RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 028893
         (202 letters)



>d1mwpa_ d.170.2.1 (A:) N-terminal domain of the amyloid precursor
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 96

 Score = 25.5 bits (56), Expect = 2.4
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 78  EAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKE 114
              ++   +Q  +W  D      C+   EGIL+  +E
Sbjct: 12  GRLNMHMNVQNGKWDSDPSGTKTCIDTKEGILQYCQE 48


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.138    0.417 

Gapped
Lambda     K      H
   0.267   0.0652    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 766,713
Number of extensions: 34350
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 4
Length of query: 202
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,295,466
Effective search space: 156751386
Effective search space used: 156751386
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 51 (23.6 bits)