Query 028894
Match_columns 202
No_of_seqs 193 out of 1378
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 04:12:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03162 Y_phosphatase2: Tyros 100.0 2E-45 4.2E-50 290.6 10.1 152 15-166 1-152 (164)
2 KOG1572 Predicted protein tyro 100.0 6.8E-40 1.5E-44 266.6 16.0 185 9-193 48-237 (249)
3 smart00195 DSPc Dual specifici 99.9 2.5E-22 5.4E-27 153.4 14.0 127 22-159 2-131 (138)
4 TIGR01244 conserved hypothetic 99.9 5.3E-22 1.1E-26 152.2 13.0 118 21-145 2-125 (135)
5 PF13350 Y_phosphatase3: Tyros 99.9 8.9E-23 1.9E-27 161.0 7.6 122 21-144 13-163 (164)
6 cd00127 DSPc Dual specificity 99.9 2E-21 4.4E-26 147.9 12.5 129 21-158 2-133 (139)
7 PTZ00242 protein tyrosine phos 99.8 1.2E-19 2.7E-24 143.7 15.6 137 19-162 9-156 (166)
8 PTZ00393 protein tyrosine phos 99.8 5.8E-19 1.3E-23 145.8 15.4 129 28-163 94-228 (241)
9 PF00782 DSPc: Dual specificit 99.8 3.7E-19 8.1E-24 134.8 10.1 122 28-158 1-125 (133)
10 PRK12361 hypothetical protein; 99.8 2.5E-18 5.3E-23 158.8 14.6 138 19-162 93-235 (547)
11 PF04273 DUF442: Putative phos 99.8 6E-19 1.3E-23 130.7 8.2 100 21-127 2-107 (110)
12 PLN02727 NAD kinase 99.7 4.6E-18 1E-22 160.9 10.7 99 27-129 262-365 (986)
13 COG2365 Protein tyrosine/serin 99.7 1.1E-17 2.4E-22 140.5 9.0 130 16-149 43-180 (249)
14 KOG1720 Protein tyrosine phosp 99.7 1.3E-16 2.9E-21 128.4 13.4 127 12-145 44-188 (225)
15 COG3453 Uncharacterized protei 99.7 1.1E-15 2.4E-20 112.9 11.4 113 21-140 3-121 (130)
16 PF05706 CDKN3: Cyclin-depende 99.6 8.2E-16 1.8E-20 120.6 9.7 118 17-138 25-168 (168)
17 KOG1719 Dual specificity phosp 99.6 9.8E-15 2.1E-19 112.6 11.7 123 20-145 24-150 (183)
18 KOG1717 Dual specificity phosp 99.6 5.7E-15 1.2E-19 122.8 10.4 129 7-145 160-292 (343)
19 KOG1716 Dual specificity phosp 99.6 3.5E-14 7.6E-19 121.5 12.1 134 19-160 73-209 (285)
20 KOG1718 Dual specificity phosp 99.5 8.2E-14 1.8E-18 108.9 11.8 124 17-150 13-139 (198)
21 KOG2836 Protein tyrosine phosp 99.5 9.7E-13 2.1E-17 99.4 11.3 129 28-163 19-155 (173)
22 COG2453 CDC14 Predicted protei 99.3 1.6E-11 3.4E-16 98.4 11.4 78 65-146 67-148 (180)
23 smart00404 PTPc_motif Protein 98.9 4.8E-09 1E-13 75.1 7.5 72 73-147 5-88 (105)
24 smart00012 PTPc_DSPc Protein t 98.9 4.8E-09 1E-13 75.1 7.5 72 73-147 5-88 (105)
25 PF14566 PTPlike_phytase: Inos 98.9 1.1E-08 2.4E-13 79.6 8.0 65 61-129 83-148 (149)
26 cd00047 PTPc Protein tyrosine 98.6 2E-07 4.2E-12 76.9 8.3 58 90-147 147-214 (231)
27 PRK15375 pathogenicity island 98.5 8.6E-07 1.9E-11 80.5 10.0 54 108-161 469-524 (535)
28 smart00194 PTPc Protein tyrosi 98.5 9.1E-07 2E-11 74.2 9.2 58 90-147 175-241 (258)
29 KOG2283 Clathrin coat dissocia 98.3 1.4E-06 3E-11 78.5 6.0 134 20-162 14-172 (434)
30 PHA02740 protein tyrosine phos 98.2 1.6E-05 3.4E-10 68.6 10.6 44 105-148 221-270 (298)
31 PHA02742 protein tyrosine phos 98.2 1.2E-05 2.6E-10 69.5 9.6 43 105-147 229-277 (303)
32 KOG2386 mRNA capping enzyme, g 98.1 6.7E-06 1.5E-10 72.9 6.2 108 38-148 53-168 (393)
33 PHA02747 protein tyrosine phos 98.1 2.4E-05 5.1E-10 68.0 9.3 42 106-147 230-277 (312)
34 PHA02746 protein tyrosine phos 98.1 2.5E-05 5.3E-10 68.2 9.3 43 105-147 247-295 (323)
35 COG5599 PTP2 Protein tyrosine 98.0 4E-06 8.7E-11 70.4 3.8 39 90-128 201-241 (302)
36 PHA02738 hypothetical protein; 98.0 5.4E-05 1.2E-09 65.9 9.3 44 105-148 227-276 (320)
37 PF00102 Y_phosphatase: Protei 97.9 3.4E-05 7.5E-10 62.8 6.9 58 90-147 152-218 (235)
38 COG5350 Predicted protein tyro 97.8 0.00049 1.1E-08 53.5 10.6 118 40-163 26-151 (172)
39 KOG0791 Protein tyrosine phosp 97.5 0.00029 6.2E-09 61.7 7.4 41 90-130 269-312 (374)
40 KOG0792 Protein tyrosine phosp 97.5 0.00025 5.5E-09 69.0 7.5 58 90-147 1045-1111(1144)
41 KOG0789 Protein tyrosine phosp 97.2 0.0015 3.3E-08 58.0 8.6 41 104-144 298-345 (415)
42 KOG0790 Protein tyrosine phosp 97.1 0.00073 1.6E-08 60.7 4.9 59 89-147 430-502 (600)
43 KOG4228 Protein tyrosine phosp 96.7 0.0014 3E-08 64.4 3.9 71 91-161 713-791 (1087)
44 KOG0793 Protein tyrosine phosp 95.3 0.039 8.6E-07 52.3 5.9 57 89-145 908-971 (1004)
45 PF04179 Init_tRNA_PT: Initiat 95.0 0.17 3.6E-06 46.3 9.2 102 21-127 289-398 (451)
46 cd01448 TST_Repeat_1 Thiosulfa 94.8 0.24 5.1E-06 36.3 8.0 44 89-133 63-106 (122)
47 KOG4228 Protein tyrosine phosp 94.3 0.034 7.4E-07 55.0 3.1 33 104-136 1017-1049(1087)
48 PF04343 DUF488: Protein of un 94.3 0.23 5E-06 36.9 7.0 42 40-81 7-55 (122)
49 PF06602 Myotub-related: Myotu 94.2 0.089 1.9E-06 46.5 5.3 27 103-129 229-255 (353)
50 KOG4471 Phosphatidylinositol 3 94.2 0.073 1.6E-06 49.7 4.7 24 103-126 372-395 (717)
51 PLN02160 thiosulfate sulfurtra 94.1 0.25 5.4E-06 37.6 6.9 86 38-133 21-107 (136)
52 cd01518 RHOD_YceA Member of th 93.7 0.25 5.5E-06 35.0 6.0 29 103-133 59-87 (101)
53 COG0607 PspE Rhodanese-related 93.4 0.54 1.2E-05 33.3 7.4 75 40-134 13-88 (110)
54 KOG1089 Myotubularin-related p 92.5 0.19 4.2E-06 46.8 4.7 27 103-129 342-368 (573)
55 cd01533 4RHOD_Repeat_2 Member 92.3 0.44 9.4E-06 34.3 5.6 43 89-133 50-92 (109)
56 TIGR02990 ectoine_eutA ectoine 90.3 1.8 3.9E-05 36.2 8.1 91 39-132 112-207 (239)
57 smart00450 RHOD Rhodanese Homo 89.7 2.6 5.7E-05 28.5 7.4 30 103-134 54-83 (100)
58 KOG1530 Rhodanese-related sulf 89.2 2.2 4.7E-05 32.6 6.9 83 40-133 31-115 (136)
59 PRK01415 hypothetical protein; 89.0 1.2 2.6E-05 37.6 6.0 29 103-133 169-197 (247)
60 COG3473 Maleate cis-trans isom 88.7 4 8.7E-05 33.7 8.5 93 37-132 108-205 (238)
61 PF00581 Rhodanese: Rhodanese- 86.7 4.8 0.0001 28.2 7.3 75 44-125 10-86 (113)
62 PRK00142 putative rhodanese-re 85.5 3 6.4E-05 36.4 6.7 28 104-133 170-197 (314)
63 PRK11784 tRNA 2-selenouridine 84.5 3.7 8.1E-05 36.2 6.9 29 104-133 87-115 (345)
64 cd01519 RHOD_HSP67B2 Member of 84.1 2.2 4.8E-05 30.0 4.5 43 89-133 50-92 (106)
65 TIGR02981 phageshock_pspE phag 83.7 1.7 3.8E-05 31.2 3.7 74 40-133 11-84 (101)
66 cd01522 RHOD_1 Member of the R 83.2 5.9 0.00013 28.9 6.5 29 103-133 62-90 (117)
67 cd01443 Cdc25_Acr2p Cdc25 enzy 82.6 4.3 9.3E-05 29.2 5.6 22 104-125 65-86 (113)
68 cd01523 RHOD_Lact_B Member of 82.5 1.9 4E-05 30.3 3.5 28 104-133 60-87 (100)
69 cd01444 GlpE_ST GlpE sulfurtra 81.4 5.8 0.00012 27.2 5.7 41 89-133 42-82 (96)
70 cd01534 4RHOD_Repeat_3 Member 81.4 5 0.00011 27.8 5.4 28 104-133 55-82 (95)
71 PRK10287 thiosulfate:cyanide s 81.3 5.6 0.00012 28.7 5.7 43 89-133 44-86 (104)
72 PRK05600 thiamine biosynthesis 80.8 4.2 9E-05 36.2 5.8 26 106-133 333-358 (370)
73 PF13292 DXP_synthase_N: 1-deo 80.8 2.2 4.8E-05 36.4 3.8 41 64-113 229-269 (270)
74 cd01528 RHOD_2 Member of the R 80.2 6.6 0.00014 27.5 5.7 41 91-133 43-84 (101)
75 PF14671 DSPn: Dual specificit 79.0 6.6 0.00014 30.3 5.7 39 105-143 66-109 (141)
76 PLN02225 1-deoxy-D-xylulose-5- 78.9 3.4 7.4E-05 39.9 4.9 47 64-118 320-367 (701)
77 COG1154 Dxs Deoxyxylulose-5-ph 75.6 4.7 0.0001 38.2 4.7 44 64-116 237-280 (627)
78 cd03174 DRE_TIM_metallolyase D 75.1 13 0.00027 30.7 6.9 82 39-128 121-210 (265)
79 PLN02582 1-deoxy-D-xylulose-5- 74.8 6.5 0.00014 37.9 5.6 42 65-114 277-319 (677)
80 PRK11493 sseA 3-mercaptopyruva 74.4 5.1 0.00011 34.0 4.4 43 90-134 216-258 (281)
81 cd01449 TST_Repeat_2 Thiosulfa 72.9 6.5 0.00014 28.2 4.1 42 90-133 63-104 (118)
82 PRK05320 rhodanese superfamily 71.9 7.8 0.00017 32.7 4.8 28 104-133 174-201 (257)
83 cd07944 DRE_TIM_HOA_like 4-hyd 71.3 39 0.00084 28.5 9.0 81 40-128 116-203 (266)
84 cd01532 4RHOD_Repeat_1 Member 70.7 17 0.00037 25.0 5.7 30 104-133 49-78 (92)
85 PRK09875 putative hydrolase; P 70.4 17 0.00036 31.4 6.6 37 38-74 39-78 (292)
86 PRK01269 tRNA s(4)U8 sulfurtra 69.6 10 0.00022 35.0 5.4 28 104-133 448-475 (482)
87 PF02571 CbiJ: Precorrin-6x re 69.4 7.9 0.00017 32.6 4.3 80 30-111 48-136 (249)
88 cd07943 DRE_TIM_HOA 4-hydroxy- 69.2 22 0.00047 29.8 7.0 80 40-127 119-204 (263)
89 cd01530 Cdc25 Cdc25 phosphatas 68.3 6.7 0.00014 28.9 3.3 24 104-128 67-91 (121)
90 TIGR03167 tRNA_sel_U_synt tRNA 68.0 28 0.0006 30.3 7.5 26 107-133 76-101 (311)
91 cd01521 RHOD_PspE2 Member of t 67.6 10 0.00022 27.1 4.1 30 104-133 63-92 (110)
92 TIGR03865 PQQ_CXXCW PQQ-depend 65.8 15 0.00032 28.7 5.0 30 103-133 114-143 (162)
93 cd01529 4RHOD_Repeats Member o 65.6 10 0.00023 26.2 3.8 29 103-133 54-82 (96)
94 cd01527 RHOD_YgaP Member of th 65.5 11 0.00023 26.2 3.8 23 104-127 53-75 (99)
95 PRK00162 glpE thiosulfate sulf 64.9 22 0.00049 25.1 5.5 40 90-133 45-84 (108)
96 PF05925 IpgD: Enterobacterial 63.8 2.3 4.9E-05 39.5 0.0 22 105-126 453-474 (559)
97 PLN02723 3-mercaptopyruvate su 63.4 17 0.00037 31.5 5.4 44 89-134 253-296 (320)
98 cd01447 Polysulfide_ST Polysul 62.4 10 0.00022 26.2 3.2 28 104-133 60-87 (103)
99 PRK12331 oxaloacetate decarbox 62.4 55 0.0012 30.0 8.6 81 40-128 130-217 (448)
100 PRK09629 bifunctional thiosulf 60.4 19 0.00042 34.3 5.5 44 89-134 207-250 (610)
101 cd01520 RHOD_YbbB Member of th 59.5 16 0.00034 27.0 3.9 29 104-133 85-113 (128)
102 PRK15378 inositol phosphate ph 58.4 7.6 0.00017 35.9 2.3 18 109-126 460-477 (564)
103 cd01525 RHOD_Kc Member of the 58.4 18 0.0004 25.2 4.0 28 104-133 64-91 (105)
104 cd01526 RHOD_ThiF Member of th 57.5 27 0.00058 25.4 4.9 27 104-132 71-97 (122)
105 PF00682 HMGL-like: HMGL-like 57.0 58 0.0012 26.5 7.3 82 39-128 114-201 (237)
106 smart00400 ZnF_CHCC zinc finge 56.0 16 0.00034 23.0 3.0 31 109-140 23-53 (55)
107 COG5016 Pyruvate/oxaloacetate 56.0 48 0.001 30.2 6.9 64 62-133 161-226 (472)
108 PRK11858 aksA trans-homoaconit 55.9 1.1E+02 0.0023 27.3 9.3 70 40-114 123-197 (378)
109 TIGR02571 ComEB ComE operon pr 55.6 25 0.00054 27.3 4.6 51 28-78 90-140 (151)
110 cd07037 TPP_PYR_MenD Pyrimidin 55.5 94 0.002 24.2 7.9 78 39-128 4-82 (162)
111 PRK08195 4-hyroxy-2-oxovalerat 55.1 1.1E+02 0.0024 26.8 9.0 72 39-115 121-199 (337)
112 PRK12581 oxaloacetate decarbox 55.1 91 0.002 28.9 8.7 82 39-128 138-226 (468)
113 TIGR00204 dxs 1-deoxy-D-xylulo 54.5 22 0.00048 33.9 4.9 44 66-118 234-277 (617)
114 TIGR02660 nifV_homocitr homoci 54.4 1.5E+02 0.0033 26.2 9.9 71 39-114 119-194 (365)
115 PRK07414 cob(I)yrinic acid a,c 54.1 20 0.00044 28.7 3.9 30 104-133 20-49 (178)
116 cd01445 TST_Repeats Thiosulfat 53.7 17 0.00037 27.4 3.3 45 90-134 80-125 (138)
117 PLN02234 1-deoxy-D-xylulose-5- 53.6 30 0.00065 33.2 5.6 48 63-118 276-324 (641)
118 cd07938 DRE_TIM_HMGL 3-hydroxy 53.3 67 0.0014 27.3 7.2 81 39-127 120-212 (274)
119 cd07939 DRE_TIM_NifV Streptomy 52.8 1.3E+02 0.0029 24.9 9.3 71 40-115 117-192 (259)
120 cd01531 Acr2p Eukaryotic arsen 52.5 26 0.00055 25.0 4.0 23 104-126 61-83 (113)
121 TIGR03569 NeuB_NnaB N-acetylne 52.1 15 0.00032 32.4 3.0 84 28-115 67-173 (329)
122 PRK09389 (R)-citramalate synth 51.8 1.2E+02 0.0027 28.0 9.2 70 40-114 121-195 (488)
123 TIGR03217 4OH_2_O_val_ald 4-hy 51.7 1.1E+02 0.0025 26.7 8.6 72 40-116 121-199 (333)
124 PF00282 Pyridoxal_deC: Pyrido 51.7 34 0.00074 30.3 5.4 68 49-121 142-209 (373)
125 PRK14040 oxaloacetate decarbox 51.6 70 0.0015 30.5 7.7 57 64-128 162-218 (593)
126 cd07948 DRE_TIM_HCS Saccharomy 51.4 85 0.0018 26.5 7.5 71 40-115 119-194 (262)
127 cd01524 RHOD_Pyr_redox Member 50.5 56 0.0012 22.1 5.4 39 90-132 38-76 (90)
128 PRK11493 sseA 3-mercaptopyruva 50.0 37 0.0008 28.7 5.1 44 89-133 71-114 (281)
129 PF00762 Ferrochelatase: Ferro 49.8 52 0.0011 28.6 6.1 44 38-81 246-300 (316)
130 PRK14042 pyruvate carboxylase 49.8 1.6E+02 0.0034 28.2 9.7 82 39-128 129-217 (596)
131 TIGR03799 NOD_PanD_pyr putativ 49.1 60 0.0013 30.3 6.7 57 61-121 221-280 (522)
132 TIGR02090 LEU1_arch isopropylm 48.8 1.6E+02 0.0034 26.1 9.1 71 39-114 118-193 (363)
133 cd07945 DRE_TIM_CMS Leptospira 47.4 1E+02 0.0022 26.2 7.5 82 39-128 121-211 (280)
134 cd07039 TPP_PYR_POX Pyrimidine 46.8 1.3E+02 0.0029 23.2 9.1 78 39-128 7-85 (164)
135 PRK12571 1-deoxy-D-xylulose-5- 46.8 38 0.00082 32.5 5.2 47 64-118 240-286 (641)
136 COG1054 Predicted sulfurtransf 46.1 1.1E+02 0.0024 26.7 7.3 41 90-132 153-197 (308)
137 PF10302 DUF2407: DUF2407 ubiq 46.1 13 0.00028 26.7 1.5 11 106-116 86-96 (97)
138 TIGR01108 oadA oxaloacetate de 46.0 83 0.0018 29.9 7.2 56 65-128 157-212 (582)
139 PRK05692 hydroxymethylglutaryl 45.7 85 0.0019 26.8 6.7 70 40-114 127-208 (287)
140 TIGR00173 menD 2-succinyl-5-en 44.9 1.6E+02 0.0035 26.5 8.7 77 39-127 7-84 (432)
141 PRK13394 3-hydroxybutyrate deh 43.3 1.2E+02 0.0025 24.4 7.1 70 39-115 24-94 (262)
142 PRK09282 pyruvate carboxylase 42.8 1.1E+02 0.0025 29.0 7.6 56 65-128 162-217 (592)
143 cd07937 DRE_TIM_PC_TC_5S Pyruv 42.5 2E+02 0.0044 24.2 8.5 71 40-115 125-202 (275)
144 PRK08063 enoyl-(acyl carrier p 42.3 1.1E+02 0.0023 24.5 6.6 70 39-115 21-92 (250)
145 PRK07097 gluconate 5-dehydroge 42.2 1.2E+02 0.0026 24.7 7.0 70 40-116 28-98 (265)
146 TIGR02764 spore_ybaN_pdaB poly 41.8 1.7E+02 0.0036 22.9 7.9 60 59-124 109-169 (191)
147 cd07940 DRE_TIM_IPMS 2-isoprop 41.6 2.1E+02 0.0045 23.9 9.0 71 40-115 121-199 (268)
148 PF03102 NeuB: NeuB family; I 41.0 93 0.002 26.1 6.1 69 43-115 66-151 (241)
149 PF03668 ATP_bind_2: P-loop AT 40.8 47 0.001 28.7 4.3 20 107-126 244-263 (284)
150 TIGR01496 DHPS dihydropteroate 40.6 2.2E+02 0.0048 23.9 9.4 78 47-128 2-94 (257)
151 PRK08862 short chain dehydroge 40.2 1.1E+02 0.0024 24.7 6.4 69 40-115 23-93 (227)
152 KOG1529 Mercaptopyruvate sulfu 40.2 53 0.0011 28.3 4.5 40 90-131 221-260 (286)
153 PRK05867 short chain dehydroge 39.8 1.1E+02 0.0024 24.6 6.4 70 39-115 26-96 (253)
154 PF01807 zf-CHC2: CHC2 zinc fi 39.5 46 0.00099 23.6 3.5 36 109-145 54-89 (97)
155 cd07212 Pat_PNPLA9 Patatin-lik 39.5 45 0.00098 28.9 4.1 48 96-145 17-66 (312)
156 PLN02790 transketolase 38.9 61 0.0013 31.2 5.3 50 61-117 191-240 (654)
157 PRK06947 glucose-1-dehydrogena 38.5 1.3E+02 0.0028 24.0 6.6 69 40-115 20-90 (248)
158 COG2897 SseA Rhodanese-related 38.5 80 0.0017 27.2 5.4 37 90-128 219-255 (285)
159 TIGR00715 precor6x_red precorr 38.2 24 0.00053 29.7 2.2 47 30-76 48-98 (256)
160 PRK12937 short chain dehydroge 38.1 1.5E+02 0.0033 23.4 6.9 69 40-115 23-93 (245)
161 PRK08057 cobalt-precorrin-6x r 38.0 29 0.00064 29.1 2.7 77 31-110 48-132 (248)
162 PRK14041 oxaloacetate decarbox 37.5 2.7E+02 0.0059 25.7 9.0 38 88-128 179-216 (467)
163 cd07995 TPK Thiamine pyrophosp 37.2 1.9E+02 0.0042 23.2 7.3 77 38-124 31-109 (208)
164 PRK07710 acetolactate synthase 36.9 2.5E+02 0.0054 26.3 8.9 77 39-127 23-99 (571)
165 PF04255 DUF433: Protein of un 36.8 31 0.00067 21.9 2.0 14 129-142 29-42 (56)
166 PRK08643 acetoin reductase; Va 36.4 1.7E+02 0.0037 23.5 7.0 69 40-115 20-89 (256)
167 PRK07814 short chain dehydroge 36.3 1.3E+02 0.0028 24.5 6.3 70 39-115 27-97 (263)
168 cd01535 4RHOD_Repeat_4 Member 36.2 1.2E+02 0.0026 23.0 5.6 39 90-132 36-74 (145)
169 TIGR02415 23BDH acetoin reduct 36.1 1.7E+02 0.0036 23.4 6.9 69 40-115 18-87 (254)
170 PRK07478 short chain dehydroge 36.1 1.4E+02 0.003 24.0 6.4 70 39-115 23-93 (254)
171 PRK00915 2-isopropylmalate syn 36.0 3.6E+02 0.0079 25.1 9.9 71 39-114 126-205 (513)
172 PF02775 TPP_enzyme_C: Thiamin 35.9 1.3E+02 0.0027 22.6 5.7 42 61-112 112-153 (153)
173 PRK06036 translation initiatio 35.8 59 0.0013 28.7 4.3 25 104-128 147-174 (339)
174 PRK08213 gluconate 5-dehydroge 35.7 1.4E+02 0.0029 24.2 6.3 69 40-115 30-99 (259)
175 PLN02449 ferrochelatase 35.3 1.6E+02 0.0034 27.5 7.1 44 38-81 343-397 (485)
176 PTZ00089 transketolase; Provis 35.2 84 0.0018 30.3 5.5 48 61-115 202-249 (661)
177 COG3830 ACT domain-containing 34.9 22 0.00048 25.3 1.2 24 113-136 8-33 (90)
178 COG2442 Uncharacterized conser 34.9 36 0.00079 23.5 2.3 30 112-142 25-54 (79)
179 PF02880 PGM_PMM_III: Phosphog 34.7 1.7E+02 0.0037 20.9 8.6 80 48-141 22-109 (113)
180 PRK12429 3-hydroxybutyrate deh 34.7 1.8E+02 0.0038 23.2 6.8 69 40-115 22-91 (258)
181 COG0276 HemH Protoheme ferro-l 34.6 1E+02 0.0022 27.1 5.5 44 38-81 248-302 (320)
182 PRK07523 gluconate 5-dehydroge 34.4 1.7E+02 0.0036 23.6 6.6 70 40-116 28-98 (255)
183 PLN02746 hydroxymethylglutaryl 34.3 2.1E+02 0.0045 25.4 7.5 80 40-127 169-260 (347)
184 PF08659 KR: KR domain; Inter 34.3 1.5E+02 0.0033 22.9 6.1 67 40-114 18-90 (181)
185 cd06831 PLPDE_III_ODC_like_AZI 34.1 1.5E+02 0.0032 26.5 6.7 88 28-118 84-177 (394)
186 PF14555 UBA_4: UBA-like domai 33.9 64 0.0014 19.1 3.0 23 121-143 16-38 (43)
187 PRK07666 fabG 3-ketoacyl-(acyl 33.3 1.7E+02 0.0038 23.1 6.5 70 40-116 25-95 (239)
188 PHA02588 cd deoxycytidylate de 33.1 81 0.0018 24.8 4.3 50 28-77 104-154 (168)
189 PRK07411 hypothetical protein; 32.5 53 0.0011 29.4 3.5 28 104-133 341-368 (390)
190 PF10727 Rossmann-like: Rossma 32.2 35 0.00076 25.6 2.0 28 89-116 77-107 (127)
191 cd00158 RHOD Rhodanese Homolog 32.1 1.4E+02 0.0031 19.2 5.2 27 103-131 48-74 (89)
192 PRK12315 1-deoxy-D-xylulose-5- 32.0 1.1E+02 0.0024 28.9 5.7 45 64-117 201-245 (581)
193 PRK08978 acetolactate synthase 32.0 4.1E+02 0.0088 24.6 9.5 78 39-128 8-85 (548)
