eEEccc
Q 028890          125 VISCVG  130 (202)
Q Consensus       125 vi~~a~  130 (202)
                      ||++..
T Consensus        94 iIN~Tp   99 (182)
T d1vi2a1          94 LTNGTK   99 (182)
T ss_dssp             EEECSS
T ss_pred             eccccC
Confidence            999975

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=9.9e-05  Score=48.53  Aligned_cols=68  Identities=18%  Similarity=0.322  Sum_probs=54.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi  126 (202)
                      ...||.|.|| |.+|+.++....+.|+++++++.+++.....   -.-.++.+|+.|.+.+.++.+  ++|+|-
T Consensus        10 ~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~~---va~~~i~~~~~d~~~l~~~~~~~~~DviT   79 (111)
T d1kjqa2          10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAMH---VAHRSHVINMLDGDALRRVVELEKPHYIV   79 (111)
T ss_dssp             TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGGG---GSSEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchhh---cCCeEEECCCCCHHHHHHHHHhhCCceEE
Confidence            4568999997 9999999999999999999999876543221   123678899999999988775  579883

>d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB)
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=6.8e-05  Score=55.54  Aligned_cols=64  Identities=17%  Similarity=0.102  Sum_probs=45.5

Q ss_pred             ccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh----hHHHHhcCccEeEEccccC
Q 028890           63 GGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD----SWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        63 Ga~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~----~~~~~~~~~d~vi~~a~~~  132 (202)
                      -.+|.+|.+|++++..+|++|+++.-.....    .+..+..+...  ..+    .+.+.+...|++|++|+..
T Consensus        29 ~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~----~p~~~~~~~~~--t~~~m~~~~~~~~~~~D~~i~aAAvs   96 (223)
T d1u7za_          29 HSSGKMGFAIAAAAARRGANVTLVSGPVSLP----TPPFVKRVDVM--TALEMEAAVNASVQQQNIFIGCAAVA   96 (223)
T ss_dssp             CCCSHHHHHHHHHHHHTTCEEEEEECSCCCC----CCTTEEEEECC--SHHHHHHHHHHHGGGCSEEEECCBCC
T ss_pred             CCcHHHHHHHHHHHHHcCCchhhhhcccccC----cccccccceeh--hhHHHHHHHHhhhccceeEeeeechh
Confidence            4589999999999999999999987654321    12455655443  333    3444556899999999864

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.80  E-value=0.00012  Score=52.02  Aligned_cols=107  Identities=12%  Similarity=0.055  Sum_probs=66.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCC---C----eEEEEecCCCCcc--------cccCCCceeEEEccCCCHhhHHHHh
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRG---L----TVASLSRSGRSSL--------RDSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g---~----~V~~l~r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      +..+|.||||+|.||.+++-.|+..+   .    ++..++.......        .........-+..    .....+.+
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~----~~~~~~~~   98 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSI----GIDPYEVF   98 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEE----ESCHHHHT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccc----cccchhhc
Confidence            34589999999999999999998753   2    4444554432210        0001111111111    12245778


Q ss_pred             cCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcCC-C-EEEEEe
Q 028890          120 DGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKGV-K-RFVYIS  165 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~~-~-~~v~~S  165 (202)
                      +++|+||..+|....    ..+.+..|..-...+.+++.+... . +++.+|
T Consensus        99 ~~aDvVvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~  150 (175)
T d7mdha1          99 EDVDWALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG  150 (175)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred             cCCceEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence            999999999996442    345677788888888888888643 3 444443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=6.3e-05  Score=52.49  Aligned_cols=35  Identities=26%  Similarity=0.296  Sum_probs=32.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |||+|.|+ |.+|..++..|.+.|++|.+++|++..
T Consensus         1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQP   35 (167)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCS
T ss_pred             CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHHH
Confidence            69999998 999999999999999999999998765

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.77  E-value=0.00015  Score=50.18  Aligned_cols=104  Identities=15%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      +.||.|+|+ |.+|..++..|..++. ++.+++++++....         .....+..+...|  +.    +.+++.|+|
T Consensus         3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~--~~----~~~~~advv   75 (150)
T d1t2da1           3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSN--TY----DDLAGADVV   75 (150)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEEC--CG----GGGTTCSEE
T ss_pred             CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecc--cc----cccCCCcEE
Confidence            358999996 9999999988877764 88888887643111         0112233333322  22    345789999


Q ss_pred             EEccccCCC---------CccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGS---------NSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~---------~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |.++|....         ....+..|..-...+++.+++.+.+.++++-|
T Consensus        76 vitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt  125 (150)
T d1t2da1          76 IVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT  125 (150)
T ss_dssp             EECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred             EEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence            999995432         23456778888888899998888776666654

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.77  E-value=0.00011  Score=50.52  Aligned_cols=103  Identities=17%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhcCccEeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAVI  126 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi  126 (202)
                      +||.|+|+ |.+|..++-.|..++. ++.+++.+++....         ........+...+  |.+    .+.+.|+||
T Consensus         2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~--d~~----~~~~advvv   74 (142)
T d1uxja1           2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTN--NYA----DTANSDVIV   74 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEES--CGG----GGTTCSEEE
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecC--cHH----HhcCCCEEE
Confidence            68999997 9999999999888875 88888876653111         0011222233211  222    356899999


Q ss_pred             EccccCC----CCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          127 SCVGGFG----SNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       127 ~~a~~~~----~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      -+||...    .....+..|..-...+++...+.+.+.++.+-|
T Consensus        75 itag~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt  118 (142)
T d1uxja1          75 VTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN  118 (142)
T ss_dssp             ECCSCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred             EeeeccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence            9999643    234566788888888899988887776666654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.76  E-value=5e-05  Score=48.66  Aligned_cols=75  Identities=15%  Similarity=0.174  Sum_probs=52.9

Q ss_pred             CCCCeEEEEccCChhH-HHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVG-SHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG-~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .+.+++.+.|- |++| ++|++.|.++|++|...|+............++.+..++-  ++    .+++.|.||...+..
T Consensus         6 ~~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~--~~----~i~~~d~vV~S~AI~   78 (96)
T d1p3da1           6 RRVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHA--EE----HIEGASVVVVSSAIK   78 (96)
T ss_dssp             TTCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCC--GG----GGTTCSEEEECTTSC
T ss_pred             hhCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCc--cc----cCCCCCEEEECCCcC
Confidence            46789999997 7777 6789999999999999998765433333345666665442  33    235789999888875


Q ss_pred             CCC
Q 028890          133 GSN  135 (202)
Q Consensus       133 ~~~  135 (202)
                      .++
T Consensus        79 ~~n   81 (96)
T d1p3da1          79 DDN   81 (96)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            433

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.76  E-value=1.6e-05  Score=56.59  Aligned_cols=75  Identities=15%  Similarity=0.054  Sum_probs=49.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-------cCCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-------SWANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      .|||.|.|+ |.+|..++..|.++||+|++.+|++......       ...+.............++.++++++|++|.+
T Consensus         1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~   79 (184)
T d1bg6a2           1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   79 (184)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEE
Confidence            479999998 9999999999999999999999975431110       00111111111111123456778899999988


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      ...
T Consensus        80 v~~   82 (184)
T d1bg6a2          80 VPA   82 (184)
T ss_dssp             SCG
T ss_pred             Ech
Confidence            653

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.75  E-value=2.2e-05  Score=56.26  Aligned_cols=75  Identities=21%  Similarity=0.131  Sum_probs=51.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH---hhHHHHhc--CccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALD--GVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~--~~d~vi~~a  129 (202)
                      ++.+|+|+||+|.+|...++.....|++|+++++++++... ....+...+ .|..++   +.+.+...  ++|+||.+.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~-~~~~Ga~~v-i~~~~~~~~~~~~~~~~~~Gvd~v~D~v  106 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY-LKQIGFDAA-FNYKTVNSLEEALKKASPDGYDCYFDNV  106 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH-HHHTTCSEE-EETTSCSCHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHH-HHhhhhhhh-cccccccHHHHHHHHhhcCCCceeEEec
Confidence            57899999999999999999999999999999987643211 111122222 233333   33333333  599999998


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       107 G~  108 (182)
T d1v3va2         107 GG  108 (182)
T ss_dssp             CH
T ss_pred             Cc
Confidence            74

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.5e-05  Score=49.00  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      ++.+++|+||+|++|...++.+...|++|+++.+++++
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            56799999999999999999888899999999987644

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.69  E-value=9.9e-05  Score=50.72  Aligned_cols=103  Identities=15%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      |||.|+|+ |.+|..++..|+.+|.  ++.+++++++....         ........+...+  |.    +.+.+.|+|
T Consensus         1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~--d~----~~~~~adiV   73 (142)
T d1ojua1           1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGA--DY----SLLKGSEII   73 (142)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEES--CG----GGGTTCSEE
T ss_pred             CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCC--CH----HHhccccEE
Confidence            68999997 9999999999998874  79998877543111         0112222333221  22    356789999


Q ss_pred             EEccccCCCC----ccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          126 ISCVGGFGSN----SYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       126 i~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |..||....+    ...+..|..-...+++.+.+.+.+.++++-|
T Consensus        74 vitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvt  118 (142)
T d1ojua1          74 VVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT  118 (142)
T ss_dssp             EECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred             EEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence            9999954322    3456677777778888888887766666655

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.67  E-value=2.7e-05  Score=55.63  Aligned_cols=76  Identities=22%  Similarity=0.153  Sum_probs=48.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCH-hhHHHHh--cCccEeEEccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSS-DSWKEAL--DGVTAVISCVG  130 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~-~~~~~~~--~~~d~vi~~a~  130 (202)
                      ..+.+|||+||+|++|...++.....|++|+++.+++.+........--.++  |..+. ++.....  +++|+||.+.|
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi--~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVL--AREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEE--ECC---------CCSCCEEEEEECST
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceee--ecchhHHHHHHHhhccCcCEEEEcCC
Confidence            3567999999999999999999999999999999887663221111111222  33221 1111222  25899999987


Q ss_pred             c
Q 028890          131 G  131 (202)
Q Consensus       131 ~  131 (202)
                      .
T Consensus       108 g  108 (176)
T d1xa0a2         108 G  108 (176)
T ss_dssp             T
T ss_pred             c
Confidence            5

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.66  E-value=1.9e-05  Score=56.35  Aligned_cols=75  Identities=24%  Similarity=0.241  Sum_probs=51.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHh--cCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL--DGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~--~~~d~vi~~a  129 (202)
                      ++.+|+|+||+|.+|...++.+...|++|+++++++++. ......+...+ .|..+++   .+.+..  +++|++|.+.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~-~~l~~~Ga~~v-i~~~~~~~~~~v~~~t~~~g~d~v~d~~  102 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSRLGVEYV-GDSRSVDFADEILELTDGYGVDVVLNSL  102 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHTTCCSEE-EETTCSTHHHHHHHHTTTCCEEEEEECC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccc-ccccccccccc-ccCCccCHHHHHHHHhCCCCEEEEEecc
Confidence            467999999999999999999988899999999875432 11112233322 3555544   333333  2599999999


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       103 g~  104 (183)
T d1pqwa_         103 AG  104 (183)
T ss_dssp             CT
T ss_pred             cc
Confidence            73

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.1e-05  Score=57.43  Aligned_cols=75  Identities=21%  Similarity=0.194  Sum_probs=52.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHH---HHhc--CccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWK---EALD--GVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~---~~~~--~~d~vi~~a  129 (202)
                      .+.+|+|+||+|.+|..+++.+...|++|+++++++.+..... .-+.+.+ .|..+++-.+   ++-.  ++|+++.+.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~-~lGa~~v-i~~~~~d~~~~v~~~t~g~g~d~v~d~~  105 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL-KAGAWQV-INYREEDLVERLKEITGGKKVRVVYDSV  105 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHTCSEE-EETTTSCHHHHHHHHTTTCCEEEEEECS
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH-hcCCeEE-EECCCCCHHHHHHHHhCCCCeEEEEeCc
Confidence            4679999999999999999999889999999998875421111 1122222 3666654333   3333  489999998


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      +.
T Consensus       106 g~  107 (179)
T d1qora2         106 GR  107 (179)
T ss_dssp             CG
T ss_pred             cH
Confidence            75

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.64  E-value=0.00012  Score=50.88  Aligned_cols=106  Identities=15%  Similarity=0.084  Sum_probs=64.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC----e-E--EEEecCCCCcc--------cccCCCceeEEEccCCCHhhHHHHh
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL----T-V--ASLSRSGRSSL--------RDSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~----~-V--~~l~r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      +.+||.|+||+|++|++++..|...+.    . +  ..+.-......        ..........+...    +...+.+
T Consensus         3 ~p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~   78 (154)
T d1y7ta1           3 APVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEAT----DDPKVAF   78 (154)
T ss_dssp             CCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEE----SCHHHHT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccC----Cchhhhc
Confidence            456999999999999999999988753    1 1  22221111100        01111222233222    2235678


Q ss_pred             cCccEeEEccccCCCC----ccchhhhHHHHHHHHHHHHHcCC-CEEEEE
Q 028890          120 DGVTAVISCVGGFGSN----SYMYKINGTANINAIRAASEKGV-KRFVYI  164 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~~----~~~~~~n~~~~~~~~~~~~~~~~-~~~v~~  164 (202)
                      +++|+||.++|....+    ...+..|..-...+.+.+.+... .-+|.+
T Consensus        79 ~~advViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~viv  128 (154)
T d1y7ta1          79 KDADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLV  128 (154)
T ss_dssp             TTCSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             ccccEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEE
Confidence            8999999999965432    34567788888888888887543 344443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.61  E-value=2.6e-05  Score=54.81  Aligned_cols=34  Identities=26%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |||.|.|. |.+|..+++.|.++|++|++.+|++.
T Consensus         1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~   34 (165)
T d2f1ka2           1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQS   34 (165)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCch
Confidence            68999987 99999999999999999999998754

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.59  E-value=7.6e-05  Score=47.05  Aligned_cols=83  Identities=17%  Similarity=0.061  Sum_probs=57.6

Q ss_pred             CeEEEEccCChhHH-HHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCCC
Q 028890           57 EKLLVLGGNGFVGS-HICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGSN  135 (202)
Q Consensus        57 ~~vlVtGa~G~iG~-~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~~  135 (202)
                      |||.++|- |++|- .|++.|.++|++|...|+...+....+...++++..+.  +++.    ++++|.||...+...++
T Consensus         2 ~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh--~~~~----i~~~d~vV~SsAI~~~n   74 (89)
T d1j6ua1           2 MKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPH--SADN----WYDPDLVIKTPAVRDDN   74 (89)
T ss_dssp             CEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSC--CTTS----CCCCSEEEECTTCCTTC
T ss_pred             cEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeee--cccc----cCCCCEEEEecCcCCCC
Confidence            68888887 67776 68899999999999999886554344444566665442  2332    35799999998875443


Q ss_pred             ccchhhhHHHHHHHHHHHHHcCC
Q 028890          136 SYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       136 ~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      ..            +++|++.|+
T Consensus        75 pe------------l~~A~~~gI   85 (89)
T d1j6ua1          75 PE------------IVRARMERV   85 (89)
T ss_dssp             HH------------HHHHHHTTC
T ss_pred             HH------------HHHHHHcCC
Confidence            22            556677765

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.56  E-value=0.00015  Score=50.35  Aligned_cols=99  Identities=12%  Similarity=-0.009  Sum_probs=61.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-------eEEEEecCCCCcc--------cccCCCceeEEEccCCCHhhHHHHh
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-------TVASLSRSGRSSL--------RDSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-------~V~~l~r~~~~~~--------~~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      +.+||.|+||+|.+|++++-.|+..+-       +++.++.+.....        ..........+..    .....+.+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~   77 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIA----TDKEEIAF   77 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEE----ESCHHHHT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhccccccccccccc----Cccccccc
Confidence            356999999999999999999886531       3444443322110        0011122222221    11235678


Q ss_pred             cCccEeEEccccCCC----CccchhhhHHHHHHHHHHHHHcC
Q 028890          120 DGVTAVISCVGGFGS----NSYMYKINGTANINAIRAASEKG  157 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~----~~~~~~~n~~~~~~~~~~~~~~~  157 (202)
                      +++|+||-++|....    ..+.++.|..-...+.+...+..
T Consensus        78 ~~~dvVVitag~~~~~g~sr~dll~~N~~i~k~~~~~i~k~a  119 (154)
T d5mdha1          78 KDLDVAILVGSMPRRDGMERKDLLKANVKIFKCQGAALDKYA  119 (154)
T ss_dssp             TTCSEEEECCSCCCCTTCCTTTTHHHHHHHHHHHHHHHHHHS
T ss_pred             CCceEEEEecccCCCCCCchhHHHHHhHHHHHHHHHHHHhhC
Confidence            899999999996432    34567788888888888887653

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.55  E-value=4e-05  Score=54.82  Aligned_cols=31  Identities=19%  Similarity=0.452  Sum_probs=26.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEEE
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASL   86 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l   86 (202)
                      |++|.|.||||++|+.|++.|..+. .++..+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRHPHMTITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhCCCCceEee
Confidence            6799999999999999999999985 476554

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.53  E-value=4.7e-05  Score=55.46  Aligned_cols=74  Identities=19%  Similarity=0.206  Sum_probs=47.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEc-------------cCCCHhhHHHHhcCcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQG-------------NLLSSDSWKEALDGVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~-------------D~~~~~~~~~~~~~~d  123 (202)
                      |+|.|.|. |++|..++..|++.|++|++++.+.... .........+..-             .+.-..++.++++++|
T Consensus         1 MkI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~~i-~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d   78 (202)
T d1mv8a2           1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSSTKI-DLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (202)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHH-HHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHHHH-HHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence            68999986 9999999999999999999999764321 0000011100000             0011123566677899


Q ss_pred             EeEEccccC
Q 028890          124 AVISCVGGF  132 (202)
Q Consensus       124 ~vi~~a~~~  132 (202)
                      +++.|.+..
T Consensus        79 ~i~i~VpTP   87 (202)
T d1mv8a2          79 VSFICVGTP   87 (202)
T ss_dssp             EEEECCCCC
T ss_pred             EEEEecCcc
Confidence            999999853

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.52  E-value=0.00015  Score=47.66  Aligned_cols=95  Identities=17%  Similarity=0.160  Sum_probs=65.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc-cCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..++++|+|.|+ |.+|..-++.|++.|++|++++....+.... ....+++++.-++.+.+     +.+++.|+.+.+.
T Consensus         9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~d-----l~~~~lv~~at~d   82 (113)
T d1pjqa1           9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETL-----LDSCWLAIAATDD   82 (113)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGG-----GTTCSEEEECCSC
T ss_pred             EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHH-----hCCCcEEeecCCC
Confidence            357899999998 9999999999999999999988765543322 22357888887765433     5678888766543


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      .       ..    ...+.+.|++.+  .+|++..
T Consensus        83 ~-------~~----n~~i~~~a~~~~--ilVNv~D  104 (113)
T d1pjqa1          83 D-------TV----NQRVSDAAESRR--IFCNVVD  104 (113)
T ss_dssp             H-------HH----HHHHHHHHHHTT--CEEEETT
T ss_pred             H-------HH----HHHHHHHHHHcC--CEEEeCC
Confidence            1       11    224566777765  4676654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=8e-05  Score=53.06  Aligned_cols=73  Identities=8%  Similarity=0.138  Sum_probs=42.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCC-CCcccc-cCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG-RSSLRD-SWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~-~~~~~~-~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |++|.|.||||++|..+++.|.+..+ ++..+..+. ...... ..+....-......+.+   ...+++|++|.+.+.
T Consensus         1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~---~~~~~~dvvf~a~p~   76 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPE---KVSKNCDVLFTALPA   76 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHH---HHHHHCSEEEECCST
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHh---HhccccceEEEcccc
Confidence            67999999999999999999988764 766664322 111110 00000111111122333   344579999988764

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.45  E-value=0.00017  Score=51.44  Aligned_cols=74  Identities=16%  Similarity=0.215  Sum_probs=49.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc-c----ccCCC--ceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL-R----DSWAN--NVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~-~----~~~~~--~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      |+|.|.|+ |..|.+++..|.++|++|+...|..+++. .    ....+  .......++.-.++++++++++|+||.+.
T Consensus         1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            68999998 99999999999999999999888533210 0    00000  11111112223566788899999998877


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      ..
T Consensus        80 ps   81 (180)
T d1txga2          80 ST   81 (180)
T ss_dssp             CG
T ss_pred             ch
Confidence            53

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00014  Score=51.10  Aligned_cols=75  Identities=20%  Similarity=0.132  Sum_probs=53.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..+.+|+|.|+ |.+|...++.+...|++++++++++.+... ...-+... ..|..+.+......+++|++|.+.|.
T Consensus        29 ~~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~~~~-a~~lGad~-~i~~~~~~~~~~~~~~~D~vid~~g~  103 (168)
T d1uufa2          29 GPGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKALGADE-VVNSRNADEMAAHLKSFDFILNTVAA  103 (168)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHTCSE-EEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred             CCCCEEEEecc-chHHHHHHHHhhcccccchhhccchhHHHH-HhccCCcE-EEECchhhHHHHhcCCCceeeeeeec
Confidence            35679999986 999999999998899999998887654211 11112222 24666777666666789999999875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.37  E-value=0.00063  Score=48.47  Aligned_cols=64  Identities=25%  Similarity=0.268  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ..++++.|.|. |.||+.+++.|..-|.+|++.+|.+.....              .-.+++++++..+|+|+.+....
T Consensus        40 l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~~~~~~--------------~~~~~l~ell~~sDiv~~~~pl~  103 (181)
T d1qp8a1          40 IQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTPKEGPW--------------RFTNSLEEALREARAAVCALPLN  103 (181)
T ss_dssp             CTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSCCCSSS--------------CCBSCSHHHHTTCSEEEECCCCS
T ss_pred             ccCceEEEecc-ccccccceeeeeccccccccccccccccce--------------eeeechhhhhhccchhhcccccc
Confidence            57899999997 999999999999999999999987543211              11234678899999999877543

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=97.34  E-value=3.9e-05  Score=55.10  Aligned_cols=34  Identities=21%  Similarity=0.438  Sum_probs=28.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLS   87 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~   87 (202)
                      .++.||.|.||||++|+.+++.|.++.+ ++..+.
T Consensus         3 ~~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~   37 (183)
T d2cvoa1           3 GEEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT   37 (183)
T ss_dssp             SSCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred             CCccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence            3567999999999999999999998864 766554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.00012  Score=51.41  Aligned_cols=75  Identities=20%  Similarity=0.198  Sum_probs=50.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCC-CHhhHHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      .+.+|+|.|+ |.+|...++.+...|++|+++++++.+..... .-+...+. |.. +.+..+...+++|+++.+.+..
T Consensus        27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~-~lGa~~~i-~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSSRKREDAM-KMGADHYI-ATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH-HHTCSEEE-EGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             CCCEEEEECC-CCcchhHHHHhhhccccccccccchhHHHHhh-ccCCcEEe-eccchHHHHHhhhcccceEEEEecCC
Confidence            5679999997 99999999888888999999999876532111 11222211 322 3344555666799999987753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.27  E-value=0.00018  Score=50.28  Aligned_cols=36  Identities=14%  Similarity=0.317  Sum_probs=32.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |++|.+.|- |.+|..+++.|+++||+|++.+|++.+
T Consensus         1 M~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~   36 (162)
T d3cuma2           1 MKQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSA   36 (162)
T ss_dssp             CCEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred             CCEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhh
Confidence            578999986 999999999999999999999987543

