Query 028893
Match_columns 202
No_of_seqs 29 out of 31
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 04:11:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2818 Predicted undecaprenyl 99.3 1.8E-10 3.9E-15 102.6 14.6 126 64-195 62-205 (263)
2 PRK14829 undecaprenyl pyrophos 98.7 7.4E-08 1.6E-12 84.5 8.1 122 66-192 14-180 (243)
3 PRK14831 undecaprenyl pyrophos 98.6 1.9E-07 4.1E-12 82.3 9.2 121 67-192 21-186 (249)
4 PRK14830 undecaprenyl pyrophos 98.5 7.9E-07 1.7E-11 78.5 9.7 122 66-192 22-188 (251)
5 PRK14827 undecaprenyl pyrophos 98.4 8.5E-07 1.9E-11 80.3 8.5 122 67-193 68-234 (296)
6 PRK14836 undecaprenyl pyrophos 98.4 7.1E-07 1.5E-11 79.0 7.5 122 66-192 14-180 (253)
7 PRK14828 undecaprenyl pyrophos 98.4 1.3E-06 2.8E-11 77.4 9.1 127 66-193 26-195 (256)
8 cd00475 CIS_IPPS Cis (Z)-Isopr 98.3 2E-06 4.4E-11 74.6 7.2 121 67-192 1-166 (221)
9 PRK14834 undecaprenyl pyrophos 98.3 6E-06 1.3E-10 73.0 9.8 125 63-192 10-180 (249)
10 PRK14840 undecaprenyl pyrophos 98.2 1E-05 2.2E-10 71.8 8.8 123 66-193 18-189 (250)
11 PRK14842 undecaprenyl pyrophos 97.9 5.6E-05 1.2E-09 66.7 8.9 125 66-194 8-177 (241)
12 PF01255 Prenyltransf: Putativ 97.8 7E-05 1.5E-09 64.4 8.0 108 82-194 24-164 (223)
13 PRK14832 undecaprenyl pyrophos 97.7 0.0002 4.2E-09 63.8 9.2 121 66-191 18-183 (253)
14 PRK10240 undecaprenyl pyrophos 97.7 0.00023 5E-09 62.3 8.3 106 81-191 22-158 (229)
15 PRK14835 undecaprenyl pyrophos 97.6 0.00028 6.1E-09 63.4 9.0 126 66-192 41-213 (275)
16 PRK14841 undecaprenyl pyrophos 97.6 0.0004 8.7E-09 61.0 9.3 120 66-192 3-167 (233)
17 PRK14838 undecaprenyl pyrophos 97.5 0.00035 7.6E-09 61.7 8.0 122 66-192 10-174 (242)
18 COG0020 UppS Undecaprenyl pyro 97.5 0.00053 1.2E-08 60.7 9.1 123 65-192 15-182 (245)
19 PRK14833 undecaprenyl pyrophos 97.4 0.00088 1.9E-08 58.9 8.8 120 66-191 4-168 (233)
20 TIGR00055 uppS undecaprenyl di 97.4 0.00097 2.1E-08 58.5 8.8 109 81-194 28-167 (226)
21 PRK14837 undecaprenyl pyrophos 97.3 0.0012 2.6E-08 58.1 7.9 120 66-194 6-170 (230)
22 PRK14839 undecaprenyl pyrophos 96.9 0.0031 6.8E-08 55.9 7.4 117 61-190 4-165 (239)
23 PTZ00349 dehydrodolichyl dipho 96.1 0.036 7.8E-07 51.3 8.8 100 67-166 20-177 (322)
24 KOG1602 Cis-prenyltransferase 92.5 0.68 1.5E-05 42.2 8.1 111 60-170 29-188 (271)
25 COG0218 Predicted GTPase [Gene 70.5 36 0.00079 29.8 8.7 93 64-167 104-197 (200)
26 PF13669 Glyoxalase_4: Glyoxal 47.9 74 0.0016 23.2 5.8 43 140-196 47-89 (109)
27 PRK09437 bcp thioredoxin-depen 47.0 91 0.002 24.0 6.5 49 55-111 53-101 (154)
28 KOG3415 Putative Rab5-interact 46.7 64 0.0014 26.7 5.7 48 5-60 39-86 (129)
29 PF00808 CBFD_NFYB_HMF: Histon 46.4 6.5 0.00014 27.3 -0.0 43 148-190 22-65 (65)
30 cd02969 PRX_like1 Peroxiredoxi 43.9 62 0.0013 25.6 5.2 54 56-109 48-101 (171)
31 cd01886 EF-G Elongation factor 39.7 2.7E+02 0.0058 24.6 9.6 52 69-121 90-141 (270)
32 PF00578 AhpC-TSA: AhpC/TSA fa 37.0 82 0.0018 22.8 4.6 47 59-113 52-98 (124)
33 PF01935 DUF87: Domain of unkn 35.8 37 0.0008 28.0 2.9 51 61-113 15-68 (229)
34 PF05225 HTH_psq: helix-turn-h 35.0 33 0.00072 22.8 2.0 16 182-197 1-16 (45)
35 cd08348 BphC2-C3-RGP6_C_like T 34.2 1.4E+02 0.003 21.9 5.5 65 67-158 66-130 (134)
36 PF14848 HU-DNA_bdg: DNA-bindi 33.6 81 0.0017 24.8 4.3 88 65-158 15-117 (124)
37 cd08362 BphC5-RrK37_N_like N-t 31.0 1.3E+02 0.0029 21.3 4.8 29 67-100 59-87 (120)
38 PF10662 PduV-EutP: Ethanolami 30.9 1.2E+02 0.0025 25.1 5.0 41 68-108 91-134 (143)
39 cd07239 BphC5-RK37_C_like C-te 29.7 1.1E+02 0.0024 23.8 4.5 31 65-100 58-88 (144)
40 cd04170 EF-G_bact Elongation f 28.6 3.7E+02 0.0081 22.9 9.6 53 69-122 90-142 (268)
41 cd03174 DRE_TIM_metallolyase D 28.5 77 0.0017 26.6 3.6 44 80-123 143-187 (265)
42 PF03668 ATP_bind_2: P-loop AT 27.9 1.2E+02 0.0026 27.9 5.0 39 65-103 49-87 (284)
43 cd07255 Glo_EDI_BRP_like_12 Th 27.0 1.3E+02 0.0028 21.6 4.2 29 66-99 64-92 (125)
44 PF02969 TAF: TATA box binding 26.9 1.2E+02 0.0025 22.2 3.8 11 181-191 56-66 (66)
45 PRK07328 histidinol-phosphatas 26.8 98 0.0021 26.9 4.1 34 72-106 224-261 (269)
46 KOG3378 Globins and related he 26.4 11 0.00025 35.5 -1.8 38 64-102 51-88 (385)
47 TIGR01460 HAD-SF-IIA Haloacid 24.3 33 0.00072 29.1 0.7 48 101-158 1-48 (236)
48 PF06936 Selenoprotein_S: Sele 23.6 32 0.00069 29.8 0.5 36 11-46 23-58 (190)
49 cd09013 BphC-JF8_N_like N-term 22.9 1.9E+02 0.004 20.9 4.4 29 66-99 62-90 (121)
50 PF08477 Miro: Miro-like prote 22.7 1.2E+02 0.0027 21.6 3.4 33 64-96 71-103 (119)
51 PRK15412 thiol:disulfide inter 22.3 91 0.002 25.4 2.9 85 66-169 97-182 (185)
52 PF14647 FAM91_N: FAM91 N-term 22.1 71 0.0015 29.9 2.4 33 161-198 94-126 (308)
53 cd08351 ChaP_like ChaP, an enz 21.9 2E+02 0.0044 20.9 4.5 28 66-99 58-85 (123)
54 cd09012 Glo_EDI_BRP_like_24 Th 21.4 1.4E+02 0.0031 21.7 3.5 27 69-100 71-97 (124)
55 cd07265 2_3_CTD_N N-terminal d 20.7 2.3E+02 0.0051 20.3 4.6 30 66-100 61-90 (122)
56 KOG2148 Exocyst protein Sec3 [ 20.5 87 0.0019 32.7 2.9 97 61-171 31-130 (867)
57 cd08360 MhqB_like_C C-terminal 20.4 2.3E+02 0.0049 21.2 4.5 30 65-99 61-90 (134)
58 PF01146 Caveolin: Caveolin; 20.0 5.3E+02 0.011 21.6 8.0 54 8-62 68-121 (148)
No 1
>KOG2818 consensus Predicted undecaprenyl diphosphate synthase [Lipid transport and metabolism]
Probab=99.25 E-value=1.8e-10 Score=102.59 Aligned_cols=126 Identities=19% Similarity=0.251 Sum_probs=103.2
Q ss_pred ccCcceEEEEEecccc--cChHHHHHHHHHHHHhccceeEEecccchhhhchhHHHhhcc--cCC-----------cccc
Q 028893 64 IDKLRYLAIVIESEEA--YHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN--NAT-----------LFEE 128 (202)
Q Consensus 64 ~~kl~~LaiVvdseea--~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~--n~~-----------~~~~ 128 (202)
.++|+||++||..-+. -++++.++++.|+.++||||++|||..|.+|++-.....++. +++ .++.
T Consensus 62 ~k~p~hl~lvI~~v~~~~~~~~da~~~v~w~v~~gik~~~lyd~~g~~~r~~~~~~~~I~s~la~~~g~~~~~~~~~~~~ 141 (263)
T KOG2818|consen 62 KKGPKHLALVIHPVEDGEGSFSDASSIVFWAVTVGIKYLSLYDRVGIKKRNMPVVRDEIISHLANYFGLDEPTLAVTIKL 141 (263)
T ss_pred hhcchhheEEEEecccCCceehhhHHHHHHHHHhccceeeHHHHHHHhccCcHHHHHHHHHhhhhhcCCCCCcccccCCC
Confidence 7888999999888555 589999999999999999999999999999999999999985 443 3444
Q ss_pred cccccccccCCceEEEeecCCCCH---HHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHHhcc
Q 028893 129 AGESNLLLDHKHITLEFASFPDGK---EAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAK 195 (202)
Q Consensus 129 aN~k~~~~~~~~MtlE~LS~sDGK---EaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG~ 195 (202)
+|+.+.+.+.+++.+-.+|.+||+ -++.++++.+|..+.++-... -.|=..|+.-|+.-++
T Consensus 142 snD~~nQ~~~~~L~~~~~s~~DGr~~i~Dl~r~i~~~~~~~~~~~~~~------~itve~vds~l~e~~~ 205 (263)
T KOG2818|consen 142 SNDEPNQEDKCKLGTHAISLEDGRMIIIDLTRLIQELCYLYELYRSET------DITVETVDSELKEFVE 205 (263)
T ss_pred CCCCcccccccchhheecccccccHHHHHHHHHHHHHHHHHHHhCCCc------cccHHHHHHHHHhcCC
Confidence 888888899999999999999999 555678888888777333322 2677888888887443
No 2
>PRK14829 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.67 E-value=7.4e-08 Score=84.54 Aligned_cols=122 Identities=20% Similarity=0.221 Sum_probs=87.8
Q ss_pred CcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEecc-cchhhhchh------HHHhhc----
Q 028893 66 KLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKE------SILGKL---- 120 (202)
Q Consensus 66 kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD~-~GvLKks~e------~l~~~~---- 120 (202)
-|+|+||+-|.- =| .=..++.+++.||...||+||++|+- .+.+|++.+ .++.+.
T Consensus 14 ~P~HvaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~iv~~c~~~gI~~vTvYaFS~eN~kR~~~Ev~~lm~L~~~~l~~~ 93 (243)
T PRK14829 14 LPRHIAVVMDGNGRWATQRGLKRTEGHKAGEPVLFDVVAGAIEAGVPYLSLYTFSTENWKRSPDEVRFLMGFSRDVIHRR 93 (243)
T ss_pred CCCeEEEecCCCHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhCCCHHHHHHHHHHHHHHHHHH
Confidence 378999999971 11 13568899999999999999999995 889999987 444322
Q ss_pred ----ccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 121 ----NNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 121 ----~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
.+. ..+|. ..-...+..+..|+|+++.+-+|++.|+.|++.++++..++.-+.+ .