194 TIGR03586 PseI pseudaminic aci 31.8 46 0.001 29.2 3.0 69 43-115 87-172 (327)
195 COG2089 SpsE Sialic acid synth 31.7 3.4E+02 0.0074 24.1 8.1 65 50-116 104-186 (347)
196 PRK06882 acetolactate synthase 31.7 3.2E+02 0.0069 25.5 8.7 77 39-127 11-88 (574)
197 PRK07413 hypothetical protein; 31.6 66 0.0014 29.0 3.9 29 105-133 200-228 (382)
198 PRK08628 short chain dehydroge 31.5 2.7E+02 0.0059 22.3 7.6 69 39-115 24-93 (258)
199 PRK07454 short chain dehydroge 31.4 1.8E+02 0.0038 23.1 6.3 70 39-115 23-93 (241)
200 PRK12935 acetoacetyl-CoA reduc 31.3 2.5E+02 0.0055 22.2 7.2 69 40-115 24-94 (247)
201 PRK06113 7-alpha-hydroxysteroi 31.3 2.1E+02 0.0045 23.1 6.7 69 40-115 29-98 (255)
202 PF02572 CobA_CobO_BtuR: ATP:c 31.0 66 0.0014 25.5 3.5 30 105-134 3-32 (172)
203 PRK12330 oxaloacetate decarbox 30.7 2E+02 0.0044 26.8 7.1 58 63-128 161-220 (499)
204 PRK08527 acetolactate synthase 30.4 3.9E+02 0.0085 24.9 9.1 39 39-78 10-49 (563)
205 PRK08155 acetolactate synthase 30.4 2.9E+02 0.0064 25.7 8.3 38 39-77 20-58 (564)
206 cd02007 TPP_DXS Thiamine pyrop 30.4 1.9E+02 0.0041 23.0 6.2 27 89-116 165-191 (195)
207 PF00308 Bac_DnaA: Bacterial d 30.2 1.4E+02 0.0029 24.3 5.4 38 91-128 17-57 (219)
208 KOG2931 Differentiation-relate 30.1 1.3E+02 0.0028 26.3 5.3 30 133-162 200-230 (326)
209 PRK12481 2-deoxy-D-gluconate 3 29.9 3E+02 0.0064 22.2 7.6 67 40-115 26-93 (251)
210 PRK08762 molybdopterin biosynt 29.7 1.3E+02 0.0029 26.5 5.6 41 91-133 43-83 (376)
211 cd07038 TPP_PYR_PDC_IPDC_like 29.7 2.6E+02 0.0056 21.4 7.9 77 39-128 4-81 (162)
212 cd02952 TRP14_like Human TRX-r 29.7 47 0.001 24.6 2.3 50 93-142 9-58 (119)
213 COG1165 MenD 2-succinyl-6-hydr 29.6 3E+02 0.0065 26.2 7.9 66 39-116 15-81 (566)
214 TIGR00853 pts-lac PTS system, 29.6 86 0.0019 22.1 3.6 27 105-132 3-32 (95)
215 PRK06139 short chain dehydroge 29.4 1.7E+02 0.0036 25.3 6.1 68 40-114 25-93 (330)
216 PRK06965 acetolactate synthase 29.3 3.8E+02 0.0082 25.2 8.8 77 39-127 28-105 (587)
217 PRK07789 acetolactate synthase 29.2 4E+02 0.0086 25.2 9.0 77 39-127 38-115 (612)
218 TIGR00118 acolac_lg acetolacta 29.2 4.2E+02 0.009 24.6 9.0 77 39-127 8-85 (558)
219 PRK08199 thiamine pyrophosphat 28.9 3E+02 0.0066 25.6 8.1 77 39-127 15-92 (557)
220 PRK07064 hypothetical protein; 28.9 4.5E+02 0.0097 24.2 9.2 77 39-127 10-87 (544)
221 PRK08322 acetolactate synthase 28.6 4.4E+02 0.0095 24.3 9.0 77 39-127 8-84 (547)
222 COG1660 Predicted P-loop-conta 28.6 86 0.0019 27.0 3.9 20 107-126 245-264 (286)
223 PRK06128 oxidoreductase; Provi 28.6 3.1E+02 0.0067 22.9 7.5 69 40-115 73-144 (300)
224 PRK05650 short chain dehydroge 28.4 2.4E+02 0.0053 22.9 6.7 69 40-115 18-87 (270)
225 PRK08277 D-mannonate oxidoredu 28.4 2.4E+02 0.0053 23.0 6.7 69 40-115 28-97 (278)
226 PRK08936 glucose-1-dehydrogena 28.4 2.5E+02 0.0054 22.7 6.7 69 40-115 25-95 (261)
227 PRK06181 short chain dehydroge 28.4 2.4E+02 0.0051 22.7 6.6 28 89-116 61-89 (263)
228 TIGR01839 PHA_synth_II poly(R) 28.1 4.1E+02 0.009 25.2 8.7 65 48-115 228-299 (560)
229 PRK05866 short chain dehydroge 28.1 2E+02 0.0043 24.1 6.2 70 40-116 58-128 (293)
230 PRK06194 hypothetical protein; 27.8 3.2E+02 0.0069 22.3 7.3 70 40-116 24-94 (287)
231 PRK06701 short chain dehydroge 27.6 3.6E+02 0.0078 22.4 7.7 69 40-115 64-134 (290)
232 PRK12435 ferrochelatase; Provi 27.4 1E+02 0.0023 26.7 4.4 44 38-81 237-291 (311)
233 COG4806 RhaA L-rhamnose isomer 27.4 43 0.00093 29.1 1.9 25 94-121 24-48 (419)
234 PRK05876 short chain dehydroge 27.4 2.3E+02 0.0051 23.3 6.5 68 40-114 24-92 (275)
235 PRK06463 fabG 3-ketoacyl-(acyl 26.9 3.3E+02 0.0072 21.8 7.9 65 39-115 24-89 (255)
236 PF04851 ResIII: Type III rest 26.8 2.1E+02 0.0046 21.2 5.7 37 92-128 11-48 (184)
237 TIGR01838 PHA_synth_I poly(R)- 26.7 3.2E+02 0.007 25.7 7.7 65 49-116 202-274 (532)
238 COG0787 Alr Alanine racemase [ 26.7 2.3E+02 0.005 25.3 6.5 70 40-122 67-138 (360)
239 cd07941 DRE_TIM_LeuA3 Desulfob 26.7 3.9E+02 0.0084 22.5 8.1 71 40-115 126-205 (273)
240 PRK12344 putative alpha-isopro 26.6 5.3E+02 0.012 24.1 9.2 71 39-114 132-210 (524)
241 COG1448 TyrB Aspartate/tyrosin 26.4 3.2E+02 0.007 24.7 7.2 70 40-114 112-182 (396)
242 PRK05653 fabG 3-ketoacyl-(acyl 26.3 3.2E+02 0.0069 21.4 7.1 70 39-116 22-93 (246)
243 cd05567 PTS_IIB_mannitol PTS_I 26.2 1E+02 0.0022 21.1 3.4 22 107-128 2-23 (87)
244 PRK07677 short chain dehydroge 26.2 2.6E+02 0.0057 22.4 6.4 70 40-116 19-89 (252)
245 TIGR00977 LeuA_rel 2-isopropyl 26.2 4.8E+02 0.01 24.5 8.8 71 39-114 128-207 (526)
246 PRK06371 translation initiatio 26.0 1.1E+02 0.0024 26.9 4.3 25 104-128 136-163 (329)
247 PRK08617 acetolactate synthase 26.0 3.5E+02 0.0076 25.1 7.9 39 39-78 12-50 (552)
248 PRK12939 short chain dehydroge 25.9 3E+02 0.0065 21.7 6.7 70 40-116 25-95 (250)
249 PRK06138 short chain dehydroge 25.8 3.1E+02 0.0067 21.7 6.8 68 40-115 23-91 (252)
250 cd01310 TatD_DNAse TatD like p 25.6 1.4E+02 0.0031 23.8 4.8 22 93-115 110-131 (251)
251 PRK05416 glmZ(sRNA)-inactivati 25.5 1.1E+02 0.0025 26.2 4.2 17 108-124 248-264 (288)
252 PRK10318 hypothetical protein; 25.5 82 0.0018 23.6 2.9 28 93-120 73-103 (121)
253 PF13607 Succ_CoA_lig: Succiny 25.4 1.9E+02 0.0041 21.9 5.0 69 44-121 25-96 (138)
254 cd02012 TPP_TK Thiamine pyroph 25.2 2E+02 0.0044 23.8 5.7 49 61-118 182-230 (255)
255 PLN03228 methylthioalkylmalate 25.2 3.4E+02 0.0074 25.4 7.5 71 39-114 215-295 (503)
256 KOG0025 Zn2+-binding dehydroge 25.1 3.3E+02 0.0072 24.0 6.9 20 107-128 235-254 (354)
257 PF15192 TMEM213: TMEM213 fami 24.9 33 0.00072 23.4 0.7 21 110-134 36-56 (82)
258 PRK08589 short chain dehydroge 24.6 3E+02 0.0066 22.5 6.6 68 40-115 24-92 (272)
259 PLN02723 3-mercaptopyruvate su 24.5 1.8E+02 0.0038 25.2 5.3 44 89-133 87-130 (320)
260 PRK06172 short chain dehydroge 24.3 3E+02 0.0064 22.0 6.4 69 40-115 25-94 (253)
261 PRK09287 6-phosphogluconate de 24.3 4.1E+02 0.0088 24.5 7.8 68 48-115 83-164 (459)
262 PRK07774 short chain dehydroge 24.2 2.9E+02 0.0064 21.9 6.4 69 40-115 24-93 (250)
263 PRK08334 translation initiatio 23.9 1.1E+02 0.0025 27.2 4.0 22 107-128 162-186 (356)
264 PRK05986 cob(I)alamin adenolsy 23.9 99 0.0022 25.0 3.4 26 104-129 21-46 (191)
265 PRK06048 acetolactate synthase 23.5 6E+02 0.013 23.6 9.3 39 39-78 15-53 (561)
266 PRK07282 acetolactate synthase 23.4 6.1E+02 0.013 23.7 9.1 38 39-77 17-55 (566)
267 PRK12753 transketolase; Review 23.4 1.7E+02 0.0036 28.3 5.3 46 61-114 200-245 (663)
268 PRK12999 pyruvate carboxylase; 23.4 4.5E+02 0.0098 27.3 8.6 56 65-128 699-754 (1146)
269 cd02067 B12-binding B12 bindin 23.3 2.8E+02 0.0061 19.7 7.1 57 40-103 21-77 (119)
270 PRK07024 short chain dehydroge 23.2 2.5E+02 0.0053 22.7 5.8 26 90-115 62-88 (257)
271 PRK06935 2-deoxy-D-gluconate 3 23.2 4E+02 0.0086 21.4 7.3 69 40-116 33-102 (258)
272 PF02776 TPP_enzyme_N: Thiamin 23.1 1.9E+02 0.0041 22.2 4.8 77 39-127 8-85 (172)
273 PLN02439 arginine decarboxylas 23.1 5.1E+02 0.011 24.6 8.4 74 43-117 104-193 (559)
274 TIGR00109 hemH ferrochelatase. 23.1 2.5E+02 0.0055 24.3 6.0 44 38-81 251-305 (322)
275 PRK07035 short chain dehydroge 23.1 3.4E+02 0.0073 21.6 6.6 70 39-115 25-95 (252)
276 PLN02470 acetolactate synthase 23.1 6.2E+02 0.014 23.7 9.1 37 39-76 20-57 (585)
277 PRK12826 3-ketoacyl-(acyl-carr 23.1 3.8E+02 0.0082 21.1 7.0 70 40-116 24-94 (251)
278 PRK06457 pyruvate dehydrogenas 23.0 6.1E+02 0.013 23.5 9.1 77 39-127 9-85 (549)
279 PRK06466 acetolactate synthase 23.0 6E+02 0.013 23.7 8.9 38 39-77 11-49 (574)
280 PF02126 PTE: Phosphotriestera 22.7 58 0.0013 28.3 1.9 99 38-137 43-186 (308)
281 PRK08085 gluconate 5-dehydroge 22.6 3.8E+02 0.0083 21.4 6.8 69 40-115 27-96 (254)
282 COG0794 GutQ Predicted sugar p 22.5 2E+02 0.0044 23.5 4.9 35 90-128 25-59 (202)
283 cd06810 PLPDE_III_ODC_DapDC_li 22.4 3.2E+02 0.0068 23.6 6.6 88 28-116 73-173 (368)
284 PRK07063 short chain dehydroge 22.3 3.6E+02 0.0078 21.6 6.6 68 40-114 25-95 (260)
285 PF09314 DUF1972: Domain of un 22.2 2.7E+02 0.0059 22.3 5.6 40 40-82 28-67 (185)
286 PRK08340 glucose-1-dehydrogena 22.2 2.8E+02 0.0061 22.3 5.9 27 89-115 59-86 (259)
287 PRK07890 short chain dehydroge 22.2 2.9E+02 0.0064 22.0 6.0 69 40-115 23-92 (258)
288 TIGR03206 benzo_BadH 2-hydroxy 22.0 3.3E+02 0.0072 21.5 6.3 28 89-116 63-91 (250)
289 PRK07109 short chain dehydroge 21.6 2.9E+02 0.0062 23.7 6.1 69 40-115 26-95 (334)
290 PRK07106 5-aminoimidazole-4-ca 21.6 1.6E+02 0.0035 26.5 4.5 45 34-78 341-385 (390)
291 PRK07791 short chain dehydroge 21.5 4.4E+02 0.0096 21.8 7.1 69 40-115 24-102 (286)
292 PRK07413 hypothetical protein; 21.5 1.2E+02 0.0025 27.4 3.6 28 104-131 18-45 (382)
293 PRK06114 short chain dehydroge 21.4 4.3E+02 0.0093 21.1 7.5 69 40-115 26-96 (254)
294 PRK07062 short chain dehydroge 21.3 4.2E+02 0.0092 21.3 6.8 69 40-115 26-97 (265)
295 cd00561 CobA_CobO_BtuR ATP:cor 21.3 1.2E+02 0.0027 23.6 3.4 24 106-129 3-26 (159)
296 PLN02350 phosphogluconate dehy 21.3 4.4E+02 0.0094 24.6 7.4 69 47-115 100-181 (493)
297 PRK06949 short chain dehydroge 21.2 3.5E+02 0.0076 21.5 6.3 70 39-115 26-96 (258)
298 PF13377 Peripla_BP_3: Peripla 21.2 3.3E+02 0.0072 19.8 7.7 85 40-133 2-93 (160)
299 PRK06123 short chain dehydroge 21.1 3.4E+02 0.0073 21.5 6.1 69 40-115 20-90 (248)
300 PRK07449 2-succinyl-5-enolpyru 21.1 5.9E+02 0.013 23.6 8.4 76 39-126 16-92 (568)
301 cd00568 TPP_enzymes Thiamine p 21.1 3.6E+02 0.0077 20.1 6.2 41 61-113 127-167 (168)
302 TIGR01235 pyruv_carbox pyruvat 21.1 3.1E+02 0.0068 28.4 6.9 58 63-128 695-752 (1143)
303 PF00106 adh_short: short chai 21.0 2.8E+02 0.0062 20.3 5.4 70 41-117 19-92 (167)
304 PRK12743 oxidoreductase; Provi 21.0 4.4E+02 0.0096 21.1 7.1 70 40-116 20-91 (256)
305 PRK01045 ispH 4-hydroxy-3-meth 21.0 5.3E+02 0.011 22.3 7.5 70 36-115 43-123 (298)
306 PF02673 BacA: Bacitracin resi 21.0 1.1E+02 0.0025 25.8 3.3 26 113-139 159-184 (259)
307 TIGR01829 AcAcCoA_reduct aceto 20.9 3.8E+02 0.0083 20.9 6.4 70 39-115 17-88 (242)
308 PRK07775 short chain dehydroge 20.8 4E+02 0.0087 21.8 6.6 70 39-115 27-97 (274)
309 TIGR00512 salvage_mtnA S-methy 20.6 1.7E+02 0.0037 25.8 4.4 22 107-128 149-173 (331)
310 cd04724 Tryptophan_synthase_al 20.5 4.3E+02 0.0094 21.7 6.7 73 40-116 123-196 (242)
311 cd07211 Pat_PNPLA8 Patatin-lik 20.4 1.4E+02 0.0031 25.3 3.9 49 95-144 25-75 (308)
312 PRK07878 molybdopterin biosynt 20.4 1.4E+02 0.003 26.7 3.9 28 104-133 342-369 (392)
313 PRK09134 short chain dehydroge 20.3 4.6E+02 0.0099 21.0 7.1 69 40-115 27-97 (258)
314 PRK12360 4-hydroxy-3-methylbut 20.0 5.2E+02 0.011 22.2 7.2 66 36-111 44-122 (281)
315 PRK07524 hypothetical protein; 20.0 6.7E+02 0.014 23.1 8.5 39 39-78 9-47 (535)
No 1
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=100.00 E-value=2e-45 Score=290.56 Aligned_cols=152 Identities=52% Similarity=0.922 Sum_probs=110.9
Q ss_pred eeCCCCccccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHH
Q 028894 15 LVPPPNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIM 94 (202)
Q Consensus 15 ~~pp~nf~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~ 94 (202)
++||.||+.|+++||||++|++.++++|+++|+||||+|++++++.+...|++++||+++|+++.....+++.++.+.+.
T Consensus 1 lvpP~nF~~V~~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~~~~~~~~f~~~~~I~l~~~~~~~~~~~~~~~~~~~v~ 80 (164)
T PF03162_consen 1 LVPPLNFGMVEPGVYRSAQPTPANFPFLERLGLKTIINLRPEPPSQDFLEFAEENGIKLIHIPMSSSKDPWVPISEEQVA 80 (164)
T ss_dssp B---TT-EEEETTEEEESS--HHHHHHHHHHT-SEEEE--SS---HHHHHHHHHTT-EEEE-------GGG----HHHHH
T ss_pred CcCCccccCCCCCccCCCCCChhhHHHHHHCCCceEEEecCCCCCHHHHHHHhhcCceEEEeccccccCccccCCHHHHH
Confidence 68999999999999999999999999999999999999999987777788999999999999998877666678899999
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhhCCCCCchHHHHHHhccccccc
Q 028894 95 EALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVMCLR 166 (202)
Q Consensus 95 ~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~~~~~~~~~~~fie~f~~~~~~ 166 (202)
++|++++++.++||||||.+|+||||+|+||||++|||+.++|++||++|++++.+..+++|||.||.+.+.
T Consensus 81 ~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~f~~~~~~~~~~~fIe~f~~~~~~ 152 (164)
T PF03162_consen 81 EALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRRFAGPKIRYLDEQFIELFDVELVV 152 (164)
T ss_dssp HHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHHHHGGG--HHHHHHHHT-------
T ss_pred HHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHHhcCCCCcHHHHHHHHhcCcceec
Confidence 999999999999999999999999999999999999999999999999999998899999999999998764
No 2
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=100.00 E-value=6.8e-40 Score=266.58 Aligned_cols=185 Identities=55% Similarity=0.980 Sum_probs=170.6
Q ss_pred CCCCceeeCCCCccccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCC----CC
Q 028894 9 NQSDGVLVPPPNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKT----EP 84 (202)
Q Consensus 9 ~~~~~~~~pp~nf~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~----~p 84 (202)
.+++..++||.||+.|+++||||++|.+.++.||+.+++|+||.|++|++++....|++.++|+++|+.+++.+ .|
T Consensus 48 ~~~~~~lipPlnFs~V~~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~yp~~nl~f~~~~~Ik~~~i~ie~~k~~~k~P 127 (249)
T KOG1572|consen 48 TTGEMVLIPPLNFSMVDNGLYRSGFPRPENFSFLKTLHLKSIISLCPEPYPEENLNFLESNGIKLYQIGIEGEKDNKKEP 127 (249)
T ss_pred CCCCceecCCccccccccceeecCCCCccchHHHHHhhhheEEEecCCCCChHHHHHHHhcCceEEEEecccccccccCC
Confidence 34455699999999999999999999999999999999999999999988887788999999999999999877 67
Q ss_pred CCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhhCCCCCchHHHHHHhccccc
Q 028894 85 PVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVMC 164 (202)
Q Consensus 85 ~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~~~~~~~~~~~fie~f~~~~ 164 (202)
+..+..+.|..+++.+++..|+|+|+||..|++|||++++|+|++++|++..|++||++|++++.+..+++|||.||...
T Consensus 128 ~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~fa~sk~r~~d~~Fie~fd~~~ 207 (249)
T KOG1572|consen 128 FVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLRFAGSKGRRVDLRFIEMFDTNP 207 (249)
T ss_pred CCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHHhccchhHHHHHHHHHHhcccc
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeeeeeeeecccchhhhhh-hhhhc
Q 028894 165 LRQCLYSIIYQYQGYGSKKRRLLY-REENL 193 (202)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 193 (202)
.+.....+.+.+.+++..+....+ ++++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~r~~~~~~s~~~~ 237 (249)
T KOG1572|consen 208 KKNVKLSIPCAYESPDEFRLQDALWSEEVV 237 (249)
T ss_pred cccccccccccccCCcHHHHHHHHhccccc
Confidence 999999999999998887776655 44443
No 3
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.89 E-value=2.5e-22 Score=153.43 Aligned_cols=127 Identities=19% Similarity=0.293 Sum_probs=99.1
Q ss_pred cccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 028894 22 SMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILI 101 (202)
Q Consensus 22 ~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~ 101 (202)
..|.++||+|++|++.++++|+++||++||||+.+.... ...|++|+++|+.|..... ..+.+.++++++.
T Consensus 2 ~~I~~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~~~~------~~~~~~~~~ipi~D~~~~~---~~~~~~~~~~~i~ 72 (138)
T smart00195 2 SEILPHLYLGSYSSALNLALLKKLGITHVINVTNEVPNL------NKKGFTYLGVPILDNTETK---ISPYFPEAVEFIE 72 (138)
T ss_pred cEEeCCeEECChhHcCCHHHHHHcCCCEEEEccCCCCCC------CCCCCEEEEEECCCCCCCC---hHHHHHHHHHHHH
Confidence 368899999999999999999999999999999874321 2478999999999853221 2345566666665
Q ss_pred h--CCCCcEEEEeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhhCCCCCchHHHHHHh
Q 028894 102 D--VRNHPVLIHCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFAGLKSRDTDLKFMET 159 (202)
Q Consensus 102 ~--~~~~pVlVHC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~~~~~~~~~~~fie~ 159 (202)
. ..++||||||.+|.+|||+++++|++ ..||+.++|++.++..+ +... .++.|++.
T Consensus 73 ~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~~~R-~~~~-p~~~~~~q 131 (138)
T smart00195 73 DAEKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVKDRR-PIIS-PNFGFLRQ 131 (138)
T ss_pred HHhcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHHHHC-CccC-CCHhHHHH
Confidence 3 36899999999999999999999988 58999999999887765 3332 24555543
No 4
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.88 E-value=5.3e-22 Score=152.20 Aligned_cols=118 Identities=16% Similarity=0.235 Sum_probs=96.9
Q ss_pred ccccccceeecCCCCCCChhHHhccCCcEEEEcCCC-CC---C--chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHH
Q 028894 21 FSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPE-PY---P--EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIM 94 (202)
Q Consensus 21 f~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e-~~---~--~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~ 94 (202)
+.+|++++|+|++|++.+++.|+++||++|||||++ +. + .....++...|++|+|+|+.... ++.+.+.