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.26  E-value=0.00014  Score=51.43  Aligned_cols=70  Identities=13%  Similarity=0.134  Sum_probs=47.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--ccCC--CceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DSWA--NNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~~~--~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      ..++++|+|.|+ |+.+++++..|.+.|.+|++++|+..+...  ....  ..+..+  +..+.     ....+|+||++
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~--~~~~~-----~~~~~dliIN~   86 (170)
T d1nyta1          15 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQAL--SMDEL-----EGHEFDLIINA   86 (170)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEEC--CSGGG-----TTCCCSEEEEC
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhccccccc--ccccc-----cccccceeecc
Confidence            347889999998 999999999999999999999998654211  1111  122222  22111     12468999999


Q ss_pred             cc
Q 028890          129 VG  130 (202)
Q Consensus       129 a~  130 (202)
                      ..
T Consensus        87 Tp   88 (170)
T d1nyta1          87 TS   88 (170)
T ss_dssp             CS
T ss_pred             cc
Confidence            74

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.25  E-value=0.0001  Score=51.59  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=31.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |+|.|.|- |.+|..+++.|+++||+|++.+|++.+
T Consensus         1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~   35 (161)
T d1vpda2           1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEA   35 (161)
T ss_dssp             CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcch
Confidence            57999986 999999999999999999999998654

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=97.25  E-value=3.6e-05  Score=54.48  Aligned_cols=38  Identities=24%  Similarity=0.291  Sum_probs=33.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .+.+|+|+||+|++|.+.++.....|++|+++++++++
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k   60 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREA   60 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSST
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHH
Confidence            35579999999999999998888889999999998765

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=97.23  E-value=0.00017  Score=48.47  Aligned_cols=70  Identities=19%  Similarity=0.225  Sum_probs=53.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHH-hcCccEeEEccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEA-LDGVTAVISCVG  130 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~-~~~~d~vi~~a~  130 (202)
                      |+++|.|. |.+|+.+++.|  +|++|++++.++... ......++.++.+|.++++.+.++ +++++.+|-+..
T Consensus         1 kHivI~G~-g~~g~~l~~~L--~~~~i~vi~~d~~~~-~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           1 RHVVICGW-SESTLECLREL--RGSEVFVLAEDENVR-KKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CCEEEESC-CHHHHHHHHTS--CGGGEEEEESCTTHH-HHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHH--cCCCCEEEEcchHHH-HHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            47889997 99999999998  467888888776542 222345789999999999988874 456888887653

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.18  E-value=0.00027  Score=49.54  Aligned_cols=91  Identities=21%  Similarity=0.309  Sum_probs=52.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHC-CCeEEE-EecCCCCcccc-------cCCCceeEEEccCCCHhhHHHHhcCccEe
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDR-GLTVAS-LSRSGRSSLRD-------SWANNVIWHQGNLLSSDSWKEALDGVTAV  125 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~-l~r~~~~~~~~-------~~~~~~~~~~~D~~~~~~~~~~~~~~d~v  125 (202)
                      ...+|.|.|++|.+|+.+++.+.+. +.++.+ ++|........       ....++. +.      ++++.+++.+|++
T Consensus         3 s~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~-~~------~~~~~~~~~~DVi   75 (162)
T d1diha1           3 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVT-VQ------SSLDAVKDDFDVF   75 (162)
T ss_dssp             CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCC-EE------SCSTTTTTSCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCce-ee------ccHHHHhcccceE
Confidence            4579999999999999999999887 566654 34543321110       0001111 11      1223455677887


Q ss_pred             EEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEe
Q 028890          126 ISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (202)
Q Consensus       126 i~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~S  165 (202)
                      |-..-+            .++...++.|.+.++ .+|.=+
T Consensus        76 IDFs~p------------~~~~~~~~~a~~~~~-~~ViGT  102 (162)
T d1diha1          76 IDFTRP------------EGTLNHLAFCRQHGK-GMVIGT  102 (162)
T ss_dssp             EECSCH------------HHHHHHHHHHHHTTC-EEEECC
T ss_pred             EEeccH------------HHHHHHHHHHHhccc-eeEEec
Confidence            766543            334455677777764 444333

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.16  E-value=4.3e-05  Score=53.15  Aligned_cols=67  Identities=18%  Similarity=0.090  Sum_probs=45.8

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |||.+.|+ |.+|+++++.|++.|+++++.+|++++........++.+       ..+.+++++++|+||.+.-+
T Consensus         1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~-------~~~~~~~~~~~dvIilavkp   67 (152)
T d2ahra2           1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY-------AMSHQDLIDQVDLVILGIKP   67 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB-------CSSHHHHHHTCSEEEECSCG
T ss_pred             CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceee-------echhhhhhhccceeeeecch
Confidence            58999987 999999999999999999999987544211100011111       12345566788988887643

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.15  E-value=0.00023  Score=49.11  Aligned_cols=66  Identities=21%  Similarity=0.196  Sum_probs=45.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      |||.|.|. |.+|+.+++.|+++|++|++.++++....... ..++.+.       ++..++++++|+||.+...
T Consensus         1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~-~~~~~~~-------~~~~e~~~~~diIi~~v~~   66 (152)
T d1i36a2           1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGRSPSTIER-ARTVGVT-------ETSEEDVYSCPVVISAVTP   66 (152)
T ss_dssp             CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHH-HHHHTCE-------ECCHHHHHTSSEEEECSCG
T ss_pred             CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCchhHHHHHh-hhccccc-------ccHHHHHhhcCeEEEEecC
Confidence            58999986 99999999999999999998887665422111 0111111       1234567789999988753

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.12  E-value=0.00011  Score=52.99  Aligned_cols=69  Identities=14%  Similarity=0.193  Sum_probs=49.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--------c-----ccCCCceeEEEccCCCHhhHHHHhc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--------R-----DSWANNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--------~-----~~~~~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      ..|+||.|.|+ |..|.+++..|.++|++|.+..|+++...        .     ...+.++.+       ..+++++++
T Consensus         5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~-------t~~l~~a~~   76 (189)
T d1n1ea2           5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITF-------TSDVEKAYN   76 (189)
T ss_dssp             CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEE-------ESCHHHHHT
T ss_pred             ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhccccccccccccccccccc-------chhhhhccC
Confidence            45678999998 99999999999999999999998753210        0     011122221       234677888


Q ss_pred             CccEeEEccc
Q 028890          121 GVTAVISCVG  130 (202)
Q Consensus       121 ~~d~vi~~a~  130 (202)
                      ++|+||.+..
T Consensus        77 ~ad~iiiavP   86 (189)
T d1n1ea2          77 GAEIILFVIP   86 (189)
T ss_dssp             TCSCEEECSC
T ss_pred             CCCEEEEcCc
Confidence            9999988764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.10  E-value=0.00053  Score=47.96  Aligned_cols=75  Identities=24%  Similarity=0.214  Sum_probs=48.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-ccCCCceeEEEccC--CCHhhHHHHh-----cCccEeE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-DSWANNVIWHQGNL--LSSDSWKEAL-----DGVTAVI  126 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-~~~~~~~~~~~~D~--~~~~~~~~~~-----~~~d~vi  126 (202)
                      .+.+|+|+| +|.+|...++.+...|++|+++++++.+... ....... .+..|-  .+.+.+.+.+     .++|++|
T Consensus        26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~-~~~~~~~~~~~~~~~~~~~~~~g~g~D~vi  103 (170)
T d1e3ja2          26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADV-TLVVDPAKEEESSIIERIRSAIGDLPNVTI  103 (170)
T ss_dssp             TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSE-EEECCTTTSCHHHHHHHHHHHSSSCCSEEE
T ss_pred             CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcE-EEeccccccccchhhhhhhcccccCCceee
Confidence            456899998 5999999999998899999999987654211 1111222 222232  2333333332     2589999


Q ss_pred             Ecccc
Q 028890          127 SCVGG  131 (202)
Q Consensus       127 ~~a~~  131 (202)
                      .+.|.
T Consensus       104 d~~g~  108 (170)
T d1e3ja2         104 DCSGN  108 (170)
T ss_dssp             ECSCC
T ss_pred             ecCCC
Confidence            99985

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.09  E-value=0.00038  Score=49.43  Aligned_cols=73  Identities=14%  Similarity=0.134  Sum_probs=47.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCce-eEEEccCCC--H-hh---HHHHhc--CccE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNV-IWHQGNLLS--S-DS---WKEALD--GVTA  124 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~-~~~~~D~~~--~-~~---~~~~~~--~~d~  124 (202)
                      .+.+|+|+|+ |.+|...++.+...|+ +|+++++++.+..... .-+. .++  |..+  . +.   +.+...  ++|+
T Consensus        28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~-~lGa~~vi--~~~~~~~~~~~~~i~~~~~~~g~Dv  103 (182)
T d1vj0a2          28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE-EIGADLTL--NRRETSVEERRKAIMDITHGRGADF  103 (182)
T ss_dssp             BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH-HTTCSEEE--ETTTSCHHHHHHHHHHHTTTSCEEE
T ss_pred             CCCEEEEECC-Cccchhheecccccccccccccccccccccccc-cccceEEE--eccccchHHHHHHHHHhhCCCCceE
Confidence            4679999997 9999999999999997 7999998765421111 1122 222  3332  2 22   222222  5899


Q ss_pred             eEEcccc
Q 028890          125 VISCVGG  131 (202)
Q Consensus       125 vi~~a~~  131 (202)
                      ||.+.|.
T Consensus       104 vid~vG~  110 (182)
T d1vj0a2         104 ILEATGD  110 (182)
T ss_dssp             EEECSSC
T ss_pred             EeecCCc
Confidence            9999875

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00071  Score=47.41  Aligned_cols=75  Identities=20%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCce-eEEEccCCCHhhHHHHhc-----CccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNV-IWHQGNLLSSDSWKEALD-----GVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~-~~~~~D~~~~~~~~~~~~-----~~d~vi~  127 (202)
                      .+.+|+|.|+ |.+|...++.+...|+ +|+++++++.+..... .-+. .++..+-.+.....+.+.     ++|++|-
T Consensus        26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~-~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid  103 (171)
T d1pl8a2          26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK-EIGADLVLQISKESPQEIARKVEGQLGCKPEVTIE  103 (171)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH-HTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEE
T ss_pred             CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHHHHHHHH-HhCCcccccccccccccccccccccCCCCceEEEe
Confidence            4568999987 9999999999999998 7999988765421111 1122 233333334444433332     5899999


Q ss_pred             cccc
Q 028890          128 CVGG  131 (202)
Q Consensus       128 ~a~~  131 (202)
                      +.|.
T Consensus       104 ~~G~  107 (171)
T d1pl8a2         104 CTGA  107 (171)
T ss_dssp             CSCC
T ss_pred             ccCC
Confidence            9985

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.0008  Score=45.14  Aligned_cols=30  Identities=20%  Similarity=0.258  Sum_probs=27.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASL   86 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l   86 (202)
                      |||.|.|++|.+|+.+.+.+.++|+++.+.
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~   30 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLK   30 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEE
Confidence            589999999999999999999999987754

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.03  E-value=0.0001  Score=52.82  Aligned_cols=76  Identities=20%  Similarity=0.197  Sum_probs=45.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEE-EecCCCCcccccCCCceeEEEccCCCHh---hHHHHh-cCccEeEEcc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVAS-LSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEAL-DGVTAVISCV  129 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~-l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~-~~~d~vi~~a  129 (202)
                      .+.+|+|+||+|++|...++.....|.++++ +++++++........+.+ ...|..+++   .+.++. +++|+||.+.
T Consensus        30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad-~vi~~~~~~~~~~~~~~~~~GvDvv~D~v  108 (187)
T d1vj1a2          30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFD-AAVNYKTGNVAEQLREACPGGVDVYFDNV  108 (187)
T ss_dssp             SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCS-EEEETTSSCHHHHHHHHCTTCEEEEEESS
T ss_pred             CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccce-EEeeccchhHHHHHHHHhccCceEEEecC
Confidence            4478999999999999999998888986554 444433321111111222 122444433   233332 2599999998


Q ss_pred             cc
Q 028890          130 GG  131 (202)
Q Consensus       130 ~~  131 (202)
                      |.
T Consensus       109 Gg  110 (187)
T d1vj1a2         109 GG  110 (187)
T ss_dssp             CH
T ss_pred             Cc
Confidence            74

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.03  E-value=0.00044  Score=47.96  Aligned_cols=25  Identities=24%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL   81 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~   81 (202)
                      -+|.|.||||++|..|++.|.++++
T Consensus         2 ~kVaIvGATGyvG~eLirlL~~H~f   26 (154)
T d2gz1a1           2 YTVAVVGATGAVGAQMIKMLEESTL   26 (154)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred             CEEEEECCCcHHHHHHHHHHHcCCC
Confidence            3799999999999999999988764

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.96  E-value=0.00033  Score=49.07  Aligned_cols=35  Identities=17%  Similarity=0.433  Sum_probs=30.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~~   91 (202)
                      |++|+|.|. |.+|..+++.|.+.|+  +|++.+|+++
T Consensus         1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~   37 (171)
T d2g5ca2           1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPE   37 (171)
T ss_dssp             CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred             CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence            568999986 9999999999999986  7888888753

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=96.93  E-value=0.00032  Score=49.65  Aligned_cols=72  Identities=14%  Similarity=0.092  Sum_probs=45.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCC-CceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWA-NNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      +.+|.+.|- |.+|..+++.|+++||+|++.+|++++....... ....... -....+++.+.+..+|.++.+.
T Consensus         2 ~~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVL-GAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCE-ECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhcccccccc-chhhhhhhhhhhcccceEEEec
Confidence            357999997 9999999999999999999999987542111000 0000000 1224455556666666666654

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.86  E-value=0.0011  Score=43.96  Aligned_cols=37  Identities=22%  Similarity=0.472  Sum_probs=32.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .+.++++|.|| |++|..++..|.+.|++|+++.+.+.
T Consensus        28 ~~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence            35679999998 99999999999999999999988753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.00027  Score=49.69  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=32.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~   92 (202)
                      ++++|+|.|+ |+.+++++..|.+.|. +|++++|+.++
T Consensus        16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~~k   53 (167)
T d1npya1          16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNVKT   53 (167)
T ss_dssp             TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCHHH
T ss_pred             CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccHHH
Confidence            5679999998 9999999999999996 89999998654

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.84  E-value=0.0013  Score=43.81  Aligned_cols=93  Identities=12%  Similarity=0.093  Sum_probs=59.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc-CccEeEEccccCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD-GVTAVISCVGGFG  133 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-~~d~vi~~a~~~~  133 (202)
                      ..+++|.|| |.+|+++++.+... +++++++.-+.+..... .-.++.++.     .+.+.+..+ .+++++.+...  
T Consensus         3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~-~I~Gi~V~~-----~~~l~~~~~~~i~iai~~i~~--   73 (126)
T d2dt5a2           3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGR-PVRGGVIEH-----VDLLPQRVPGRIEIALLTVPR--   73 (126)
T ss_dssp             CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC-EETTEEEEE-----GGGHHHHSTTTCCEEEECSCH--
T ss_pred             CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC-EECCEEEec-----HHHHHHHHhhcccEEEEeCCH--
Confidence            348999998 99999999987543 78988876544332111 113555543     344555554 35655555432  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEEecc
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYISAA  167 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~  167 (202)
                                .....+++.|.+.|++.+..++..
T Consensus        74 ----------~~~~~I~d~l~~~gIk~I~~f~~~   97 (126)
T d2dt5a2          74 ----------EAAQKAADLLVAAGIKGILNFAPV   97 (126)
T ss_dssp             ----------HHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             ----------HHHHHHHHHHHHcCCCEEeecCce
Confidence                      223467888888999988887763

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00085  Score=47.24  Aligned_cols=71  Identities=15%  Similarity=0.163  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc--cc--CCCceeEEEccCCCHhhHHHHhcCccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR--DS--WANNVIWHQGNLLSSDSWKEALDGVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~--~~--~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~  128 (202)
                      ..++++|+|.|+ |+.+++++..|.+.+.+|+++.|+.++...  ..  ...++..+..|-.       .+..+|++|++
T Consensus        15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~-------~~~~~diiIN~   86 (171)
T d1p77a1          15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI-------PLQTYDLVINA   86 (171)
T ss_dssp             CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC-------CCSCCSEEEEC
T ss_pred             CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccc-------cccccceeeec
Confidence            457889999997 999999999999988899999998654211  11  1123444443321       24579999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      ...
T Consensus        87 tp~   89 (171)
T d1p77a1          87 TSA   89 (171)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.82  E-value=0.0011  Score=43.49  Aligned_cols=36  Identities=28%  Similarity=0.558  Sum_probs=32.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .+++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        21 ~p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence            3479999998 99999999999999999999998764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=96.82  E-value=0.00033  Score=48.36  Aligned_cols=35  Identities=17%  Similarity=0.378  Sum_probs=30.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~   92 (202)
                      |+|.+.|+ |.+|.++++.|++.| ++|++.+|++++
T Consensus         1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~~   36 (152)
T d1yqga2           1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAEK   36 (152)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHHH
T ss_pred             CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChhH
Confidence            68999997 999999999999887 899999998653

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=96.81  E-value=0.0013  Score=47.28  Aligned_cols=70  Identities=19%  Similarity=0.113  Sum_probs=50.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...++++.|.|. |.||+.+++.|..-|.+|.+.++.........  .       ++...+++++++..+|+|+.+....
T Consensus        46 eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~--~-------~~~~~~~l~~ll~~sD~i~~~~plt  115 (193)
T d1mx3a1          46 RIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYLSDGVERA--L-------GLQRVSTLQDLLFHSDCVTLHCGLN  115 (193)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCTTHHHH--H-------TCEECSSHHHHHHHCSEEEECCCCC
T ss_pred             eeeCceEEEecc-ccccccceeeeeccccceeeccCcccccchhh--h-------ccccccchhhccccCCEEEEeeccc
Confidence            457899999997 99999999999988999999887654321110  0       1112345777888899888766543

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.80  E-value=0.0011  Score=43.85  Aligned_cols=36  Identities=31%  Similarity=0.642  Sum_probs=32.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ..++++|.|| |++|-.++..|.++|.+|+.+.+.+.
T Consensus        29 ~~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence            3579999998 99999999999999999999998764

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=96.78  E-value=0.0011  Score=47.91  Aligned_cols=66  Identities=15%  Similarity=0.121  Sum_probs=49.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ..++++.|.|- |.||+.+++.|..-|.+|++.++........           +....+++++++..+|+|+.+...
T Consensus        41 l~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~~~~~~~-----------~~~~~~~l~~~l~~sDii~~~~pl  106 (197)
T d1j4aa1          41 VRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFRNPELEK-----------KGYYVDSLDDLYKQADVISLHVPD  106 (197)
T ss_dssp             GGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCHHHHH-----------TTCBCSCHHHHHHHCSEEEECSCC
T ss_pred             ccCCeEEEecc-cccchhHHHhHhhhcccccccCccccccccc-----------ceeeeccccccccccccccccCCc
Confidence            46889999997 9999999999999999999988764332111           111234577888889988877654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.74  E-value=0.0055  Score=42.88  Aligned_cols=58  Identities=17%  Similarity=0.213  Sum_probs=46.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +..+++++|.|.+.-+|+-++..|+++|+.|+.+......                      +.+..++.|++|.+.|..
T Consensus        36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~----------------------l~~~~~~aDivi~a~G~~   93 (170)
T d1a4ia1          36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAH----------------------LDEEVNKGDILVVATGQP   93 (170)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSS----------------------HHHHHTTCSEEEECCCCT
T ss_pred             ccccceEEEEecCCccchHHHHHHHhccCceEEEeccccc----------------------HHHHHhhccchhhccccc
Confidence            4689999999999999999999999999999987765432                      234455677777777743

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0022  Score=44.80  Aligned_cols=58  Identities=21%  Similarity=0.275  Sum_probs=45.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...+|+++|.|.+.-+|+-++..|.++|+.|+.+......                      +.+..++.|+||.++|..
T Consensus        34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~----------------------l~~~~~~ADivI~a~G~p   91 (166)
T d1b0aa1          34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKN----------------------LRHHVENADLLIVAVGKP   91 (166)
T ss_dssp             CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSC----------------------HHHHHHHCSEEEECSCCT
T ss_pred             ccccceEEEEeccccccHHHHHHHHHhhccccccccccch----------------------hHHHHhhhhHhhhhccCc
Confidence            4578999999999999999999999999999887654321                      344456788888888743

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.73  E-value=0.0075  Score=40.18  Aligned_cols=88  Identities=20%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             CCCCeEEEEccC---ChhHHHHHHHHHHCC-CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGN---GFVGSHICREALDRG-LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~---G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      .+.++|.|.|++   +..|..+.+.|.+.| ++|+.+..+...-      .+...       ..++.++-..+|.++-+.
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~i------~G~~~-------y~sl~dlp~~vDlvvi~v   72 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEEV------QGVKA-------YKSVKDIPDEIDLAIIVV   72 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSEE------TTEEC-------BSSTTSCSSCCSEEEECS
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCcccc------CCeEe-------ecchhhcCCCCceEEEec
Confidence            466899999998   899999999998766 6899887543221      11111       122223334688887766


Q ss_pred             ccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          130 GGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       130 ~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ..            ..+..+++.|.+.|++.++++|+
T Consensus        73 p~------------~~~~~~~~~~~~~g~~~~vi~s~   97 (129)
T d2csua1          73 PK------------RFVKDTLIQCGEKGVKGVVIITA   97 (129)
T ss_dssp             CH------------HHHHHHHHHHHHHTCCEEEECCC
T ss_pred             Ch------------HHhHHHHHHHHHcCCCEEEEecc
Confidence            43            33346678888889988888887

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.00059  Score=48.43  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .+.+|+|+||+|++|...++.....|++|+++++++++
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k   68 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhH
Confidence            34589999999999999999999999999999998765

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.68  E-value=0.00043  Score=48.95  Aligned_cols=74  Identities=22%  Similarity=0.185  Sum_probs=48.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCC---HhhHHHHhc--CccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLS---SDSWKEALD--GVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~--~~d~vi~~  128 (202)
                      .+.+|+|.|+ |.+|...++.+...|+ +|+++++++.+......-.-.+++  |..+   .+.+.+...  ++|++|-+
T Consensus        27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i--~~~~~~~~~~v~~~t~g~G~D~vid~  103 (174)
T d1jqba2          27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDIL--NYKNGHIEDQVMKLTNGKGVDRVIMA  103 (174)
T ss_dssp             TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEE--CGGGSCHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEEcC-CcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccc--cccchhHHHHHHHHhhccCcceEEEc
Confidence            4668999987 9999999999988897 789888875432111111111222  3333   233444443  48999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       104 ~g~  106 (174)
T d1jqba2         104 GGG  106 (174)
T ss_dssp             SSC
T ss_pred             cCC
Confidence            985

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0016  Score=39.53  Aligned_cols=52  Identities=13%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS  111 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~  111 (202)
                      +|+|.|.|+ |-+|+.++..-.+-|+++.+++-+++....   .....++..++.+
T Consensus         1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~~pa~---~~a~dvIT~e~E~   52 (78)
T d3etja2           1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAEPAAV---PFQQSVITAEIER   52 (78)
T ss_dssp             CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSCGGGS---CGGGSEEEESSSC
T ss_pred             CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCCCccc---ccccceEEEeecc
Confidence            479999998 999999999999999999999876543221   1234566665554

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=96.68  E-value=0.002  Score=46.38  Aligned_cols=67  Identities=13%  Similarity=0.099  Sum_probs=49.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...++++.|.|. |.||+.+++.|..-|.+|++.++.......    ..+        +..++++++..+|+|+.+....
T Consensus        42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~----~~~--------~~~~l~~l~~~~D~v~~~~plt  108 (199)
T d1dxya1          42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYPMKGDH----PDF--------DYVSLEDLFKQSDVIDLHVPGI  108 (199)
T ss_dssp             CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCSSCC----TTC--------EECCHHHHHHHCSEEEECCCCC
T ss_pred             cccceeeeeeec-ccccccccccccccceeeeccCCccchhhh----cch--------hHHHHHHHHHhcccceeeeccc
Confidence            346789999997 999999999999999999999886543211    111        1234677788899888776543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.65  E-value=0.0014  Score=43.02  Aligned_cols=35  Identities=20%  Similarity=0.420  Sum_probs=32.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .++++|.|| |++|-.++..|.+.|.+|+++.|.+.
T Consensus        22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECC-chHHHHHHHHHHhccccceeeehhcc
Confidence            579999998 99999999999999999999998753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.0016  Score=43.11  Aligned_cols=35  Identities=20%  Similarity=0.380  Sum_probs=32.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .++++|.|| |+||..++..|.+.|.+|+++.|.+.
T Consensus        23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence            479999998 99999999999999999999998754

