Query 028891
Match_columns 202
No_of_seqs 243 out of 1138
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 04:09:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0812 SNARE protein SED5/Syn 100.0 4.5E-43 9.8E-48 302.9 18.9 179 1-202 133-311 (311)
2 KOG0809 SNARE protein TLG2/Syn 99.9 2.2E-21 4.7E-26 169.0 10.6 102 100-201 200-301 (305)
3 KOG0810 SNARE protein Syntaxin 99.8 4.1E-21 8.8E-26 169.6 11.1 75 109-183 197-271 (297)
4 KOG0811 SNARE protein PEP12/VA 99.8 1.3E-20 2.9E-25 164.1 13.7 93 106-198 168-262 (269)
5 COG5325 t-SNARE complex subuni 99.8 1.2E-18 2.6E-23 150.8 13.0 91 107-197 184-274 (283)
6 COG5074 t-SNARE complex subuni 99.7 3.8E-16 8.1E-21 132.8 10.1 89 110-198 177-268 (280)
7 PF05739 SNARE: SNARE domain; 99.6 5.4E-14 1.2E-18 96.6 10.4 63 115-177 1-63 (63)
8 cd00193 t_SNARE Soluble NSF (N 99.4 1.1E-12 2.4E-17 88.1 7.9 59 114-172 2-60 (60)
9 smart00397 t_SNARE Helical reg 99.4 6.5E-12 1.4E-16 85.6 9.3 64 109-172 3-66 (66)
10 KOG3202 SNARE protein TLG1/Syn 99.1 3.8E-09 8.3E-14 90.8 13.4 75 109-183 143-217 (235)
11 KOG3894 SNARE protein Syntaxin 98.9 2.2E-08 4.8E-13 88.7 12.4 88 112-200 226-313 (316)
12 KOG3385 V-SNARE [Intracellular 98.5 1.1E-06 2.3E-11 67.8 9.4 83 114-198 32-115 (118)
13 PF00957 Synaptobrevin: Synapt 98.0 0.00027 5.8E-09 51.6 12.5 59 118-176 3-61 (89)
14 KOG0811 SNARE protein PEP12/VA 97.6 0.0026 5.7E-08 56.0 14.5 98 101-200 170-267 (269)
15 KOG0860 Synaptobrevin/VAMP-lik 97.6 0.0018 4E-08 50.2 11.6 52 118-173 29-80 (116)
16 PF09753 Use1: Membrane fusion 97.5 0.003 6.5E-08 54.6 13.5 71 128-200 177-247 (251)
17 KOG0810 SNARE protein Syntaxin 97.4 0.0021 4.6E-08 57.3 10.9 87 110-200 205-291 (297)
18 COG5325 t-SNARE complex subuni 97.1 0.019 4.1E-07 50.6 13.2 93 102-198 186-278 (283)
19 KOG1666 V-SNARE [Intracellular 96.9 0.028 6E-07 48.0 12.7 84 117-201 134-217 (220)
20 COG5074 t-SNARE complex subuni 96.4 0.044 9.6E-07 47.5 10.4 82 113-195 187-268 (280)
21 KOG3065 SNAP-25 (synaptosome-a 96.1 0.03 6.5E-07 49.5 8.3 57 115-171 215-271 (273)
22 PF03908 Sec20: Sec20; InterP 96.0 0.29 6.4E-06 35.9 12.0 50 137-186 27-76 (92)
23 KOG2678 Predicted membrane pro 95.0 0.68 1.5E-05 39.9 12.2 60 116-178 156-215 (244)
24 PF12352 V-SNARE_C: Snare regi 94.6 0.94 2E-05 30.9 10.2 58 118-175 8-65 (66)
25 PF00957 Synaptobrevin: Synapt 94.0 1.6 3.5E-05 31.5 11.8 14 114-127 27-40 (89)
26 KOG0809 SNARE protein TLG2/Syn 93.1 1.3 2.9E-05 39.6 10.5 87 106-196 213-299 (305)
27 PF05478 Prominin: Prominin; 93.0 1.4 3E-05 44.3 12.0 65 119-189 358-422 (806)
28 PF03904 DUF334: Domain of unk 92.0 6.8 0.00015 33.9 13.2 32 110-141 63-94 (230)
29 PF09753 Use1: Membrane fusion 91.8 2.8 6E-05 36.2 10.9 57 145-201 187-245 (251)
30 PF09889 DUF2116: Uncharacteri 91.3 0.31 6.7E-06 33.5 3.5 14 185-198 41-54 (59)
31 KOG3202 SNARE protein TLG1/Syn 91.2 5.1 0.00011 34.8 11.8 68 100-167 141-208 (235)
32 KOG3208 SNARE protein GS28 [In 90.3 5.2 0.00011 34.5 10.9 73 124-197 155-228 (231)
33 KOG0859 Synaptobrevin/VAMP-lik 90.0 1.1 2.4E-05 38.0 6.4 35 117-151 124-158 (217)
34 KOG0812 SNARE protein SED5/Syn 89.5 10 0.00022 34.1 12.3 93 109-201 211-307 (311)
35 PF09889 DUF2116: Uncharacteri 88.5 0.95 2.1E-05 31.1 4.2 35 166-200 25-59 (59)
36 PF10779 XhlA: Haemolysin XhlA 88.1 7 0.00015 27.3 9.7 51 144-198 18-69 (71)
37 KOG3251 Golgi SNAP receptor co 86.7 11 0.00024 32.3 10.5 65 119-183 130-194 (213)
38 PF14992 TMCO5: TMCO5 family 86.4 18 0.00039 32.2 12.0 55 111-165 123-177 (280)
39 KOG0860 Synaptobrevin/VAMP-lik 85.9 15 0.00031 28.7 10.5 23 109-131 48-70 (116)
40 KOG3850 Predicted membrane pro 79.4 52 0.0011 30.8 12.4 46 121-166 309-355 (455)
41 KOG2678 Predicted membrane pro 76.4 49 0.0011 28.7 10.7 41 146-186 176-220 (244)
42 PF04102 SlyX: SlyX; InterPro 75.7 23 0.00049 24.6 7.2 49 118-166 4-52 (69)
43 KOG3065 SNAP-25 (synaptosome-a 74.8 24 0.00051 31.3 8.7 46 128-173 89-134 (273)
44 PF04906 Tweety: Tweety; Inte 73.3 12 0.00026 34.8 6.9 23 177-199 182-204 (406)
45 PHA02844 putative transmembran 71.8 4.4 9.5E-05 29.1 2.7 9 179-187 46-54 (75)
46 PF01519 DUF16: Protein of unk 71.8 42 0.00091 25.6 9.2 49 115-163 50-98 (102)
47 cd00193 t_SNARE Soluble NSF (N 70.7 25 0.00053 22.4 8.3 55 122-176 3-57 (60)
48 PF02346 Vac_Fusion: Chordopox 70.7 29 0.00062 23.7 6.5 46 119-164 2-47 (57)
49 KOG3894 SNARE protein Syntaxin 69.4 89 0.0019 28.4 11.4 79 123-201 227-311 (316)
50 KOG0862 Synaptobrevin/VAMP-lik 68.2 49 0.0011 28.4 8.8 33 120-152 136-168 (216)
51 PF00523 Fusion_gly: Fusion gl 67.8 9 0.0002 36.7 4.8 15 155-169 447-461 (490)
52 PF11166 DUF2951: Protein of u 67.2 52 0.0011 24.8 11.4 45 116-160 9-53 (98)
53 PHA03054 IMV membrane protein; 66.3 6.7 0.00015 27.9 2.7 7 179-185 46-52 (72)
54 PF07889 DUF1664: Protein of u 65.9 32 0.00068 27.1 6.8 49 119-167 69-117 (126)
55 PHA02975 hypothetical protein; 65.9 8.5 0.00018 27.2 3.2 10 178-187 41-50 (69)
56 PHA02819 hypothetical protein; 65.6 6.9 0.00015 27.8 2.7 8 179-186 44-51 (71)
57 PF05366 Sarcolipin: Sarcolipi 64.9 9.6 0.00021 22.5 2.7 23 178-200 4-26 (31)
58 PF06143 Baculo_11_kDa: Baculo 64.6 13 0.00028 27.4 4.0 7 167-173 20-26 (84)
59 PF05546 She9_MDM33: She9 / Md 61.8 83 0.0018 26.9 9.0 52 150-201 110-173 (207)
60 PRK00295 hypothetical protein; 61.1 53 0.0012 22.8 7.9 45 120-164 7-51 (68)
61 PF05957 DUF883: Bacterial pro 61.0 60 0.0013 23.5 11.6 63 122-184 6-77 (94)
62 cd07912 Tweety_N N-terminal do 60.5 98 0.0021 29.1 10.1 6 178-183 206-211 (418)
63 PHA02692 hypothetical protein; 60.4 11 0.00024 26.8 2.9 9 178-186 42-50 (70)
64 PRK00736 hypothetical protein; 59.8 56 0.0012 22.7 7.8 45 120-164 7-51 (68)
65 PHA02675 ORF104 fusion protein 59.6 69 0.0015 23.6 7.5 37 127-163 39-75 (90)
66 PF05377 FlaC_arch: Flagella a 59.4 51 0.0011 22.3 5.9 34 122-155 4-37 (55)
67 PRK02793 phi X174 lysis protei 59.2 60 0.0013 22.8 7.8 47 118-164 8-54 (72)
68 PRK04325 hypothetical protein; 58.9 62 0.0013 22.9 7.8 45 120-164 11-55 (74)
69 PRK14710 hypothetical protein; 57.1 13 0.00028 26.7 2.8 21 180-200 9-29 (86)
70 PHA02414 hypothetical protein 56.4 87 0.0019 23.8 7.8 45 119-163 30-74 (111)
71 PF05478 Prominin: Prominin; 55.8 2E+02 0.0042 29.2 12.0 23 178-200 408-430 (806)
72 PRK09793 methyl-accepting prot 55.8 1.6E+02 0.0034 27.9 10.9 57 109-165 427-483 (533)
73 smart00502 BBC B-Box C-termina 55.7 77 0.0017 23.0 8.7 55 122-176 36-91 (127)
74 KOG0859 Synaptobrevin/VAMP-lik 55.3 48 0.001 28.3 6.5 13 144-156 138-150 (217)
75 PRK15041 methyl-accepting chem 54.8 1.6E+02 0.0034 28.1 10.8 57 108-164 430-486 (554)
76 PF00015 MCPsignal: Methyl-acc 54.0 1.1E+02 0.0024 24.4 11.2 63 109-171 126-188 (213)
77 COG4942 Membrane-bound metallo 53.9 1.5E+02 0.0032 28.0 10.1 58 114-171 41-98 (420)
78 PRK02119 hypothetical protein; 53.7 77 0.0017 22.4 8.0 48 117-164 8-55 (73)
79 PRK11637 AmiB activator; Provi 53.6 1.9E+02 0.004 26.8 12.3 65 111-175 68-132 (428)
80 PRK15048 methyl-accepting chem 52.7 2E+02 0.0044 27.1 11.1 55 109-163 429-483 (553)
81 PRK10299 PhoPQ regulatory prot 52.0 19 0.00042 23.6 2.8 17 177-193 2-18 (47)
82 PF12911 OppC_N: N-terminal TM 52.0 34 0.00073 22.1 4.2 15 169-183 5-19 (56)
83 COG4068 Uncharacterized protei 51.5 16 0.00036 25.2 2.5 12 181-192 42-53 (64)
84 PF11026 DUF2721: Protein of u 50.5 1E+02 0.0023 23.9 7.4 16 166-181 49-64 (130)
85 PF05961 Chordopox_A13L: Chord 50.4 22 0.00047 25.1 3.1 18 183-200 6-23 (68)
86 PF06422 PDR_CDR: CDR ABC tran 50.0 20 0.00044 26.8 3.1 20 164-183 32-51 (103)
87 PLN03160 uncharacterized prote 49.8 11 0.00023 32.2 1.8 9 178-186 36-44 (219)
88 COG1459 PulF Type II secretory 48.9 63 0.0014 30.1 6.8 31 133-163 120-150 (397)
89 KOG2546 Abl interactor ABI-1, 48.7 80 0.0017 30.0 7.4 56 108-163 45-100 (483)
90 PRK14762 membrane protein; Pro 48.5 31 0.00066 19.8 2.9 8 181-188 6-13 (27)
91 COG3736 VirB8 Type IV secretor 48.4 41 0.00089 29.3 5.2 40 160-199 21-62 (239)
92 PHA02650 hypothetical protein; 48.2 25 0.00053 25.6 3.1 22 179-200 44-65 (81)
93 PF01601 Corona_S2: Coronaviru 47.9 6.8 0.00015 38.3 0.3 12 169-180 537-548 (610)
94 PF11395 DUF2873: Protein of u 47.8 30 0.00065 21.8 3.1 13 185-197 17-29 (43)
95 PHA03049 IMV membrane protein; 47.6 26 0.00055 24.7 3.1 17 183-199 6-22 (68)
96 PRK11637 AmiB activator; Provi 46.8 2.4E+02 0.0052 26.0 12.5 70 109-178 59-128 (428)
97 PF08372 PRT_C: Plant phosphor 46.8 1.6E+02 0.0034 24.0 8.1 21 109-129 53-73 (156)
98 PF04210 MtrG: Tetrahydrometha 46.6 1E+02 0.0023 21.9 7.2 18 153-170 19-36 (70)
99 PF12575 DUF3753: Protein of u 46.1 16 0.00035 26.1 1.9 18 181-198 45-62 (72)
100 PF01102 Glycophorin_A: Glycop 43.8 28 0.00062 27.2 3.2 7 183-189 67-73 (122)
101 PF11945 WASH_WAHD: WAHD domai 43.8 1.6E+02 0.0035 26.4 8.4 61 110-174 17-77 (297)
102 PF05008 V-SNARE: Vesicle tran 43.5 1.1E+02 0.0023 21.1 8.1 29 114-142 21-49 (79)
103 KOG4433 Tweety transmembrane/c 43.5 1.7E+02 0.0036 28.4 8.7 44 147-190 167-219 (526)
104 smart00397 t_SNARE Helical reg 43.4 87 0.0019 20.1 9.6 55 120-174 7-61 (66)
105 PRK00846 hypothetical protein; 42.8 1.3E+02 0.0027 21.7 7.9 47 119-165 14-60 (77)
106 PF15102 TMEM154: TMEM154 prot 42.6 12 0.00026 30.2 1.0 20 182-201 59-78 (146)
107 PF04272 Phospholamban: Phosph 42.1 41 0.0009 22.0 3.2 14 186-199 35-48 (52)
108 PRK04406 hypothetical protein; 42.1 1.2E+02 0.0027 21.5 8.4 46 118-163 11-56 (75)
109 PF10267 Tmemb_cc2: Predicted 41.7 3E+02 0.0065 25.8 13.8 24 143-166 295-318 (395)
110 PHA03054 IMV membrane protein; 41.7 37 0.00079 24.2 3.2 22 179-200 43-64 (72)
111 PHA03164 hypothetical protein; 41.6 41 0.0009 24.4 3.5 9 191-199 70-78 (88)
112 TIGR02833 spore_III_AB stage I 41.6 1E+02 0.0022 25.1 6.3 14 127-140 107-120 (170)
113 PRK08307 stage III sporulation 40.6 1.1E+02 0.0024 24.9 6.4 16 167-182 139-154 (171)
114 PHA02819 hypothetical protein; 40.2 41 0.00088 24.0 3.2 21 180-200 42-62 (71)
115 KOG0570 Transcriptional coacti 40.0 2.3E+02 0.0051 24.3 8.2 55 122-176 103-170 (223)
116 PF03904 DUF334: Domain of unk 39.9 2.5E+02 0.0055 24.4 11.5 46 154-199 121-166 (230)
117 PRK10573 type IV pilin biogene 39.8 1.2E+02 0.0027 27.5 7.2 16 144-159 132-147 (399)
118 PHA03240 envelope glycoprotein 39.5 29 0.00064 30.0 2.9 18 179-196 210-227 (258)
119 PF07432 Hc1: Histone H1-like 39.3 1.6E+02 0.0036 23.0 6.7 46 130-175 2-47 (123)
120 PHA02844 putative transmembran 38.9 43 0.00093 24.1 3.2 20 181-200 45-64 (75)
121 PF04505 Dispanin: Interferon- 38.6 24 0.00052 25.4 1.9 18 166-183 50-67 (82)
122 PF15188 CCDC-167: Coiled-coil 38.6 1.6E+02 0.0034 21.7 9.3 22 107-128 8-29 (85)
123 PF01519 DUF16: Protein of unk 38.3 1.8E+02 0.0039 22.2 8.4 49 115-163 34-84 (102)
124 PF06198 DUF999: Protein of un 38.2 16 0.00035 28.4 1.0 19 177-195 83-101 (143)
125 PRK08307 stage III sporulation 37.9 1.9E+02 0.0041 23.5 7.4 26 127-152 108-134 (171)
126 COG4499 Predicted membrane pro 37.8 45 0.00098 31.3 4.0 19 171-189 207-225 (434)
127 PF04728 LPP: Lipoprotein leuc 37.7 1.3E+02 0.0028 20.4 7.0 43 119-175 4-46 (56)
128 PF07798 DUF1640: Protein of u 37.6 2.2E+02 0.0048 23.0 13.1 43 147-189 121-165 (177)
129 PHA03164 hypothetical protein; 37.5 29 0.00063 25.2 2.1 16 185-200 61-76 (88)
130 TIGR02833 spore_III_AB stage I 37.4 2.1E+02 0.0046 23.2 7.6 23 161-183 132-154 (170)
131 COG4238 Murein lipoprotein [Ce 37.3 1.3E+02 0.0029 21.7 5.5 32 145-176 38-69 (78)
132 PF13314 DUF4083: Domain of un 37.0 50 0.0011 22.6 3.1 15 186-200 12-26 (58)
133 PF00429 TLV_coat: ENV polypro 37.0 1.8E+02 0.0038 28.4 8.1 38 112-149 429-466 (561)
134 PHA02689 ORF051 putative membr 36.1 45 0.00098 26.3 3.2 23 178-200 27-49 (128)
135 PF13800 Sigma_reg_N: Sigma fa 36.0 44 0.00096 24.3 3.1 7 169-175 5-11 (96)
136 COG5346 Predicted membrane pro 35.8 2.2E+02 0.0047 22.6 6.9 9 185-193 95-103 (136)
137 PRK10381 LPS O-antigen length 35.2 47 0.001 30.6 3.7 32 169-200 29-60 (377)
138 PF15183 MRAP: Melanocortin-2 34.9 37 0.00079 25.1 2.4 11 177-187 32-42 (90)
139 PF03310 Cauli_DNA-bind: Cauli 34.4 2.3E+02 0.0049 22.3 7.0 9 167-175 61-69 (121)
140 PHA02967 hypothetical protein; 33.9 49 0.0011 26.1 3.1 23 178-200 24-46 (128)
141 PF13253 DUF4044: Protein of u 33.7 35 0.00075 21.0 1.8 18 183-200 12-29 (35)
142 PRK04406 hypothetical protein; 33.7 1.7E+02 0.0038 20.7 8.1 51 124-174 3-53 (75)
143 PF06072 Herpes_US9: Alphaherp 33.5 1.2E+02 0.0025 21.0 4.5 12 164-175 10-21 (60)
144 KOG1693 emp24/gp25L/p24 family 33.3 2.3E+02 0.005 24.2 7.2 18 114-131 127-144 (209)
145 PRK10856 cytoskeletal protein 33.2 41 0.0009 30.4 3.0 22 174-195 105-126 (331)
146 PF09577 Spore_YpjB: Sporulati 33.0 1.5E+02 0.0033 25.6 6.3 14 185-198 204-217 (232)
147 COG2966 Uncharacterized conser 32.8 72 0.0016 27.8 4.3 40 150-189 94-134 (250)
148 PF06072 Herpes_US9: Alphaherp 32.8 96 0.0021 21.4 4.0 6 177-182 28-33 (60)
149 PF05739 SNARE: SNARE domain; 32.7 1.4E+02 0.0031 19.4 10.1 53 114-166 7-59 (63)
150 PRK10884 SH3 domain-containing 32.7 3.1E+02 0.0066 23.2 12.3 40 132-171 118-157 (206)
151 PF11190 DUF2976: Protein of u 32.3 1.1E+02 0.0024 22.5 4.6 41 158-198 36-80 (87)
152 PF09548 Spore_III_AB: Stage I 32.3 1.8E+02 0.0038 23.5 6.3 11 127-137 107-117 (170)
153 TIGR01294 P_lamban phospholamb 32.0 72 0.0016 20.9 3.1 7 190-196 39-45 (52)
154 TIGR01149 mtrG N5-methyltetrah 32.0 1.9E+02 0.0041 20.6 7.3 12 158-169 24-35 (70)
155 PF10280 Med11: Mediator compl 31.5 2.3E+02 0.0051 21.5 9.5 63 114-176 2-71 (117)
156 PF07127 Nodulin_late: Late no 31.2 44 0.00095 22.0 2.1 16 184-199 5-20 (54)
157 PF09548 Spore_III_AB: Stage I 31.2 1.6E+02 0.0034 23.8 5.8 13 168-180 139-151 (170)
158 TIGR02120 GspF general secreti 30.9 2E+02 0.0044 26.0 7.1 19 144-162 134-152 (399)
159 PF10661 EssA: WXG100 protein 30.8 55 0.0012 26.2 3.0 9 191-199 131-139 (145)
160 PF03408 Foamy_virus_ENV: Foam 30.8 62 0.0013 33.1 3.9 19 171-189 48-69 (981)
161 PF06024 DUF912: Nucleopolyhed 30.7 42 0.00092 25.0 2.2 11 190-200 68-78 (101)
162 PF04639 Baculo_E56: Baculovir 30.6 30 0.00065 31.0 1.6 9 11-19 74-82 (305)
163 COG4640 Predicted membrane pro 30.1 68 0.0015 30.2 3.8 7 165-171 32-38 (465)
164 PF11239 DUF3040: Protein of u 29.8 74 0.0016 22.6 3.3 20 146-165 9-28 (82)
165 KOG1326 Membrane-associated pr 29.7 47 0.001 34.7 2.9 6 180-185 1071-1076(1105)
166 PF06738 DUF1212: Protein of u 29.1 1.4E+02 0.0031 24.0 5.3 31 155-185 77-108 (193)
