Query 028891
Match_columns 202
No_of_seqs 243 out of 1138
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 06:15:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028891.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028891hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hd7_B Syntaxin-1A; membrane p 99.9 1.2E-24 4.2E-29 165.5 14.0 79 109-187 12-90 (109)
2 1jth_B Syntaxin 1A; coiled-coi 99.9 1.2E-22 4E-27 145.4 10.4 74 111-184 3-76 (77)
3 2nps_B Syntaxin 13, vesicle-as 99.9 1.8E-21 6.3E-26 137.2 10.3 70 114-183 2-71 (71)
4 1sfc_B Protein (syntaxin 1A), 99.8 2.1E-20 7.3E-25 135.6 10.8 72 109-180 12-83 (83)
5 3b5n_B Protein SSO1; snare com 99.8 5.3E-20 1.8E-24 129.1 11.0 67 111-177 3-69 (69)
6 1n7s_B Syntaxin 1A; neuronal s 99.8 5.5E-19 1.9E-23 123.5 9.5 64 110-173 4-67 (68)
7 1gl2_B Syntaxin 7; membrane pr 99.8 3.5E-19 1.2E-23 123.6 8.4 64 111-174 2-65 (65)
8 2xhe_B Syntaxin1; exocytosis, 99.7 1.2E-18 4E-23 150.8 -1.1 72 109-180 208-279 (279)
9 1dn1_B Syntaxin 1A, syntaxin b 99.6 7.7E-18 2.6E-22 145.4 -1.7 76 109-184 191-266 (267)
10 3c98_B Syntaxin-1A; protein co 99.1 7.1E-12 2.4E-16 105.1 -1.8 77 107-183 201-277 (279)
11 2nps_D Syntaxin-6; vesicle fus 98.6 1.9E-07 6.4E-12 67.0 8.1 71 110-180 11-81 (82)
12 1gl2_D Syntaxin 8, vesicle tra 98.3 3.6E-06 1.2E-10 57.5 7.5 61 112-172 3-63 (65)
13 1fio_A SSO1 protein; four heli 98.2 3.5E-07 1.2E-11 74.2 1.7 38 108-145 159-196 (196)
14 1sfc_D Protein (SNAP-25B), pro 98.1 2E-05 6.9E-10 56.9 9.7 64 110-173 21-84 (87)
15 1n7s_D SNAP-25A; neuronal snar 98.1 2E-05 6.7E-10 53.9 8.9 61 112-172 4-64 (66)
16 3hd7_B Syntaxin-1A; membrane p 97.9 0.00041 1.4E-08 51.9 13.4 87 104-194 14-100 (109)
17 1l4a_D S-SNAP25 fusion protein 97.8 6E-05 2E-09 54.5 7.7 62 112-173 24-85 (87)
18 3b5n_D Protein transport prote 97.7 0.00032 1.1E-08 48.0 9.2 58 114-171 6-63 (64)
19 3hd7_A Vesicle-associated memb 97.6 0.0018 6.1E-08 47.0 12.1 43 118-160 5-47 (91)
20 1nhl_A Synaptosomal-associated 96.8 0.011 3.6E-07 38.8 8.4 48 123-170 5-52 (54)
21 1n7s_C SNAP-25A; neuronal snar 96.7 0.042 1.5E-06 38.7 11.4 59 113-171 18-76 (79)
22 2kog_A Vesicle-associated memb 95.9 0.00038 1.3E-08 53.1 -3.0 39 119-157 34-72 (119)
23 3b5n_C Protein transport prote 95.4 0.36 1.2E-05 33.2 10.9 47 128-174 22-68 (70)
24 1gl2_C VTI1B, vesicle transpor 94.6 0.36 1.2E-05 32.5 8.9 53 118-170 9-61 (65)
25 1l4a_C S-SNAP25 fusion protein 94.3 0.18 6.2E-06 35.9 7.3 51 119-169 28-78 (83)
26 2nps_C Vesicle transport throu 94.2 0.74 2.5E-05 32.3 10.2 68 112-179 13-80 (81)
27 3hd7_A Vesicle-associated memb 88.6 5 0.00017 28.5 11.8 23 109-131 24-46 (91)
28 1jth_B Syntaxin 1A; coiled-coi 88.4 4.4 0.00015 27.6 9.6 70 109-182 8-77 (77)
29 1sfc_A VAMP 2, protein (synapt 81.1 12 0.0004 26.8 8.6 41 118-158 30-70 (96)
30 1jdm_A Sarcolipin; helix, memb 73.0 3.4 0.00012 23.6 2.8 23 178-200 4-26 (31)
31 2nps_B Syntaxin 13, vesicle-as 63.9 29 0.00099 23.0 8.7 61 111-171 6-66 (71)
32 3b5n_A Synaptobrevin homolog 1 61.8 29 0.001 22.4 8.4 40 118-157 2-41 (61)
33 2nps_A VAMP-4, vesicle-associa 60.7 27 0.00091 23.5 6.1 39 119-157 9-47 (74)
34 3efg_A Protein SLYX homolog; x 57.3 41 0.0014 23.1 6.6 47 119-165 15-61 (78)
35 4gwp_A Mediator of RNA polymer 54.7 38 0.0013 25.2 6.4 66 110-175 3-72 (115)
36 1n7s_B Syntaxin 1A; neuronal s 54.5 43 0.0015 22.0 9.4 53 113-165 14-66 (68)
37 3n27_A Fusion glycoprotein F0, 53.5 43 0.0015 23.4 6.1 61 114-176 16-76 (80)
38 1qu7_A Methyl-accepting chemot 53.4 81 0.0028 25.5 9.0 57 109-165 138-194 (227)
39 3zx6_A HAMP, methyl-accepting 53.2 1.1E+02 0.0036 26.1 10.6 57 109-165 218-274 (341)
40 1urq_A M-tomosyn isoform; tran 50.8 50 0.0017 21.7 7.4 39 119-157 5-43 (63)
41 1l4a_A Synaptobrevin; snare, s 50.3 46 0.0016 22.7 6.0 39 119-157 16-54 (80)
42 1gl2_B Syntaxin 7; membrane pr 47.2 56 0.0019 21.2 8.7 55 112-166 10-64 (65)
43 1n7s_A Vesicle-associated memb 46.6 56 0.0019 21.1 9.9 42 118-159 4-45 (63)
44 3p8c_F ABL interactor 2; actin 43.1 1.2E+02 0.004 23.8 10.5 52 112-163 48-99 (159)
45 3b5n_B Protein SSO1; snare com 42.1 71 0.0024 20.9 10.2 56 112-167 11-66 (69)
46 1sfc_B Protein (syntaxin 1A), 42.1 79 0.0027 21.5 10.4 63 106-168 16-78 (83)
47 3fym_A Putative uncharacterize 41.8 5.4 0.00019 29.5 0.0 8 191-198 117-124 (130)
48 1fjk_A Cardiac phospholamban; 40.8 29 0.00099 21.8 3.2 14 186-199 35-48 (52)