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.003  Score=45.03  Aligned_cols=68  Identities=21%  Similarity=0.177  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      ..++++.|.|- |.||+.+++.|..-|.+|+..++.......    ..   .     ..++++++++..|+|+.+.....
T Consensus        42 l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~----~~---~-----~~~~l~ell~~sDii~i~~plt~  108 (188)
T d1sc6a1          42 ARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIENKLPLG----NA---T-----QVQHLSDLLNMSDVVSLHVPENP  108 (188)
T ss_dssp             STTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCCCCCT----TC---E-----ECSCHHHHHHHCSEEEECCCSST
T ss_pred             ccceEEEEeec-ccchhhhhhhcccccceEeeccccccchhh----hh---h-----hhhhHHHHHhhccceeecccCCc
Confidence            46789999986 999999999999999999999876443211    11   1     11357788888999988776544


Q ss_pred             C
Q 028890          134 S  134 (202)
Q Consensus       134 ~  134 (202)
                      .
T Consensus       109 ~  109 (188)
T d1sc6a1         109 S  109 (188)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.63  E-value=0.00039  Score=48.77  Aligned_cols=76  Identities=21%  Similarity=0.250  Sum_probs=57.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc--cccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL--RDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~--~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +.-+|+|.|+ |-.|..-++.....|.+|++++.+.....  .......++..   ..+++.+.+.++++|+||.++-..
T Consensus        31 ~pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~---~~~~~~l~~~~~~aDivI~aalip  106 (168)
T d1pjca1          31 KPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELL---YSNSAEIETAVAEADLLIGAVLVP  106 (168)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEE---ECCHHHHHHHHHTCSEEEECCCCT
T ss_pred             CCcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceee---hhhhhhHHHhhccCcEEEEeeecC
Confidence            4569999998 99999999999999999999998765421  11112233333   456788999999999999999765


Q ss_pred             CC
Q 028890          133 GS  134 (202)
Q Consensus       133 ~~  134 (202)
                      +.
T Consensus       107 G~  108 (168)
T d1pjca1         107 GR  108 (168)
T ss_dssp             TS
T ss_pred             Cc
Confidence            43

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0017  Score=42.47  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      +++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence            468999998 99999999999999999999998753

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.60  E-value=0.0015  Score=45.61  Aligned_cols=75  Identities=23%  Similarity=0.225  Sum_probs=48.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHh-----cCccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEAL-----DGVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~-----~~~d~vi~~  128 (202)
                      .+.+|+|+|++|.+|...++.+...|. +|+++++++.+..... .-+.+. ..|..+++..++..     .++|++|.|
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~-~~Ga~~-~i~~~~~~~~~~~~~~~~~~~~d~vid~  104 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK-RAGADY-VINASMQDPLAEIRRITESKGVDAVIDL  104 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH-HHTCSE-EEETTTSCHHHHHHHHTTTSCEEEEEES
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH-HcCCce-eeccCCcCHHHHHHHHhhcccchhhhcc
Confidence            467999999999999999999988885 8888887754321111 112221 12334433333333     248999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       105 ~g~  107 (170)
T d1jvba2         105 NNS  107 (170)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            875

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.58  E-value=0.0067  Score=42.46  Aligned_cols=81  Identities=20%  Similarity=0.145  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCc-eeEEEccC--CCHhhHHHHhcCccEeEEcc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANN-VIWHQGNL--LSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~-~~~~~~D~--~~~~~~~~~~~~~d~vi~~a  129 (202)
                      +.++|+++|.|.+.-+|+-++..|+++|+.|+.+.............-. ......|+  ..++.+++....+|++|...
T Consensus        26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsav  105 (171)
T d1edza1          26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGV  105 (171)
T ss_dssp             TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEEEcc
Confidence            5689999999999999999999999999999877654322111000000 00111122  34666888888899999999


Q ss_pred             ccCC
Q 028890          130 GGFG  133 (202)
Q Consensus       130 ~~~~  133 (202)
                      |..+
T Consensus       106 G~p~  109 (171)
T d1edza1         106 PSEN  109 (171)
T ss_dssp             CCTT
T ss_pred             CCCc
Confidence            8643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.56  E-value=0.0021  Score=46.97  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=33.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      +...++|+|+|| |..|...+..|.++|++|.++.|..
T Consensus         3 ~~~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           3 MHSQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCCSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            345678999998 9999999999999999999999864

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.55  E-value=0.0022  Score=42.19  Aligned_cols=36  Identities=25%  Similarity=0.310  Sum_probs=32.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .+++++|.|| |+||-.++..|.+.|.+|+++.+.+.
T Consensus        21 ~p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~~   56 (119)
T d3lada2          21 VPGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMDK   56 (119)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeecc
Confidence            4478999998 99999999999999999999998754

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.53  E-value=0.0018  Score=42.76  Aligned_cols=34  Identities=26%  Similarity=0.620  Sum_probs=31.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      .++++|.|| |++|-.++..|.+.|++|+++.|.+
T Consensus        32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECC-cHHHHHHHHHhhcccceEEEEeccc
Confidence            468999998 9999999999999999999998865

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.52  E-value=0.0021  Score=42.63  Aligned_cols=35  Identities=11%  Similarity=0.326  Sum_probs=32.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .++++|.|| |++|..++..|.+.|.+|+++.|.+.
T Consensus        22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence            479999998 99999999999999999999999753

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.51  E-value=0.0026  Score=44.03  Aligned_cols=74  Identities=18%  Similarity=0.156  Sum_probs=46.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHh---hHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSD---SWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~d~vi~~a~~  131 (202)
                      .+.+|+|.|+ |.+|...++.+...|++|+++++++.+........--.++  |..+.+   .+.+...+.+.+|-+.+.
T Consensus        27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i--~~~~~~~~~~~~~~~~g~~~~i~~~~~  103 (166)
T d1llua2          27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTV--NARQEDPVEAIQRDIGGAHGVLVTAVS  103 (166)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEE--ETTTSCHHHHHHHHHSSEEEEEECCSC
T ss_pred             CCCEEEEeec-cccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccc--cccchhHHHHHHHhhcCCccccccccc
Confidence            5678999886 9999999998888899999999876542111111111222  444433   333344456666655543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.50  E-value=0.00081  Score=47.33  Aligned_cols=75  Identities=20%  Similarity=0.199  Sum_probs=45.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeE-EEEecCCCCcccccCCCceeEEEccCCCHhh---HHHHhc-CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTV-ASLSRSGRSSLRDSWANNVIWHQGNLLSSDS---WKEALD-GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V-~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~---~~~~~~-~~d~vi~~  128 (202)
                      ..+.+|+|.|+ |.+|...++.+...|+++ +++++++.+......-.-.+++  |..+++.   +.++.. ++|++|-|
T Consensus        27 ~~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i--~~~~~~~~~~i~~~t~gg~D~vid~  103 (174)
T d1f8fa2          27 TPASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVI--NSKTQDPVAAIKEITDGGVNFALES  103 (174)
T ss_dssp             CTTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEE--ETTTSCHHHHHHHHTTSCEEEEEEC
T ss_pred             CCCCEEEEeCC-CHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEE--eCCCcCHHHHHHHHcCCCCcEEEEc
Confidence            35678999997 999999998888888855 4555554331111101112333  4444333   333332 48999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       104 ~G~  106 (174)
T d1f8fa2         104 TGS  106 (174)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            985

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.48  E-value=0.002  Score=42.02  Aligned_cols=36  Identities=25%  Similarity=0.470  Sum_probs=32.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .+++++|.|| |++|..++..|.+.|++|+++.|.+.
T Consensus        20 ~p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          20 LPQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence            3478999998 99999999999999999999988753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.45  E-value=0.0022  Score=45.56  Aligned_cols=70  Identities=11%  Similarity=0.025  Sum_probs=49.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...++++.|.|. |.||+.+++.+..-|.+|++.++...+.....  ..+        ...++++++..+|+|+.+....
T Consensus        41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~~--~~~--------~~~~l~ell~~sDiv~~~~Plt  109 (184)
T d1ygya1          41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQ--LGI--------ELLSLDDLLARADFISVHLPKT  109 (184)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSCHHHHHH--HTC--------EECCHHHHHHHCSEEEECCCCS
T ss_pred             cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCChhHHhh--cCc--------eeccHHHHHhhCCEEEEcCCCC
Confidence            346789999996 99999999999888999999887654321111  111        1234678888899988777643


Q ss_pred             C
Q 028890          133 G  133 (202)
Q Consensus       133 ~  133 (202)
                      .
T Consensus       110 ~  110 (184)
T d1ygya1         110 P  110 (184)
T ss_dssp             T
T ss_pred             c
Confidence            3

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=96.44  E-value=0.0065  Score=42.33  Aligned_cols=65  Identities=11%  Similarity=0.214  Sum_probs=41.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +.||.|.|. |.+|+..++.|.+. +.+++++........     .......     .+++..+.+++|+|+.+.+.
T Consensus         3 kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~~~~~~~-----~~~~~~~-----~~~~~~~~~~~D~Vvi~tp~   68 (170)
T d1f06a1           3 NIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFSRRATLD-----TKTPVFD-----VADVDKHADDVDVLFLCMGS   68 (170)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEESSSCCS-----SSSCEEE-----GGGGGGTTTTCSEEEECSCT
T ss_pred             cceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEecccccc-----ccccccc-----chhhhhhccccceEEEeCCC
Confidence            458999996 99999999999886 567776653332211     1111111     12233445689999988764

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.42  E-value=0.0027  Score=41.98  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=30.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      .+++++|.|| |+||..++..|.+.|.+|+++.|+
T Consensus        19 ~P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          19 CPGKTLVVGA-SYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCeEEEECC-CccHHHHHHHHhhcCCeEEEEEec
Confidence            3468999998 999999999999999999999875

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.40  E-value=0.0026  Score=42.63  Aligned_cols=36  Identities=28%  Similarity=0.673  Sum_probs=32.7

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ..++++|.|| |++|..++..|.+.|.+|+++.+.+.
T Consensus        34 ~~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence            4579999998 99999999999999999999998754

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=96.40  E-value=0.005  Score=43.98  Aligned_cols=71  Identities=14%  Similarity=0.094  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...++++.|.|. |.||+.+++.+..-|.+|...++.........   ..     .....++++++++.+|+|+.+....
T Consensus        44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~---~~-----~~~~~~~l~~ll~~sD~v~l~~plt  114 (191)
T d1gdha1          44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHRASSSDEA---SY-----QATFHDSLDSLLSVSQFFSLNAPST  114 (191)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSCCCHHHHH---HH-----TCEECSSHHHHHHHCSEEEECCCCC
T ss_pred             eecccceEEeec-ccchHHHHHHHHhhccccccccccccccchhh---cc-----cccccCCHHHHHhhCCeEEecCCCC
Confidence            357899999997 99999999999989999999887654321110   00     0112345778888899888766543

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=96.30  E-value=0.0036  Score=44.56  Aligned_cols=71  Identities=10%  Similarity=-0.021  Sum_probs=50.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      ...++++.|.|. |.||+.+++.|..-|.+|...++.......... .       .+....+++++++++|+|+.+....
T Consensus        41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~-~-------~~~~~~~l~~~l~~sD~v~~~~plt  111 (188)
T d2naca1          41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKE-L-------NLTWHATREDMYPVCDVVTLNCPLH  111 (188)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHH-H-------TCEECSSHHHHGGGCSEEEECSCCC
T ss_pred             eccccceeeccc-cccchhhhhhhhccCceEEEEeecccccccccc-c-------cccccCCHHHHHHhccchhhccccc
Confidence            357889999997 999999999999989999999986543211100 0       1122345677888999887766543

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.30  E-value=0.011  Score=38.56  Aligned_cols=83  Identities=18%  Similarity=0.298  Sum_probs=53.1

Q ss_pred             CeEEEEccC---ChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           57 EKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        57 ~~vlVtGa~---G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      |+|.|.|++   +..|..+++.|++.||+|+.+..+...-      .+..+       ..++.++-..+|.++-+...  
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i------~G~~~-------y~sl~~lp~~~D~vvi~vp~--   66 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------EGLKC-------YRSVRELPKDVDVIVFVVPP--   66 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEEC-------BSSGGGSCTTCCEEEECSCH--
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc------cCccc-------cccchhccccceEEEEEeCH--
Confidence            689999987   6789999999999999998876432110      11111       12233333467887766543  


Q ss_pred             CCccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          134 SNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       134 ~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                                ..+..+++.|.+.|++.+++-
T Consensus        67 ----------~~~~~~l~~~~~~g~k~v~~~   87 (116)
T d1y81a1          67 ----------KVGLQVAKEAVEAGFKKLWFQ   87 (116)
T ss_dssp             ----------HHHHHHHHHHHHTTCCEEEEC
T ss_pred             ----------HHHHHHHHHHHhcCCceEEec
Confidence                      233355777778888765443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0026  Score=45.52  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=32.4

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      -++|.|.|+ |.+|+.++..++..|++|++.+++++
T Consensus         4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~   38 (192)
T d1f0ya2           4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED   38 (192)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence            479999998 99999999999999999999999864

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.27  E-value=0.0036  Score=46.06  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=33.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      +..+||+|+|| |..|..++..|.++|++|+++.|++.
T Consensus         2 ~~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           2 PTTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            45679999998 99999999999999999999998653

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.27  E-value=0.0052  Score=43.41  Aligned_cols=38  Identities=26%  Similarity=0.387  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      +..++|+|+|.|| |..|...+..|.++||+|+++.+.+
T Consensus        39 ~~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccC
Confidence            3456789999998 9999999999999999999999875

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.27  E-value=0.0044  Score=43.31  Aligned_cols=77  Identities=12%  Similarity=0.096  Sum_probs=48.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEE-ccCCC-HhhHHHHh--cCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQ-GNLLS-SDSWKEAL--DGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~-~D~~~-~~~~~~~~--~~~d~vi~~  128 (202)
                      ..+.+|+|.|+ |++|...+.++...|. +|+++++++.+............+. .|-.+ .+...+..  .++|++|-+
T Consensus        27 k~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          27 TQGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            45679999999 7899999999999985 8888888776532211112122221 12211 12222222  269999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       106 ~G~  108 (176)
T d2jhfa2         106 IGR  108 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            886

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.24  E-value=0.0028  Score=43.34  Aligned_cols=36  Identities=22%  Similarity=0.385  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      ..++++++|+|| |.+|..-++.|++.|.+|+++...
T Consensus        10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1          10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357899999999 999999999999999999998643

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0022  Score=44.57  Aligned_cols=69  Identities=16%  Similarity=0.088  Sum_probs=47.7

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      ...+|+++|.|- |.+|+.+++.|...|.+|.+...++....+... .+...        ..+++++...|++|-+.|.
T Consensus        21 ~l~Gk~v~V~Gy-G~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~-dG~~v--------~~~~~a~~~adivvtaTGn   89 (163)
T d1li4a1          21 MIAGKVAVVAGY-GDVGKGCAQALRGFGARVIITEIDPINALQAAM-EGYEV--------TTMDEACQEGNIFVTTTGC   89 (163)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTCEE--------CCHHHHTTTCSEEEECSSC
T ss_pred             eecCCEEEEecc-ccccHHHHHHHHhCCCeeEeeecccchhHHhhc-CceEe--------eehhhhhhhccEEEecCCC
Confidence            457899999995 999999999999999999999987644322111 11111        2245556666666666663

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.20  E-value=0.0023  Score=44.72  Aligned_cols=74  Identities=22%  Similarity=0.214  Sum_probs=44.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCC-CHhhHHHHh-----cCccEeEE
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLL-SSDSWKEAL-----DGVTAVIS  127 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~-~~~~~~~~~-----~~~d~vi~  127 (202)
                      .+.+|+|.|+ |++|...++.+...|+ .|+++++++.+......-.--.++  |.. +.+.+.+.+     .++|++|.
T Consensus        28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i--~~~~~~~~~~~~~~~~~~~g~D~vid  104 (176)
T d2fzwa2          28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECI--NPQDFSKPIQEVLIEMTDGGVDYSFE  104 (176)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEE--CGGGCSSCHHHHHHHHTTSCBSEEEE
T ss_pred             CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEE--eCCchhhHHHHHHHHHcCCCCcEeee
Confidence            5679999998 7899999999998996 566666655442111111111222  221 112222222     36999999


Q ss_pred             cccc
Q 028890          128 CVGG  131 (202)
Q Consensus       128 ~a~~  131 (202)
                      +.|.
T Consensus       105 ~~G~  108 (176)
T d2fzwa2         105 CIGN  108 (176)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9985

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.17  E-value=0.0035  Score=43.70  Aligned_cols=76  Identities=16%  Similarity=0.064  Sum_probs=45.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a~~  131 (202)
                      .+.+|+|.|+ |.+|...++.+...|. .|+++++++.+..........+++.-+-.+.+.+.+...  ++|++|.+.|.
T Consensus        32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence            4568999886 9999999999888886 666677765432111111222333222112233333332  58999999985

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.16  E-value=0.011  Score=39.86  Aligned_cols=85  Identities=15%  Similarity=0.118  Sum_probs=54.1

Q ss_pred             CCCeEEEEccC---ChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcccc
Q 028890           55 PSEKLLVLGGN---GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGG  131 (202)
Q Consensus        55 ~~~~vlVtGa~---G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~  131 (202)
                      +.++|.|.|++   +..|..+++.|.+.||+|+.+......-      .+..+       ..++.++-..+|.++-+..+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~i------~G~~~-------~~sl~dlp~~iD~v~i~vp~   84 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEEV------LGRKC-------YPSVLDIPDKIEVVDLFVKP   84 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEEC-------BSSGGGCSSCCSEEEECSCH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccccc------CCCcc-------cccccccCccceEEEEEeCH
Confidence            45799999998   7899999999999999999876442211      11111       12233333457877766543


Q ss_pred             CCCCccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          132 FGSNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       132 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                                  .....+++.|.+.|++.+++.
T Consensus        85 ------------~~~~~~~~e~~~~g~k~v~~~  105 (139)
T d2d59a1          85 ------------KLTMEYVEQAIKKGAKVVWFQ  105 (139)
T ss_dssp             ------------HHHHHHHHHHHHHTCSEEEEC
T ss_pred             ------------HHHHHHHHHHHHhCCCEEEEe
Confidence                        233455777777787654443

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=96.14  E-value=0.05  Score=39.83  Aligned_cols=99  Identities=15%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--cc----------------------ccCCCceeEEEccC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LR----------------------DSWANNVIWHQGNL  109 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~----------------------~~~~~~~~~~~~D~  109 (202)
                      +..+|+|.|+ |++|++++..|...|. +++++|.+.-..  ..                      ....+.+.+...+.
T Consensus        29 ~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG~~K~~~a~~~l~~~np~~~i~~~~~  107 (247)
T d1jw9b_          29 KDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  107 (247)
T ss_dssp             HHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcCchHHHHHHHHHHHhhcccchhhhhh
Confidence            5679999997 9999999999999997 788887653221  00                      01134444444332


Q ss_pred             -CCHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          110 -LSSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       110 -~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                       .+.+.....+...|++|-+...           ......+-++|.+.++ .+|+.+.
T Consensus       108 ~~~~~~~~~~~~~~divid~~d~-----------~~~~~~in~~~~~~~i-p~i~g~~  153 (247)
T d1jw9b_         108 LLDDAELAALIAEHDLVLDCTDN-----------VAVRNQLNAGCFAAKV-PLVSGAA  153 (247)
T ss_dssp             CCCHHHHHHHHHTSSEEEECCSS-----------HHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             hhhhccccccccccceeeeccch-----------hhhhhhHHHHHHHhCC-Ccccccc
Confidence             2345566667778888876532           1222244556667665 4665544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.11  E-value=0.0042  Score=43.94  Aligned_cols=76  Identities=14%  Similarity=0.100  Sum_probs=52.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEcc--------------------C--CCHh
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGN--------------------L--LSSD  113 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D--------------------~--~~~~  113 (202)
                      .-+|+|.|| |-.|.+-++.....|.+|++++.+.....+.. ...-.++..+                    +  ...+
T Consensus        29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~-~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAATKEQVE-SLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH-HTTCEECCC-----------------------CCHHH
T ss_pred             CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH-HhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            349999998 99999999999999999999998876522111 1111122111                    1  1245


Q ss_pred             hHHHHhcCccEeEEccccCC
Q 028890          114 SWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus       114 ~~~~~~~~~d~vi~~a~~~~  133 (202)
                      .+.+.+.++|+||-.+-..+
T Consensus       107 ~l~~~l~~aDlVI~talipG  126 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPG  126 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTT
T ss_pred             HHHHHHHhhhhheeeeecCC
Confidence            67777889999999987654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=96.08  E-value=0.0057  Score=39.92  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=32.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .+++++|.|| |++|..++..|.+.|.+|.++.|.+.
T Consensus        21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccch
Confidence            3579999998 99999999999999999999998754

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.08  E-value=0.0029  Score=41.80  Aligned_cols=37  Identities=22%  Similarity=0.317  Sum_probs=32.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .+++++|.|| |++|..++..|.+.|.+|+++.|.+..
T Consensus        24 ~p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            3479999998 999999999999999999999987643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.08  E-value=0.0075  Score=42.17  Aligned_cols=77  Identities=14%  Similarity=0.080  Sum_probs=48.1

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCC--HhhHHHHhc--CccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEALD--GVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~~--~~d~vi~~  128 (202)
                      ..+.+|+|.|+ |.+|...++.+...|+ +|+++++++.+........-..++...-.|  .+.+.....  ++|++|-+
T Consensus        26 ~~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          26 TPGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            45679999996 9999999999999986 788888876552211111222233211112  122322222  58999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       105 ~g~  107 (174)
T d1p0fa2         105 AGR  107 (174)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            875

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=96.07  E-value=0.048  Score=35.53  Aligned_cols=75  Identities=19%  Similarity=0.198  Sum_probs=51.6

Q ss_pred             CCCeEEEEccCC----------hhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--Cc
Q 028890           55 PSEKLLVLGGNG----------FVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GV  122 (202)
Q Consensus        55 ~~~~vlVtGa~G----------~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~  122 (202)
                      ..++|+|.|+..          +.+.+.++.|.+.|++++.++.++......  ..-..-+..+-...+.+.++++  ++
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd--~d~aD~lYfeplt~e~v~~Ii~~E~p   80 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD--YDTSDRLYFEPVTLEDVLEIVRIEKP   80 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS--TTSSSEEECCCCSHHHHHHHHHHHCC
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC--hhhcCceEEccCCHHHHHHHHHHhCC
Confidence            467999999843          678899999999999999998877653221  1222333444445666776654  68


Q ss_pred             cEeEEcccc
Q 028890          123 TAVISCVGG  131 (202)
Q Consensus       123 d~vi~~a~~  131 (202)
                      |.|+-..|.
T Consensus        81 ~~ii~~~GG   89 (121)
T d1a9xa4          81 KGVIVQYGG   89 (121)
T ss_dssp             SEEECSSST
T ss_pred             CEEEeehhh
Confidence            888766654

