BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028894
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XRI|A Chain A, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|1XRI|B Chain B, X-ray Structure Of A Putative Phosphoprotein Phosphatase
From Arabidopsis Thaliana Gene At1g05000
pdb|2Q47|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
pdb|2Q47|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
Putative Phosphoprotein Phosphatase From Arabidopsis
Thaliana Gene At1g05000
Length = 151
Score = 220 bits (560), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 101/148 (68%), Positives = 119/148 (80%)
Query: 15 LVPPPNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLF 74
L+PP NFS V+ GI+RS FP S+NF FLQTL LRSIIYLCPEPYPE NL+FL + IRLF
Sbjct: 2 LIPPLNFSXVDNGIFRSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGIRLF 61
Query: 75 HFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCL 134
FGIEG EP V+IP I ALK+L+D +NHPVLIHCKRGKHRTGCLVGCLRKLQ WCL
Sbjct: 62 QFGIEGNKEPFVNIPDHKIRXALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCL 121
Query: 135 SSVFEEYRHFAGLKSRDTDLKFMETFNV 162
+S+F+EY+ FA K+R +D +F E F+V
Sbjct: 122 TSIFDEYQRFAAAKARVSDQRFXEIFDV 149
>pdb|1D5R|A Chain A, Crystal Structure Of The Pten Tumor Suppressor
Length = 324
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 6/126 (4%)
Query: 26 EGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPP 85
EG+YR++ F + N I LC E + + A N R+ + E P
Sbjct: 37 EGVYRNNIDDVVRFLDSKHKNHYKIYNLCAERHYD-----TAKFNCRVAQYPFEDHNPPQ 91
Query: 86 VSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFA 145
+ + K + + L + NH IHCK GK RTG ++ C L E +
Sbjct: 92 LELIKPFCEDLDQWLSEDDNHVAAIHCKAGKGRTGVMI-CAYLLHRGKFLKAQEALDFYG 150
Query: 146 GLKSRD 151
+++RD
Sbjct: 151 EVRTRD 156
>pdb|2P4D|A Chain A, Structure-Assisted Discovery Of Variola Major H1
Phosphatase Inhibitors
Length = 172
Score = 37.0 bits (84), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 18/111 (16%)
Query: 18 PPNFSMVEEGIYRSSFPQSSNFP-----FLQTLNLRSIIYLCPEPYPEENLKFLAAQNIR 72
P + V +Y ++ + N P F LNL Y P NI
Sbjct: 25 PTIXTRVTNNVYLGNYKNAXNAPSSEVKFKYVLNLTXDKYTLPN------------SNIN 72
Query: 73 LFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLV 123
+ H + T +S D + L D RN PVL+HC G +R+G +
Sbjct: 73 IIHIPLVDDTTTDISKYFDDVTAFLS-KCDQRNEPVLVHCVAGVNRSGAXI 122
>pdb|3AWG|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
pdb|3AWG|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp G356a
Mutant (248-576)
Length = 334
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 92 TIMEALKILIDVR-------NHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144
T+++ LK + D + +H + IHCK GK RTG LV L++ + E +F
Sbjct: 94 TLVDLLKFIDDAKVWMTSDPDHVIAIHCKAGKGRTGTLVSSWL-LEDGKFDTAKEALEYF 152
Query: 145 AGLKSRDTDLKFMETF 160
SR TD + + F
Sbjct: 153 G---SRRTDFEVGDVF 165
>pdb|3AWE|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
pdb|3AWE|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (248-576)
Length = 334
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 92 TIMEALKILIDVR-------NHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144
T+++ LK + D + +H + IHCK GK RTG LV L++ + E +F
Sbjct: 94 TLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWL-LEDGKFDTAKEALEYF 152
Query: 145 AGLKSRDTDLKFMETF 160
SR TD + + F
Sbjct: 153 G---SRRTDFEVGDVF 165