167 PRK01026 tetrahydromethanopter 28.9 2.3E+02 0.0049 20.5 7.4 13 157-169 26-38 (77)
168 PRK11875 psbT photosystem II r 28.6 88 0.0019 18.8 2.8 16 186-201 8-23 (31)
169 PHA02849 putative transmembran 28.3 73 0.0016 23.2 2.9 16 184-199 19-34 (82)
170 PRK10600 nitrate/nitrite senso 28.2 2.4E+02 0.0053 26.6 7.4 48 128-175 178-225 (569)
171 PF05227 CHASE3: CHASE3 domain 28.1 2.5E+02 0.0053 20.7 7.3 55 105-163 33-87 (138)
172 PF10661 EssA: WXG100 protein 28.1 68 0.0015 25.7 3.1 25 178-202 115-139 (145)
173 COG4068 Uncharacterized protei 28.1 1.2E+02 0.0027 20.9 3.9 32 163-194 27-58 (64)
174 PF14715 FixP_N: N-terminal do 27.9 82 0.0018 20.8 3.0 19 180-199 22-40 (51)
175 PF10960 DUF2762: Protein of u 27.9 51 0.0011 23.4 2.1 14 186-199 14-27 (71)
176 PF14812 PBP1_TM: Transmembran 27.4 3.4 7.5E-05 30.2 -4.0 8 177-184 63-70 (81)
177 PF08317 Spc7: Spc7 kinetochor 27.2 4.5E+02 0.0098 23.4 9.6 62 119-180 210-271 (325)
178 PHA02690 hypothetical protein; 26.8 2.6E+02 0.0056 20.5 7.4 21 148-168 10-30 (90)
179 PF06682 DUF1183: Protein of u 26.7 61 0.0013 29.4 2.9 20 181-201 158-177 (318)
180 PF04740 LXG: LXG domain of WX 26.6 3.5E+02 0.0075 21.9 8.2 56 120-175 112-167 (204)
181 COG0840 Tar Methyl-accepting c 26.5 4.5E+02 0.0098 23.2 11.8 55 112-166 325-379 (408)
182 PF04341 DUF485: Protein of un 26.4 79 0.0017 23.0 3.0 21 179-199 14-34 (91)
183 PRK13872 conjugal transfer pro 26.3 1.4E+02 0.0031 25.1 5.0 13 181-193 41-53 (228)
184 TIGR02120 GspF general secreti 26.3 3.8E+02 0.0083 24.2 8.1 30 133-162 325-354 (399)
185 COG3883 Uncharacterized protei 26.1 4.7E+02 0.01 23.2 10.0 62 109-170 36-97 (265)
186 PRK10869 recombination and rep 25.3 4.7E+02 0.01 25.3 8.9 75 110-185 298-373 (553)
187 PF11598 COMP: Cartilage oligo 25.0 2E+02 0.0043 18.6 5.6 28 122-149 5-32 (45)
188 PF03908 Sec20: Sec20; InterP 25.0 2.7E+02 0.0058 20.0 10.2 15 136-150 16-30 (92)
189 KOG4552 Vitamin-D-receptor int 24.5 4.7E+02 0.01 22.7 9.7 70 114-183 70-152 (272)
190 smart00787 Spc7 Spc7 kinetocho 24.1 5.3E+02 0.011 23.2 9.5 60 121-180 207-266 (312)
191 CHL00031 psbT photosystem II p 24.0 95 0.0021 18.9 2.4 16 186-201 8-23 (33)
192 PF13807 GNVR: G-rich domain o 23.9 2.6E+02 0.0056 19.5 7.8 24 119-142 5-28 (82)
193 PF00517 GP41: Retroviral enve 23.7 1.5E+02 0.0033 24.9 4.6 19 113-131 51-69 (204)
194 PF06789 UPF0258: Uncharacteri 23.7 38 0.00083 27.7 0.9 12 165-176 115-126 (159)
195 PF07851 TMPIT: TMPIT-like pro 23.5 5.7E+02 0.012 23.4 9.9 51 119-169 37-91 (330)
196 PF07544 Med9: RNA polymerase 22.4 2.1E+02 0.0047 20.4 4.6 36 106-141 47-82 (83)
197 COG0818 DgkA Diacylglycerol ki 22.2 3.5E+02 0.0076 21.2 6.0 50 148-197 69-118 (123)
198 PF01405 PsbT: Photosystem II 22.1 1.7E+02 0.0036 17.3 3.2 14 188-201 10-23 (29)
199 smart00283 MA Methyl-accepting 22.0 4.3E+02 0.0094 21.4 10.9 81 103-183 178-258 (262)
200 COG4537 ComGC Competence prote 21.3 84 0.0018 24.0 2.3 29 170-198 5-34 (107)
201 PF10669 Phage_Gp23: Protein g 21.3 2.9E+02 0.0063 21.1 5.2 26 105-130 83-108 (121)
202 COG4575 ElaB Uncharacterized c 21.3 3.8E+02 0.0082 20.5 10.0 24 165-188 68-91 (104)
203 PF11945 WASH_WAHD: WAHD domai 21.3 5.7E+02 0.012 22.9 8.0 51 115-175 15-65 (297)
204 PF01105 EMP24_GP25L: emp24/gp 21.0 32 0.0007 26.7 0.0 13 117-129 111-123 (183)
205 PF13150 DUF3989: Protein of u 20.8 1.9E+02 0.004 21.1 4.0 37 164-200 10-47 (85)
206 PF01601 Corona_S2: Coronaviru 20.1 8.6E+02 0.019 24.2 9.4 49 102-150 243-291 (610)
207 PF06120 Phage_HK97_TLTM: Tail 20.0 5.7E+02 0.012 23.0 7.7 22 110-131 80-101 (301)
No 1
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.5e-43 Score=302.94 Aligned_cols=179 Identities=42% Similarity=0.654 Sum_probs=137.6
Q ss_pred CccchhHHHHHHHHHHhhhhhhhhhhhhcccCCCCCCCCcccCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 028891 1 MSATKEFKEVLTMRTENLKVHESRRQLFSSTASKDSANPFVRQRPLATRSAAASTSSSPPPWANGSPSSSQLFPRKQDGE 80 (202)
Q Consensus 1 ~~~s~~Fk~vLe~Rt~n~k~~~~Rr~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (202)
+|++++||+|||+||+|||++++||++|+.++++....|. ++..+..+ +.+.....-...+.++.+...++.
T Consensus 133 a~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~------~n~~a~~~--~~~~l~~~~~~~sq~~~~ln~gd~ 204 (311)
T KOG0812|consen 133 ANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPV------SNSAARLH--PLKLLVDPKDEASQDVESLNMGDS 204 (311)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCccc------CcccccCC--chhhhcCchhhcccccccccccCC
Confidence 5899999999999999999999999999997654322221 11000000 000000000001112111111111
Q ss_pred CCchhhHHhhhHhhhhhhhHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 028891 81 SQPLLQQQQHHQQQQHHQQQQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA 160 (202)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~q~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~ 160 (202)
+ ..+++|++++|+.++|+++|.+++++||++|.||++||.+||+||.||||+|.|||+||+++..
T Consensus 205 ---~------------~~qqqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~l 269 (311)
T KOG0812|consen 205 ---S------------NPQQQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDL 269 (311)
T ss_pred ---C------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhh
Confidence 1 1126788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHhC
Q 028891 161 NVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFFVA 202 (202)
Q Consensus 161 nv~~a~~eL~kA~~~~~s~R~l~~~if~iliv~~iifvlf~a 202 (202)
||++|+.+|.||+.+.++|||+|++||+|+||||++||||+|
T Consensus 270 nI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvlf~~ 311 (311)
T KOG0812|consen 270 NIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVLFLA 311 (311)
T ss_pred hhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999986
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=2.2e-21 Score=169.02 Aligned_cols=102 Identities=25% Similarity=0.402 Sum_probs=94.0
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028891 100 QQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 179 (202)
Q Consensus 100 ~~q~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~ 179 (202)
++|+.+...++.++++|++||.+|.++|.||++||.+|+.||.+||..|||||+||+.+..+++.|.++|.||-+|+|++
T Consensus 200 e~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~ 279 (305)
T KOG0809|consen 200 EQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRN 279 (305)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcC
Confidence 55666667789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHh
Q 028891 180 RWLMIKIFFVLIFFLMIFLFFV 201 (202)
Q Consensus 180 R~l~~~if~iliv~~iifvlf~ 201 (202)
++|+|++++++++|++|+++++
T Consensus 280 ~k~~~i~~L~l~ii~llvllil 301 (305)
T KOG0809|consen 280 KKMKVILMLTLLIIALLVLLIL 301 (305)
T ss_pred CceEehHHHHHHHHHHHHHHHh
Confidence 9998888888888887777764
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=4.1e-21 Score=169.56 Aligned_cols=75 Identities=28% Similarity=0.403 Sum_probs=70.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~ 183 (202)
....+++|+++|.+||++|.||++||.+||.||..||||||+||.||..|.+||+.|..++++|.+|+++.|++.
T Consensus 197 ~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k 271 (297)
T KOG0810|consen 197 TLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWK 271 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhce
Confidence 467899999999999999999999999999999999999999999999999999999999999999998766433
No 4
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=1.3e-20 Score=164.08 Aligned_cols=93 Identities=23% Similarity=0.318 Sum_probs=78.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHH-
Q 028891 106 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI- 184 (202)
Q Consensus 106 ~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~- 184 (202)
++++...+++|.++|++||+.|.||++||++|+.||++||++||.||+||+.|..||+.|..+|.||.+|++++|+|.|
T Consensus 168 ~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ 247 (269)
T KOG0811|consen 168 LEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCI 247 (269)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhh
Confidence 3467889999999999999999999999999999999999999999999999999999999999999999977654333
Q ss_pred -HHHHHHHHHHHHHH
Q 028891 185 -KIFFVLIFFLMIFL 198 (202)
Q Consensus 185 -~if~iliv~~iifv 198 (202)
++|+++++++++++
T Consensus 248 ll~v~~~v~lii~l~ 262 (269)
T KOG0811|consen 248 LLLVGGPVGLIIGLI 262 (269)
T ss_pred hhHHHHHHHHHHHHH
Confidence 33443333343333
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.79 E-value=1.2e-18 Score=150.85 Aligned_cols=91 Identities=29% Similarity=0.437 Sum_probs=76.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 028891 107 PLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKI 186 (202)
Q Consensus 107 ~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~i 186 (202)
+++..++.+|.++|.+|++.|.||++||.||+.+|.+||+.||+||+|++.+..|++.|.+||.||-.|+++.++|-+++
T Consensus 184 ~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~ 263 (283)
T COG5325 184 EYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYL 263 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhH
Confidence 34555689999999999999999999999999999999999999999999999999999999999999998765554344
Q ss_pred HHHHHHHHHHH
Q 028891 187 FFVLIFFLMIF 197 (202)
Q Consensus 187 f~iliv~~iif 197 (202)
+++|+||.+|+
T Consensus 264 Llil~vv~lfv 274 (283)
T COG5325 264 LLILLVVLLFV 274 (283)
T ss_pred HHHHHHHHHHH
Confidence 44443433333
No 6
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.66 E-value=3.8e-16 Score=132.77 Aligned_cols=89 Identities=28% Similarity=0.428 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh---cCchhHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS---SNRWLMIKI 186 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~---s~R~l~~~i 186 (202)
...+++|+++|.+||++|.||.++|++|++||.+|.|++|.|+.|+++++.|++.|...+.+|.++.+ ++||.|+.|
T Consensus 177 L~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI 256 (280)
T COG5074 177 LAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGI 256 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhh
Confidence 46789999999999999999999999999999999999999999999999999999999999999975 455666555
Q ss_pred HHHHHHHHHHHH
Q 028891 187 FFVLIFFLMIFL 198 (202)
Q Consensus 187 f~iliv~~iifv 198 (202)
++++|+|++.||
T Consensus 257 ~~iii~viv~vv 268 (280)
T COG5074 257 CFIIIIVIVVVV 268 (280)
T ss_pred HHHHHHHHHHHH
Confidence 555555444444
No 7
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.56 E-value=5.4e-14 Score=96.56 Aligned_cols=63 Identities=30% Similarity=0.457 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028891 115 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 177 (202)
Q Consensus 115 eR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~ 177 (202)
+|+++|+.|+++|.+|++||.+|+.+|.+|+++||+||+||+.|..++..|..+|.+|.+++|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999999999999999999999999999999999999999999999999999875
No 8
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.41 E-value=1.1e-12 Score=88.11 Aligned_cols=59 Identities=42% Similarity=0.566 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 172 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA 172 (202)
++|++++..|+.+|.+|++||.+|+.+|.+|+++||+||+|++.+..+++.|.++|.||
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999999999999999999999999999875
No 9
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.36 E-value=6.5e-12 Score=85.61 Aligned_cols=64 Identities=36% Similarity=0.490 Sum_probs=61.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 172 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA 172 (202)
...++++|+++++.|+..|.++++||.+|+.+|.+|+++||+|+++++.+..++..|.++|.+|
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 4668899999999999999999999999999999999999999999999999999999999874
No 10
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=3.8e-09 Score=90.82 Aligned_cols=75 Identities=20% Similarity=0.263 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~ 183 (202)
+..++++.++.++.|+.+|..++.+...++..+.+|+.+||..++.++.+...+..+.+.|.+..+..+++++||
T Consensus 143 qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~ 217 (235)
T KOG3202|consen 143 QQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWC 217 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 456889999999999999999999999999999999999999999999999999999999999999766666444
No 11
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=2.2e-08 Score=88.66 Aligned_cols=88 Identities=15% Similarity=0.251 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLI 191 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~ili 191 (202)
..++..+++++|++.+.|+..|-.-|++.|-+|.+.||.|-+++..|..||++|+++|.||.+...+.|.|+ .+|++++
T Consensus 226 ~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~-lf~llvl 304 (316)
T KOG3894|consen 226 ELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFL-LFFLLVL 304 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHH-HHHHHHH
Confidence 344556899999999999999999999999999999999999999999999999999999999987776443 4666677
Q ss_pred HHHHHHHHH
Q 028891 192 FFLMIFLFF 200 (202)
Q Consensus 192 v~~iifvlf 200 (202)
-|+++|+-+
T Consensus 305 sf~lLFldw 313 (316)
T KOG3894|consen 305 SFSLLFLDW 313 (316)
T ss_pred HHHHHHHhh
Confidence 777777754
No 12
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=1.1e-06 Score=67.83 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCch-hHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW-LMIKIFFVLIF 192 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~-l~~~if~iliv 192 (202)
.|-+++++.+..-|.-|..+--++...|..|..++|.+++..+.+..-+.++...++...+. ++++ +|+.+++++++
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVA 109 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 56677899999999999999999999999999999999999999999999999999888777 4443 33344444555
Q ss_pred HHHHHH
Q 028891 193 FLMIFL 198 (202)
Q Consensus 193 ~~iifv 198 (202)
|||+|+
T Consensus 110 ~fi~~~ 115 (118)
T KOG3385|consen 110 FFILWV 115 (118)
T ss_pred HHHhhe
Confidence 555554
No 13
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.00 E-value=0.00027 Score=51.65 Aligned_cols=59 Identities=14% Similarity=0.272 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
+.+.+|+..+.++.++..+=-..+.+-||.|+.+++..++-......-.+.=.+..+..