T Consensus 2 ~~~i~~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~-----~~~~~v~ 76 (135)
T TIGR01244 2 IRKLTEHLYVSPQLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD-----ITPDDVE 76 (135)
T ss_pred ceEcCCCeeEcCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC-----CCHHHHH
Confidence 457899999999999999999999999999999975 21 1 12235667889999999997543 4667776
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 028894 95 EALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFA 145 (202)
Q Consensus 95 ~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~ 145 (202)
.+.+.+ +..++|||+||++|+ |||++.++++..+||+.++|+++.+...
T Consensus 77 ~f~~~~-~~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~~~~G 125 (135)
T TIGR01244 77 TFRAAI-GAAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRAQAAG 125 (135)
T ss_pred HHHHHH-HhCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 665655 446799999999999 9999999999999999999999886643
No 5
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.88 E-value=8.9e-23 Score=160.99 Aligned_cols=122 Identities=24% Similarity=0.335 Sum_probs=77.3
Q ss_pred ccccccc-eeecCCCC---CCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCC-----------
Q 028894 21 FSMVEEG-IYRSSFPQ---SSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPP----------- 85 (202)
Q Consensus 21 f~~V~~~-Lyrs~~p~---~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~----------- 85 (202)
-..|.++ ||||+.|+ ++++..|+++||++|||||++.-..... -....|++++++|+.+.....
T Consensus 13 g~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~E~~~~p-~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~ 91 (164)
T PF13350_consen 13 GRRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPTERERAP-DPLIDGVQYVHIPIFGDDASSPDKLAELLQSS 91 (164)
T ss_dssp --TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HHHHHHHS-----TT-EEEE--SS-S-TTH----------H
T ss_pred eeeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCccccccCC-CCCcCCceeeeecccccccccccccccccccc
Confidence 3467777 99999997 4578999999999999999741000000 011249999999997654320
Q ss_pred --------------CCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 028894 86 --------------VSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144 (202)
Q Consensus 86 --------------~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~ 144 (202)
+.-..+.+.++|+.+.+.. +||||||++||||||+++|++|.+.|++.++|++||.+.
T Consensus 92 ~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV~~~~I~~DY~lS 163 (164)
T PF13350_consen 92 ADAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGVPDEDIIADYLLS 163 (164)
T ss_dssp HHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT--HHHHHHHHHGG
T ss_pred cchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 0112567888999998766 799999999999999999999999999999999999875
No 6
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.87 E-value=2e-21 Score=147.91 Aligned_cols=129 Identities=20% Similarity=0.275 Sum_probs=99.8
Q ss_pred ccccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHH
Q 028894 21 FSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKIL 100 (202)
Q Consensus 21 f~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i 100 (202)
..+|.++||+|++|...+.++|+++||++||||+++... ......|++|+|+|+.|...+. ....+..+++++
T Consensus 2 ~~~i~~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~~~----~~~~~~~~~~~~~~~~D~~~~~---~~~~~~~~~~~i 74 (139)
T cd00127 2 LSEITPGLYLGSYPAASDKELLKKLGITHVLNVAKEVPN----ENLFLSDFNYLYVPILDLPSQD---ISKYFDEAVDFI 74 (139)
T ss_pred cCEEcCCeEECChhHhcCHHHHHHcCCCEEEEcccCCCC----cccCCCCceEEEEEceeCCCCC---hHHHHHHHHHHH
Confidence 457899999999999999999999999999999986432 2334579999999998875331 234455555555
Q ss_pred Hh--CCCCcEEEEeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhhCCCCCchHHHHHH
Q 028894 101 ID--VRNHPVLIHCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFAGLKSRDTDLKFME 158 (202)
Q Consensus 101 ~~--~~~~pVlVHC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~~~~~~~~~~~fie 158 (202)
.. ..++||+|||.+|.+|||+++++|++ ..+|+.++|++..+.-+. ... .++.|.+
T Consensus 75 ~~~~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr~~r~-~~~-~~~~~~~ 133 (139)
T cd00127 75 DDAREKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVKSRRP-IIS-PNAGFMR 133 (139)
T ss_pred HHHHhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHHHHCC-ccC-CCHHHHH
Confidence 43 35789999999999999999998887 689999999998887653 232 3445544
No 7
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.84 E-value=1.2e-19 Score=143.66 Aligned_cols=137 Identities=19% Similarity=0.254 Sum_probs=107.6
Q ss_pred CCccccccceeecCCCCCC----ChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHH
Q 028894 19 PNFSMVEEGIYRSSFPQSS----NFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIM 94 (202)
Q Consensus 19 ~nf~~V~~~Lyrs~~p~~~----~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~ 94 (202)
....+|...|.-...|... +++.|+++||++||+++.+.++ .+.++..||.+.++|+.|...| +.+.+.
T Consensus 9 ~~~~~~~~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~~~---~~~~~~~gi~~~~~p~~D~~~P----~~~~i~ 81 (166)
T PTZ00242 9 RQIEYVLFKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPTYD---AELLEKNGIEVHDWPFDDGAPP----PKAVID 81 (166)
T ss_pred cceeeeceEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCCCC---HHHHHHCCCEEEecCCCCCCCC----CHHHHH
Confidence 3456778888888888874 4588999999999999865332 3467789999999999887655 455565
Q ss_pred HHHHHHHh------CCCCcEEEEeCCCCchHHHHHHHHHHH-cCCCHHHHHHHHHHhhCCCCCchHHHHHHhccc
Q 028894 95 EALKILID------VRNHPVLIHCKRGKHRTGCLVGCLRKL-QNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNV 162 (202)
Q Consensus 95 ~~l~~i~~------~~~~pVlVHC~~G~~RTG~vva~~l~~-~gws~~~a~~ey~~~~~~~~~~~~~~fie~f~~ 162 (202)
++++++.+ ..++||+|||.+|.+|||+++++||+. .||+.++|++.++..+.......+.+|++.|..
T Consensus 82 ~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R~~~i~~~Q~~~l~~~~~ 156 (166)
T PTZ00242 82 NWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKRKGAINQTQLQFLKKYKP 156 (166)
T ss_pred HHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence 66655543 248999999999999999999999986 459999999999888755445557788888874
No 8
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.82 E-value=5.8e-19 Score=145.82 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=104.9
Q ss_pred eeecCCCCCC----ChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-
Q 028894 28 IYRSSFPQSS----NFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILID- 102 (202)
Q Consensus 28 Lyrs~~p~~~----~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~- 102 (202)
|.--..|... .++.|++.||++||+++...++ .+.+++.||+++++|+.|...| +.+.+.++++++.+
T Consensus 94 fLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~~Yd---~~~~~~~GI~~~~lpipDg~aP----s~~~i~~~l~~i~~~ 166 (241)
T PTZ00393 94 ILILDAPTNDLLPLYIKEMKNYNVTDLVRTCERTYN---DGEITSAGINVHELIFPDGDAP----TVDIVSNWLTIVNNV 166 (241)
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCC---HHHHHHcCCeEEEeecCCCCCC----CHHHHHHHHHHHHHH
Confidence 4455667643 4588999999999999876543 3456789999999999998876 56677777777653
Q ss_pred -CCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhhCCCCCchHHHHHHhcccc
Q 028894 103 -VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVM 163 (202)
Q Consensus 103 -~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~~~~~~~~~~~fie~f~~~ 163 (202)
..+++|+|||.+|.||||+++|+||+..|++.++|++..+..+..-....+.+|++.|...
T Consensus 167 l~~g~~VaVHC~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPgAIn~~Q~~fL~~y~~~ 228 (241)
T PTZ00393 167 IKNNRAVAVHCVAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKGAINKRQLQFLKAYKKK 228 (241)
T ss_pred HhcCCeEEEECCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999999999998887544456788999988764
No 9
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.80 E-value=3.7e-19 Score=134.79 Aligned_cols=122 Identities=23% Similarity=0.403 Sum_probs=93.3
Q ss_pred eeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh--CCC
Q 028894 28 IYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILID--VRN 105 (202)
Q Consensus 28 Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~--~~~ 105 (202)
||.|+.|.+. ..+|+++||++|||++.+.... ......+++++++|+.|..... ..+.+..+.+++.+ .++
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~~~~---~~~~~~~~~~~~i~~~D~~~~~---~~~~~~~~~~~i~~~~~~~ 73 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEECPNP---YFYKPEGIEYLRIPIDDDPEEP---ILEHLDQAVEFIENAISEG 73 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSSSTS---HHHTTTTSEEEEEEEESSTTSH---GGGGHHHHHHHHHHHHHTT
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCCcCc---hhcccCCCEEEEEEecCCCCcc---hHHHHHHHHHhhhhhhccc
Confidence 6899999988 9999999999999999864322 3455679999999998843211 22344555555543 378
Q ss_pred CcEEEEeCCCCchHHHHHHHHHHH-cCCCHHHHHHHHHHhhCCCCCchHHHHHH
Q 028894 106 HPVLIHCKRGKHRTGCLVGCLRKL-QNWCLSSVFEEYRHFAGLKSRDTDLKFME 158 (202)
Q Consensus 106 ~pVlVHC~~G~~RTG~vva~~l~~-~gws~~~a~~ey~~~~~~~~~~~~~~fie 158 (202)
++|||||.+|.+|||+++++||+. .||+.++|++.++..+ +.+. .+..|++
T Consensus 74 ~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~~~r-p~~~-~~~~~~~ 125 (133)
T PF00782_consen 74 GKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVRSRR-PQIN-PNPSFIR 125 (133)
T ss_dssp SEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHHHHS-TTST-HHHHHHH
T ss_pred ceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHHHHC-CCCC-CCHHHHH
Confidence 999999999999999999999995 8999999999877766 4443 3444544
No 10
>PRK12361 hypothetical protein; Provisional
Probab=99.78 E-value=2.5e-18 Score=158.81 Aligned_cols=138 Identities=14% Similarity=0.262 Sum_probs=108.5
Q ss_pred CCccccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 028894 19 PNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALK 98 (202)
Q Consensus 19 ~nf~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~ 98 (202)
+.+..|.++||.|+.|.+.|++.|+++||++||||+.|..... ......+++|+++|+.|...| +.+++.++++
T Consensus 93 ~~~~~I~~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~~~~~--~~~~~~~i~yl~iPi~D~~~p----~~~~l~~a~~ 166 (547)
T PRK12361 93 PAIQKIDENLYLGCRLFPADLEKLKSNKITAILDVTAEFDGLD--WSLTEEDIDYLNIPILDHSVP----TLAQLNQAIN 166 (547)
T ss_pred CcceEEcCcEEECCCCCcccHHHHHHcCCCEEEEccccccccc--ccccccCceEEEeecCCCCCC----cHHHHHHHHH
Confidence 4678999999999999999999999999999999997532110 111236899999999997655 4578888888
Q ss_pred HHHhC--CCCcEEEEeCCCCchHHHHHHHHHHH--cCCCHHHHHHHHHHhhCC-CCCchHHHHHHhccc
Q 028894 99 ILIDV--RNHPVLIHCKRGKHRTGCLVGCLRKL--QNWCLSSVFEEYRHFAGL-KSRDTDLKFMETFNV 162 (202)
Q Consensus 99 ~i~~~--~~~pVlVHC~~G~~RTG~vva~~l~~--~gws~~~a~~ey~~~~~~-~~~~~~~~fie~f~~ 162 (202)
+|.+. ++++|||||.+|.+||++++++||+. .+|+.++|++..+.-+.. ..+..+.+.++.|..
T Consensus 167 ~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~~n~~q~~~l~~~~~ 235 (547)
T PRK12361 167 WIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTARLNKRQLRALEKMLE 235 (547)
T ss_pred HHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
Confidence 88753 57899999999999999999999995 479999999988777632 123345566666544
No 11
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.78 E-value=6e-19 Score=130.68 Aligned_cols=100 Identities=21% Similarity=0.400 Sum_probs=70.0
Q ss_pred ccccccceeecCCCCCCChhHHhccCCcEEEEcCCC-C-C--C--chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHH
Q 028894 21 FSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPE-P-Y--P--EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIM 94 (202)
Q Consensus 21 f~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e-~-~--~--~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~ 94 (202)
|..|++.++.|+||++++++.|++.|+|+|||||++ + + + ..+.+.+++.|++|+|+|+.... ++.+.+.
T Consensus 2 i~~i~~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~-----~~~~~v~ 76 (110)
T PF04273_consen 2 IRQISDDLSVSGQPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA-----ITEEDVE 76 (110)
T ss_dssp -EEEETTEEEECS--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT-------HHHHH
T ss_pred CEecCCCeEECCCCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC-----CCHHHHH
Confidence 567899999999999999999999999999999986 2 1 1 24667899999999999998653 4677887
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHH
Q 028894 95 EALKILIDVRNHPVLIHCKRGKHRTGCLVGCLR 127 (202)
Q Consensus 95 ~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l 127 (202)
.+.+.+. ...+|||+||..|. |++.+.++..
T Consensus 77 ~f~~~l~-~~~~Pvl~hC~sG~-Ra~~l~~l~~ 107 (110)
T PF04273_consen 77 AFADALE-SLPKPVLAHCRSGT-RASALWALAQ 107 (110)
T ss_dssp HHHHHHH-TTTTSEEEE-SCSH-HHHHHHHHHH
T ss_pred HHHHHHH-hCCCCEEEECCCCh-hHHHHHHHHh
Confidence 7666664 46789999999997 9988887764
No 12
>PLN02727 NAD kinase
Probab=99.75 E-value=4.6e-18 Score=160.87 Aligned_cols=99 Identities=17% Similarity=0.329 Sum_probs=86.2
Q ss_pred ceeecCCCCCCChhHHhccCCcEEEEcCCCCC-----CchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHH
Q 028894 27 GIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPY-----PEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILI 101 (202)
Q Consensus 27 ~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~-----~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~ 101 (202)
.+|||+||++++++.|.+.|+|||||||++.. ...+.+.+++.|++|+|+|+.+...| +.+++.++.+++.
T Consensus 262 ~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPVs~~~ap----t~EqVe~fa~~l~ 337 (986)
T PLN02727 262 AFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPVEVRTAP----SAEQVEKFASLVS 337 (986)
T ss_pred eEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeecCCCCCC----CHHHHHHHHHHHH
Confidence 58999999999999999999999999998632 12467788999999999999776544 6889998888885
Q ss_pred hCCCCcEEEEeCCCCchHHHHHHHHHHH
Q 028894 102 DVRNHPVLIHCKRGKHRTGCLVGCLRKL 129 (202)
Q Consensus 102 ~~~~~pVlVHC~~G~~RTG~vva~~l~~ 129 (202)
+..++|||+||++|.+|||+++||||..
T Consensus 338 ~slpkPVLvHCKSGarRAGamvA~yl~~ 365 (986)
T PLN02727 338 DSSKKPIYLHSKEGVWRTSAMVSRWKQY 365 (986)
T ss_pred hhcCCCEEEECCCCCchHHHHHHHHHHH
Confidence 6679999999999999999999999983
No 13
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.73 E-value=1.1e-17 Score=140.49 Aligned_cols=130 Identities=28% Similarity=0.351 Sum_probs=94.1
Q ss_pred eCCCCccccccceeecCCCCCCChh--HHhccCCcEEEEcCCC-CCC-----chhHhHhhhCCcEEEEeecCCCCCCCCC
Q 028894 16 VPPPNFSMVEEGIYRSSFPQSSNFP--FLQTLNLRSIIYLCPE-PYP-----EENLKFLAAQNIRLFHFGIEGKTEPPVS 87 (202)
Q Consensus 16 ~pp~nf~~V~~~Lyrs~~p~~~~~~--~L~~~giktVI~L~~e-~~~-----~~~~~~~~~~gI~~~~ipi~d~~~p~~~ 87 (202)
.|...+.++...+|||++|.+.+.. ++..++++++|+|+.+ ... .....+....++.....+.. ++..
T Consensus 43 ~~~~~~~i~~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 118 (249)
T COG2365 43 APLNFLGIIPIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYTDHLINWDKAAIIMFESYRSF----PTRE 118 (249)
T ss_pred cccccccccceeEcCCCCcccccCCccccccccccccccccccchhhhhhhhhhhhhhccccchhhhhhccC----ccch
Confidence 3333444555559999999988776 7889999999999962 111 11111122233332222222 2222
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhhCCCC
Q 028894 88 IPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKS 149 (202)
Q Consensus 88 ~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~~~~~ 149 (202)
...+.+.+.+++++++.++|||+||++|+||||+++||||++.||+..++.+||+.++.+..
T Consensus 119 ~~~e~~~~~~~l~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~ 180 (249)
T COG2365 119 DAAERLVELLQLLADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGE 180 (249)
T ss_pred hhHHHHHHHHHHHhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccc
Confidence 46788999999998877899999999999999999999999999999999999999986643
No 14
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=99.72 E-value=1.3e-16 Score=128.41 Aligned_cols=127 Identities=19% Similarity=0.264 Sum_probs=101.0
Q ss_pred CceeeCCCCccccccc-eeecCCCCC---------------CChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEE
Q 028894 12 DGVLVPPPNFSMVEEG-IYRSSFPQS---------------SNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFH 75 (202)
Q Consensus 12 ~~~~~pp~nf~~V~~~-Lyrs~~p~~---------------~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ 75 (202)
.=+-++..+|.||.|+ +.+=+.|.. .-+..++..++++|+.|....++ .+-+...||.+++
T Consensus 44 ~ye~ve~gdfnwI~p~~~i~f~~p~~~s~gi~~~f~~~~~~~~~~~~~~~~v~s~vrln~~~yd---~~~f~~~Gi~h~~ 120 (225)
T KOG1720|consen 44 HYEAVENGDFNWIIPDRFIAFAGPHLKSRGIESGFPLHLPQPYIQYFKNNNVTSIVRLNKRLYD---AKRFTDAGIDHHD 120 (225)
T ss_pred eeeccCCCCcceeccchhhhhcCccccccchhhcccccCChhHHHHhhhcccceEEEcCCCCCC---hHHhcccCceeee
Confidence 3466889999999998 333233321 12355778899999999876553 3446678999999
Q ss_pred eecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhh
Q 028894 76 FGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFA 145 (202)
Q Consensus 76 ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~ 145 (202)
+|+.|...| +.+.+.++++.+... +++.|.|||++|.||||+++|||++ ..|++.+++++..|.-+
T Consensus 121 l~f~Dg~tP----~~~~v~~fv~i~e~~~~~g~iaVHCkaGlGRTG~liAc~lmy~~g~ta~eaI~~lR~~R 188 (225)
T KOG1720|consen 121 LFFADGSTP----TDAIVKEFVKIVENAEKGGKIAVHCKAGLGRTGTLIACYLMYEYGMTAGEAIAWLRICR 188 (225)
T ss_pred eecCCCCCC----CHHHHHHHHHHHHHHHhcCeEEEEeccCCCchhHHHHHHHHHHhCCCHHHHHHHHHhcC
Confidence 999999877 678888888887653 4799999999999999999999999 68999999999888776
No 15
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.67 E-value=1.1e-15 Score=112.92 Aligned_cols=113 Identities=18% Similarity=0.193 Sum_probs=93.5
Q ss_pred ccccccceeecCCCCCCChhHHhccCCcEEEEcCCC--CC----CchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHH
Q 028894 21 FSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPE--PY----PEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIM 94 (202)
Q Consensus 21 f~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e--~~----~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~ 94 (202)
+..|++.|+.|+||+.+|++.++.+|+|+|||.||+ ++ ...+.+++++.|+.|.|+|+.... +..+.|.
T Consensus 3 i~~I~d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~y~~iPV~~~~-----iT~~dV~ 77 (130)
T COG3453 3 IRRINDRLSVSGQISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLTYTHIPVTGGG-----ITEADVE 77 (130)
T ss_pred ceecccceeecCCCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCceEEeecCCCC-----CCHHHHH
Confidence 567889999999999999999999999999999995 22 146788899999999999997654 5677776
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHH
Q 028894 95 EALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEE 140 (202)
Q Consensus 95 ~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~e 140 (202)
.+-+.+ +...+|||.||..|. |+-++-++-....|++.+++.+.
T Consensus 78 ~f~~Al-~eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a~ 121 (130)
T COG3453 78 AFQRAL-DEAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEAL 121 (130)
T ss_pred HHHHHH-HHhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHHH
Confidence 555544 458899999999996 88777777777789999988763
No 16
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.65 E-value=8.2e-16 Score=120.61 Aligned_cols=118 Identities=18% Similarity=0.252 Sum_probs=68.7
Q ss_pred CCCCcccccc-------ceeecCCCC----------CCChhHHhccCCcEEEEcCCC-C---CC-chhHhHhhhCCcEEE
Q 028894 17 PPPNFSMVEE-------GIYRSSFPQ----------SSNFPFLQTLNLRSIIYLCPE-P---YP-EENLKFLAAQNIRLF 74 (202)
Q Consensus 17 pp~nf~~V~~-------~Lyrs~~p~----------~~~~~~L~~~giktVI~L~~e-~---~~-~~~~~~~~~~gI~~~ 74 (202)
-|.+.+|+.. .|..+..|. ..|++.|++.|++.||+|... + +. +.+.+.+++.||.|+
T Consensus 25 ~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~Vp~L~~~~~~~Gi~~~ 104 (168)
T PF05706_consen 25 TPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLGVPDLGEAAQARGIAWH 104 (168)
T ss_dssp S----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-TTHHHHHHHTT-EEE
T ss_pred CceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcCCccHHHHHHHcCCEEE
Confidence 3667777643 266666775 346788999999999999874 1 11 357788899999999
Q ss_pred EeecCCCCCCCCCCCHHHHHHHHHHHHh--CCCCcEEEEeCCCCchHHHHHHHHHHHcC--CCHHHHH
Q 028894 75 HFGIEGKTEPPVSIPKDTIMEALKILID--VRNHPVLIHCKRGKHRTGCLVGCLRKLQN--WCLSSVF 138 (202)
Q Consensus 75 ~ipi~d~~~p~~~~~~~~i~~~l~~i~~--~~~~pVlVHC~~G~~RTG~vva~~l~~~g--ws~~~a~ 138 (202)
|+||.|...|. .+.+.+.+..+.. .++..|+|||.+|.||||+++||+|...| .+.++|+
T Consensus 105 h~PI~D~~aPd----~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 105 HLPIPDGSAPD----FAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp E----TTS-------HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred ecCccCCCCCC----HHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999998762 3333333333322 26889999999999999999999998755 5666664
No 17
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.61 E-value=9.8e-15 Score=112.56 Aligned_cols=123 Identities=18% Similarity=0.319 Sum_probs=96.1
Q ss_pred CccccccceeecCCCC-CCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 028894 20 NFSMVEEGIYRSSFPQ-SSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALK 98 (202)
Q Consensus 20 nf~~V~~~Lyrs~~p~-~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~ 98 (202)
|++.+++-...|..|. ..+.+.++.+|++.||++..+..........+..||+++.+|..|.... .+.+.+.++++
T Consensus 24 ~wy~~~~~v~~~~~~FrS~~~~~i~ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~---Ps~~~i~~aVe 100 (183)
T KOG1719|consen 24 RWYRIDEFVILGAMPFRSMDVPLIKKENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGA---PSLENIQKAVE 100 (183)
T ss_pred ceeeecceEEEeecccccccchHHHhcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCC---CCHHHHHHHHH
Confidence 4445555555666665 3578999999999999999752111122245778999999999887532 26788999999
Q ss_pred HHHhC--CCCcEEEEeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhh
Q 028894 99 ILIDV--RNHPVLIHCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFA 145 (202)
Q Consensus 99 ~i~~~--~~~pVlVHC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~ 145 (202)
+|... .++.|+|||++|.+|+.++++|||+ ..+|+.++|++-.+..+
T Consensus 101 Fi~k~asLGktvYVHCKAGRtRSaTvV~cYLmq~~~wtpe~A~~~vr~iR 150 (183)
T KOG1719|consen 101 FIHKNASLGKTVYVHCKAGRTRSATVVACYLMQHKNWTPEAAVEHVRKIR 150 (183)
T ss_pred HHHhccccCCeEEEEecCCCccchhhhhhhhhhhcCCCHHHHHHHHHhcC
Confidence 99763 5788999999999999999999999 69999999999777665
No 18
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.60 E-value=5.7e-15 Score=122.80 Aligned_cols=129 Identities=16% Similarity=0.255 Sum_probs=101.2
Q ss_pred ccCCCCceeeCCCCcc-ccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCC
Q 028894 7 GDNQSDGVLVPPPNFS-MVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPP 85 (202)
Q Consensus 7 ~~~~~~~~~~pp~nf~-~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~ 85 (202)
+.+++| .+.+.|- +|.|.||.|+.-+..+++.|+++||++|||+++..+.. |-+...+.|..||+.|+....