>pdb|3AWF|A Chain A, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|B Chain B, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
pdb|3AWF|C Chain C, Crystal Structure Of Pten-Like Domain Of Ci-Vsp (236-576)
Length = 346
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 92 TIMEALKILIDVR-------NHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144
T+++ LK + D + +H + IHCK GK RTG LV L++ + E +F
Sbjct: 106 TLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWL-LEDGKFDTAKEALEYF 164
Query: 145 AGLKSRDTDLKFMETF 160
SR TD + + F
Sbjct: 165 G---SRRTDFEVGDVF 177
>pdb|3V0I|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576, E411f
Length = 324
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 92 TIMEALKILIDVR-------NHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144
T+++ LK + D + +H + IHCK GK RTG LV L++ + E +F
Sbjct: 84 TLVDLLKFIDDAKVWMTSDPDHVIAIHCKGGKGRTGTLVSSWL-LEDGKFDTAKEALEYF 142
Query: 145 AGLKSRDTDLKFMETF-NVMCLRQCLY 170
SR TD + + F V Q Y
Sbjct: 143 G---SRRTDFEVGDVFQGVFTASQIRY 166
>pdb|2Q05|A Chain A, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|B Chain B, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|C Chain C, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
pdb|2Q05|D Chain D, Crystal Structure Of TyrSER PROTEIN PHOSPHATASE FROM
VACCINIA VIRUS Wr
Length = 195
Score = 35.8 bits (81), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 8/106 (7%)
Query: 18 PPNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFG 77
P + V +Y ++ + + P + + + ++ L + Y L NI + H
Sbjct: 46 PTIXTRVTNNVYLGNYKNAXDAPSSE-VKFKYVLNLTXDKYT------LPNSNINIIHIP 98
Query: 78 IEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLV 123
+ T +S D + L D RN PVL+HC G +R+G +
Sbjct: 99 LVDDTTTDISKYFDDVTAFLS-KCDQRNEPVLVHCAAGVNRSGAXI 143
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 35.0 bits (79), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 10/67 (14%)
Query: 62 NLKFLAAQNIRLFHFGIEGKTEPPVSIPKD------TIMEALKILIDVRNHPVLIHCKRG 115
N + ++ IR FHF P V IP D I K NHP+ +HC G
Sbjct: 131 NTRENKSRQIRQFHF----HGWPEVGIPSDGKGMINIIAAVQKQQQQSGNHPITVHCSAG 186
Query: 116 KHRTGCL 122
RTG
Sbjct: 187 AGRTGTF 193
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 35.0 bits (79), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/106 (22%), Positives = 45/106 (42%), Gaps = 6/106 (5%)
Query: 71 IRLFHFGIE---GKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLR 127
+R FHF G PP ++ + + A + I P+++HC G R+G + R
Sbjct: 200 LRHFHFTTWPDFGVPNPPQTLVR--FVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDR 257
Query: 128 KLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVMCLRQCLYSII 173
LQ S + + ++ + E +C+ QCL +++
Sbjct: 258 ILQQINTSDYVDIFGIVYAMRKERVWMVQTEQ-QYICIHQCLLAVL 302
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 13/81 (16%)
Query: 71 IRLFHFGIEGKTEPPVSIPK------DTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVG 124
+R FHF P + IP D I K NHP+ +HC G RTG +
Sbjct: 482 VRQFHF----HGWPEIGIPAEGKGMIDLIAAVQKQQQQTGNHPITVHCSAGAGRTGTFIA 537
Query: 125 ---CLRKLQNWCLSSVFEEYR 142
L +++ L VF+ +
Sbjct: 538 LSNILERVKAEGLLDVFQAVK 558
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 94 MEALKILIDVRNHPVLIHCKRGKHRTGCLV 123
++ +K L V P+++HC G RTG +
Sbjct: 212 LKKVKTLNPVHAGPIVVHCSAGVGRTGTFI 241
>pdb|2RF6|A Chain A, Crystal Structure Of The Vaccinia Virus Dual-Specificity