49 3oja_B Anopheles plasmodium-re 37.3 2.3E+02 0.0077 25.4 11.8 12 123-134 507-518 (597)
50 3nmd_A CGMP dependent protein 36.3 1E+02 0.0035 21.0 7.4 33 109-141 31-63 (72)
51 3na7_A HP0958; flagellar bioge 34.4 1.9E+02 0.0064 23.6 10.2 54 117-170 31-84 (256)
52 1zxa_A CGMP-dependent protein 32.4 94 0.0032 20.9 5.0 29 109-137 16-44 (67)
53 3r84_A Mediator of RNA polymer 32.2 1.3E+02 0.0045 21.1 9.9 64 112-175 2-69 (86)
54 1qle_D Cytochrome AA3, ccytoch 31.4 50 0.0017 20.2 3.2 14 185-198 25-38 (43)
55 1gl2_A Endobrevin; membrane pr 29.9 1.2E+02 0.0039 19.7 8.0 40 118-157 9-48 (65)
56 2ch7_A Methyl-accepting chemot 29.3 2.3E+02 0.0077 22.9 10.4 41 117-157 218-258 (309)
57 3arc_T Photosystem II reaction 28.6 68 0.0023 18.5 3.2 15 187-201 9-23 (32)
58 2beq_A E2 glycoprotein; viral 28.6 98 0.0034 18.5 4.5 31 121-151 2-32 (38)
59 1jcd_A Major outer membrane li 27.5 1.2E+02 0.0042 19.2 7.0 28 148-175 20-47 (52)
60 2qyw_A Vesicle transport throu 26.5 1.1E+02 0.0039 21.6 5.0 30 114-143 45-74 (102)
61 3t98_B Nucleoporin NUP58/NUP45 25.9 1.8E+02 0.006 20.6 9.3 72 105-176 13-88 (93)
62 3onj_A T-snare VTI1; helix, HA 25.6 1.3E+02 0.0045 21.1 5.2 31 114-144 30-60 (97)
63 3htk_A Structural maintenance 25.0 1.3E+02 0.0045 18.8 9.1 51 118-168 5-55 (60)
64 3oja_A Leucine-rich immune mol 25.0 3.4E+02 0.012 23.6 10.2 65 104-168 414-478 (487)
65 1deq_A Fibrinogen (alpha chain 23.1 3.8E+02 0.013 23.8 8.6 49 108-156 85-134 (390)
66 2qih_A Protein USPA1; trimeric 22.7 2.6E+02 0.009 21.4 10.5 18 116-133 52-69 (157)
67 1ic2_A Tropomyosin alpha chain 22.2 1.9E+02 0.0063 19.5 9.4 55 121-175 23-77 (81)
68 2akf_A Coronin-1A; coiled coil 22.0 1.2E+02 0.004 17.2 3.4 19 138-156 12-30 (32)
69 1lwu_C Fibrinogen gamma chain; 20.8 3.5E+02 0.012 23.3 7.9 33 120-152 21-53 (323)
70 1vcs_A Vesicle transport throu 20.7 1.2E+02 0.0041 21.5 4.1 30 114-143 34-63 (102)
71 4aj5_K Spindle and kinetochore 20.6 2.7E+02 0.0093 20.8 9.8 45 119-166 51-95 (123)
No 1
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.92 E-value=1.2e-24 Score=165.46 Aligned_cols=79 Identities=30% Similarity=0.378 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMIKIF 187 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~~if 187 (202)
...++++|++++++||++|.||++||.+|+.||.+||++||+||+|++.|..||++|+++|.||.+|++++|+++|+++
T Consensus 12 ~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l 90 (109)
T 3hd7_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII 90 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehH
Confidence 5779999999999999999999999999999999999999999999999999999999999999999987765444333
No 2
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.88 E-value=1.2e-22 Score=145.44 Aligned_cols=74 Identities=31% Similarity=0.406 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 028891 111 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI 184 (202)
Q Consensus 111 ~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~ 184 (202)
.++++|+++|.+||++|.||++||.+|+.||.+||++||+||+||+.|..||+.|..+|.||.+|++++||++|
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~ 76 (77)
T 1jth_B 3 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 58899999999999999999999999999999999999999999999999999999999999999999887765
No 3
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.86 E-value=1.8e-21 Score=137.24 Aligned_cols=70 Identities=27% Similarity=0.415 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~ 183 (202)
++|+++|.+||++|.||++||.+|+.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++|+|+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4899999999999999999999999999999999999999999999999999999999999999888763
No 4
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.83 E-value=2.1e-20 Score=135.56 Aligned_cols=72 Identities=31% Similarity=0.403 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 180 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R 180 (202)
...++++|+++|.+||++|.||++||.+|+.||.+||++||+||+||+.|..||++|..+|.||.+|++++|
T Consensus 12 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 12 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 567899999999999999999999999999999999999999999999999999999999999999999876
No 5
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.83 E-value=5.3e-20 Score=129.11 Aligned_cols=67 Identities=31% Similarity=0.416 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhh
Q 028891 111 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSIS 177 (202)
Q Consensus 111 ~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~ 177 (202)
.++++|+++|.+||++|.||++||.+|+.||.+||++||+||+||+.|..||++|..+|.||.+|++
T Consensus 3 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 3 AEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4789999999999999999999999999999999999999999999999999999999999999975
No 6
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.79 E-value=5.5e-19 Score=123.54 Aligned_cols=64 Identities=31% Similarity=0.435 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 173 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~ 173 (202)
..++++|+++|.+||++|.||++||.+|+.||.+||++||+||+||+.|..||++|..+|.||.
T Consensus 4 l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 4 LSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999999999999999999999999999999985
No 7
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.79 E-value=3.5e-19 Score=123.57 Aligned_cols=64 Identities=25% Similarity=0.486 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 028891 111 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 174 (202)
Q Consensus 111 ~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~ 174 (202)
.++++|+++|.+|+++|.||++||.+|+.||.+||++||+||+||+.|..||++|..+|.||.+
T Consensus 2 ~~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 2 SHMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4789999999999999999999999999999999999999999999999999999999999864
No 8
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.69 E-value=1.2e-18 Score=150.77 Aligned_cols=72 Identities=25% Similarity=0.393 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 180 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R 180 (202)
...++++|+++|.+||++|.||++||.+|+.||.+||++||+||+||+.|..||++|+.+|.||.+|++++|
T Consensus 208 ~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 208 KLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp --CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 456899999999999999999999999999999999999999999999999999999999999999999876
No 9
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.64 E-value=7.7e-18 Score=145.36 Aligned_cols=76 Identities=30% Similarity=0.377 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLMI 184 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~~ 184 (202)
...++++|+++|.+||++|.||++||.+|+.||.+||++||+||+||+.|..||+.|..+|.+|.+|++++|++.|
T Consensus 191 ~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 191 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 4678999999999999999999999999999999999999999999999999999999999999999998876654
No 10
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.07 E-value=7.1e-12 Score=105.14 Aligned_cols=77 Identities=29% Similarity=0.346 Sum_probs=57.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 028891 107 PLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 107 ~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~ 183 (202)
.....++++|.+++.+|+..|.+|+++|.+|+.+|.+|++++++|+.||+.+..+|+.|..+|.+|.+|+++.|+|.
T Consensus 201 ~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk 277 (279)
T 3c98_B 201 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 277 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC-----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999998877554
No 11
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=98.59 E-value=1.9e-07 Score=66.98 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 028891 110 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNR 180 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R 180 (202)
..++++.++.++.|..+|..|.+|..+|+..|.+|.++||++++.++.+...+..+++.+.+..+..+++|
T Consensus 11 ~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 11 NNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 44667778899999999999999999999999999999999999999999999999999999988766554
No 12
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.26 E-value=3.6e-06 Score=57.51 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 172 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA 172 (202)
++++.++.++.|...+..|++|..+|+..|.+|.++||+|++.++.+...+..+++.+.+.