T Consensus 160 ~~ds~G---~~ra~FPV~ilp~LYLg~a~ds~NldvLkk~gI~yviNVTpnlpn~----fe~~g~f~YkqipisDh~Sqn 232 (343)
T KOG1717|consen 160 PEDSDG---PQRASFPVEILPNLYLGCAKDSTNLDVLKKYGIKYVINVTPNLPNN----FENNGEFIYKQIPISDHASQN 232 (343)
T ss_pred cccccC---CcccCcchhhccchhcccccccccHHHHHhcCceEEEecCCCCcch----hhcCCceeEEeeeccchhhhh
Confidence 344455 2344555 78999999999999999999999999999999875431 112245899999999986432
Q ss_pred CCCCHHHHHHHHHHHHhC--CCCcEEEEeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhh
Q 028894 86 VSIPKDTIMEALKILIDV--RNHPVLIHCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFA 145 (202)
Q Consensus 86 ~~~~~~~i~~~l~~i~~~--~~~pVlVHC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~ 145 (202)
-...+.+++.+|.++ ++-.|||||-+|.+|+-+|+.+||| ....++.+|++-..+-.
T Consensus 233 ---ls~ffpEAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAyd~Vk~kk 292 (343)
T KOG1717|consen 233 ---LSQFFPEAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAYDFVKHKK 292 (343)
T ss_pred ---hhhhhHHHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHHHHHHHhc
Confidence 124567888888774 5778999999999999999999999 68999999998776554
No 19
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.56 E-value=3.5e-14 Score=121.48 Aligned_cols=134 Identities=18% Similarity=0.304 Sum_probs=103.5
Q ss_pred CCccccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHH
Q 028894 19 PNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALK 98 (202)
Q Consensus 19 ~nf~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~ 98 (202)
.+...|.|+||.|+.+.+.+.+.|+++||++|+|+....+... +....+++|.++|+.|+... .+. ..+.++++
T Consensus 73 ~~~~~i~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~~~~~---~~~~~~~~y~~i~~~D~~~~--~i~-~~~~~~~~ 146 (285)
T KOG1716|consen 73 NPIVEILPNLYLGSQGVASDPDLLKKLGITHVLNVSSSCPNPR---FLKEQGIKYLRIPVEDNPST--DIL-QHFPEAIS 146 (285)
T ss_pred CCceeecCCceecCcccccchhhHHHcCCCEEEEecccCCccc---cccccCceEEeccccCCccc--cHH-HHHHHHHH
Confidence 6788999999999999999999999999999999997643211 23334899999999986532 232 24555666
Q ss_pred HHHh--CCCCcEEEEeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhhCCCCCchHHHHHHhc
Q 028894 99 ILID--VRNHPVLIHCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFAGLKSRDTDLKFMETF 160 (202)
Q Consensus 99 ~i~~--~~~~pVlVHC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~~~~~~~~~~~fie~f 160 (202)
+|.. ..++.|||||.+|.+||.+++.+|++ ..||++++|++.+..-+.. ... |..|+.+.
T Consensus 147 fI~~a~~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~-i~P-N~gf~~QL 209 (285)
T KOG1716|consen 147 FIEKAREKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPI-ISP-NFGFLRQL 209 (285)
T ss_pred HHHHHHhCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCc-cCC-CHHHHHHH
Confidence 6654 36899999999999999999999998 6999999999988776532 222 66666433
No 20
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=99.55 E-value=8.2e-14 Score=108.88 Aligned_cols=124 Identities=15% Similarity=0.212 Sum_probs=93.8
Q ss_pred CCCCccccccceeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCC--CHHHHH
Q 028894 17 PPPNFSMVEEGIYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSI--PKDTIM 94 (202)
Q Consensus 17 pp~nf~~V~~~Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~--~~~~i~ 94 (202)
+...+++|+++||.|..-.+.+-..|++.||+.|||.+.|.+.... .+++|..+|+.|.... ++ ..+.+.
T Consensus 13 ~~~~~SqIt~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~pn~~l------~~~qy~kv~~~D~p~~--~l~~hfD~vA 84 (198)
T KOG1718|consen 13 SIGGMSQITPSLFLSNGVAANDKLLLKKRKITCIINATTEVPNTSL------PDIQYMKVPLEDTPQA--RLYDHFDPVA 84 (198)
T ss_pred CccchhhcCcceeEeccccccCHHHHHhcCceEEEEcccCCCCccC------CCceeEEEEcccCCcc--hhhhhhhHHH
Confidence 3456889999999997777778888999999999999998665333 5899999999987431 22 123344
Q ss_pred HHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhhCCCCC
Q 028894 95 EALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFAGLKSR 150 (202)
Q Consensus 95 ~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~~~~~~ 150 (202)
+-++-+. .++|.+||||.+|.+|+..++.+||+ ..++++-+|..-.. ..+|.+|
T Consensus 85 D~I~~v~-~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreAy~~vK-a~RpiIR 139 (198)
T KOG1718|consen 85 DKIHSVI-MRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREAYHWVK-ARRPIIR 139 (198)
T ss_pred HHHHHHH-hcCCcEEEEEccccchhHHHHHHHHHHHccchHHHHHHHHH-hhCceeC
Confidence 4444442 37899999999999999999999887 79999999987443 3444443
No 21
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=99.46 E-value=9.7e-13 Score=99.45 Aligned_cols=129 Identities=16% Similarity=0.264 Sum_probs=103.1
Q ss_pred eeecCCCCCCC----hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh-
Q 028894 28 IYRSSFPQSSN----FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILID- 102 (202)
Q Consensus 28 Lyrs~~p~~~~----~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~- 102 (202)
+.....|+... ++.|+.+|++|||-++...++ ...++..||..+..|++|...| +.+.+.+.++++.-
T Consensus 19 FLIThnPtnaTln~fieELkKygvttvVRVCe~TYd---t~~lek~GI~Vldw~f~dg~pp----p~qvv~~w~~l~~~~ 91 (173)
T KOG2836|consen 19 FLITHNPTNATLNKFIEELKKYGVTTVVRVCEPTYD---TTPLEKEGITVLDWPFDDGAPP----PNQVVDDWLSLVKTK 91 (173)
T ss_pred EEEecCCCchhHHHHHHHHHhcCCeEEEEecccccC---CchhhhcCceEeecccccCCCC----chHHHHHHHHHHHHH
Confidence 34455666543 467899999999999976554 3346779999999999998765 45666777776653
Q ss_pred ---CCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhhCCCCCchHHHHHHhcccc
Q 028894 103 ---VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVM 163 (202)
Q Consensus 103 ---~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~~~~~~~~~~~fie~f~~~ 163 (202)
..+.-|.|||.+|.||+.+++|+-|+..|+..++|++-.|.-++...+..+..|+|.+.+.
T Consensus 92 f~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave~ir~krrga~n~kql~~lekyrpk 155 (173)
T KOG2836|consen 92 FREEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVEMIRQKRRGAINSKQLLYLEKYRPK 155 (173)
T ss_pred HhhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHHHHHHHhhccccHHHHHHHHHhCcc
Confidence 2455699999999999999999999999999999999888877665677788999999875
No 22
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.33 E-value=1.6e-11 Score=98.44 Aligned_cols=78 Identities=17% Similarity=0.294 Sum_probs=61.2
Q ss_pred HhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC--CCCcEEEEeCCCCchHHHHHHHHHHH--cCCCHHHHHHH
Q 028894 65 FLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV--RNHPVLIHCKRGKHRTGCLVGCLRKL--QNWCLSSVFEE 140 (202)
Q Consensus 65 ~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~--~~~pVlVHC~~G~~RTG~vva~~l~~--~gws~~~a~~e 140 (202)
.....|+.++++|+.|...| +..++.+++++|.+. .++.|+|||.+|.+|||+++|+|++. .++..++++..
T Consensus 67 ~~~~~~~~~~~~~~~D~~~p----~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~ 142 (180)
T COG2453 67 IEENDGIQVLHLPILDGTVP----DLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAV 142 (180)
T ss_pred eeccCCceeeeeeecCCCCC----cHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34557999999999999876 346777777777653 56699999999999999999999885 46777777776
Q ss_pred HHHhhC
Q 028894 141 YRHFAG 146 (202)
Q Consensus 141 y~~~~~ 146 (202)
.++-+.
T Consensus 143 ~~~~r~ 148 (180)
T COG2453 143 KRRRRP 148 (180)
T ss_pred HHhcCC
Confidence 665543
No 23
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.92 E-value=4.8e-09 Score=75.09 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=49.8
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-----CCCcEEEEeCCCCchHHHHHHHHHHHcC-------CCHHHHHHH
Q 028894 73 LFHFGIEGKTEPPVSIPKDTIMEALKILIDV-----RNHPVLIHCKRGKHRTGCLVGCLRKLQN-------WCLSSVFEE 140 (202)
Q Consensus 73 ~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-----~~~pVlVHC~~G~~RTG~vva~~l~~~g-------ws~~~a~~e 140 (202)
+.+.++.|...|. ..+.+.++++.+.+. .++||+|||.+|.+|||+++++++...+ .+..+++..
T Consensus 5 ~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00404 5 YHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred EeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3444555554442 335666777766542 2689999999999999999999887532 466688887
Q ss_pred HHHhhCC
Q 028894 141 YRHFAGL 147 (202)
Q Consensus 141 y~~~~~~ 147 (202)
++..+..
T Consensus 82 ir~~r~~ 88 (105)
T smart00404 82 LRKQRPG 88 (105)
T ss_pred HHhhhhh
Confidence 7766543
No 24
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.92 E-value=4.8e-09 Score=75.09 Aligned_cols=72 Identities=26% Similarity=0.327 Sum_probs=49.8
Q ss_pred EEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-----CCCcEEEEeCCCCchHHHHHHHHHHHcC-------CCHHHHHHH
Q 028894 73 LFHFGIEGKTEPPVSIPKDTIMEALKILIDV-----RNHPVLIHCKRGKHRTGCLVGCLRKLQN-------WCLSSVFEE 140 (202)
Q Consensus 73 ~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-----~~~pVlVHC~~G~~RTG~vva~~l~~~g-------ws~~~a~~e 140 (202)
+.+.++.|...|. ..+.+.++++.+.+. .++||+|||.+|.+|||+++++++...+ .+..+++..
T Consensus 5 ~~~~~Wpd~~~P~---~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00012 5 YHYTGWPDHGVPE---SPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred EeeCCCCCCCCCC---CHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3444555554442 335666777766542 2689999999999999999999887532 466688887
Q ss_pred HHHhhCC
Q 028894 141 YRHFAGL 147 (202)
Q Consensus 141 y~~~~~~ 147 (202)
++..+..
T Consensus 82 ir~~r~~ 88 (105)
T smart00012 82 LRKQRPG 88 (105)
T ss_pred HHhhhhh
Confidence 7766543
No 25
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.85 E-value=1.1e-08 Score=79.61 Aligned_cols=65 Identities=14% Similarity=0.352 Sum_probs=49.1
Q ss_pred hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCCCchHHHHHHHHHHH
Q 028894 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRGKHRTGCLVGCLRKL 129 (202)
Q Consensus 61 ~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G~~RTG~vva~~l~~ 129 (202)
.....++..|+.|+++|+.|...| .++.+.++++++.+. .+..+.|||.+|+|||.+..+++.++
T Consensus 83 ~e~~~~~~~g~~Y~Ripitd~~~P----~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 83 TEEELVEGNGLRYYRIPITDHQAP----DPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp -HHHHHHHTT-EEEEEEE-TTS-------HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeCCCcCCC----CHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 346678889999999999998766 678999999999874 56779999999999999888887653
No 26
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=98.60 E-value=2e-07 Score=76.92 Aligned_cols=58 Identities=21% Similarity=0.320 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhC----CCCcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCC
Q 028894 90 KDTIMEALKILIDV----RNHPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGL 147 (202)
Q Consensus 90 ~~~i~~~l~~i~~~----~~~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~ 147 (202)
.+.+.++++.+... .++||+|||.+|.+|||+++|+++.+ ...+..+++...|..+..
T Consensus 147 ~~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~ 214 (231)
T cd00047 147 PDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPG 214 (231)
T ss_pred hHHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 35666777776653 37899999999999999999987653 258999999999887753
No 27
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=98.49 E-value=8.6e-07 Score=80.54 Aligned_cols=54 Identities=22% Similarity=0.325 Sum_probs=42.0
Q ss_pred EEEEeCCCCchHHHHHHHHHHH--cCCCHHHHHHHHHHhhCCCCCchHHHHHHhcc
Q 028894 108 VLIHCKRGKHRTGCLVGCLRKL--QNWCLSSVFEEYRHFAGLKSRDTDLKFMETFN 161 (202)
Q Consensus 108 VlVHC~~G~~RTG~vva~~l~~--~gws~~~a~~ey~~~~~~~~~~~~~~fie~f~ 161 (202)
.+|||++|.||||+++|++.+. .-.+.++++.++|..+..+..+..++|....+
T Consensus 469 PVVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~ 524 (535)
T PRK15375 469 PMIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKA 524 (535)
T ss_pred ceEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhcCCccccccHHHHHHHHH
Confidence 3699999999999999998863 24689999999999987645455566655443
No 28
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=98.47 E-value=9.1e-07 Score=74.24 Aligned_cols=58 Identities=19% Similarity=0.350 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhC---CCCcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCC
Q 028894 90 KDTIMEALKILIDV---RNHPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGL 147 (202)
Q Consensus 90 ~~~i~~~l~~i~~~---~~~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~ 147 (202)
.+.+.++++.+... .++||+|||.+|.||||+++|++..+ ..++..+++...|..+..
T Consensus 175 ~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 241 (258)
T smart00194 175 PKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPG 241 (258)
T ss_pred HHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcccc
Confidence 45666777766543 16899999999999999999997653 368999999999887754
No 29
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=98.27 E-value=1.4e-06 Score=78.51 Aligned_cols=134 Identities=21% Similarity=0.388 Sum_probs=86.6
Q ss_pred CccccccceeecCCCCCC-------C----hhHHhcc--CCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCC
Q 028894 20 NFSMVEEGIYRSSFPQSS-------N----FPFLQTL--NLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPV 86 (202)
Q Consensus 20 nf~~V~~~Lyrs~~p~~~-------~----~~~L~~~--giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~ 86 (202)
-+.-|+++|..++.|... + ..+|... |==.|.||+.|..++. ..| +| +...+|++|...|+
T Consensus 14 DltYIT~rIIamsfPa~~~es~yRN~l~dV~~fL~s~H~~~y~vyNL~~er~yd~-~~f---~g-~V~~~~~~Dh~~P~- 87 (434)
T KOG2283|consen 14 DLTYITSRIIAMSFPAEGIESLYRNNLEDVVLFLDSKHKDHYKVYNLSSERLYDP-SRF---HG-RVARFGFDDHNPPP- 87 (434)
T ss_pred cceeeeeeEEEEeCCCCcchhhhcCCHHHHHHHHhhccCCceEEEecCccccCCc-ccc---cc-ceeecCCCCCCCCc-
Confidence 345677888888888742 1 3445432 4445899997533221 111 22 55668999988773
Q ss_pred CCCHHHHHHHHH----HHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCC--CHHHHHHHHHHhh---C---CCCCchHH
Q 028894 87 SIPKDTIMEALK----ILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNW--CLSSVFEEYRHFA---G---LKSRDTDL 154 (202)
Q Consensus 87 ~~~~~~i~~~l~----~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gw--s~~~a~~ey~~~~---~---~~~~~~~~ 154 (202)
.+.+..+.+ ++......-|.|||++|++|||+++.+|++..|. +.++|++-|..-+ . +.....+.
T Consensus 88 ---L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR~~~~~~~~~~~PSq~ 164 (434)
T KOG2283|consen 88 ---LELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGISATAEEALDYFNEKRFDEGKSKGVTIPSQR 164 (434)
T ss_pred ---HHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhhccccccCCccCchhh
Confidence 333333322 2222345678999999999999999999997665 4788888776544 2 22345778
Q ss_pred HHHHhccc
Q 028894 155 KFMETFNV 162 (202)
Q Consensus 155 ~fie~f~~ 162 (202)
+|+..|.-
T Consensus 165 RYv~Y~~~ 172 (434)
T KOG2283|consen 165 RYVGYFSR 172 (434)
T ss_pred HHHHHHHH
Confidence 99988875
No 30
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=98.19 E-value=1.6e-05 Score=68.65 Aligned_cols=44 Identities=11% Similarity=0.096 Sum_probs=35.1
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCCC
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGLK 148 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~~ 148 (202)
.+||+|||++|.||||+++|+-..+ .-.+..+++...|.-+..-
T Consensus 221 ~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~ 270 (298)
T PHA02740 221 IAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGC 270 (298)
T ss_pred CCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccc
Confidence 5799999999999999999874432 4568888888888876543
No 31
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=98.18 E-value=1.2e-05 Score=69.52 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=34.1
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCC
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGL 147 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~ 147 (202)
.+||+|||.+|.||||+++|+-..+ .-.+..+++...|..+..
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~ 277 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHN 277 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhccc
Confidence 4799999999999999999975442 345777888888877644
No 32
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=98.09 E-value=6.7e-06 Score=72.85 Aligned_cols=108 Identities=18% Similarity=0.286 Sum_probs=72.5
Q ss_pred ChhHHhcc--CCcEEEEcCCC-CCCchhHhHhhhCCcEEEEeecCCCCC-CCCCCCHHHHHHHHHHHHh-C--CCCcEEE
Q 028894 38 NFPFLQTL--NLRSIIYLCPE-PYPEENLKFLAAQNIRLFHFGIEGKTE-PPVSIPKDTIMEALKILID-V--RNHPVLI 110 (202)
Q Consensus 38 ~~~~L~~~--giktVI~L~~e-~~~~~~~~~~~~~gI~~~~ipi~d~~~-p~~~~~~~~i~~~l~~i~~-~--~~~pVlV 110 (202)
.+..|+.+ .+.-+|||... .+. ...-.+.+|+.|+.+...+... |. ....+.+...++-..+ . .+.=|+|
T Consensus 53 l~~~l~~~~~~vgl~iDltnt~ryy--~~~~~~~~g~~Y~K~~c~g~~~vp~-~~~v~~fv~~v~~f~~~~~~~~~LI~v 129 (393)
T KOG2386|consen 53 LFELLKEHNYKVGLKIDLTNTLRYY--DKPELEERGVKYLKRNCPGRGVVPR-TELVDKFVKLVKGFVDDTKLDDELIGV 129 (393)
T ss_pred HHHHHHhcCceEEEEEeccceeeee--ccccccccceeEEEeccCCcccCCC-ccchHHHHHHHHHHHhcccCCCCEEEE
Confidence 35556654 57789999764 232 2233556899999998876652 21 1122332233333322 1 3455999
Q ss_pred EeCCCCchHHHHHHHHHH-HcCCCHHHHHHHHHHhhCCC
Q 028894 111 HCKRGKHRTGCLVGCLRK-LQNWCLSSVFEEYRHFAGLK 148 (202)
Q Consensus 111 HC~~G~~RTG~vva~~l~-~~gws~~~a~~ey~~~~~~~ 148 (202)
||++|..|||-++.+||+ ..+|+..+|++.+...+.+.
T Consensus 130 hcthG~NrtgyLI~~yL~~~~~~s~~~aik~f~~~r~~g 168 (393)
T KOG2386|consen 130 HCTHGLNRTGYLICAYLADVGGYSSSEAIKRFADARPPG 168 (393)
T ss_pred eCCCcccccceeeeeeeeeccCccHHHHHHHHHHhCCCc
Confidence 999999999998888888 57899999999999888654
No 33
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=98.07 E-value=2.4e-05 Score=67.96 Aligned_cols=42 Identities=26% Similarity=0.479 Sum_probs=33.8
Q ss_pred CcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCC
Q 028894 106 HPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGL 147 (202)
Q Consensus 106 ~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~ 147 (202)
+||+|||++|.||||+++|+-..+ .-.+..+++...|+.+..
T Consensus 230 ~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~ 277 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHA 277 (312)
T ss_pred CCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 799999999999999999985432 456788888888877644
No 34
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=98.06 E-value=2.5e-05 Score=68.18 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=34.5
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCC
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGL 147 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~ 147 (202)
.+||+|||.+|.||||+++|+-..+ ...+..+++...|..+..
T Consensus 247 ~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~ 295 (323)
T PHA02746 247 LGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHS 295 (323)
T ss_pred CCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccc
Confidence 3799999999999999999974332 457888888888887654
No 35
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.04 E-value=4e-06 Score=70.37 Aligned_cols=39 Identities=28% Similarity=0.525 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHhC--CCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 90 KDTIMEALKILIDV--RNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 90 ~~~i~~~l~~i~~~--~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
-..+.+.++-+.+. ..+|++|||.||.||||+++|+--+
T Consensus 201 i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~l 241 (302)
T COG5599 201 IRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDIL 241 (302)
T ss_pred HHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHH
Confidence 34556666666643 6799999999999999999997433
No 36
>PHA02738 hypothetical protein; Provisional
Probab=97.95 E-value=5.4e-05 Score=65.93 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=34.7
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCCC
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGLK 148 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~~ 148 (202)
.+||+|||.+|.||||+++|+-..+ .-.+..+++...|.-+..-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~ 276 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYS 276 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhc
Confidence 4699999999999999998875432 4568888888888876543
No 37
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=97.90 E-value=3.4e-05 Score=62.85 Aligned_cols=58 Identities=14% Similarity=0.285 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHh---CCCCcEEEEeCCCCchHHHHHHHHHHH------cCCCHHHHHHHHHHhhCC
Q 028894 90 KDTIMEALKILID---VRNHPVLIHCKRGKHRTGCLVGCLRKL------QNWCLSSVFEEYRHFAGL 147 (202)
Q Consensus 90 ~~~i~~~l~~i~~---~~~~pVlVHC~~G~~RTG~vva~~l~~------~gws~~~a~~ey~~~~~~ 147 (202)
.+.+.++++.+.. ..++|++|||.+|.+|||+++++.... ...+..+++...|..+..
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~ 218 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPG 218 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTT
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCC
Confidence 4555566666554 257999999999999999999987763 357889999998887644
No 38
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.76 E-value=0.00049 Score=53.51 Aligned_cols=118 Identities=13% Similarity=0.143 Sum_probs=70.5
Q ss_pred hHHhccCCcEEEEcCCCC--CCchhHhHhhhCCcEEEEeecCCCCC---CCCCCCHHHHHHHHHHHHhC-CCCcEEEEeC
Q 028894 40 PFLQTLNLRSIIYLCPEP--YPEENLKFLAAQNIRLFHFGIEGKTE---PPVSIPKDTIMEALKILIDV-RNHPVLIHCK 113 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~--~~~~~~~~~~~~gI~~~~ipi~d~~~---p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~ 113 (202)
++..+.|-+..|+|.... .... ..... -+++.+-+.|-.. ++.-..+..+...++++... ...|++|||.
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~~~p-a~~~~---erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~ 101 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYFHRP-AVIAA---ERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCY 101 (172)
T ss_pred HHHhhcCCceEEEeecccccccCc-cccch---hhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeec
Confidence 445578899999998731 1110 01111 1334444433322 22222467788888888763 6789999999
Q ss_pred CCCchHHHHHHH--HHHHcCCCHHHHHHHHHHhhCCCCCchHHHHHHhcccc
Q 028894 114 RGKHRTGCLVGC--LRKLQNWCLSSVFEEYRHFAGLKSRDTDLKFMETFNVM 163 (202)
Q Consensus 114 ~G~~RTG~vva~--~l~~~gws~~~a~~ey~~~~~~~~~~~~~~fie~f~~~ 163 (202)
+|.+||..++.. +-..-.+...+..+..+..+.. . ..|.+.|..+|..
T Consensus 102 aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~-a-tPN~RliaI~d~~ 151 (172)
T COG5350 102 AGISRSTAAALIAALALAPDMDETELAERLRALSPY-A-TPNPRLIAIADAA 151 (172)
T ss_pred cccccchHHHHHHHHhhccccChHHHHHHHHhcCcc-c-CCChhHHHHHHHH
Confidence 999999755443 3334566777776666666532 2 2366777777754
No 39
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=97.55 E-value=0.00029 Score=61.70 Aligned_cols=41 Identities=27% Similarity=0.631 Sum_probs=30.3
Q ss_pred HHHHHHHHHH---HHhCCCCcEEEEeCCCCchHHHHHHHHHHHc
Q 028894 90 KDTIMEALKI---LIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQ 130 (202)
Q Consensus 90 ~~~i~~~l~~---i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~ 130 (202)
...+.++++. ..+...+|++|||.+|.+|||+.+|+=+.++
T Consensus 269 ~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLq 312 (374)
T KOG0791|consen 269 TESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQ 312 (374)
T ss_pred chhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHH
Confidence 3444444444 3445678999999999999999999977653
No 40
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=97.53 E-value=0.00025 Score=69.04 Aligned_cols=58 Identities=22% Similarity=0.363 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhC--C-CCcEEEEeCCCCchHHHHHHH----HHHH--cCCCHHHHHHHHHHhhCC
Q 028894 90 KDTIMEALKILIDV--R-NHPVLIHCKRGKHRTGCLVGC----LRKL--QNWCLSSVFEEYRHFAGL 147 (202)
Q Consensus 90 ~~~i~~~l~~i~~~--~-~~pVlVHC~~G~~RTG~vva~----~l~~--~gws~~~a~~ey~~~~~~ 147 (202)
.+.+.++++.+... . +-||+|||.+|.||||+++.+ +++. .-...-+++.-+|.-+..