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 56888999999999999988889999999999999987776666555554444444443
No 14
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0026 Score=55.99 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=80.1
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 028891 101 QQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 180 (202)
Q Consensus 101 ~q~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R 180 (202)
.|+.++++-++-+++=+..|..+..-..+|+.|.++=+.+|..=.+.|++-..||+.+..++.+|.+.=+++.+.. .-
T Consensus 170 ~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~--~~ 247 (269)
T KOG0811|consen 170 YQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK--CI 247 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch--hh
Confidence 4666777788888999999999999999999999999999999999999999999999999999986544433332 33
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 028891 181 WLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 181 ~l~~~if~iliv~~iifvlf 200 (202)
.+|+.++.+++++++++.++
T Consensus 248 ll~v~~~v~lii~l~i~~~~ 267 (269)
T KOG0811|consen 248 LLLVGGPVGLIIGLIIAGIA 267 (269)
T ss_pred hhHHHHHHHHHHHHHHHHhh
Confidence 57777777777777777653
No 15
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.59 E-value=0.0018 Score=50.15 Aligned_cols=52 Identities=19% Similarity=0.322 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 173 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~ 173 (202)
+.+++++..+.|+-+|+.+=-.-|-|-||-|+.+++-.+. ++.+....++..
T Consensus 29 ~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~----L~~~as~F~~~A 80 (116)
T KOG0860|consen 29 DKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQ----LQAGASQFEKTA 80 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHH----HHHHHHHHHHHH
Confidence 3456667777888888888888889999999988876543 444444444433
No 16
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.52 E-value=0.003 Score=54.61 Aligned_cols=71 Identities=14% Similarity=0.303 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 028891 128 HELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 128 ~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~iliv~~iifvlf 200 (202)
..|.+-...++..+.+-...|++.+..++.....+......|.++.+. +.+ |+.|+++++++++||+.|+|
T Consensus 177 ~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~-~~~-~~~~~~i~~v~~~Fi~mvl~ 247 (251)
T PF09753_consen 177 RQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSK-SWG-CWTWLMIFVVIIVFIMMVLF 247 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc-HHHHHHHHHHHHHHHHHHHH
Confidence 344445555677999999999999999999999999999999887543 223 55544444444444444444
No 17
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.37 E-value=0.0021 Score=57.33 Aligned_cols=87 Identities=9% Similarity=0.265 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFV 189 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~i 189 (202)
-..++.=.+.|.+|+.--.++..|...=+.||..=.-.+.+-.++|+.+..++++| .+|.+..++++|+||++++|
T Consensus 205 h~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kA----v~~qkkaRK~k~i~ii~~ii 280 (297)
T KOG0810|consen 205 HDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKA----VKYQKKARKWKIIIIIILII 280 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhceeeeehHHHH
Confidence 34567778889999999999999999999999999999999999999999999999 68888888999999888888
Q ss_pred HHHHHHHHHHH
Q 028891 190 LIFFLMIFLFF 200 (202)
Q Consensus 190 liv~~iifvlf 200 (202)
+++++++++++
T Consensus 281 i~~v~v~~i~~ 291 (297)
T KOG0810|consen 281 IIVVLVVVIVV 291 (297)
T ss_pred HHHHHhhhhcc
Confidence 77777777654
No 18
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=97.06 E-value=0.019 Score=50.60 Aligned_cols=93 Identities=16% Similarity=0.317 Sum_probs=80.8
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCch
Q 028891 102 QQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRW 181 (202)
Q Consensus 102 q~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~ 181 (202)
|+-++.+.++.|..=++.|.++..-..+|+.+..+=+.+|.-=+..|+.+-+|+..|...+.+|. .+.++.++.|.
T Consensus 186 qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~----~hqrrt~k~~~ 261 (283)
T COG5325 186 QQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAP----AHQRRTKKCRF 261 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhH----HHHhhhccchh
Confidence 44456677888999999999999999999999999999999999999999999999999999997 46688888888
Q ss_pred hHHHHHHHHHHHHHHHH
Q 028891 182 LMIKIFFVLIFFLMIFL 198 (202)
Q Consensus 182 l~~~if~iliv~~iifv 198 (202)
+++++++|+.+|+++-+
T Consensus 262 ~~Llil~vv~lfv~l~~ 278 (283)
T COG5325 262 YLLLILLVVLLFVSLIK 278 (283)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88888887766666544
No 19
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.92 E-value=0.028 Score=47.96 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHH
Q 028891 117 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMI 196 (202)
Q Consensus 117 ~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~iliv~~ii 196 (202)
.+.++.=.+.+.|--+|-.+|-.-++.|.|.|.+--+-.-++..|+.++.+-|.--.++.-.|||.+..|++++ +++++
T Consensus 134 t~rl~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l-~~~il 212 (220)
T KOG1666|consen 134 TDRLKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALL-VLAIL 212 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 44577778888888888899999999999999999999999999999999999988888889999875555443 34444
Q ss_pred HHHHh
Q 028891 197 FLFFV 201 (202)
Q Consensus 197 fvlf~ 201 (202)
++||+
T Consensus 213 ~ilY~ 217 (220)
T KOG1666|consen 213 LILYS 217 (220)
T ss_pred HHHHH
Confidence 45543
No 20
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.39 E-value=0.044 Score=47.51 Aligned_cols=82 Identities=7% Similarity=0.144 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHH
Q 028891 113 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIF 192 (202)
Q Consensus 113 iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~iliv 192 (202)
+..=.+.|.+|-.-..++.++..+=-.+|..=...+...+.|++....++++|.+. .+|.+.+|-..|.+|++++++|+
T Consensus 187 ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~Avks-aRaaRkkki~c~gI~~iii~viv 265 (280)
T COG5074 187 IKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKS-ARAARKKKIRCYGICFIIIIVIV 265 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHH-HHHHHhcceehhhhHHHHHHHHH
Confidence 34444455555555555555555555566555555666667777777777777776 34444455555555444444444
Q ss_pred HHH
Q 028891 193 FLM 195 (202)
Q Consensus 193 ~~i 195 (202)
+++
T Consensus 266 ~vv 268 (280)
T COG5074 266 VVV 268 (280)
T ss_pred HHH
Confidence 333
No 21
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=0.03 Score=49.51 Aligned_cols=57 Identities=21% Similarity=0.249 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028891 115 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 171 (202)
Q Consensus 115 eR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~k 171 (202)
+-++.+++|...+..|..|..+|+..|..|.+.||+|+++++....+|+.+++.+++
T Consensus 215 eiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 215 EIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 567789999999999999999999999999999999999999999999999988765
No 22
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=96.01 E-value=0.29 Score=35.92 Aligned_cols=50 Identities=10% Similarity=0.092 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHH
Q 028891 137 LATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKI 186 (202)
Q Consensus 137 La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~i 186 (202)
-...+.+|.+.|..+.+.......-+..+.+=+.++.+....-||+++..
T Consensus 27 t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~ 76 (92)
T PF03908_consen 27 TLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFA 76 (92)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 34456778888888888888888889999888888888888888776533
No 23
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=95.02 E-value=0.68 Score=39.93 Aligned_cols=60 Identities=13% Similarity=0.153 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 028891 116 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISS 178 (202)
Q Consensus 116 R~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s 178 (202)
=.+.+-.+.++..+-. --....+.+-.+.+.+-+.-++....-+......+.++.++..+
T Consensus 156 Laesll~LArslKtna---lAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s 215 (244)
T KOG2678|consen 156 LAESLLKLARSLKTNA---LAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLS 215 (244)
T ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhh
Confidence 3344444444433332 23344677777778887777887777777777777777666543
No 24
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=94.57 E-value=0.94 Score=30.86 Aligned_cols=58 Identities=19% Similarity=0.189 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
+.++.-.+.+.|.-++-.+....+..|++.|.++...+.++..++..+..-|.+-.++
T Consensus 8 ~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 8 DSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 3677788888899999999999999999999999999999999999999888765543
No 25
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.03 E-value=1.6 Score=31.47 Aligned_cols=14 Identities=29% Similarity=0.454 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTI 127 (202)
Q Consensus 114 qeR~~~i~~Ie~~I 127 (202)
-+|.+.++.|+...
T Consensus 27 l~Rge~L~~L~~kt 40 (89)
T PF00957_consen 27 LERGEKLEELEDKT 40 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHcCchHHHHHHHH
Confidence 34444444444433
No 26
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.06 E-value=1.3 Score=39.58 Aligned_cols=87 Identities=9% Similarity=0.266 Sum_probs=72.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 028891 106 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 185 (202)
Q Consensus 106 ~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~ 185 (202)
+-+.+..+.+=.+.|-.+..-..+|+.|..+=++.|.-=.=.|+.+--.+++|...+.+|- .|.++.++.++.+++
T Consensus 213 ~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe----~yQk~~~k~~~i~~L 288 (305)
T KOG0809|consen 213 VREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAE----RYQKRNKKMKVILML 288 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHH----HHHhcCCceEehHHH
Confidence 4467888999999999999999999999999999999989999999999999999999884 788999998876655
Q ss_pred HHHHHHHHHHH
Q 028891 186 IFFVLIFFLMI 196 (202)
Q Consensus 186 if~iliv~~ii 196 (202)
+++|+++++++
T Consensus 289 ~l~ii~llvll 299 (305)
T KOG0809|consen 289 TLLIIALLVLL 299 (305)
T ss_pred HHHHHHHHHHH
Confidence 54444444443
No 27
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=93.02 E-value=1.4 Score=44.35 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFV 189 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~i 189 (202)
.+..+.+.+..+++-+..++..+..+ ....+.+-..++...+........+|..| ||...+++++
T Consensus 358 ~v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~y----R~~~~lil~~ 422 (806)
T PF05478_consen 358 VVPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSY----RWIVGLILCC 422 (806)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHH----HHHHHHHHHH
Confidence 44555566666666666666666555 44455555555666666655555555544 7776544443
No 28
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=92.02 E-value=6.8 Score=33.88 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELGNIFNQLATLV 141 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV 141 (202)
++-...|.++.++|-+++.+-..=|.+-+.-+
T Consensus 63 ~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~ 94 (230)
T PF03904_consen 63 EEKQDIREKNLKEIKSSLEETTKDFIDKTEKV 94 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667777777777777655565554433
No 29
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=91.77 E-value=2.8 Score=36.16 Aligned_cols=57 Identities=11% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHHHHHHHHHHHHHh
Q 028891 145 GEIAIRIDENMDDTMANVEGAQGALLKYLNSISS--NRWLMIKIFFVLIFFLMIFLFFV 201 (202)
Q Consensus 145 ge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s--~R~l~~~if~iliv~~iifvlf~ 201 (202)
+..|..=..-++.+...++.....|.++.++.+. ++++.|..+++|++++++||+.+
T Consensus 187 ~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~Fi~mv 245 (251)
T PF09753_consen 187 SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIVFIMMV 245 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3444443445666666666666777766666543 44555666665666566665543
No 30
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=91.27 E-value=0.31 Score=33.51 Aligned_cols=14 Identities=29% Similarity=0.752 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 028891 185 KIFFVLIFFLMIFL 198 (202)
Q Consensus 185 ~if~iliv~~iifv 198 (202)
++|+++++|+++|+
T Consensus 41 i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 41 IFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 31
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.21 E-value=5.1 Score=34.80 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=59.9
Q ss_pred HHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028891 100 QQQQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQG 167 (202)
Q Consensus 100 ~~q~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~ 167 (202)
+.|++++.+|++-+..=+..+..+...-..+|+=-.+=+.++.....-+|+++.-++.....+..-.+
T Consensus 141 ~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~ 208 (235)
T KOG3202|consen 141 QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR 208 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888889999999999999988888888877788889999999999999999999999988877
No 32
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.33 E-value=5.2 Score=34.48 Aligned_cols=73 Identities=11% Similarity=0.137 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhH-HHHHHHHHHHHHHH
Q 028891 124 ESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM-IKIFFVLIFFLMIF 197 (202)
Q Consensus 124 e~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~-~~if~iliv~~iif 197 (202)
-+.+.|+-++...--.-.+-|+.++..|-.-+.++....-.-+.=| ...+.+|++--++ -.++.++++|++||
T Consensus 155 ~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll-~kIk~kkrrdslILa~Vis~C~llllfy 228 (231)
T KOG3208|consen 155 IRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLL-QKIKIKKRRDSLILAAVISVCTLLLLFY 228 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHH-HHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 3344455555544445566799999999999998888876655444 4444444433343 23444444444444
No 33
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=1.1 Score=38.03 Aligned_cols=35 Identities=17% Similarity=0.229 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 117 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRI 151 (202)
Q Consensus 117 ~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrI 151 (202)
-+.+-++...+.|+.+++-+=-..|-+-||-|+-+
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 34567777788888877766666666666655443
No 34
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.51 E-value=10 Score=34.05 Aligned_cols=93 Identities=14% Similarity=0.199 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh----cCchhHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS----SNRWLMI 184 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~----s~R~l~~ 184 (202)
+...+.+-++=+++=.+++..+-.-..+|+.+..+=..||..=++-+....+||+.+.-.+.-|..-.- +-..--|
T Consensus 211 Qm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRw 290 (311)
T KOG0812|consen 211 QMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRW 290 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchH
Confidence 556666666667777777777777777777777777778888888888888888888777776664432 2234456
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028891 185 KIFFVLIFFLMIFLFFV 201 (202)
Q Consensus 185 ~if~iliv~~iifvlf~ 201 (202)
.++=|..|+++||+||+
T Consensus 291 LmvkiF~i~ivFflvfv 307 (311)
T KOG0812|consen 291 LMVKIFGILIVFFLVFV 307 (311)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777777777777775
No 35
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=88.55 E-value=0.95 Score=31.10 Aligned_cols=35 Identities=14% Similarity=0.431 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 028891 166 QGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 166 ~~eL~kA~~~~~s~R~l~~~if~iliv~~iifvlf 200 (202)
.++..+..++.++.+|+++.++++++++.++...|
T Consensus 25 ~~~~~k~qk~~~~~~~i~~~~~i~~l~v~~~~~~~ 59 (59)
T PF09889_consen 25 REEYRKRQKRMRKTQYIFFGIFILFLAVWIFMTFF 59 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44555566666677899888888877777776554
No 36
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=88.14 E-value=7 Score=27.30 Aligned_cols=51 Identities=12% Similarity=0.294 Sum_probs=25.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh-cCchhHHHHHHHHHHHHHHHH
Q 028891 144 QGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS-SNRWLMIKIFFVLIFFLMIFL 198 (202)
Q Consensus 144 Qge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~-s~R~l~~~if~iliv~~iifv 198 (202)
..+-++.+|.+.......+...+..| ...+ ..+|++-.+.+.++.+++.|+
T Consensus 18 ~~~~i~~lE~~~~~~e~~i~~~~~~l----~~I~~n~kW~~r~iiGaiI~~i~~~i 69 (71)
T PF10779_consen 18 HEERIDKLEKRDAANEKDIKNLNKQL----EKIKSNTKWIWRTIIGAIITAIIYLI 69 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444333 3333 346777667776666665554
No 37
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.69 E-value=11 Score=32.25 Aligned_cols=65 Identities=6% Similarity=0.071 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~ 183 (202)
-+++-++.+.++-..-..+-.=+.+|+-.|-.+-.-+-+...-+.=.+.-|.--.++...-||++
T Consensus 130 ~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF 194 (213)
T KOG3251|consen 130 SLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIF 194 (213)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHH
Confidence 34555556666666666666667788888888777777777766666666665666666666654
No 38
>PF14992 TMCO5: TMCO5 family
Probab=86.36 E-value=18 Score=32.24 Aligned_cols=55 Identities=15% Similarity=0.190 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028891 111 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 111 ~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a 165 (202)
.-+.....++.+++++...++++-.+=+..+++=.|.|.+||+..+....+.+-+
T Consensus 123 ~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~el~ 177 (280)
T PF14992_consen 123 ESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKELS 177 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888999989999999999989989888888899998777666655433
No 39
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=15 Score=28.67 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELG 131 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~ 131 (202)
+-+-+-||.+.+..|+.-...|.
T Consensus 48 NV~KVlER~ekL~~L~drad~L~ 70 (116)
T KOG0860|consen 48 NVEKVLERGEKLDELDDRADQLQ 70 (116)
T ss_pred hHHHHHHhcchHHHHHHHHHHHH
Confidence 44455566666666655554443
No 40
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=79.36 E-value=52 Score=30.82 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028891 121 QNVESTIHELGNIF-NQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 166 (202)
Q Consensus 121 ~~Ie~~I~eL~~if-~~La~mV~eQge~IdrId~Nve~a~~nv~~a~ 166 (202)
+.+|..+.++-++- ++++.+=+|+.-|=.+|++.-.+=..+|..+.