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.05  E-value=0.004  Score=41.31  Aligned_cols=36  Identities=22%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ..++++|.|| |+||..++..|.+.|.+|+++.+.+.
T Consensus        25 ~p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~~   60 (125)
T d1ojta2          25 VPGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMDG   60 (125)
T ss_dssp             CCSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeecc
Confidence            3579999998 99999999999999999999998753

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.98  E-value=0.004  Score=43.79  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=32.0

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~   91 (202)
                      .++||+|.|| |..|...+..|.++|+ +|+++.|.+.
T Consensus         3 ~~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            3579999998 9999999999999998 5999998754

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.93  E-value=0.0034  Score=44.60  Aligned_cols=36  Identities=19%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      +-++|.|.|+ |.+|+.++..++..|++|++.+++++
T Consensus         3 ~I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           3 DVKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CCSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3578999998 99999999999999999999999764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.89  E-value=0.0049  Score=42.49  Aligned_cols=73  Identities=22%  Similarity=0.170  Sum_probs=46.3

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCC---HhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLS---SDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~---~~~~~~~~~~~d~vi~~a~  130 (202)
                      .+.+|+|.|+ |.+|...++.+...|++|+++++++.+... ...-+...+. |..+   .+.+.+..++.|.+|-+++
T Consensus        27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~-~k~~Ga~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~  102 (168)
T d1rjwa2          27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDEKLEL-AKELGADLVV-NPLKEDAAKFMKEKVGGVHAAVVTAV  102 (168)
T ss_dssp             TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHHHHH-HHHTTCSEEE-CTTTSCHHHHHHHHHSSEEEEEESSC
T ss_pred             CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHHHhhh-hhhcCcceec-ccccchhhhhcccccCCCceEEeecC
Confidence            4668999876 999999999999999999999887654211 1112233332 2222   2334555566666666665

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.84  E-value=0.0056  Score=47.01  Aligned_cols=36  Identities=31%  Similarity=0.605  Sum_probs=32.5

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ++|+|+|.|| |.-|...+..|.++|++|.++.+++.
T Consensus         1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            4689999998 99999999999999999999987753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.82  E-value=0.0051  Score=43.05  Aligned_cols=35  Identities=23%  Similarity=0.424  Sum_probs=31.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      |+|.|+|- |.+|..+++.|+++||+|++.+|++++
T Consensus         2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~~   36 (178)
T d1pgja2           2 MDVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYSK   36 (178)
T ss_dssp             BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHHH
T ss_pred             CEEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHHH
Confidence            68999986 999999999999999999999987654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.77  E-value=0.0052  Score=45.55  Aligned_cols=31  Identities=26%  Similarity=0.405  Sum_probs=29.4

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      |+|+|| |.+|..++.+|.++|++|.++.+..
T Consensus         7 vvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGG-GIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            999998 9999999999999999999999864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.76  E-value=0.0093  Score=41.74  Aligned_cols=77  Identities=18%  Similarity=0.206  Sum_probs=47.7

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCC--HhhHHHHh--cCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLS--SDSWKEAL--DGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~--~~~~~~~~--~~~d~vi~~  128 (202)
                      ..+.+|+|.|+ |.+|...++.+...|+ .|++.++++.+...........++...-.|  .+.+....  .++|++|-|
T Consensus        27 ~~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          27 TPGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            35679999986 9999999999999998 677778776542111111222233221111  12222222  369999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       106 ~G~  108 (174)
T d1e3ia2         106 AGT  108 (174)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            985

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.75  E-value=0.0057  Score=45.20  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      +|||+|+|| |.-|...+..|.++|++|.++.+++
T Consensus         1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            479999998 9999999999999999999998764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.72  E-value=0.013  Score=40.91  Aligned_cols=77  Identities=12%  Similarity=0.109  Sum_probs=49.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEE-ccCCC-HhhHHHHh--cCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQ-GNLLS-SDSWKEAL--DGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~-~D~~~-~~~~~~~~--~~~d~vi~~  128 (202)
                      ..+.+|+|+|+ |++|...++.+...|. +|+++++++++........-..++. -|-.+ .+.+.+..  .++|++|-+
T Consensus        28 ~~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          28 KPGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            45678999987 9999999999999995 8999998876522111111112221 12111 23333333  369999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       107 ~g~  109 (176)
T d1d1ta2         107 IGH  109 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            886

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=95.67  E-value=0.0066  Score=41.73  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=30.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGL--TVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~~   90 (202)
                      +|||+|.|| |+.|-.++..|.+.++  +|+++.+++
T Consensus         2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            689999998 9999999999999875  788887765

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.61  E-value=0.0091  Score=42.07  Aligned_cols=97  Identities=5%  Similarity=0.098  Sum_probs=54.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCc-cccc--CCCce--------eEEEccCCCHhhHHHHhcCcc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSS-LRDS--WANNV--------IWHQGNLLSSDSWKEALDGVT  123 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~-~~~~--~~~~~--------~~~~~D~~~~~~~~~~~~~~d  123 (202)
                      |-||.|-| .|.||+.+++.|.+++ .+|+++....+.. ....  .....        .+-...+.-...+..+..++|
T Consensus         1 MIKVaING-fGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vD   79 (178)
T d1b7go1           1 MVNVAVNG-YGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSD   79 (178)
T ss_dssp             CEEEEEEC-CSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCS
T ss_pred             CeEEEEEC-CCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCC
Confidence            45899999 5999999999999885 5888876433221 1100  00000        000001111123455566899


Q ss_pred             EeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          124 AVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       124 ~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +||-|.|.+..            ..-++...+.| +++|+.++
T Consensus        80 iViecTG~f~~------------~e~a~~hl~~G-~KvIi~~~  109 (178)
T d1b7go1          80 IVVDTTPNGVG------------AQYKPIYLQLQ-RNAIFQGG  109 (178)
T ss_dssp             EEEECCSTTHH------------HHHHHHHHHTT-CEEEECTT
T ss_pred             EEEECCCCcCC------------HHHHHHHHHcC-CEEEEECC
Confidence            99999986421            11234444667 57776544

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.59  E-value=0.019  Score=38.42  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=24.5

Q ss_pred             eEEEEccCChhHHHHHHHHHHC-CCeEEEE
Q 028890           58 KLLVLGGNGFVGSHICREALDR-GLTVASL   86 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l   86 (202)
                      ||.|.|++|.+|+.+++.+.+. ++++.+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~   30 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAE   30 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEE
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence            6899999999999999998776 5676553

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.45  E-value=0.016  Score=46.43  Aligned_cols=73  Identities=15%  Similarity=0.238  Sum_probs=48.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--ccc----------------------cCCC--ceeEEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--LRD----------------------SWAN--NVIWHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~~~----------------------~~~~--~~~~~~~  107 (202)
                      +..||+|.|+ |++|.++++.|...|. ++.+++.+.-..  ...                      ...+  ++..+..
T Consensus        36 ~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          36 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             hcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            4568999998 8899999999999997 888888764220  000                      0123  3444555


Q ss_pred             cCCCHhhHHHHhcCccEeEEccc
Q 028890          108 NLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus       108 D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ++.+..  ...++++|+||.+..
T Consensus       115 ~i~~~~--~~~~~~~DlVi~~~D  135 (426)
T d1yovb1         115 KIQDFN--DTFYRQFHIIVCGLD  135 (426)
T ss_dssp             CGGGBC--HHHHTTCSEEEECCS
T ss_pred             cccchH--HHHHHhcchheeccC
Confidence            554332  356788899887764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.44  E-value=0.0084  Score=45.05  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      ...++|+|+|| |..|...+..|.++|++|.++.+++
T Consensus        28 ~~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          28 SNPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SSCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35679999998 9999999999999999999998764

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.43  E-value=0.012  Score=41.91  Aligned_cols=74  Identities=20%  Similarity=0.146  Sum_probs=47.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEccCCCH---hhHHHHhc--CccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQGNLLSS---DSWKEALD--GVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~---~~~~~~~~--~~d~vi~~  128 (202)
                      .+.+|+|.|+ |.+|...+..+...|. +|+++++++.+... ...-+...+ .|..+.   +.+.++..  ++|++|.+
T Consensus        25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~-a~~~Ga~~~-~~~~~~~~~~~i~~~t~g~g~D~vid~  101 (195)
T d1kola2          25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPARLAH-AKAQGFEIA-DLSLDTPLHEQIAALLGEPEVDCAVDA  101 (195)
T ss_dssp             TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHHHHHH-HHHTTCEEE-ETTSSSCHHHHHHHHHSSSCEEEEEEC
T ss_pred             CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccchhhHh-hhhccccEE-EeCCCcCHHHHHHHHhCCCCcEEEEEC
Confidence            5679999986 9999988888877876 78888877543211 111233332 233332   33444444  58999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       102 vG~  104 (195)
T d1kola2         102 VGF  104 (195)
T ss_dssp             CCT
T ss_pred             ccc
Confidence            984

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.32  E-value=0.012  Score=45.24  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSG   90 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~   90 (202)
                      +.+|+|+|+|| |.-|...+..|+++|  ++|+++.|+.
T Consensus         2 ~~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           2 PTIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CSCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CCCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            56789999998 999999999999876  5999998875

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.28  E-value=0.02  Score=41.58  Aligned_cols=37  Identities=24%  Similarity=0.437  Sum_probs=33.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ...++|+|.|| |..|...+..|.++|++|+++.++..
T Consensus        47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          47 KNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             SSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeeccc
Confidence            46789999998 99999999999999999999987653

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.24  E-value=0.019  Score=36.59  Aligned_cols=38  Identities=21%  Similarity=0.176  Sum_probs=31.6

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .++|+|+|.|+ |.-|.-++..|.+.+.+++.+.|+...
T Consensus        30 f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~~~   67 (107)
T d2gv8a2          30 FVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLGGG   67 (107)
T ss_dssp             GTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTTCC
T ss_pred             cCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecCcc
Confidence            47899999998 899999999999888887777666543

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.16  E-value=0.0098  Score=43.82  Aligned_cols=33  Identities=27%  Similarity=0.452  Sum_probs=30.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      |+|+|+|| |.-|...+..|.++|++|+++.+++
T Consensus         1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            58999998 9999999999999999999998764

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.15  Score=33.42  Aligned_cols=76  Identities=16%  Similarity=0.335  Sum_probs=53.2

Q ss_pred             CCCCeEEEEccC----------ChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--C
Q 028890           54 PPSEKLLVLGGN----------GFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--G  121 (202)
Q Consensus        54 ~~~~~vlVtGa~----------G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~  121 (202)
                      ...++|+|.|+.          -+.+.+.+++|.+.|++++.++-++.......  +-..-+..+-...+.+.++++  +
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd~--d~aD~lYfePlt~e~v~~Ii~~E~   82 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTDP--EMADATYIEPIHWEVVRKIIEKER   82 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGCG--GGSSEEECSCCCHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcCh--hhcceeeeecCCHHHHHHHHHHhC
Confidence            356899999983          36788999999999999999988776532211  122334444556777777775  6


Q ss_pred             ccEeEEcccc
Q 028890          122 VTAVISCVGG  131 (202)
Q Consensus       122 ~d~vi~~a~~  131 (202)
                      +|.|+-..|.
T Consensus        83 pd~il~~~GG   92 (127)
T d1a9xa3          83 PDAVLPTMGG   92 (127)
T ss_dssp             CSEEECSSSH
T ss_pred             cCCeEEEeee
Confidence            8988876664

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=95.07  E-value=0.032  Score=41.21  Aligned_cols=32  Identities=16%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |+|.|| |..|..++.+|.++|++|+++.+...
T Consensus         6 vvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            899998 99999999999999999999998653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.96  E-value=0.016  Score=40.08  Aligned_cols=35  Identities=11%  Similarity=0.228  Sum_probs=29.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      .+++|+|.|| |++|-.++..|.+.|++|.++.+.+
T Consensus         2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence            4678999998 9999999999999999876665443

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.02  Score=42.68  Aligned_cols=35  Identities=23%  Similarity=0.435  Sum_probs=31.2

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      +..||+|+|| |.-|...+..|.++|++|.++-.++
T Consensus         4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~~   38 (449)
T d2dw4a2           4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEARD   38 (449)
T ss_dssp             CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            5568999998 9999999999999999999987653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.85  E-value=0.013  Score=40.56  Aligned_cols=68  Identities=16%  Similarity=0.153  Sum_probs=47.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      +..+|+++|.|= |++|+-+++.|...|.+|+++..+|-...+.. -+++++.        .++++++..|++|-+-|
T Consensus        20 ~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~-mdGf~v~--------~~~~a~~~aDi~vTaTG   87 (163)
T d1v8ba1          20 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFNVV--------TLDEIVDKGDFFITCTG   87 (163)
T ss_dssp             CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCEEC--------CHHHHTTTCSEEEECCS
T ss_pred             eecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecCchhhHHHH-hcCCccC--------chhHccccCcEEEEcCC
Confidence            457899999996 99999999999999999999988875432221 1233322        23455566666666655

>d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Zymomonas mobilis [TaxId: 542]

Probab=94.82  E-value=0.015  Score=39.67  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=29.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDR--GLTVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~   90 (202)
                      +|+|.|.|+||.||...++-+.+.  .++|++++-..
T Consensus         2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa~~   38 (150)
T d1r0ka2           2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANR   38 (150)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEESS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEeCC
Confidence            589999999999999999999886  47888887543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.78  E-value=0.027  Score=40.35  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=32.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      ..++++|+|-|- |.+|+++++.|.+.|++|++.+.+.
T Consensus        24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d~   60 (201)
T d1c1da1          24 SLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTDT   60 (201)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecchH
Confidence            468899999985 9999999999999999999887654

>d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.018  Score=39.38  Aligned_cols=35  Identities=20%  Similarity=0.314  Sum_probs=29.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~   90 (202)
                      ||+|.|.|+||.||...++-+.+..  ++|++++-..
T Consensus         1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa~~   37 (151)
T d1q0qa2           1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGK   37 (151)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEESS
T ss_pred             CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence            6789999999999999999998873  6888887543

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.71  E-value=0.018  Score=40.13  Aligned_cols=37  Identities=11%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .++++|+|.|+ |+.+++++..|.+.| +|+++.|+.++
T Consensus        16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~k   52 (177)
T d1nvta1          16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVEK   52 (177)
T ss_dssp             CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHHH
T ss_pred             cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhhH
Confidence            57889999997 999999999997666 99999998654

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.64  E-value=0.084  Score=36.61  Aligned_cols=97  Identities=10%  Similarity=0.139  Sum_probs=56.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCC-cccccCCCceeEEEccC-----------CCHhhHHHHhcCc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRS-SLRDSWANNVIWHQGNL-----------LSSDSWKEALDGV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~-~~~~~~~~~~~~~~~D~-----------~~~~~~~~~~~~~  122 (202)
                      .+||.|-|- |.||+.+++.|++++ .+++++.-..+. ........+......+-           .....+..+.+++
T Consensus         2 ~irIaINGf-GRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           2 KVKVGVNGY-GTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             cEEEEEECC-CHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccC
Confidence            468999996 999999999998875 577777632222 11111111122222111           1122455566789


Q ss_pred             cEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          123 TAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       123 d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      |+|+=|.|.+..            ..-++.-.++|+ +.|++|+
T Consensus        81 DvViEcTG~f~~------------~~~~~~hl~~G~-k~Vi~s~  111 (172)
T d2czca2          81 DIIVDATPGGIG------------AKNKPLYEKAGV-KAIFQGG  111 (172)
T ss_dssp             SEEEECCSTTHH------------HHHHHHHHHHTC-EEEECTT
T ss_pred             CEEEECCCCCCC------------HHHHHHHHHcCC-CEEEECC
Confidence            999999997421            111333446676 6666665

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.55  E-value=0.069  Score=40.32  Aligned_cols=36  Identities=25%  Similarity=0.191  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      ..++++|+|-|- |.+|.++++.|.+.|++|++++-.
T Consensus        33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD~   68 (293)
T d1hwxa1          33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGES   68 (293)
T ss_dssp             SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcc
Confidence            467889999997 999999999999999999887643

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=94.45  E-value=0.0094  Score=43.74  Aligned_cols=37  Identities=16%  Similarity=0.209  Sum_probs=32.8

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      ..++++|+|-|- |.+|+++++.|.+.|++|++.+.+.
T Consensus        36 ~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~~   72 (230)
T d1leha1          36 SLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVNK   72 (230)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeecccH
Confidence            468899999997 9999999999999999999877653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.39  E-value=0.019  Score=43.47  Aligned_cols=35  Identities=14%  Similarity=0.286  Sum_probs=31.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |..|+|.|| |.-|..+++.|.+.|++|.++.+++.
T Consensus         1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            457999998 99999999999999999999987653

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.35  E-value=0.023  Score=42.57  Aligned_cols=32  Identities=25%  Similarity=0.692  Sum_probs=29.2

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC-eEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL-TVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~   90 (202)
                      +|+|+|| |-+|.+++.+|.++|. +|.++.|+.
T Consensus         3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            7999998 9999999999999996 799999874

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.24  E-value=0.02  Score=42.66  Aligned_cols=32  Identities=19%  Similarity=0.307  Sum_probs=30.1

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      +|+|.|| |-.|..++..|.+.|++|.++.|++
T Consensus         4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            6999998 9999999999999999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.24  E-value=0.078  Score=36.40  Aligned_cols=77  Identities=16%  Similarity=0.188  Sum_probs=46.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCcccccCCCceeEEEc-cCCC-HhhHHHHh--cCccEeEEc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSSLRDSWANNVIWHQG-NLLS-SDSWKEAL--DGVTAVISC  128 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~~~~~~~~~~~~~~~-D~~~-~~~~~~~~--~~~d~vi~~  128 (202)
                      ..+.+|+|.|+ |.+|...+.++...|. +|+++++++.+........--+++.. +-.+ .+.+.+..  .++|++|-+
T Consensus        27 k~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~  105 (175)
T d1cdoa2          27 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC  105 (175)
T ss_dssp             CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred             CCCCEEEEEec-CCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence            35678999997 7788888888888865 78888887654221111122233321 1111 12333333  269999999


Q ss_pred             ccc
Q 028890          129 VGG  131 (202)
Q Consensus       129 a~~  131 (202)
                      .|.
T Consensus       106 ~G~  108 (175)
T d1cdoa2         106 VGN  108 (175)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            985

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.23  E-value=0.026  Score=40.06  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      -|+|+|| |.-|...+..|.++|++|.++.+++
T Consensus         7 DviViGa-G~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGT-GITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            3899997 9999999999999999999999875

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.21  E-value=0.027  Score=39.79  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=27.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |+|.|.| .|++|..++..| ++|++|++++-++.
T Consensus         1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~   33 (196)
T d1dlja2           1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPS   33 (196)
T ss_dssp             CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHH
T ss_pred             CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHH
Confidence            6899998 599999998655 67999999997753

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=94.18  E-value=0.34  Score=34.07  Aligned_cols=93  Identities=20%  Similarity=0.255  Sum_probs=55.9

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCcccccCCCceeEEEc-cC------------------CCHhh
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQG-NL------------------LSSDS  114 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~~~-D~------------------~~~~~  114 (202)
                      +||.|.|- |+-|..++..|.+.|.   +.++++.+...  ....+...++..+ ++                  .+.+.
T Consensus         1 ~kI~viGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~--L~~~~a~~ki~iG~~~t~G~G~g~~p~~g~~aa~e~~~~   77 (194)
T d1w5fa1           1 LKIKVIGV-GGAGNNAINRMIEIGIHGVEFVAVNTDLQV--LEASNADVKIQIGENITRGLGAGGRPEIGEQAALESEEK   77 (194)
T ss_dssp             CCEEEEEE-HHHHHHHHHHHHHHCCTTEEEEEEESCHHH--HHTCCCSEEEECCTTTTTTSCCTTCHHHHHHHHHHTHHH
T ss_pred             CeEEEEEe-CchHHHHHHHHHHcCCCceEEEEEcCCHHH--HhcCCcceEEecccccCCCcccccCchhhHhHHHHHHHH
Confidence            47889997 9999999999998764   44555543211  1111112222221 11                  23567


Q ss_pred             HHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCC
Q 028890          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      +.+.+++.|.||-+||..+.      +..-++-.+.+.+++.+.
T Consensus        78 I~~~l~~~d~vfi~AGlGGg------TGtgaapviA~~ake~g~  115 (194)
T d1w5fa1          78 IREVLQDTHMVFITAGFGGG------TGTGASPVIAKIAKEMGI  115 (194)
T ss_dssp             HHHHTTTCSEEEEEEETTSS------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhcCCCeEEEEEecCCC------cccchHHHHHHHHHHcCC
Confidence            88889999999999996542      112233345666777664

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=94.12  E-value=0.034  Score=42.15  Aligned_cols=37  Identities=30%  Similarity=0.522  Sum_probs=32.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      |++...|+|+|| |..|..++..|.++|.+|.++.+.+
T Consensus         4 p~~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           4 PPEEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             CCSEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            345567999998 9999999999999999999998764

>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.07  E-value=0.16  Score=36.26  Aligned_cols=95  Identities=17%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCcccccCCCceeEEEcc-C------------------CCH
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQGN-L------------------LSS  112 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~~~D-~------------------~~~  112 (202)
                      ...++.|.|- |+-|..++..|.+.|.   +.++++.+... +. ......++..+. +                  .+.
T Consensus        14 ~~~ki~ViGv-GGaG~n~v~~l~~~~~~~v~~iainTD~~~-L~-~~~~~~ki~ig~~~t~g~Gag~~p~~g~~aa~e~~   90 (209)
T d2vapa1          14 TKAKITVVGC-GGAGNNTITRLKMEGIEGAKTVAINTDAQQ-LI-RTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESA   90 (209)
T ss_dssp             TCCCEEEEEE-HHHHHHHHHHHHHHTCTTEEEEEEESBHHH-HH-TSCCSEEEECCTTTTTTBCCTTCHHHHHHHHHHTH
T ss_pred             cCCcEEEEEe-CChHHHHHHHHHHcCCCceEEEEEeCCHHH-Hh-cCCcchhcccccccccccccccchHHHHHHHHHHH
Confidence            3468999998 9999999999998874   44555543211 11 111112222211 1                  234


Q ss_pred             hhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCC
Q 028890          113 DSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       113 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      +.+.+.+++.|.||-+||..+.      +..-++.-+.+.+++.+.
T Consensus        91 ~~I~~~l~~~d~vfi~AGlGGG------TGsgaapvia~~ake~g~  130 (209)
T d2vapa1          91 EEIKAAIQDSDMVFITCGLGGG------TGTGSAPVVAEISKKIGA  130 (209)
T ss_dssp             HHHHHHHTTCSEEEEEEETTSS------HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccCCCEEEEEEeCCCC------ccccHHHHHHHHHHHcCC
Confidence            5788889999999999996542      111222244566666654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.05  E-value=0.029  Score=40.04  Aligned_cols=33  Identities=18%  Similarity=0.465  Sum_probs=29.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG   90 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~   90 (202)
                      ++|+|+|| |.-|...+..|.++|+ +|+++.+++
T Consensus         1 P~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGA-GMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CCEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CCEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            47999998 9999999999999996 799998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.05  E-value=0.051  Score=36.70  Aligned_cols=36  Identities=14%  Similarity=0.266  Sum_probs=29.3

Q ss_pred             CCeEEEE-ccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVL-GGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVt-Ga~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ++.++|. .+.|++|..+++.|.+.|++|+++.+.+.
T Consensus        39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            4455555 34599999999999999999999998753