T Consensus 94 ~~~~~~~~iri~~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~g~~~~~-----~ 168 (243)
T PRK14829 94 REQMDEWGVRVRWSGRRPRLWKSVIDELEAAEELTKNNTTMDLVFCVNYGGRAEIADAAAAIAREVRDGKISGD-----R 168 (243)
T ss_pred HHHHHHcCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChH-----h
Confidence 111 12221 1111235667889999999999999999999999987654433222 3
Q ss_pred cchHhHHHHHHH
Q 028893 181 FTEAHMSEALRA 192 (202)
Q Consensus 181 fTEadm~eALka 192 (202)
+||..++..|-.
T Consensus 169 i~e~~i~~~L~~ 180 (243)
T PRK14829 169 VTEKMISDHLYN 180 (243)
T ss_pred CCHHHHHHHhcc
Confidence 788888888764
No 3
>PRK14831 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.62 E-value=1.9e-07 Score=82.32 Aligned_cols=121 Identities=14% Similarity=0.188 Sum_probs=87.3
Q ss_pred cceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEeccc-chhhhchhHH------Hh-------
Q 028893 67 LRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYDAE-GILKKSKESI------LG------- 118 (202)
Q Consensus 67 l~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD~~-GvLKks~e~l------~~------- 118 (202)
|+|+||+-|. +=| .-..++.+++.||...||++|+||.-. ..+|++.+.+ +.
T Consensus 21 P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~vT~yaFS~eN~kR~~~Ev~~Lm~L~~~~l~~~~ 100 (249)
T PRK14831 21 PKHVAVIMDGNGRWAKRRGLPRIMGHRRGVDALKDLLRCCKDWGIGALTAYAFSTENWSRPLEEVNFLMTLFERVLRREL 100 (249)
T ss_pred CCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 7899999997 111 235789999999999999999999965 8889887432 21
Q ss_pred -hcc-cC---------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028893 119 -KLN-NA---------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (202)
Q Consensus 119 -~~~-n~---------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f 181 (202)
.+. +. ..+|. ......+-.+.+++|+++.+-+|++.|+.|++.++++..++.-+.++ +
T Consensus 101 ~~~~~~~iri~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EIv~A~~~l~~~v~~g~l~~~~-----i 175 (249)
T PRK14831 101 EELMEENVRIRFVGDLDPLPKSLQEEISRSTELTKNNNGIHFNVCTNYGGRQEIVQAARAIAQQVQQGELDPSE-----I 175 (249)
T ss_pred HHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHh-----C
Confidence 111 11 12222 11123366788999999999999999999999999987654433322 7
Q ss_pred chHhHHHHHHH
Q 028893 182 TEAHMSEALRA 192 (202)
Q Consensus 182 TEadm~eALka 192 (202)
||..+++.|-.
T Consensus 176 ~e~~~~~~L~t 186 (249)
T PRK14831 176 DENLFESELYT 186 (249)
T ss_pred CHHHHHHhhcc
Confidence 88888888753
No 4
>PRK14830 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.49 E-value=7.9e-07 Score=78.53 Aligned_cols=122 Identities=17% Similarity=0.209 Sum_probs=85.9
Q ss_pred CcceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchh---HHHh---------
Q 028893 66 KLRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKE---SILG--------- 118 (202)
Q Consensus 66 kl~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e---~l~~--------- 118 (202)
.|+|+||+.|... . .=..++.+++.||...||++|++|. ..-.+|++.+ .+|+
T Consensus 22 ~P~HVAiImDGNrRwAk~~gl~~~~Gh~~G~~~l~~~l~~c~~~GI~~vTvYaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~ 101 (251)
T PRK14830 22 IPKHIAIIMDGNGRWAKKRMLPRIAGHKAGMDTVKKITKAASELGVKVLTLYAFSTENWKRPKDEVKFLMNLPVEFLDKF 101 (251)
T ss_pred CCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999942 2 2467999999999999999999998 5556677755 3332
Q ss_pred --hcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 119 --KLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 119 --~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
.+.+. ..+|. ..-...+-.+.+++|+++.+-+|+..|+.|++.++++...+.-+.+ -
T Consensus 102 ~~~~~~~~iri~viG~~~~Lp~~~~~~~~~~e~~T~~~~~~~Lnia~~YggR~EI~~A~~~~~~~v~~g~l~~~-----~ 176 (251)
T PRK14830 102 VPELIENNVKVNVIGDTDRLPEHTLRALEKAIEKTKNNTGLILNFALNYGGRAEIVSAVKEIAKDVLDGKLNPE-----D 176 (251)
T ss_pred HHHHHHcCCEEEEEcChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChH-----h
Confidence 11111 12222 0111235568889999999999999999999999988744332222 3
Q ss_pred cchHhHHHHHHH
Q 028893 181 FTEAHMSEALRA 192 (202)
Q Consensus 181 fTEadm~eALka 192 (202)
+||..+++.|..
T Consensus 177 I~e~~i~~~L~~ 188 (251)
T PRK14830 177 ITEELISNYLMT 188 (251)
T ss_pred CCHHHHHHHhCc
Confidence 788888888853
No 5
>PRK14827 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.43 E-value=8.5e-07 Score=80.25 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=88.1
Q ss_pred cceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEecc-cchhhhchhH------HHhhc-cc--
Q 028893 67 LRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKES------ILGKL-NN-- 122 (202)
Q Consensus 67 l~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD~-~GvLKks~e~------l~~~~-~n-- 122 (202)
|+|+||+-|.- =| .-..++.+.+.||..+||+||+||.- ...+|++.+. ++++. +.
T Consensus 68 P~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~v~~~c~~lGI~~lTvYaFStEN~kR~~~EV~~Lm~L~~~~l~~~~ 147 (296)
T PRK14827 68 PNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRRR 147 (296)
T ss_pred CCeEEEeccCchHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHcCCCEEEEeeecchhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 67999999971 11 12567889999999999999999995 8889999876 32222 11
Q ss_pred -----CC----------cccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028893 123 -----AT----------LFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (202)
Q Consensus 123 -----~~----------~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f 181 (202)
.+ ..|. . .....+-.+.+|+|+++..-+|+..|+.|++.++++..++.-..++ +
T Consensus 148 ~~~~~~~irir~iG~~~~Lp~~v~~~i~~~e~~T~~n~~~~Lnia~~YgGR~EI~~A~~~i~~~v~~g~l~~~~-----I 222 (296)
T PRK14827 148 DNLNKMGVRIRWVGSRPRLWRSVINELAIAEEMTKSNDVITINYCVNYGGRTEITEATREIAREAAAGRLNPER-----I 222 (296)
T ss_pred HHHHHCCcEEEEEechhhCCHHHHHHHHHHHHHhcCCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhh-----c
Confidence 10 1111 0 0112366788999999999999999999999999987655443333 7
Q ss_pred chHhHHHHHHHh
Q 028893 182 TEAHMSEALRAV 193 (202)
Q Consensus 182 TEadm~eALkaV 193 (202)
||..+++-|..-
T Consensus 223 ~e~~i~~~L~t~ 234 (296)
T PRK14827 223 TESTIARHLQRP 234 (296)
T ss_pred cHHHHHHHhccC
Confidence 888888887653
No 6
>PRK14836 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.42 E-value=7.1e-07 Score=78.97 Aligned_cols=122 Identities=17% Similarity=0.236 Sum_probs=85.7
Q ss_pred CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH---Hh---------
Q 028893 66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI---LG--------- 118 (202)
Q Consensus 66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l---~~--------- 118 (202)
-|+|+||+.|.. +. .=..++.+++.||...||++|++|. ..-.+|+.++.+ |+
T Consensus 14 ~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~~~~iv~~c~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~ 93 (253)
T PRK14836 14 IPRHIAIIMDGNGRWAKRRGKPRVEGHRAGVRAVRRTIEFCLEKGIEMLTLFAFSSENWLRPADEVSALMELFLKALDRE 93 (253)
T ss_pred CCCeEEEecCCcHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEehhHhhhhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999983 12 2478999999999999999999998 555557766532 11
Q ss_pred --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
++. + ...+|. .+....+-.+.+++|+++..=+|++.|+.|++.++++...+.-+. ..
T Consensus 94 ~~~~~~~~irv~viG~~~~Lp~~~~~~i~~~e~~T~~n~~~~Lnla~~YggR~EI~~A~k~l~~~~~~g~l~~-----~~ 168 (253)
T PRK14836 94 VDKLHRNGIRVRFIGDRSRLSPKLQERMEYAERLTASNTRLILSLAVSYGGRWDIVTAARALAREVAAGKLAP-----DE 168 (253)
T ss_pred HHHHHHCCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCCh-----Hh
Confidence 111 1 112222 111233567788999999999999999999999998875433222 23
Q ss_pred cchHhHHHHHHH
Q 028893 181 FTEAHMSEALRA 192 (202)
Q Consensus 181 fTEadm~eALka 192 (202)
+||..++.-|-.
T Consensus 169 i~e~~i~~~L~~ 180 (253)
T PRK14836 169 IDEALLAQHLAL 180 (253)
T ss_pred CCHHHHHHHhcc
Confidence 888888887753
No 7
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.42 E-value=1.3e-06 Score=77.41 Aligned_cols=127 Identities=17% Similarity=0.197 Sum_probs=87.5
Q ss_pred CcceEEEEEecc---------cc------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhhc----cc
Q 028893 66 KLRYLAIVIESE---------EA------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGKL----NN 122 (202)
Q Consensus 66 kl~~LaiVvdse---------ea------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~~----~n 122 (202)
-|+|+||+.|.- +. .-..++.+++.||...||++|++|. ..-.+|++.+. +|+-+ ++
T Consensus 26 ~P~HvAiImDGNrRwA~~~gl~~~~~GH~~G~~~l~~~~~~~~~~gIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~ 105 (256)
T PRK14828 26 VPGHVGIIVDGNRRWARKAGFTDVSQGHRAGAAKIGEFLGWCDETDVNVVTLYLLSTDNLGRPSEELNPLLDIIEDVVRQ 105 (256)
T ss_pred CCCEEEEEecCChHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 478999999983 11 2357899999999999999999998 34455666522 22111 11
Q ss_pred ---C-----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcc
Q 028893 123 ---A-----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT 182 (202)
Q Consensus 123 ---~-----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fT 182 (202)
. ..+|. ......+..+.+|+|+++.+-+||+.|++|++.++++..++.-+.++. ...+|
T Consensus 106 ~~~~~~irv~~iG~~~~lp~~~~~~~~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~~~~-~~~i~ 184 (256)
T PRK14828 106 LAPDGRWRVRHVGSLDLLPAPSANRLKEAEEATVGNDGIKVNVAVGYGGRQEIVDAVRSLLTEHKDKGTSIDEL-AESVT 184 (256)
T ss_pred HHHhCCeEEEEECChhhCCHHHHHHHHHHHHhhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHhCCCChhhc-cccCC
Confidence 1 11222 011134677888999999999999999999999999987654433221 22478
Q ss_pred hHhHHHHHHHh
Q 028893 183 EAHMSEALRAV 193 (202)
Q Consensus 183 Eadm~eALkaV 193 (202)
|..++..|-..
T Consensus 185 e~~i~~~L~~~ 195 (256)
T PRK14828 185 VDAISTHLYTG 195 (256)
T ss_pred HHHHHHHhccC
Confidence 89999888543
No 8
>cd00475 CIS_IPPS Cis (Z)-Isoprenyl Diphosphate Synthases (cis-IPPS); homodimers which catalyze the successive 1'-4 condensation of the isopentenyl diphosphate (IPP) molecule to trans,trans-farnesyl diphosphate (FPP) or to cis,trans-FPP to form long-chain polyprenyl diphosphates. A few can also catalyze the condensation of IPP to trans-geranyl diphosphate to form the short-chain cis,trans- FPP. In prokaryotes, the cis-IPPS, undecaprenyl diphosphate synthase (UPP synthase) catalyzes the formation of the carrier lipid UPP in bacterial cell wall peptidooglycan biosynthesis. Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl diphosphate (dedol-PP) synthase catalyzes the formation of the polyisoprenoid glycosyl carrier lipid dolichyl monophosphate. cis-IPPS are mechanistically and structurally distinct from trans-IPPS, lacking the DDXXD motifs, yet requiring Mg2+ for activity.