T Consensus 309 erLEEqLNdlteLqQnEi~nLKqElasmeervaYQsyERaRdIqEal 355 (455)
T KOG3850|consen 309 ERLEEQLNDLTELQQNEIANLKQELASMEERVAYQSYERARDIQEAL 355 (455)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555444442 57888888888888888776555444444443
No 41
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=76.36 E-value=49 Score=28.75 Aligned_cols=41 Identities=7% Similarity=-0.034 Sum_probs=18.4
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHH----HHHhhcCchhHHHH
Q 028891 146 EIAIRIDENMDDTMANVEGAQGALLKY----LNSISSNRWLMIKI 186 (202)
Q Consensus 146 e~IdrId~Nve~a~~nv~~a~~eL~kA----~~~~~s~R~l~~~i 186 (202)
..|+.=..-+..+..-++.....|..+ .+|.++.+..|+.|
T Consensus 176 salkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~ 220 (244)
T KOG2678|consen 176 SALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYI 220 (244)
T ss_pred HHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHH
Confidence 334333333444444445555555443 34445555444443
No 42
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=75.66 E-value=23 Score=24.64 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 166 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~ 166 (202)
+.|..||..+.-.-....+|...|.+|...|+++...+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4466777777777777777888888888888888877777666665543
No 43
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.77 E-value=24 Score=31.35 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028891 128 HELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 173 (202)
Q Consensus 128 ~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~ 173 (202)
.|....-..-..++.+|+|.|++||.+++........|.+.|..-.
T Consensus 89 ~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~ 134 (273)
T KOG3065|consen 89 EESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELK 134 (273)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3445556677889999999999999999999999888888775433
No 44
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=73.28 E-value=12 Score=34.76 Aligned_cols=23 Identities=17% Similarity=0.371 Sum_probs=12.5
Q ss_pred hcCchhHHHHHHHHHHHHHHHHH
Q 028891 177 SSNRWLMIKIFFVLIFFLMIFLF 199 (202)
Q Consensus 177 ~s~R~l~~~if~iliv~~iifvl 199 (202)
...||+..+.++++.+++.+|.+
T Consensus 182 E~yRw~~~~~lL~l~l~icl~~l 204 (406)
T PF04906_consen 182 EYYRWLAYLGLLILDLVICLLGL 204 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34578876555554444444443
No 45
>PHA02844 putative transmembrane protein; Provisional
Probab=71.77 E-value=4.4 Score=29.12 Aligned_cols=9 Identities=0% Similarity=-0.208 Sum_probs=4.0
Q ss_pred CchhHHHHH
Q 028891 179 NRWLMIKIF 187 (202)
Q Consensus 179 ~R~l~~~if 187 (202)
..|..++|+
T Consensus 46 ~~~~~~ii~ 54 (75)
T PHA02844 46 SSTKIWILT 54 (75)
T ss_pred hhHHHHHHH
Confidence 345544433
No 46
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=71.75 E-value=42 Score=25.55 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 115 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 115 eR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
..-+.|..+...+...++-...+...+..||++|+.|.........+++
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD 98 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445666666666677777777777777777777777776666555544
No 47
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=70.69 E-value=25 Score=22.45 Aligned_cols=55 Identities=15% Similarity=0.183 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 122 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 122 ~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
+-.+.+..|.....++..+..+=+.+|..=..-++....+++.+...+.++.+..
T Consensus 3 e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l 57 (60)
T cd00193 3 ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRL 57 (60)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888888887777778888888888888887777654
No 48
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=70.68 E-value=29 Score=23.68 Aligned_cols=46 Identities=11% Similarity=0.199 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 164 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~ 164 (202)
.++.++.-+..|-..|.....--...++.|+|+|..+|.-..++-.
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~ 47 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVI 47 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3677888888999999999999999999999999999987766543
No 49
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=89 Score=28.36 Aligned_cols=79 Identities=18% Similarity=0.220 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHh---hcCchhHHHHHHHHHHHHHH
Q 028891 123 VESTIHELGNIFNQLATLVSQQGEIAIR---IDENMDDTMANVEGAQGALLKYLNSI---SSNRWLMIKIFFVLIFFLMI 196 (202)
Q Consensus 123 Ie~~I~eL~~if~~La~mV~eQge~Idr---Id~Nve~a~~nv~~a~~eL~kA~~~~---~s~R~l~~~if~iliv~~ii 196 (202)
.+..+.++.++=+.|-.+..-|..+-+. =+.||+-..+++.++.+.++...+.. +.++.-.-.++++.+++.-+
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf 306 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSF 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 3334445555555566666666655544 47889999999999999998766554 34444444777878888878
Q ss_pred HHHHh
Q 028891 197 FLFFV 201 (202)
Q Consensus 197 fvlf~ 201 (202)
++||+
T Consensus 307 ~lLFl 311 (316)
T KOG3894|consen 307 SLLFL 311 (316)
T ss_pred HHHHH
Confidence 88885
No 50
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.18 E-value=49 Score=28.43 Aligned_cols=33 Identities=18% Similarity=0.285 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRID 152 (202)
Q Consensus 120 i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId 152 (202)
+.++.....++..+...=-..|-.-|+.++..+
T Consensus 136 ~~~~n~el~~v~~im~~niedvl~rg~~l~~l~ 168 (216)
T KOG0862|consen 136 LLKLNQELQDVQRIMVENLEDVLQRGEVLNALS 168 (216)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhh
Confidence 333334444444444433334444444444443
No 51
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=67.83 E-value=9 Score=36.68 Aligned_cols=15 Identities=7% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q 028891 155 MDDTMANVEGAQGAL 169 (202)
Q Consensus 155 ve~a~~nv~~a~~eL 169 (202)
+++|++.++++++-|
T Consensus 447 L~~A~~~L~~Sn~iL 461 (490)
T PF00523_consen 447 LNNAKDLLDKSNQIL 461 (490)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555555554444
No 52
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=67.18 E-value=52 Score=24.80 Aligned_cols=45 Identities=11% Similarity=0.175 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 028891 116 RAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA 160 (202)
Q Consensus 116 R~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~ 160 (202)
-+..+..||..-..+..=+.++-.=++.|....+..|-+++....
T Consensus 9 ~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~r 53 (98)
T PF11166_consen 9 HEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINR 53 (98)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHH
Confidence 345677788777777777777888888899999999998888443
No 53
>PHA03054 IMV membrane protein; Provisional
Probab=66.26 E-value=6.7 Score=27.91 Aligned_cols=7 Identities=14% Similarity=0.444 Sum_probs=2.9
Q ss_pred CchhHHH
Q 028891 179 NRWLMIK 185 (202)
Q Consensus 179 ~R~l~~~ 185 (202)
..|.+++
T Consensus 46 ~~~~~~i 52 (72)
T PHA03054 46 WGWYWLI 52 (72)
T ss_pred chHHHHH
Confidence 3344433
No 54
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.89 E-value=32 Score=27.10 Aligned_cols=49 Identities=24% Similarity=0.384 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQG 167 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~ 167 (202)
.|+.+...+.+..++-..+...|.+=++-+.+|...++..+.-|..=..
T Consensus 69 RId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ 117 (126)
T PF07889_consen 69 RIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEG 117 (126)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4666666666666666666666666666666666666665555554333
No 55
>PHA02975 hypothetical protein; Provisional
Probab=65.89 E-value=8.5 Score=27.23 Aligned_cols=10 Identities=30% Similarity=0.487 Sum_probs=4.3
Q ss_pred cCchhHHHHH
Q 028891 178 SNRWLMIKIF 187 (202)
Q Consensus 178 s~R~l~~~if 187 (202)
+..|.+++++
T Consensus 41 ~~~~~~~ii~ 50 (69)
T PHA02975 41 SSLSIILIIF 50 (69)
T ss_pred CchHHHHHHH
Confidence 3445444433
No 56
>PHA02819 hypothetical protein; Provisional
Probab=65.56 E-value=6.9 Score=27.82 Aligned_cols=8 Identities=13% Similarity=-0.097 Sum_probs=3.2
Q ss_pred CchhHHHH
Q 028891 179 NRWLMIKI 186 (202)
Q Consensus 179 ~R~l~~~i 186 (202)
..|.++++
T Consensus 44 ~~~~~~ii 51 (71)
T PHA02819 44 FLRYYLII 51 (71)
T ss_pred hhHHHHHH
Confidence 33444333
No 57
>PF05366 Sarcolipin: Sarcolipin; InterPro: IPR008028 Sarcolipin is a 31 amino acid integral membrane protein that regulates Ca-ATPase activity in skeletal muscle [].; GO: 0030234 enzyme regulator activity, 0016020 membrane; PDB: 1JDM_A.
Probab=64.93 E-value=9.6 Score=22.45 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=17.4
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 028891 178 SNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 178 s~R~l~~~if~iliv~~iifvlf 200 (202)
+.|-+++-+-.++|.++++|.++
T Consensus 4 strel~lnftvvlitvilmwllv 26 (31)
T PF05366_consen 4 STRELFLNFTVVLITVILMWLLV 26 (31)
T ss_dssp -SSSSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHhhhHHHHHHHHHHHHH
Confidence 45677777778888888888874
No 58
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=64.64 E-value=13 Score=27.39 Aligned_cols=7 Identities=14% Similarity=0.211 Sum_probs=3.1
Q ss_pred HHHHHHH
Q 028891 167 GALLKYL 173 (202)
Q Consensus 167 ~eL~kA~ 173 (202)
.+|.+-.
T Consensus 20 DQL~qlV 26 (84)
T PF06143_consen 20 DQLEQLV 26 (84)
T ss_pred HHHHHHH
Confidence 3444444
No 59
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=61.79 E-value=83 Score=26.89 Aligned_cols=52 Identities=15% Similarity=0.298 Sum_probs=28.9
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHH--HH---h-h------cCchhHHHHHHHHHHHHHHHHHHh
Q 028891 150 RIDENMDDTMANVEGAQGALLKYL--NS---I-S------SNRWLMIKIFFVLIFFLMIFLFFV 201 (202)
Q Consensus 150 rId~Nve~a~~nv~~a~~eL~kA~--~~---~-~------s~R~l~~~if~iliv~~iifvlf~ 201 (202)
.-...+++|...++.+...|.++. +| + . ..-|--+.+.++=+++|+++.+++
T Consensus 110 ~ak~~l~~aE~~~e~~~~~L~~~Il~RYHEEQiWSDKIRr~STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 110 EAKEALEEAEEKVEEAFDDLMRAILTRYHEEQIWSDKIRRASTWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344456666666666666666544 22 2 1 123555666666666666665553
No 60
>PRK00295 hypothetical protein; Provisional
Probab=61.08 E-value=53 Score=22.83 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028891 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 164 (202)
Q Consensus 120 i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~ 164 (202)
|..||..+.-.-....+|+..|.+|...|++....+..-...+..
T Consensus 7 i~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 7 VTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777888888888888888887776666555544
No 61
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=61.04 E-value=60 Score=23.46 Aligned_cols=63 Identities=21% Similarity=0.318 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHHH--------HHHHHhhcCchhHH
Q 028891 122 NVESTIHELGNIFNQLATLVSQQG-EIAIRIDENMDDTMANVEGAQGALL--------KYLNSISSNRWLMI 184 (202)
Q Consensus 122 ~Ie~~I~eL~~if~~La~mV~eQg-e~IdrId~Nve~a~~nv~~a~~eL~--------kA~~~~~s~R~l~~ 184 (202)
+|+.-+.++.++....+....+.. +.-++++..++++...+..+...+. .+..|.+.+.|.-+
T Consensus 6 ~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P~~sv 77 (94)
T PF05957_consen 6 ELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENPWQSV 77 (94)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHChHHHH
Confidence 444555555555555555554443 3335566666666655555444333 34456677888763
No 62
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=60.48 E-value=98 Score=29.12 Aligned_cols=6 Identities=67% Similarity=1.276 Sum_probs=3.0
Q ss_pred cCchhH
Q 028891 178 SNRWLM 183 (202)
Q Consensus 178 s~R~l~ 183 (202)
.-||+.
T Consensus 206 ~~Rw~~ 211 (418)
T cd07912 206 SYRWLA 211 (418)
T ss_pred HHHHHH
Confidence 345554
No 63
>PHA02692 hypothetical protein; Provisional
Probab=60.35 E-value=11 Score=26.78 Aligned_cols=9 Identities=11% Similarity=0.453 Sum_probs=3.8
Q ss_pred cCchhHHHH
Q 028891 178 SNRWLMIKI 186 (202)
Q Consensus 178 s~R~l~~~i 186 (202)
+..|..+++
T Consensus 42 ~~~~~~~ii 50 (70)
T PHA02692 42 GVPWTTVFL 50 (70)
T ss_pred CcchHHHHH
Confidence 344544333
No 64
>PRK00736 hypothetical protein; Provisional
Probab=59.77 E-value=56 Score=22.70 Aligned_cols=45 Identities=13% Similarity=0.220 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028891 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 164 (202)
Q Consensus 120 i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~ 164 (202)
|..||..+.-.-....+|+..|.+|...|+++...+..-...+..
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777778888888888888877766666555543
No 65
>PHA02675 ORF104 fusion protein; Provisional
Probab=59.64 E-value=69 Score=23.65 Aligned_cols=37 Identities=8% Similarity=0.205 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 127 IHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 127 I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
+..|-++|..+..-...=++.|+|+|.+.+....++-
T Consensus 39 L~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml 75 (90)
T PHA02675 39 LVSLLDSYKTITDCCRETGARLDRLERHLETLREALL 75 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344477777888888899999999998887665543
No 66
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=59.36 E-value=51 Score=22.32 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 028891 122 NVESTIHELGNIFNQLATLVSQQGEIAIRIDENM 155 (202)
Q Consensus 122 ~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nv 155 (202)
+||..+..+......+-....+=++.|+.|+.||
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444433333333333333344444555544
No 67
>PRK02793 phi X174 lysis protein; Provisional
Probab=59.24 E-value=60 Score=22.83 Aligned_cols=47 Identities=11% Similarity=0.135 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 164 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~ 164 (202)
+.|..||..+.-.-....+|+..|.+|...|++....+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666677777777777777778888888887777666655554443
No 68
>PRK04325 hypothetical protein; Provisional
Probab=58.91 E-value=62 Score=22.89 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028891 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 164 (202)
Q Consensus 120 i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~ 164 (202)
|..||..+.-.-....+|+..|.+|...|++....+..-...+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777778888888888888877666665555544
No 69
>PRK14710 hypothetical protein; Provisional
Probab=57.08 E-value=13 Score=26.72 Aligned_cols=21 Identities=19% Similarity=0.498 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 028891 180 RWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 180 R~l~~~if~iliv~~iifvlf 200 (202)
.++++.||.++|+++++++-+
T Consensus 9 skm~ififaiii~v~lcv~ty 29 (86)
T PRK14710 9 SKMIIFIFAIIIIVVLCVITY 29 (86)
T ss_pred hHHHHHHHHHHHHHHHHHhhh
Confidence 356667888888888776643
No 70
>PHA02414 hypothetical protein
Probab=56.43 E-value=87 Score=23.82 Aligned_cols=45 Identities=18% Similarity=0.196 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
.-.+++..+.||..|..-|-.-+.-|.|---.|-+.++.-..-++
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 456788999999999999988888888888888887766544443
No 71
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=55.81 E-value=2e+02 Score=29.20 Aligned_cols=23 Identities=9% Similarity=0.122 Sum_probs=14.0
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 028891 178 SNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 178 s~R~l~~~if~iliv~~iifvlf 200 (202)
+.-...+++.+++.+++++.++|
T Consensus 408 ~y~~yR~~~~lil~~~llLIv~~ 430 (806)
T PF05478_consen 408 KYDSYRWIVGLILCCVLLLIVLC 430 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667777666666666554
No 72
>PRK09793 methyl-accepting protein IV; Provisional
Probab=55.77 E-value=1.6e+02 Score=27.87 Aligned_cols=57 Identities=9% Similarity=0.201 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a 165 (202)
....+.+=.+.+.+|...+.++.+...+++..+.+|...++.|..++++...-++..
T Consensus 427 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~ 483 (533)
T PRK09793 427 GSKLVNNAAATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQN 483 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556678889999999999999999999999999998888777655544443
No 73
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=55.70 E-value=77 Score=23.03 Aligned_cols=55 Identities=11% Similarity=0.259 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 122 NVESTIHELGNIFNQLATLVSQQ-GEIAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 122 ~Ie~~I~eL~~if~~La~mV~eQ-ge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
+.+..-.++..-|..|-..+.+. .++++.||..-......+..-...+.......
T Consensus 36 ~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l 91 (127)
T smart00502 36 NAADVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556777788888888764 57888899888777777777776666655554
No 74
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.32 E-value=48 Score=28.32 Aligned_cols=13 Identities=23% Similarity=0.483 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhHH
Q 028891 144 QGEIAIRIDENMD 156 (202)
Q Consensus 144 Qge~IdrId~Nve 156 (202)
-|-|+++||.=.+
T Consensus 138 k~vM~eNIekvld 150 (217)
T KOG0859|consen 138 KGVMMENIEKVLD 150 (217)
T ss_pred HHHHHHHHHHHHh
Confidence 4556666665443
No 75
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=54.79 E-value=1.6e+02 Score=28.12 Aligned_cols=57 Identities=11% Similarity=0.205 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028891 108 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 164 (202)
Q Consensus 108 ~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~ 164 (202)
.....+.+=.+.+.+|...+.++.++..+++.-+.+|...++.|..++++...-++.
T Consensus 430 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 430 VGSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666677999999999999999999999999999999998888765554443
No 76
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=53.99 E-value=1.1e+02 Score=24.38 Aligned_cols=63 Identities=13% Similarity=0.276 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 171 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~k 171 (202)
....+.+=.+.+..|...+.++.....++..-+.+|.+.+..|...+.+...-++.....+..
T Consensus 126 ~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~ 188 (213)
T PF00015_consen 126 GSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSEE 188 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566678888888888888888888888888888888887766655555554444433
No 77
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=53.90 E-value=1.5e+02 Score=28.04 Aligned_cols=58 Identities=9% Similarity=0.142 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 171 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~k 171 (202)
.+=..+|.+.++.|.+..+-+..|-..+.++.+-|..|+..+-.+...+....+.|..
T Consensus 41 ~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 41 KQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 3344566777777777777777777777777777777777766666655555555443
No 78
>PRK02119 hypothetical protein; Provisional
Probab=53.65 E-value=77 Score=22.37 Aligned_cols=48 Identities=10% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 028891 117 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEG 164 (202)
Q Consensus 117 ~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~ 164 (202)
.+.|..||..+.-.-..-.+|+..|.+|...|++....+..-...+..