>d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Polymyxin resistance protein ArnA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.12  Score=36.70  Aligned_cols=73  Identities=10%  Similarity=-0.021  Sum_probs=45.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccccc---------CCCceeEEE-ccCCCHhhHHHHhc-CccEe
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDS---------WANNVIWHQ-GNLLSSDSWKEALD-GVTAV  125 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~---------~~~~~~~~~-~D~~~~~~~~~~~~-~~d~v  125 (202)
                      ||+++.|. +..|..+++.|+++|++|.++...+++.....         ...++.++. -|+.+++.++.+-+ ++|++
T Consensus         1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~i~~~~~Dli   79 (203)
T d2blna2           1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGEKAFYGSVARLAAERGIPVYAPDNVNHPLWVERIAQLSPDVI   79 (203)
T ss_dssp             CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC------CCCCHHHHHHHHTCCEECCSCCCSHHHHHHHHHTCCSEE
T ss_pred             CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCcccccCHHHHHHHHcCCcceecccccchhhhhhhhhhcccce
Confidence            57888865 77899999999999999977654332211100         112455554 35556654443322 68988


Q ss_pred             EEccc
Q 028890          126 ISCVG  130 (202)
Q Consensus       126 i~~a~  130 (202)
                      |...+
T Consensus        80 i~~g~   84 (203)
T d2blna2          80 FSFYY   84 (203)
T ss_dssp             EEESC
T ss_pred             eeeec
Confidence            87775

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.99  E-value=0.038  Score=38.83  Aligned_cols=38  Identities=18%  Similarity=0.253  Sum_probs=31.5

Q ss_pred             CCCeEEE-EccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLV-LGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlV-tGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .+.+++| +||+|.+|.+.++.....|++|++++|+.+.
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~   66 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPN   66 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTT
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccc
Confidence            3456666 6899999999999988889999999987654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=93.91  E-value=0.12  Score=35.70  Aligned_cols=105  Identities=12%  Similarity=0.054  Sum_probs=62.3

Q ss_pred             CCeEEEEccCChhHHH--HHHHHHHC----CCeEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHhc
Q 028890           56 SEKLLVLGGNGFVGSH--ICREALDR----GLTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEALD  120 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~--l~~~Ll~~----g~~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~~  120 (202)
                      ++||.|.|| |.+|..  ++..|+..    +.+++.++.++++...         .......++...     .+.++++.
T Consensus         2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~-----td~~eaL~   75 (171)
T d1obba1           2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKT-----MNLDDVII   75 (171)
T ss_dssp             CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEE-----SCHHHHHT
T ss_pred             CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEe-----CChhhccc
Confidence            469999997 888864  34445443    3589999987643110         111223333322     23567889


Q ss_pred             CccEeEEccccCCCC----------------------cc--------chhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          121 GVTAVISCVGGFGSN----------------------SY--------MYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       121 ~~d~vi~~a~~~~~~----------------------~~--------~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ++|+||.+++..+..                      ..        ....|+.-...+++.+++...+.+++.-|
T Consensus        76 dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~T  151 (171)
T d1obba1          76 DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAA  151 (171)
T ss_dssp             TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEEC
Confidence            999999998742200                      00        01236666677788888877665555544

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.85  E-value=0.041  Score=35.49  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=28.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHH---CCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~---~g~~V~~l~r~~~   91 (202)
                      +++++|.|| |++|-.++..|.+   +|.+|+++.|.+.
T Consensus        20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            479999998 9999999966554   4668999988653

>d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: CoaB-like
family: CoaB-like
domain: Phosphopantothenoylcysteine synthetase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.85  E-value=0.18  Score=37.87  Aligned_cols=35  Identities=23%  Similarity=0.172  Sum_probs=30.2

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      +-|++=--.||..|.+|++.++.+|++|+++.+..
T Consensus        36 pVR~ItN~SSGk~G~alA~~~~~~Ga~V~li~g~~   70 (290)
T d1p9oa_          36 PVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRAR   70 (290)
T ss_dssp             CSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred             CceEeCCCCchHHHHHHHHHHHHcCCEEEEEecCC
Confidence            34777778899999999999999999999997653

>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Crotonobetainyl-CoA:carnitine CoA-transferase, CaiB
species: Escherichia coli [TaxId: 562]

Probab=93.81  E-value=0.36  Score=37.53  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=70.9

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCccc-------ccCCCceeEEEccCCCHh---hHHHHhcCc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLR-------DSWANNVIWHQGNLLSSD---SWKEALDGV  122 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~-------~~~~~~~~~~~~D~~~~~---~~~~~~~~~  122 (202)
                      +..+.||+=.+ ...-|-+..+.|...|++|+=+-+.......       ...+.+-+.+..|+.+++   -+.++++.+
T Consensus         8 PL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~r~~~~~~~~~n~~K~si~ldl~~~~G~~~~~~Lv~~a   86 (402)
T d1xk7a1           8 PLAGLRVVFSG-IEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETT   86 (402)
T ss_dssp             TTTTCEEEEEC-CSSHHHHHHHHHHHTTCEEEEEECSSSCCGGGGSSSHHHHHTTTCEEEEECTTSHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEEeC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCccccCCchhHHhCCCCeEEEEeCcCHHHHHHHHHHHhhc
Confidence            45777887666 3666888888888999999988754311111       112346678999998865   466788899


Q ss_pred             cEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 028890          123 TAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (202)
Q Consensus       123 d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~  171 (202)
                      |+||+|--+..-  ..+...       .+.+++.+ .++||+|-+.||.
T Consensus        87 Dv~i~n~rpg~~--~~lGl~-------~~~L~~~n-P~lI~~sisgfG~  125 (402)
T d1xk7a1          87 DIFIEASKGPAF--ARRGIT-------DEVLWQHN-PKLVIAHLSGFGQ  125 (402)
T ss_dssp             SEEEEECSSSHH--HHTTCC-------HHHHHHHC-TTCEEEEEESSCS
T ss_pred             CCceeeeccccc--cccccc-------ccchhhcc-ccccceeeecccC
Confidence            999999764210  000111       23344555 4899999887874

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.52  E-value=0.056  Score=34.72  Aligned_cols=35  Identities=23%  Similarity=0.348  Sum_probs=28.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHH---CCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALD---RGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~---~g~~V~~l~r~~~   91 (202)
                      +++++|.|| |++|-.++..|.+   .|.+|+++.|.+.
T Consensus        18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             CCeEEEECC-ChHHHHHHHHhHhhcccccccceeccccc
Confidence            479999998 9999999976554   4889999998753

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.50  E-value=0.045  Score=37.11  Aligned_cols=31  Identities=16%  Similarity=0.374  Sum_probs=26.9

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      ||+|.|| |++|-.++..|. ++.+|+++.+.+
T Consensus         2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~   32 (167)
T d1xhca1           2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP   32 (167)
T ss_dssp             EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred             eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence            7999998 999999999885 578999998754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.40  E-value=0.044  Score=38.43  Aligned_cols=33  Identities=21%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG--LTVASLSRSG   90 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~   90 (202)
                      |||+|.|| |++|-.++..|.+.+  .+|+++.|.+
T Consensus         1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            68999998 999999999998864  5788887754

>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: 2-methylacyl-CoA racemase Mcr
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.36  E-value=0.36  Score=36.89  Aligned_cols=108  Identities=17%  Similarity=0.155  Sum_probs=67.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc--ccccCCCceeEEEccCCCHh---hHHHHhcCccEeEE
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSD---SWKEALDGVTAVIS  127 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~d~vi~  127 (202)
                      +.++-+|+=.+- ..-|-+..+.|...|++|+=+-+.....  .....+.+=+.+..|+.+++   -+.++++++|+||+
T Consensus         3 PL~girVld~~~-~~agp~~~~~lad~GA~VikvE~p~~~~~~~~~~~nr~K~si~lDl~~~~g~~~~~~Lv~~aDv~i~   81 (359)
T d1x74a1           3 PLSGLRVVELAG-IGPGPHAAMILGDLGADVVRIDRPSSVDGISRDAMLRNRRIVTADLKSDQGLELALKLIAKADVLIE   81 (359)
T ss_dssp             TTTTCEEEEECC-STHHHHHHHHHHHTTCEEEEEECC-----CCCCGGGCSCEEEECCTTSHHHHHHHHHHHTTCSEEEE
T ss_pred             CCCCCEEEEcCC-chHHHHHHHHHHHhCCEEEEECCCCCCCchhhhhhhCCCeEEEEeCcCHHHHHHHHHHHhhCCEEEe
Confidence            345666665553 5667788888888899999886542211  11122345578899998865   46678889999999


Q ss_pred             ccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 028890          128 CVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (202)
Q Consensus       128 ~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~  171 (202)
                      |-.+..-  .-+...       .+.+++.+ .++||+|-+.||.
T Consensus        82 n~~pg~~--~~lgl~-------~~~l~~~n-P~lI~~sisgfG~  115 (359)
T d1x74a1          82 GYRPGVT--ERLGLG-------PEECAKVN-DRLIYARMTGWGQ  115 (359)
T ss_dssp             CSCTTHH--HHHTCS-------HHHHHHHC-TTCEEEEEESSCS
T ss_pred             cCCCCch--hhcCCC-------HHHHHhhc-CCceEEEEeCCCC
Confidence            9865210  000111       23344555 4889998877764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.34  E-value=0.062  Score=39.11  Aligned_cols=34  Identities=24%  Similarity=0.345  Sum_probs=30.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGR   91 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~   91 (202)
                      ++|+|+|| |..|..++..|.+.|. +|.++.|++.
T Consensus         2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            58999998 9999999999999995 8888888754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.26  E-value=0.0071  Score=43.68  Aligned_cols=26  Identities=23%  Similarity=0.387  Sum_probs=23.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeE
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTV   83 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V   83 (202)
                      |||+|.|| |-+|...+.+|+++|++|
T Consensus         1 mkV~VIGa-Gi~GlstA~~L~~~G~~v   26 (246)
T d1kifa1           1 MRVVVIGA-GVIGLSTALCIHERYHSV   26 (246)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHHTTT
T ss_pred             CEEEEECc-hHHHHHHHHHHHHCCCCc
Confidence            68999998 999999999999999754

>d2vjma1 c.123.1.1 (A:2-428) Formyl-CoA transferase {Oxalobacter formigenes [TaxId: 847]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Formyl-CoA transferase
species: Oxalobacter formigenes [TaxId: 847]

Probab=93.25  E-value=0.31  Score=38.23  Aligned_cols=108  Identities=12%  Similarity=0.087  Sum_probs=69.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC-Cccc--------------ccCCCceeEEEccCCCHh---h
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR-SSLR--------------DSWANNVIWHQGNLLSSD---S  114 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~-~~~~--------------~~~~~~~~~~~~D~~~~~---~  114 (202)
                      |..+-||+=.+ ...-|-+..+.|...|++|+-+-+... ....              ...+.+=+.+.+|+.+++   .
T Consensus         3 PL~GirVld~~-~~~agp~~~~~LadlGAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~~   81 (427)
T d2vjma1           3 PLDGINVLDFT-HVQAGPACTQMMGFLGANVIKIERRGSGDMTRGWLQDKPNVDSLYFTMFNCNKRSIELDMKTPEGKEL   81 (427)
T ss_dssp             TTTTCEEEECC-CTTHHHHHHHHHHHTTCEEEEEECTTTCSGGGGSSCSSTTSCCHHHHTTCSSCEEEECCTTSHHHHHH
T ss_pred             CCCCCEEEEcC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCcccccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHHH
Confidence            45677777665 356688888888899999999885421 1100              112345678999998876   4


Q ss_pred             HHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 028890          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~  171 (202)
                      +.++++++|+||+|-.+..-  .-+...       -+.+++.+ .++||+|-+.||.
T Consensus        82 ~~~Lv~~aDv~i~n~~pg~~--~rlGL~-------~~~l~~~N-P~LI~~sisgfG~  128 (427)
T d2vjma1          82 LEQMIKKADVMVENFGPGAL--DRMGFT-------WEYIQELN-PRVILASVKGYAE  128 (427)
T ss_dssp             HHHHHHHCSEEEECCSTTHH--HHTTCC-------HHHHHHHC-TTCEEEEEESSCT
T ss_pred             HHHHHHhCCeeeECCCcchH--HHcCCC-------chhhhhhC-Cccceeeeecccc
Confidence            67788899999999764210  000111       22344555 4899999877764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.065  Score=35.54  Aligned_cols=35  Identities=26%  Similarity=0.429  Sum_probs=29.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHH----HCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSHICREAL----DRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll----~~g~~V~~l~r~~~   91 (202)
                      .++++|.|| |++|-.++..|.    +.|.+|+.+.+.+.
T Consensus        37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            568999998 999999998885    35889999887653

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=92.92  E-value=0.31  Score=33.52  Aligned_cols=76  Identities=16%  Similarity=0.187  Sum_probs=44.7

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCc-ccccCCCceeEEEcc-----------CCCHhhHHHHhcCc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSS-LRDSWANNVIWHQGN-----------LLSSDSWKEALDGV  122 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~-~~~~~~~~~~~~~~D-----------~~~~~~~~~~~~~~  122 (202)
                      |++|.|-|- |.||+.+++.|.+++ .+|+++.-..+.. .......+......+           +.-...+..++.++
T Consensus         1 M~~VgINGf-GRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~v   79 (171)
T d1cf2o1           1 MKAVAINGY-GTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEA   79 (171)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTC
T ss_pred             CeEEEEEcC-cHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCC
Confidence            578999985 999999999998886 4777765432221 111000111111110           11111345566789


Q ss_pred             cEeEEccccC
Q 028890          123 TAVISCVGGF  132 (202)
Q Consensus       123 d~vi~~a~~~  132 (202)
                      |+||=|.|.+
T Consensus        80 DvViEcTG~f   89 (171)
T d1cf2o1          80 DIVIDCTPEG   89 (171)
T ss_dssp             SEEEECCSTT
T ss_pred             CEEEEccCCC
Confidence            9999999874

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=92.92  E-value=0.17  Score=34.88  Aligned_cols=95  Identities=22%  Similarity=0.262  Sum_probs=57.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc----------cccCCCce------------eEEEccCCCHhh
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL----------RDSWANNV------------IWHQGNLLSSDS  114 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~----------~~~~~~~~------------~~~~~D~~~~~~  114 (202)
                      +||.|=|- |-||+.+.+.|..++.+|.++.-..+.+.          ...+...+            .+....-.|++.
T Consensus         1 ikigINGf-GRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i~g~~I~~~~~~~p~~   79 (168)
T d2g82a1           1 MKVGINGF-GRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYVDGKAIRATAVKDPKE   79 (168)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEETTEEEEEECCSSGGG
T ss_pred             CEEEEECC-cHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEecceeEEEEecCChHH
Confidence            47888886 99999999999999999988874321100          00011111            111122345666


Q ss_pred             HHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          115 WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                      +.-.-.++|+|+=|.|.+...+            .++...+.|++|+|+.
T Consensus        80 i~W~~~gvdiViEcTG~f~~~~------------~~~~hl~~gakkViiS  117 (168)
T d2g82a1          80 IPWAEAGVGVVIESTGVFTDAD------------KAKAHLEGGAKKVIIT  117 (168)
T ss_dssp             CCTGGGTEEEEEECSSSCCBHH------------HHTHHHHTTCSEEEES
T ss_pred             CcccccCCceeEeccccccchH------------Hhhhhhccccceeeec
Confidence            6544457999999999764321            1223335688888873

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.87  E-value=0.12  Score=35.52  Aligned_cols=106  Identities=13%  Similarity=0.020  Sum_probs=58.5

Q ss_pred             CCeEEEEccC-ChhHHHHHHHHHHCC----CeEEEEecCCCCccc-----------ccCCCceeEEEccCCCHhhHHHHh
Q 028890           56 SEKLLVLGGN-GFVGSHICREALDRG----LTVASLSRSGRSSLR-----------DSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        56 ~~~vlVtGa~-G~iG~~l~~~Ll~~g----~~V~~l~r~~~~~~~-----------~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      ++||.|.||. .+.+..++..++...    -+++.++.+++....           ........+..  .+|   ..+.+
T Consensus         1 k~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~--~td---~~~al   75 (169)
T d1s6ya1           1 RLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHL--TLD---RRRAL   75 (169)
T ss_dssp             CEEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEE--ESC---HHHHH
T ss_pred             CcEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeee--cCC---chhhc
Confidence            3689999972 244455544444332    388888876543110           00111222221  222   35667


Q ss_pred             cCccEeEEccccCCCCc----c--------------------chhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          120 DGVTAVISCVGGFGSNS----Y--------------------MYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       120 ~~~d~vi~~a~~~~~~~----~--------------------~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      ++.|+||..++....+.    .                    ....|+.-...+++.+++...+.++++-|
T Consensus        76 ~gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt  146 (169)
T d1s6ya1          76 DGADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT  146 (169)
T ss_dssp             TTCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred             CCCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence            89999999998643110    0                    01235555567777788887776666655

>d1q7ea_ c.123.1.1 (A:) Hypothetical protein YfdW {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: CoA-transferase family III (CaiB/BaiF)
superfamily: CoA-transferase family III (CaiB/BaiF)
family: CoA-transferase family III (CaiB/BaiF)
domain: Hypothetical protein YfdW
species: Escherichia coli [TaxId: 562]

Probab=92.86  E-value=0.7  Score=35.95  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=68.5

Q ss_pred             CCCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC-CCccc--------------ccCCCceeEEEccCCCHhh--
Q 028890           52 PPPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG-RSSLR--------------DSWANNVIWHQGNLLSSDS--  114 (202)
Q Consensus        52 ~~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~-~~~~~--------------~~~~~~~~~~~~D~~~~~~--  114 (202)
                      .|..+-||+=.+ ...-|-+..+.|...|++|+-+-+.. .....              ...+.+=+.+..|+.+++.  
T Consensus         3 ~PL~GirVld~~-~~~agp~~~~~Lad~GAeVIkvE~p~~gd~~R~~~~~~~~~~s~~~~~~nr~K~si~lDL~~~~g~~   81 (417)
T d1q7ea_           3 TPLQGIKVLDFT-GVQSGPSCTQMLAWFGADVIKIERPGVGDVTRHQLRDIPDIDALYFTMLNSNKRSIELNTKTAEGKE   81 (417)
T ss_dssp             CTTTTCEEEECC-CTTHHHHHHHHHHHTTCEEEEEECTTTCCGGGTTTCSSTTSCCHHHHTTCTTCEEEECCTTSHHHHH
T ss_pred             CCCCCCEEEEcC-ChhHHHHHHHHHHHhCCeEEEECCCCCCCchhccCCCCCCCccHHHHHhCCCCeEEEEeCcCHHHHH
Confidence            345677777555 35667788888888899999887532 11100              1123456789999988754  


Q ss_pred             -HHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEeccccCc
Q 028890          115 -WKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISAADFGV  171 (202)
Q Consensus       115 -~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS~~~~~  171 (202)
                       +.++++++|+||+|--+..-..  +...       -+.+++.+ .++||+|-+.||.
T Consensus        82 ~~~~Li~~aDv~i~n~~pg~~~r--lGl~-------~~~l~~~n-P~lI~~sisgfG~  129 (417)
T d1q7ea_          82 VMEKLIREADILVENFHPGAIDH--MGFT-------WEHIQEIN-PRLIFGSIKGFDE  129 (417)
T ss_dssp             HHHHHHHHCSEEEECCCC---------CC-------HHHHHHHC-TTCEEEEEESSCT
T ss_pred             HHHHHHhcCcccEeccCCCcHhh--cCCC-------HHHHHhhC-CCEEEEeeecccc
Confidence             5578889999999986532111  1111       22334445 4899999877774

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.83  E-value=0.028  Score=39.00  Aligned_cols=32  Identities=19%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEec
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r   88 (202)
                      +.+|+|.|| |++|-.++..|.+.|.++.++.+
T Consensus         3 ~a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~   34 (183)
T d1d7ya1           3 KAPVVVLGA-GLASVSFVAELRQAGYQGLITVV   34 (183)
T ss_dssp             CSSEEEECC-SHHHHHHHHHHHHHTCCSCEEEE
T ss_pred             CCCEEEECc-cHHHHHHHHHHHhcCCceEEEEE
Confidence            346999997 99999999999999976555443

>d1rq2a1 c.32.1.1 (A:8-205) Cell-division protein FtsZ {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.71  E-value=0.96  Score=31.74  Aligned_cols=92  Identities=18%  Similarity=0.206  Sum_probs=54.2

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCcccccCCCceeEEEc-----------c--------CCCHhhH
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQG-----------N--------LLSSDSW  115 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~~~-----------D--------~~~~~~~  115 (202)
                      +|-|.|- |+-|..++..|.+.+.   +.++++.+...  ........++..+           |        ..+.+.+
T Consensus         3 ~IkViGv-GGaG~n~vn~~~~~~~~~v~~iainTD~~~--L~~~~~~~ki~iG~~~t~G~Gagg~p~~g~~aa~e~~~~I   79 (198)
T d1rq2a1           3 VIKVVGI-GGGGVNAVNRMIEQGLKGVEFIAINTDAQA--LLMSDADVKLDVGRDSTRGLGAGADPEVGRKAAEDAKDEI   79 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESCHHH--HHHCCCSEEEECCTTTC-----CCCHHHHHHHHHHTHHHH
T ss_pred             eEEEEEe-CchHHHHHHHHHHcCCCCceEEEEcchHHH--HhcCCcchhhccccccccCCCcCcChhhhHhhHHHHHHHH
Confidence            4566776 8889999999999874   45555543211  1111112222222           1        1245678


Q ss_pred             HHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCC
Q 028890          116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       116 ~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      .+.+++.|.||-.||..+..      ..-++--+++.|++.+.
T Consensus        80 ~~~l~~~d~vfi~AGlGGgT------GtGaaPviA~iake~g~  116 (198)
T d1rq2a1          80 EELLRGADMVFVTAGEGGGT------GTGGAPVVASIARKLGA  116 (198)
T ss_dssp             HHHHTTCSEEEEEEETTSSH------HHHHHHHHHHHHHHHTC
T ss_pred             HHHhcCCCEEEEEEecCCCC------CcchHHHHHHHHHHcCC
Confidence            88999999999999975421      11222345667777664

>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.61  E-value=0.67  Score=32.61  Aligned_cols=92  Identities=17%  Similarity=0.220  Sum_probs=55.1

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCC---eEEEEecCCCCcccccCCCceeEEEcc-C------------------CCHhhH
Q 028890           58 KLLVLGGNGFVGSHICREALDRGL---TVASLSRSGRSSLRDSWANNVIWHQGN-L------------------LSSDSW  115 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~---~V~~l~r~~~~~~~~~~~~~~~~~~~D-~------------------~~~~~~  115 (202)
                      +|-|.|- |+-|..++..|.+.+.   +.++++.+.... . ..+...++..++ +                  .+.+.+
T Consensus         3 ~IkViGv-GGaG~n~v~~~~~~~~~~v~~iainTD~~~L-~-~~~~~~ki~iG~~~~~g~G~gg~p~~g~~aa~e~~~~I   79 (198)
T d1ofua1           3 VIKVIGV-GGGGGNAVNHMAKNNVEGVEFICANTDAQAL-K-NIAARTVLQLGPGVTKGLGAGANPEVGRQAALEDRERI   79 (198)
T ss_dssp             CEEEEEE-HHHHHHHHHHHHHTTCCSEEEEEEESBTGGG-S-SCSCSEEEECCHHHHTTBCCCSCHHHHHHHHHHTHHHH
T ss_pred             eEEEEEE-CchHHHHHHHHHHcCCCCeEEEEEeCcHHHH-h-cCCccceeccccccccCCCCCCChHHHHHHHHHHHHHH
Confidence            4677886 9999999999999874   556665543221 1 111112222211 1                  135668


Q ss_pred             HHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCC
Q 028890          116 KEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       116 ~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      .+.+++.|.||-+||..+..      ..-++--+.+.+++.+.
T Consensus        80 ~~~l~~~d~vfi~AGlGGGT------GtgaapviA~~ake~g~  116 (198)
T d1ofua1          80 SEVLEGADMVFITTGMGGGT------GTGAAPIIAEVAKEMGI  116 (198)
T ss_dssp             HHHHTTCSEEEEEEETTSSH------HHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCCCeEEEEecCCCCc------cccHHHHHHHHHHHcCC
Confidence            88899999999999975421      11222245666666664