T Consensus 3 ~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l 63 (65)
T 1gl2_D 3 HMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63 (65)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677888999999999999999999999999999999999999999999999999888664
No 13
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=98.20 E-value=3.5e-07 Score=74.23 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 108 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQG 145 (202)
Q Consensus 108 ~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQg 145 (202)
....++++|+++|.+||++|.||++||.+||.||++||
T Consensus 159 ~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 159 TALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999997
No 14
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=98.13 E-value=2e-05 Score=56.92 Aligned_cols=64 Identities=22% Similarity=0.247 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 173 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~ 173 (202)
+.+.++.++.++.|...+..|+.|..+|+..|.+|.++||+|+..++.+...+..+++.+.+..
T Consensus 21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll 84 (87)
T 1sfc_D 21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 84 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 4566778889999999999999999999999999999999999999999999999999887643
No 15
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=98.12 E-value=2e-05 Score=53.93 Aligned_cols=61 Identities=20% Similarity=0.205 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKY 172 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA 172 (202)
+-++.++.+..|...+..|++|..+|+..|..|.++||+|+..++.+...+..+++.+.+.
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~l 64 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3356678899999999999999999999999999999999999999999999999888763
No 16
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.90 E-value=0.00041 Score=51.94 Aligned_cols=87 Identities=7% Similarity=0.172 Sum_probs=72.5
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchhH
Q 028891 104 QMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWLM 183 (202)
Q Consensus 104 q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l~ 183 (202)
..+.+....+++=++.+.+|..-..+|+.+..+=+.+|..=+..++....|++.+...+.+|. +|.++.++++|++
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~----~yqk~~rkk~~i~ 89 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV----KYQSKARRKKIMI 89 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhccCcceeh
Confidence 344456777888889999999999999999999999999999999999999999999999997 4566666677888
Q ss_pred HHHHHHHHHHH
Q 028891 184 IKIFFVLIFFL 194 (202)
Q Consensus 184 ~~if~iliv~~ 194 (202)
+++++++++++
T Consensus 90 l~~~~i~~~i~ 100 (109)
T 3hd7_B 90 IICCVILGIII 100 (109)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77766654443
No 17
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.85 E-value=6e-05 Score=54.53 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYL 173 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~ 173 (202)
.-.+.++.++.|...+..|+.|..+|+..|..|.++||+|++.++.+...+..+++.+.+..
T Consensus 24 ~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll 85 (87)
T 1l4a_D 24 REDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLL 85 (87)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566888999999999999999999999999999999999999999999999999887643
No 18
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00032 Score=47.96 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 171 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~k 171 (202)
.+-++.+.+|...+..|..|...|+..|..|.++||+|+..++.+...+..+++.|.+
T Consensus 6 ~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 6 LEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4567789999999999999999999999999999999999999999999999988764
No 19
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.58 E-value=0.0018 Score=47.00 Aligned_cols=43 Identities=19% Similarity=0.258 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMA 160 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~ 160 (202)
+.+.+++..+.|+..+..+=-..|-+-||-||.+++..++-..
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 5688899999999999999888999999999998877665444
No 20
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.78 E-value=0.011 Score=38.82 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028891 123 VESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 170 (202)
Q Consensus 123 Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~ 170 (202)
..+-+.|-.++-.....++.+|||.|++|+.+++++..++..|.+.|.
T Consensus 5 ~~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 5 ILGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 344556666677778889999999999999999999999999988774
No 21
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=96.67 E-value=0.042 Score=38.69 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028891 113 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 171 (202)
Q Consensus 113 iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~k 171 (202)
.++=.+.+++..+.+.|-.++-.....+++.|||.|++|+.+++++..++..|.+.|..
T Consensus 18 ~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 18 ADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 33334557777788888888999999999999999999999999999999999987753
No 22
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=95.91 E-value=0.00038 Score=53.11 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 157 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~ 157 (202)
.+.+++..+.|+..+..+=-..|-+-||-||.+++..++
T Consensus 34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADA 72 (119)
T ss_dssp HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 355666667777777777777778888888887766554
No 23
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.38 E-value=0.36 Score=33.18 Aligned_cols=47 Identities=11% Similarity=0.058 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 028891 128 HELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLN 174 (202)
Q Consensus 128 ~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~ 174 (202)
.+-.+.-..=..++.+|||.|++||.|++.+..+...|.+.|..-..
T Consensus 22 ~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 22 QDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33334444455688899999999999999999999999988865443
No 24
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=94.55 E-value=0.36 Score=32.50 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 170 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~ 170 (202)
+.++.-.+.+.|--++-..+...+..|+|.|.+....+.++..++..+.+-|.