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~ 1111 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAM 1111 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhh
Confidence 45556666665542 2 569999999999999988754 3332 466777888877766543
No 41
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=97.24 E-value=0.0015 Score=58.05 Aligned_cols=41 Identities=27% Similarity=0.433 Sum_probs=28.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHH---H-cC---CCHHHHHHHHHHh
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRK---L-QN---WCLSSVFEEYRHF 144 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~---~-~g---ws~~~a~~ey~~~ 144 (202)
..+|+.|||.+|.||||++++.-.. + .+ -...+++.+.|.-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~q 345 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQ 345 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 4689999999999999999986532 2 22 2356665545444
No 42
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=97.10 E-value=0.00073 Score=60.68 Aligned_cols=59 Identities=17% Similarity=0.270 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHHHhC-----CCCcEEEEeCCCCchHHHHHH--HHHH---HcCC----CHHHHHHHHHHhhCC
Q 028894 89 PKDTIMEALKILIDV-----RNHPVLIHCKRGKHRTGCLVG--CLRK---LQNW----CLSSVFEEYRHFAGL 147 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~-----~~~pVlVHC~~G~~RTG~vva--~~l~---~~gw----s~~~a~~ey~~~~~~ 147 (202)
.+-.+..+|+.+... +.+||.|||+||.||||+++- +++- ..|. +...-+.-.|..++.
T Consensus 430 dPg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSG 502 (600)
T KOG0790|consen 430 DPGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSG 502 (600)
T ss_pred CccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcc
Confidence 344555666655431 357999999999999997654 3432 2454 333444445555544
No 43
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=96.74 E-value=0.0014 Score=64.36 Aligned_cols=71 Identities=15% Similarity=0.346 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHh---CCCCcEEEEeCCCCchHHHHHHH---HHHHcCCCHHHHHHHHHHhh--CCCCCchHHHHHHhcc
Q 028894 91 DTIMEALKILID---VRNHPVLIHCKRGKHRTGCLVGC---LRKLQNWCLSSVFEEYRHFA--GLKSRDTDLKFMETFN 161 (202)
Q Consensus 91 ~~i~~~l~~i~~---~~~~pVlVHC~~G~~RTG~vva~---~l~~~gws~~~a~~ey~~~~--~~~~~~~~~~fie~f~ 161 (202)
..+..+++.+.. ...+|++|||++|.||||+.+++ +.++..-...+++.-....+ +..-.+..++|+--.+
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~ 791 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHE 791 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHH
Confidence 445555555544 24699999999999999987653 44433333334433332222 2233455677775444
No 44
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.27 E-value=0.039 Score=52.32 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHh---CCCCcEEEEeCCCCchHHHHHHH----HHHHcCCCHHHHHHHHHHhh
Q 028894 89 PKDTIMEALKILID---VRNHPVLIHCKRGKHRTGCLVGC----LRKLQNWCLSSVFEEYRHFA 145 (202)
Q Consensus 89 ~~~~i~~~l~~i~~---~~~~pVlVHC~~G~~RTG~vva~----~l~~~gws~~~a~~ey~~~~ 145 (202)
+...+.++=+.+.. -..-||+|||..|.||||+-+++ -|+..|...-+|.+-....+
T Consensus 908 sarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlR 971 (1004)
T KOG0793|consen 908 SARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLR 971 (1004)
T ss_pred chHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHh
Confidence 34445444444432 13468999999999999987664 23457887777766554443
No 45
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=95.04 E-value=0.17 Score=46.27 Aligned_cols=102 Identities=13% Similarity=0.216 Sum_probs=60.2
Q ss_pred ccccccceeecCCCCCCChh--H--HhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHH
Q 028894 21 FSMVEEGIYRSSFPQSSNFP--F--LQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEA 96 (202)
Q Consensus 21 f~~V~~~Lyrs~~p~~~~~~--~--L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~ 96 (202)
...++++||.|.-....... . -....+..||++.+..... ......-.++++|+...+.....+ ...+.++
T Consensus 289 ~~~~~~~i~ig~~~~~l~~~~~~~~~~~~~~~~vI~~s~~~~~~----~~~~~~~~~L~l~i~~~K~gs~~L-R~~LP~i 363 (451)
T PF04179_consen 289 IDPGTTGIYIGKISSNLAISKAQLPDLESEFDCVINCSESPTPK----ESWPKSPKYLHLPIPSSKKGSRDL-RKALPKI 363 (451)
T ss_pred cccCCCCeEEeccCCccccchhhccccCCCcCEEEEcCCCcccc----cccCCCceEEeCcCCCCcccHHHH-HHHHHHH
Confidence 33456778888776522221 1 2345688999998764321 111246799999998776421000 1223333
Q ss_pred HHHHHh---C-CCCcEEEEeCCCCchHHHHHHHHH
Q 028894 97 LKILID---V-RNHPVLIHCKRGKHRTGCLVGCLR 127 (202)
Q Consensus 97 l~~i~~---~-~~~pVlVHC~~G~~RTG~vva~~l 127 (202)
..++.. . .+.+|+|+|..|+|.+-.|+.+++
T Consensus 364 ~~fv~~~L~~~~~~~iLV~C~sGkDlSVgVaLaIL 398 (451)
T PF04179_consen 364 CSFVRSHLSSDPGKPILVCCDSGKDLSVGVALAIL 398 (451)
T ss_pred HHHHHHHhcccCCCcEEEEcCCcchHHHHHHHHHH
Confidence 333332 2 378999999999999865555544
No 46
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=94.80 E-value=0.24 Score=36.31 Aligned_cols=44 Identities=11% Similarity=-0.049 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
+.+.+.+.+....-..+.||+|+|..| ++.+..++.+++..|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~vv~~c~~g-~~~a~~~~~~l~~~G~~ 106 (122)
T cd01448 63 SPEEFAELLGSLGISNDDTVVVYDDGG-GFFAARAWWTLRYFGHE 106 (122)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCC-CccHHHHHHHHHHcCCC
Confidence 345565555543224688999999997 44455555555666765
No 47
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=94.33 E-value=0.034 Score=54.96 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=26.4
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHH
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSS 136 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~ 136 (202)
..+|+.|||..|.+|||+.+|+-..+..+..+.
T Consensus 1017 ~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~ 1049 (1087)
T KOG4228|consen 1017 ADGPIIVHCLNGVGRTGTFCAISILLERMRKEG 1049 (1087)
T ss_pred CCCCEEEEEcCCCcceeehHHHHHHHHHHhhcC
Confidence 389999999999999999999877654444333
No 48
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=94.31 E-value=0.23 Score=36.93 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=33.1
Q ss_pred hHHhccCCcEEEEcCCCCC------C-chhHhHhhhCCcEEEEeecCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPY------P-EENLKFLAAQNIRLFHFGIEGK 81 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~------~-~~~~~~~~~~gI~~~~ipi~d~ 81 (202)
..|+..||+.|||+|.-+. . +....++...||.|+|+|-.+.
T Consensus 7 ~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~Lg~ 55 (122)
T PF04343_consen 7 DLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPELGP 55 (122)
T ss_pred HHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhhcC
Confidence 5688999999999987543 2 2456788889999999997554
No 49
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=94.24 E-value=0.089 Score=46.54 Aligned_cols=27 Identities=33% Similarity=0.479 Sum_probs=21.9
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHH
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKL 129 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~ 129 (202)
..+.+|||||..|.|||..++++..++
T Consensus 229 ~~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 229 DEGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp TT--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred ccCceEEEEcCCCCcccHHHHHHHHHH
Confidence 478899999999999999999887664
No 50
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.073 Score=49.68 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=20.3
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHH
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCL 126 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~ 126 (202)
....||||||+.|-|||.-++++-
T Consensus 372 ~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 372 SESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred cCCceEEEEcCCCccchHHHHHHH
Confidence 467899999999999999776653
No 51
>PLN02160 thiosulfate sulfurtransferase
Probab=94.09 E-value=0.25 Score=37.57 Aligned_cols=86 Identities=9% Similarity=0.086 Sum_probs=41.6
Q ss_pred ChhHHhccCCcEEEEcCCC-CCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 028894 38 NFPFLQTLNLRSIIYLCPE-PYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGK 116 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~e-~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~ 116 (202)
++..+.+.+ ..|||+|+. ++.. ..-.|...+++|.........-.+.+...+... .+ ..+.||++||..|.
T Consensus 21 e~~~~~~~~-~~lIDVR~~~E~~~-----ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~-~~-~~~~~IivyC~sG~ 92 (136)
T PLN02160 21 QAKTLLQSG-HQYLDVRTQDEFRR-----GHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSS-LL-NPADDILVGCQSGA 92 (136)
T ss_pred HHHHHHhCC-CEEEECCCHHHHhc-----CCCCCcceecccchhcCcccccCCHHHHHHHHh-cc-CCCCcEEEECCCcH
Confidence 344444445 379999974 2210 001232346677632210000012222222222 22 35689999999984
Q ss_pred chHHHHHHHHHHHcCCC
Q 028894 117 HRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 117 ~RTG~vva~~l~~~gws 133 (202)
|+...+..+ ...|.+
T Consensus 93 -RS~~Aa~~L-~~~G~~ 107 (136)
T PLN02160 93 -RSLKATTEL-VAAGYK 107 (136)
T ss_pred -HHHHHHHHH-HHcCCC
Confidence 777654444 455654
No 52
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=93.67 E-value=0.25 Score=34.96 Aligned_cols=29 Identities=21% Similarity=0.318 Sum_probs=20.4
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.++.+|+|+|..|. |+...+. ++..+|.+
T Consensus 59 ~~~~~ivvyC~~G~-rs~~a~~-~L~~~G~~ 87 (101)
T cd01518 59 LKGKKVLMYCTGGI-RCEKASA-YLKERGFK 87 (101)
T ss_pred cCCCEEEEECCCch-hHHHHHH-HHHHhCCc
Confidence 46789999999884 8876544 44556664
No 53
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=93.39 E-value=0.54 Score=33.28 Aligned_cols=75 Identities=11% Similarity=0.204 Sum_probs=43.1
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcE-EEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIR-LFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~-~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
..+...+-..+||+|... ++...+-.. ..++|+.+.... ..... ..++.+++|+|.+|. |
T Consensus 13 ~~~~~~~~~~liDvR~~~------e~~~~~i~~~~~~ip~~~~~~~------~~~~~------~~~~~~ivv~C~~G~-r 73 (110)
T COG0607 13 ALLLAGEDAVLLDVREPE------EYERGHIPGAAINIPLSELKAA------ENLLE------LPDDDPIVVYCASGV-R 73 (110)
T ss_pred HHhhccCCCEEEeccChh------HhhhcCCCcceeeeecccchhh------hcccc------cCCCCeEEEEeCCCC-C
Confidence 445566778899999751 111112233 677777653211 00000 347899999999996 7
Q ss_pred HHHHHHHHHHHcCCCH
Q 028894 119 TGCLVGCLRKLQNWCL 134 (202)
Q Consensus 119 TG~vva~~l~~~gws~ 134 (202)
++.. +.+|+.+|.+.
T Consensus 74 S~~a-a~~L~~~G~~~ 88 (110)
T COG0607 74 SAAA-AAALKLAGFTN 88 (110)
T ss_pred hHHH-HHHHHHcCCcc
Confidence 7554 44555555443
No 54
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=92.47 E-value=0.19 Score=46.84 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.5
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHH
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKL 129 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~ 129 (202)
..+.+|||||..|-|||..|+++..++
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQll 368 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLL 368 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHH
Confidence 467899999999999999999987654
No 55
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=92.29 E-value=0.44 Score=34.27 Aligned_cols=43 Identities=12% Similarity=0.097 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
+...+...+..+....+.||+|||..|. |+.. ++..+...|.+
T Consensus 50 p~~~l~~~~~~l~~~~~~~ivv~C~~G~-rs~~-a~~~L~~~G~~ 92 (109)
T cd01533 50 PGAELVLRVGELAPDPRTPIVVNCAGRT-RSII-GAQSLINAGLP 92 (109)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCCc-hHHH-HHHHHHHCCCC
Confidence 3445555555553335689999999986 7744 44555566764
No 56
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=90.32 E-value=1.8 Score=36.20 Aligned_cols=91 Identities=20% Similarity=0.308 Sum_probs=63.0
Q ss_pred hhHHhccCCcEEEEcCCC--CCCchhHhHhhhCCcEEEEe---ecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q 028894 39 FPFLQTLNLRSIIYLCPE--PYPEENLKFLAAQNIRLFHF---GIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCK 113 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e--~~~~~~~~~~~~~gI~~~~i---pi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~ 113 (202)
++.|+.+|+|.|--++|= +..+...+++++.||+...+ .+.++.. ...++++.+.++++.+..+.-..|++-|+
T Consensus 112 ~~AL~alg~~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~-ia~i~p~~i~~~~~~~~~~~aDAifisCT 190 (239)
T TIGR02990 112 VDGLAALGVRRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDRE-MARISPDCIVEAALAAFDPDADALFLSCT 190 (239)
T ss_pred HHHHHHcCCCEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCce-eeecCHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 577899999999999972 12246788999999998877 3333321 23467888888887775555667999998
Q ss_pred CCCchHHHHHHHHHHHcCC
Q 028894 114 RGKHRTGCLVGCLRKLQNW 132 (202)
Q Consensus 114 ~G~~RTG~vva~~l~~~gw 132 (202)
. =||--++.-+-...|.
T Consensus 191 n--Lrt~~vi~~lE~~lGk 207 (239)
T TIGR02990 191 A--LRAATCAQRIEQAIGK 207 (239)
T ss_pred C--chhHHHHHHHHHHHCC
Confidence 6 3666555555544454
No 57
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=89.72 E-value=2.6 Score=28.50 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=18.9
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHcCCCH
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCL 134 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~ 134 (202)
..+.+|+|+|..|. |+ ..++.++...|...
T Consensus 54 ~~~~~iv~~c~~g~-~a-~~~~~~l~~~G~~~ 83 (100)
T smart00450 54 DKDKPVVVYCRSGN-RS-AKAAWLLRELGFKN 83 (100)
T ss_pred CCCCeEEEEeCCCc-HH-HHHHHHHHHcCCCc
Confidence 46789999996654 55 44444445556553
No 58
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.22 E-value=2.2 Score=32.57 Aligned_cols=83 Identities=6% Similarity=0.039 Sum_probs=46.1
Q ss_pred hHHhccCCcEEEEcCCC-CCCchhHhHhhhCC-cEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 40 PFLQTLNLRSIIYLCPE-PYPEENLKFLAAQN-IRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e-~~~~~~~~~~~~~g-I~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
..|-+.|=...||+|.. ++. +-+ =.-++||..-... ...+....+.+-+..........++|+|..|+
T Consensus 31 k~L~~~~~~~llDVRepeEfk--------~gh~~~siNiPy~~~~~-~~~l~~~eF~kqvg~~kp~~d~eiIf~C~SG~- 100 (136)
T KOG1530|consen 31 KNLLQHPDVVLLDVREPEEFK--------QGHIPASINIPYMSRPG-AGALKNPEFLKQVGSSKPPHDKEIIFGCASGV- 100 (136)
T ss_pred HHHhcCCCEEEEeecCHHHhh--------ccCCcceEecccccccc-ccccCCHHHHHHhcccCCCCCCcEEEEeccCc-
Confidence 44555666888999853 221 122 3667888743321 11233344444444443345568999999997
Q ss_pred hHHHHHHHHHHHcCCC
Q 028894 118 RTGCLVGCLRKLQNWC 133 (202)
Q Consensus 118 RTG~vva~~l~~~gws 133 (202)
|+....-.+ ..+|.+
T Consensus 101 Rs~~A~~~l-~s~Gyk 115 (136)
T KOG1530|consen 101 RSLKATKIL-VSAGYK 115 (136)
T ss_pred chhHHHHHH-HHcCcc
Confidence 776544433 344543
No 59
>PRK01415 hypothetical protein; Validated
Probab=88.99 E-value=1.2 Score=37.56 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=20.7
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
..+.||+++|++|. |+-..++ +|+.+|..
T Consensus 169 ~k~k~Iv~yCtgGi-Rs~kAa~-~L~~~Gf~ 197 (247)
T PRK01415 169 LKGKKIAMVCTGGI-RCEKSTS-LLKSIGYD 197 (247)
T ss_pred cCCCeEEEECCCCh-HHHHHHH-HHHHcCCC
Confidence 36789999999995 7765544 45556664
No 60
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.67 E-value=4 Score=33.71 Aligned_cols=93 Identities=18% Similarity=0.244 Sum_probs=65.1
Q ss_pred CChhHHhccCCcEEEEcCC--CCCCchhHhHhhhCCcEEEEee---cCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 028894 37 SNFPFLQTLNLRSIIYLCP--EPYPEENLKFLAAQNIRLFHFG---IEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIH 111 (202)
Q Consensus 37 ~~~~~L~~~giktVI~L~~--e~~~~~~~~~~~~~gI~~~~ip---i~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVH 111 (202)
+-++.|+.+|++.|.-|.| ++..+...+|++.+|++...+- +.|+-+ --.+++..+.++-+.+...+--.+++-
T Consensus 108 Avv~aL~al~a~ri~vlTPY~~evn~~e~ef~~~~Gfeiv~~~~Lgi~dn~e-igr~~P~~~y~lAk~~~~~~~DaiFiS 186 (238)
T COG3473 108 AVVEALNALGAQRISVLTPYIDEVNQREIEFLEANGFEIVDFKGLGITDNLE-IGRQEPWAVYRLAKEVFTPDADAIFIS 186 (238)
T ss_pred HHHHHHHhhCcceEEEeccchhhhhhHHHHHHHhCCeEEEEeeccCCcccch-hcccChHHHHHHHHHhcCCCCCeEEEE
Confidence 3578899999999999997 3556678899999999877765 444422 112345555555555555555679999
Q ss_pred eCCCCchHHHHHHHHHHHcCC
Q 028894 112 CKRGKHRTGCLVGCLRKLQNW 132 (202)
Q Consensus 112 C~~G~~RTG~vva~~l~~~gw 132 (202)
|+. =||--++..+-...|.
T Consensus 187 CTn--lRt~eii~~lE~~~G~ 205 (238)
T COG3473 187 CTN--LRTFEIIEKLERDTGV 205 (238)
T ss_pred eec--cccHHHHHHHHHHhCC
Confidence 997 4787777777666565
No 61
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=86.68 E-value=4.8 Score=28.17 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=39.8
Q ss_pred ccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh--CCCCcEEEEeCCCCchHHH
Q 028894 44 TLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILID--VRNHPVLIHCKRGKHRTGC 121 (202)
Q Consensus 44 ~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~--~~~~pVlVHC~~G~~RTG~ 121 (202)
.-+=-.|||+|+.. ++...+=-.-+++|.............+.+...+..... ..+.+|+++|..|. |++.
T Consensus 10 ~~~~~~liD~R~~~------~~~~~hI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc~~~~-~~~~ 82 (113)
T PF00581_consen 10 ENESVLLIDVRSPE------EYERGHIPGAVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYCSSGW-RSGS 82 (113)
T ss_dssp TTTTEEEEEESSHH------HHHHSBETTEEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEESSSC-HHHH
T ss_pred hCCCeEEEEeCCHH------HHHcCCCCCCccccccccccccccccccccccccccccccccccccceeeeeccc-ccch
Confidence 44567899999631 111122112377777432111111234455444444433 35678999997765 6666
Q ss_pred HHHH
Q 028894 122 LVGC 125 (202)
Q Consensus 122 vva~ 125 (202)
.+++
T Consensus 83 ~~~~ 86 (113)
T PF00581_consen 83 AAAA 86 (113)
T ss_dssp HHHH
T ss_pred hHHH
Confidence 6665
No 62
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=85.54 E-value=3 Score=36.35 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=20.7
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
++.||+|||++|. |+...+ .+|+.+|.+
T Consensus 170 kdk~IvvyC~~G~-Rs~~aa-~~L~~~Gf~ 197 (314)
T PRK00142 170 KDKKVVMYCTGGI-RCEKAS-AWMKHEGFK 197 (314)
T ss_pred CcCeEEEECCCCc-HHHHHH-HHHHHcCCC
Confidence 6789999999985 886654 455557764
No 63
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=84.53 E-value=3.7 Score=36.23 Aligned_cols=29 Identities=31% Similarity=0.342 Sum_probs=21.1
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.+|+|+|..|-.|++.++-.+ ...|+.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~~L-~~~G~~ 115 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQWL-KEAGID 115 (345)
T ss_pred CCCeEEEEECCCChHHHHHHHHH-HHcCCC
Confidence 57899999976656988865444 456774
No 64
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=84.06 E-value=2.2 Score=30.02 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
..+.+.+.+......++.+|+|+|..|. |+.. ++.++...|..
T Consensus 50 ~~~~~~~~~~~~~~~~~~~ivv~c~~g~-~s~~-~~~~l~~~G~~ 92 (106)
T cd01519 50 SEEEFEKKYGFPKPSKDKELIFYCKAGV-RSKA-AAELARSLGYE 92 (106)
T ss_pred CHHHHHHHhcccCCCCCCeEEEECCCcH-HHHH-HHHHHHHcCCc
Confidence 3445555544333235789999999885 6544 45555666764
No 65
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=83.66 E-value=1.7 Score=31.24 Aligned_cols=74 Identities=16% Similarity=0.171 Sum_probs=41.1
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchH
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRT 119 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RT 119 (202)
..|.=..-+.+||+|+.. .+. . -|+|- . ..++...+...+..+....+.+|+++|..|. |+
T Consensus 11 ~~~~~~~~~~lIDvR~~~---ef~----~-----ghIpg--A----inip~~~l~~~l~~~~~~~~~~vvlyC~~G~-rS 71 (101)
T TIGR02981 11 FALPLFAAEHWIDVRIPE---QYQ----Q-----EHIQG--A----INIPLKEIKEHIATAVPDKNDTVKLYCNAGR-QS 71 (101)
T ss_pred HhhhhccCCEEEECCCHH---HHh----c-----CCCCC--C----EECCHHHHHHHHHHhCCCCCCeEEEEeCCCH-HH
Confidence 445555677899999641 111 1 12321 1 1234445555555443335678999999985 76
Q ss_pred HHHHHHHHHHcCCC
Q 028894 120 GCLVGCLRKLQNWC 133 (202)
Q Consensus 120 G~vva~~l~~~gws 133 (202)
...+ ..+...|.+
T Consensus 72 ~~aa-~~L~~~G~~ 84 (101)
T TIGR02981 72 GMAK-DILLDMGYT 84 (101)
T ss_pred HHHH-HHHHHcCCC
Confidence 6654 444455654
No 66
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=83.17 E-value=5.9 Score=28.86 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=19.3
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
..+.+|+++|..|. |+...+..+ ...|.+
T Consensus 62 ~~~~~ivv~C~~G~-rs~~aa~~L-~~~G~~ 90 (117)
T cd01522 62 GKDRPVLLLCRSGN-RSIAAAEAA-AQAGFT 90 (117)
T ss_pred CCCCeEEEEcCCCc-cHHHHHHHH-HHCCCC
Confidence 36789999999884 776654444 444543
No 67
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=82.58 E-value=4.3 Score=29.24 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=15.3
Q ss_pred CCCcEEEEeCCCCchHHHHHHH
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGC 125 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~ 125 (202)
...+|++||..|..|+...+..