Phosphatase Vh1
pdb|3CM3|A Chain A, High Resolution Crystal Structure Of The Vaccinia Virus
Dual-Specificity Phosphatase Vh1
Length = 176
Score = 33.5 bits (75), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 14/98 (14%)
Query: 27 GIYRSSFPQ-SSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPP 85
G Y+++ SS F LNL Y P NI + H + T
Sbjct: 42 GNYKNAMDAPSSEVKFKYVLNLTMDKYTLPN------------SNINIIHIPLVDDTTTD 89
Query: 86 VSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLV 123
+S D + L D RN PVL+H G +R+G ++
Sbjct: 90 ISKYFDDVTAFLS-KCDQRNEPVLVHSAAGVNRSGAMI 126
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein
Tyrosine Phosphatase Tcptp1, A Potential Therapeutic
Target For Chagas' Disease
Length = 302
Score = 33.5 bits (75), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 7/53 (13%)
Query: 84 PPVSIPKD-TIMEALKILIDVRNHP----VLIHCKRGKHRTGCLVGCLRKLQN 131
P IP+ T +EAL L +V+N P V++HC G RTG L+G L +
Sbjct: 195 PDHGIPQSATSLEAL--LTNVKNSPTTVPVVVHCSAGIGRTGTLIGAYAALTH 245
>pdb|3V0D|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0D|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s)
pdb|3V0F|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0F|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Ii
pdb|3V0G|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|C Chain C, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0G|D Chain D, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Form Iii
pdb|3V0H|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
pdb|3V0H|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Complexed With D-Myo-
Inositol-1,4,5-Triphosphate
Length = 339
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 92 TIMEALKILIDVR-------NHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144
T+++ LK + D + +H + IH K GK RTG LV L++ + E +F
Sbjct: 99 TLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWL-LEDGKFDTAKEALEYF 157
Query: 145 AGLKSRDTDLKFMETF 160
SR TD + + F
Sbjct: 158 G---SRRTDFEVGDVF 170
>pdb|3V0E|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
256-576(C363s)
Length = 324
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 11/76 (14%)
Query: 92 TIMEALKILIDVR-------NHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144
T+++ LK + D + +H + IH K GK RTG LV L++ + E +F
Sbjct: 84 TLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWL-LEDGKFDTAKEALEYF 142
Query: 145 AGLKSRDTDLKFMETF 160
SR TD + + F
Sbjct: 143 G---SRRTDFEVGDVF 155
>pdb|4ERC|A Chain A, Structure Of Vhz Bound To Metavanadate
pdb|4ERC|B Chain B, Structure Of Vhz Bound To Metavanadate
Length = 150
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 57/135 (42%), Gaps = 15/135 (11%)
Query: 16 VPPPNFSMVEEG-IYRSSFPQ-SSNFPFLQTLNLRSIIYLCPEPYPE-ENLKFLAAQNIR 72
V PPNFS V G + + P+ +++ FL L +R ++ L P ++ L +R
Sbjct: 3 VQPPNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLR 62
Query: 73 LFHFGIEGKTEPPVSIPKDTIMEALKIL--IDVRNHPVLIHCKRGKHRTGCLVGC-LRKL 129
+ F PP D I ++I+ + R V +HC G RTG ++ C L K
Sbjct: 63 IPDFC------PPAP---DQIDRFVQIVDEANARGEAVGVHCALGFGRTGTMLACYLVKE 113
Query: 130 QNWCLSSVFEEYRHF 144
+ E R
Sbjct: 114 RGLAAGDAIAEIRRL 128
>pdb|1OHC|A Chain A, Structure Of The Proline Directed Phosphatase Cdc14
pdb|1OHD|A Chain A, Structure Of Cdc14 In Complex With Tungstate
Length = 348
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 47/108 (43%), Gaps = 10/108 (9%)