T Consensus 8 e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 8 ENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677777777777777778888888888888877666665555543
No 79
>PRK11637 AmiB activator; Provisional
Probab=53.58 E-value=1.9e+02 Score=26.76 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 111 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 111 ~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
..+.+-..++..+++.|..+..-...+...+..-..-|+..+..+...+..++.....|.+-.+.
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455677777777777777777777777777777777777777777777777777654433
No 80
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=52.67 E-value=2e+02 Score=27.08 Aligned_cols=55 Identities=11% Similarity=0.210 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
....+++=.+.+.+|...+.++.+.+.+++.-+.+|...++.|..++++....++
T Consensus 429 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~ 483 (553)
T PRK15048 429 GSVLVESAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQ 483 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566788899999999999999999999999999998888877666555
No 81
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=52.05 E-value=19 Score=23.58 Aligned_cols=17 Identities=12% Similarity=0.536 Sum_probs=9.8
Q ss_pred hcCchhHHHHHHHHHHH
Q 028891 177 SSNRWLMIKIFFVLIFF 193 (202)
Q Consensus 177 ~s~R~l~~~if~iliv~ 193 (202)
|+-||.+++++++.++|
T Consensus 2 kk~rwiili~iv~~Cl~ 18 (47)
T PRK10299 2 KKFRWVVLVVVVLACLL 18 (47)
T ss_pred ceeeehHHHHHHHHHHH
Confidence 45688876555444333
No 82
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=52.03 E-value=34 Score=22.14 Aligned_cols=15 Identities=7% Similarity=0.040 Sum_probs=8.8
Q ss_pred HHHHHHHhhcCchhH
Q 028891 169 LLKYLNSISSNRWLM 183 (202)
Q Consensus 169 L~kA~~~~~s~R~l~ 183 (202)
.+.+.++-+++|.-+
T Consensus 5 ~~~~~~~f~~nk~a~ 19 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAV 19 (56)
T ss_pred HHHHHHHHHhCchHH
Confidence 345666666676543
No 83
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=51.51 E-value=16 Score=25.18 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 028891 181 WLMIKIFFVLIF 192 (202)
Q Consensus 181 ~l~~~if~iliv 192 (202)
..++++|+++++
T Consensus 42 ~~~~~~~li~aL 53 (64)
T COG4068 42 NFMILMFLILAL 53 (64)
T ss_pred HHHHHHHHHHHH
Confidence 334445554444
No 84
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=50.54 E-value=1e+02 Score=23.85 Aligned_cols=16 Identities=13% Similarity=-0.095 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhcCch
Q 028891 166 QGALLKYLNSISSNRW 181 (202)
Q Consensus 166 ~~eL~kA~~~~~s~R~ 181 (202)
.+|+....++.+--+|
T Consensus 49 ~~el~~L~rR~~li~~ 64 (130)
T PF11026_consen 49 RRELRILRRRARLIRR 64 (130)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666666555554333
No 85
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=50.37 E-value=22 Score=25.12 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028891 183 MIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 183 ~~~if~iliv~~iifvlf 200 (202)
+++++||+|+.+|++.+.
T Consensus 6 iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455666666666666553
No 86
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=49.99 E-value=20 Score=26.81 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHhhcCchhH
Q 028891 164 GAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 164 ~a~~eL~kA~~~~~s~R~l~ 183 (202)
.|..-|...+.+..+.+|-=
T Consensus 32 ~G~~YL~~~y~y~~sh~WRN 51 (103)
T PF06422_consen 32 SGDDYLEESYGYSYSHRWRN 51 (103)
T ss_pred eHHHHHhhhccccccchhhh
Confidence 35567777778877777753
No 87
>PLN03160 uncharacterized protein; Provisional
Probab=49.79 E-value=11 Score=32.16 Aligned_cols=9 Identities=0% Similarity=-0.360 Sum_probs=3.5
Q ss_pred cCchhHHHH
Q 028891 178 SNRWLMIKI 186 (202)
Q Consensus 178 s~R~l~~~i 186 (202)
..+||.|++
T Consensus 36 ~~~c~~~~~ 44 (219)
T PLN03160 36 CIKCCGCIT 44 (219)
T ss_pred ceEEHHHHH
Confidence 333443333
No 88
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=48.90 E-value=63 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 133 IFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 133 if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
+|.++-...-.-||.--+++.-.++..+|.+
T Consensus 120 ~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e 150 (397)
T COG1459 120 VFPDLYVAMVAAGERSGNLDEVLQRLAKYLE 150 (397)
T ss_pred cCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3333333333444444444444444444433
No 89
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=48.72 E-value=80 Score=30.02 Aligned_cols=56 Identities=9% Similarity=0.158 Sum_probs=49.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 108 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 108 ~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
-...+=..|+.+.+.+++....++.|....-.|+..|...|.+.|.+|+....-|.
T Consensus 45 kk~aleetk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 45 KKAALEETKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 34556667888999999999999999999999999999999999999998877665
No 90
>PRK14762 membrane protein; Provisional
Probab=48.46 E-value=31 Score=19.80 Aligned_cols=8 Identities=38% Similarity=1.178 Sum_probs=3.1
Q ss_pred hhHHHHHH
Q 028891 181 WLMIKIFF 188 (202)
Q Consensus 181 ~l~~~if~ 188 (202)
|.+.+||+
T Consensus 6 w~i~iifl 13 (27)
T PRK14762 6 WAVLIIFL 13 (27)
T ss_pred HHHHHHHH
Confidence 33333333
No 91
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=48.38 E-value=41 Score=29.33 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCc--hhHHHHHHHHHHHHHHHHH
Q 028891 160 ANVEGAQGALLKYLNSISSNR--WLMIKIFFVLIFFLMIFLF 199 (202)
Q Consensus 160 ~nv~~a~~eL~kA~~~~~s~R--~l~~~if~iliv~~iifvl 199 (202)
.+.+...=+..++.+--+++| |++|++|.++.+.+++.|.
T Consensus 21 ~~~~a~~~~~~r~~~~~r~r~~~~~va~~~~~l~v~~~~~Ia 62 (239)
T COG3736 21 YYKEARNWEEDRVIKLERSRRLAWRVAILFTLLAVAAVIAIA 62 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555 5556666655555444443
No 92
>PHA02650 hypothetical protein; Provisional
Probab=48.16 E-value=25 Score=25.64 Aligned_cols=22 Identities=36% Similarity=0.674 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 028891 179 NRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 179 ~R~l~~~if~iliv~~iifvlf 200 (202)
..|.-+.+++++++++++.++|
T Consensus 44 ~~~~~~~~~ii~i~~v~i~~l~ 65 (81)
T PHA02650 44 VSWFNGQNFIFLIFSLIIVALF 65 (81)
T ss_pred cCCchHHHHHHHHHHHHHHHHH
Confidence 4466677777665555554443
No 93
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=47.86 E-value=6.8 Score=38.32 Aligned_cols=12 Identities=25% Similarity=0.157 Sum_probs=3.6
Q ss_pred HHHHHHHhhcCc
Q 028891 169 LLKYLNSISSNR 180 (202)
Q Consensus 169 L~kA~~~~~s~R 180 (202)
|.++..|.|.-+
T Consensus 537 Ln~~e~YiKWPW 548 (610)
T PF01601_consen 537 LNRYETYIKWPW 548 (610)
T ss_dssp HTTCCCHH----
T ss_pred hcceeEEeehHH
Confidence 334444555443
No 94
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=47.82 E-value=30 Score=21.76 Aligned_cols=13 Identities=23% Similarity=0.856 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 028891 185 KIFFVLIFFLMIF 197 (202)
Q Consensus 185 ~if~iliv~~iif 197 (202)
..|+++|..+|+|
T Consensus 17 llflv~imliif~ 29 (43)
T PF11395_consen 17 LLFLVIIMLIIFW 29 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 95
>PHA03049 IMV membrane protein; Provisional
Probab=47.62 E-value=26 Score=24.72 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028891 183 MIKIFFVLIFFLMIFLF 199 (202)
Q Consensus 183 ~~~if~iliv~~iifvl 199 (202)
+++++||.|+.+|++.+
T Consensus 6 ~l~iICVaIi~lIvYgi 22 (68)
T PHA03049 6 ILVIICVVIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44566666666666654
No 96
>PRK11637 AmiB activator; Provisional
Probab=46.81 E-value=2.4e+02 Score=26.05 Aligned_cols=70 Identities=4% Similarity=0.122 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISS 178 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s 178 (202)
....+++-..++.+++..+..|..=...+...+.+-..-|+.++..++.....+.....+|.+..+..+.
T Consensus 59 ~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 59 KEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455666666666666666666666667777777777777777777777777777766655543
No 97
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=46.80 E-value=1.6e+02 Score=24.00 Aligned_cols=21 Identities=14% Similarity=0.325 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHE 129 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~e 129 (202)
....++.|.+.++.+...++.
T Consensus 53 ~~~~lr~Rydrlr~va~rvQ~ 73 (156)
T PF08372_consen 53 PPDSLRMRYDRLRSVAGRVQN 73 (156)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 456788898888887766554
No 98
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=46.64 E-value=1e+02 Score=21.86 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 028891 153 ENMDDTMANVEGAQGALL 170 (202)
Q Consensus 153 ~Nve~a~~nv~~a~~eL~ 170 (202)
...+..+..|+..+.|+-
T Consensus 19 ~rLd~iEeKvEf~~~Ei~ 36 (70)
T PF04210_consen 19 KRLDEIEEKVEFTNAEIA 36 (70)
T ss_pred HHHHHHHHHHHhHHHHHH
Confidence 334444555555555553
No 99
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=46.09 E-value=16 Score=26.11 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=8.4
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 028891 181 WLMIKIFFVLIFFLMIFL 198 (202)
Q Consensus 181 ~l~~~if~iliv~~iifv 198 (202)
|.-++++++.++++++.+
T Consensus 45 ~~~~~~~ii~ii~v~ii~ 62 (72)
T PF12575_consen 45 NFNWIILIISIIFVLIIV 62 (72)
T ss_pred cchHHHHHHHHHHHHHHH
Confidence 444555555444444333
No 100
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=43.81 E-value=28 Score=27.20 Aligned_cols=7 Identities=43% Similarity=0.244 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 028891 183 MIKIFFV 189 (202)
Q Consensus 183 ~~~if~i 189 (202)
..|||||
T Consensus 67 ~~Ii~gv 73 (122)
T PF01102_consen 67 IGIIFGV 73 (122)
T ss_dssp HHHHHHH
T ss_pred eehhHHH
Confidence 3444443
No 101
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=43.78 E-value=1.6e+02 Score=26.39 Aligned_cols=61 Identities=21% Similarity=0.333 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 174 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~ 174 (202)
++-+.+=.+.++.|++.+ ++||..+..-|.+-.+-|+.|..-++.++..|++-+. -+||.+
T Consensus 17 eEti~qi~~aL~~L~~v~---~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g-s~kAi~ 77 (297)
T PF11945_consen 17 EETILQIADALEYLDKVS---NDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG-SKKAIT 77 (297)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCccEE
Confidence 333344445555555554 5578888899999999999999888888888875433 244443
No 102
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=43.53 E-value=1.1e+02 Score=21.14 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVS 142 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~ 142 (202)
.+|...|..++..+.+..++..+|-..|.
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~ 49 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVR 49 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999988885
No 103
>KOG4433 consensus Tweety transmembrane/cell surface protein [General function prediction only]
Probab=43.50 E-value=1.7e+02 Score=28.35 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=21.6
Q ss_pred HHHHHHhhHHHHHHHHHHHH------HHHHHHHHH---hhcCchhHHHHHHHH
Q 028891 147 IAIRIDENMDDTMANVEGAQ------GALLKYLNS---ISSNRWLMIKIFFVL 190 (202)
Q Consensus 147 ~IdrId~Nve~a~~nv~~a~------~eL~kA~~~---~~s~R~l~~~if~il 190 (202)
.+.+|-+|++.+..+...-. .+|.|..+. --+-||....+++.|
T Consensus 167 ~l~~vq~~~~~a~~~l~~~~~~~~~~~sl~~l~~~~~~yE~~RW~~~v~lL~l 219 (526)
T KOG4433|consen 167 ALRRVQGNAETAVGQLSGLPFWRMVAVSLEKLAEQVDFYESYRWLAYVLLLTL 219 (526)
T ss_pred HHHHHHHHHHHHHHhhhcCcccccCcccHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34455555555555443211 333443333 346789875555543
No 104
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=43.42 E-value=87 Score=20.06 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 028891 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 174 (202)
Q Consensus 120 i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~ 174 (202)
+++-...+..|.....++..+..+=+..|+.=...++....+++.+...+.++.+
T Consensus 7 ~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~ 61 (66)
T smart00397 7 EEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANK 61 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444555544444444443
No 105
>PRK00846 hypothetical protein; Provisional
Probab=42.80 E-value=1.3e+02 Score=21.73 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a 165 (202)
.|..||..+.-......+|...|..|...|+++...+..-...+...
T Consensus 14 Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 14 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666666666666677777778777777776666655555543
No 106
>PF15102 TMEM154: TMEM154 protein family
Probab=42.59 E-value=12 Score=30.22 Aligned_cols=20 Identities=35% Similarity=0.574 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 028891 182 LMIKIFFVLIFFLMIFLFFV 201 (202)
Q Consensus 182 l~~~if~iliv~~iifvlf~ 201 (202)
+|++|=+||++++|++|+|+
T Consensus 59 LmIlIP~VLLvlLLl~vV~l 78 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCL 78 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHh
Confidence 45555546666666666554
No 107
>PF04272 Phospholamban: Phospholamban; InterPro: IPR005984 Phospholamban (PLB) is a small protein (52 amino acids) that regulates the affinity of the cardiac sarcoplasmic reticulum Ca2+-ATPase (SERCA2a) for calcium. PLB is present in cardiac myocytes, in slow-twitch and smooth muscle and is expressed also in aorta endothelial cells in which it could play a role in tissue relaxation. The phosphorylation/dephosphorylation of phospholamban removes and restores, respectively, its inhibitory activity on SERCA2a. It has in fact been shown that phospholamban, in its non-phosphorylated form, binds to SERCA2a and inhibits this pump by lowering its affinity for Ca2+, whereas the phosphorylated form does not exert the inhibition. PLB is phosphorylated at two sites, namely at Ser-16 for a cAMP-dependent phosphokinase and at Thr-17 for a Ca2+/calmodulin-dependent phosphokinase, phosphorylation at Ser-16 being a prerequisite for the phosphorylation at Thr-17. The structure of a 36-amino-acid-long N-terminal fragment of human phospholamban phosphorylated at Ser-16 and Thr-17 and Cys36Ser mutated was determined from nuclear magnetic resonance data. The peptide assumes a conformation characterised by two alpha-helices connected by an irregular strand, which comprises the amino acids from Arg-13 to Pro-21. The proline is in a trans conformation. The two phosphate groups on Ser-16 and Thr-17 are shown to interact preferably with the side chains of Arg-14 and Arg-13, respectively [].; GO: 0005246 calcium channel regulator activity, 0042030 ATPase inhibitor activity, 0006816 calcium ion transport, 0016020 membrane; PDB: 1N7L_A 1FJP_A 1FJK_A 2HYN_C 1ZLL_D 1PLP_A 3O7L_I.
Probab=42.14 E-value=41 Score=22.01 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 028891 186 IFFVLIFFLMIFLF 199 (202)
Q Consensus 186 if~iliv~~iifvl 199 (202)
+++++|+.++|+++
T Consensus 35 fclilicllli~ii 48 (52)
T PF04272_consen 35 FCLILICLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 108
>PRK04406 hypothetical protein; Provisional
Probab=42.08 E-value=1.2e+02 Score=21.45 Aligned_cols=46 Identities=17% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
+.|..||..+.-.-....+|+..|.+|...|++....+..-...+.
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~ 56 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVK 56 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666677777777777777777777766655544443
No 109
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=41.75 E-value=3e+02 Score=25.77 Aligned_cols=24 Identities=25% Similarity=0.136 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Q 028891 143 QQGEIAIRIDENMDDTMANVEGAQ 166 (202)
Q Consensus 143 eQge~IdrId~Nve~a~~nv~~a~ 166 (202)
+=.|-.-.|.+++|..+..|.+--
T Consensus 295 qs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 295 QSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344666778888888888877654
No 110
>PHA03054 IMV membrane protein; Provisional
Probab=41.71 E-value=37 Score=24.22 Aligned_cols=22 Identities=14% Similarity=0.381 Sum_probs=13.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHH
Q 028891 179 NRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 179 ~R~l~~~if~iliv~~iifvlf 200 (202)
+.|.-+.+++++++++++.++|
T Consensus 43 ~~~~~~~~~ii~l~~v~~~~l~ 64 (72)
T PHA03054 43 TGCWGWYWLIIIFFIVLILLLL 64 (72)
T ss_pred cCCchHHHHHHHHHHHHHHHHH
Confidence 4466677777765555554443
No 111
>PHA03164 hypothetical protein; Provisional
Probab=41.65 E-value=41 Score=24.43 Aligned_cols=9 Identities=22% Similarity=0.918 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 028891 191 IFFLMIFLF 199 (202)
Q Consensus 191 iv~~iifvl 199 (202)
++.+|+||+
T Consensus 70 mILfiifvl 78 (88)
T PHA03164 70 MILFIIFVL 78 (88)
T ss_pred HHHHHHHHH
Confidence 344444444
No 112
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=41.59 E-value=1e+02 Score=25.06 Aligned_cols=14 Identities=14% Similarity=-0.121 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 028891 127 IHELGNIFNQLATL 140 (202)
Q Consensus 127 I~eL~~if~~La~m 140 (202)
+..|.++...|+..