T Consensus 9 ~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 9 QSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 34566667777888888889999999999999999999999999999987764
No 25
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=94.35 E-value=0.18 Score=35.88 Aligned_cols=51 Identities=20% Similarity=0.243 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGAL 169 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL 169 (202)
..++.-+-+.+..+.-..=..++..|||.|+||+.+++....++..|.+.|
T Consensus 28 STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 28 STRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666666677788999999999999999999999888776654
No 26
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=94.18 E-value=0.74 Score=32.27 Aligned_cols=68 Identities=21% Similarity=0.171 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcC
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSN 179 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~ 179 (202)
.+..=.+.++.-.+.+.|=-+|-..+..-+..|.|.|.+....+.++..++..+.+-|..-.++.-.|
T Consensus 13 ~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~~n 80 (81)
T 2nps_C 13 RLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRIIQN 80 (81)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhC
Confidence 34444556888888889999999999999999999999999999999999999999888776664433
No 27
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=88.61 E-value=5 Score=28.47 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELG 131 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~ 131 (202)
+-+-+-+|.+.++.+.....+|.
T Consensus 24 NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 24 NVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHH
Confidence 33344455555555544444433
No 28
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=88.44 E-value=4.4 Score=27.63 Aligned_cols=70 Identities=4% Similarity=0.148 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhcCchh
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSISSNRWL 182 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~~s~R~l 182 (202)
-...+++=...|.+|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.+ +.+..++++|+
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~----~q~~~rkk~~i 77 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK----YQSKARRKKIM 77 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----C----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhcCcccC
Confidence 34556677778888888899999999999999998899999999999999999999875 44555555553
No 29
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=81.07 E-value=12 Score=26.84 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDT 158 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a 158 (202)
+.|.+|...+.|+..|..+=-..|-+-||-|+.+++-.++-
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L 70 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45677888888888888888888899999999888766553
No 30
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=72.98 E-value=3.4 Score=23.64 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=16.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHH
Q 028891 178 SNRWLMIKIFFVLIFFLMIFLFF 200 (202)
Q Consensus 178 s~R~l~~~if~iliv~~iifvlf 200 (202)
+.|-+++-+.+|+|.++++|+++
T Consensus 4 n~qELf~NFt~vLI~vlLi~llV 26 (31)
T 1jdm_A 4 NTRELFLNFTIVLITVILMWLLV 26 (31)
T ss_dssp CSSSSHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777888888888874
No 31
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=63.94 E-value=29 Score=23.03 Aligned_cols=61 Identities=10% Similarity=0.122 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 028891 111 SYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLK 171 (202)
Q Consensus 111 ~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~k 171 (202)
..++.=...|.+|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.+.-++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 66 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKK 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666778888888999999999999999999999999999999999999999864433
No 32
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=61.85 E-value=29 Score=22.40 Aligned_cols=40 Identities=18% Similarity=0.316 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 157 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~ 157 (202)
+.+.+|...+.|+..|..+=-.-|-+-||-|+.+.+..++
T Consensus 2 d~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 2 SRTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3577889999999999998888899999999988776654
No 33
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=60.66 E-value=27 Score=23.53 Aligned_cols=39 Identities=15% Similarity=0.330 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 157 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~ 157 (202)
.+.+|...+.|+..|..+=-.-|-+-||-|+.+++-.++
T Consensus 9 ~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~ 47 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSES 47 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355666777777777777777778888888887765554
No 34
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=57.26 E-value=41 Score=23.12 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a 165 (202)
.|..||..+.-.-....+|+..|.+|...||++...+..-...+...
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777777788888888888888887776666655443
No 35
>4gwp_A Mediator of RNA polymerase II transcription subun; binding sites, mediator complex, models, molecular, phosphor protein structure; 4.20A {Saccharomyces cerevisiae} PDB: 4gwq_A
Probab=54.69 E-value=38 Score=25.21 Aligned_cols=66 Identities=12% Similarity=0.251 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 110 DSYMQSRAEALQNVESTIHELG----NIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 110 ~~~iqeR~~~i~~Ie~~I~eL~----~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
..|++||-+.+.+|-..|.-+- ++|.-++.+=.....+=..++.++..--..++.+...|+|-.+.
T Consensus 3 p~~VqERLdSL~~ID~kl~slL~~~S~~~~t~~elK~g~~~~K~qF~~~~~~fY~~Ls~~a~~LRkEIK~ 72 (115)
T 4gwp_A 3 PPYIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQL 72 (115)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999998887776554 44444444322233344557777777777788888777776655
No 36
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=54.50 E-value=43 Score=21.97 Aligned_cols=53 Identities=2% Similarity=0.137 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028891 113 MQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 113 iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a 165 (202)
+++=.+.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|
T Consensus 14 i~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 66 (68)
T 1n7s_B 14 IIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555555555555555555555555555444
No 37
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=53.46 E-value=43 Score=23.38 Aligned_cols=61 Identities=15% Similarity=0.244 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
++-+++|.+|......+.-..+-+-..|..+|.. .|.-+...|...++....+|.|+.+..
T Consensus 16 q~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~~~ 76 (80)
T 3n27_A 16 ESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQKL 76 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHHHh
Confidence 3444444444444444444444444444444432 466677888888888888888887654
No 38
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=53.41 E-value=81 Score=25.49 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a 165 (202)
....+.+=.+.+..|...+.++...+.+++..+.+|...++.|...+++...-++..