Query: 18 PPNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFG 77
P + + +E G ++ S P++ + + N+ +II L Y + + LF
Sbjct: 192 PHSRARLESGYHQHS-PETY-IQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFF-- 247
Query: 78 IEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGC 125
+G T P D I++ + + + +HCK G RTG L+ C
Sbjct: 248 ADGST------PTDAIVKEFLDICENAEGAIAVHCKAGLGRTGTLIAC 289
>pdb|3G5J|A Chain A, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
pdb|3G5J|B Chain B, Crystal Structure Of N-Terminal Domain Of Putative AtpGTP
BINDING Protein From Clostridium Difficile 630
Length = 134
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKL--QNWCLSSVFEEYRHF 144
KD ++A ++ ++ N ++I+C RG R+G +V L L + L ++ YR+F
Sbjct: 76 KDIYLQAAELALNYDN--IVIYCARGGXRSGSIVNLLSSLGVNVYQLEGGYKAYRNF 130
>pdb|2IMG|A Chain A, Crystal Structure Of Dual Specificity Protein Phosphatase
23 From Homo Sapiens In Complex With Ligand Malate Ion
Length = 151
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 16 VPPPNFSMVEEG-IYRSSFPQ-SSNFPFLQTLNLRSIIYLCPEPYPE-ENLKFLAAQNIR 72
V PPNFS V G + + P+ +++ FL L +R ++ L P ++ L +R
Sbjct: 4 VQPPNFSWVLPGRLAGLALPRLPAHYQFLLDLGVRHLVSLTERGPPHSDSCPGLTLHRLR 63
Query: 73 LFHFGIEGKTEPPVSIPKDTIMEALKIL--IDVRNHPVLIHCKRGKHRTGCLVGC-LRKL 129
+ F PP D I ++I+ + R V +HC G RTG + C L K
Sbjct: 64 IPDFC------PPAP---DQIDRFVQIVDEANARGEAVGVHCALGFGRTGTXLACYLVKE 114
Query: 130 QNWCLSSVFEEYRHF 144
+ E R
Sbjct: 115 RGLAAGDAIAEIRRL 129
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 103 VRNHPVLIHCKRGKHRTGCLVGCLRKL 129
V P+L+HC G RTG L+G L
Sbjct: 220 VTTSPILVHCSAGIGRTGTLIGAYAAL 246
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 17/101 (16%)
Query: 107 PVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVMCLR 166
P+++HC G RTGC + L+ + Y H ++S+ N M
Sbjct: 223 PIVVHCSAGVGRTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQR---------NYMVQT 273
Query: 167 QCLYSIIY----QYQGYGSKK--RRLLYREENLQKLPQVSP 201
+ YS I+ + G G+ + R LY +QKL QV P
Sbjct: 274 EDQYSFIHEALLEAVGCGNTEVPARSLY--AYIQKLAQVEP 312
>pdb|3V0J|A Chain A, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
pdb|3V0J|B Chain B, Crystal Structure Of Ciona Intestinalis Voltage
Sensor-Containing Phosphatase (Ci-Vsp), Residues
241-576(C363s), Deletion Of 401-405
Length = 334
Score = 31.2 bits (69), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 92 TIMEALKILIDVR-------NHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144
T+++ LK + D + +H + IH K GK RTG LV L++ + E +F
Sbjct: 99 TLVDLLKFIDDAKVWMTSDPDHVIAIHSKGGKGRTGTLVSSWL-LEDGKFDTAKEALEYF 157
Query: 145 AGLKSRDTDL 154
SR TD+
Sbjct: 158 G---SRRTDV 164
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 17/101 (16%)
Query: 107 PVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVMCLR 166
P+++HC G RTGC + L+ + Y H ++S+ N M
Sbjct: 225 PIVVHCSAGVGRTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQR---------NYMVQT 275
Query: 167 QCLYSIIY----QYQGYGSKK--RRLLYREENLQKLPQVSP 201
+ Y I+ + G G+ + R LY +QKL QV P
Sbjct: 276 EDQYGFIHEALLEAVGCGNTEVPARSLY--TYIQKLAQVEP 314
>pdb|3UHF|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHF|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHO|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|A Chain A, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