Probab=98.29 E-value=2e-06 Score=74.61 Aligned_cols=121 Identities=17% Similarity=0.257 Sum_probs=81.1
Q ss_pred cceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEe------------cccchhhhchhHHHhhc
Q 028893 67 LRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLY------------DAEGILKKSKESILGKL 120 (202)
Q Consensus 67 l~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lY------------D~~GvLKks~e~l~~~~ 120 (202)
|+|+||+-|. +=| .-..++.+++-||...||++|++| ..+++++=..+.+-+..
T Consensus 1 P~HvaiImDGNrRwA~~~gl~~~~GH~~G~~~~~~i~~~~~~~gI~~lTvyaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~ 80 (221)
T cd00475 1 PKHVAFIMDGNRRWAKQRGMDRIEGHKAGAEKLRDILRWCLELGVKEVTLYAFSTENWKRPKEEVDFLMELFRDVLRRIL 80 (221)
T ss_pred CCeEEEecCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhhCcCHHHHHHHHHHHHHHHHHHH
Confidence 6899999887 111 135688999999999999999999 44444433333332222
Q ss_pred ---ccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028893 121 ---NNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (202)
Q Consensus 121 ---~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f 181 (202)
.+. ..+|. ..-...+..+.+|+|+++++-||++.|+.|++.++++..+..-+..+ +
T Consensus 81 ~~~~~~~i~vr~iGd~~~Lp~~~~~~~~~~e~~T~~~~~~~lni~~~Y~gr~eI~~a~~~~~~~~~~~~~~~~~-----i 155 (221)
T cd00475 81 KELEKLGVRIRIIGDLSLLPESLQKEIKKAEEATKNNTGFTLNVAFNYGGRQEIIHAVREIAEKVKAGKLTPED-----I 155 (221)
T ss_pred HHHHHCCcEEEEEeChhhCCHHHHHHHHHHHHHhccCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHh-----C
Confidence 111 12332 11112355688899999999999999999999999887654433222 7
Q ss_pred chHhHHHHHHH
Q 028893 182 TEAHMSEALRA 192 (202)
Q Consensus 182 TEadm~eALka 192 (202)
||..++.-|..
T Consensus 156 ~~~~~~~~L~~ 166 (221)
T cd00475 156 DESTLNKHLYT 166 (221)
T ss_pred CHHHHHHhhCc
Confidence 77777777653
No 9
>PRK14834 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.27 E-value=6e-06 Score=73.04 Aligned_cols=125 Identities=14% Similarity=0.185 Sum_probs=86.5
Q ss_pred cccC-cceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HH------
Q 028893 63 DIDK-LRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---IL------ 117 (202)
Q Consensus 63 ~~~k-l~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~------ 117 (202)
+.+. |+|+||+.|.-- . +-..++.+++-||...||++|++|. ..-.+|+.++. ||
T Consensus 10 ~~~~~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lgI~~lTvYaFS~eN~~R~~~EV~~Lm~L~~~~ 89 (249)
T PRK14834 10 DAMSVPRHVAIIMDGNGRWAKARGLPRAAGHRAGVEALRRVVRAAGELGIGYLTLFAFSSENWSRPASEVSDLFGLLRLF 89 (249)
T ss_pred CCCCCCCeEEEEecCchHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 3344 679999999832 1 2357899999999999999999998 33344555432 21
Q ss_pred -----hhcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccc
Q 028893 118 -----GKLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ 176 (202)
Q Consensus 118 -----~~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~ 176 (202)
+.+.+. ..+|. ......+..+.+|+|++...=+|++.|++|++.++++..++.-+.+
T Consensus 90 l~~~~~~~~~~~iri~viGd~~~Lp~~l~~~i~~~e~~T~~~~~~~lnla~~Yggr~EI~~A~k~~~~~~~~g~~~~~-- 167 (249)
T PRK14834 90 IRRDLAELHRNGVRVRVIGERAGLEADICALLNEAEELTRNNTGLNLVIAFNYGSRDEIARAVRRLAREVAEGRLDPA-- 167 (249)
T ss_pred HHHHHHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHhhccCCceEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChh--
Confidence 222111 12222 1122346678899999999999999999999999998765544332
Q ss_pred cchhcchHhHHHHHHH
Q 028893 177 EEKIFTEAHMSEALRA 192 (202)
Q Consensus 177 ~~~~fTEadm~eALka 192 (202)
-+||..+++.|..
T Consensus 168 ---dI~e~~i~~~L~~ 180 (249)
T PRK14834 168 ---SIDAETISANLDT 180 (249)
T ss_pred ---hCCHHHHHHHhcc
Confidence 3888888888764
No 10
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=98.16 E-value=1e-05 Score=71.80 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=83.3
Q ss_pred CcceEEEEEec--cccc----------------ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH----------
Q 028893 66 KLRYLAIVIES--EEAY----------------HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI---------- 116 (202)
Q Consensus 66 kl~~LaiVvds--eea~----------------~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l---------- 116 (202)
-|+|+||+-|. +=|+ -..++.+++.||...||++|++|= ..-.+|++++.+
T Consensus 18 ~P~HVaiImDGNrRwAk~~~~~~gl~~~~GH~~G~~~l~~v~~~c~~~GIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~ 97 (250)
T PRK14840 18 LPRHVAIIMDGNRRWYRKHEQFCQKRAISGHYYGAKSLPQIVDTALHLGIEVLTLFAFSTENFSRSKEEVAELFSLFNSQ 97 (250)
T ss_pred CCCeEEEEcCCChHHHhhCCCccCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHH
Confidence 36799999998 2222 246788999999999999999996 333335554432
Q ss_pred ----Hhhcc-cC---------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccc
Q 028893 117 ----LGKLN-NA---------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ 176 (202)
Q Consensus 117 ----~~~~~-n~---------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~ 176 (202)
.+.+. +. ..+|+ .+-...+-.+.+|+|++..+-+|++.|+.|++.++++.-++.-+..
T Consensus 98 l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~~~~~~~-- 175 (250)
T PRK14840 98 LDSQLPYLHENEIRLRCIGDLSKLPQELQNNIEQASSATAHYSRMELVLAINYGGKDELVRAFKKLHQDLANKKISSD-- 175 (250)
T ss_pred HHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhccCCceEEEEEecCCcHHHHHHHHHHHHHHHHhCCCChh--
Confidence 22221 11 12333 1112346778889999999999999999999999998754433222
Q ss_pred cchhcchHhHHHHHHHh
Q 028893 177 EEKIFTEAHMSEALRAV 193 (202)
Q Consensus 177 ~~~~fTEadm~eALkaV 193 (202)
-+||..++..|..-
T Consensus 176 ---~i~~~~i~~~L~~~ 189 (250)
T PRK14840 176 ---DISEELISSYLDTS 189 (250)
T ss_pred ---hCCHHHHHHHhccC
Confidence 27788887777543
No 11
>PRK14842 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.92 E-value=5.6e-05 Score=66.74 Aligned_cols=125 Identities=16% Similarity=0.177 Sum_probs=85.1
Q ss_pred CcceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH--------------H
Q 028893 66 KLRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES--------------I 116 (202)
Q Consensus 66 kl~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~--------------l 116 (202)
-|+|+||+.|. +=| .=..++.+++.||...||++|++|= ..-.+|++++. .
T Consensus 8 ~P~HVaiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~lgI~~vTvYaFS~eN~~R~~~EV~~Lm~L~~~~l~~~ 87 (241)
T PRK14842 8 IPAHIAVIMDGNGRWAESQGKKRSEGHREGANAIDRLMDASLEYGLKNISLYAFSTENWKRPITEIRSIFGLLVEFIETR 87 (241)
T ss_pred CCCeEEEEcCCCHHHHHHCCCChhHhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 37899999997 111 2357899999999999999999997 33334555432 2
Q ss_pred HhhcccC----------Ccccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 117 LGKLNNA----------TLFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 117 ~~~~~n~----------~~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
.+.+.+. ..+|+ . +-...+-.+..|+|++.-.-+|++.|+.|++.++++.....-.. +..
T Consensus 88 ~~~~~~~~irv~~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~~~----~~~ 163 (241)
T PRK14842 88 LDTIHARGIRIHHSGSRKKLTRTVLDKIDFAMAKTKKNKNLTVNFCLNYGSHDELLRAAQEVFLARKAKKVTL----EKP 163 (241)
T ss_pred HHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCCc----ccc
Confidence 2222111 12333 1 11233667889999999999999999999999998875443321 113
Q ss_pred cchHhHHHHHHHhc
Q 028893 181 FTEAHMSEALRAVA 194 (202)
Q Consensus 181 fTEadm~eALkaVG 194 (202)
+||.+++..|-.-+
T Consensus 164 i~e~~~~~~L~t~~ 177 (241)
T PRK14842 164 LKEKEFEKFLYTSP 177 (241)
T ss_pred CCHHHHHHHhCcCC
Confidence 88999988886433
No 12
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=97.85 E-value=7e-05 Score=64.39 Aligned_cols=108 Identities=19% Similarity=0.294 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH---Hhhcc--------------cC---------Ccccc-----c
Q 028893 82 IPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI---LGKLN--------------NA---------TLFEE-----A 129 (202)
Q Consensus 82 ~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l---~~~~~--------------n~---------~~~~~-----a 129 (202)
..++.+++.||...||++|++|- ..-.+|++.+.+ |+-++ +. ..+|. .
T Consensus 24 ~~~l~~i~~~~~~~gI~~lTvYaFS~eN~~R~~~EV~~Lm~l~~~~l~~~~~~~~~~~~~irvr~iGd~~~Lp~~~~~~i 103 (223)
T PF01255_consen 24 AEKLKEIVEWCLELGIKYLTVYAFSTENWKRPKEEVDALMDLFERYLRELIDELNFHKNGIRVRVIGDLSLLPEELQKAI 103 (223)
T ss_dssp HHHHHHHHHHHHHCT-SEEEEEEEETTGGGS-HHHHHHHHHHHHHHHHHHHHHHH--HTTEEEEEES-GGGS-HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEEecchhhcCCHHHHHHHHHHHHHHHHHHhhhcchhhcCeeEEEEeccCcCCHHHHHHH
Confidence 56788999999999999999997 224447665542 32221 11 12222 1
Q ss_pred c-cccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHHhc
Q 028893 130 G-ESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVA 194 (202)
Q Consensus 130 N-~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG 194 (202)
+ -...+-.+.+|+|+++.+=+||+.|+.|++.++.++.+..-+..+ +||+.+++.|..-+
T Consensus 104 ~~~e~~T~~n~~l~Lnia~~Yggr~eI~~a~~~~~~~~~~~~~~~~~-----i~~~~i~~~L~~~~ 164 (223)
T PF01255_consen 104 AEAEEKTKNNTGLTLNIAINYGGRDEIVDAARKLAEEVQSGKLSPED-----IDEELISSHLYTPD 164 (223)
T ss_dssp HHHHHHHTTSSSEEEEEEECE-HHHHHHHHHHHHHHHHHTTSSGGGG------SHHHHHHTSTTTT
T ss_pred HHHHHhhccCcceeEEEEecCCcHHHHHHHHHHhhhhhccCcccccc-----CCHHHHHhhccccC
Confidence 1 112245678999999999999999999999999988766554433 88888888776544
No 13
>PRK14832 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.73 E-value=0.0002 Score=63.77 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=82.6
Q ss_pred CcceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------
Q 028893 66 KLRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI-------------- 116 (202)
Q Consensus 66 kl~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l-------------- 116 (202)
-|+|+||+-|. +=| +-..++.+++.||...||++|++|= ..-.+|++++.+
T Consensus 18 iP~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~gI~~lTvyaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~ 97 (253)
T PRK14832 18 IPQHIAVIMDGNGRWATSQGLPRIAGHRQGARTLKELLRCCKDWGIKALTAYAFSTENWQRPIEEVDFLMLLFERLLRRE 97 (253)
T ss_pred CCCEEEEECCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 37899999998 111 2357889999999999999999997 333335554432
Q ss_pred Hhhcc----------cCCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 117 LGKLN----------NATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 117 ~~~~~----------n~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
++++. +...+|. ......+..+.+++|+++-.=+|++.|+.|++.++.+.-.+.-+. ..