T Consensus 138 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 194 (227)
T 1qu7_A 138 GSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 194 (227)
T ss_dssp HHHHHHHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555678889999999999999999999999999999988887765554443
No 39
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=53.25 E-value=1.1e+02 Score=26.11 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGA 165 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a 165 (202)
....+.+=.+.+..|...+.++.+.+.+++.-+.+|...++.|..+++....-++..
T Consensus 218 ~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~ 274 (341)
T 3zx6_A 218 GSTLVESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQN 274 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556678888999999999999999999999998888887777665544443
No 40
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=50.83 E-value=50 Score=21.72 Aligned_cols=39 Identities=8% Similarity=0.181 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 157 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~ 157 (202)
.+..+...+.++.+++.+=-..|.|-||-|+.|++-.++
T Consensus 5 ~i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 5 GIEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888888888888888888999988888877665
No 41
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=50.31 E-value=46 Score=22.68 Aligned_cols=39 Identities=18% Similarity=0.271 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 157 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~ 157 (202)
.|.+|...+.|+..|..+=-..|-+-||-|+.+++-.++
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 355666667777777777777788888888888766554
No 42
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=47.20 E-value=56 Score=21.23 Aligned_cols=55 Identities=5% Similarity=0.180 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 166 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~ 166 (202)
.++.=.+.|..|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 10 ~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 10 SIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3344455566666666666666666666666666666666666666666666553
No 43
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=46.57 E-value=56 Score=21.05 Aligned_cols=42 Identities=17% Similarity=0.245 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTM 159 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~ 159 (202)
+.+.++...+.|+..+..+=-..|-+-||-|+.+++-.+.-.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~ 45 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 568889999999999999999999999999998887665533
No 44
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=43.07 E-value=1.2e+02 Score=23.76 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVE 163 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~ 163 (202)
+-+-+.-..+.|.+.+..|+.+...|-.|+..|.+.|.++|..|.....-|.
T Consensus 48 leeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ 99 (159)
T 3p8c_F 48 LEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVD 99 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455688999999999999999999999999999999999987665543
No 45
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=42.14 E-value=71 Score=20.94 Aligned_cols=56 Identities=4% Similarity=0.073 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQG 167 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~ 167 (202)
.+++=.+.|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+
T Consensus 11 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 11 ELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555566666666666666666666666666666666666666666666543
No 46
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=42.13 E-value=79 Score=21.50 Aligned_cols=63 Identities=3% Similarity=0.104 Sum_probs=49.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028891 106 VPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 168 (202)
Q Consensus 106 ~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~e 168 (202)
+..-...+++=.+.|.+|..-..+|+.|..+=+.+|..=...++....||+.+...+.+|.+.
T Consensus 16 i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 78 (83)
T 1sfc_B 16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777788888888888888888888888888888888888888888888888653
No 47
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=41.78 E-value=5.4 Score=29.53 Aligned_cols=8 Identities=13% Similarity=0.733 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 028891 191 IFFLMIFL 198 (202)
Q Consensus 191 iv~~iifv 198 (202)
++.+++|+
T Consensus 117 ~i~~~~~~ 124 (130)
T 3fym_A 117 LITLLLWI 124 (130)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 33333443
No 48
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=40.77 E-value=29 Score=21.81 Aligned_cols=14 Identities=36% Similarity=0.859 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHHH
Q 028891 186 IFFVLIFFLMIFLF 199 (202)
Q Consensus 186 if~iliv~~iifvl 199 (202)
+++++|+.++|+++
T Consensus 35 fclilicllli~ii 48 (52)
T 1fjk_A 35 FCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444444443
No 49
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=37.33 E-value=2.3e+02 Score=25.36 Aligned_cols=12 Identities=8% Similarity=0.077 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 028891 123 VESTIHELGNIF 134 (202)
Q Consensus 123 Ie~~I~eL~~if 134 (202)
+++.+..+.+-.
T Consensus 507 l~~~~~~~~~~~ 518 (597)
T 3oja_B 507 LNKVFTHLKERQ 518 (597)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhhh
Confidence 333333333333
No 50
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.28 E-value=1e+02 Score=21.02 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQLATLV 141 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV 141 (202)
-++.|++|+..|+.+++.+.+.......|-..+
T Consensus 31 K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 31 KIEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655555554433
No 51
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.45 E-value=1.9e+02 Score=23.55 Aligned_cols=54 Identities=11% Similarity=0.057 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 028891 117 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALL 170 (202)
Q Consensus 117 ~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~ 170 (202)
..++..++..+..+..-+..+...+.+-..-+.+++..++.+...+......|.
