BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028893
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8ZJ07|UVRA_YERPE UvrABC system protein A OS=Yersinia pestis GN=uvrA PE=3 SV=1
Length = 947
Score = 35.8 bits (81), Expect = 0.20, Method: Composition-based stats.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIV 73
ACQ G +I + +HF D++ H C + Y + + +YK I ++ LA+
Sbjct: 742 ACQ----GDGVIKVEMHFLPDIYVPCDH--CKGKRYNRET-LEVKYKGKSIHEV--LAMT 792
Query: 74 IESEEAYH--IPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGE 131
IE + +PA+ + LQ L+D+G+ ++CL + L E+ KL+ G+
Sbjct: 793 IEEAREFFDAVPALARKLQTLIDVGLSYICLGQSATTL-SGGEAQRVKLSRELSKRGTGQ 851
Query: 132 SNLLLDHKHITLEFA 146
+ +LD L FA
Sbjct: 852 TLYILDEPTTGLHFA 866
>sp|Q6DHR8|NGBR_DANRE Nogo-B receptor OS=Danio rerio GN=nus1 PE=2 SV=1
Length = 274
Score = 35.0 bits (79), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 64 IDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNA 123
++KL ++ +EE H + L+ W + +G+ +V +YD +G+ K+ NN+
Sbjct: 74 LEKLPLHVGLLVTEEEIHYTDIANLVVWCMAVGISYVSVYDNQGVFKR---------NNS 124
Query: 124 TLFEE 128
L EE
Sbjct: 125 RLMEE 129
>sp|Q96E22|NGBR_HUMAN Nogo-B receptor OS=Homo sapiens GN=NUS1 PE=1 SV=1
Length = 293
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 47/102 (46%), Gaps = 13/102 (12%)
Query: 72 IVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGK----------LN 121
++ E E+ + L+ W + +G+ ++ +YD +GI K++ ++ + L+
Sbjct: 104 VITEVEQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRNNSRLMDEILKQQQELLGLD 163
Query: 122 NATLFEEAGESNLLLD---HKHITLEFASFPDGKEAVAKAAN 160
+ E SN D + H+ ++ S DGK + +AA
Sbjct: 164 CSKYSPEFANSNDKDDQVLNCHLAVKVLSPEDGKADIVRAAQ 205
>sp|B2V6B4|SYC_SULSY Cysteine--tRNA ligase OS=Sulfurihydrogenibium sp. (strain YO3AOP1)
GN=cysS PE=3 SV=1
Length = 487
Score = 33.5 bits (75), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 50 LISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109
+IS +K Y D +K R IE HIP +I +Q LVD G + D +
Sbjct: 88 VISDKFIKEY-FDDAEKFRIEPADIEPRVTTHIPDIINFIQKLVDAGYAYEADGDVYFSV 146
Query: 110 KKSKESILGKLNNATLFE 127
+K KE GKL+ ++ E
Sbjct: 147 RKFKE--YGKLSKRSIDE 162
>sp|B8F571|CMOB_HAEPS tRNA (mo5U34)-methyltransferase OS=Haemophilus parasuis serovar 5
(strain SH0165) GN=cmoB PE=3 SV=2
Length = 320
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 77 EEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLL 136
+ Y IP+V L+ WL +G K+V D E + ++ L N TL + L
Sbjct: 245 KNVYFIPSVPALINWLEKVGFKNVRCVD-EAVTTSEEQRKTDWLENETLVD-------FL 296
Query: 137 DHKHITLEFASFPDGKEAVAKAAN 160
D + + +P K AV A N
Sbjct: 297 DPQDHSKTIEGYPAPKRAVIIATN 320
>sp|O67163|SYC_AQUAE Cysteine--tRNA ligase OS=Aquifex aeolicus (strain VF5) GN=cysS PE=3
SV=1
Length = 495
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 55 ILKRYKA---LDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKK 111
I RY A +D++ +R +E HIP +I+++Q LV+ G +V D +KK
Sbjct: 89 IADRYIARYYVDMENIRVRPADVEPRVTEHIPEIIEVIQKLVEKGYAYVVEGDVYFSVKK 148
Query: 112 SKESILGKLNNATLFEE-AGESNLLLDHKHITLEFA 146
K+ GKL+ + E AG + K L+FA
Sbjct: 149 FKD--YGKLSKRDIEELIAGARVEPSEKKRDPLDFA 182
>sp|Q8ZRJ7|FADE_SALTY Acyl-coenzyme A dehydrogenase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=fadE PE=2 SV=1
Length = 814
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 12 SWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKAL 62
+W +G GLW IWLL+ A+ L F L + +IS+ + + ++ +
Sbjct: 32 AWTAALGVAGLWSIWLLVPLAIILVPFNL---TPMRKSMISAPVFRGFRKV 79
>sp|Q8Z937|FADE_SALTI Acyl-coenzyme A dehydrogenase OS=Salmonella typhi GN=fadE PE=3
SV=1
Length = 814
Score = 32.0 bits (71), Expect = 3.0, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 12 SWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKAL 62
+W +G GLW IWLL+ A+ L F L + +IS+ + + ++ +
Sbjct: 32 AWTAALGVAGLWSIWLLVPLAIILVPFNL---TPMRKSMISAPVFRGFRKV 79