T Consensus 65 ~~~~iv~~C~~~g~rs~~a~~~ 86 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRAARW 86 (113)
T ss_pred CCCEEEEECCCCCcccHHHHHH
Confidence 4578999999865576554433
No 68
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=82.47 E-value=1.9 Score=30.29 Aligned_cols=28 Identities=7% Similarity=0.169 Sum_probs=19.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.||+|+|..|. |+..++.. |...|.+
T Consensus 60 ~~~~ivv~C~~G~-rs~~aa~~-L~~~G~~ 87 (100)
T cd01523 60 DDQEVTVICAKEG-SSQFVAEL-LAERGYD 87 (100)
T ss_pred CCCeEEEEcCCCC-cHHHHHHH-HHHcCce
Confidence 5789999999985 77655444 4455654
No 69
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=81.38 E-value=5.8 Score=27.22 Aligned_cols=41 Identities=20% Similarity=0.355 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
+...+.+.+..+ +.+.||+|+|..|. |+.. ++.++..+|.+
T Consensus 42 p~~~~~~~~~~~--~~~~~ivv~c~~g~-~s~~-a~~~l~~~G~~ 82 (96)
T cd01444 42 DEDSLDDWLGDL--DRDRPVVVYCYHGN-SSAQ-LAQALREAGFT 82 (96)
T ss_pred CHHHHHHHHhhc--CCCCCEEEEeCCCC-hHHH-HHHHHHHcCCc
Confidence 334444444433 36789999999664 5444 45555556654
No 70
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=81.36 E-value=5 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=19.1
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.+|+++|..|. |+... +..+...|.+
T Consensus 55 ~~~~iv~~c~~G~-rs~~a-a~~L~~~G~~ 82 (95)
T cd01534 55 RGARIVLADDDGV-RADMT-ASWLAQMGWE 82 (95)
T ss_pred CCCeEEEECCCCC-hHHHH-HHHHHHcCCE
Confidence 4678999999986 66544 4444556664
No 71
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=81.33 E-value=5.6 Score=28.75 Aligned_cols=43 Identities=19% Similarity=0.352 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
+.+++.+.++.+....+.+|+++|..| .|+...+-.+ ...|.+
T Consensus 44 P~~~l~~~l~~l~~~~~~~IVlyC~~G-~rS~~aa~~L-~~~G~~ 86 (104)
T PRK10287 44 PLKEVKERIATAVPDKNDTVKLYCNAG-RQSGQAKEIL-SEMGYT 86 (104)
T ss_pred CHHHHHHHHHhcCCCCCCeEEEEeCCC-hHHHHHHHHH-HHcCCC
Confidence 344555545444333567899999988 4666554433 445654
No 72
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=80.85 E-value=4.2 Score=36.24 Aligned_cols=26 Identities=15% Similarity=0.206 Sum_probs=18.1
Q ss_pred CcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 106 HPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 106 ~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.||+|||..|. |+...+ ..|.-+|++
T Consensus 333 ~~Ivv~C~sG~-RS~~Aa-~~L~~~G~~ 358 (370)
T PRK05600 333 DNVVVYCASGI-RSADFI-EKYSHLGHE 358 (370)
T ss_pred CcEEEECCCCh-hHHHHH-HHHHHcCCC
Confidence 39999999995 776654 444445653
No 73
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=80.79 E-value=2.2 Score=36.36 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=31.8
Q ss_pred hHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q 028894 64 KFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCK 113 (202)
Q Consensus 64 ~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~ 113 (202)
.++++.|++|+- |+++.. .+.+.++|+.+.+ -++||+||..
T Consensus 229 ~lFe~LG~~Y~G-PiDGHd-------l~~Li~~l~~~K~-~~gPvllHV~ 269 (270)
T PF13292_consen 229 NLFEELGFDYIG-PIDGHD-------LEELIEVLENAKD-IDGPVLLHVI 269 (270)
T ss_dssp CCCHHCT-EEEE-EEETT--------HHHHHHHHHHHCC-SSSEEEEEEE
T ss_pred HHHHHcCCeEEe-ccCCCC-------HHHHHHHHHHHhc-CCCCEEEEEe
Confidence 578889999998 898863 5778888888864 5899999963
No 74
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=80.20 E-value=6.6 Score=27.51 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHh-CCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 91 DTIMEALKILID-VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 91 ~~i~~~l~~i~~-~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
..+.+.++.+.. ..+.||+++|..|. |+...+..+ ...|.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~vv~~c~~g~-rs~~~~~~l-~~~G~~ 84 (101)
T cd01528 43 SEIPERSKELDSDNPDKDIVVLCHHGG-RSMQVAQWL-LRQGFE 84 (101)
T ss_pred HHHHHHHHHhcccCCCCeEEEEeCCCc-hHHHHHHHH-HHcCCc
Confidence 344444444432 25789999999884 765544434 346665
No 75
>PF14671 DSPn: Dual specificity protein phosphatase, N-terminal half; PDB: 1OHD_A 1OHE_A 1OHC_A.
Probab=79.02 E-value=6.6 Score=30.28 Aligned_cols=39 Identities=8% Similarity=0.226 Sum_probs=24.2
Q ss_pred CCcEEEEeCCCCch----HHHHHHHHHH-HcCCCHHHHHHHHHH
Q 028894 105 NHPVLIHCKRGKHR----TGCLVGCLRK-LQNWCLSSVFEEYRH 143 (202)
Q Consensus 105 ~~pVlVHC~~G~~R----TG~vva~~l~-~~gws~~~a~~ey~~ 143 (202)
.+..+|||++...+ +.+++++|.+ .+|||.++|++-+..
T Consensus 66 ~~k~iv~yts~d~~kRaNAA~Lig~y~Vi~l~~spe~A~~~l~~ 109 (141)
T PF14671_consen 66 KKKKIVHYTSSDPKKRANAAFLIGAYAVIYLGMSPEEAYKPLAS 109 (141)
T ss_dssp TTSEEEEEE-S-HHHHHHHHHHHHHHHHHTS---HHHHHHHHTT
T ss_pred cCCeEEEECCCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 45677887766443 3577888888 599999999876543
No 76
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=78.93 E-value=3.4 Score=39.89 Aligned_cols=47 Identities=15% Similarity=0.332 Sum_probs=36.4
Q ss_pred hHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCCCch
Q 028894 64 KFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRGKHR 118 (202)
Q Consensus 64 ~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G~~R 118 (202)
.++++.|++|+- |++++ .-+.+.++|+.+.+.. .+||+||-..-|++
T Consensus 320 ~lFe~lG~~Y~G-pvDGH-------di~~Li~~l~~~k~~~~~~PvlvHv~T~KGk 367 (701)
T PLN02225 320 TLFEELGLYYIG-PVDGH-------NIEDLVCVLREVSSLDSMGPVLVHVITEENR 367 (701)
T ss_pred CcHHHcCCeEEC-ccCCC-------CHHHHHHHHHHHHcCCCCCCEEEEEEecCCC
Confidence 477889999988 88876 3578888999887643 59999998555543
No 77
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=75.58 E-value=4.7 Score=38.16 Aligned_cols=44 Identities=23% Similarity=0.366 Sum_probs=34.6
Q ss_pred hHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 028894 64 KFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGK 116 (202)
Q Consensus 64 ~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~ 116 (202)
.++++.|++|+- |++++ +.+.+...|+.+.+ .++||++|+..-|
T Consensus 237 ~lFeelGf~YiG-PiDGH-------ni~~Li~~Lk~~kd-~~gPvllHv~T~K 280 (627)
T COG1154 237 TLFEELGFNYIG-PIDGH-------NLEELIPTLKNAKD-LKGPVLLHVVTKK 280 (627)
T ss_pred hhHHHhCCeeEC-CcCCC-------CHHHHHHHHHHHhc-CCCCEEEEEEecC
Confidence 377889999987 88876 46778888888876 7889999985444
No 78
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=75.14 E-value=13 Score=30.75 Aligned_cols=82 Identities=15% Similarity=0.037 Sum_probs=52.7
Q ss_pred hhHHhccCCcEEEEcCC-CC--CC----chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEE
Q 028894 39 FPFLQTLNLRSIIYLCP-EP--YP----EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLI 110 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~-e~--~~----~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlV 110 (202)
+..+++.|++..+++.. .. .+ ....+.+.+.|+..+.+. |... .+.++++.+.++.+.+.- +-|+-+
T Consensus 121 i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~--Dt~G---~~~P~~v~~li~~l~~~~~~~~~~~ 195 (265)
T cd03174 121 IEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK--DTVG---LATPEEVAELVKALREALPDVPLGL 195 (265)
T ss_pred HHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec--hhcC---CcCHHHHHHHHHHHHHhCCCCeEEE
Confidence 45568999999999943 22 22 234455677888877754 3221 246788999999888743 378889
Q ss_pred EeCCCCchHHHHHHHHHH
Q 028894 111 HCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 111 HC~~G~~RTG~vva~~l~ 128 (202)
||+. --|+.+|-.+.
T Consensus 196 H~Hn---~~gla~an~la 210 (265)
T cd03174 196 HTHN---TLGLAVANSLA 210 (265)
T ss_pred EeCC---CCChHHHHHHH
Confidence 9874 34444554443
No 79
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=74.79 E-value=6.5 Score=37.93 Aligned_cols=42 Identities=19% Similarity=0.391 Sum_probs=32.7
Q ss_pred HhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCC
Q 028894 65 FLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKR 114 (202)
Q Consensus 65 ~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~ 114 (202)
++++.|++|+. |++++ ..+.+.++|+.+.+.. ++|++|||..
T Consensus 277 ~fe~~G~~y~g-~iDGH-------d~~~L~~al~~~k~~~~~~P~vihv~T 319 (677)
T PLN02582 277 LFEELGLYYIG-PVDGH-------NIDDLVTILREVKSTKTTGPVLIHVVT 319 (677)
T ss_pred hHHHcCCeEEe-eeCCC-------CHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence 57788999886 77776 3678888999887643 7999999844
No 80
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=74.44 E-value=5.1 Score=33.96 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCH
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCL 134 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~ 134 (202)
.+.+...+...--..+.||+++|..|. |+ .+++.++...|...
T Consensus 216 ~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A-~~~~~~l~~~G~~~ 258 (281)
T PRK11493 216 TDELDAIFFGRGVSFDRPIIASCGSGV-TA-AVVVLALATLDVPN 258 (281)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECCcHH-HH-HHHHHHHHHcCCCC
Confidence 445544443221135679999998875 44 44555556777763
No 81
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=72.93 E-value=6.5 Score=28.19 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.+.+.+..+.-..+.+|+++|..|. |+..+ +..+...|..
T Consensus 63 ~~~~~~~~~~~~~~~~~~iv~yc~~g~-~s~~~-~~~l~~~G~~ 104 (118)
T cd01449 63 PEELRALFAALGITPDKPVIVYCGSGV-TACVL-LLALELLGYK 104 (118)
T ss_pred HHHHHHHHHHcCCCCCCCEEEECCcHH-HHHHH-HHHHHHcCCC
Confidence 344544444432236789999999874 66554 3444455654
No 82
>PRK05320 rhodanese superfamily protein; Provisional
Probab=71.86 E-value=7.8 Score=32.73 Aligned_cols=28 Identities=14% Similarity=0.044 Sum_probs=20.3
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
++.||+++|+.|. |+..++.. |+..|.+
T Consensus 174 kdk~IvvyC~~G~-Rs~~Aa~~-L~~~Gf~ 201 (257)
T PRK05320 174 AGKTVVSFCTGGI-RCEKAAIH-MQEVGID 201 (257)
T ss_pred CCCeEEEECCCCH-HHHHHHHH-HHHcCCc
Confidence 5789999999995 77665554 4456654
No 83
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=71.30 E-value=39 Score=28.55 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=48.7
Q ss_pred hHHhccCCcEEEEcCCC-CCC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC--CcEEEEe
Q 028894 40 PFLQTLNLRSIIYLCPE-PYP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN--HPVLIHC 112 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e-~~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~--~pVlVHC 112 (202)
+..+++|++..+++... ..+ + ...+.+.+.|+..+.++ |... .+.++++.+.++.+.+.-+ -|+-+||
T Consensus 116 ~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~~~i~~H~ 190 (266)
T cd07944 116 KAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV--DSFG---SMYPEDIKRIISLLRSNLDKDIKLGFHA 190 (266)
T ss_pred HHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe--cCCC---CCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 44567788877777532 111 1 22333455677665543 3321 2467889999998876433 7899999
Q ss_pred CCCCchHHHHHHHHHH
Q 028894 113 KRGKHRTGCLVGCLRK 128 (202)
Q Consensus 113 ~~G~~RTG~vva~~l~ 128 (202)
+. -.|+.+|..+.
T Consensus 191 Hn---~~Gla~AN~la 203 (266)
T cd07944 191 HN---NLQLALANTLE 203 (266)
T ss_pred CC---CccHHHHHHHH
Confidence 84 45666665554
No 84
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=70.71 E-value=17 Score=25.00 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=18.7
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.||+|+|..|...+...++-.++..|.+
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa~~L~~~G~~ 78 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAARRLSELGYT 78 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCcc
Confidence 478999999998633344444444444543
No 85
>PRK09875 putative hydrolase; Provisional
Probab=70.37 E-value=17 Score=31.37 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=24.4
Q ss_pred ChhHHhccCCcEEEEcCCCCCC---chhHhHhhhCCcEEE
Q 028894 38 NFPFLQTLNLRSIIYLCPEPYP---EENLKFLAAQNIRLF 74 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~e~~~---~~~~~~~~~~gI~~~ 74 (202)
++..++++|.+|||++++-..- ....+..++.|++.+
T Consensus 39 el~~~~~~Gg~tiVd~T~~g~GRd~~~l~~is~~tgv~Iv 78 (292)
T PRK09875 39 EMNDLMTRGVRNVIEMTNRYMGRNAQFMLDVMRETGINVV 78 (292)
T ss_pred HHHHHHHhCCCeEEecCCCccCcCHHHHHHHHHHhCCcEE
Confidence 4566889999999999975332 234445555565443
No 86
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=69.65 E-value=10 Score=34.96 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=19.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.|++++|.+|. ||..+ |.++..+|++
T Consensus 448 ~~~~iivyC~~G~-rS~~a-a~~L~~~G~~ 475 (482)
T PRK01269 448 QSKTYLLYCDRGV-MSRLQ-ALYLREQGFS 475 (482)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHHHcCCc
Confidence 5679999999996 76655 4444456654
No 87
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=69.40 E-value=7.9 Score=32.57 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=50.2
Q ss_pred ecCCC-CCCCh-hHHhccCCcEEEEcCCC---CCCchhHhHhhhCCcEEEEeecCCCC----CCCCCCCHHHHHHHHHHH
Q 028894 30 RSSFP-QSSNF-PFLQTLNLRSIIYLCPE---PYPEENLKFLAAQNIRLFHFGIEGKT----EPPVSIPKDTIMEALKIL 100 (202)
Q Consensus 30 rs~~p-~~~~~-~~L~~~giktVI~L~~e---~~~~~~~~~~~~~gI~~~~ipi~d~~----~p~~~~~~~~i~~~l~~i 100 (202)
+.+.. +..++ .+|++.||+.|||.+-. ..+....+.|++.||.|+++-=+... +.+ ...+.+.++.+.+
T Consensus 48 ~~G~lg~~~~l~~~l~~~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~eRp~~~~~~~~~~--~~v~~~~eA~~~l 125 (249)
T PF02571_consen 48 RVGRLGDEEGLAEFLRENGIDAVIDATHPFAAEISQNAIEACRELGIPYLRFERPSWQPEPDDNW--HYVDSYEEAAELL 125 (249)
T ss_pred EECCCCCHHHHHHHHHhCCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEEEcCCcccCCCCeE--EEeCCHHHHHHHH
Confidence 33444 55555 77899999999999853 22345677899999999887422111 111 1234566777777
Q ss_pred HhCCCCcEEEE
Q 028894 101 IDVRNHPVLIH 111 (202)
Q Consensus 101 ~~~~~~pVlVH 111 (202)
.+..++.|++-
T Consensus 126 ~~~~~~~iflt 136 (249)
T PF02571_consen 126 KELGGGRIFLT 136 (249)
T ss_pred hhcCCCCEEEe
Confidence 55455777763
No 88
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=69.23 E-value=22 Score=29.83 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=45.6
Q ss_pred hHHhccCCcEEEEcCCC-CCC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeC
Q 028894 40 PFLQTLNLRSIIYLCPE-PYP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCK 113 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e-~~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~ 113 (202)
+..++.|+...+++... ..+ + ...+.+.+.|+..+.+ .|... .+.++++.+.++.+.+.-+. |+-+||+
T Consensus 119 ~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l--~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 119 GAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV--TDSAG---AMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE--cCCCC---CcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 44567777777777321 111 1 2233345567665544 33321 24678899999988765444 8999998
Q ss_pred CCCchHHHHHHHHH
Q 028894 114 RGKHRTGCLVGCLR 127 (202)
Q Consensus 114 ~G~~RTG~vva~~l 127 (202)
.- .|+.+|-.+
T Consensus 194 n~---~GlA~AN~l 204 (263)
T cd07943 194 NN---LGLAVANSL 204 (263)
T ss_pred CC---cchHHHHHH
Confidence 53 444444443
No 89
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=68.27 E-value=6.7 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.512 Sum_probs=17.5
Q ss_pred CCCcEEEEeC-CCCchHHHHHHHHHH
Q 028894 104 RNHPVLIHCK-RGKHRTGCLVGCLRK 128 (202)
Q Consensus 104 ~~~pVlVHC~-~G~~RTG~vva~~l~ 128 (202)
++.+|+|||. +| .|+..++..+..
T Consensus 67 ~~~~vv~yC~~sg-~rs~~aa~~L~~ 91 (121)
T cd01530 67 KRRVLIFHCEFSS-KRGPRMARHLRN 91 (121)
T ss_pred CCCEEEEECCCcc-ccHHHHHHHHHH
Confidence 6789999997 55 587776665543
No 90
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=67.99 E-value=28 Score=30.30 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=17.6
Q ss_pred cEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 107 PVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 107 pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.|+|+|..|-.|++.++..+ ...|+.
T Consensus 76 ~vvvyC~~gG~RS~~aa~~L-~~~G~~ 101 (311)
T TIGR03167 76 QPLLYCWRGGMRSGSLAWLL-AQIGFR 101 (311)
T ss_pred cEEEEECCCChHHHHHHHHH-HHcCCC
Confidence 49999975556888765544 455763
No 91
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=67.57 E-value=10 Score=27.08 Aligned_cols=30 Identities=3% Similarity=-0.001 Sum_probs=19.4
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.||+|+|..|....+..++..+...|..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~ 92 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATKAALKLAELGFP 92 (110)
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHcCCe
Confidence 678999999988643344444444455663
No 92
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=65.82 E-value=15 Score=28.67 Aligned_cols=30 Identities=7% Similarity=0.060 Sum_probs=20.1
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.++.||+++|..|..|+... +..++..|.+
T Consensus 114 ~~d~~IVvYC~~G~~~S~~a-a~~L~~~G~~ 143 (162)
T TIGR03865 114 DKDRPLVFYCLADCWMSWNA-AKRALAYGYS 143 (162)
T ss_pred CCCCEEEEEECCCCHHHHHH-HHHHHhcCCc
Confidence 36789999999887666654 3333445554
No 93
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=65.63 E-value=10 Score=26.16 Aligned_cols=29 Identities=7% Similarity=-0.103 Sum_probs=19.3
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
..+.+|+|+|..| .|+..++. .++..|.+
T Consensus 54 ~~~~~ivv~c~~g-~~s~~~~~-~l~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGS-LLARFAAQ-ELLALGGK 82 (96)
T ss_pred CCCCCEEEEeCCh-HHHHHHHH-HHHHcCCC
Confidence 3578999999877 47766544 44556654
No 94
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=65.47 E-value=11 Score=26.21 Aligned_cols=23 Identities=26% Similarity=0.488 Sum_probs=16.3
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHH
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLR 127 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l 127 (202)
.+.+|+++|..|. |+..++..++
T Consensus 53 ~~~~iv~~c~~g~-~s~~~~~~L~ 75 (99)
T cd01527 53 GANAIIFHCRSGM-RTQQNAERLA 75 (99)
T ss_pred CCCcEEEEeCCCc-hHHHHHHHHH
Confidence 5789999999985 6665444443
No 95
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=64.93 E-value=22 Score=25.07 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
...+.+.+..+ ..+.+++|+|..|. |+ ..++..+...|++
T Consensus 45 ~~~l~~~~~~~--~~~~~ivv~c~~g~-~s-~~a~~~L~~~G~~ 84 (108)
T PRK00162 45 NDSLGAFMRQA--DFDTPVMVMCYHGN-SS-QGAAQYLLQQGFD 84 (108)
T ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCC-CH-HHHHHHHHHCCch
Confidence 34455445443 35789999999886 54 3444455566665
No 96
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=63.83 E-value=2.3 Score=39.48 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=0.0
Q ss_pred CCcEEEEeCCCCchHHHHHHHH
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCL 126 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~ 126 (202)
+.....-|.+||||||++-+-.
T Consensus 453 Gavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 453 GAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp ----------------------
T ss_pred CCeeeccCccCCccccccHHHH
Confidence 4556678999999999876543
No 97
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=63.41 E-value=17 Score=31.52 Aligned_cols=44 Identities=14% Similarity=0.215 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCH
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCL 134 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~ 134 (202)
+.+++.+.+...--..+.+|+++|..|. ++++++..+...|++.
T Consensus 253 ~~~el~~~~~~~gi~~~~~iv~yC~sG~--~A~~~~~~L~~~G~~~ 296 (320)
T PLN02723 253 PAEELKKRFEQEGISLDSPIVASCGTGV--TACILALGLHRLGKTD 296 (320)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH--HHHHHHHHHHHcCCCC
Confidence 4566666555431135789999998864 4555555556778753
No 98
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=62.40 E-value=10 Score=26.23 Aligned_cols=28 Identities=21% Similarity=0.391 Sum_probs=18.6
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.||+|+|..| .|+. .++..+...|..
T Consensus 60 ~~~~ivv~c~~g-~~s~-~~~~~l~~~G~~ 87 (103)
T cd01447 60 EDKPFVFYCASG-WRSA-LAGKTLQDMGLK 87 (103)
T ss_pred CCCeEEEEcCCC-CcHH-HHHHHHHHcChH
Confidence 578999999887 4654 344444555654
No 99
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=62.37 E-value=55 Score=30.02 Aligned_cols=81 Identities=10% Similarity=0.040 Sum_probs=44.4
Q ss_pred hHHhccCCcEEEEcCCC--CCC-----chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 028894 40 PFLQTLNLRSIIYLCPE--PYP-----EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHC 112 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e--~~~-----~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC 112 (202)
+..++.|....++++.. +.. ....+.+.+.|++.+.+ .|... .+.+.++.+.++.+.+.-+-|+-+||
T Consensus 130 ~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i--~Dt~G---~l~P~~v~~lv~alk~~~~~pi~~H~ 204 (448)
T PRK12331 130 KATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICI--KDMAG---ILTPYVAYELVKRIKEAVTVPLEVHT 204 (448)
T ss_pred HHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEE--cCCCC---CCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34456666655554432 111 12233445566665444 33321 14567888888888765558999998
Q ss_pred CCCCchHHHHHHHHHH
Q 028894 113 KRGKHRTGCLVGCLRK 128 (202)
Q Consensus 113 ~~G~~RTG~vva~~l~ 128 (202)
+. -.|+.+|-++.
T Consensus 205 Hn---t~GlA~AN~la 217 (448)
T PRK12331 205 HA---TSGIAEMTYLK 217 (448)
T ss_pred cC---CCCcHHHHHHH
Confidence 74 34555555443
No 100
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=60.44 E-value=19 Score=34.29 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCH
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCL 134 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~ 134 (202)
+.+.+.+.++.+--..+.+|+++|..|. |++. ++..+...|+..
T Consensus 207 ~~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~-~~~~L~~lG~~~ 250 (610)
T PRK09629 207 IRQDMPEILRDLGITPDKEVITHCQTHH-RSGF-TYLVAKALGYPR 250 (610)
T ss_pred CHHHHHHHHHHcCCCCCCCEEEECCCCh-HHHH-HHHHHHHcCCCC
Confidence 4556666655432135789999999884 5554 445556777753
No 101
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=59.52 E-value=16 Score=26.96 Aligned_cols=29 Identities=31% Similarity=0.414 Sum_probs=19.7
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
++.+|+|+|..|-.|+..++ .++...|..
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~-~~L~~~G~~ 113 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLA-WLLESLGID 113 (128)
T ss_pred CCCeEEEEeCCCCccHHHHH-HHHHHcCCc
Confidence 67899999985545776544 454556763
No 102
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=58.45 E-value=7.6 Score=35.85 Aligned_cols=18 Identities=39% Similarity=0.665 Sum_probs=15.0
Q ss_pred EEEeCCCCchHHHHHHHH
Q 028894 109 LIHCKRGKHRTGCLVGCL 126 (202)
Q Consensus 109 lVHC~~G~~RTG~vva~~ 126 (202)
..-|.+||||||.+=+-.
T Consensus 460 ~wNCkSGKDRTGmmD~ei 477 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEI 477 (564)
T ss_pred eeccCCCCccccchHHHH
Confidence 578999999999876654
No 103
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=58.44 E-value=18 Score=25.17 Aligned_cols=28 Identities=7% Similarity=0.019 Sum_probs=18.8
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.+|+++|..|. |++.++. .+...|.+
T Consensus 64 ~~~~vv~~c~~g~-~s~~~a~-~L~~~G~~ 91 (105)
T cd01525 64 KGKIIVIVSHSHK-HAALFAA-FLVKCGVP 91 (105)
T ss_pred cCCeEEEEeCCCc-cHHHHHH-HHHHcCCC
Confidence 3679999999986 6665544 34445553
No 104
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=57.55 E-value=27 Score=25.40 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=19.3
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNW 132 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gw 132 (202)
.+.||+++|..|. |+.. ++..+...|.