T Consensus 31 p~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~ 84 (256)
T 3na7_A 31 RKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKMS 84 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888888888888888888888888888888777774
No 52
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=32.38 E-value=94 Score=20.85 Aligned_cols=29 Identities=14% Similarity=0.247 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 109 QDSYMQSRAEALQNVESTIHELGNIFNQL 137 (202)
Q Consensus 109 ~~~~iqeR~~~i~~Ie~~I~eL~~if~~L 137 (202)
-...++.|...|..+|.++.+=...-.+|
T Consensus 16 ~~~~i~~Kde~I~eLE~~L~~kd~eI~eL 44 (67)
T 1zxa_A 16 FAKILMLKEERIKELEKRLSEKEEEIQEL 44 (67)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666554433333333
No 53
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=32.24 E-value=1.3e+02 Score=21.10 Aligned_cols=64 Identities=13% Similarity=0.271 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 112 YMQSRAEALQNVESTIHELGNIFNQLATLVSQQ----GEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 112 ~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQ----ge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
|++||-+.+..|...|..|-+=+...-.-..+- ...=...+.++.+--..++.....|+|=.++
T Consensus 2 ~iqERL~sL~~ID~~i~sLL~~as~~i~tls~~k~~~~~~K~~F~~~t~~fy~tL~~v~v~LrkEIk~ 69 (86)
T 3r84_A 2 YIQERLKSLNDIETQLCSMLQEASQVTFIFGELKRGNESVKPQFENHVKQFYERLDKSTTQLRKEIQL 69 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988876544333332222221 1233446666666666677777777665444
No 54
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=31.40 E-value=50 Score=20.24 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 028891 185 KIFFVLIFFLMIFL 198 (202)
Q Consensus 185 ~if~iliv~~iifv 198 (202)
++..++++++++|.
T Consensus 25 k~gt~~~~~~ll~m 38 (43)
T 1qle_D 25 TWVSILSIAVLVFL 38 (43)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444444
No 55
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=29.87 E-value=1.2e+02 Score=19.73 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 157 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~ 157 (202)
+.+.+|...+.|+..|+.+=-.-|-+-||-|+.+.+-.++
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~ 48 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED 48 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4577788888888888888778888888888887765554
No 56
>2ch7_A Methyl-accepting chemotaxis protein; receptor, four-helix bundle, signal transduction, methyl-accepting receptor; 2.5A {Thermotoga maritima} SCOP: h.4.5.1 PDB: 2ch7_B
Probab=29.27 E-value=2.3e+02 Score=22.92 Aligned_cols=41 Identities=15% Similarity=0.345 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 028891 117 AEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDD 157 (202)
Q Consensus 117 ~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~ 157 (202)
.+.+..+...+.++.+.+.++...+.++...++.|...+++
T Consensus 218 ~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 258 (309)
T 2ch7_A 218 DEKLNSIVGAVERINEMLQNIAAAIEEQTAAVDEITTAMTE 258 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666666666666666666555443
No 57
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=28.64 E-value=68 Score=18.54 Aligned_cols=15 Identities=33% Similarity=0.662 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHh
Q 028891 187 FFVLIFFLMIFLFFV 201 (202)
Q Consensus 187 f~iliv~~iifvlf~ 201 (202)
+++..+.+++|.+|+
T Consensus 9 ll~~tlgiiFFAI~F 23 (32)
T 3arc_T 9 IFACIIALFFFAIFF 23 (32)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhh
Confidence 333444444555553
No 58
>2beq_A E2 glycoprotein; viral protein, coiled coil, membrane fusion, viral entry, envelope protein, signal, transmembrane, virulence; 1.6A {Sars coronavirus PUMC03} SCOP: h.3.3.1
Probab=28.62 E-value=98 Score=18.54 Aligned_cols=31 Identities=10% Similarity=0.279 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 121 QNVESTIHELGNIFNQLATLVSQQGEIAIRI 151 (202)
Q Consensus 121 ~~Ie~~I~eL~~if~~La~mV~eQge~IdrI 151 (202)
.++...+...+.-+..+-..|.+||+.+..+
T Consensus 2 ~q~~~g~~tv~~AL~KiQ~VVN~q~~aL~~L 32 (38)
T 2beq_A 2 SQIQESLTTTSTALGKLQDVVNQNAQALNTL 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567777788888888888888888887654
No 59
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.55 E-value=1.2e+02 Score=19.24 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=15.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 148 AIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 148 IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
|+.+..+|......|..|..|-.+|..+
T Consensus 20 VdqLssdV~al~~~v~~ak~eA~RAN~R 47 (52)
T 1jcd_A 20 ADQASNDANAARSDAQAAKDDAARANQR 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344445555555666666666665554
No 60
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=26.49 E-value=1.1e+02 Score=21.64 Aligned_cols=30 Identities=3% Similarity=0.206 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQ 143 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~e 143 (202)
.+|...|.+|++.+.|..++-.+|-..|..
T Consensus 45 e~rk~~i~~ie~~ldEA~eLl~qMelE~r~ 74 (102)
T 2qyw_A 45 EEKKKLVRDFDEKQQEANETLAEMEEELRY 74 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 577778888888888888888887777754
No 61
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=25.94 E-value=1.8e+02 Score=20.56 Aligned_cols=72 Identities=13% Similarity=0.188 Sum_probs=48.6
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHH--H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Q 028891 105 MVPLQDSYMQSRAEALQNVESTIHELGN--I--FNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNSI 176 (202)
Q Consensus 105 ~~~~~~~~iqeR~~~i~~Ie~~I~eL~~--i--f~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~~ 176 (202)
+++.-+..++.-...|+++|+.+.-+.. - =++|..-++.|-+..-.+-..+.....+|+.-..+-.+.+|+.