>sp|Q7VLW2|UVRA_HAEDU UvrABC system protein A OS=Haemophilus ducreyi (strain 35000HP /
ATCC 700724) GN=uvrA PE=3 SV=1
Length = 942
Score = 31.2 bits (69), Expect = 4.5, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 8/133 (6%)
Query: 14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLRYLAIV 73
ACQ G +I + +HF D++ H C + Y + + RYK I ++ + +
Sbjct: 741 ACQ----GDGVIKVEMHFLPDVYVPCDH--CKGKRYNRET-LEVRYKGKTIHQVLEMTVE 793
Query: 74 IESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESN 133
E IPA+ + LQ L+D+G+ ++ L + L E+ KL + G++
Sbjct: 794 EAREFFDAIPAIARKLQTLIDVGLSYIRLGQSSTTL-SGGEAQRVKLATELSKRDTGKTL 852
Query: 134 LLLDHKHITLEFA 146
+LD L FA
Sbjct: 853 YILDEPTTGLHFA 865
>sp|Q12063|UPPS_YEAST Probable undecaprenyl pyrophosphate synthase OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NUS1 PE=1
SV=1
Length = 375
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 87 QLLQWLVDIGVKHVCLYDAEGILKKS 112
+++ W V G+KH+ LYD +GIL+++
Sbjct: 181 EIVCWTVSAGIKHLMLYDYDGILQRN 206
>sp|P08964|MYO1_YEAST Myosin-1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=MYO1 PE=1 SV=3
Length = 1928
Score = 30.8 bits (68), Expect = 5.8, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 101 CLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAAN 160
C AE LKK ++ KL +T EA S+LL H T + K+A++ A
Sbjct: 1598 CSLKAETNLKKEFATLKYKLETSTNDSEAKISDLLKQLDHYTKVVEMLNNEKDAISLAEK 1657
Query: 161 LLFMKYVKLGGSGKIQEEKIFTEAHMSEALRA 192
L+ KY L + + KI + + + L +
Sbjct: 1658 ELYQKYEALNTECESLKGKIVSLTKIKQELES 1689
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 30.8 bits (68), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 40 LHIACAIESYLISSGILKRYKALDIDKLRYLAIVIESEEAYHIP--AVIQLLQWLVDIGV 97
L +ACA+E +S IL +D KLR I S H+ A + LL +
Sbjct: 77 LDLACAVEMVHAASLILDDMPCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGV-- 134
Query: 98 KHVCLYDAEGILKKSKESILGKLNNA 123
+ DA+G+ +K + +L+NA
Sbjct: 135 ----IADADGLTPLAKNRAVSELSNA 156
>sp|Q99LJ8|NGBR_MOUSE Nogo-B receptor OS=Mus musculus GN=Nus1 PE=2 SV=1
Length = 297
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 58 RYKALDIDKLRYLAI-----VIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKS 112
R++A D+ L+ L + V E + + L+ W + +G+ ++ +YD +GI K++
Sbjct: 90 RWRA-DVRSLQKLPVHMGLLVTEEVQEPSFSDIASLVVWCMAVGISYISVYDHQGIFKRN 148
Query: 113 KESILGKL 120
++ ++
Sbjct: 149 NSRLMDEI 156
>sp|Q87LA0|UVRA_VIBPA UvrABC system protein A OS=Vibrio parahaemolyticus serotype O3:K6
(strain RIMD 2210633) GN=uvrA PE=3 SV=1
Length = 940
Score = 30.8 bits (68), Expect = 6.7, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 5/90 (5%)
Query: 58 RYKALDIDKLRYLAIVIESEEAYH--IPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKES 115
RYK ID++ L + +E + +PA+ + LQ L+D+G+ ++ L A L E+
Sbjct: 778 RYKGKTIDEV--LEMTVEDARTFFDPVPAIARKLQTLMDVGLSYIRLGQAATTL-SGGEA 834
Query: 116 ILGKLNNATLFEEAGESNLLLDHKHITLEF 145
KL + G++ +LD L F
Sbjct: 835 QRVKLARELSKRDTGKTLYILDEPTTGLHF 864
>sp|Q9HB20|PKHA3_HUMAN Pleckstrin homology domain-containing family A member 3 OS=Homo
sapiens GN=PLEKHA3 PE=1 SV=2
Length = 300
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 47/103 (45%), Gaps = 13/103 (12%)
Query: 65 DKLRYLAIVIESEEAYHIPAV--IQLLQWLVDIGVKHVCLYDA----EGILKKSKESILG 118
D R + ++I E+ +++ AV + +WLV +G CL D E + ++ ES+
Sbjct: 57 DNTR-MELIIPGEQHFYMKAVNAAERQRWLVALGSSKACLTDTRTKKEKEISETSESLKT 115
Query: 119 KLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANL 161
K++ L+ +LL+ H EF D + A N+
Sbjct: 116 KMSELRLY-----CDLLMQQVHTIQEFVHH-DENHSSPSAENM 152
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,686,755
Number of Sequences: 539616
Number of extensions: 2839971
Number of successful extensions: 9062
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 9050
Number of HSP's gapped (non-prelim): 27
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 58 (26.9 bits)