T Consensus 98 ~~~~~~~~irv~~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~~~~~v~~g~~~~-----~~ 172 (253)
T PRK14832 98 LAQMHREGVRISFIGDLSALPKSLQTEMERSMTETLNNQAIHFTVAVNYGSRNEITRACRQVAELVQQGKLSA-----DA 172 (253)
T ss_pred HHHHHhcCCEEEEEeCchhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCCh-----hh
Confidence 22221 1123333 112233677888999999999999999999999998764433222 23
Q ss_pred cchHhHHHHHH
Q 028893 181 FTEAHMSEALR 191 (202)
Q Consensus 181 fTEadm~eALk 191 (202)
+||..++..|-
T Consensus 173 i~e~~i~~~L~ 183 (253)
T PRK14832 173 VNEQLVEQHLY 183 (253)
T ss_pred CCHHHHHHhhC
Confidence 78888887775
No 14
>PRK10240 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.65 E-value=0.00023 Score=62.33 Aligned_cols=106 Identities=12% Similarity=0.189 Sum_probs=73.1
Q ss_pred ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------HhhcccC----------Ccccc------c
Q 028893 81 HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI--------------LGKLNNA----------TLFEE------A 129 (202)
Q Consensus 81 ~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l--------------~~~~~n~----------~~~~~------a 129 (202)
-..++.+++.||...||++|++|= ..-.+|++++.+ .+.+.+. ..+|. .
T Consensus 22 G~~~l~~i~~~c~~~GI~~lT~yaFS~eN~~R~~~Ev~~Lm~l~~~~l~~~~~~~~~~~i~vr~iG~~~~Lp~~l~~~i~ 101 (229)
T PRK10240 22 GAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIR 101 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEeeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCcEEEEEeChhhCCHHHHHHHH
Confidence 367889999999999999999996 223334544322 1112111 13333 1
Q ss_pred ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHH
Q 028893 130 GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALR 191 (202)
Q Consensus 130 N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALk 191 (202)
.....+..+.+|+|+++.+=+|++.|+.|++.++++..++.-+.++ +||..++.-|-
T Consensus 102 ~~e~~T~~~~~~~Lnla~~Yggr~EI~~A~~~~~~~v~~g~~~~~~-----i~e~~i~~~L~ 158 (229)
T PRK10240 102 KSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEQVQQGNLQPDQ-----IDEEMLNQHIC 158 (229)
T ss_pred HHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChhh-----CCHHHHHHHhc
Confidence 1122367788899999999999999999999999988766544333 78888887774
No 15
>PRK14835 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.64 E-value=0.00028 Score=63.38 Aligned_cols=126 Identities=17% Similarity=0.322 Sum_probs=80.4
Q ss_pred CcceEEEEEecccc--------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhh--------
Q 028893 66 KLRYLAIVIESEEA--------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGK-------- 119 (202)
Q Consensus 66 kl~~LaiVvdseea--------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~-------- 119 (202)
-|+|+||+.|.-.= +-..++.+++.||...||++|++|= ..-.+|++.+. ||+-
T Consensus 41 ~P~HVAiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~c~~lGIk~lTvYaFS~EN~~R~~~EV~~Lm~L~~~~l~~~ 120 (275)
T PRK14835 41 LPRHLGLILDGNRRFARALGLQREMGHEFGVQKAYEVLEWCLELGIPTVTIWVFSTDNFSRSPAEVETLMNLFEREARRM 120 (275)
T ss_pred CCCEEEEEecCchHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEEccccCCCHHHHHHHHHHHHHHHHHH
Confidence 36799999998221 1357889999999999999999996 22223444321 1111
Q ss_pred -----cc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccc
Q 028893 120 -----LN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEE 178 (202)
Q Consensus 120 -----~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~ 178 (202)
+. + ...+|. ..-...+-.+++++|++.-+=+|++.|+.|++.+.++...+.-+.++. .
T Consensus 121 ~~~~~~~~~~irir~iGd~~~Lp~~l~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~k~i~~~~~~g~~~~~~i-~ 199 (275)
T PRK14835 121 AVDPRIHANRVRVRAIGRHDGFPPKVLEALEELEERTEGHEGMLLNIAVGYGGREEIVDAVKSLLLEAAATGKSPEEV-A 199 (275)
T ss_pred hchhhhhhCCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCCeEEEEEeccCCHHHHHHHHHHHHHHHHcCCCChHHh-c
Confidence 11 0 011121 001123556788999999999999999999999998876543322221 1
Q ss_pred hhcchHhHHHHHHH
Q 028893 179 KIFTEAHMSEALRA 192 (202)
Q Consensus 179 ~~fTEadm~eALka 192 (202)
...||.++++.|-.
T Consensus 200 ~~~~e~~i~~~L~~ 213 (275)
T PRK14835 200 AELTPEHISAHLYT 213 (275)
T ss_pred ccCCHHHHHHHhcc
Confidence 12578888777743
No 16
>PRK14841 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.61 E-value=0.0004 Score=60.99 Aligned_cols=120 Identities=15% Similarity=0.222 Sum_probs=80.9
Q ss_pred CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------
Q 028893 66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI-------------- 116 (202)
Q Consensus 66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l-------------- 116 (202)
-|+|+||+.|.- +. .=..++.+++.||...|||+|++|= ..-.+|++++.+
T Consensus 3 ~P~HVaiImDGNrRwAk~~g~~~~~GH~~G~~~l~~i~~~~~~lgIk~lTvYaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~ 82 (233)
T PRK14841 3 IPQHVAIIMDGNGRWAKKRGLPRIKGHQRGAEVLHNTVKWSLELGIKYLTAFSFSTENWKRPKEEVEFLMDLFVQMIDRE 82 (233)
T ss_pred CCCEEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeeeHhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 488999999871 11 2357899999999999999999996 333345544332
Q ss_pred HhhcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 117 LGKLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 117 ~~~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
.+.+... ..+|. ..-...+-.+++++|++.-.=+|++.|+.|++.+..+..++.. ..
T Consensus 83 ~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Yggr~EI~~A~~~~~~~~~~~~~-------~~ 155 (233)
T PRK14841 83 MELLRRERVRVRILGRKEGLPEKVLKKWQEVEEKTKEFDRMTLVIAFNYGGRREILDAVESILKDVSQGKK-------IE 155 (233)
T ss_pred HHHHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHHHHHcCCc-------CC
Confidence 1222111 12232 1111235667889999999999999999999999987655432 13
Q ss_pred cchHhHHHHHHH
Q 028893 181 FTEAHMSEALRA 192 (202)
Q Consensus 181 fTEadm~eALka 192 (202)
.||..++.-|-.
T Consensus 156 i~~~~~~~~L~~ 167 (233)
T PRK14841 156 LTEETFRQYLYL 167 (233)
T ss_pred CCHHHHHHHhcc
Confidence 678888777753
No 17
>PRK14838 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.54 E-value=0.00035 Score=61.71 Aligned_cols=122 Identities=16% Similarity=0.137 Sum_probs=83.7
Q ss_pred CcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhhcc------
Q 028893 66 KLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGKLN------ 121 (202)
Q Consensus 66 kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~~~------ 121 (202)
-|+|+||+-|.- =| .=..++.+++.||...||++|++|= ..-.+|++++. ||+-+.
T Consensus 10 ~P~HVAiImDGNrRwA~~~gl~~~~GH~~G~~~l~~i~~~~~~~gI~~lT~YaFS~EN~kR~~~Ev~~Lm~l~~~~l~~~ 89 (242)
T PRK14838 10 IPQHIAIIMDGNGRWAKERGKERSFGHQAGAETVHIITEEAARLGVKFLTLYTFSTENWNRPSDEVAALMSLLLDSIEEE 89 (242)
T ss_pred CCCEEEEeccCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeechhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 378999999971 11 1256889999999999999999997 33344666543 222111
Q ss_pred -------------cCCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcc
Q 028893 122 -------------NATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFT 182 (202)
Q Consensus 122 -------------n~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fT 182 (202)
+...+|. ..-...+-.+.+|+|++.=.=+|++.|+.|++.++.+.....-+.++ +|
T Consensus 90 ~~~~~~irir~iG~~~~Lp~~l~~~i~~~e~~T~~~~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~~-----i~ 164 (242)
T PRK14838 90 TFMKNNIRFRIIGDIAKLPEEVQERLNECEEHTAKNTGMCLVLALSYSSRWEITEATRQIATLVQNGELNPEE-----IT 164 (242)
T ss_pred HHHHcCcEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEeecCCCHHHHHHHHHHHHHHHHhCCCChhh-----CC
Confidence 1112333 11123366788899999999999999999999999887554433222 78
Q ss_pred hHhHHHHHHH
Q 028893 183 EAHMSEALRA 192 (202)
Q Consensus 183 Eadm~eALka 192 (202)
|..+++.|-.
T Consensus 165 e~~~~~~L~~ 174 (242)
T PRK14838 165 EESISEHLTT 174 (242)
T ss_pred HHHHHHHhcc
Confidence 8888887753
No 18
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=97.53 E-value=0.00053 Score=60.72 Aligned_cols=123 Identities=22% Similarity=0.277 Sum_probs=86.9
Q ss_pred cCcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHHHh-----------
Q 028893 65 DKLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESILG----------- 118 (202)
Q Consensus 65 ~kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l~~----------- 118 (202)
.-|+|+||+.|.- =| .-...+.+++.|+..+|||+|++|. .....|+.++.+-.
T Consensus 15 ~~p~HvaiImDGN~RwAk~~~~~r~~Gh~~G~~~~~~i~~~~~~lgik~ltlyafSteN~~Rp~~Ev~~lm~l~~~~l~~ 94 (245)
T COG0020 15 RLPRHVAIIMDGNRRWAKKRGLPRIEGHKAGAKALREILEWCLELGIKYLTLYAFSTENWKRPKEEVSFLMELFEKALRE 94 (245)
T ss_pred ccccceEEEecCChHHHHhCCCChhHHHHHhHHHHHHHHHHHHHcCCCEEEEEEEehhhcCCCHHHHHHHHHHHHHHHHH
Confidence 4578999999982 11 2357888999999999999999998 23333666543221
Q ss_pred ---hc-ccC---------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccch
Q 028893 119 ---KL-NNA---------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (202)
Q Consensus 119 ---~~-~n~---------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~ 179 (202)
++ ++. +.+|. ......+..+..++|+++..=+|++.|+.|++.+.+++..+.-+.++
T Consensus 95 ~~~~l~~~~v~v~~iG~~~~l~~~~~~~i~~~e~~t~~~~~~~l~~a~nYGGR~eI~~avr~ia~~v~~g~l~~~~---- 170 (245)
T COG0020 95 ELKKLHKNGVRIRIIGDLSRLPEEVREAIEKAEEKTKNNTGLTLNIAVNYGGRDEIVDAVRKIAEDVAAGKLSPED---- 170 (245)
T ss_pred HHHHHhhcCeEEEEEeccccCCHHHHHHHHHHHHhccCCCceEEEEeeCCCCHHHHHHHHHHHHHHHHcCCCChHH----
Confidence 11 111 12222 11223366788999999999999999999999999999877765444
Q ss_pred hcchHhHHHHHHH
Q 028893 180 IFTEAHMSEALRA 192 (202)
Q Consensus 180 ~fTEadm~eALka 192 (202)
+||.-++.-|..