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.60  E-value=0.12  Score=38.06  Aligned_cols=38  Identities=26%  Similarity=0.336  Sum_probs=31.5

Q ss_pred             CCCeEEEEccCChhHHH-----HHHHHHHCCCeEEEEecCCCC
Q 028890           55 PSEKLLVLGGNGFVGSH-----ICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~-----l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      .+.+|+|+.|-|++|+.     |+..|.++|++|.+++-++..
T Consensus        18 ~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp~~   60 (279)
T d1ihua2          18 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDPAA   60 (279)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCCC-
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCC
Confidence            56688888889999995     578888999999999998654

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.24  Score=40.48  Aligned_cols=99  Identities=8%  Similarity=0.078  Sum_probs=58.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCCCCc--c--------c--------------ccCCCc--eeEEEc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSGRSS--L--------R--------------DSWANN--VIWHQG  107 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~~~~--~--------~--------------~~~~~~--~~~~~~  107 (202)
                      ...+|+|.|+ |++|..+++.|...|. ++++++.+.-..  .        .              ...++.  ++++..
T Consensus        24 ~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk~ka~~~~~~L~~lNp~v~i~~~~~  102 (529)
T d1yova1          24 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEE  102 (529)
T ss_dssp             HHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTSBHHHHHHHHHHTTCTTSBCCEESS
T ss_pred             hCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCCHHHHHHHHHHHHhCCCCcEEEEcC
Confidence            3468999997 8999999999999996 788877543210  0        0              011232  333333


Q ss_pred             cCCCH-hhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          108 NLLSS-DSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       108 D~~~~-~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      +..+. +.-.+.+.++|+||.+...           ......+-+.|++.++ .+|...+
T Consensus       103 ~~~~~~~~~~~~~~~~dvVv~~~~~-----------~~~~~~l~~~c~~~~i-p~i~~~~  150 (529)
T d1yova1         103 SPENLLDNDPSFFCRFTVVVATQLP-----------ESTSLRLADVLWNSQI-PLLICRT  150 (529)
T ss_dssp             CHHHHHHSCGGGGGGCSEEEEESCC-----------HHHHHHHHHHHHHHTC-CEEEEEE
T ss_pred             CchhhhhhHHHHhcCCCEEEECCCC-----------HHHHHHHHHHHHHcCC-CEEEEec
Confidence            22110 1111345568888866532           2333456778888876 5777766

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=92.49  E-value=0.095  Score=38.44  Aligned_cols=36  Identities=19%  Similarity=0.136  Sum_probs=31.6

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      ..++++|+|-|- |.+|+++++.|.+.|++|+.++-.
T Consensus        28 ~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~   63 (242)
T d1v9la1          28 GIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI   63 (242)
T ss_dssp             CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence            467899999996 999999999999999999887643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.16  E-value=0.21  Score=33.73  Aligned_cols=35  Identities=29%  Similarity=0.318  Sum_probs=29.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC-eEEEEecCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL-TVASLSRSG   90 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~-~V~~l~r~~   90 (202)
                      .+++|+|.|| |.+|.-.+..+++.|+ .|+++.|.+
T Consensus        44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            4568999998 9999999999999987 577777764

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=92.12  E-value=0.061  Score=39.63  Aligned_cols=35  Identities=14%  Similarity=0.276  Sum_probs=29.6

Q ss_pred             CCeEEEEccCChhHHH-----HHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSH-----ICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~-----l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |++|.|+| -|++|+-     |+..|.+.|++|.++|-++.
T Consensus         1 mr~Iai~g-KGGvGKTT~a~nLA~~LA~~G~rVllID~D~q   40 (269)
T d1cp2a_           1 MRQVAIYG-KGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPK   40 (269)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             CCEEEEEC-CCcCCHHHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            57899998 8999984     56688889999999998864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.086  Score=39.47  Aligned_cols=31  Identities=32%  Similarity=0.550  Sum_probs=28.6

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      |+|+|| |.-|...+..|.++|++|+++.+++
T Consensus         2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence            789998 9999999999999999999998764

>d1fmta2 c.65.1.1 (A:1-206) Methionyl-tRNAfmet formyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: Methionyl-tRNAfmet formyltransferase
species: Escherichia coli [TaxId: 562]

Probab=92.00  E-value=0.37  Score=33.97  Aligned_cols=76  Identities=11%  Similarity=0.059  Sum_probs=47.1

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc------------cCCCceeEEEccCCCHhhHHHHhc--
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------------SWANNVIWHQGNLLSSDSWKEALD--  120 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~------------~~~~~~~~~~~D~~~~~~~~~~~~--  120 (202)
                      ..|||++.|. +..+..+++.|++.|++|.++...+++....            ....++.....+..+.+...+.++  
T Consensus         2 ~~mKI~f~G~-~~~~~~~L~~L~~~~~~i~~Vit~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (206)
T d1fmta2           2 ESLRIIFAGT-PDFAARHLDALLSSGHNVVGVFTQPDRPAGRGKKLMPSPVKVLAEEKGLPVFQPVSLRPQENQQLVAEL   80 (206)
T ss_dssp             CCCEEEEEEC-SHHHHHHHHHHHHTTCEEEEEECCCCBC------CBCCHHHHHHHHTTCCEECCSCSCSHHHHHHHHHT
T ss_pred             CCcEEEEECC-CHHHHHHHHHHHhCCCCEEEEEeCCCcccccCccccccchhhhhhccCccccccccccchhhHHHHhhh
Confidence            3578999985 7889899999999999987766443221100            001344455554444444455554  


Q ss_pred             CccEeEEcccc
Q 028890          121 GVTAVISCVGG  131 (202)
Q Consensus       121 ~~d~vi~~a~~  131 (202)
                      ++|+++.+.+.
T Consensus        81 ~~d~~v~~~~~   91 (206)
T d1fmta2          81 QADVMVVVAYG   91 (206)
T ss_dssp             TCSEEEEESCC
T ss_pred             cceEEEeeccc
Confidence            57887777663

>d2bw0a2 c.65.1.1 (A:1-203) 10-formyltetrahydrofolate dehydrogenase domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Formyltransferase
superfamily: Formyltransferase
family: Formyltransferase
domain: 10-formyltetrahydrofolate dehydrogenase domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.98  E-value=0.24  Score=35.05  Aligned_cols=73  Identities=12%  Similarity=0.075  Sum_probs=45.1

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccc------cCCCceeEEE------ccCCCHhhHHHHhc-Ccc
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRD------SWANNVIWHQ------GNLLSSDSWKEALD-GVT  123 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~------~~~~~~~~~~------~D~~~~~~~~~~~~-~~d  123 (202)
                      |||++.|. +..|..+++.|+++|++|.++...+++....      ....++.++.      -+..+++.++.+.+ ++|
T Consensus         1 MkI~~~G~-~~~~~~~l~~L~~~~~~i~~V~t~p~~~~~~~~v~~~a~~~~ipv~~~~~~~~~~~~~~~~~~~l~~~~~D   79 (203)
T d2bw0a2           1 MKIAVIGQ-SLFGQEVYCHLRKEGHEVVGVFTVPDKDGKADPLGLEAEKDGVPVFKYSRWRAKGQALPDVVAKYQALGAE   79 (203)
T ss_dssp             CEEEEECC-HHHHHHHHHHHHHTTCEEEEEEECCCCSSCCCHHHHHHHHHTCCEEECSCCEETTEECHHHHHHHHTTCCS
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHCCCcEEEEEcCCCcCcCCChhhhhHHhcCCcccccccccccccccHHHHHHHHHhCCC
Confidence            68888886 7899999999999999998776443321110      0012233332      23334555544433 589


Q ss_pred             EeEEccc
Q 028890          124 AVISCVG  130 (202)
Q Consensus       124 ~vi~~a~  130 (202)
                      ++|.+..
T Consensus        80 liv~~~~   86 (203)
T d2bw0a2          80 LNVLPFC   86 (203)
T ss_dssp             EEEESSC
T ss_pred             ceEEeec
Confidence            9888775

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=91.59  E-value=0.52  Score=32.24  Aligned_cols=95  Identities=19%  Similarity=0.194  Sum_probs=56.0

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcc----------cccCCCcee------------EEEccCCCHh
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL----------RDSWANNVI------------WHQGNLLSSD  113 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~----------~~~~~~~~~------------~~~~D~~~~~  113 (202)
                      +||.|-|- |-||+.+.+++++++ .+|+++.-..+.+.          .-.+...++            +-...-.+++
T Consensus         2 ikigINGF-GRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvhG~~~~~v~~~~~~l~ing~~I~i~~~~~p~   80 (166)
T d1gado1           2 IKVGINGF-GRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPA   80 (166)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEECC-cHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCCCCcCCeEEEeCCEEEECCEEEEEEeCCChH
Confidence            47888886 999999999999985 58887764322110          000111111            1111224566


Q ss_pred             hHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          114 SWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       114 ~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                      .+.---.++|+|+=|.|.+...+.            ++.-.+.|++++|+.
T Consensus        81 ~i~W~~~gvDiViEcTG~f~t~~~------------~~~hl~~gakkViiS  119 (166)
T d1gado1          81 NLKWDEVGVDVVAEATGLFLTDET------------ARKHITAGAKKVVMT  119 (166)
T ss_dssp             GGCHHHHTCSEEEECSSSCCSHHH------------HTHHHHTTCSEEEES
T ss_pred             HCCccccCCCEEEEccccccCHHH------------HHHHhcCCCceEEee
Confidence            655444489999999998653211            222335688887753

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=91.45  E-value=0.12  Score=37.22  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=29.8

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      -|+|+|| |-.|...+..|.++|++|.++.+.+.
T Consensus         4 DViIIGa-G~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            3899998 99999999999999999999998753

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=91.36  E-value=0.56  Score=32.03  Aligned_cols=72  Identities=18%  Similarity=0.138  Sum_probs=42.3

Q ss_pred             CCCeEEEEccCChhHHH-HHHHHHHC-C----CeEEEEecCCCCccc---------ccCCCceeEEEccCCCHhhHHHHh
Q 028890           55 PSEKLLVLGGNGFVGSH-ICREALDR-G----LTVASLSRSGRSSLR---------DSWANNVIWHQGNLLSSDSWKEAL  119 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~-l~~~Ll~~-g----~~V~~l~r~~~~~~~---------~~~~~~~~~~~~D~~~~~~~~~~~  119 (202)
                      +..||.|.|| |.+|.. ++..|+.. .    .++++++.++++...         ........+...     .+..+++
T Consensus         2 k~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~eal   75 (167)
T d1u8xx1           2 KSFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAAT-----TDPEEAF   75 (167)
T ss_dssp             CCEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEE-----SCHHHHH
T ss_pred             CCceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEec-----CChhhcc
Confidence            3458999998 556654 44445443 2    388988887644210         001122222221     1246778


Q ss_pred             cCccEeEEccccC
Q 028890          120 DGVTAVISCVGGF  132 (202)
Q Consensus       120 ~~~d~vi~~a~~~  132 (202)
                      +++|+||..+|..
T Consensus        76 ~~AD~Vvitag~~   88 (167)
T d1u8xx1          76 TDVDFVMAHIRVG   88 (167)
T ss_dssp             SSCSEEEECCCTT
T ss_pred             CCCCEEEECCCcC
Confidence            9999999999864

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=91.21  E-value=0.11  Score=38.29  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEec
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r   88 (202)
                      ..++++++|-|- |.+|.++++.|.+.|++|++++-
T Consensus        33 ~l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD   67 (255)
T d1bgva1          33 TLVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSG   67 (255)
T ss_dssp             CSTTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEE
T ss_pred             CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEec
Confidence            467889999996 99999999999999999988753

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.16  E-value=0.3  Score=33.60  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=46.8

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC-c-c---------cccCCCcee------------EEEccCCCHhh
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS-S-L---------RDSWANNVI------------WHQGNLLSSDS  114 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~-~-~---------~~~~~~~~~------------~~~~D~~~~~~  114 (202)
                      ||.|-|= |-||+.+.+++++++.+|+++.-.... + .         .-.++..++            +....-.++++
T Consensus         2 kIgINGf-GRIGR~~~R~~~~~~~~ivaINd~~~~~~~~~yLlkyDS~hG~~~~~i~~~~~~l~ing~~I~~~~~~~p~~   80 (169)
T d1dssg1           2 KIGINGF-GRIGRLVLRAALEMGAQVVAVNDPFIALEYMVYMFKYDSTHGMFKGEVKAEDGALVVDGKKITVFNEMKPEN   80 (169)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHCCTTTCCCSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             eEEEECC-cHHHHHHHHHHHhCCCcEEEECCCCcCHHHHHHHHhcccccCCcCCeEEEeCCEEEECCEEEEEEecCChHH
Confidence            6788885 999999999999999998887643221 1 0         000111111            11112245666


Q ss_pred             HHHHhcCccEeEEccccCC
Q 028890          115 WKEALDGVTAVISCVGGFG  133 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~~  133 (202)
                      +.-.-.++|+||=|.|.+.
T Consensus        81 i~W~~~gvD~ViEcTG~f~   99 (169)
T d1dssg1          81 IPWSKAGAEYIVESTGVFT   99 (169)
T ss_dssp             CCHHHHTCCEEEECSSSCC
T ss_pred             CCccccCCCEEEecCceEc
Confidence            5444448999999999864

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.26  Score=33.27  Aligned_cols=94  Identities=13%  Similarity=0.011  Sum_probs=52.8

Q ss_pred             CeEEEEccCChhHHH-HHHHHHHC-CCeEEEEe-cCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCC
Q 028890           57 EKLLVLGGNGFVGSH-ICREALDR-GLTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFG  133 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~-l~~~Ll~~-g~~V~~l~-r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~  133 (202)
                      +++.|.|. |.+|.. .+..|... +.+++++. ++..........-++     +.  .+.++++.+++|+|+-+.....
T Consensus         2 iri~iIG~-G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~-----~~--~~~~~~l~~~~D~V~I~tp~~~   73 (164)
T d1tlta1           2 LRIGVVGL-GGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRI-----PY--ADSLSSLAASCDAVFVHSSTAS   73 (164)
T ss_dssp             EEEEEECC-STHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTC-----CB--CSSHHHHHTTCSEEEECSCTTH
T ss_pred             CEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccc-----cc--cccchhhhhhcccccccccchh
Confidence            58999996 999975 56666554 66776654 544332111000111     12  2234555678999887764311


Q ss_pred             ----------CC-----ccchhhhHHHHHHHHHHHHHcCC
Q 028890          134 ----------SN-----SYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       134 ----------~~-----~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                                ..     +.-+-.+......+++++++.++
T Consensus        74 h~~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~  113 (164)
T d1tlta1          74 HFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKL  113 (164)
T ss_dssp             HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccccceeeccccccCCHHHHHHHHHHHHHcCC
Confidence                      00     11123556677778888888774

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=90.74  E-value=0.21  Score=33.01  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=29.3

Q ss_pred             CCCeEEEEccC---ChhHHHHHHHHHHCCCeEEEEecC
Q 028890           55 PSEKLLVLGGN---GFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        55 ~~~~vlVtGa~---G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      +.++|.|.|++   +..|..+++.|++.||+++.+.-+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~   49 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPR   49 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGG
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEec
Confidence            35689999998   568999999999999998876543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.11  Score=36.56  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=26.8

Q ss_pred             CeEEEEccCChhHH-----HHHHHHHHCCCeEEEEe
Q 028890           57 EKLLVLGGNGFVGS-----HICREALDRGLTVASLS   87 (202)
Q Consensus        57 ~~vlVtGa~G~iG~-----~l~~~Ll~~g~~V~~l~   87 (202)
                      |+++|||...++|+     .|+..|.++|++|.+++
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            68999997669998     57888889999998886

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.52  E-value=0.15  Score=36.22  Aligned_cols=35  Identities=17%  Similarity=0.192  Sum_probs=29.9

Q ss_pred             CCeEEEEccCChhHH-----HHHHHHHHCCCeEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGS-----HICREALDRGLTVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~-----~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      ||.|.|+++.|++|+     +++..|.++|++|..++-+.
T Consensus         1 ~kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           1 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            578999999999998     46778888999999998764

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.47  E-value=0.41  Score=34.10  Aligned_cols=74  Identities=9%  Similarity=-0.035  Sum_probs=46.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----------------------ccccCCCceeEEEccCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----------------------LRDSWANNVIWHQGNLL  110 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----------------------~~~~~~~~~~~~~~D~~  110 (202)
                      ..+.+||..|+..  | ..+..|+++|++|++++-++...                       .......+++++.+|+.
T Consensus        44 ~~~~rvLd~GCG~--G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~  120 (229)
T d2bzga1          44 KSGLRVFFPLCGK--A-VEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF  120 (229)
T ss_dssp             CCSCEEEETTCTT--C-THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred             CCCCEEEEeCCCC--c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence            3567999999854  3 34677788999999998775321                       00112357888989876


Q ss_pred             CHhhHHHHhcCccEeEEccccC
Q 028890          111 SSDSWKEALDGVTAVISCVGGF  132 (202)
Q Consensus       111 ~~~~~~~~~~~~d~vi~~a~~~  132 (202)
                      +....  ....+|+|+-.....
T Consensus       121 ~l~~~--~~~~fd~i~~~~~l~  140 (229)
T d2bzga1         121 DLPRT--NIGKFDMIWDRGALV  140 (229)
T ss_dssp             GGGGS--CCCCEEEEEESSSTT
T ss_pred             hcccc--ccCceeEEEEEEEEE
Confidence            54321  112467777665543

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.46  E-value=0.12  Score=35.82  Aligned_cols=94  Identities=16%  Similarity=0.116  Sum_probs=54.7

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC-CCeEEEE-ecCCCCccc--cc--CCCceeEEEccCCCHhhHHHHh--cCccEeEEc
Q 028890           57 EKLLVLGGNGFVGSHICREALDR-GLTVASL-SRSGRSSLR--DS--WANNVIWHQGNLLSSDSWKEAL--DGVTAVISC  128 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l-~r~~~~~~~--~~--~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi~~  128 (202)
                      .|+.|.|+ |.+|+..++.|... +.+|+++ +++......  ..  ......+    +.|   +++++  .++|+|+-+
T Consensus         2 iki~iIG~-G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~----~~~---~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           2 IRIGVMGC-ADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKI----HGS---YESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEEESC-CTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEE----ESS---HHHHHHCTTCCEEEEC
T ss_pred             eEEEEEcC-CHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceee----cCc---HHHhhhccccceeeec
Confidence            58999996 89999999999876 5688765 444322111  10  1111222    123   44444  358998877


Q ss_pred             cccCC----------CC-----ccchhhhHHHHHHHHHHHHHcCC
Q 028890          129 VGGFG----------SN-----SYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       129 a~~~~----------~~-----~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      .....          ..     +.-...+......+++.+++.++
T Consensus        74 tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~  118 (184)
T d1ydwa1          74 LPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV  118 (184)
T ss_dssp             CCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred             ccchhhcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence            65321          00     11223567777788888877764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.43  E-value=0.14  Score=36.41  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHC--CCeEEEEecCCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDR--GLTVASLSRSGR   91 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~--g~~V~~l~r~~~   91 (202)
                      ++|+|+|| |--|...+..|.++  |++|+++.+.+.
T Consensus         2 ~kv~iIGa-GpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGS-GPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECc-cHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            48999998 99999999999875  789999988753

>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Peptidoglycan biosynthesis glycosyltransferase MurG
domain: Peptidoglycan biosynthesis glycosyltransferase MurG
species: Escherichia coli [TaxId: 562]

Probab=89.77  E-value=0.24  Score=36.99  Aligned_cols=33  Identities=27%  Similarity=0.568  Sum_probs=23.2

Q ss_pred             CeEEEEcc-C-Chh--HHHHHHHHHHCCCeEEEEecC
Q 028890           57 EKLLVLGG-N-GFV--GSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        57 ~~vlVtGa-~-G~i--G~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      |||+|++| | |.+  ..+|+++|.++||+|..+...
T Consensus         1 kkili~~~GtGGHv~~a~al~~~L~~~G~eV~~i~~~   37 (351)
T d1f0ka_           1 KRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTA   37 (351)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHTTTCEEEEEECT
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEEeC
Confidence            57777764 3 333  445889999999999877644

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=89.56  E-value=0.19  Score=38.37  Aligned_cols=30  Identities=17%  Similarity=0.251  Sum_probs=27.9

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      |+|+|+ |+-|..++.+|.++|++|.++-+-
T Consensus         5 VIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG   34 (367)
T d1n4wa1           5 AVVIGT-GYGAAVSALRLGEAGVQTLMLEMG   34 (367)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEeCc-CHHHHHHHHHHHHCcCeEEEEecC
Confidence            789997 999999999999999999999874

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.46  E-value=0.18  Score=35.43  Aligned_cols=74  Identities=14%  Similarity=0.116  Sum_probs=51.5

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc-----ccccCCCceeEEEccCCCHhhHHHHh--cCccEeEEccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS-----LRDSWANNVIWHQGNLLSSDSWKEAL--DGVTAVISCVG  130 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~-----~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi~~a~  130 (202)
                      .+=+|-|+|+.-.++++.+ . +.+|+++++++...     .......++.++.+++.+.+.+..-+  ..+|.|+.-.|
T Consensus        27 ~lD~t~G~Gghs~~il~~~-~-~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlG  104 (192)
T d1m6ya2          27 ILDCTVGEGGHSRAILEHC-P-GCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILMDLG  104 (192)
T ss_dssp             EEETTCTTSHHHHHHHHHC-T-TCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECS
T ss_pred             EEEecCCCcHHHHHHHhcC-C-CCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeeeccc
Confidence            3445677777777887766 3 46899999986531     11223568999999998776665443  47899998888


Q ss_pred             cCC
Q 028890          131 GFG  133 (202)
Q Consensus       131 ~~~  133 (202)
                      ...
T Consensus       105 vSs  107 (192)
T d1m6ya2         105 VST  107 (192)
T ss_dssp             CCH
T ss_pred             hhH
Confidence            743

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.40  E-value=0.17  Score=37.49  Aligned_cols=35  Identities=14%  Similarity=0.261  Sum_probs=29.5

Q ss_pred             CCeEEEEccCChhHHH-----HHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSH-----ICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~-----l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |++|.|.| -||+|+-     |+..|.+.|++|.+++-++.
T Consensus         2 Mr~Iaisg-KGGVGKTT~a~NLA~~LA~~G~rVLlID~DpQ   41 (289)
T d2afhe1           2 MRQCAIYG-KGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK   41 (289)
T ss_dssp             CEEEEEEE-CTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             ccEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            67888887 7999984     77888899999999998753

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.36  E-value=0.21  Score=37.14  Aligned_cols=32  Identities=25%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      -|+|+|+ |..|...+..|.++|++|.++.+.+
T Consensus        18 DVlVIG~-G~aGl~aA~~la~~G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGS-GGAGFSAAISATDSGAKVILIEKEP   49 (308)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEecCC
Confidence            4899998 9999999999999999999998765

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.30  E-value=1.9  Score=29.92  Aligned_cols=31  Identities=19%  Similarity=0.321  Sum_probs=24.5

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-----CeEEEEe
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-----LTVASLS   87 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-----~~V~~l~   87 (202)
                      .++|.|=|- |-||+.+.+++++++     .+|+.+.
T Consensus         2 ~ikigINGF-GRIGR~vlR~~~~~~~~~~~i~iv~In   37 (190)
T d1k3ta1           2 PIKVGINGF-GRIGRMVFQALCEDGLLGTEIDVVAVV   37 (190)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHTTCBTTTEEEEEEE
T ss_pred             CeEEEEECC-ChHHHHHHHHHHHcCCCCCCeEEEEEe
Confidence            468999996 999999999999875     2555554

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=89.13  E-value=0.18  Score=34.25  Aligned_cols=97  Identities=11%  Similarity=-0.045  Sum_probs=52.5