pdb|3UHP|B Chain B, Crystal Structure Of Glutamate Racemase From Campylobacter
Jejuni Subsp. Jejuni
Length = 274
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 22/105 (20%)
Query: 11 SDGVLVPPPNFSMVEEGIYRSSFPQSS-NFPFLQTLNLRSIIYLCPE-PYPEENLKFLAA 68
+ G+ VP MVEEGI+ F QS+ + F ++I C P +L
Sbjct: 165 ATGLFVP-----MVEEGIFEGDFLQSAMEYYFKNITTPDALILACTHFPLLGRSLSKYFG 219
Query: 69 QNIRLFHFGIEGKTEPPVSIPKDTIMEALKIL--IDVRNHPVLIH 111
+L H G D I+E LK ID++NH +H
Sbjct: 220 DKTKLIHSG-------------DAIVEFLKERENIDLKNHKAKLH 251
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 30.4 bits (67), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR------------NHPV 108
+N++ + +R FHF S P + + +LI+ R P+
Sbjct: 190 KNIQTSESHPLRQFHF---------TSAPDHGVPDTTDLLINFRYLVRDYMKQSPPESPI 240
Query: 109 LIHCKRGKHRTGCLVGCLR 127
L+HC G RTG + R
Sbjct: 241 LVHCSAGVGRTGTFIAIDR 259
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 30.0 bits (66), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 31/79 (39%), Gaps = 21/79 (26%)
Query: 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR------------NHPV 108
+N++ + +R FHF S P + + +LI+ R P+
Sbjct: 190 KNMQSSESHPLRQFHF---------TSWPDHGVPDTTDLLINFRYLVRDYMKQIPPESPI 240
Query: 109 LIHCKRGKHRTGCLVGCLR 127
L+HC G RTG + R
Sbjct: 241 LVHCSAGVGRTGTFIAIDR 259
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 60 EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDT--IMEALKILIDVRNH-----PVLIHC 112
EE L A + IR FH+ + P +P+ T +++ ++ + D N P ++HC
Sbjct: 172 EEQLD--AHRLIRHFHYTVW----PDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHC 225
Query: 113 KRGKHRTGCLVGCLRKLQ 130
G RTG + R LQ
Sbjct: 226 SAGVGRTGTFIALDRILQ 243
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Receptor Phosphatase Beta
Length = 295
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 60 EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDT--IMEALKILIDVRNH-----PVLIHC 112
EE L A + IR FH+ + P +P+ T +++ ++ + D N P ++HC
Sbjct: 175 EEQLD--AHRLIRHFHYTVW----PDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHC 228
Query: 113 KRGKHRTGCLVGCLRKLQ 130
G RTG + R LQ
Sbjct: 229 SAGVGRTGTFIALDRILQ 246
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 91 DTIMEALKILIDVRNH--------PVLIHCKRGKHRTGCLVG 124
D+ L++++DV PV++HC G RTGC +
Sbjct: 200 DSAQPLLQLMLDVEEDRLASEGRGPVVVHCSAGIGRTGCFIA 241
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Cd45 With A Ptyr Peptide
Length = 610
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVM 163
++ P+LIHC+ G +TG L L++ V + ++ L R L + TF
Sbjct: 538 KSTPLLIHCRDGSQQTGIFCALLNLLESAETEEVVDIFQVVKAL--RKARLGXVSTFEQY 595
Query: 164 CLRQCLYSII 173
Q LY +I
Sbjct: 596 ---QFLYDVI 602
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 69 QNIRLFHFGIEGKTEPPVSIPKDT-----IMEALKILIDVRNHPVLIHCKRGKHRTGCLV 123
+ +RLFHF + P +P + +K L P+++HC G RTGC +
Sbjct: 175 RELRLFHF----TSWPDHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHCSAGAGRTGCFI 230
Query: 124 G 124
Sbjct: 231 A 231
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of
Rptp Lar
Length = 575
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 41/101 (40%), Gaps = 17/101 (16%)
Query: 107 PVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVMCLR 166
P+++HC G RTGC + L+ + Y H ++S+ N M
Sbjct: 211 PMVVHCSAGVGRTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQR---------NYMVQT 261
Query: 167 QCLYSIIYQYQ------GYGSKKRRLLYREENLQKLPQVSP 201