T Consensus 171 -I~e~~i~~~L~~ 182 (245)
T COG0020 171 -IDEELISSHLYT 182 (245)
T ss_pred -cCHHHHHHhhcc
Confidence 788877777766
No 19
>PRK14833 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.42 E-value=0.00088 Score=58.88 Aligned_cols=120 Identities=17% Similarity=0.179 Sum_probs=79.3
Q ss_pred CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---H-----------
Q 028893 66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---I----------- 116 (202)
Q Consensus 66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l----------- 116 (202)
-|+|+||+-|.- +. .-..++.+++.||...||++|++|= ..-.+|++.+. +
T Consensus 4 ~P~HVaiImDGNrRwA~~~gl~~~~GH~~G~~~l~~~~~~c~~~gI~~lTvyaFS~eN~~R~~~Ev~~Lm~L~~~~l~~~ 83 (233)
T PRK14833 4 TLKHLAIIMDGNGRWAKLRGKARAAGHKKGVKTLREITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKLLKKYLKDE 83 (233)
T ss_pred CCCeEEEEccCCHHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEeecchhhcCcCHHHHHHHHHHHHHHHHHH
Confidence 378999999871 11 2357899999999999999999996 22233444431 1
Q ss_pred HhhcccC----------Ccccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 117 LGKLNNA----------TLFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 117 ~~~~~n~----------~~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
.+.+.+. ..+|. . .-...+-.+.+|+|++.-.=+|++.|+.|++.+.++.....+ . ..
T Consensus 84 ~~~~~~~~irvr~iG~~~~Lp~~~~~~i~~~e~~T~~~~~~~Lnia~~Y~gr~EI~~A~~~~~~~~~~~~~-~-----~~ 157 (233)
T PRK14833 84 RSTYLENNIRFKAIGDLEGFSKELRDTILQLEEDTRSFKGFTQVLALNYGSKDEISRAFKKLLESPPSHIG-E-----LE 157 (233)
T ss_pred HHHHHhCCcEEEEEeChhhCCHHHHHHHHHHHHHccCCCceEEEEEecCCCHHHHHHHHHHHHHHhhcccC-c-----cc
Confidence 1222111 12222 1 112236677889999999999999999999999987521111 1 13
Q ss_pred cchHhHHHHHH
Q 028893 181 FTEAHMSEALR 191 (202)
Q Consensus 181 fTEadm~eALk 191 (202)
+||..+++.|-
T Consensus 158 i~e~~l~~~L~ 168 (233)
T PRK14833 158 SLEEEISNCLD 168 (233)
T ss_pred CCHHHHHHHhc
Confidence 78888887774
No 20
>TIGR00055 uppS undecaprenyl diphosphate synthase. Alternate name: undecaprenyl pyrophosphate synthetase. Activity has been demonstrated experimentally for members of this family from Micrococcus luteus, E. coli, Haemophilus influenzae, and Streptococcus pneumoniae.
Probab=97.39 E-value=0.00097 Score=58.47 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH--------------Hhhcc----------cCCcccc------c
Q 028893 81 HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI--------------LGKLN----------NATLFEE------A 129 (202)
Q Consensus 81 ~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l--------------~~~~~----------n~~~~~~------a 129 (202)
-...+.+.+.||...||++|++|= ..-.+|++++.+ .+.+. +...+|. .
T Consensus 28 G~~~~~~v~~~c~~~GI~~lT~yaFStEN~~Rp~~EV~~Lm~L~~~~l~~~~~~~~~~~irvr~iGd~~~Lp~~~~~~i~ 107 (226)
T TIGR00055 28 GVKSLRRILRWCANLGVECLTLYAFSTENWKRPKEEVDFLMELFEKKLDREVKELHRYNVRIRIIGDLSLLSKELQEKIK 107 (226)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEeehhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHH
Confidence 357889999999999999999997 333335544431 11111 1123333 1
Q ss_pred ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHHhc
Q 028893 130 GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVA 194 (202)
Q Consensus 130 N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG 194 (202)
.-...+..+.+|+|++.-.=+|++.|+.|++.++.+.....-..+ .+||..++.-|-.-+
T Consensus 108 ~~e~~T~~n~~~~lnia~~Yggr~EI~~A~~~~~~~~~~g~~~~~-----~i~e~~~~~~L~t~~ 167 (226)
T TIGR00055 108 KAEEDTKNNTDFTLNIAFNYGGRNEILHAVKQIAEKVKSGKLLPE-----DIDEETLNKHLYTAN 167 (226)
T ss_pred HHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHhCCCChh-----hCCHHHHHHhhccCC
Confidence 112236678899999999999999999999999988765443332 388988888875433
No 21
>PRK14837 undecaprenyl pyrophosphate synthase; Provisional
Probab=97.26 E-value=0.0012 Score=58.11 Aligned_cols=120 Identities=13% Similarity=0.216 Sum_probs=79.6
Q ss_pred CcceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHh---------
Q 028893 66 KLRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILG--------- 118 (202)
Q Consensus 66 kl~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~--------- 118 (202)
-|+|+||+.|. +=| +-..++.+.+.||...||++|+||= ..-.+|++++. ||+
T Consensus 6 ~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~~~~i~~~c~~~GI~~lT~YaFS~EN~~Rp~~EV~~Lm~L~~~~l~~~ 85 (230)
T PRK14837 6 LPSHVGIIMDGNRRWALKKGLSFFEGHKEGLKRAKEIVKHSLKLGIKYLSLYVFSTENWNRTDSEIEHLMFLIADYLSSE 85 (230)
T ss_pred CCCeEEEEccCCHHHHHHCCCchhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhcCCCHHHHHHHHHHHHHHHHHH
Confidence 37899999998 111 1356889999999999999999996 23333554442 111
Q ss_pred --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028893 119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
.+. + ...+|. .+-...+-.+.+|+|++.=.=.|++.|+.|++.++.. . .....
T Consensus 86 ~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~~~~~~~----~-----~~~~~ 156 (230)
T PRK14837 86 FNFYKKNNIKIIVSGDIESLSEEVKKSIKDAISFTKNFDGLVLNLAINYGGRNEIVRAVKKFLSS----G-----LDLET 156 (230)
T ss_pred HHHHHHCCcEEEEEcChhhCCHHHHHHHHHHHHHhcCCCCcEEEEEecCCCHHHHHHHHHHHHhc----C-----CChhh
Confidence 111 1 112232 1111236678899999999999999999999999842 1 11234
Q ss_pred cchHhHHHHHHHhc
Q 028893 181 FTEAHMSEALRAVA 194 (202)
Q Consensus 181 fTEadm~eALkaVG 194 (202)
+||..++..|-.-+
T Consensus 157 i~e~~~~~~L~~~~ 170 (230)
T PRK14837 157 LNENVFSKFLDNPE 170 (230)
T ss_pred CCHHHHHHhhccCC
Confidence 88888888875433
No 22
>PRK14839 undecaprenyl pyrophosphate synthase; Provisional
Probab=96.93 E-value=0.0031 Score=55.89 Aligned_cols=117 Identities=17% Similarity=0.269 Sum_probs=79.3
Q ss_pred hccccCcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHh----
Q 028893 61 ALDIDKLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILG---- 118 (202)
Q Consensus 61 ~l~~~kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~---- 118 (202)
+|+...|+|+||+-|.- +. .-..++.+++.||...||++|++|= ..-.+|++++. ||+
T Consensus 4 ~~~~~~P~HVAiImDGNrRwAk~~gl~~~~GH~~G~~~l~~i~~~c~~~GI~~lTvYaFS~EN~~R~~~EV~~Lm~L~~~ 83 (239)
T PRK14839 4 SLDRRSGLHVAIIMDGNGRWATARGLPRLAGHRAGVEAIRRVVEAAPDLGIGTLTLYAFSSDNWRRPAAEVGGLMRLLRA 83 (239)
T ss_pred ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEechhhcCCCHHHHHHHHHHHHH
Confidence 57788899999999971 11 1357889999999999999999997 33344555543 221
Q ss_pred -------hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCcc
Q 028893 119 -------KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (202)
Q Consensus 119 -------~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~ 175 (202)
.+. + ...+|. ..-...+..+++|+|++.=.=.|++.|+.|++.+. + .+
T Consensus 84 ~l~~~~~~~~~~~irvr~iGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~Yggr~EI~~A~k~~~-------~-~~- 154 (239)
T PRK14839 84 YLRNETERLARNGVRLTVIGRRDRLPDGIPEAIARAEAATAGGDRLHLRIAVDYSARDAILAAAAKAL-------G-PE- 154 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHhc-------C-cc-
Confidence 111 1 112222 11112366788999999999999999999999864 1 11
Q ss_pred ccchhcchHhHHHHH
Q 028893 176 QEEKIFTEAHMSEAL 190 (202)
Q Consensus 176 ~~~~~fTEadm~eAL 190 (202)
..||..+++-|
T Consensus 155 ----~i~e~~~~~~l 165 (239)
T PRK14839 155 ----GLSREAFSDLL 165 (239)
T ss_pred ----cCCHHHHHHHh
Confidence 26777777766
No 23
>PTZ00349 dehydrodolichyl diphosphate synthetase; Provisional
Probab=96.07 E-value=0.036 Score=51.32 Aligned_cols=100 Identities=12% Similarity=0.189 Sum_probs=68.5
Q ss_pred cceEEEEEec--ccc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH------H--------
Q 028893 67 LRYLAIVIES--EEA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI------L-------- 117 (202)
Q Consensus 67 l~~LaiVvds--eea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l------~-------- 117 (202)
|+|+||+.|. +=| .-...+.+.+.||...||++|++|= ..-.+||+++.+ +
T Consensus 20 P~HVAiIMDGNrRwAk~~gl~~~~GH~~G~~~l~~il~~c~~lGIk~lTlYAFStENwkRp~~EV~~Lm~L~~~~l~~~~ 99 (322)
T PTZ00349 20 IKHISIIMDGNRRFAKEKGLHSAIGHFMGSKALIQIIEICIKLKIKILSVFSFSLLNYNRSPEEIHFLFYLNLLILINED 99 (322)
T ss_pred CCcEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEeehhhhCCCHHHHHHHHHHHHHHHHHhh
Confidence 6799999998 111 1256889999999999999999997 333346665543 1
Q ss_pred ---hhcccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHH----------HHHHHHHHHH
Q 028893 118 ---GKLNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVA----------KAANLLFMKY 166 (202)
Q Consensus 118 ---~~~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIa----------KAAnlLc~~~ 166 (202)
+.+.+. ..+|. ..-...+-.+.+|+|++.=+=.|+..|+ .|++.+..+.
T Consensus 100 ~~~~~l~~~~irirviGd~~~Lp~~l~~~i~~~e~~T~~n~~~~Lnia~~YggR~EI~~~v~~~~~~~~A~~~~~~~~ 177 (322)
T PTZ00349 100 FFFKFIKDNKIKIKIIGNLSYINDAYRKIIHDIEEKTENFDNILLNIFFSYTSRNEMSLCKFNPNLYFDTYKNLLEEK 177 (322)
T ss_pred hhHHHHHHCCCEEEEEeChhhCCHHHHHHHHHHHHHhCCCCCcEEEEEecCCCHHHHHHhhcccchHHHHHHHHHHHh
Confidence 112111 12222 1112336778899999988888999999 7999988774
No 24
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=92.50 E-value=0.68 Score=42.24 Aligned_cols=111 Identities=15% Similarity=0.213 Sum_probs=74.8
Q ss_pred hhcc-ccCcceEEEEEecc--cc------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH-------
Q 028893 60 KALD-IDKLRYLAIVIESE--EA------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI------- 116 (202)
Q Consensus 60 ~~l~-~~kl~~LaiVvdse--ea------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l------- 116 (202)
+.++ --.|+|+|.+-|.. =| .-...++++|.||--+||++|++|- .--.+|++++..