T Consensus 71 ~~~~ivv~C~~G~-rs~~-aa~~L~~~G~ 97 (122)
T cd01526 71 KDSPIYVVCRRGN-DSQT-AVRKLKELGL 97 (122)
T ss_pred CCCcEEEECCCCC-cHHH-HHHHHHHcCC
Confidence 5789999999985 7654 4445556676
No 105
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=56.97 E-value=58 Score=26.49 Aligned_cols=82 Identities=13% Similarity=0.122 Sum_probs=50.1
Q ss_pred hhHHhccCCcEEEEcCCCC-CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEe
Q 028894 39 FPFLQTLNLRSIIYLCPEP-YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHC 112 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~-~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC 112 (202)
+.+.+++|++..+++-... .+ + ...+.+.+.|+..+.++=.... +.+.++.+.++.+.+.- +.|+-+||
T Consensus 114 v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~-----~~P~~v~~lv~~~~~~~~~~~l~~H~ 188 (237)
T PF00682_consen 114 VKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLADTVGI-----MTPEDVAELVRALREALPDIPLGFHA 188 (237)
T ss_dssp HHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEEETTS------S-HHHHHHHHHHHHHHSTTSEEEEEE
T ss_pred HHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEeeCccCC-----cCHHHHHHHHHHHHHhccCCeEEEEe
Confidence 4556889999988886532 21 1 2334455568887766532221 36788889999888753 38888998
Q ss_pred CCCCchHHHHHHHHHH
Q 028894 113 KRGKHRTGCLVGCLRK 128 (202)
Q Consensus 113 ~~G~~RTG~vva~~l~ 128 (202)
+. ..|+.+|..+.
T Consensus 189 Hn---d~Gla~An~la 201 (237)
T PF00682_consen 189 HN---DLGLAVANALA 201 (237)
T ss_dssp BB---TTS-HHHHHHH
T ss_pred cC---CccchhHHHHH
Confidence 74 44555555544
No 106
>smart00400 ZnF_CHCC zinc finger.
Probab=56.02 E-value=16 Score=23.01 Aligned_cols=31 Identities=16% Similarity=0.333 Sum_probs=26.2
Q ss_pred EEEeCCCCchHHHHHHHHHHHcCCCHHHHHHH
Q 028894 109 LIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEE 140 (202)
Q Consensus 109 lVHC~~G~~RTG~vva~~l~~~gws~~~a~~e 140 (202)
..||.+. ++.|-++.++.++.|.+..+|++.
T Consensus 23 ~~~Cf~c-g~gGd~i~fv~~~~~~sf~eA~~~ 53 (55)
T smart00400 23 FFHCFGC-GAGGNVISFLMKYDKLSFVEAVKK 53 (55)
T ss_pred EEEEeCC-CCCCCHHHHHHHHHCcCHHHHHHH
Confidence 4889853 678899999999999999999875
No 107
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=55.99 E-value=48 Score=30.22 Aligned_cols=64 Identities=14% Similarity=0.034 Sum_probs=42.3
Q ss_pred hHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHH--cCCC
Q 028894 62 NLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKL--QNWC 133 (202)
Q Consensus 62 ~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~--~gws 133 (202)
..+.+.+.|++.+-| .|... -+++....+.++.+...-+-||.+||++ -||+..++|++. .|.+
T Consensus 161 ~akel~~~g~DSIci--KDmaG---lltP~~ayelVk~iK~~~~~pv~lHtH~---TsG~a~m~ylkAvEAGvD 226 (472)
T COG5016 161 LAKELLEMGVDSICI--KDMAG---LLTPYEAYELVKAIKKELPVPVELHTHA---TSGMAEMTYLKAVEAGVD 226 (472)
T ss_pred HHHHHHHcCCCEEEe--ecccc---cCChHHHHHHHHHHHHhcCCeeEEeccc---ccchHHHHHHHHHHhCcc
Confidence 344455667765554 33321 1355566677777766667999999985 578889999983 6665
No 108
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=55.92 E-value=1.1e+02 Score=27.28 Aligned_cols=70 Identities=16% Similarity=0.189 Sum_probs=44.0
Q ss_pred hHHhccCCcEEEEcCCC-CCC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q 028894 40 PFLQTLNLRSIIYLCPE-PYP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e-~~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~ 114 (202)
...++.|+...++.-.. ..+ + ...+.+.+.|+..+.++ |... .+.+.++.+.++.+.+.-+-|+-+||+.
T Consensus 123 ~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hn 197 (378)
T PRK11858 123 EYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFC--DTVG---ILDPFTMYELVKELVEAVDIPIEVHCHN 197 (378)
T ss_pred HHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEe--ccCC---CCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 45678899877775321 111 1 23344566788876665 3321 1467888888888876546789999974
No 109
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=55.62 E-value=25 Score=27.26 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=37.0
Q ss_pred eeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeec
Q 028894 28 IYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGI 78 (202)
Q Consensus 28 Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi 78 (202)
||.+-.|-..=...|...||+.|+.......+..-.+++++.||++.+++.
T Consensus 90 lYvT~ePC~~Ca~ai~~agI~~Vvy~~~~~~~~~~~~~l~~~gi~v~~~~~ 140 (151)
T TIGR02571 90 IYVTHFPCLQCTKSIIQAGIKKIYYAQDYHNHPYAIELFEQAGVELKKVPF 140 (151)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEccCCCCcHHHHHHHHHCCCEEEEeCc
Confidence 666666665556778889999999975432222346689999999999974
No 110
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=55.49 E-value=94 Score=24.19 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=45.4
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
.+.|+++|+++|.-+-..... .+.+.+ ++.+|+++...=+. ..-.+.+.... ..++|..+-|+.|-+
T Consensus 4 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~~i~~v~~rhE~--------~A~~mAdgyar---~sg~~gv~~~t~GpG 71 (162)
T cd07037 4 VEELKRLGVRDVVISPGSRSA-PLALAAAEHPEFRLHVRVDER--------SAAFFALGLAK---ASGRPVAVVCTSGTA 71 (162)
T ss_pred HHHHHHCCCCEEEECCCcchH-HHHHHHHhCCCceEEeccChH--------HHHHHHHHHHH---hhCCCEEEEECCchH
Confidence 467999999999999765332 222333 34578877643321 12223333322 245676666777777
Q ss_pred hHHHHHHHHHH
Q 028894 118 RTGCLVGCLRK 128 (202)
Q Consensus 118 RTG~vva~~l~ 128 (202)
=+.++.+++-.
T Consensus 72 ~~n~~~gl~~A 82 (162)
T cd07037 72 VANLLPAVVEA 82 (162)
T ss_pred HHHHhHHHHHH
Confidence 67766666554
No 111
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.08 E-value=1.1e+02 Score=26.84 Aligned_cols=72 Identities=13% Similarity=0.228 Sum_probs=42.1
Q ss_pred hhHHhccCCcEEEEcCCCC-CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC--CCcEEEE
Q 028894 39 FPFLQTLNLRSIIYLCPEP-YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR--NHPVLIH 111 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~-~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~--~~pVlVH 111 (202)
+...+++|.+..+++.... .+ + ...+.+.+.|...+. +.|... .+.++++.+.++.+.+.- +-|+-+|
T Consensus 121 i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~--i~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 121 IGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVY--VVDSAG---ALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEE--eCCCCC---CCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 3445677777777775321 11 1 222334555666543 333321 246788888999887643 5789999
Q ss_pred eCCC
Q 028894 112 CKRG 115 (202)
Q Consensus 112 C~~G 115 (202)
|+..
T Consensus 196 ~Hnn 199 (337)
T PRK08195 196 GHNN 199 (337)
T ss_pred eCCC
Confidence 8754
No 112
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=55.06 E-value=91 Score=28.87 Aligned_cols=82 Identities=10% Similarity=0.096 Sum_probs=48.2
Q ss_pred hhHHhccCCcEEEEcCCC--CCC-----chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 028894 39 FPFLQTLNLRSIIYLCPE--PYP-----EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIH 111 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e--~~~-----~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVH 111 (202)
++..++.|....++++-. +.. ....+.+.+.|++.+.+ .|... .+.+..+.+.++.+.+.-+-||-+|
T Consensus 138 i~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~I--kDtaG---~l~P~~v~~Lv~alk~~~~~pi~~H 212 (468)
T PRK12581 138 LRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICI--KDMAG---ILTPKAAKELVSGIKAMTNLPLIVH 212 (468)
T ss_pred HHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEE--CCCCC---CcCHHHHHHHHHHHHhccCCeEEEE
Confidence 344566777665655532 111 12233455667765444 34321 2467788888888876556889999
Q ss_pred eCCCCchHHHHHHHHHH
Q 028894 112 CKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 112 C~~G~~RTG~vva~~l~ 128 (202)
|+. ..|+.+|-++.
T Consensus 213 ~Hn---t~GlA~An~la 226 (468)
T PRK12581 213 THA---TSGISQMTYLA 226 (468)
T ss_pred eCC---CCccHHHHHHH
Confidence 974 45666666664
No 113
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=54.48 E-value=22 Score=33.86 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=31.8
Q ss_pred hhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 66 LAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 66 ~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
+++.|++|+. |++++ ..+.+.++|+.+.+ .++|++|||..=|++
T Consensus 234 f~~~G~~~~~-~vDGh-------d~~~l~~al~~ak~-~~~P~~i~~~T~KGk 277 (617)
T TIGR00204 234 FEELGFNYIG-PVDGH-------DLLELIETLKNAKK-LKGPVFLHIQTKKGK 277 (617)
T ss_pred HHHcCCcEEc-ccCCC-------CHHHHHHHHHHHhc-CCCCEEEEEEecCCC
Confidence 6778998887 88765 35778888887654 457999997554444
No 114
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=54.44 E-value=1.5e+02 Score=26.16 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=42.9
Q ss_pred hhHHhccCCcEEEEcCCCC-CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q 028894 39 FPFLQTLNLRSIIYLCPEP-YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCK 113 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~-~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~ 113 (202)
+...++.|++..+++-... .+ + ...+.+.+.|.+.+.++ |... .+.+.++.+.++.+.+.-+-|+-+||+
T Consensus 119 i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~v~l~~H~H 193 (365)
T TIGR02660 119 VSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFA--DTVG---ILDPFSTYELVRALRQAVDLPLEMHAH 193 (365)
T ss_pred HHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEc--ccCC---CCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 3455778988666653221 11 1 22334566788776554 3321 146788888888887654578889996
Q ss_pred C
Q 028894 114 R 114 (202)
Q Consensus 114 ~ 114 (202)
.
T Consensus 194 N 194 (365)
T TIGR02660 194 N 194 (365)
T ss_pred C
Confidence 4
No 115
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=54.05 E-value=20 Score=28.70 Aligned_cols=30 Identities=3% Similarity=-0.057 Sum_probs=24.4
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.++=|.|+|..|||.|....+.-+...|+-
T Consensus 20 ~~Gli~VYtGdGKGKTTAAlGlalRAaG~G 49 (178)
T PRK07414 20 IEGLVQVFTSSQRNFFTSVMAQALRIAGQG 49 (178)
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHhcCC
Confidence 467799999999999999999877764443
No 116
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=53.74 E-value=17 Score=27.43 Aligned_cols=45 Identities=7% Similarity=-0.090 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCC-CCchHHHHHHHHHHHcCCCH
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKR-GKHRTGCLVGCLRKLQNWCL 134 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~-G~~RTG~vva~~l~~~gws~ 134 (202)
.+.+.+.+..+-=..+.+|+|.|.. +.+..++.+...+...|.+.
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~ 125 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPD 125 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCC
Confidence 4566666554422357899999975 22345555566666777654
No 117
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=53.65 E-value=30 Score=33.24 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=33.1
Q ss_pred HhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCCCch
Q 028894 63 LKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRGKHR 118 (202)
Q Consensus 63 ~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G~~R 118 (202)
...+++.|..|+- |++++ +.+.+.++|+.+.+.. ++|++|||..-|++
T Consensus 276 ~~~fe~fG~~~~g-~vDGH-------d~~~l~~al~~~k~~~~~~P~vI~~~T~KGk 324 (641)
T PLN02234 276 STLFEELGFHYVG-PVDGH-------NIDDLVSILETLKSTKTIGPVLIHVVTEKGR 324 (641)
T ss_pred HHHHHHcCCEEEe-eECCC-------CHHHHHHHHHHHHhcCCCCCEEEEEEEecCC
Confidence 4567778888763 55655 4678888888776543 58999998554433
No 118
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=53.28 E-value=67 Score=27.26 Aligned_cols=81 Identities=14% Similarity=0.175 Sum_probs=49.8
Q ss_pred hhHHhccCCcEEEEcCCC-------CCC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CC
Q 028894 39 FPFLQTLNLRSIIYLCPE-------PYP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NH 106 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e-------~~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~ 106 (202)
+...++.|++..+++... ..+ + ...+.+.+.|++.+.++ |... .+.+.++.+.++.+.+.- +-
T Consensus 120 v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~ 194 (274)
T cd07938 120 AELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLG--DTIG---VATPAQVRRLLEAVLERFPDE 194 (274)
T ss_pred HHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEEC--CCCC---ccCHHHHHHHHHHHHHHCCCC
Confidence 456788999988877632 111 1 23344566788766554 3321 146788888888887643 47
Q ss_pred cEEEEeCCCCchHHHHHHHHH
Q 028894 107 PVLIHCKRGKHRTGCLVGCLR 127 (202)
Q Consensus 107 pVlVHC~~G~~RTG~vva~~l 127 (202)
|+-+||+. ..|+.+|-.+
T Consensus 195 ~i~~H~Hn---d~GlA~AN~l 212 (274)
T cd07938 195 KLALHFHD---TRGQALANIL 212 (274)
T ss_pred eEEEEECC---CCChHHHHHH
Confidence 89999974 3455444444
No 119
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=52.85 E-value=1.3e+02 Score=24.93 Aligned_cols=71 Identities=11% Similarity=0.050 Sum_probs=43.5
Q ss_pred hHHhccCCcEEEEcCCCC-CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q 028894 40 PFLQTLNLRSIIYLCPEP-YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~-~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~ 114 (202)
...++.|+...+++-... .+ + ...+.+.+.|++.+.+ .|... .+.++++.+.++.+.+.-+-|+-+||+.
T Consensus 117 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l--~DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~Hn 191 (259)
T cd07939 117 GRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF--ADTVG---ILDPFTTYELIRRLRAATDLPLEFHAHN 191 (259)
T ss_pred HHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe--CCCCC---CCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 355778988777764321 11 2 2233445678876555 44321 1467888888888876544688899874
Q ss_pred C
Q 028894 115 G 115 (202)
Q Consensus 115 G 115 (202)
-
T Consensus 192 ~ 192 (259)
T cd07939 192 D 192 (259)
T ss_pred C
Confidence 3
No 120
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=52.51 E-value=26 Score=25.04 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=15.9
Q ss_pred CCCcEEEEeCCCCchHHHHHHHH
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCL 126 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~ 126 (202)
.+.+|+|||..+..|+...+..+
T Consensus 61 ~~~~iv~yC~~~~~r~~~aa~~l 83 (113)
T cd01531 61 KKDTVVFHCALSQVRGPSAARKF 83 (113)
T ss_pred CCCeEEEEeecCCcchHHHHHHH
Confidence 46799999985545776655444
No 121
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=52.10 E-value=15 Score=32.36 Aligned_cols=84 Identities=17% Similarity=0.185 Sum_probs=51.1
Q ss_pred eeecCCCCCCChhHH----hccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCC------------CC----CC
Q 028894 28 IYRSSFPQSSNFPFL----QTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTE------------PP----VS 87 (202)
Q Consensus 28 Lyrs~~p~~~~~~~L----~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~------------p~----~~ 87 (202)
+|+.-....+++..| +++||..+-+.- +....+++.+.|+..+.|+-.+... |- --
T Consensus 67 ~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpf----d~~svd~l~~~~v~~~KIaS~~~~n~pLL~~~A~~gkPvilStGm 142 (329)
T TIGR03569 67 MLKKLELSEEDHRELKEYCESKGIEFLSTPF----DLESADFLEDLGVPRFKIPSGEITNAPLLKKIARFGKPVILSTGM 142 (329)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcEEEEeC----CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHhcCCcEEEECCC
Confidence 344433334445444 456766655543 3345567778888888888765421 10 00
Q ss_pred CCHHHHHHHHHHHHhCCCC---cEEEEeCCC
Q 028894 88 IPKDTIMEALKILIDVRNH---PVLIHCKRG 115 (202)
Q Consensus 88 ~~~~~i~~~l~~i~~~~~~---pVlVHC~~G 115 (202)
.+.+.+..+++.+.+..+. -++.||..+
T Consensus 143 atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~ 173 (329)
T TIGR03569 143 ATLEEIEAAVGVLRDAGTPDSNITLLHCTTE 173 (329)
T ss_pred CCHHHHHHHHHHHHHcCCCcCcEEEEEECCC
Confidence 2567889999999764432 689999876
No 122
>PRK09389 (R)-citramalate synthase; Provisional
Probab=51.84 E-value=1.2e+02 Score=28.02 Aligned_cols=70 Identities=17% Similarity=0.138 Sum_probs=43.7
Q ss_pred hHHhccCCcEEEEcCCCCC-C-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q 028894 40 PFLQTLNLRSIIYLCPEPY-P-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~-~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~ 114 (202)
..+++.|++..+++-.... + + ...+.+.+.|.+.+.+|=.-.. ..+.++.+.++.+.+..+-|+-+||+.
T Consensus 121 ~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DTvG~-----~~P~~~~~lv~~l~~~~~v~l~~H~HN 195 (488)
T PRK09389 121 EYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICFCDTVGI-----LTPEKTYELFKRLSELVKGPVSIHCHN 195 (488)
T ss_pred HHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEEecCCCC-----cCHHHHHHHHHHHHhhcCCeEEEEecC
Confidence 5567889887777643211 1 1 2223445678887766542221 356788888888876556789999974
No 123
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=51.72 E-value=1.1e+02 Score=26.72 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=39.2
Q ss_pred hHHhccCCcEEEEcCCCC-CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC--CCcEEEEe
Q 028894 40 PFLQTLNLRSIIYLCPEP-YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR--NHPVLIHC 112 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~-~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~--~~pVlVHC 112 (202)
+..+++|....+++.... .+ + ...+.+.+.|...+.+ .|... .+.++++.+.++.+.+.- .-|+-+||
T Consensus 121 ~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i--~DT~G---~~~P~~v~~~v~~l~~~l~~~i~ig~H~ 195 (333)
T TIGR03217 121 GMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYI--VDSAG---AMLPDDVRDRVRALKAVLKPETQVGFHA 195 (333)
T ss_pred HHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEE--ccCCC---CCCHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 445566666666664321 11 1 1222334455554433 33221 246788888888887643 36899999
Q ss_pred CCCC
Q 028894 113 KRGK 116 (202)
Q Consensus 113 ~~G~ 116 (202)
+...
T Consensus 196 Hnnl 199 (333)
T TIGR03217 196 HHNL 199 (333)
T ss_pred CCCC
Confidence 8543
No 124
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=51.66 E-value=34 Score=30.33 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=46.4
Q ss_pred EEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHH
Q 028894 49 SIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGC 121 (202)
Q Consensus 49 tVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~ 121 (202)
-+|-. ++...-...+.+.-.|+....||.+++. .+..+.+.+.++....+...|++|-+++|---||.
T Consensus 142 ~~i~~-s~~aH~S~~Kaa~~lGlg~~~I~~~~~~----~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga 209 (373)
T PF00282_consen 142 PVIYV-SEQAHYSIEKAARILGLGVRKIPTDEDG----RMDIEALEKALEKDIANGKTPFAVVATAGTTNTGA 209 (373)
T ss_dssp EEEEE-ETTS-THHHHHHHHTTSEEEEE-BBTTS----SB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSB
T ss_pred ccccc-ccccccHHHHhcceeeeEEEEecCCcch----hhhHHHhhhhhcccccccccceeeeccCCCccccc
Confidence 34444 3333346778888899999999998743 36778888888877665556889999999877775
No 125
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=51.56 E-value=70 Score=30.47 Aligned_cols=57 Identities=18% Similarity=0.233 Sum_probs=37.1
Q ss_pred hHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 64 KFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 64 ~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
+.+.+.|++.+.+ .|... .+.+..+.+.++.+.+.-+-|+-+||+. -+|+.+|-++.
T Consensus 162 ~~l~~~Gad~i~i--~Dt~G---~l~P~~~~~lv~~lk~~~~~pi~~H~Hn---t~GlA~An~la 218 (593)
T PRK14040 162 KQLEDMGVDSLCI--KDMAG---LLKPYAAYELVSRIKKRVDVPLHLHCHA---TTGLSTATLLK 218 (593)
T ss_pred HHHHHcCCCEEEE--CCCCC---CcCHHHHHHHHHHHHHhcCCeEEEEECC---CCchHHHHHHH
Confidence 3445567765544 33321 2457788888888876556899999984 56777777665
No 126
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=51.43 E-value=85 Score=26.46 Aligned_cols=71 Identities=8% Similarity=0.065 Sum_probs=44.3
Q ss_pred hHHhccCCcEEEEcCCC-CCC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q 028894 40 PFLQTLNLRSIIYLCPE-PYP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e-~~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~ 114 (202)
...++.|++..+++-.. ..+ + ...+.+.+.|+.-+. +.|... -+.++++.+.++.+.+.-+-|+-+||+.
T Consensus 119 ~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~--l~Dt~G---~~~P~~v~~~~~~~~~~~~~~i~~H~Hn 193 (262)
T cd07948 119 EFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVG--IADTVG---IATPRQVYELVRTLRGVVSCDIEFHGHN 193 (262)
T ss_pred HHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEE--ECCcCC---CCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 44567899988888422 111 1 233445667877544 444432 1467888888988876545788888874
Q ss_pred C
Q 028894 115 G 115 (202)
Q Consensus 115 G 115 (202)
-
T Consensus 194 ~ 194 (262)
T cd07948 194 D 194 (262)
T ss_pred C
Confidence 3
No 127
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=50.48 E-value=56 Score=22.07 Aligned_cols=39 Identities=15% Similarity=0.373 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNW 132 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gw 132 (202)
.+.+...+..+ ..+.+|+++|..|. |+ ..++..++..|.
T Consensus 38 ~~~~~~~~~~~--~~~~~vvl~c~~g~-~a-~~~a~~L~~~G~ 76 (90)
T cd01524 38 LDELRDRLNEL--PKDKEIIVYCAVGL-RG-YIAARILTQNGF 76 (90)
T ss_pred HHHHHHHHHhc--CCCCcEEEEcCCCh-hH-HHHHHHHHHCCC
Confidence 34444444333 35679999999874 44 344444455554
No 128
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=50.02 E-value=37 Score=28.70 Aligned_cols=44 Identities=7% Similarity=-0.092 Sum_probs=27.5
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
+.+.+.+.++.+--..+.+|+|+|..|. +.+..++..+...|..
T Consensus 71 ~~~~~~~~~~~~Gi~~d~~VVvyc~~~~-~~a~~~~~~l~~~G~~ 114 (281)
T PRK11493 71 RPETFAVAMRELGVNQDKHLVVYDEGNL-FSAPRAWWMLRTFGVE 114 (281)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEECCCCC-chHHHHHHHHHHhcCC
Confidence 3566766666553346789999998764 5444444445555654
No 129
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=49.83 E-value=52 Score=28.60 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=31.0
Q ss_pred ChhHHhccCCcEEEEcCCC----------CCCchhHhHhhhCCc-EEEEeecCCC
Q 028894 38 NFPFLQTLNLRSIIYLCPE----------PYPEENLKFLAAQNI-RLFHFGIEGK 81 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~e----------~~~~~~~~~~~~~gI-~~~~ipi~d~ 81 (202)
-+..|.+.|++.|+-+.+. +.+-..++.+++.|+ ++..+|..++
T Consensus 246 ~l~~l~~~G~~~V~v~p~gFv~D~lETl~eidie~re~~~~~G~~~~~~ip~lN~ 300 (316)
T PF00762_consen 246 VLEELAKEGVKRVVVVPPGFVSDCLETLYEIDIEYRELAEEAGGEEFVRIPCLND 300 (316)
T ss_dssp HHHHHHHCT-SEEEEEETT-SSSSHHHHCCCCCHHHHHHHHHTCCEEEE---STT
T ss_pred HHHHHHhcCCCeEEEECCccccccHhHHHHHHHHHHHHHHHcCCceEEEeCCCCC
Confidence 4788999999999999874 222345778889999 9999998764
No 130
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=49.82 E-value=1.6e+02 Score=28.20 Aligned_cols=82 Identities=16% Similarity=0.175 Sum_probs=50.1
Q ss_pred hhHHhccCCcEEEEcC--CCCCC--c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEE
Q 028894 39 FPFLQTLNLRSIIYLC--PEPYP--E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIH 111 (202)
Q Consensus 39 ~~~L~~~giktVI~L~--~e~~~--~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVH 111 (202)
+...++.|.....+++ ..+.. + ...+.+.+.|++.+.| .|... .+.+.++.+.++.+.+.-+-||-+|
T Consensus 129 i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~I--kDtaG---~l~P~~v~~lv~alk~~~~ipi~~H 203 (596)
T PRK14042 129 IDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAI--KDMAG---LLTPTVTVELYAGLKQATGLPVHLH 203 (596)
T ss_pred HHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEe--CCccc---CCCHHHHHHHHHHHHhhcCCEEEEE
Confidence 4556778877776644 22211 1 2334456678865444 44432 2467788888888876556899999
Q ss_pred eCCCCchHHHHHHHHHH
Q 028894 112 CKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 112 C~~G~~RTG~vva~~l~ 128 (202)
|+. -.|+.+|.++.