Q ss_pred             CeEEEEccCChhHHH-HHHHHHHC-CCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccccCCC
Q 028890           57 EKLLVLGGNGFVGSH-ICREALDR-GLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVGGFGS  134 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~-l~~~Ll~~-g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~~~  134 (202)
                      +|+.|.|+ |.+|+. ....|.+. +.+++++++++.........-++...   +.|.+++.+  .++|+|+-+......
T Consensus         2 irvgiiG~-G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~ll~--~~iD~V~I~tp~~~H   75 (167)
T d1xeaa1           2 LKIAMIGL-GDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSAT---CTDYRDVLQ--YGVDAVMIHAATDVH   75 (167)
T ss_dssp             EEEEEECC-CHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCC---CSSTTGGGG--GCCSEEEECSCGGGH
T ss_pred             eEEEEEcC-CHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccc---cccHHHhcc--cccceeccccccccc
Confidence            58999997 888865 55666555 45776666554321110000111111   123332221  368998877653210


Q ss_pred             -----------C----ccchhhhHHHHHHHHHHHHHcCCC
Q 028890          135 -----------N----SYMYKINGTANINAIRAASEKGVK  159 (202)
Q Consensus       135 -----------~----~~~~~~n~~~~~~~~~~~~~~~~~  159 (202)
                                 .    +.-+..+......+++++++.+..
T Consensus        76 ~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~~  115 (167)
T d1xeaa1          76 STLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  115 (167)
T ss_dssp             HHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCCE
Confidence                       0    112245677778888998888753

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.08  E-value=0.26  Score=34.87  Aligned_cols=34  Identities=21%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             CCeEEEEccCChhHHH-----HHHHHHHCCCeEEEEecC
Q 028890           56 SEKLLVLGGNGFVGSH-----ICREALDRGLTVASLSRS   89 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~-----l~~~Ll~~g~~V~~l~r~   89 (202)
                      ++.|.|+|+.|++|+.     |+..|.+.|++|.+++-+
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            4678999999999984     677778899999999855

>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Pyrococcus abyssi [TaxId: 29292]

Probab=88.89  E-value=0.29  Score=37.70  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=23.8

Q ss_pred             CeEEEEcc------CChhH---HHHHHHHHHCCCeEEEEec
Q 028890           57 EKLLVLGG------NGFVG---SHICREALDRGLTVASLSR   88 (202)
Q Consensus        57 ~~vlVtGa------~G~iG---~~l~~~Ll~~g~~V~~l~r   88 (202)
                      |||++.+.      +||+|   .+|+++|.++||+|+++..
T Consensus         1 MkIl~~~~~~pP~~~GG~~~~~~~La~~L~~~Gh~V~Vvtp   41 (437)
T d2bisa1           1 MKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFTP   41 (437)
T ss_dssp             CEEEEECSCCTTCCSSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CEEEEECCccCCcccCCHHHHHHHHHHHHHHcCCEEEEEec
Confidence            46666553      46666   4578999999999998874

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=88.76  E-value=0.26  Score=35.58  Aligned_cols=33  Identities=15%  Similarity=0.335  Sum_probs=30.2

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .|+|+|| |--|...+-.|.++|++|.++.+.+.
T Consensus         6 DViIIGa-G~aGl~aA~~la~~G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGA-GAAGLFCAAQLAKLGKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cEEEECc-CHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            5899998 99999999999999999999998754

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=88.52  E-value=0.24  Score=37.18  Aligned_cols=34  Identities=21%  Similarity=0.340  Sum_probs=29.1

Q ss_pred             eEEEEccCChhHHHHHHHHH-----HCCCeEEEEecCCCC
Q 028890           58 KLLVLGGNGFVGSHICREAL-----DRGLTVASLSRSGRS   92 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll-----~~g~~V~~l~r~~~~   92 (202)
                      -|+|.|| |-.|..++..|.     ++|++|+++.|++..
T Consensus         9 DV~IvGa-G~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           9 DVLIVGA-GPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CEEEECc-CHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            4899998 999999999996     469999999987543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.3  Score=34.18  Aligned_cols=31  Identities=23%  Similarity=0.267  Sum_probs=28.4

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      ++|+|| |..|...+..+.+.|.+|.++.+..
T Consensus         5 vvVIG~-G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGG-GSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            789998 9999999999999999999998753

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.05  E-value=0.62  Score=31.55  Aligned_cols=95  Identities=20%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCC--CeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEc
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRG--LTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISC  128 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g--~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~  128 (202)
                      +..+.+|.|.|. |.+|+..++.|.+.+  ..+.+++....+.....  .....     .+   ++++++  ++|+|+-+
T Consensus         4 ~~~k~kv~iIG~-G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~---~~e~l~~~~iD~V~I~   72 (172)
T d1lc0a1           4 NSGKFGVVVVGV-GRAGSVRLRDLKDPRSAAFLNLIGFVSRRELGSL--DEVRQ-----IS---LEDALRSQEIDVAYIC   72 (172)
T ss_dssp             CCCSEEEEEECC-SHHHHHHHHHHTSHHHHTTEEEEEEECSSCCCEE--TTEEB-----CC---HHHHHHCSSEEEEEEC
T ss_pred             CCCCcEEEEEcC-CHHHHHHHHHHHhCCCCcEEEEEeccchHHHHHh--hccCc-----CC---HHHHHhCCCcchhhhc
Confidence            345568999997 999999888876542  22333332222111100  11111     12   445554  58888877


Q ss_pred             cccCCC-----------C----ccchhhhHHHHHHHHHHHHHcCC
Q 028890          129 VGGFGS-----------N----SYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       129 a~~~~~-----------~----~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      ......           .    +.-+..++.....+++++++.+.
T Consensus        73 tp~~~H~~~~~~al~~gk~V~~EKP~a~~~~e~~~l~~~a~~~~~  117 (172)
T d1lc0a1          73 SESSSHEDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR  117 (172)
T ss_dssp             SCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccchhhhcCCCccccHHHHHHHHHHHHHcCC
Confidence            653210           0    11224577777888888888874

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.05  E-value=0.29  Score=35.91  Aligned_cols=32  Identities=25%  Similarity=0.351  Sum_probs=29.0

Q ss_pred             eEEEEccCChhHHHHHHHHHHC-CCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDR-GLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~~   90 (202)
                      -|+|+|| |.-|...+..|.++ |++|.++.+.+
T Consensus        35 DViVIGa-GpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          35 DVVVVGA-GSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHccCCeEEEEecCC
Confidence            4999998 99999999999875 99999999875

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=88.02  E-value=0.25  Score=33.73  Aligned_cols=72  Identities=13%  Similarity=0.033  Sum_probs=45.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcc------------------cccCCCceeEEEccCCCHhhH
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSL------------------RDSWANNVIWHQGNLLSSDSW  115 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~------------------~~~~~~~~~~~~~D~~~~~~~  115 (202)
                      ..+.+||..|+..+  . .+..|+++|++|++++.++....                  .........++.+|..+....
T Consensus        19 ~~~~rvLd~GCG~G--~-~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          19 VPGARVLVPLCGKS--Q-DMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CTTCEEEETTTCCS--H-HHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCEEEEecCcCC--H-HHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            35679999998543  3 55577788999999998743200                  001134567888888765532


Q ss_pred             HHHhcCccEeEEccc
Q 028890          116 KEALDGVTAVISCVG  130 (202)
Q Consensus       116 ~~~~~~~d~vi~~a~  130 (202)
                      .  ....|.|+....
T Consensus        96 ~--~~~~D~i~~~~~  108 (201)
T d1pjza_          96 D--IGHCAAFYDRAA  108 (201)
T ss_dssp             H--HHSEEEEEEESC
T ss_pred             c--ccceeEEEEEee
Confidence            2  235677765443

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.89  E-value=0.26  Score=34.90  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=27.9

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCC--eEEEEecC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGL--TVASLSRS   89 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~--~V~~l~r~   89 (202)
                      +...++|.|| |++|-.++..|.+.|+  +|+++++.
T Consensus         3 ~~~~~vIvG~-G~aG~~~A~~Lr~~~~~~~I~li~~e   38 (213)
T d1m6ia1           3 SHVPFLLIGG-GTAAFAAARSIRARDPGARVLIVSED   38 (213)
T ss_dssp             SEEEEEEESC-SHHHHHHHHHHHHHSTTCEEEEEESS
T ss_pred             CCCCEEEECC-cHHHHHHHHHHHhcCCCCcEEEEeCC
Confidence            3456889997 9999999999998876  68888764

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.63  E-value=1.3  Score=30.20  Aligned_cols=93  Identities=16%  Similarity=0.187  Sum_probs=52.7

Q ss_pred             eEEEEccCChhHHHHHHHHHHC---CCeEEEEecCCCCcc----------cccCCCcee------------EEEccCCCH
Q 028890           58 KLLVLGGNGFVGSHICREALDR---GLTVASLSRSGRSSL----------RDSWANNVI------------WHQGNLLSS  112 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~---g~~V~~l~r~~~~~~----------~~~~~~~~~------------~~~~D~~~~  112 (202)
                      ||.|=|- |-||+.+.++++++   +.+|+++.-..+.+.          .-.++..++            +....-.++
T Consensus         2 kIgINGf-GRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~hG~~~~~v~~~~~~l~ing~~I~~~~~~~p   80 (169)
T d1hdgo1           2 RVAINGF-GRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP   80 (169)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred             EEEEECC-ChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhccccccccCceEEEECCEEEECCEEEEEEeCCCh
Confidence            6788885 99999999999974   357777753221100          000111111            111122456


Q ss_pred             hhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEE
Q 028890          113 DSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVY  163 (202)
Q Consensus       113 ~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~  163 (202)
                      +++.---.++|+||=|.|.+...+.            ++.-.+.|++++|+
T Consensus        81 ~~i~W~~~gvD~ViEcTG~f~t~~~------------~~~hl~~GakkVii  119 (169)
T d1hdgo1          81 SKLPWKDLGVDFVIESTGVFRNREK------------AELHLQAGAKKVII  119 (169)
T ss_dssp             GGSCHHHHTCCEEEECSSSCCBHHH------------HTHHHHTTCSEEEE
T ss_pred             hhCCccccCCCEEEEecceeccccc------------hhhhccCCCceEEE
Confidence            6554333379999999998643211            22223568888777

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.58  E-value=0.16  Score=34.63  Aligned_cols=70  Identities=16%  Similarity=-0.012  Sum_probs=40.9

Q ss_pred             CeEEEEccCChhHHHHHHH-HHHC-----CCeEEEEecCCCCccc------ccCCCceeEEEccCCCHhhHHHHhcCccE
Q 028890           57 EKLLVLGGNGFVGSHICRE-ALDR-----GLTVASLSRSGRSSLR------DSWANNVIWHQGNLLSSDSWKEALDGVTA  124 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~-Ll~~-----g~~V~~l~r~~~~~~~------~~~~~~~~~~~~D~~~~~~~~~~~~~~d~  124 (202)
                      |||.|.|| |.+|...+-. |+..     +.++..++.++++...      ...........   +  .+..+.++++|+
T Consensus         1 mKIaiIGa-Gs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~---t--~~~~~~l~~aDv   74 (162)
T d1up7a1           1 MRIAVIGG-GSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLI---S--DTFEGAVVDAKY   74 (162)
T ss_dssp             CEEEEETT-TCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEE---C--SSHHHHHTTCSE
T ss_pred             CEEEEECC-CHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEE---e--cCcccccCCCCE
Confidence            58999998 6677655533 3221     3589999987654211      00112222221   1  123567789999


Q ss_pred             eEEccccC
Q 028890          125 VISCVGGF  132 (202)
Q Consensus       125 vi~~a~~~  132 (202)
                      ||..++..
T Consensus        75 VVita~~~   82 (162)
T d1up7a1          75 VIFQFRPG   82 (162)
T ss_dssp             EEECCCTT
T ss_pred             EEEecccC
Confidence            99999864

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.48  E-value=0.49  Score=34.34  Aligned_cols=36  Identities=19%  Similarity=0.313  Sum_probs=30.2

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHC-CCeEEEEecC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDR-GLTVASLSRS   89 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~   89 (202)
                      +.++++|+|-|- |.+|.++++.|.+. |.+|+.+.-.
T Consensus        29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~   65 (239)
T d1gtma1          29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS   65 (239)
T ss_dssp             CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence            457899999997 99999999999865 8998887643

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.07  E-value=1.6  Score=29.77  Aligned_cols=95  Identities=17%  Similarity=0.261  Sum_probs=52.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC----CeEEEEecCCCCcc-c---------ccCCCce------------eEEEccCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG----LTVASLSRSGRSSL-R---------DSWANNV------------IWHQGNLL  110 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g----~~V~~l~r~~~~~~-~---------~~~~~~~------------~~~~~D~~  110 (202)
                      +||.|=|= |.||+.+.+++++++    .+|+++.-..+.+. .         -.++..+            .+....-.
T Consensus         2 ikigINGf-GRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~   80 (173)
T d1obfo1           2 IRVAINGY-GRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVVNGDKIRVDANR   80 (173)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCS
T ss_pred             eEEEEECC-cHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEECCEEEEEEecC
Confidence            47888885 999999999999753    35666553221100 0         0011111            11111224


Q ss_pred             CHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEE
Q 028890          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYI  164 (202)
Q Consensus       111 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~  164 (202)
                      |++.+.-.--++|+|+=|.|.+.....            ++.-.+.|++++|+.
T Consensus        81 ~p~~i~W~~~gvDiViEcTG~f~~~~~------------a~~hl~~GakkViiS  122 (173)
T d1obfo1          81 NPAQLPWGALKVDVVLECTGFFTTKEK------------AGAHIKGGAKKVIIS  122 (173)
T ss_dssp             CGGGSCTTTTTCSEEEECSSSCCSHHH------------HHHHHHHTCSEEEES
T ss_pred             CHHHCcccccccceEEEecccccCHHH------------HHHHhccCCcceEEe
Confidence            566554433479999999997542211            222234588777764

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=86.99  E-value=0.29  Score=35.01  Aligned_cols=100  Identities=10%  Similarity=-0.012  Sum_probs=55.4

Q ss_pred             CCCCCeEEEEccCChhHH-HHHHHHHHC-CCeEEEE-ecCCCCccc--ccCC-CceeEEEccCCCHhhHHHHhc--CccE
Q 028890           53 PPPSEKLLVLGGNGFVGS-HICREALDR-GLTVASL-SRSGRSSLR--DSWA-NNVIWHQGNLLSSDSWKEALD--GVTA  124 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~-~l~~~Ll~~-g~~V~~l-~r~~~~~~~--~~~~-~~~~~~~~D~~~~~~~~~~~~--~~d~  124 (202)
                      +.+.-+|.|.|+ |.+|+ +++..+... +.+|+++ +|+++....  .... +.....  .+.|   ++++++  ++|+
T Consensus        30 ~~~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~--~~~d---~~ell~~~~iD~  103 (221)
T d1h6da1          30 EDRRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIY--DYSN---FDKIAKDPKIDA  103 (221)
T ss_dssp             CCCCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEE--CSSS---GGGGGGCTTCCE
T ss_pred             CCCCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhcccccccc--ccCc---hhhhccccccee
Confidence            345568999997 99996 566666554 6688755 454332111  0000 111111  1223   344454  5888


Q ss_pred             eEEccccCCC-----------C----ccchhhhHHHHHHHHHHHHHcCC
Q 028890          125 VISCVGGFGS-----------N----SYMYKINGTANINAIRAASEKGV  158 (202)
Q Consensus       125 vi~~a~~~~~-----------~----~~~~~~n~~~~~~~~~~~~~~~~  158 (202)
                      |+-+......           .    +.-+..+......+++.+++.++
T Consensus       104 V~I~tp~~~H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~~  152 (221)
T d1h6da1         104 VYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAANK  152 (221)
T ss_dssp             EEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTC
T ss_pred             eeeccchhhhhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcCC
Confidence            8876653210           0    11234577778888999988875

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=86.96  E-value=0.32  Score=37.04  Aligned_cols=31  Identities=19%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      -++|+|+ |.-|..++..|.++|++|.++-+-
T Consensus         9 dvIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGS-GYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4889997 999999999999999999999864

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=86.92  E-value=0.72  Score=31.07  Aligned_cols=71  Identities=11%  Similarity=0.165  Sum_probs=39.2

Q ss_pred             CCCeEEEEccCChhHHHHH-HHHHHCC-CeEEEE-ecCCCCcc-cccCCCceeEEEccCCCHhhHHHH--hcCccEeEEc
Q 028890           55 PSEKLLVLGGNGFVGSHIC-REALDRG-LTVASL-SRSGRSSL-RDSWANNVIWHQGNLLSSDSWKEA--LDGVTAVISC  128 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~-~~Ll~~g-~~V~~l-~r~~~~~~-~~~~~~~~~~~~~D~~~~~~~~~~--~~~~d~vi~~  128 (202)
                      ++.++.|.| +|++|..+. +.|.... .+++++ +|+..... ......++.+..   .+.+++.+.  +.++|+||.+
T Consensus         3 kkirvaIIG-aG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~---~~~d~l~~~~~~~~iDiVf~A   78 (157)
T d1nvmb1           3 QKLKVAIIG-SGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTY---AGVEGLIKLPEFADIDFVFDA   78 (157)
T ss_dssp             SCEEEEEEC-CSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEES---SHHHHHHHSGGGGGEEEEEEC
T ss_pred             CCcEEEEEc-CcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccc---cceeeeeecccccccCEEEEc
Confidence            457999999 799998654 5554444 477776 45543211 111112333322   123444443  3468999886


Q ss_pred             c
Q 028890          129 V  129 (202)
Q Consensus       129 a  129 (202)
                      .
T Consensus        79 T   79 (157)
T d1nvmb1          79 T   79 (157)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.84  E-value=0.45  Score=32.90  Aligned_cols=67  Identities=21%  Similarity=0.231  Sum_probs=50.4

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCcccccCCCceeEEEccCCCHhhHHHHhcCccEeEEccc
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSSLRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                      ++++|.|.|= |.-|.+=+..|...|.+|++-.|............++++.        ++.++.++.|+|.....
T Consensus        15 k~k~IaViGY-GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~--------~~~eA~~~aDiim~L~P   81 (182)
T d1np3a2          15 QGKKVAIIGY-GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA--------DVKTAVAAADVVMILTP   81 (182)
T ss_dssp             HTSCEEEECC-SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE--------CHHHHHHTCSEEEECSC
T ss_pred             CCCEEEEEee-CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccc--------cHHHHhhhcCeeeeecc
Confidence            6789999997 9999999999999999999888876543333333455443        35677788888877764

>d3bswa1 b.81.1.8 (A:3-195) Acetyltransferase PglD {Campylobacter jejuni [TaxId: 197]}

class: All beta proteins
fold: Single-stranded left-handed beta-helix
superfamily: Trimeric LpxA-like enzymes
family: PglD-like
domain: Acetyltransferase PglD
species: Campylobacter jejuni [TaxId: 197]

Probab=86.81  E-value=0.8  Score=31.79  Aligned_cols=33  Identities=18%  Similarity=0.140  Sum_probs=25.8

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEec
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r   88 (202)
                      +.++++|.|| |+.|+.+.+.+...++++.++.-
T Consensus         1 k~kkl~i~Ga-gg~~~~v~di~~~~~~~~~~f~d   33 (193)
T d3bswa1           1 RTEKIYIYGA-SGHGLVCEDVAKNMGYKECIFLD   33 (193)
T ss_dssp             CCSEEEEEC---CHHHHHHHHHHHHTCCEEEECC
T ss_pred             CCCEEEEEcC-CHhHHHHHHHHHhCCCcEEEEEc
Confidence            3579999998 77899999999989998877653

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=86.81  E-value=2.1  Score=29.18  Aligned_cols=96  Identities=17%  Similarity=0.166  Sum_probs=53.3

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC---CeEEEEecCCCCcc-c---------ccC-------CCce------eEEEccCC
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG---LTVASLSRSGRSSL-R---------DSW-------ANNV------IWHQGNLL  110 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g---~~V~~l~r~~~~~~-~---------~~~-------~~~~------~~~~~D~~  110 (202)
                      +||.|-|= |-||+.+.+.++++.   .+|+++.-..+.+. .         -.+       ....      .+....-.
T Consensus         1 ikIgINGf-GRIGR~v~R~~~~~~~~~i~ivaINd~~~~~~~ayLlkyDSvhG~~~~~i~~~~~~~~~ing~~I~~~~~~   79 (172)
T d1rm4a1           1 LKVAINGF-GRIGRNFLRCWHGRKDSPLDVVVINDTGGVKQASHLLKYDSILGTFDADVKTAGDSAISVDGKVIKVVSDR   79 (172)
T ss_dssp             EEEEEECC-SHHHHHHHHHHHHCSSCSEEEEEEECTTCHHHHHHHHHCCTTTCSCSSCEEECTTSEEEETTEEEEEECCS
T ss_pred             CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEEcCCCCHHHHHHHHhcCcccccccceeEecCCcceEECCEEEEEecCC
Confidence            47888885 999999999998764   46666653221100 0         000       0111      11111224


Q ss_pred             CHhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEe
Q 028890          111 SSDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (202)
Q Consensus       111 ~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~S  165 (202)
                      +++++.-.-.++|+||=|.|.+...+.            ++.-.+.|++++|...
T Consensus        80 ~p~~i~W~~~gvDiViEcTG~f~~~~~------------~~~hl~~GakkViiSA  122 (172)
T d1rm4a1          80 NPVNLPWGDMGIDLVIEGTGVFVDRDG------------AGKHLQAGAKKVLITA  122 (172)
T ss_dssp             CGGGSCHHHHTCCEEEECSSSCCBHHH------------HHHHHHTTCSCEEESS
T ss_pred             ChHHCChhhcCCCEEEecCceEccHHH------------HHHHHhcCCceEEeec
Confidence            566654333479999999998643211            1222345888877643

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.58  E-value=0.26  Score=34.90  Aligned_cols=74  Identities=15%  Similarity=0.062  Sum_probs=48.9

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCC-------CeEEEEecCCCC------------ccc---------ccCCCceeEEEc
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRG-------LTVASLSRSGRS------------SLR---------DSWANNVIWHQG  107 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g-------~~V~~l~r~~~~------------~~~---------~~~~~~~~~~~~  107 (202)
                      +.+|+|+|| |--|.+.+.+|.++|       ++|++..+.+..            ...         .....++++...
T Consensus         2 p~~VaVIGa-GpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~   80 (239)
T d1lqta2           2 PYYIAIVGS-GPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGN   80 (239)
T ss_dssp             CEEEEEECC-SHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEES
T ss_pred             CcEEEEECc-CHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEE
Confidence            359999998 999999999999988       479999886522            000         111344555443


Q ss_pred             -cCCCHhhHHHHhcCccEeEEccc
Q 028890          108 -NLLSSDSWKEALDGVTAVISCVG  130 (202)
Q Consensus       108 -D~~~~~~~~~~~~~~d~vi~~a~  130 (202)
                       .+.....++++..+.|.++.+.|
T Consensus        81 ~~v~~~~~~~~~~~~~~~v~~atG  104 (239)
T d1lqta2          81 VVVGEHVQPGELSERYDAVIYAVG  104 (239)
T ss_dssp             CCBTTTBCHHHHHHHSSEEEECCC
T ss_pred             EEeccccchhhhhccccceeeecC
Confidence             33333445555567888888766

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=86.47  E-value=0.37  Score=36.07  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      -|+|+|+ |..|...+..|.++|++|.++.+.+.
T Consensus        25 DVvVIG~-G~aGl~aA~~la~~G~~V~llEk~~~   57 (322)
T d1d4ca2          25 DVVIIGS-GGAGLAAAVSARDAGAKVILLEKEPI   57 (322)
T ss_dssp             SEEEECS-SHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             eEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            4899998 99999999999999999999987653

