RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= 028893
         (202 letters)



>gnl|CDD|181976 PRK09592, celD, cellobiose phosphotransferase system IIC component;
           Reviewed.
          Length = 449

 Score = 28.5 bits (64), Expect = 2.3
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 3/31 (9%)

Query: 20  LGLWIIWLLIHFAVDLWYFALHIACAIESYL 50
           +GL II+ LIH    LW   +H A  + S++
Sbjct: 254 IGLMIIYFLIHA---LWIVGIHGANIVSSFV 281


>gnl|CDD|225546 COG3000, ERG3, Sterol desaturase [Lipid metabolism].
          Length = 271

 Score = 28.2 bits (63), Expect = 2.6
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 22  LWIIWLLIHFAVDLWYFALH 41
             +  LL    +DL Y+  H
Sbjct: 95  FALQLLLAFLFLDLGYYWAH 114


>gnl|CDD|211928 TIGR04205, classIII_w_PIP, class III signal peptide protein,
           archaeosortase D/PIP-CTERM system.  Members of this
           protein family are short proteins that consist largely
           of the archaeal class III signal peptide (see
           pfam04021). Members are encoded in a gene cassette
           between archaeosortase D (TIGR04175) and its PIP-CTERM
           target protein (TIGR04173).
          Length = 67

 Score = 26.0 bits (57), Expect = 4.5
 Identities = 14/58 (24%), Positives = 22/58 (37%)

Query: 140 HITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRAVAKAR 197
            I+LEFA       A A      ++K V  G +           A  ++ +R V K +
Sbjct: 4   QISLEFALLLALIVATASIVGFYYLKMVSFGSATAKNISGSTESAMANKTVRRVEKVK 61


>gnl|CDD|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional.
          Length = 468

 Score = 27.0 bits (59), Expect = 7.6
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 70  LAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGIL--KKSKESILG 118
           L I   +   + +   + L++ LV++G   +C+ D  GIL  K +KE + G
Sbjct: 150 LCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSG 200


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.324    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0690    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,438,986
Number of extensions: 993243
Number of successful extensions: 1294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1294
Number of HSP's successfully gapped: 18
Length of query: 202
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 110
Effective length of database: 6,857,034
Effective search space: 754273740
Effective search space used: 754273740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 56 (25.4 bits)