+ Y I++ G+ R LY ++QKL QV P
Sbjct: 262 EDQYVFIHEALLEAATCGHTEVPARNLY--AHIQKLGQVPP 300
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Tyrosine Phosphatase Receptor, Type R
Length = 283
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 91 DTIMEALKILIDVRNH--------PVLIHCKRGKHRTGCLVG 124
D+ L++++DV PV++HC G RTGC +
Sbjct: 187 DSAQPLLQLMLDVEEDRLASQGRGPVVVHCSAGIGRTGCFIA 228
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine
Phosphatase Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid
(Soaking Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 60 EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDT--IMEALKILIDVRNH-----PVLIHC 112
EE L A + IR FH+ + P +P+ T +++ ++ + D N P ++HC
Sbjct: 191 EEQLD--AHRLIRHFHYTVW----PDHGVPETTQSLIQFVRTVRDYINRSPGAGPTVVHC 244
Query: 113 KRGKHRTGCLVGCLRKLQ 130
G RTG + R LQ
Sbjct: 245 SAGVGRTGTFIALDRILQ 262
>pdb|1OHE|A Chain A, Structure Of Cdc14b Phosphatase With A Peptide Ligand
Length = 348
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 10/108 (9%)
Query: 18 PPNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFG 77
P + + +E G ++ S P++ + + N+ +II L Y + + LF
Sbjct: 192 PHSRARLESGYHQHS-PETY-IQYFKNHNVTTIIRLNKRMYDAKRFTDAGFDHHDLFF-- 247
Query: 78 IEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGC 125
+G T P D I++ + + + +H K G RTG L+ C
Sbjct: 248 ADGST------PTDAIVKEFLDICENAEGAIAVHSKAGLGRTGTLIAC 289
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 103 VRNHPVLIHCKRGKHRTGCLV 123
V + PVL+HC G RTG LV
Sbjct: 207 VDSEPVLVHCSAGIGRTGVLV 227
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 107 PVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDL 154
P+++HC G RTGC + L V + Y L+SR ++
Sbjct: 236 PIVVHCSAGAGRTGCYIVIDIMLDMAEREGVVDIYNCVKALRSRRINM 283
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 107 PVLIHCKRGKHRTGCLVGCLRKLQN 131
P++IHC G RTG + R LQ+
Sbjct: 220 PMIIHCSAGVGRTGTFIALDRLLQH 244
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 107 PVLIHCKRGKHRTGCLVGCLRKLQN 131
P++IHC G RTG + R LQ+
Sbjct: 218 PMIIHCSAGVGRTGTFIALDRLLQH 242
>pdb|2ADC|A Chain A, Solution Structure Of Polypyrimidine Tract Binding Protein
Rbd34 Complexed With Cucucu Rna
pdb|2EVZ|A Chain A, Structure Of Rna Binding Domains 3 And 4 Of Polypyrimidine
Tract Binding Protein
Length = 229
Score = 28.5 bits (62), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 28 IYRSSFPQSSNF----PFLQTLNLRSIIYLCPEPYPEENLKFLAAQN---IRLFHFGIEG 80
++R P S NF P TL+L +I P EE+LK L + N ++ F F
Sbjct: 133 LHRFKKPGSKNFQNIFPPSATLHLSNI----PPSVSEEDLKVLFSSNGGVVKGFKF--FQ 186
Query: 81 KTEPPVSIPKDTIMEALKILIDVRNH 106
K I ++ EA++ LID+ NH
Sbjct: 187 KDRKMALIQMGSVEEAVQALIDLHNH 212
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 7/46 (15%)
Query: 84 PPVSIPKDTIMEALKILIDVRN------HPVLIHCKRGKHRTGCLV 123
P +P D+ + L + VRN PV++HC G RTG L+
Sbjct: 211 PDHGVPDDS-SDFLDFVCHVRNKRAGKEEPVVVHCSAGIGRTGVLI 255
>pdb|1QM9|A Chain A, Nmr, Representative Structure
Length = 198
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 13/86 (15%)
Query: 28 IYRSSFPQSSNF----PFLQTLNLRSIIYLCPEPYPEENLKFLAAQN---IRLFHFGIEG 80
++R P S NF P TL+L +I P EE+LK L + N ++ F F
Sbjct: 102 LHRFKKPGSKNFQNIFPPSATLHLSNI----PPSVSEEDLKVLFSSNGGVVKGFKF--FQ 155
Query: 81 KTEPPVSIPKDTIMEALKILIDVRNH 106
K I ++ EA++ LID+ NH
Sbjct: 156 KDRKMALIQMGSVEEAVQALIDLHNH 181