T Consensus 29 ~~~~~g~~P~HVaFIMDGNRR~AKk~~L~~~~GH~aGf~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~ 108 (271)
T KOG1602|consen 29 RLLARGPMPRHVAFIMDGNRRYAKKRGLETSEGHEAGFEALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLA 108 (271)
T ss_pred HHHhcCCCcceeEEEecCchHHHHhcCCCcccchHHHHHHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHH
Confidence 4444 34678999999871 11 1467899999999999999999997 333556655432
Q ss_pred -------Hhhc-------------ccCCcccc-----c-ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcC
Q 028893 117 -------LGKL-------------NNATLFEE-----A-GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLG 170 (202)
Q Consensus 117 -------~~~~-------------~n~~~~~~-----a-N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~ 170 (202)
.+.- .|....|+ + .-...+..+.+.+|.+.-+=-||..|+.|.+.++...-.+.
T Consensus 109 ~~k~~~~~~~~~~~~~~gvririiGdlslL~~~l~k~i~~ieE~Tknn~~~~L~vcf~Ytsr~EI~~a~r~~~~~~~~g~ 188 (271)
T KOG1602|consen 109 LEKIERLLEQGEKLDKYGVRIRVIGDLSLLPESLRKAIKKIEEATKNNTRLILNVCFAYTSRDEILHAVRGIVKRVKDGD 188 (271)
T ss_pred HHHHHHHHHHhhhhhhcCeEEEEEcchhhCCHHHHHHHHHHHHHhhcCCceEEEEEeccCcHHHHHHHHHHHHHhhhcCC
Confidence 1110 01122222 1 11122667788999999999999999999999998876433
No 25
>COG0218 Predicted GTPase [General function prediction only]
Probab=70.55 E-value=36 Score=29.82 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=58.3
Q ss_pred ccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhhch-hHHHhhcccCCcccccccccccccCCceE
Q 028893 64 IDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSK-ESILGKLNNATLFEEAGESNLLLDHKHIT 142 (202)
Q Consensus 64 ~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~-e~l~~~~~n~~~~~~aN~k~~~~~~~~Mt 142 (202)
...|+-+.+++|++-+....|. +++.|+...|+++..+.----=+|+++ .+..+.+++.-..+ .+.+..
T Consensus 104 R~~L~~vvlliD~r~~~~~~D~-em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~---------~~~~~~ 173 (200)
T COG0218 104 RANLKGVVLLIDARHPPKDLDR-EMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKP---------PPDDQW 173 (200)
T ss_pred chhheEEEEEEECCCCCcHHHH-HHHHHHHHcCCCeEEEEEccccCChhHHHHHHHHHHHHhcCC---------CCccce
Confidence 3458999999999998777776 999999999999999986333333322 22233332111111 111112
Q ss_pred EEeecCCCCHHHHHHHHHHHHHHHh
Q 028893 143 LEFASFPDGKEAVAKAANLLFMKYV 167 (202)
Q Consensus 143 lE~LS~sDGKEaIaKAAnlLc~~~~ 167 (202)
+.++|.+-++. |.++-+.|++.+.
T Consensus 174 ~~~~ss~~k~G-i~~l~~~i~~~~~ 197 (200)
T COG0218 174 VVLFSSLKKKG-IDELKAKILEWLK 197 (200)
T ss_pred EEEEecccccC-HHHHHHHHHHHhh
Confidence 66666665554 8887777776543
No 26
>PF13669 Glyoxalase_4: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; PDB: 3RMU_B 3ISQ_A 1JC5_D 1JC4_D 3HDP_A 2QH0_A 3GM5_A 3OA4_A 3CT8_A.
Probab=47.93 E-value=74 Score=23.23 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=30.4
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHHhccC
Q 028893 140 HITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKA 196 (202)
Q Consensus 140 ~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG~~ 196 (202)
.+.||++++-++.+.+++ .+....-..|.-+|++++++..-..
T Consensus 47 ~~~iELi~p~~~~~~~~~--------------~~~gi~Hia~~v~D~d~~~~~l~~~ 89 (109)
T PF13669_consen 47 PVQIELIQPLDGDSPLDR--------------GGGGIHHIAFEVDDLDAAIARLEAQ 89 (109)
T ss_dssp TEEEEEEEESSTTCHHHH--------------TSSEEEEEEEEESHHHHHHHHHHHT
T ss_pred cEEEEEEEeCCCCccccc--------------CCCCEEEEEEEeCCHHHHHHHHHHC
Confidence 389999999998854444 3444556667778999888765433
No 27
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=46.95 E-value=91 Score=24.04 Aligned_cols=49 Identities=12% Similarity=0.114 Sum_probs=33.6
Q ss_pred hhhhhhhccccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhh
Q 028893 55 ILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKK 111 (202)
Q Consensus 55 ~l~ky~~l~~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKk 111 (202)
+.+.++.+.-+.++.++|-+|+. .++-.|....|+++.-+.|.+|-+-+
T Consensus 53 l~~~~~~~~~~~v~vi~Is~d~~--------~~~~~~~~~~~~~~~~l~D~~~~~~~ 101 (154)
T PRK09437 53 LRDNMDELKKAGVVVLGISTDKP--------EKLSRFAEKELLNFTLLSDEDHQVAE 101 (154)
T ss_pred HHHHHHHHHHCCCEEEEEcCCCH--------HHHHHHHHHhCCCCeEEECCCchHHH
Confidence 34555566556688888876542 33445889999999999997765443
No 28
>KOG3415 consensus Putative Rab5-interacting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.70 E-value=64 Score=26.67 Aligned_cols=48 Identities=33% Similarity=0.366 Sum_probs=33.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhh
Q 028893 5 DTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK 60 (202)
Q Consensus 5 ~~~~~~~~~~~~i~~L~l~~lW~~lHlivs~~~~~~~~~~~~e~y~is~g~l~ky~ 60 (202)
|..--+..|+-|++-|+++++|-.+-|.=-++-. ... .||+|.+--|-
T Consensus 39 dellDViyW~rQVi~l~lGviwGi~pL~G~l~iv-----~f~---~issgIvy~y~ 86 (129)
T KOG3415|consen 39 DELLDVIYWIRQVIGLILGVIWGIIPLVGFLGIV-----LFL---GISSGIVYLYY 86 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchhhhHHHHH-----HHH---HhhhhHHHHHH
Confidence 3344478899999999999999988775443322 223 56777665554
No 29
>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin. The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....
Probab=46.41 E-value=6.5 Score=27.27 Aligned_cols=43 Identities=23% Similarity=0.210 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCcccc-chhcchHhHHHHH
Q 028893 148 FPDGKEAVAKAANLLFMKYVKLGGSGKIQE-EKIFTEAHMSEAL 190 (202)
Q Consensus 148 ~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~-~~~fTEadm~eAL 190 (202)
..|..+.|++|+..+.+...+......+.+ ...++..|+..|+
T Consensus 22 s~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~Av 65 (65)
T PF00808_consen 22 SKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKAV 65 (65)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHC
Confidence 568899999999999888776654222222 4468999998886
No 30
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=43.94 E-value=62 Score=25.61 Aligned_cols=54 Identities=17% Similarity=0.068 Sum_probs=38.4
Q ss_pred hhhhhhccccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchh
Q 028893 56 LKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGIL 109 (202)
Q Consensus 56 l~ky~~l~~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvL 109 (202)
.+-++.++-++++.++|=+|+.+.+..++..++..|....|+++..++|.+|-+
T Consensus 48 ~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 48 NRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred HHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 344444444578888888877544444556677778889999999999988743
No 31
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=39.67 E-value=2.7e+02 Score=24.56 Aligned_cols=52 Identities=6% Similarity=0.011 Sum_probs=29.1
Q ss_pred eEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhhchhHHHhhcc
Q 028893 69 YLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN 121 (202)
Q Consensus 69 ~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~ 121 (202)
...+|||..+-- ...-.+++..+...|+|.+.+-.---......+..+++++
T Consensus 90 ~ailVVDa~~g~-~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~ 141 (270)
T cd01886 90 GAVAVFDAVAGV-EPQTETVWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIR 141 (270)
T ss_pred EEEEEEECCCCC-CHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHH
Confidence 456677774432 2223456666778899988776433333334445555554
No 32
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=36.99 E-value=82 Score=22.80 Aligned_cols=47 Identities=26% Similarity=0.412 Sum_probs=32.9
Q ss_pred hhhccccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhhch
Q 028893 59 YKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSK 113 (202)
Q Consensus 59 y~~l~~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~ 113 (202)
|+.+.....+.++|-.|+.+ +.-.|....++++-.++|.++-+.+..
T Consensus 52 ~~~~~~~~~~vi~is~d~~~--------~~~~~~~~~~~~~~~~~D~~~~~~~~~ 98 (124)
T PF00578_consen 52 YKKYKDKGVQVIGISTDDPE--------EIKQFLEEYGLPFPVLSDPDGELAKAF 98 (124)
T ss_dssp HHHHHTTTEEEEEEESSSHH--------HHHHHHHHHTCSSEEEEETTSHHHHHT
T ss_pred hhhhccceEEeeeccccccc--------chhhhhhhhccccccccCcchHHHHHc
Confidence 33443446677777776644 455588899999999999887766543
No 33
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=35.81 E-value=37 Score=28.05 Aligned_cols=51 Identities=29% Similarity=0.346 Sum_probs=40.5
Q ss_pred hccccCc--ceEEEEEecccccChHHHHHHHHHHH-HhccceeEEecccchhhhch
Q 028893 61 ALDIDKL--RYLAIVIESEEAYHIPAVIQLLQWLV-DIGVKHVCLYDAEGILKKSK 113 (202)
Q Consensus 61 ~l~~~kl--~~LaiVvdseea~~~~kv~~Ll~Wl~-~iGVk~v~lYD~~GvLKks~ 113 (202)
.++.+++ +|+||+-.+..-||.. ++.|+..+. .-|. .+.++|..|=.....
T Consensus 15 ~l~~~~l~~~H~~I~G~TGsGKS~~-~~~ll~~l~~~~~~-~~ii~D~~GEY~~~~ 68 (229)
T PF01935_consen 15 YLDLNKLFNRHIAIFGTTGSGKSNT-VKVLLEELLKKKGA-KVIIFDPHGEYASLF 68 (229)
T ss_pred EeeHHHhccceEEEECCCCCCHHHH-HHHHHHHHHhcCCC-CEEEEcCCCcchhhh
Confidence 4566676 7999999998888765 678888888 7777 788999999665555
No 34
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=35.01 E-value=33 Score=22.75 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.0
Q ss_pred chHhHHHHHHHhccCC
Q 028893 182 TEAHMSEALRAVAKAR 197 (202)
Q Consensus 182 TEadm~eALkaVG~~~ 197 (202)
||.+|.+|+.+|=.|+
T Consensus 1 tee~l~~Ai~~v~~g~ 16 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK 16 (45)
T ss_dssp -HHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHhCC
Confidence 7899999999998764
No 35
>cd08348 BphC2-C3-RGP6_C_like The single-domain 2,3-dihydroxybiphenyl 1,2-dioxygenases (BphC, EC 1.13.11.39) from Rhodococcus globerulus P6, BphC2-RGP6 and BphC3-RGP6, and similar proteins. This subfamily contains Rhodococcus globerulus P6 BphC2-RGP6 and BphC3-RGP6, and similar proteins. BphC catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, yielding 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoic acid. This is the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). This subfamily of BphCs belongs to the type I extradiol dioxygenase family, which require a metal in the active site in its catalytic mechanism. Most type I extradiol dioxygenases are activated by Fe(II). Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. For example, three types of BphC enzymes have been found in Rhodococcus globerulus (BphC1-RGP6 - BphC3-RGP6), all three enzymes are type I extradiol dioxygenases. BphC2-RGP6 and BphC3-RGP6 are
Probab=34.16 E-value=1.4e+02 Score=21.88 Aligned_cols=65 Identities=23% Similarity=0.103 Sum_probs=40.3
Q ss_pred cceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhhchhHHHhhcccCCcccccccccccccCCceEEEee
Q 028893 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFA 146 (202)
Q Consensus 67 l~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~n~~~~~~aN~k~~~~~~~~MtlE~L 146 (202)
+.|+++.|++ .+++.++...+...|++.+--.+ .+. .....-.|+.+-.+|+.