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.23  E-value=0.92  Score=32.01  Aligned_cols=38  Identities=29%  Similarity=0.478  Sum_probs=31.5

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHH--------------------HCCC-eEEEEecCCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREAL--------------------DRGL-TVASLSRSGRS   92 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll--------------------~~g~-~V~~l~r~~~~   92 (202)
                      ..+++|+|+|+ |.++.-+++.|+                    +.|. +|+++.|+...
T Consensus        37 ~~gk~VvVIGg-GNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          37 LSGARAVVIGN-GNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCSSEEEEECC-SHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             ccCceEEEECC-CchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            46789999998 999999999887                    4565 89999988654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.98  E-value=0.41  Score=36.10  Aligned_cols=31  Identities=26%  Similarity=0.518  Sum_probs=28.1

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      -|+|.|+ |.-|..++.+|.++|++|.++-+-
T Consensus         6 DviIVGs-G~aG~v~A~~La~~G~kVlvLEaG   36 (379)
T d2f5va1           6 DVVIVGS-GPIGCTYARELVGAGYKVAMFDIG   36 (379)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEECc-CHHHHHHHHHHhhCCCeEEEEecC
Confidence            3789997 999999999999999999999764

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.90  E-value=0.89  Score=32.35  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=32.3

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHC--------------------C-CeEEEEecCCCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDR--------------------G-LTVASLSRSGRS   92 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~--------------------g-~~V~~l~r~~~~   92 (202)
                      ...+++|+|+|+ |.++.-+++.|++.                    | .+|+++.|+...
T Consensus        36 ~~~gk~VvVIGg-GNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~   95 (225)
T d1cjca1          36 DLSCDTAVILGQ-GNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPL   95 (225)
T ss_dssp             CTTSSEEEEESC-SHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGG
T ss_pred             cccCceEEEECC-chhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChH
Confidence            346889999998 99999999999883                    5 489999988654

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.85  E-value=0.71  Score=28.09  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=26.5

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCCCeEEEEec
Q 028890           57 EKLLVLGGNGFVGSHICREALDRGLTVASLSR   88 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r   88 (202)
                      |||||.|. |+=--+|+..|.+.++++++.--
T Consensus         1 MkVLviGs-GgREHAia~~l~~s~~~v~~~pG   31 (90)
T d1vkza2           1 VRVHILGS-GGREHAIGWAFAKQGYEVHFYPG   31 (90)
T ss_dssp             CEEEEEEC-SHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECC-CHHHHHHHHHHhcCCCeEEEecC
Confidence            69999997 77778899999999999998743

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=85.80  E-value=1.3  Score=30.28  Aligned_cols=75  Identities=19%  Similarity=0.202  Sum_probs=44.6

Q ss_pred             eEEEEccCChhHHHHHHHHHHCC-CeEEEEecCCCCcc----------cccCCCce------------eEEEccCCCHhh
Q 028890           58 KLLVLGGNGFVGSHICREALDRG-LTVASLSRSGRSSL----------RDSWANNV------------IWHQGNLLSSDS  114 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r~~~~~~----------~~~~~~~~------------~~~~~D~~~~~~  114 (202)
                      ||.|-|- |.||+.+.++++++. .+|.++.-..+.+.          ...+...+            .+..-.-.|+++
T Consensus         3 kIgINGf-GRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~hG~~~~~v~~~~~~l~i~g~~i~i~~~~~p~~   81 (171)
T d3cmco1           3 KVGINGF-GRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVHGRLDAEVSVNGNNLVVNGKEIIVKAERDPEN   81 (171)
T ss_dssp             EEEEESC-SHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEETTEEEEEECCSSGGG
T ss_pred             EEEEECC-CHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccCCcccccccccCCCEEeCCcceeeEecCCHHH
Confidence            6788885 999999999999884 57777763221100          00011111            111122345555


Q ss_pred             HHHHhcCccEeEEccccCC
Q 028890          115 WKEALDGVTAVISCVGGFG  133 (202)
Q Consensus       115 ~~~~~~~~d~vi~~a~~~~  133 (202)
                      +.---.++|+||=|.|.+.
T Consensus        82 i~W~~~~vDiViEcTG~f~  100 (171)
T d3cmco1          82 LAWGEIGVDIVVESTGRFT  100 (171)
T ss_dssp             CCTGGGTCCEEEECSSSCC
T ss_pred             ccccccCCcEEEEecCccC
Confidence            5433347999999999864

>d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Succinyl-CoA synthetase domains
family: Succinyl-CoA synthetase domains
domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.62  E-value=0.5  Score=31.79  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=28.9

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEe
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLS   87 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~   87 (202)
                      ++++++.|.+.+|+.|..++..+...|.++--+.
T Consensus         1 P~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l~   34 (163)
T d2csua3           1 PRGNKVAIMTNAGGPGVLTADELDKRGLKLATLE   34 (163)
T ss_dssp             CSSSEEEEEESCHHHHHHHHHHHHTTTCEECCCC
T ss_pred             CCCCeEEEEECChHHHHHHHHHHHHcCCccCCCC
Confidence            3678999999999999999999999998775443

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.60  E-value=0.3  Score=33.59  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=30.6

Q ss_pred             CCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           55 PSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        55 ~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      +.+.|+|+|| |..|..-+..|.+.|.+|+++.|..
T Consensus         4 k~~dVvIIGG-GpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGS-GPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECC-SHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECC-CHHHHHHHHHHHHcCCceEEEEeec
Confidence            4568999998 9999999999999999999998654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=85.35  E-value=0.45  Score=33.20  Aligned_cols=32  Identities=22%  Similarity=0.473  Sum_probs=28.9

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      =++|+|| |..|...+..+.+.|.+|.++.+.+
T Consensus         5 DvvVIGg-GpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           5 DVVIIGG-GPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             CEEEECC-SHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            3789998 9999999999999999999998754

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.25  E-value=2.3  Score=28.74  Aligned_cols=93  Identities=18%  Similarity=0.197  Sum_probs=54.6

Q ss_pred             eEEEEccCChhHHHHHHHHHHC-CCeEEEEecC-CCCc-cc---------ccCC--------------CceeEEEccCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDR-GLTVASLSRS-GRSS-LR---------DSWA--------------NNVIWHQGNLLS  111 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~-g~~V~~l~r~-~~~~-~~---------~~~~--------------~~~~~~~~D~~~  111 (202)
                      ||.|=|= |-||+.+.++++++ ..+|+++.-. .+.+ ..         -.+.              ..+.+.  .-.|
T Consensus         2 kigINGf-GRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~~~~I~i~--~~~~   78 (166)
T d2b4ro1           2 KLGINGF-GRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVHGQFPCEVTHADGFLLIGEKKVSVF--AEKD   78 (166)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTTCSCSSCEEEETTEEEESSCEEEEE--CCSS
T ss_pred             eEEEECC-CHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhcccccccceeeeccCCceEEecCcEEEEE--eCCC
Confidence            6777776 99999999999987 4687777632 2211 00         0011              112222  2245


Q ss_pred             HhhHHHHhcCccEeEEccccCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEe
Q 028890          112 SDSWKEALDGVTAVISCVGGFGSNSYMYKINGTANINAIRAASEKGVKRFVYIS  165 (202)
Q Consensus       112 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~S  165 (202)
                      ++.+.-.-.++|+|+=|.|.+...            ..++.-.+.|++++|...
T Consensus        79 p~~i~W~~~gvdiViEcTG~f~~~------------~~~~~hl~~gakkViiSA  120 (166)
T d2b4ro1          79 PSQIPWGKCQVDVVCESTGVFLTK------------ELASSHLKGGAKKVIMSA  120 (166)
T ss_dssp             GGGCCHHHHTCSEEEECSSSCCSH------------HHHTHHHHTTCSEEEESS
T ss_pred             hHHccccccCCCEEEEecccccch------------hhhhhhhccCCCEEEEec
Confidence            665544334899999999986432            112223356888877643

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.11  E-value=0.41  Score=33.92  Aligned_cols=76  Identities=14%  Similarity=0.098  Sum_probs=50.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc----ccccCCCceeEEEccCCCHhhHHHHhcCccEeEEcc
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS----LRDSWANNVIWHQGNLLSSDSWKEALDGVTAVISCV  129 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~----~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a  129 (202)
                      ..+.+|+=.|++.+.-...+..+...| +|++++.++...    .......++.++..|..+++.....+..+|+++|..
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g-~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v~~~~  133 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQDI  133 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTS-EEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEECC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCC-eEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEEEecc
Confidence            356789888875554333333344555 899999876431    111223689999999999887777777788888764


Q ss_pred             c
Q 028890          130 G  130 (202)
Q Consensus       130 ~  130 (202)
                      .
T Consensus       134 ~  134 (209)
T d1nt2a_         134 A  134 (209)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=85.09  E-value=0.68  Score=32.39  Aligned_cols=39  Identities=13%  Similarity=0.215  Sum_probs=34.0

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCC
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGRS   92 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~   92 (202)
                      ..++|+|+|.|+ |.-|-.++..+.+.+.+++.+.|+...
T Consensus        29 ~~~gK~V~VvG~-G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2          29 DFSGQRVGVIGT-GSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             CCBTCEEEEECC-SHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCCEEEEECC-CccHHHHHHHHHhhhccccccccccce
Confidence            458899999997 999999999999999999888887543

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=85.00  E-value=0.23  Score=33.10  Aligned_cols=32  Identities=28%  Similarity=0.104  Sum_probs=20.2

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      |-+.|+ |.+|+++++.|.+.++.+.+.+|++.
T Consensus         2 IgfIG~-G~mg~~l~~~L~~~~~~~~v~~R~~~   33 (153)
T d2i76a2           2 LNFVGT-GTLTRFFLECLKDRYEIGYILSRSID   33 (153)
T ss_dssp             CEEESC-CHHHHHHHHTTC----CCCEECSSHH
T ss_pred             EEEEeC-cHHHHHHHHHHHhCCCEEEEEeCChh
Confidence            346675 99999999987554443356677654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=84.38  E-value=0.41  Score=36.55  Aligned_cols=93  Identities=18%  Similarity=0.128  Sum_probs=58.0

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCCCc------ccccCCCceeEEEccCCCHh-hHHHHhcCccEeEEccc
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGRSS------LRDSWANNVIWHQGNLLSSD-SWKEALDGVTAVISCVG  130 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~------~~~~~~~~~~~~~~D~~~~~-~~~~~~~~~d~vi~~a~  130 (202)
                      .+=+.+|.|.+|..|+    +++.+|+++.-++...      .....-.+++++.+|+.+.- ........+|+||-...
T Consensus       216 vlDLycG~G~fsl~La----~~~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~~~~~d~vilDPP  291 (358)
T d1uwva2         216 VLDLFCGMGNFTLPLA----TQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDPA  291 (358)
T ss_dssp             EEEESCTTTTTHHHHH----TTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEECCC
T ss_pred             EEEecccccccchhcc----ccccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhhhccCceEEeCCC
Confidence            4457789999998765    4678999998765331      11222357899999876532 12222345788876653


Q ss_pred             cCCCCccchhhhHHHHHHHHHHHHHcCCCEEEEEec
Q 028890          131 GFGSNSYMYKINGTANINAIRAASEKGVKRFVYISA  166 (202)
Q Consensus       131 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~SS  166 (202)
                      -.+     .       ..+++...+.+++++||+|=
T Consensus       292 R~G-----~-------~~~~~~l~~~~~~~ivYVSC  315 (358)
T d1uwva2         292 RAG-----A-------AGVMQQIIKLEPIRIVYVSC  315 (358)
T ss_dssp             TTC-----C-------HHHHHHHHHHCCSEEEEEES
T ss_pred             Ccc-----H-------HHHHHHHHHcCCCEEEEEeC
Confidence            322     1       12345555667899999995

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.31  E-value=0.71  Score=33.31  Aligned_cols=35  Identities=26%  Similarity=0.262  Sum_probs=29.4

Q ss_pred             CCCCCeEEEEccCChhHHHHHHHHHH-CCCeEEEEec
Q 028890           53 PPPSEKLLVLGGNGFVGSHICREALD-RGLTVASLSR   88 (202)
Q Consensus        53 ~~~~~~vlVtGa~G~iG~~l~~~Ll~-~g~~V~~l~r   88 (202)
                      ..++++|+|-|- |.+|+++++.|.+ .|.+|+.++-
T Consensus        28 ~l~g~~vaIqG~-GnVG~~~a~~L~~e~Ga~vv~vsd   63 (234)
T d1b26a1          28 DPKKATVAVQGF-GNVGQFAALLISQELGSKVVAVSD   63 (234)
T ss_dssp             CTTTCEEEEECC-SHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred             CcCCCEEEEECC-CHHHHHHHHHHHHhcCCceEEeec
Confidence            457889999985 9999999999975 5999987763

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.06  E-value=0.3  Score=32.67  Aligned_cols=30  Identities=20%  Similarity=0.320  Sum_probs=26.2

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEE
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVA   84 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~   84 (202)
                      ..+++|+|.|| |++|..++..+.+.|.++.
T Consensus        27 ~~gkrVvVIGg-G~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          27 PVGNKVAIIGC-GGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             CCCSEEEEECC-HHHHHHHHHHHTCCSSCGG
T ss_pred             ccCCceEEEcC-chhHHHHHHHHHHcCCccc
Confidence            45789999998 9999999999999997543

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=83.61  E-value=0.49  Score=35.33  Aligned_cols=32  Identities=25%  Similarity=0.384  Sum_probs=29.3

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      -|+|+|+ |..|...+.++.++|.+|.++.+.+
T Consensus        21 DVvVIGa-G~aGl~AA~~aa~~G~~V~vlEK~~   52 (317)
T d1qo8a2          21 QVLVVGA-GSAGFNASLAAKKAGANVILVDKAP   52 (317)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHHTCCEEEECSSS
T ss_pred             CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            5999998 9999999999999999999998764

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=83.08  E-value=0.63  Score=31.98  Aligned_cols=34  Identities=15%  Similarity=0.084  Sum_probs=30.0

Q ss_pred             CCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           56 SEKLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      .++|+|.|| |..|...+-.|.+.|.+|+++.+..
T Consensus         5 ~~~VvIIGg-GpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           5 NTRLCIVGS-GPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEECC-SHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cceEEEECC-CHHHHHHHHHHHHcCCcEEEEEeec
Confidence            468999998 9999999999999999999998654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=83.02  E-value=0.72  Score=31.08  Aligned_cols=32  Identities=16%  Similarity=0.321  Sum_probs=28.3

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      -|+|.|| |..|...+-.+.+.|.+|.++.++.
T Consensus         3 DViIIGg-GpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGS-GPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECC-SHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECc-CHHHHHHHHHHHHcCCeEEEEEEec
Confidence            3789998 9999999999999999999998753

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.64  E-value=0.91  Score=31.69  Aligned_cols=32  Identities=25%  Similarity=0.521  Sum_probs=28.9

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      -|+|+|| |--|...+..+.+.|.+|.++.+.+
T Consensus         7 DviVIG~-GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGG-GPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECC-SHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEEecC
Confidence            3899998 9999999999999999999998754

>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Glycosyl transferases group 1
domain: Glycogen synthase 1, GlgA
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=82.55  E-value=0.74  Score=36.25  Aligned_cols=23  Identities=13%  Similarity=0.128  Sum_probs=19.0

Q ss_pred             CChhH---HHHHHHHHHCCCeEEEEe
Q 028890           65 NGFVG---SHICREALDRGLTVASLS   87 (202)
Q Consensus        65 ~G~iG---~~l~~~Ll~~g~~V~~l~   87 (202)
                      +|++|   .+|+++|.++||+|.++.
T Consensus        16 ~GGl~~vv~~La~~L~~~Gh~V~Vi~   41 (477)
T d1rzua_          16 TGGLADVVGALPIALEAHGVRTRTLI   41 (477)
T ss_dssp             SSHHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             cCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence            47777   567999999999999884

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=82.37  E-value=0.74  Score=30.65  Aligned_cols=32  Identities=22%  Similarity=0.212  Sum_probs=26.3

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ||.+.|- |.+|..+++.|++.|+.+ ..+|..+
T Consensus         2 kIg~IGl-G~MG~~ma~~L~~~g~~~-~~~~~~~   33 (156)
T d2cvza2           2 KVAFIGL-GAMGYPMAGHLARRFPTL-VWNRTFE   33 (156)
T ss_dssp             CEEEECC-STTHHHHHHHHHTTSCEE-EECSSTH
T ss_pred             eEEEEeH-HHHHHHHHHHHHhCCCEE-EEeCCHH
Confidence            6889996 999999999999989866 4566554

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=81.34  E-value=1.3  Score=28.48  Aligned_cols=37  Identities=19%  Similarity=0.179  Sum_probs=32.3

Q ss_pred             CCCCeEEEEccCChhHHHHHHHHHHCCCeEEEEecCCC
Q 028890           54 PPSEKLLVLGGNGFVGSHICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        54 ~~~~~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      .++++|+|.|+ |..+-.-+..|.+-..+|+++.|.+.
T Consensus        25 ~~~k~V~VvGg-GdsA~e~A~~L~~~a~~V~li~r~~~   61 (126)
T d1trba2          25 YRNQKVAVIGG-GNTAVEEALYLSNIASEVHLIHRRDG   61 (126)
T ss_dssp             GTTSEEEEECS-SHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hCCCEEEEECC-CHHHHHHHHHHhhcCCcEEEEeeccc
Confidence            37889999998 88888899999888889999998764

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=81.32  E-value=1.5  Score=29.79  Aligned_cols=97  Identities=10%  Similarity=-0.013  Sum_probs=52.9

Q ss_pred             CCeEEEEccCChhHHH-HHHHHHHCC--CeEEEEe-cCCCCcccccCCCceeEEEccCCCHhhHHHHhc--CccEeEEcc
Q 028890           56 SEKLLVLGGNGFVGSH-ICREALDRG--LTVASLS-RSGRSSLRDSWANNVIWHQGNLLSSDSWKEALD--GVTAVISCV  129 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~-l~~~Ll~~g--~~V~~l~-r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~--~~d~vi~~a  129 (202)
                      +.++.|.|. |.+|+. .++.+.+.+  .+++++. +++.........-+...+.   .|   ++++++  ++|+|+-+.
T Consensus         3 kirigiIG~-G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~---~~---~~ell~~~~id~v~I~t   75 (181)
T d1zh8a1           3 KIRLGIVGC-GIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVF---DS---YEELLESGLVDAVDLTL   75 (181)
T ss_dssp             CEEEEEECC-SHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEE---SC---HHHHHHSSCCSEEEECC
T ss_pred             CcEEEEEcC-CHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhcccccccee---ee---eeccccccccceeeccc
Confidence            458999996 999986 466676543  4777654 4432211100000111111   23   445554  589888766


Q ss_pred             ccCCC---------------CccchhhhHHHHHHHHHHHHHcCCC
Q 028890          130 GGFGS---------------NSYMYKINGTANINAIRAASEKGVK  159 (202)
Q Consensus       130 ~~~~~---------------~~~~~~~n~~~~~~~~~~~~~~~~~  159 (202)
                      .....               -+.-...+......+++.+++.+..
T Consensus        76 p~~~h~~~~~~al~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~~  120 (181)
T d1zh8a1          76 PVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKT  120 (181)
T ss_dssp             CGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred             cccccccccccccccchhhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence            53210               0122245677777888888888753

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=81.16  E-value=0.9  Score=33.11  Aligned_cols=36  Identities=22%  Similarity=0.251  Sum_probs=27.6

Q ss_pred             CCeEEEEccCChhHHH-----HHHHHHHCCCeEEEEecCCC
Q 028890           56 SEKLLVLGGNGFVGSH-----ICREALDRGLTVASLSRSGR   91 (202)
Q Consensus        56 ~~~vlVtGa~G~iG~~-----l~~~Ll~~g~~V~~l~r~~~   91 (202)
                      ++++++.-|-|++|+-     ++..|.++|++|.+++-++.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp~   47 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDPA   47 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3455555557999984     77888899999999998754

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=80.67  E-value=2.8  Score=28.43  Aligned_cols=31  Identities=26%  Similarity=0.445  Sum_probs=25.6

Q ss_pred             CeEEEEccCChhHHHHHHHHHHCC-CeEEEEec
Q 028890           57 EKLLVLGGNGFVGSHICREALDRG-LTVASLSR   88 (202)
Q Consensus        57 ~~vlVtGa~G~iG~~l~~~Ll~~g-~~V~~l~r   88 (202)
                      -||.|=|- |-||+.+.+++++++ .+|+++.-
T Consensus         2 ikIgINGF-GRIGR~v~R~~~~~~~~~ivaINd   33 (169)
T d1u8fo1           2 VKVGVNGF-GRIGRLVTRAAFNSGKVDIVAIND   33 (169)
T ss_dssp             CEEEEECC-SHHHHHHHHHHHHHCSSEEEEEEC
T ss_pred             cEEEEECC-cHHHHHHHHHHHHCCCcEEEEecC
Confidence            47888885 999999999999774 68877764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=80.60  E-value=0.91  Score=33.77  Aligned_cols=31  Identities=32%  Similarity=0.499  Sum_probs=28.3

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      |+|+|+ |.-|...+-.+.++|.+|.++.+.+
T Consensus         8 VvVIG~-G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           8 SLVIGG-GLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             EEEECC-SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             EEEECc-CHHHHHHHHHHHHCCCCEEEEecCC
Confidence            899997 9999999999999999999998754

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.53  E-value=1.2  Score=30.87  Aligned_cols=31  Identities=32%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             EEEEccCChhHHHHHHHHHHCCCeEEEEecCC
Q 028890           59 LLVLGGNGFVGSHICREALDRGLTVASLSRSG   90 (202)
Q Consensus        59 vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~~   90 (202)
                      ++|.|| |..|...+..+.+.|.+|.++.+..
T Consensus         6 viIIG~-GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           6 YLVIGG-GSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             EEEECC-SHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             EEEECC-CHHHHHHHHHHHHCCCEEEEEeccC
Confidence            788887 9999999999999999999998653

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=80.17  E-value=1.5  Score=30.24  Aligned_cols=69  Identities=20%  Similarity=0.198  Sum_probs=45.9

Q ss_pred             cCChhHHHHHHHHHHCCCeEEEEecCCCCc--ccccCCCceeEEEccCCCHhhHHHHh--cCccEeEEccccCC
Q 028890           64 GNGFVGSHICREALDRGLTVASLSRSGRSS--LRDSWANNVIWHQGNLLSSDSWKEAL--DGVTAVISCVGGFG  133 (202)
Q Consensus        64 a~G~iG~~l~~~Ll~~g~~V~~l~r~~~~~--~~~~~~~~~~~~~~D~~~~~~~~~~~--~~~d~vi~~a~~~~  133 (202)
                      +|=+-|.| .+.+++++.+|++++|++...  .......++.++..+..+.+.+....  ..+|.|+.-.|...
T Consensus        25 ~T~G~GGh-s~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs   97 (182)
T d1wg8a2          25 ATLGGAGH-ARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSS   97 (182)
T ss_dssp             TTCTTSHH-HHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCH
T ss_pred             eCCCCcHH-HHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCH
Confidence            33444445 455666777999999987541  11223568999999988766554433  46899999888753

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=80.03  E-value=0.88  Score=31.75  Aligned_cols=31  Identities=26%  Similarity=0.351  Sum_probs=28.4

Q ss_pred             eEEEEccCChhHHHHHHHHHHCCCeEEEEecC
Q 028890           58 KLLVLGGNGFVGSHICREALDRGLTVASLSRS   89 (202)
Q Consensus        58 ~vlVtGa~G~iG~~l~~~Ll~~g~~V~~l~r~   89 (202)
                      .++|+|| |-.|...+..+.+.|.+|.++.+.
T Consensus         7 DlvVIG~-GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGG-GPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECC-SHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CEEEECC-CHHHHHHHHHHHHCCCcEEEEecC
Confidence            5899997 999999999999999999999865