T Consensus 107 ~eiL~~lG~~LG~~ 120 (170)
T TIGR02833 107 KEILLQFGKTLGES 120 (170)
T ss_pred HHHHHHHHHHHCcC
Confidence 44445555555544
No 113
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=40.63 E-value=1.1e+02 Score=24.91 Aligned_cols=16 Identities=6% Similarity=-0.153 Sum_probs=7.8
Q ss_pred HHHHHHHHHhhcCchh
Q 028891 167 GALLKYLNSISSNRWL 182 (202)
Q Consensus 167 ~eL~kA~~~~~s~R~l 182 (202)
.++.+|.+..+++.++
T Consensus 139 ~~~~~a~~~~~k~~Km 154 (171)
T PRK08307 139 REEEEAEEEQKKNEKM 154 (171)
T ss_pred HHHHHHHHHHHhCCcH
Confidence 3444555555555444
No 114
>PHA02819 hypothetical protein; Provisional
Probab=40.23 E-value=41 Score=23.95 Aligned_cols=21 Identities=5% Similarity=0.282 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 028891 180 RWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 180 R~l~~~if~iliv~~iifvlf 200 (202)
.|.-+++++++++++++.++|
T Consensus 42 ~~~~~~~~ii~l~~~~~~~~~ 62 (71)
T PHA02819 42 KSFLRYYLIIGLVTIVFVIIF 62 (71)
T ss_pred CChhHHHHHHHHHHHHHHHHH
Confidence 355667777665555554443
No 115
>KOG0570 consensus Transcriptional coactivator [Transcription]
Probab=39.99 E-value=2.3e+02 Score=24.26 Aligned_cols=55 Identities=13% Similarity=0.227 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 122 NVESTIHELGNIFNQLATLVSQ-------------QGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 122 ~Ie~~I~eL~~if~~La~mV~e-------------Qge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
.-++.+.+|..||..|++++.+ ++..|..-.+-|++-+.+.+.++.-|..++...
T Consensus 103 ~~e~Kvedi~tifvnlHHLiNeyRPhQaResLi~lmE~Qi~~~~~~ve~~kk~~~~~~e~l~d~~~tL 170 (223)
T KOG0570|consen 103 MREEKVEDIRTIFVNLHHLINEYRPHQARESLIMLMERQIEQRSDIVEDFKKHLRQVREVLDDQFQTL 170 (223)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4466677777788777777654 555666666667777777777777776655554
No 116
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=39.86 E-value=2.5e+02 Score=24.37 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q 028891 154 NMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIFLF 199 (202)
Q Consensus 154 Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~iliv~~iifvl 199 (202)
++.+..+..++.-++++++.+.-.++-+.++.-|+.++++|++|+|
T Consensus 121 ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~l 166 (230)
T PF03904_consen 121 EIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFAL 166 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3444444555555555555544333434444444444444444444
No 117
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=39.78 E-value=1.2e+02 Score=27.47 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=6.5
Q ss_pred HHHHHHHHHhhHHHHH
Q 028891 144 QGEIAIRIDENMDDTM 159 (202)
Q Consensus 144 Qge~IdrId~Nve~a~ 159 (202)
-||.=-++++-.+...
T Consensus 132 ~GE~sG~L~~~l~~la 147 (399)
T PRK10573 132 TGELTGKLDECCFQLA 147 (399)
T ss_pred HHhhcCCHHHHHHHHH
Confidence 3444344444333333
No 118
>PHA03240 envelope glycoprotein M; Provisional
Probab=39.55 E-value=29 Score=30.03 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=9.8
Q ss_pred CchhHHHHHHHHHHHHHH
Q 028891 179 NRWLMIKIFFVLIFFLMI 196 (202)
Q Consensus 179 ~R~l~~~if~iliv~~ii 196 (202)
.--.+++|++|||+++||
T Consensus 210 aaH~~WIiilIIiIiIII 227 (258)
T PHA03240 210 AAHIAWIFIAIIIIIVII 227 (258)
T ss_pred cchHhHHHHHHHHHHHHH
Confidence 445666666665544333
No 119
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=39.27 E-value=1.6e+02 Score=22.99 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 130 LGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 130 L~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
|.+.|..|.+++..=..-++.+|.....|-.++..+..+|.+..+-
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaKe 47 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAKE 47 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666544445668999999999999999999886643
No 120
>PHA02844 putative transmembrane protein; Provisional
Probab=38.92 E-value=43 Score=24.09 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 028891 181 WLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 181 ~l~~~if~iliv~~iifvlf 200 (202)
|.-+.+++++++++++.++|
T Consensus 45 ~~~~~~~ii~i~~v~~~~~~ 64 (75)
T PHA02844 45 SSSTKIWILTIIFVVFATFL 64 (75)
T ss_pred ChhHHHHHHHHHHHHHHHHH
Confidence 45566666665555554443
No 121
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=38.61 E-value=24 Score=25.40 Aligned_cols=18 Identities=6% Similarity=-0.106 Sum_probs=9.4
Q ss_pred HHHHHHHHHHhhcCchhH
Q 028891 166 QGALLKYLNSISSNRWLM 183 (202)
Q Consensus 166 ~~eL~kA~~~~~s~R~l~ 183 (202)
......|.++.++.|++.
T Consensus 50 ~Gd~~~A~~aS~~Ak~~~ 67 (82)
T PF04505_consen 50 AGDYEGARRASRKAKKWS 67 (82)
T ss_pred CCCHHHHHHHHHHhHHHH
Confidence 344555666655555443
No 122
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=38.60 E-value=1.6e+02 Score=21.66 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=10.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q 028891 107 PLQDSYMQSRAEALQNVESTIH 128 (202)
Q Consensus 107 ~~~~~~iqeR~~~i~~Ie~~I~ 128 (202)
|.-++-+.+-.+.++.|++.+.
T Consensus 8 d~lEekl~~cr~~le~ve~rL~ 29 (85)
T PF15188_consen 8 DGLEEKLAQCRRRLEAVESRLR 29 (85)
T ss_pred hhHHHHHHHHHHHHHHHHHHHc
Confidence 3334444444555555555443
No 123
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=38.26 E-value=1.8e+02 Score=22.17 Aligned_cols=49 Identities=20% Similarity=0.325 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 115 SRAEALQNVESTIH--ELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 115 eR~~~i~~Ie~~I~--eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
.-...+.+||..+. -.++-.+.+..-|..|||.|......+...-.-++
T Consensus 34 ~~~q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~ 84 (102)
T PF01519_consen 34 SNNQRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQ 84 (102)
T ss_dssp -HTTB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456778888888 67888888889999999999988777774443333
No 124
>PF06198 DUF999: Protein of unknown function (DUF999); InterPro: IPR009340 This is a family of conserved Schizosaccharomyces pombe proteins with unknown function.
Probab=38.15 E-value=16 Score=28.39 Aligned_cols=19 Identities=32% Similarity=0.814 Sum_probs=14.8
Q ss_pred hcCchhHHHHHHHHHHHHH
Q 028891 177 SSNRWLMIKIFFVLIFFLM 195 (202)
Q Consensus 177 ~s~R~l~~~if~iliv~~i 195 (202)
++.||-+++|++++++|.+
T Consensus 83 ~~~rw~lliiw~ii~v~~i 101 (143)
T PF06198_consen 83 SKSRWPLLIIWSIIIVFAI 101 (143)
T ss_pred cccccHHHHHHHHHHheee
Confidence 4578998899998887753
No 125
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=37.91 E-value=1.9e+02 Score=23.52 Aligned_cols=26 Identities=15% Similarity=-0.142 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHH
Q 028891 127 IHELGNIFNQLATL-VSQQGEIAIRID 152 (202)
Q Consensus 127 I~eL~~if~~La~m-V~eQge~IdrId 152 (202)
+..|.++...|+.. +..|...|+-..
T Consensus 108 ~eiL~~lg~~LG~~D~e~Q~k~i~L~~ 134 (171)
T PRK08307 108 IEILLQFGKTLGQSDREGQQKHIRLAL 134 (171)
T ss_pred HHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 44455555556554 444544444433
No 126
>COG4499 Predicted membrane protein [Function unknown]
Probab=37.78 E-value=45 Score=31.26 Aligned_cols=19 Identities=16% Similarity=0.343 Sum_probs=10.3
Q ss_pred HHHHHhhcCchhHHHHHHH
Q 028891 171 KYLNSISSNRWLMIKIFFV 189 (202)
Q Consensus 171 kA~~~~~s~R~l~~~if~i 189 (202)
|-+.+..+.||-+.++|++
T Consensus 207 kn~a~VpK~k~~ifk~~gi 225 (434)
T COG4499 207 KNYAFVPKKKYTIFKYFGI 225 (434)
T ss_pred cceeecccccceehhhHHH
Confidence 3334456666666555554
No 127
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=37.67 E-value=1.3e+02 Score=20.43 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
.|++|...|.+|+.= |+.|...|......+..|..|-.+|..+
T Consensus 4 kid~Ls~dVq~L~~k--------------vdqLs~dv~~lr~~v~~ak~EAaRAN~R 46 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSK--------------VDQLSSDVNALRADVQAAKEEAARANQR 46 (56)
T ss_dssp HHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555543 3444444444444555555555554443
No 128
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=37.55 E-value=2.2e+02 Score=23.05 Aligned_cols=43 Identities=16% Similarity=0.232 Sum_probs=21.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc--CchhHHHHHHH
Q 028891 147 IAIRIDENMDDTMANVEGAQGALLKYLNSISS--NRWLMIKIFFV 189 (202)
Q Consensus 147 ~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s--~R~l~~~if~i 189 (202)
....+|..+.+....++.-...|+......|. -||++-.++++
T Consensus 121 e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~~g~i~~~ 165 (177)
T PF07798_consen 121 EQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWLVGVIFGC 165 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555555554432 35665444443
No 129
>PHA03164 hypothetical protein; Provisional
Probab=37.46 E-value=29 Score=25.22 Aligned_cols=16 Identities=19% Similarity=0.528 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028891 185 KIFFVLIFFLMIFLFF 200 (202)
Q Consensus 185 ~if~iliv~~iifvlf 200 (202)
+++..|++-.|+|++|
T Consensus 61 lvLtgLaIamILfiif 76 (88)
T PHA03164 61 LVLTGLAIAMILFIIF 76 (88)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444445444
No 130
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=37.41 E-value=2.1e+02 Score=23.18 Aligned_cols=23 Identities=13% Similarity=0.099 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHhhcCchhH
Q 028891 161 NVEGAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 161 nv~~a~~eL~kA~~~~~s~R~l~ 183 (202)
+++.=..++.+|....+++.+++
T Consensus 132 ~~~~L~~~~~~a~~~~~k~~Kmy 154 (170)
T TIGR02833 132 TLEHLERQLTEAEDEQKKNEKMY 154 (170)
T ss_pred HHHHHHHHHHHHHHHHHhcccHH
Confidence 33333444555555555555443
No 131
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=37.28 E-value=1.3e+02 Score=21.66 Aligned_cols=32 Identities=6% Similarity=0.181 Sum_probs=22.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 145 GEIAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 145 ge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
.-.+++++..++.+...+..|..+=.+|..+.
T Consensus 38 nAkv~qLe~dv~a~~~~~qAAk~eaarAn~rl 69 (78)
T COG4238 38 NAKVDQLENDVNAMRSDVQAAKDEAARANQRL 69 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 34567777788888888887777776666554
No 132
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=37.01 E-value=50 Score=22.64 Aligned_cols=15 Identities=20% Similarity=0.658 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHH
Q 028891 186 IFFVLIFFLMIFLFF 200 (202)
Q Consensus 186 if~iliv~~iifvlf 200 (202)
+++++++|++.|-+|
T Consensus 12 Vi~l~vl~~~~Ftl~ 26 (58)
T PF13314_consen 12 VIILIVLFGASFTLF 26 (58)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444445555444
No 133
>PF00429 TLV_coat: ENV polyprotein (coat polyprotein); InterPro: IPR018154 Enveloped viruses such as Human immunodeficiency virus 1, influenza virus, and Ebola virus sp. express a surface glycoprotein that mediates both cell attachment and fusion of viral and cellular membranes. The ENV polyprotein (coat polyprotein) usually contains two coat proteins which differ depending on the source. The structure of a number of the ENV polyprotein domains have been determined: The crystal structure of an extraviral segment of the Moloney murine leukemia virus (MoMuLV) transmembrane (TM) subunit has been determined to 1.7-A resolution. This segment contains a trimeric coiled coil, with a hydrophobic cluster at its base and a strand that packs in an antiparallel orientation against the coiled coil. This structure serves as a model for a wide range of viral fusion proteins; key residues in this structure are conserved among C- and D-type retroviruses and the filovirus ebola []. An essential step in retrovirus infection is the binding of the virus to its receptor on a target cell. The structure of the receptor-binding domain of the envelope glycoprotein from Friend murine leukemia virus (F-MuLV) has been determined determined to 2.0-A resolution. The core of the domain is an antiparallel beta sandwich, with two interstrand loops forming a helical subdomain atop the sandwich. The residues in the helical region, but not in the beta sandwich, are highly variable among mammalian C-type retroviruses with distinct tropisms, indicating that the helical subdomain determines the receptor specificity of the virus []. ; PDB: 1LCS_B 1MOF_A 1XNL_A 2XZ3_A 1AOL_A 1Y4M_C.
Probab=36.96 E-value=1.8e+02 Score=28.42 Aligned_cols=38 Identities=26% Similarity=0.267 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAI 149 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~Id 149 (202)
+..+=+..++.++++|..|.+=..-|+.+|-+=.--+|
T Consensus 429 L~~~~~~d~~~~~~~i~~l~~~~~sl~~~v~qnr~~lD 466 (561)
T PF00429_consen 429 LSNALEEDLQALEDSISALQEQLTSLAEVVLQNRRALD 466 (561)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence 44445566777777777777777777777776665555
No 134
>PHA02689 ORF051 putative membrane protein; Provisional
Probab=36.15 E-value=45 Score=26.33 Aligned_cols=23 Identities=22% Similarity=0.593 Sum_probs=15.9
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 028891 178 SNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 178 s~R~l~~~if~iliv~~iifvlf 200 (202)
+.|...+++|=++++++++|+.|
T Consensus 27 ~~kY~~Iv~FEi~va~~L~~~FF 49 (128)
T PHA02689 27 AESYLAIAVLELLLALALALVFF 49 (128)
T ss_pred cchhHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777765
No 135
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=36.05 E-value=44 Score=24.30 Aligned_cols=7 Identities=29% Similarity=0.060 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 028891 169 LLKYLNS 175 (202)
Q Consensus 169 L~kA~~~ 175 (202)
++|+.++
T Consensus 5 ~kK~K~k 11 (96)
T PF13800_consen 5 LKKAKRK 11 (96)
T ss_pred HHHHHHH
Confidence 3344433
No 136
>COG5346 Predicted membrane protein [Function unknown]
Probab=35.82 E-value=2.2e+02 Score=22.59 Aligned_cols=9 Identities=22% Similarity=0.438 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 028891 185 KIFFVLIFF 193 (202)
Q Consensus 185 ~if~iliv~ 193 (202)
.||++.+|+
T Consensus 95 liFgi~LVv 103 (136)
T COG5346 95 LIFGIFLVV 103 (136)
T ss_pred HHHHHHHHH
Confidence 445544433
No 137
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=35.19 E-value=47 Score=30.58 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=17.8
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHH
Q 028891 169 LLKYLNSISSNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 169 L~kA~~~~~s~R~l~~~if~iliv~~iifvlf 200 (202)
|....+...++||+++.++++.+++.+++.++
T Consensus 29 l~~ll~~L~r~k~~Il~~~~~~~~~g~~ya~~ 60 (377)
T PRK10381 29 LFELISVLWKAKKTIIAITFAFACAGLLISFI 60 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444455666777766655555555555543
No 138
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=34.85 E-value=37 Score=25.10 Aligned_cols=11 Identities=18% Similarity=0.588 Sum_probs=5.3
Q ss_pred hcCchhHHHHH
Q 028891 177 SSNRWLMIKIF 187 (202)
Q Consensus 177 ~s~R~l~~~if 187 (202)
|.+|..|.|.|
T Consensus 32 ka~kysIVI~F 42 (90)
T PF15183_consen 32 KANKYSIVIAF 42 (90)
T ss_pred cccceeeehhH
Confidence 45554444433
No 139
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=34.44 E-value=2.3e+02 Score=22.25 Aligned_cols=9 Identities=33% Similarity=0.401 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 028891 167 GALLKYLNS 175 (202)
Q Consensus 167 ~eL~kA~~~ 175 (202)
++|..+.+.
T Consensus 61 Kelle~Lk~ 69 (121)
T PF03310_consen 61 KELLEALKK 69 (121)
T ss_dssp HHHHHHHT-
T ss_pred HHHHHHHhc
Confidence 444444433
No 140
>PHA02967 hypothetical protein; Provisional
Probab=33.85 E-value=49 Score=26.11 Aligned_cols=23 Identities=30% Similarity=0.755 Sum_probs=15.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 028891 178 SNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 178 s~R~l~~~if~iliv~~iifvlf 200 (202)
..|...+++|=++++++++|+.|
T Consensus 24 ~~kY~~Iv~FEi~val~L~~~FF 46 (128)
T PHA02967 24 PNKYFYILVFEVIVALIIINFFF 46 (128)
T ss_pred cccchhHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777765
No 141
>PF13253 DUF4044: Protein of unknown function (DUF4044)
Probab=33.68 E-value=35 Score=21.03 Aligned_cols=18 Identities=11% Similarity=0.189 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028891 183 MIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 183 ~~~if~iliv~~iifvlf 200 (202)
+.+++.++++++.+.-+|
T Consensus 12 iT~v~v~lM~i~tvg~v~ 29 (35)
T PF13253_consen 12 ITMVVVWLMLILTVGSVV 29 (35)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555554444
No 142
>PRK04406 hypothetical protein; Provisional
Probab=33.66 E-value=1.7e+02 Score=20.69 Aligned_cols=51 Identities=16% Similarity=0.209 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 028891 124 ESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 174 (202)
Q Consensus 124 e~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~ 174 (202)
++++.++.+=+.+|-..+.-|+.+|+.+..-|..-...+..=.++|....+
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666777777777777777777766666555555554433
No 143
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=33.46 E-value=1.2e+02 Score=21.00 Aligned_cols=12 Identities=17% Similarity=-0.061 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 028891 164 GAQGALLKYLNS 175 (202)
Q Consensus 164 ~a~~eL~kA~~~ 175 (202)
.|..-|.+--++
T Consensus 10 TA~~FL~RvGr~ 21 (60)
T PF06072_consen 10 TATEFLRRVGRQ 21 (60)
T ss_pred cHHHHHHHHhHH
Confidence 344444443333
No 144
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.33 E-value=2.3e+02 Score=24.25 Aligned_cols=18 Identities=33% Similarity=0.486 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELG 131 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~ 131 (202)
.+|+.+....|..+.+++
T Consensus 127 ~~~~~~~~~mena~~~I~ 144 (209)
T KOG1693|consen 127 SNRDTALTQMENAIVEIH 144 (209)
T ss_pred cccchHHHHHHHHHHHHH
Confidence 345555666666665543
No 145
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=33.22 E-value=41 Score=30.43 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=10.6
Q ss_pred HHhhcCchhHHHHHHHHHHHHH
Q 028891 174 NSISSNRWLMIKIFFVLIFFLM 195 (202)
Q Consensus 174 ~~~~s~R~l~~~if~iliv~~i 195 (202)
++.+..+|++.+.++++++++.