T Consensus 66 ~~h~~f~v~~-----~~~v~~~~~~l~~~G~~~~~~~~-------------------~~~---~~~~~~~DP~G~~ie~~ 118 (134)
T cd08348 66 LNHIAFEVDS-----LDDLRDLYERLRAAGITPVWPVD-------------------HGN---AWSIYFRDPDGNRLELF 118 (134)
T ss_pred ceEEEEEeCC-----HHHHHHHHHHHHHCCCCccccCC-------------------CCc---eeEEEEECCCCCEEEEE
Confidence 3456665554 55566677777777776321000 000 01123567888899999
Q ss_pred cCCCCHHHHHHH
Q 028893 147 SFPDGKEAVAKA 158 (202)
Q Consensus 147 S~sDGKEaIaKA 158 (202)
+.-+..++||.|
T Consensus 119 ~~~~~~~~~~~~ 130 (134)
T cd08348 119 VDTPWYVAQAAA 130 (134)
T ss_pred EcCCCChhhHHh
Confidence 999999999866
No 36
>PF14848 HU-DNA_bdg: DNA-binding domain
Probab=33.58 E-value=81 Score=24.82 Aligned_cols=88 Identities=19% Similarity=0.183 Sum_probs=62.2
Q ss_pred cCcceEEEEEecccccChHHHHHHHH-HHHHhccceeEEecccchhhhchhHHHhhcccCCcccc------------cc-
Q 028893 65 DKLRYLAIVIESEEAYHIPAVIQLLQ-WLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEE------------AG- 130 (202)
Q Consensus 65 ~kl~~LaiVvdseea~~~~kv~~Ll~-Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~n~~~~~~------------aN- 130 (202)
++-+|.|.++..... ...+|++.++ .-+. +.=-|+.++|.-..+.+.+.+.+..+++. .+
T Consensus 15 ~~~~y~a~~~~~~~~-tl~~Ia~~i~~~~s~-----~t~~di~~vl~~~~~~~~~~l~~G~sV~~glg~~slsv~G~~~~ 88 (124)
T PF14848_consen 15 AKDDYYAQVVSSGTL-TLEDIAEEIAKEGST-----LTRADIEAVLNALKDEMIEALMNGYSVNLGLGYFSLSVKGVFEG 88 (124)
T ss_pred CCCceEEEEEecCcc-CHHHHHHHHHHhCCC-----CCHHHHHHHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEEecccC
Confidence 445699999888666 8999988765 5222 23349999999999999999987764332 11
Q ss_pred -cccccccCCceEEEeecCCCCHHHHHHH
Q 028893 131 -ESNLLLDHKHITLEFASFPDGKEAVAKA 158 (202)
Q Consensus 131 -~k~~~~~~~~MtlE~LS~sDGKEaIaKA 158 (202)
.+.....-+..+|.|=-+.+=||++.+.
T Consensus 89 ~~~~f~~~~~~~~v~f~pg~~lk~al~~~ 117 (124)
T PF14848_consen 89 ENESFDPNIHKITVNFTPGKELKEALKNT 117 (124)
T ss_pred cccccccccceeEEEeeeCHHHHHHHHhC
Confidence 2233344556888888888888888753
No 37
>cd08362 BphC5-RrK37_N_like N-terminal, non-catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Rhodococcus rhodochrous K37, and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the N-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dioxyge
Probab=30.98 E-value=1.3e+02 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.138 Sum_probs=18.8
Q ss_pred cceEEEEEecccccChHHHHHHHHHHHHhcccee
Q 028893 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV 100 (202)
Q Consensus 67 l~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v 100 (202)
+.|+++.+++ .+++.++...+...|++.+
T Consensus 59 ~~~~~~~v~~-----~~~l~~~~~~l~~~G~~~~ 87 (120)
T cd08362 59 LDVVSFSVAS-----RADVDALARQVAARGGTVL 87 (120)
T ss_pred CceEEEEeCC-----HHHHHHHHHHHHHcCCcee
Confidence 3466666643 4567777777777787643
No 38
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=30.88 E-value=1.2e+02 Score=25.11 Aligned_cols=41 Identities=20% Similarity=0.395 Sum_probs=32.6
Q ss_pred ceEEEEEecccccChHHHHHHHHHHHHhcccee---EEecccch
Q 028893 68 RYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV---CLYDAEGI 108 (202)
Q Consensus 68 ~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v---~lYD~~Gv 108 (202)
+.+|||.-.+-+.+-.++.+...||..+|++.+ |.++-+|+
T Consensus 91 pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi 134 (143)
T PF10662_consen 91 PVIGVITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGI 134 (143)
T ss_pred CEEEEEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCH
Confidence 588999888666678899999999999999864 44555554
No 39
>cd07239 BphC5-RK37_C_like C-terminal, catalytic, domain of BphC5 (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacterium Rhodococcus rhodochrous K37 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, the third step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). The enzyme contains a N-terminal and a C-terminal domain of similar structure fold, resulting from an ancient gene duplication. BphC belongs to the type I extradiol dioxygenase family, which requires a metal in the active site for its catalytic activity. Polychlorinated biphenyl degrading bacteria demonstrate multiplicity of BphCs. Bacterium Rhodococcus rhodochrous K37 has eight genes encoding BphC enzymes. This family includes the C-terminal domain of BphC5-RrK37. The crystal structure of the protein from Novosphingobium aromaticivorans has a Mn(II)in the active site, although most proteins of type I extradiol dio
Probab=29.68 E-value=1.1e+02 Score=23.80 Aligned_cols=31 Identities=23% Similarity=0.365 Sum_probs=22.8
Q ss_pred cCcceEEEEEecccccChHHHHHHHHHHHHhcccee
Q 028893 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV 100 (202)
Q Consensus 65 ~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v 100 (202)
.++.|+++.|++ .+++.++..-+...|++..
T Consensus 58 ~~~~hiaf~v~d-----~~~l~~~~~~l~~~Gi~~~ 88 (144)
T cd07239 58 PSLNHVAFEMPS-----IDEVMRGIGRMIDKGIDIL 88 (144)
T ss_pred CceEEEEEECCC-----HHHHHHHHHHHHHcCCcee
Confidence 456688888865 5567777778889998764
No 40
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=28.64 E-value=3.7e+02 Score=22.95 Aligned_cols=53 Identities=9% Similarity=0.172 Sum_probs=31.0
Q ss_pred eEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhhchhHHHhhccc
Q 028893 69 YLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNN 122 (202)
Q Consensus 69 ~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~n 122 (202)
.+.+|++..+- ......+++.++...|+|.+.+...--......+...+++++
T Consensus 90 ~~i~Vvd~~~g-~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~~~~~~l~~ 142 (268)
T cd04170 90 AALVVVSAQSG-VEVGTEKLWEFADEAGIPRIIFINKMDRERADFDKTLAALQE 142 (268)
T ss_pred EEEEEEeCCCC-CCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHHHHHHHHHH
Confidence 45667776443 223345666778889999888765322223344555555543
No 41
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=28.46 E-value=77 Score=26.56 Aligned_cols=44 Identities=18% Similarity=0.302 Sum_probs=36.9
Q ss_pred cChHHHHHHHHHHHHhccceeEEecccchhhhch-hHHHhhcccC
Q 028893 80 YHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSK-ESILGKLNNA 123 (202)
Q Consensus 80 ~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~-e~l~~~~~n~ 123 (202)
++...+.+++.-+...|+..+++-|..|++.... +.+++.+++.
T Consensus 143 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~ 187 (265)
T cd03174 143 TDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREA 187 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999986554 6667776543
No 42
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=27.86 E-value=1.2e+02 Score=27.93 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=34.9
Q ss_pred cCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEe
Q 028893 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLY 103 (202)
Q Consensus 65 ~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lY 103 (202)
.+...+|||+|.+......++.+.+.++..-|+..-.+|
T Consensus 49 ~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~~~~~~ilF 87 (284)
T PF03668_consen 49 SKIEKVAIVIDIRSREFFEDLFEALDELRKKGIDVRILF 87 (284)
T ss_pred CCCceEEEEEeCCChHHHHHHHHHHHHHHhcCCceEEEE
Confidence 456789999999998888999999999999999998887
No 43
>cd07255 Glo_EDI_BRP_like_12 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=27.00 E-value=1.3e+02 Score=21.56 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=19.5
Q ss_pred CcceEEEEEecccccChHHHHHHHHHHHHhccce
Q 028893 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKH 99 (202)
Q Consensus 66 kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~ 99 (202)
.+.|+++.+++ .+++.++...+...|++.
T Consensus 64 ~~~hi~f~v~~-----~~~v~~~~~~l~~~g~~~ 92 (125)
T cd07255 64 GLYHFAILLPS-----RADLAAALRRLIELGIPL 92 (125)
T ss_pred cEEEEEEECCC-----HHHHHHHHHHHHHcCCce
Confidence 34577766665 446777777888888853
No 44
>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex. TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.
Probab=26.89 E-value=1.2e+02 Score=22.17 Aligned_cols=11 Identities=36% Similarity=0.582 Sum_probs=8.7
Q ss_pred cchHhHHHHHH
Q 028893 181 FTEAHMSEALR 191 (202)
Q Consensus 181 fTEadm~eALk 191 (202)
+|-.|+|.|||
T Consensus 56 Lt~~Di~~ALr 66 (66)
T PF02969_consen 56 LTTDDINSALR 66 (66)
T ss_dssp B-HHHHHHHH-
T ss_pred CCHHHHHHHhC
Confidence 99999999997
No 45
>PRK07328 histidinol-phosphatase; Provisional
Probab=26.84 E-value=98 Score=26.86 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=28.0
Q ss_pred EEEecccccChHHHHH----HHHHHHHhccceeEEeccc
Q 028893 72 IVIESEEAYHIPAVIQ----LLQWLVDIGVKHVCLYDAE 106 (202)
Q Consensus 72 iVvdseea~~~~kv~~----Ll~Wl~~iGVk~v~lYD~~ 106 (202)
|++.| |||..++|.. .+-.+..+|+++++.|.-.
T Consensus 224 itigS-DAH~~~~vg~~~~~a~~~l~~~G~~~~~~f~~~ 261 (269)
T PRK07328 224 VVLGS-DAHRPEEVGFGFAEALALLKEVGYTETVVFRAR 261 (269)
T ss_pred EEEeC-CCCCHHHHhccHHHHHHHHHHcCCcEEEEEcCC
Confidence 56666 9999998874 7788889999999999844
No 46
>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]
Probab=26.41 E-value=11 Score=35.46 Aligned_cols=38 Identities=37% Similarity=0.461 Sum_probs=35.2
Q ss_pred ccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEE
Q 028893 64 IDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCL 102 (202)
Q Consensus 64 ~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~l 102 (202)
+.++|-||.|++- .|++++|+-.|--.+..||.||+.|
T Consensus 51 ~sqpr~la~~ila-aakNIdDLssL~~~l~qig~KHral 88 (385)
T KOG3378|consen 51 SSQPRKLALVILA-AAKNIDDLSSLEEYLAQIGRKHRAL 88 (385)
T ss_pred cCChhHHHHHHHH-HhcChhhHHHHHHHHHHHhhhhhhe
Confidence 6678999999998 8899999999999999999999987
No 47
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=24.34 E-value=33 Score=29.11 Aligned_cols=48 Identities=21% Similarity=0.228 Sum_probs=30.9
Q ss_pred EEecccchhhhchhHHHhhcccCCcccccccccccccCCceEEEeecCCCCHHHHHHH
Q 028893 101 CLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKA 158 (202)
Q Consensus 101 ~lYD~~GvLKks~e~l~~~~~n~~~~~~aN~k~~~~~~~~MtlE~LS~sDGKEaIaKA 158 (202)
.++|++|+|-...+. ++++.+.-......+..+.|+|..-||..-.-+
T Consensus 1 ~lfD~DGvL~~~~~~----------~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~ 48 (236)
T TIGR01460 1 FLFDIDGVLWLGHKP----------IPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYA 48 (236)
T ss_pred CEEeCcCccCcCCcc----------CcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 378999999877543 444444344445566888899877776544433
No 48
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=23.55 E-value=32 Score=29.77 Aligned_cols=36 Identities=8% Similarity=0.137 Sum_probs=1.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028893 11 YSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAI 46 (202)
Q Consensus 11 ~~~~~~i~~L~l~~lW~~lHlivs~~~~~~~~~~~~ 46 (202)
.+....|+.++...=||+|..+|.++++++++...+
T Consensus 23 ~~l~~tv~~~L~~yGWyil~~~I~ly~l~qkl~~~~ 58 (190)
T PF06936_consen 23 SFLQSTVGSFLSSYGWYILFGCILLYLLWQKLSPSF 58 (190)
T ss_dssp ---------------------------------HHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 334455788999999999999999999999776665
No 49
>cd09013 BphC-JF8_N_like N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8 and similar proteins. 2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C
Probab=22.87 E-value=1.9e+02 Score=20.94 Aligned_cols=29 Identities=21% Similarity=0.043 Sum_probs=21.0
Q ss_pred CcceEEEEEecccccChHHHHHHHHHHHHhccce
Q 028893 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKH 99 (202)
Q Consensus 66 kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~ 99 (202)
.+.|++..+++ .++|.+....+...|++.