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase N14 At 1.65 A Resolution
Length = 325
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWCL 134
R+ P+++HC G RTG L+ L +L +CL
Sbjct: 251 RHPPIVVHCSAGVGRTGVLI--LSELMIYCL 279
>pdb|3L8A|A Chain A, Crystal Structure Of Metc From Streptococcus Mutans
pdb|3L8A|B Chain B, Crystal Structure Of Metc From Streptococcus Mutans
Length = 421
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 75 HFGIEGK--TEPPVSIPKDTIMEALKILIDV 103
HFG EGK V+ PK+T+ EAL +I V
Sbjct: 388 HFGKEGKYFARLNVATPKNTVQEALSRIISV 418
>pdb|2YF0|A Chain A, Human Myotubularin Related Protein 6 (Mtmr6)
Length = 512
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 12/78 (15%)
Query: 92 TIMEALKIL---IDVRNHPVLIHCKRGKHRTG--CLVGCLRKLQNWCLSSVFEEYRHFAG 146
+M+A L I V N VL+HC G RT C +G L L S + + F
Sbjct: 313 AVMDAAVFLAKAITVENASVLVHCSDGWDRTSQVCSLGSL------LLDSYYRTIKGFMV 366
Query: 147 LKSRDTDLKFMETFNVMC 164
L +D + F F+ C
Sbjct: 367 LIEKDW-ISFGHKFSERC 383
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase Ptpn5 (step, Striatum Enriched Enriched
Phosphatase)
Length = 305
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 107 PVLIHCKRGKHRTGCLVG 124
P+++HC G RTGC +
Sbjct: 233 PIIVHCSAGIGRTGCFIA 250
>pdb|4H0O|A Chain A, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
pdb|4H0O|B Chain B, Crystal Structure Of Acetate Kinase From Entamoeba
Histolytica
Length = 404
Score = 27.7 bits (60), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 26/109 (23%)
Query: 18 PPNFSMVEEGIYRSSFPQSSNF-----PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIR 72
P +F ++E I P + + F T++ Y P+PY + LK
Sbjct: 131 PSSFGVIE--ISMKELPTTRQYVAIDTAFHSTISQAERTYAIPQPYQSQYLK-------- 180
Query: 73 LFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGC 121
FG G + + ++ +LK +IDV +H +I C G + C
Sbjct: 181 ---FGFHG-------LSYEYVINSLKNVIDV-SHSKIIACHLGTGGSSC 218
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 107 PVLIHCKRGKHRTGCLV 123
P+++HC G RTGC +
Sbjct: 212 PLVVHCSAGAGRTGCFI 228
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 107 PVLIHCKRGKHRTGCLVG 124
P+++HC G RTGC +
Sbjct: 235 PIVVHCSAGIGRTGCFIA 252
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a
Mutant
Length = 309
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 107 PVLIHCKRGKHRTGCLVG 124
P+++HC G RTGC +
Sbjct: 235 PIVVHCSAGIGRTGCFIA 252
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 107 PVLIHCKRGKHRTGCLVG 124
P+++HC G RTGC +
Sbjct: 235 PIVVHCSAGIGRTGCFIA 252
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine
Phosphatase, Ptpn7 (Heptp, Hematopoietic Protein
Tyrosine Phosphatase)
Length = 296
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 107 PVLIHCKRGKHRTGCLVG 124
P+++HC G RTGC +
Sbjct: 224 PIVVHCSAGIGRTGCFIA 241
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd
Loop
Length = 308
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 107 PVLIHCKRGKHRTGCLVG 124
P+++HC G RTGC +
Sbjct: 234 PIVVHCSAGIGRTGCFIA 251
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 107 PVLIHCKRGKHRTGCLV 123
P+++HC G RTGC +
Sbjct: 220 PMVVHCSAGVGRTGCFI 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,150,753
Number of Sequences: 62578
Number of extensions: 242003
Number of successful extensions: 567
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 63
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)