T Consensus 105 ~~~~~~~~~~~~~~lv~~vvl~ 126 (331)
T PRK10856 105 RRKKRDGWLMTFTWLVLFVVIG 126 (331)
T ss_pred cccccCCchHHHHHHHHHHHHH
Confidence 3344555766554444443333
No 146
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=32.96 E-value=1.5e+02 Score=25.64 Aligned_cols=14 Identities=7% Similarity=0.047 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHH
Q 028891 185 KIFFVLIFFLMIFL 198 (202)
Q Consensus 185 ~if~iliv~~iifv 198 (202)
++++.+||+.|.||
T Consensus 204 l~iG~iIi~tLtYv 217 (232)
T PF09577_consen 204 LSIGGIIIATLTYV 217 (232)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555556555554
No 147
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=32.78 E-value=72 Score=27.82 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=25.4
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHh-hcCchhHHHHHHH
Q 028891 150 RIDENMDDTMANVEGAQGALLKYLNSI-SSNRWLMIKIFFV 189 (202)
Q Consensus 150 rId~Nve~a~~nv~~a~~eL~kA~~~~-~s~R~l~~~if~i 189 (202)
+|-..+++=...++.|+++|.+-.+.. +-+||+..+..++
T Consensus 94 ~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~ 134 (250)
T COG2966 94 RISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGL 134 (250)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHH
Confidence 333345555667888888888877554 4567776544443
No 148
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=32.78 E-value=96 Score=21.39 Aligned_cols=6 Identities=17% Similarity=0.080 Sum_probs=2.9
Q ss_pred hcCchh
Q 028891 177 SSNRWL 182 (202)
Q Consensus 177 ~s~R~l 182 (202)
+++||.
T Consensus 28 RrRrc~ 33 (60)
T PF06072_consen 28 RRRRCR 33 (60)
T ss_pred HHHHHH
Confidence 444554
No 149
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=32.69 E-value=1.4e+02 Score=19.38 Aligned_cols=53 Identities=11% Similarity=0.260 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 166 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~ 166 (202)
..=...+..+..-..+++.+-.+=+.+|..=...+++...++..+...+.++.
T Consensus 7 ~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~ 59 (63)
T PF05739_consen 7 DELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKAL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444455555555555555555555555555443
No 150
>PRK10884 SH3 domain-containing protein; Provisional
Probab=32.68 E-value=3.1e+02 Score=23.20 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028891 132 NIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 171 (202)
Q Consensus 132 ~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~k 171 (202)
+.-.++..-+.+-...+..++..-......+..+..++..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~ 157 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA 157 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444445555555555555555555555543
No 151
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=32.30 E-value=1.1e+02 Score=22.53 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc-hhHH---HHHHHHHHHHHHHH
Q 028891 158 TMANVEGAQGALLKYLNSISSNR-WLMI---KIFFVLIFFLMIFL 198 (202)
Q Consensus 158 a~~nv~~a~~eL~kA~~~~~s~R-~l~~---~if~iliv~~iifv 198 (202)
+..-+--+..-+..|.+.++.++ |-=+ .+.+++++++++|.
T Consensus 36 a~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwL 80 (87)
T PF11190_consen 36 AAAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWL 80 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHH
Confidence 44444455556666766665443 4333 34444444444444
No 152
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=32.26 E-value=1.8e+02 Score=23.49 Aligned_cols=11 Identities=18% Similarity=-0.037 Sum_probs=4.8
Q ss_pred HHHHHHHHHHH
Q 028891 127 IHELGNIFNQL 137 (202)
Q Consensus 127 I~eL~~if~~L 137 (202)
...|.++...|
T Consensus 107 ~e~L~~lg~~L 117 (170)
T PF09548_consen 107 KEILLELGKSL 117 (170)
T ss_pred HHHHHHHHHHH
Confidence 33444444444
No 153
>TIGR01294 P_lamban phospholamban. This model represents the short (52 residue) transmembrane phosphoprotein phospholamban. Phospholamban, in its unphosphorylated form, inhibits SERCA2, the cardiac sarcoplasmic reticulum Ca-ATPase.
Probab=32.00 E-value=72 Score=20.90 Aligned_cols=7 Identities=57% Similarity=0.951 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 028891 190 LIFFLMI 196 (202)
Q Consensus 190 liv~~ii 196 (202)
+|+.++|
T Consensus 39 licllli 45 (52)
T TIGR01294 39 LICLLLI 45 (52)
T ss_pred HHHHHHH
Confidence 3333333
No 154
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=31.98 E-value=1.9e+02 Score=20.56 Aligned_cols=12 Identities=25% Similarity=0.257 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 028891 158 TMANVEGAQGAL 169 (202)
Q Consensus 158 a~~nv~~a~~eL 169 (202)
.++.|+..+.|+
T Consensus 24 iEeKVEf~~~E~ 35 (70)
T TIGR01149 24 IEEKVEFVNGEV 35 (70)
T ss_pred HHHHHHHHHHHH
Confidence 344444445554
No 155
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=31.54 E-value=2.3e+02 Score=21.51 Aligned_cols=63 Identities=11% Similarity=0.142 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGE-------IAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge-------~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
++|-+++.+|++.|..|-+.+...-..+..... .-+.++.+...--.-++....+|.+-.++-
T Consensus 2 ~eRL~~L~~Idk~I~~lL~~A~~ai~~Ls~~~~~~~~~~~~k~~f~~~~~~f~~~L~~V~~~Lr~qI~~L 71 (117)
T PF10280_consen 2 AERLQQLNEIDKKIVSLLQHAGQAIQELSNPKSPDQDPESSKEAFESATSEFFSTLSSVEVELRRQIKYL 71 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999887777665544444333 566777777777777777777777765553
No 156
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=31.23 E-value=44 Score=21.98 Aligned_cols=16 Identities=38% Similarity=0.908 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 028891 184 IKIFFVLIFFLMIFLF 199 (202)
Q Consensus 184 ~~if~iliv~~iifvl 199 (202)
++++-++|+|+.+|++
T Consensus 5 lKFvY~mIiflslflv 20 (54)
T PF07127_consen 5 LKFVYAMIIFLSLFLV 20 (54)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 4555556666655554
No 157
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=31.17 E-value=1.6e+02 Score=23.78 Aligned_cols=13 Identities=8% Similarity=-0.046 Sum_probs=5.3
Q ss_pred HHHHHHHHhhcCc
Q 028891 168 ALLKYLNSISSNR 180 (202)
Q Consensus 168 eL~kA~~~~~s~R 180 (202)
++..|.+..+++.
T Consensus 139 ~~~~a~~~~~~~~ 151 (170)
T PF09548_consen 139 QLEEAREEAKKKG 151 (170)
T ss_pred HHHHHHHHHHhcc
Confidence 3334444444443
No 158
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=30.85 E-value=2e+02 Score=26.00 Aligned_cols=19 Identities=16% Similarity=0.244 Sum_probs=7.5
Q ss_pred HHHHHHHHHhhHHHHHHHH
Q 028891 144 QGEIAIRIDENMDDTMANV 162 (202)
Q Consensus 144 Qge~IdrId~Nve~a~~nv 162 (202)
-||.=-++++..+....+.
T Consensus 134 ~GE~sG~L~~~L~~~a~~~ 152 (399)
T TIGR02120 134 AGEASGALDAVLERLADYL 152 (399)
T ss_pred HHhhcCCHHHHHHHHHHHH
Confidence 3333334444444433333
No 159
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=30.80 E-value=55 Score=26.22 Aligned_cols=9 Identities=11% Similarity=0.095 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 028891 191 IFFLMIFLF 199 (202)
Q Consensus 191 iv~~iifvl 199 (202)
++++.||++
T Consensus 131 ~i~~giy~~ 139 (145)
T PF10661_consen 131 AICGGIYVV 139 (145)
T ss_pred HHHHHHHHH
Confidence 333444443
No 160
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=30.75 E-value=62 Score=33.14 Aligned_cols=19 Identities=32% Similarity=0.515 Sum_probs=10.1
Q ss_pred HHHHHh---hcCchhHHHHHHH
Q 028891 171 KYLNSI---SSNRWLMIKIFFV 189 (202)
Q Consensus 171 kA~~~~---~s~R~l~~~if~i 189 (202)
||.-|. .+.|-+++++|++
T Consensus 48 kY~~Y~~CATSTRim~Wilf~c 69 (981)
T PF03408_consen 48 KYLCYLCCATSTRIMAWILFVC 69 (981)
T ss_pred HHHHHHHHcchhHHHHHHHHHH
Confidence 555553 5677555444433
No 161
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=30.69 E-value=42 Score=25.04 Aligned_cols=11 Identities=27% Similarity=0.688 Sum_probs=4.3
Q ss_pred HHHHHHHHHHH
Q 028891 190 LIFFLMIFLFF 200 (202)
Q Consensus 190 liv~~iifvlf 200 (202)
++.|++++|++
T Consensus 68 lls~v~IlVil 78 (101)
T PF06024_consen 68 LLSFVCILVIL 78 (101)
T ss_pred HHHHHHHHHHH
Confidence 33334444433
No 162
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=30.62 E-value=30 Score=31.04 Aligned_cols=9 Identities=33% Similarity=0.512 Sum_probs=4.0
Q ss_pred HHHHHHhhh
Q 028891 11 LTMRTENLK 19 (202)
Q Consensus 11 Le~Rt~n~k 19 (202)
++.|..+.|
T Consensus 74 ~~~rk~aVk 82 (305)
T PF04639_consen 74 LQTRKNAVK 82 (305)
T ss_pred HHHHHHHhh
Confidence 444444444
No 163
>COG4640 Predicted membrane protein [Function unknown]
Probab=30.07 E-value=68 Score=30.22 Aligned_cols=7 Identities=14% Similarity=0.003 Sum_probs=2.9
Q ss_pred HHHHHHH
Q 028891 165 AQGALLK 171 (202)
Q Consensus 165 a~~eL~k 171 (202)
|++++..
T Consensus 32 an~~tn~ 38 (465)
T COG4640 32 ANKSTNE 38 (465)
T ss_pred hhHHHHH
Confidence 4444443
No 164
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=29.76 E-value=74 Score=22.61 Aligned_cols=20 Identities=5% Similarity=0.037 Sum_probs=12.4
Q ss_pred HHHHHHHhhHHHHHHHHHHH
Q 028891 146 EIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 146 e~IdrId~Nve~a~~nv~~a 165 (202)
..++.||.+.....-.....
T Consensus 9 r~L~eiEr~L~~~DP~fa~~ 28 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAAR 28 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHH
Confidence 37778887776655544433
No 165
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=29.69 E-value=47 Score=34.65 Aligned_cols=6 Identities=33% Similarity=1.226 Sum_probs=2.6
Q ss_pred chhHHH
Q 028891 180 RWLMIK 185 (202)
Q Consensus 180 R~l~~~ 185 (202)
||.++.
T Consensus 1071 r~~il~ 1076 (1105)
T KOG1326|consen 1071 RWYILL 1076 (1105)
T ss_pred HHHHHH
Confidence 444433
No 166
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=29.14 E-value=1.4e+02 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.146 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh-cCchhHHH
Q 028891 155 MDDTMANVEGAQGALLKYLNSIS-SNRWLMIK 185 (202)
Q Consensus 155 ve~a~~nv~~a~~eL~kA~~~~~-s~R~l~~~ 185 (202)
+.+-...++++.++|++-.+... -++|+.++
T Consensus 77 ~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~~l 108 (193)
T PF06738_consen 77 IVAGQLSLEEAIERLDEIDREPPRYPPWLVIL 108 (193)
T ss_pred HhcCCCCHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 33345567788888887777763 34455433
No 167
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=28.87 E-value=2.3e+02 Score=20.53 Aligned_cols=13 Identities=15% Similarity=0.189 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHH
Q 028891 157 DTMANVEGAQGAL 169 (202)
Q Consensus 157 ~a~~nv~~a~~eL 169 (202)
+.++.|+..+.|+
T Consensus 26 ~iEeKVEftn~Ei 38 (77)
T PRK01026 26 EIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444455554
No 168
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=28.60 E-value=88 Score=18.75 Aligned_cols=16 Identities=13% Similarity=0.380 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 028891 186 IFFVLIFFLMIFLFFV 201 (202)
Q Consensus 186 if~iliv~~iifvlf~ 201 (202)
++++..+.+++|.+|+
T Consensus 8 fll~~tlgiiFFAIfF 23 (31)
T PRK11875 8 LILTLALVTLFFAIAF 23 (31)
T ss_pred HHHHHHHHHHHHhhhc
Confidence 3344444455555543
No 169
>PHA02849 putative transmembrane protein; Provisional
Probab=28.29 E-value=73 Score=23.20 Aligned_cols=16 Identities=25% Similarity=0.737 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 028891 184 IKIFFVLIFFLMIFLF 199 (202)
Q Consensus 184 ~~if~iliv~~iifvl 199 (202)
++..+++++.|++|++
T Consensus 19 vi~v~v~vI~i~~flL 34 (82)
T PHA02849 19 VILVFVLVISFLAFML 34 (82)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444444
No 170
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=28.24 E-value=2.4e+02 Score=26.57 Aligned_cols=48 Identities=13% Similarity=0.176 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 128 HELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 128 ~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
.|++.|...+..|+.+=..++..++..+++....++..++.|.-.++.
T Consensus 178 dE~g~L~~~~n~M~~~L~~~~~~l~~~~~~~t~~l~~~~~~l~~ly~~ 225 (569)
T PRK10600 178 DEMAMLGTALNNMSAELAESYAVLEQRVQEKTAGLEQKNQILSFLWQA 225 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888999999999999999999999999999999988754433
No 171
>PF05227 CHASE3: CHASE3 domain; InterPro: IPR007891 CHASE3 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in bacteria. Specifically, CHASE3 domains are found in histidine kinases, adenylate cyclases, methyl-accepting chemotaxis proteins and predicted diguanylate cyclases/phosphodiesterases. Environmental factors that are recognised by CHASE3 domains are not known at this time [].; PDB: 3VA9_A.
Probab=28.12 E-value=2.5e+02 Score=20.69 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=34.9
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 105 MVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 105 ~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
++..+..|+..-.+....+...+.+|..+..+-. +|-+.|+.|...++.-...++
T Consensus 33 lltgd~~~l~~y~~~~~~~~~~l~~L~~l~~~~p----~q~~~l~~l~~~~~~~~~~~~ 87 (138)
T PF05227_consen 33 LLTGDPEFLEPYQEARARLEKALAQLRQLVQDNP----EQQERLDQLEELIDQWRELLE 87 (138)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHHHHHHTTT-H----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHhhhchHHHHHHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777777777776654322 677778888777766654333
No 172
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=28.11 E-value=68 Score=25.71 Aligned_cols=25 Identities=12% Similarity=-0.077 Sum_probs=14.7
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhC
Q 028891 178 SNRWLMIKIFFVLIFFLMIFLFFVA 202 (202)
Q Consensus 178 s~R~l~~~if~iliv~~iifvlf~a 202 (202)
+..|.+++.++..+|++|+++++++
T Consensus 115 ~~~~~~i~~~i~g~ll~i~~giy~~ 139 (145)
T PF10661_consen 115 KPISPTILLSIGGILLAICGGIYVV 139 (145)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445554555555677777777653
No 173
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=28.08 E-value=1.2e+02 Score=20.93 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q 028891 163 EGAQGALLKYLNSISSNRWLMIKIFFVLIFFL 194 (202)
Q Consensus 163 ~~a~~eL~kA~~~~~s~R~l~~~if~iliv~~ 194 (202)
++-.+-|.|-.++++..+-+++.+|++|++..
T Consensus 27 e~C~eil~ker~R~r~~~~~~~li~aLi~v~v 58 (64)
T COG4068 27 EECGEILNKERKRQRNFMILMFLILALILVMV 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566777778888866666665555544
No 174
>PF14715 FixP_N: N-terminal domain of cytochrome oxidase-cbb3, FixP
Probab=27.94 E-value=82 Score=20.82 Aligned_cols=19 Identities=32% Similarity=0.772 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 028891 180 RWLMIKIFFVLIFFLMIFLF 199 (202)
Q Consensus 180 R~l~~~if~iliv~~iifvl 199 (202)
||++ .+|.+.|+|.+++.+
T Consensus 22 ~ww~-~~f~~tivfa~~Y~~ 40 (51)
T PF14715_consen 22 RWWL-WLFYGTIVFAVGYLV 40 (51)
T ss_pred HHHH-HHHHHHHHHHHHHHH
Confidence 4555 444455555555544
No 175
>PF10960 DUF2762: Protein of unknown function (DUF2762); InterPro: IPR024405 BhlA is a SP-beta prophage-derived protein found in Bacillus subtilis [, ] and other Bacilli. A related protein, UviB, has also been described in Clostridia, where it is believed to be involved in bacteriocin secretion or immunity [, ].