T Consensus 62 ~~~h~af~v~~-----~~~v~~~~~~l~~~G~~~ 90 (121)
T cd09013 62 GLGHIAWRASS-----PEALERRVAALEASGLGI 90 (121)
T ss_pred ceEEEEEEcCC-----HHHHHHHHHHHHHcCCcc
Confidence 34577776665 457788888888888873
No 50
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=22.67 E-value=1.2e+02 Score=21.64 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=24.3
Q ss_pred ccCcceEEEEEecccccChHHHHHHHHHHHHhc
Q 028893 64 IDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIG 96 (202)
Q Consensus 64 ~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iG 96 (202)
+.+---..+|.|..+..+...+.+++.|+..+.
T Consensus 71 ~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~ 103 (119)
T PF08477_consen 71 LKKADAVILVYDLSDPESLEYLSQLLKWLKNIR 103 (119)
T ss_dssp HHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHH
Confidence 344445677788877778888888888887765
No 51
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=22.32 E-value=91 Score=25.43 Aligned_cols=85 Identities=18% Similarity=0.238 Sum_probs=54.7
Q ss_pred CcceEEEEEecccccChHHHHHHHHHHHHhcccee-EEecccchhhhchhHHHhhcccCCcccccccccccccCCceEEE
Q 028893 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV-CLYDAEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLE 144 (202)
Q Consensus 66 kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v-~lYD~~GvLKks~e~l~~~~~n~~~~~~aN~k~~~~~~~~MtlE 144 (202)
..+.++|-++. + ..+ ...|+...|++|- .++|.+|.+-+.. +-.+.| -...+++++..+.
T Consensus 97 ~~~vi~v~~~~-~---~~~---~~~~~~~~~~~~~~~~~D~~~~~~~~~--------gv~~~P----~t~vid~~G~i~~ 157 (185)
T PRK15412 97 GIRVVGMNYKD-D---RQK---AISWLKELGNPYALSLFDGDGMLGLDL--------GVYGAP----ETFLIDGNGIIRY 157 (185)
T ss_pred CCEEEEEECCC-C---HHH---HHHHHHHcCCCCceEEEcCCccHHHhc--------CCCcCC----eEEEECCCceEEE
Confidence 46667765443 2 223 3348889999986 5889887643211 111222 2456676777778
Q ss_pred eecCCCCHHHHHHHHHHHHHHHhhc
Q 028893 145 FASFPDGKEAVAKAANLLFMKYVKL 169 (202)
Q Consensus 145 ~LS~sDGKEaIaKAAnlLc~~~~k~ 169 (202)
..++...++.+.+..+.+..+..+.
T Consensus 158 ~~~G~~~~~~l~~~i~~~~~~~~~~ 182 (185)
T PRK15412 158 RHAGDLNPRVWESEIKPLWEKYSKE 182 (185)
T ss_pred EEecCCCHHHHHHHHHHHHHHHHhh
Confidence 8888889999888888887776543
No 52
>PF14647 FAM91_N: FAM91 N-terminus
Probab=22.08 E-value=71 Score=29.92 Aligned_cols=33 Identities=27% Similarity=0.227 Sum_probs=27.4
Q ss_pred HHHHHHhhcCCCCccccchhcchHhHHHHHHHhccCCC
Q 028893 161 LLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKARN 198 (202)
Q Consensus 161 lLc~~~~k~~~~~~~~~~~~fTEadm~eALkaVG~~~~ 198 (202)
.|..+.++..++=|. .+-||+|| +||-+|-|+|
T Consensus 94 ~ml~~lm~~ekSYDs--LPNFTAaD---~LRllGIGRN 126 (308)
T PF14647_consen 94 DMLAELMKSEKSYDS--LPNFTAAD---CLRLLGIGRN 126 (308)
T ss_pred HHHHHHHHcCCCccc--CCCCcHHH---HHHHhcchHH
Confidence 466788899998877 67799997 7899998886
No 53
>cd08351 ChaP_like ChaP, an enzyme involved in the biosynthesis of the antitumor agent chartreusin (cha); and similar proteins. ChaP is an enzyme involved in the biosynthesis of the potent antitumor agent chartreusin (cha). Cha is an aromatic polyketide glycoside produced by Streptomyces chartreusis. ChaP may play a role as a meta-cleavage dioxygenase in the oxidative rearrangement of the anthracyclic polyketide. ChaP belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.
Probab=21.89 E-value=2e+02 Score=20.95 Aligned_cols=28 Identities=7% Similarity=0.175 Sum_probs=19.5
Q ss_pred CcceEEEEEecccccChHHHHHHHHHHHHhccce
Q 028893 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKH 99 (202)
Q Consensus 66 kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~ 99 (202)
...|+|+.++. .+|.++..++...|++.
T Consensus 58 ~~~h~a~~v~~------~dl~~~~~~l~~~G~~~ 85 (123)
T cd08351 58 PPQHYAFLVSE------EEFDRIFARIRERGIDY 85 (123)
T ss_pred CcceEEEEeCH------HHHHHHHHHHHHcCCce
Confidence 34577776643 35777788888888875
No 54
>cd09012 Glo_EDI_BRP_like_24 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=21.42 E-value=1.4e+02 Score=21.65 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=17.4
Q ss_pred eEEEEEecccccChHHHHHHHHHHHHhcccee
Q 028893 69 YLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV 100 (202)
Q Consensus 69 ~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v 100 (202)
|+++.+++ .++|.++...+.+.|++.+
T Consensus 71 ~l~f~v~~-----~~~vd~~~~~l~~~G~~i~ 97 (124)
T cd09012 71 LISLSADS-----REEVDELVEKALAAGGKEF 97 (124)
T ss_pred EEEEeCCC-----HHHHHHHHHHHHHCCCccc
Confidence 56655554 3467777777777777653
No 55
>cd07265 2_3_CTD_N N-terminal domain of catechol 2,3-dioxygenase. This subfamily contains the N-terminal, non-catalytic, domain of catechol 2,3-dioxygenase. Catechol 2,3-dioxygenase (2,3-CTD, catechol:oxygen 2,3-oxidoreductase) catalyzes an extradiol cleavage of catechol to form 2-hydroxymuconate semialdehyde with the insertion of two atoms of oxygen. The enzyme is a homotetramer and contains catalytically essential Fe(II) . The reaction proceeds by an ordered bi-unit mechanism. First, catechol binds to the enzyme, this is then followed by the binding of dioxygen to form a tertiary complex, and then the aromatic ring is cleaved to produce 2-hydroxymuconate semialdehyde. Catechol 2,3-dioxygenase belongs to the type I extradiol dioxygenase family. The subunit comprises the N- and C-terminal domains of similar structure fold, resulting from an ancient gene duplication. The active site is located in a funnel-shaped space of the C-terminal domain. This subfamily represents the N-terminal do
Probab=20.72 E-value=2.3e+02 Score=20.35 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=21.4
Q ss_pred CcceEEEEEecccccChHHHHHHHHHHHHhcccee
Q 028893 66 KLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV 100 (202)
Q Consensus 66 kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v 100 (202)
.+.|++..+++ .+++.++...+...|++..
T Consensus 61 ~~~hiaf~v~~-----~~dv~~~~~~l~~~G~~~~ 90 (122)
T cd07265 61 GLDFMGFKVLD-----DADLEKLEARLQAYGVAVE 90 (122)
T ss_pred CeeEEEEEeCC-----HHHHHHHHHHHHHCCCcEE
Confidence 34577776655 5567778888888888754
No 56
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.55 E-value=87 Score=32.75 Aligned_cols=97 Identities=19% Similarity=0.185 Sum_probs=62.7
Q ss_pred hccccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhhchhHHHhhcc--cC-Cccccccccccccc
Q 028893 61 ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLN--NA-TLFEEAGESNLLLD 137 (202)
Q Consensus 61 ~l~~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~--n~-~~~~~aN~k~~~~~ 137 (202)
+.+-+|+.+|++-|+++-+ + .+-+=+|-=|+-.|++|+.+.--+.+++ +. ++.++.-+=+++..
T Consensus 31 k~~kkkp~~LclsVtte~P--v-----------~v~~l~v~K~skgg~ykrk~~~~Lrel~~Vdgin~~~e~~eF~L~fe 97 (867)
T KOG2148|consen 31 KSQKKKPCVLCLSVTTEGP--V-----------KVATLRVMKYSKGGVYKRKKMWNLRELSKVDGINPDKEGPEFDLGFE 97 (867)
T ss_pred cccccCceEEEEEeeccCC--c-----------eeEEEEEEeecCCCccchhhhhchhhhhhhcccCCCCCCCceEeehH
Confidence 3467899999998888665 1 1122355668999999999888777764 22 22222212222221
Q ss_pred CCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCC
Q 028893 138 HKHITLEFASFPDGKEAVAKAANLLFMKYVKLGG 171 (202)
Q Consensus 138 ~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~ 171 (202)
.-. ..=..+..|-|..--.+.+.+|++|+..++
T Consensus 98 kl~-k~w~a~nt~ern~fl~~i~kl~q~~l~~q~ 130 (867)
T KOG2148|consen 98 KLY-KQWTARNTDERNRFLVCILKLCQDYLRRQG 130 (867)
T ss_pred hHH-HHHHhCCHHHHhHHHHHHHHHHHHHhcccC
Confidence 111 112356788999999999999999999654
No 57
>cd08360 MhqB_like_C C-terminal domain of Burkholderia sp. NF100 MhqB and similar proteins; MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. This subfamily contains the C-terminal, catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.39 E-value=2.3e+02 Score=21.22 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=19.6
Q ss_pred cCcceEEEEEecccccChHHHHHHHHHHHHhccce
Q 028893 65 DKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKH 99 (202)
Q Consensus 65 ~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~ 99 (202)
..+.|+|+.|++ .+++.++-.-+...|++.
T Consensus 61 ~g~~hiaf~v~d-----~~~~~~~~~~l~~~G~~~ 90 (134)
T cd08360 61 AGFHHAAFEVGD-----IDEVMLGGNHMLRAGYQT 90 (134)
T ss_pred CcceEEEEEeCC-----HHHHHHHHHHHHHcCCcc
Confidence 456688887765 445666666677777763
No 58
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=20.02 E-value=5.3e+02 Score=21.60 Aligned_cols=54 Identities=15% Similarity=0.125 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhc
Q 028893 8 QKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKAL 62 (202)
Q Consensus 8 ~~~~~~~~~i~~L~l~~lW~~lHlivs~~~~~~~~~~~~e~y~is~g~l~ky~~l 62 (202)
...|..+..|.-+.+.++|-++=.++|+...|-.+ -.+-++.|....+++-++.
T Consensus 68 ~~~Yr~Ls~ilaiP~A~~~Gi~FA~lsf~hIW~v~-P~ik~~~i~~~~~~~vw~~ 121 (148)
T PF01146_consen 68 YWCYRILSLILAIPLAFLWGILFACLSFLHIWCVM-PCIKLCLIPLPCVQRVWSS 121 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 44677788888899999999999999999998643 4455778888888887764
Done!