T Consensus 13 lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~Yl~~rr~~ 88 (93)
T 3t98_B 13 LVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQYLSYRKMF 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455666666777777777665543 1 1467777777777777777777888888887777777666664
No 62
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.59 E-value=1.3e+02 Score=21.06 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQQ 144 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~eQ 144 (202)
.+|...+..|++.+.|..++-.+|-..|..=
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999998888643
No 63
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.00 E-value=1.3e+02 Score=18.76 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028891 118 EALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 168 (202)
Q Consensus 118 ~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~e 168 (202)
+++.++++.+.++.+.+...-..+.+...-++....++..+.+++..-..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 5 NTKKTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666666554433
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.99 E-value=3.4e+02 Score=23.61 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=0.0
Q ss_pred hhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 028891 104 QMVPLQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGA 168 (202)
Q Consensus 104 q~~~~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~e 168 (202)
...+..+++.+++..+.++..+......+-.+++...-..+...++.+|..+.+|...+..|...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVR 478 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHH
No 65
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.06 E-value=3.8e+02 Score=23.83 Aligned_cols=49 Identities=16% Similarity=0.172 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHH
Q 028891 108 LQDSYMQSRAEALQNVESTIHELGNIFNQLATLVSQQGEIAIR-IDENMD 156 (202)
Q Consensus 108 ~~~~~iqeR~~~i~~Ie~~I~eL~~if~~La~mV~eQge~Idr-Id~Nve 156 (202)
....|+..=.+.+++..+.+.+....|.+++..+..|-+.|++ |+.++.
T Consensus 85 ~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 85 DSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 4567777777788888888888888888888888887777654 555544
No 66
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell adhesion; 1.90A {Moraxella catarrhalis}
Probab=22.65 E-value=2.6e+02 Score=21.44 Aligned_cols=18 Identities=22% Similarity=0.342 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028891 116 RAEALQNVESTIHELGNI 133 (202)
Q Consensus 116 R~~~i~~Ie~~I~eL~~i 133 (202)
-...|+.+++.|.+|...
T Consensus 52 NqadI~~L~~dI~dLd~~ 69 (157)
T 2qih_A 52 NQADIQLHDKKITNLGIL 69 (157)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 344566666666655443
No 67
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=22.16 E-value=1.9e+02 Score=19.48 Aligned_cols=55 Identities=13% Similarity=0.057 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 028891 121 QNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQGALLKYLNS 175 (202)
Q Consensus 121 ~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~~eL~kA~~~ 175 (202)
...+..+.+...-....-..|..-.--|..++..++.+...+..++..|..+.+.
T Consensus 23 ~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~ 77 (81)
T 1ic2_A 23 EQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKK 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555666666667778889999999999999999999877554
No 68
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=22.04 E-value=1.2e+02 Score=17.19 Aligned_cols=19 Identities=21% Similarity=0.328 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhHH
Q 028891 138 ATLVSQQGEIAIRIDENMD 156 (202)
Q Consensus 138 a~mV~eQge~IdrId~Nve 156 (202)
...|.+=.+-+||+|+.|.
T Consensus 12 ~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 12 NAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444556677776553
No 69
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=20.81 E-value=3.5e+02 Score=23.26 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 120 LQNVESTIHELGNIFNQLATLVSQQGEIAIRID 152 (202)
Q Consensus 120 i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId 152 (202)
|...+..|..|..+...+...|.+..+.|..++
T Consensus 21 i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~ 53 (323)
T 1lwu_C 21 GVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIR 53 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444333333333
No 70
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=20.69 E-value=1.2e+02 Score=21.48 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028891 114 QSRAEALQNVESTIHELGNIFNQLATLVSQ 143 (202)
Q Consensus 114 qeR~~~i~~Ie~~I~eL~~if~~La~mV~e 143 (202)
.+|...|.+|++.+.|..++-.+|-..|..
T Consensus 34 eerk~~i~~ie~~l~EA~ell~qMelE~r~ 63 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLEQMDLEVRE 63 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999988865
No 71
>4aj5_K Spindle and kinetochore-associated protein 2; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.57 E-value=2.7e+02 Score=20.79 Aligned_cols=45 Identities=24% Similarity=0.267 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 028891 119 ALQNVESTIHELGNIFNQLATLVSQQGEIAIRIDENMDDTMANVEGAQ 166 (202)
Q Consensus 119 ~i~~Ie~~I~eL~~if~~La~mV~eQge~IdrId~Nve~a~~nv~~a~ 166 (202)
++..|.+...-|...|. .+-.+|.|.+|+|-..+..+..-|..-+
T Consensus 51 ~LsaIk~ry~~L~~q~~---~iaaeQke~~d~ir~tL~~tm~miQ~LQ 95 (123)
T 4aj5_K 51 ELSVIKSRYQTLYARFK---PVAVEQKESKSRICATVKKTMNMIQKLQ 95 (123)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666 4667899999999988877766555433
Done!