Probab=27.88 E-value=51 Score=23.35 Aligned_cols=14 Identities=36% Similarity=0.892 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHH
Q 028891 186 IFFVLIFFLMIFLF 199 (202)
Q Consensus 186 if~iliv~~iifvl 199 (202)
+|++|+|+++++++
T Consensus 14 ~fA~LFv~Ll~yvl 27 (71)
T PF10960_consen 14 IFAVLFVWLLFYVL 27 (71)
T ss_pred cHHHHHHHHHHHHH
Confidence 45666666666654
No 176
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=27.37 E-value=3.4 Score=30.15 Aligned_cols=8 Identities=38% Similarity=1.049 Sum_probs=0.0
Q ss_pred hcCchhHH
Q 028891 177 SSNRWLMI 184 (202)
Q Consensus 177 ~s~R~l~~ 184 (202)
+++||+.|
T Consensus 63 kKrrwlwL 70 (81)
T PF14812_consen 63 KKRRWLWL 70 (81)
T ss_dssp --------
T ss_pred ccchhHHH
Confidence 44556543
No 177
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=27.19 E-value=4.5e+02 Score=23.41 Aligned_cols=62 Identities=8% Similarity=0.080 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 180 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R 180 (202)
++..+...+.++..-...+...+.+-..-+..++..++...........++..+.+....+|
T Consensus 210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444444444444455555566666777777888888888888887877777776654333
No 178
>PHA02690 hypothetical protein; Provisional
Probab=26.78 E-value=2.6e+02 Score=20.49 Aligned_cols=21 Identities=19% Similarity=0.023 Sum_probs=8.8
Q ss_pred HHHHHhhHHHHHHHHHHHHHH
Q 028891 148 AIRIDENMDDTMANVEGAQGA 168 (202)
Q Consensus 148 IdrId~Nve~a~~nv~~a~~e 168 (202)
++.|++-.-....|++.-+..
T Consensus 10 V~gi~~Ra~adrrYLeAIqrh 30 (90)
T PHA02690 10 VDGIVERARADRRYLEAIQRH 30 (90)
T ss_pred HHHHHHHHHhhhHHHHHHHHH
Confidence 444444444444444444333
No 179
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=26.68 E-value=61 Score=29.42 Aligned_cols=20 Identities=25% Similarity=0.898 Sum_probs=9.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 028891 181 WLMIKIFFVLIFFLMIFLFFV 201 (202)
Q Consensus 181 ~l~~~if~iliv~~iifvlf~ 201 (202)
|++++ ++++++++||+-+|+
T Consensus 158 ~lf~i-i~l~vla~ivY~~~~ 177 (318)
T PF06682_consen 158 WLFWI-IFLLVLAFIVYSLFL 177 (318)
T ss_pred hhhhH-HHHHHHHHHHHHHHh
Confidence 44433 344455555555554
No 180
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=26.62 E-value=3.5e+02 Score=21.89 Aligned_cols=56 Identities=11% Similarity=0.210 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 120 i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
.+.++....+++.+...++.+|.-..-..+.+.+++..+...++.-...|..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~vsdiv~~~~~~~~~~~~~~~~~~~~l~~~lekL~~fd~~ 167 (204)
T PF04740_consen 112 KEQIEDLQDEINSILSSVSDIVSLPKPSSSSFIDSLEKAKKKLQETLEKLRAFDQQ 167 (204)
T ss_pred HHHHHHHHHHHhhhccchHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555666777777777777777777777878877777777766655543
No 181
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=26.51 E-value=4.5e+02 Score=23.21 Aligned_cols=55 Identities=11% Similarity=0.289 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 166 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~ 166 (202)
.+.+=...+..|...+.++.++..+++..+.+|...++.|..+++....-++...
T Consensus 325 ~~~~~~~~~~~i~~~i~~i~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 379 (408)
T COG0840 325 LVEETGSSLGEIAAAIEEVSQLISEIAAATEEQTAVLEEINASIEELDDVTQENA 379 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445688999999999999999999999999999998888888777666665
No 182
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=26.35 E-value=79 Score=23.01 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=8.8
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 028891 179 NRWLMIKIFFVLIFFLMIFLF 199 (202)
Q Consensus 179 ~R~l~~~if~iliv~~iifvl 199 (202)
+|++.+.++++.+++.+.|++
T Consensus 14 r~r~~~~l~~i~l~~y~~~~l 34 (91)
T PF04341_consen 14 RRRLAWPLSAIFLVLYFGFVL 34 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444
No 183
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=26.32 E-value=1.4e+02 Score=25.15 Aligned_cols=13 Identities=8% Similarity=0.263 Sum_probs=5.0
Q ss_pred hhHHHHHHHHHHH
Q 028891 181 WLMIKIFFVLIFF 193 (202)
Q Consensus 181 ~l~~~if~iliv~ 193 (202)
|.++.+.++++++
T Consensus 41 w~~va~~~l~i~~ 53 (228)
T PRK13872 41 WRLMAFGCLALSA 53 (228)
T ss_pred HHHHHHHHHHHHH
Confidence 5533333333333
No 184
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=26.26 E-value=3.8e+02 Score=24.18 Aligned_cols=30 Identities=17% Similarity=0.289 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 028891 133 IFNQLATLVSQQGEIAIRIDENMDDTMANV 162 (202)
Q Consensus 133 if~~La~mV~eQge~IdrId~Nve~a~~nv 162 (202)
+|..+....-.-||.-.++|.-.+...+..
T Consensus 325 ~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~ 354 (399)
T TIGR02120 325 LFPPLLVHMIASGEKSGQLETMLERAADNQ 354 (399)
T ss_pred CCCHHHHHHHHHHhhhccHHHHHHHHHHHH
Confidence 344444444445665555555555544443
No 185
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.07 E-value=4.7e+02 Score=23.21 Aligned_cols=62 Identities=11% Similarity=0.217 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 170 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~ 170 (202)
++..+.+=..+..+|+..|..|..=..++..-+.+..+-++....++......+......|+
T Consensus 36 ~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 36 QDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666666666666666666666666666665555554
No 186
>PRK10869 recombination and repair protein; Provisional
Probab=25.29 E-value=4.7e+02 Score=25.27 Aligned_cols=75 Identities=9% Similarity=0.085 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHH
Q 028891 110 DSYMQSRAEALQNVESTIH-ELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIK 185 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~-eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~ 185 (202)
.+.+++|-..+..+.+.-. .+.++... ...+.++=+.++..+...+.-...++.+..++.++....+..|+-...
T Consensus 298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~-~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~ 373 (553)
T PRK10869 298 LAELEQRLSKQISLARKHHVSPEELPQH-HQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAK 373 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777776666444 33333222 223344456677777788888888888888888877776666654433
No 187
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=25.04 E-value=2e+02 Score=18.60 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 122 NVESTIHELGNIFNQLATLVSQQGEIAI 149 (202)
Q Consensus 122 ~Ie~~I~eL~~if~~La~mV~eQge~Id 149 (202)
.|-+.+.+++++..+|-+.+.+|-.=+.
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~~ 32 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKETR 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888887754433
No 188
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=24.97 E-value=2.7e+02 Score=20.02 Aligned_cols=15 Identities=13% Similarity=-0.015 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHH
Q 028891 136 QLATLVSQQGEIAIR 150 (202)
Q Consensus 136 ~La~mV~eQge~Idr 150 (202)
.|+..|..=...++.
T Consensus 16 ~m~~ev~~s~~t~~~ 30 (92)
T PF03908_consen 16 MMAQEVERSELTLQT 30 (92)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444433333333
No 189
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=24.49 E-value=4.7e+02 Score=22.71 Aligned_cols=70 Identities=20% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHHhhcCc-------
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ------GALLKYLNSISSNR------- 180 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~------~eL~kA~~~~~s~R------- 180 (202)
++|++.|+.+|..+..=-+..++|..-+++=+..+-+--....+-...++.|. ++|.||..+.++.-
T Consensus 70 ~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLtta~fqA~qKLksi~~A~krpvsSEelIKyAHrIS~~NaVsAPLT 149 (272)
T KOG4552|consen 70 QKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILTTACFQANQKLKSIKEAEKRPVSSEELIKYAHRISKHNAVSAPLT 149 (272)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhhcccccCccc
Q ss_pred hhH
Q 028891 181 WLM 183 (202)
Q Consensus 181 ~l~ 183 (202)
||+
T Consensus 150 W~~ 152 (272)
T KOG4552|consen 150 WQM 152 (272)
T ss_pred ccc
No 190
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.09 E-value=5.3e+02 Score=23.16 Aligned_cols=60 Identities=7% Similarity=0.076 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 028891 121 QNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 180 (202)
Q Consensus 121 ~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R 180 (202)
..+...+.++..=....-..+.+..+-+..++..++........-..+|..|.+....+|
T Consensus 207 ~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r 266 (312)
T smart00787 207 DRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCR 266 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 334434444444444444556666777788888888888888888888888877655444
No 191
>CHL00031 psbT photosystem II protein T
Probab=24.00 E-value=95 Score=18.87 Aligned_cols=16 Identities=19% Similarity=0.474 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHh
Q 028891 186 IFFVLIFFLMIFLFFV 201 (202)
Q Consensus 186 if~iliv~~iifvlf~ 201 (202)
++++..+.+++|.+|+
T Consensus 8 fll~~tlgilFFAI~F 23 (33)
T CHL00031 8 FLLVSTLGIIFFAIFF 23 (33)
T ss_pred HHHHHHHHHHHHhhee
Confidence 3344444455555543
No 192
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.87 E-value=2.6e+02 Score=19.50 Aligned_cols=24 Identities=4% Similarity=0.128 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVS 142 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~ 142 (202)
+.-++++...--.++|..|..-..
T Consensus 5 ~~l~L~R~~~~~~~~Y~~Ll~r~~ 28 (82)
T PF13807_consen 5 EYLRLQRDVEIKRELYETLLQRYE 28 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334777777777777777655443
No 193
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=23.74 E-value=1.5e+02 Score=24.86 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028891 113 MQSRAEALQNVESTIHELG 131 (202)
Q Consensus 113 iqeR~~~i~~Ie~~I~eL~ 131 (202)
++.|-.++++.-+.-.-|+
T Consensus 51 L~aRV~alE~~l~dq~ll~ 69 (204)
T PF00517_consen 51 LQARVLALERYLKDQQLLN 69 (204)
T ss_dssp HHHHHHHHHHHHHHHHH-S
T ss_pred hhhhHHHHHHHhhhHHHHH
Confidence 4444444444444444443
No 194
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=23.67 E-value=38 Score=27.66 Aligned_cols=12 Identities=25% Similarity=0.177 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHh
Q 028891 165 AQGALLKYLNSI 176 (202)
Q Consensus 165 a~~eL~kA~~~~ 176 (202)
|-..|.|-.+..
T Consensus 115 GyDsLLKkKEae 126 (159)
T PF06789_consen 115 GYDSLLKKKEAE 126 (159)
T ss_pred chHHHHHHHHHH
Confidence 445555544443
No 195
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=23.54 E-value=5.7e+02 Score=23.36 Aligned_cols=51 Identities=10% Similarity=0.219 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATL----VSQQGEIAIRIDENMDDTMANVEGAQGAL 169 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~m----V~eQge~IdrId~Nve~a~~nv~~a~~eL 169 (202)
-...|.+....|.++-..|... =.+..+.++.++.++.++...+......|
T Consensus 37 C~ssI~~QkkrLk~L~~sLk~~~~~~~~e~~~~i~~L~~~Ik~r~~~l~DmEa~L 91 (330)
T PF07851_consen 37 CSSSISHQKKRLKELKKSLKRCKKSLSAEERELIEKLEEDIKERRCQLFDMEAFL 91 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHhhHHHHHhhC
Confidence 3455555666677777766666 34567888888888888887777776555
No 196
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=22.40 E-value=2.1e+02 Score=20.39 Aligned_cols=36 Identities=17% Similarity=0.362 Sum_probs=24.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 106 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLV 141 (202)
Q Consensus 106 ~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV 141 (202)
++.-+.-+.++.++|++++..+....++..++..+|
T Consensus 47 lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 47 LPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455566777777777777777777777766654
No 197
>COG0818 DgkA Diacylglycerol kinase [Cell envelope biogenesis, outer membrane]
Probab=22.17 E-value=3.5e+02 Score=21.21 Aligned_cols=50 Identities=12% Similarity=0.307 Sum_probs=28.9
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHH
Q 028891 148 AIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMIF 197 (202)
Q Consensus 148 IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if~iliv~~iif 197 (202)
++-+..-+|.+.+.+..=..+|.|..|-..+.-.++..++.+++-.++++
T Consensus 69 vEllNTAIEa~VD~~s~e~helak~AKD~as~AVli~~l~a~~v~~~il~ 118 (123)
T COG0818 69 VELLNTAIEAVVDLISPEYHELAKRAKDMGSAAVLIASLFAVIVWLIILL 118 (123)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666776666665555555555555544444444
No 198
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=22.10 E-value=1.7e+02 Score=17.31 Aligned_cols=14 Identities=14% Similarity=0.415 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHh
Q 028891 188 FVLIFFLMIFLFFV 201 (202)
Q Consensus 188 ~iliv~~iifvlf~ 201 (202)
++..+.+++|.+|+
T Consensus 10 l~~tlgilffAI~F 23 (29)
T PF01405_consen 10 LIGTLGILFFAIFF 23 (29)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhhhc
Confidence 33344444555543
No 199
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=21.96 E-value=4.3e+02 Score=21.36 Aligned_cols=81 Identities=11% Similarity=0.101 Sum_probs=0.0
Q ss_pred HhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 028891 103 QQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWL 182 (202)
Q Consensus 103 ~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l 182 (202)
...++.-...+.+=...+..|...+.++.+...+++..+.++...++.|...++......+...............-++.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~l~~~~~~l~~~ 257 (262)
T smart00283 178 VELVEETGEALEEIVDSVEEIADLVQEIAAATDEQAAGSEEVNAAIDEIAQVTQETAAMSEEISAAAEELSGLAEELKEL 257 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 028891 183 M 183 (202)
Q Consensus 183 ~ 183 (202)
+
T Consensus 258 ~ 258 (262)
T smart00283 258 V 258 (262)
T ss_pred H
No 200
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=21.32 E-value=84 Score=24.02 Aligned_cols=29 Identities=17% Similarity=0.525 Sum_probs=13.9
Q ss_pred HHHHHHhhcCchh-HHHHHHHHHHHHHHHH
Q 028891 170 LKYLNSISSNRWL-MIKIFFVLIFFLMIFL 198 (202)
Q Consensus 170 ~kA~~~~~s~R~l-~~~if~iliv~~iifv 198 (202)
.+.+++.+.-.-. |+++++|+-+.+++||
T Consensus 5 ~k~~~~~kgFTLvEMLiVLlIISiLlLl~i 34 (107)
T COG4537 5 KKFLKHKKGFTLVEMLIVLLIISILLLLFI 34 (107)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHHHHHHc
Confidence 3445555444422 4455555555555543
No 201
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=21.29 E-value=2.9e+02 Score=21.08 Aligned_cols=26 Identities=12% Similarity=0.413 Sum_probs=14.3
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 105 MVPLQDSYMQSRAEALQNVESTIHEL 130 (202)
Q Consensus 105 ~~~~~~~~iqeR~~~i~~Ie~~I~eL 130 (202)
+++.++.++.+..+.|+.+.+++..|
T Consensus 83 Lm~rQN~mm~~qqqsidslsksvgkl 108 (121)
T PF10669_consen 83 LMNRQNNMMKQQQQSIDSLSKSVGKL 108 (121)
T ss_pred HHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 34555555555555555555555543
No 202
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=21.28 E-value=3.8e+02 Score=20.47 Aligned_cols=24 Identities=13% Similarity=0.140 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHH
Q 028891 165 AQGALLKYLNSISSNRWLMIKIFF 188 (202)
Q Consensus 165 a~~eL~kA~~~~~s~R~l~~~if~ 188 (202)
+..-...+..|...|.|+-+-|-.
T Consensus 68 sk~a~~~tD~yV~e~PWq~VGvaA 91 (104)
T COG4575 68 SKAAADATDDYVRENPWQGVGVAA 91 (104)
T ss_pred HHHHHHHHHHHHHcCCchHHHHHH
Confidence 334444566788899999765544
No 203
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=21.27 E-value=5.7e+02 Score=22.90 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 115 SRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 115 eR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
.|.+.|.+|-..+..|..+.+++.. +|+.-|+.-...++.-+..+..|..+
T Consensus 15 r~eEti~qi~~aL~~L~~v~~diF~----------rI~~Rv~~~~~~l~~i~~Ri~~~qaK 65 (297)
T PF11945_consen 15 RREETILQIADALEYLDKVSNDIFS----------RISARVERNRERLQAIQQRIEVAQAK 65 (297)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999998888888655 44455555555555555555544444
No 204
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=20.97 E-value=32 Score=26.69 Aligned_cols=13 Identities=23% Similarity=0.460 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 028891 117 AEALQNVESTIHE 129 (202)
Q Consensus 117 ~~~i~~Ie~~I~e 129 (202)
.+.++.++..+..
T Consensus 111 ~~~~~~~~~~l~~ 123 (183)
T PF01105_consen 111 KEHLDPLEESLEK 123 (183)
T ss_dssp -------------
T ss_pred hhhhhhhHHHHHH
Confidence 3344444444333
No 205
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=20.81 E-value=1.9e+02 Score=21.13 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHhhc-CchhHHHHHHHHHHHHHHHHHH
Q 028891 164 GAQGALLKYLNSISS-NRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 164 ~a~~eL~kA~~~~~s-~R~l~~~if~iliv~~iifvlf 200 (202)
.+...|+.+.+.-+- .|..+++.+++++..+.++.++
T Consensus 10 ~~~~~Lr~~c~~Lsp~~R~~vvl~ml~~fa~l~ly~~~ 47 (85)
T PF13150_consen 10 RADDRLRRYCGRLSPKQRLRVVLVMLVLFAALCLYMTV 47 (85)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666543 3333333333344444444443
No 206
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=20.06 E-value=8.6e+02 Score=24.22 Aligned_cols=49 Identities=18% Similarity=0.231 Sum_probs=41.0
Q ss_pred HHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 102 QQQMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIR 150 (202)
Q Consensus 102 q~q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~Idr 150 (202)
|.-+.+.|.-+...=+++|.+|...+...+.-.+++-..|.+|++.+..
T Consensus 243 t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~Al~KiQ~VVN~q~~aL~~ 291 (610)
T PF01601_consen 243 TDVLQENQKIIANSFNKAIGNIQLGFTTTASALNKIQDVVNQQGQALNQ 291 (610)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334456677777788999999999999999999999999999988764
No 207
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=20.03 E-value=5.7e+02 Score=23.05 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELG 131 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~ 131 (202)
..-|.+..+.|.++++.|.+|.
T Consensus 80 ~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 80 EESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555444
Done!