T Consensus 204 ~Hn---t~Gla~an~la 217 (596)
T PRK14042 204 SHS---TSGLASICHYE 217 (596)
T ss_pred eCC---CCCcHHHHHHH
Confidence 874 45555666554
No 131
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=49.12 E-value=60 Score=30.34 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=38.4
Q ss_pred hhHhHhhhCCc---EEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHH
Q 028894 61 ENLKFLAAQNI---RLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGC 121 (202)
Q Consensus 61 ~~~~~~~~~gI---~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~ 121 (202)
...+.+.-.|+ +...+|.+++. .+..+.+.+.++........|+.|-+++|..-||.
T Consensus 221 S~~kaa~~lglg~~~v~~vp~d~~g----~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGa 280 (522)
T TIGR03799 221 SLGKAADVLGIGRDNLIAIKTDANN----RIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGN 280 (522)
T ss_pred HHHHHHHHcCCCcccEEEEEeCCCC----cCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCC
Confidence 45566667788 78888986543 36778888877766554556777766677655664
No 132
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=48.77 E-value=1.6e+02 Score=26.10 Aligned_cols=71 Identities=11% Similarity=0.157 Sum_probs=43.6
Q ss_pred hhHHhccCCcEEEEcCCC-CCC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q 028894 39 FPFLQTLNLRSIIYLCPE-PYP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCK 113 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e-~~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~ 113 (202)
+...++.|++..+++-.. ..+ + ...+.+.+.|++.+.++ |... .+.++++.+.++.+.+.-+-|+-+||+
T Consensus 118 i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~--DT~G---~~~P~~v~~li~~l~~~~~~~l~~H~H 192 (363)
T TIGR02090 118 VEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA--DTVG---VLTPQKMEELIKKLKENVKLPISVHCH 192 (363)
T ss_pred HHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe--CCCC---ccCHHHHHHHHHHHhcccCceEEEEec
Confidence 345678899877776422 111 1 22334556788765554 3321 146788888999887654578889986
Q ss_pred C
Q 028894 114 R 114 (202)
Q Consensus 114 ~ 114 (202)
.
T Consensus 193 n 193 (363)
T TIGR02090 193 N 193 (363)
T ss_pred C
Confidence 4
No 133
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=47.37 E-value=1e+02 Score=26.22 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=49.7
Q ss_pred hhHHhccCCcEEEEcCCC--CC---Cc---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEE
Q 028894 39 FPFLQTLNLRSIIYLCPE--PY---PE---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVL 109 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e--~~---~~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVl 109 (202)
+...+++|++..+++..- ++ ++ ...+.+.+.|++.+.+ .|... ...+.++.+.++.+.+. .+-|+-
T Consensus 121 i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l--~DT~G---~~~P~~v~~l~~~l~~~~~~~~i~ 195 (280)
T cd07945 121 IEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIML--PDTLG---ILSPFETYTYISDMVKRYPNLHFD 195 (280)
T ss_pred HHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEe--cCCCC---CCCHHHHHHHHHHHHhhCCCCeEE
Confidence 345578899988888631 11 11 2333456678876555 44321 13577888888888763 346889
Q ss_pred EEeCCCCchHHHHHHHHHH
Q 028894 110 IHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 110 VHC~~G~~RTG~vva~~l~ 128 (202)
+||+.- .|+.+|-.+.
T Consensus 196 ~H~Hnd---~Gla~AN~la 211 (280)
T cd07945 196 FHAHND---YDLAVANVLA 211 (280)
T ss_pred EEeCCC---CCHHHHHHHH
Confidence 999853 4555554443
No 134
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=46.84 E-value=1.3e+02 Score=23.17 Aligned_cols=78 Identities=10% Similarity=0.034 Sum_probs=42.9
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhh-CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAA-QNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~-~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
...|+++|+++|.-+-..... .+.+.+.+ .+|+++...=+. ..-.+.+.... ..++|..+-|+.|-+
T Consensus 7 ~~~L~~~Gv~~vFgipG~~~~-~l~~al~~~~~i~~v~~rhE~--------~A~~mA~gyar---~tg~~~v~~~t~GpG 74 (164)
T cd07039 7 VETLENWGVKRVYGIPGDSIN-GLMDALRREGKIEFIQVRHEE--------AAAFAASAEAK---LTGKLGVCLGSSGPG 74 (164)
T ss_pred HHHHHHCCCCEEEEcCCCchH-HHHHHHhhcCCCeEEEeCCHH--------HHHHHHHHHHH---HhCCCEEEEECCCCc
Confidence 467899999999999865332 23333333 678887643211 11122222222 234565555666666
Q ss_pred hHHHHHHHHHH
Q 028894 118 RTGCLVGCLRK 128 (202)
Q Consensus 118 RTG~vva~~l~ 128 (202)
=+.++.++.-.
T Consensus 75 ~~n~~~~l~~A 85 (164)
T cd07039 75 AIHLLNGLYDA 85 (164)
T ss_pred HHHHHHHHHHH
Confidence 66666666543
No 135
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=46.78 E-value=38 Score=32.49 Aligned_cols=47 Identities=19% Similarity=0.355 Sum_probs=32.9
Q ss_pred hHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 64 KFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 64 ~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
..+++.|.+|+. |++++ +.+++.++|+...+..++|++|||..=|++
T Consensus 240 ~~f~a~G~~~~~-~vdGh-------d~~~l~~al~~ak~~~~~P~~I~~~T~kGk 286 (641)
T PRK12571 240 TLFEELGFTYVG-PIDGH-------DMEALLSVLRAARARADGPVLVHVVTEKGR 286 (641)
T ss_pred hHHHHcCCEEEC-ccCCC-------CHHHHHHHHHHHHhCCCCCEEEEEEecCcc
Confidence 466778888773 45554 367888888877654578999998655444
No 136
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=46.10 E-value=1.1e+02 Score=26.68 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHh----CCCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 028894 90 KDTIMEALKILID----VRNHPVLIHCKRGKHRTGCLVGCLRKLQNW 132 (202)
Q Consensus 90 ~~~i~~~l~~i~~----~~~~pVlVHC~~G~~RTG~vva~~l~~~gw 132 (202)
.+.++++...+.+ ..+++|.+.|++|. |-=-.++.+ +..|.
T Consensus 153 ~~tFrefP~~v~~~~~~~~~KkVvmyCTGGI-RCEKas~~m-~~~GF 197 (308)
T COG1054 153 IETFREFPAWVEENLDLLKDKKVVMYCTGGI-RCEKASAWM-KENGF 197 (308)
T ss_pred hhhhhhhHHHHHHHHHhccCCcEEEEcCCce-eehhhHHHH-HHhcc
Confidence 3455555554443 35789999999998 766554444 34444
No 137
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=46.06 E-value=13 Score=26.71 Aligned_cols=11 Identities=36% Similarity=0.830 Sum_probs=9.1
Q ss_pred CcEEEEeCCCC
Q 028894 106 HPVLIHCKRGK 116 (202)
Q Consensus 106 ~pVlVHC~~G~ 116 (202)
..|||||.-|-
T Consensus 86 ~~~yIhCsIGd 96 (97)
T PF10302_consen 86 PRIYIHCSIGD 96 (97)
T ss_pred CeEEEEEeccC
Confidence 57999999873
No 138
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=46.05 E-value=83 Score=29.91 Aligned_cols=56 Identities=18% Similarity=0.145 Sum_probs=34.5
Q ss_pred HhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 65 FLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 65 ~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.+.+.|++.+.+ .|... .+.+..+.+.++.+.+.-+-|+-+||+. -+|+.+|.++.
T Consensus 157 ~~~~~Gad~I~i--~Dt~G---~~~P~~v~~lv~~lk~~~~~pi~~H~Hn---t~Gla~An~la 212 (582)
T TIGR01108 157 ELLEMGVDSICI--KDMAG---ILTPKAAYELVSALKKRFGLPVHLHSHA---TTGMAEMALLK 212 (582)
T ss_pred HHHHcCCCEEEE--CCCCC---CcCHHHHHHHHHHHHHhCCCceEEEecC---CCCcHHHHHHH
Confidence 344556654443 33321 1456788888888876556889999874 45666666554
No 139
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=45.73 E-value=85 Score=26.84 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=42.6
Q ss_pred hHHhccCCcEEEEcCCC---CC----C-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCc
Q 028894 40 PFLQTLNLRSIIYLCPE---PY----P-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHP 107 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e---~~----~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~p 107 (202)
...+++|++...++... ++ + + ...+.+.+.|++.+.+ .|... ...+.++.+.++.+.+.- +-|
T Consensus 127 ~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l--~DT~G---~~~P~~v~~lv~~l~~~~~~~~ 201 (287)
T PRK05692 127 EAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISL--GDTIG---VGTPGQVRAVLEAVLAEFPAER 201 (287)
T ss_pred HHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe--ccccC---ccCHHHHHHHHHHHHHhCCCCe
Confidence 44578898877655421 11 1 1 2334456778876555 44322 136788888888887643 358
Q ss_pred EEEEeCC
Q 028894 108 VLIHCKR 114 (202)
Q Consensus 108 VlVHC~~ 114 (202)
+-+||+.
T Consensus 202 i~~H~Hn 208 (287)
T PRK05692 202 LAGHFHD 208 (287)
T ss_pred EEEEecC
Confidence 9999874
No 140
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=44.87 E-value=1.6e+02 Score=26.46 Aligned_cols=77 Identities=14% Similarity=0.110 Sum_probs=42.2
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
++.|+++||++|.-+-.+... .+...+ +..+|+++...=+.. ...+.+.... ..++|..+-|+.|-+
T Consensus 7 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~~i~~v~~~hE~~--------A~~mAdgyar---~tg~~gv~~~t~GpG 74 (432)
T TIGR00173 7 VEELVRLGVRHVVISPGSRST-PLALAAAEHPRLRVHVHIDERS--------AGFFALGLAK---ASGRPVAVVCTSGTA 74 (432)
T ss_pred HHHHHHcCCCEEEECCCcccH-HHHHHHHhCCCcEEEEecCCcc--------HHHHHHHHHh---ccCCCEEEEECCcch
Confidence 467999999999999876332 233333 335788877543321 2222222221 134455555555555
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=|.++.+++-
T Consensus 75 ~~N~l~gl~~ 84 (432)
T TIGR00173 75 VANLLPAVIE 84 (432)
T ss_pred HhhhhHHHHH
Confidence 5555555543
No 141
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.32 E-value=1.2e+02 Score=24.41 Aligned_cols=70 Identities=6% Similarity=-0.053 Sum_probs=35.6
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G 115 (202)
...|.+.|.+.++.-+.++..+...+.+.+.+-+...+..+-. ..+.+.++++.+.+. ..--++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~ag~ 94 (262)
T PRK13394 24 ALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVT-------NEDAVNAGIDKVAERFGSVDILVSNAGI 94 (262)
T ss_pred HHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 3556778887665555432111222223334434333333211 345666666666543 223489999864
No 142
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=42.82 E-value=1.1e+02 Score=29.04 Aligned_cols=56 Identities=16% Similarity=0.110 Sum_probs=35.1
Q ss_pred HhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 65 FLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 65 ~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.+.+.|++.+.+ .|... .+.+.++.+.++.+.+.-+-|+-+||+. -+|+.+|-++.
T Consensus 162 ~l~~~Gad~I~i--~Dt~G---~~~P~~~~~lv~~lk~~~~~pi~~H~Hn---t~Gla~An~la 217 (592)
T PRK09282 162 ELEEMGCDSICI--KDMAG---LLTPYAAYELVKALKEEVDLPVQLHSHC---TSGLAPMTYLK 217 (592)
T ss_pred HHHHcCCCEEEE--CCcCC---CcCHHHHHHHHHHHHHhCCCeEEEEEcC---CCCcHHHHHHH
Confidence 344556665443 33321 1456788888888876545889999974 45666666664
No 143
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=42.48 E-value=2e+02 Score=24.23 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=40.2
Q ss_pred hHHhccCCcEEEEcCC---CCCC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 028894 40 PFLQTLNLRSIIYLCP---EPYP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHC 112 (202)
Q Consensus 40 ~~L~~~giktVI~L~~---e~~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC 112 (202)
+..+++|++..+++.- ...+ + ...+.+.+.|+..+.+. |... .+.++++.+.++.+.+.-+-|+-+||
T Consensus 125 ~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~--DT~G---~~~P~~v~~lv~~l~~~~~~~l~~H~ 199 (275)
T cd07937 125 KAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK--DMAG---LLTPYAAYELVKALKKEVGLPIHLHT 199 (275)
T ss_pred HHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc--CCCC---CCCHHHHHHHHHHHHHhCCCeEEEEe
Confidence 3446677766665531 1111 1 22233455566655543 3221 14678888888888765457899999
Q ss_pred CCC
Q 028894 113 KRG 115 (202)
Q Consensus 113 ~~G 115 (202)
+.-
T Consensus 200 Hnd 202 (275)
T cd07937 200 HDT 202 (275)
T ss_pred cCC
Confidence 754
No 144
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.29 E-value=1.1e+02 Score=24.51 Aligned_cols=70 Identities=10% Similarity=0.007 Sum_probs=37.5
Q ss_pred hhHHhccCCcEEEEc-CCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYL-CPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L-~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~~G 115 (202)
...|.+.|.+.++.+ |..+..+...+.++..+-+...+..+-. ..+.+..+++.+.+.-+. -++|||.+.
T Consensus 21 a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 92 (250)
T PRK08063 21 ALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKANVG-------DVEKIKEMFAQIDEEFGRLDVFVNNAAS 92 (250)
T ss_pred HHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 355777898766643 4322111222333444545555554322 356777777776553222 389998754
No 145
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=42.16 E-value=1.2e+02 Score=24.66 Aligned_cols=70 Identities=6% Similarity=-0.016 Sum_probs=38.2
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G~ 116 (202)
..|.+.|.+.|+.-+.++-.+...+.++..|.+...++.+-. ..+++..+++.+.+.-+ --++|||.+..
T Consensus 28 ~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 98 (265)
T PRK07097 28 KAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCDVT-------DEDGVQAMVSQIEKEVGVIDILVNNAGII 98 (265)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 456778988666644432111222233344544444454321 45677777777665433 24899998654
No 146
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=41.84 E-value=1.7e+02 Score=22.86 Aligned_cols=60 Identities=12% Similarity=0.189 Sum_probs=32.3
Q ss_pred CchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHH-HHHHHHhCCCCcEEEEeCCCCchHHHHHH
Q 028894 59 PEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIME-ALKILIDVRNHPVLIHCKRGKHRTGCLVG 124 (202)
Q Consensus 59 ~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~-~l~~i~~~~~~pVlVHC~~G~~RTG~vva 124 (202)
.+...+.+++.|++++...++... +...+.+.+.+ +++.+ +.+.-||+|+.. ++..++-+
T Consensus 109 ~~~~~~~l~~~G~~~v~w~~~~~D--~~~~~~~~i~~~~~~~~--~~g~Iil~Hd~~--~~~~t~~~ 169 (191)
T TIGR02764 109 NKAVLKAAESLGYTVVHWSVDSRD--WKNPGVESIVDRVVKNT--KPGDIILLHASD--SAKQTVKA 169 (191)
T ss_pred CHHHHHHHHHcCCeEEEecCCCCc--cCCCCHHHHHHHHHhcC--CCCCEEEEeCCC--CcHhHHHH
Confidence 345667788899988877665332 11123444332 22222 234569999944 44444433
No 147
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=41.61 E-value=2.1e+02 Score=23.90 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=42.5
Q ss_pred hHHhccCCcEEEEcCCCC-CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC---CcEEEE
Q 028894 40 PFLQTLNLRSIIYLCPEP-YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN---HPVLIH 111 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~-~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~---~pVlVH 111 (202)
...+++|++..+++-... .+ + ...+.+.+.|+..+.+ .|... .+.++++.+.++.+.+.-+ -|+-+|
T Consensus 121 ~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l--~DT~G---~~~P~~v~~lv~~l~~~~~~~~i~l~~H 195 (268)
T cd07940 121 EYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI--PDTVG---YLTPEEFGELIKKLKENVPNIKVPISVH 195 (268)
T ss_pred HHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE--CCCCC---CCCHHHHHHHHHHHHHhCCCCceeEEEE
Confidence 345678988666654321 11 1 2233445668775544 44332 1467888889998876433 588899
Q ss_pred eCCC
Q 028894 112 CKRG 115 (202)
Q Consensus 112 C~~G 115 (202)
|+..
T Consensus 196 ~Hn~ 199 (268)
T cd07940 196 CHND 199 (268)
T ss_pred ecCC
Confidence 8754
No 148
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=40.96 E-value=93 Score=26.05 Aligned_cols=69 Identities=20% Similarity=0.334 Sum_probs=38.5
Q ss_pred hccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCC------------C----CCCCCHHHHHHHHHHHHhC-CC
Q 028894 43 QTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTE------------P----PVSIPKDTIMEALKILIDV-RN 105 (202)
Q Consensus 43 ~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~------------p----~~~~~~~~i~~~l~~i~~~-~~ 105 (202)
+++||.-+.+.-. ..-.+++.+.|+..+.|+-.+-.. | +---+.+.|.++++.+... ..
T Consensus 66 ~~~gi~f~stpfd----~~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI~~Av~~~~~~~~~ 141 (241)
T PF03102_consen 66 KELGIDFFSTPFD----EESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEIERAVEVLREAGNE 141 (241)
T ss_dssp HHTT-EEEEEE-S----HHHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHHHHHHHHHHHHCT-
T ss_pred HHcCCEEEECCCC----HHHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHHHHHHHHHHhcCCC
Confidence 5677776666542 334567777788888887654321 1 0012467889999999544 44
Q ss_pred CcEEEEeCCC
Q 028894 106 HPVLIHCKRG 115 (202)
Q Consensus 106 ~pVlVHC~~G 115 (202)
.-++.||.++
T Consensus 142 ~l~llHC~s~ 151 (241)
T PF03102_consen 142 DLVLLHCVSS 151 (241)
T ss_dssp -EEEEEE-SS
T ss_pred CEEEEecCCC
Confidence 5699999876
No 149
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=40.82 E-value=47 Score=28.65 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=15.5
Q ss_pred cEEEEeCCCCchHHHHHHHH
Q 028894 107 PVLIHCKRGKHRTGCLVGCL 126 (202)
Q Consensus 107 pVlVHC~~G~~RTG~vva~~ 126 (202)
.|-|=|++|++||-.++=.+
T Consensus 244 tIaiGCTGG~HRSV~iae~L 263 (284)
T PF03668_consen 244 TIAIGCTGGQHRSVAIAERL 263 (284)
T ss_pred EEEEEcCCCcCcHHHHHHHH
Confidence 47788999999997766443
No 150
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=40.62 E-value=2.2e+02 Score=23.88 Aligned_cols=78 Identities=13% Similarity=0.293 Sum_probs=42.7
Q ss_pred CcEEEEcCCCCCCc-----------hhHhHhhhCCcEEEEeecCCCCCCCCCCCHH-H---HHHHHHHHHhCCCCcEEEE
Q 028894 47 LRSIIYLCPEPYPE-----------ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKD-T---IMEALKILIDVRNHPVLIH 111 (202)
Q Consensus 47 iktVI~L~~e~~~~-----------~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~-~---i~~~l~~i~~~~~~pVlVH 111 (202)
|--|||++|+.+++ .......+.|.+++.+...........++.+ . +..+++.+.+.-+-||-||
T Consensus 2 imgilN~tpdSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD 81 (257)
T TIGR01496 2 IMGIVNVTPDSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD 81 (257)
T ss_pred EEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence 34689999875432 1111234568999998654332111123322 3 5555565544336788888
Q ss_pred eCCCCchHHHHHHHHHH
Q 028894 112 CKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 112 C~~G~~RTG~vva~~l~ 128 (202)
.. ++.++-+++..
T Consensus 82 T~----~~~vi~~al~~ 94 (257)
T TIGR01496 82 TY----RAEVARAALEA 94 (257)
T ss_pred CC----CHHHHHHHHHc
Confidence 64 46666666643
No 151
>PRK08862 short chain dehydrogenase; Provisional
Probab=40.18 E-value=1.1e+02 Score=24.68 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=38.0
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC--CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN--HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~--~pVlVHC~~G 115 (202)
..|.+.|.+.++.=|.+.-.+...+.+++.+.+...+.++.. ..+++..+++.+.+.-+ --++|||.++
T Consensus 23 ~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 23 CHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQLKDF-------SQESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEEccCC-------CHHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 446778988666544321111222223344545444555432 45778888887765423 3499999864
No 152
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=40.15 E-value=53 Score=28.35 Aligned_cols=40 Identities=10% Similarity=0.203 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcC
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQN 131 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~g 131 (202)
++.+...+..-.=..+.||++-|..|. |+.+++.-+-..|
T Consensus 221 ~edl~~~f~~~~l~~~~p~~~sC~~Gi--sa~~i~~al~r~g 260 (286)
T KOG1529|consen 221 AEDLKHLFAQKGLKLSKPVIVSCGTGI--SASIIALALERSG 260 (286)
T ss_pred HHHHHHHHHhcCcccCCCEEEeeccch--hHHHHHHHHHhcC
Confidence 455555554332235899999999987 5555555444445
No 153
>PRK05867 short chain dehydrogenase; Provisional
Probab=39.78 E-value=1.1e+02 Score=24.60 Aligned_cols=70 Identities=4% Similarity=-0.131 Sum_probs=37.0
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
...|.+.|.+.|+.-+..+-.+...+.++..+-+...+.++-. ..+.+.++++.+.+.. .--++|||.+.
T Consensus 26 a~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~id~lv~~ag~ 96 (253)
T PRK05867 26 ALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCDVS-------QHQQVTSMLDQVTAELGGIDIAVCNAGI 96 (253)
T ss_pred HHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 3557788988666655432111222223333434333333211 3567777777766532 23499999754
No 154
>PF01807 zf-CHC2: CHC2 zinc finger; InterPro: IPR002694 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents CycHisCysCys (CHC2) type zinc finger domains, which are found in bacteria and viruses. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0003896 DNA primase activity, 0008270 zinc ion binding, 0006260 DNA replication; PDB: 1D0Q_B 2AU3_A.
Probab=39.54 E-value=46 Score=23.58 Aligned_cols=36 Identities=8% Similarity=0.086 Sum_probs=25.9
Q ss_pred EEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 028894 109 LIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFA 145 (202)
Q Consensus 109 lVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~ 145 (202)
..||.+ -+..|-++.++....|.+..+|++......
T Consensus 54 ~~~Cf~-Cg~~Gd~i~~v~~~~~~~f~eAv~~l~~~~ 89 (97)
T PF01807_consen 54 RFKCFG-CGKGGDVIDFVMKYEGCSFKEAVKWLAEEF 89 (97)
T ss_dssp EEEETT-T--EE-HHHHHHHHHT--HHHHHHHHHHHH
T ss_pred eEEECC-CCCCCcHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 699996 578999999998899999999998776543
No 155
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=39.46 E-value=45 Score=28.86 Aligned_cols=48 Identities=17% Similarity=0.176 Sum_probs=32.2
Q ss_pred HHHHHHhCCCCcE--EEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 028894 96 ALKILIDVRNHPV--LIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHFA 145 (202)
Q Consensus 96 ~l~~i~~~~~~pV--lVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~~ 145 (202)
+|+.|.+..+.|+ ++++-+|-+ ||.++|+.+.. |++.+++.+-|....
T Consensus 17 vL~~le~~~g~~i~~~fD~i~GTS-tGgiIA~~la~-g~s~~e~~~~y~~~~ 66 (312)
T cd07212 17 MLIAIEKALGRPIRELFDWIAGTS-TGGILALALLH-GKSLREARRLYLRMK 66 (312)
T ss_pred HHHHHHHHhCCCchhhccEEEeeC-hHHHHHHHHHc-CCCHHHHHHHHHHhh
Confidence 4555544335665 478888874 66566655544 999999999887754
No 156
>PLN02790 transketolase
Probab=38.94 E-value=61 Score=31.16 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=33.8
Q ss_pred hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 61 ~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
+..+.++..|++++.+ ++.. -..+.+.++++...+..++|++|||..-++
T Consensus 191 ~~~~~f~a~G~~~~~v--dgg~-----hd~~~l~~a~~~a~~~~~~P~lI~~~T~kG 240 (654)
T PLN02790 191 DVDKRYEALGWHTIWV--KNGN-----TDYDEIRAAIKEAKAVTDKPTLIKVTTTIG 240 (654)
T ss_pred hHHHHHHHcCCeEEEE--CCCC-----CCHHHHHHHHHHHHhcCCCeEEEEEEEeec
Confidence 4456778889988874 3310 035788888887765457999999965443
No 157
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=38.48 E-value=1.3e+02 Score=24.01 Aligned_cols=69 Identities=9% Similarity=-0.009 Sum_probs=36.1
Q ss_pred hHHhccCCcEEEEcCCCC-CCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCc-EEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEP-YPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHP-VLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~-~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~p-VlVHC~~G 115 (202)
..|.+.|.+.|+..+..+ ........++..+-+...++.+-. ..+.+.++++.+.+..+.+ ++|||.+.
T Consensus 20 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06947 20 VLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGDVA-------NEADVIAMFDAVQSAFGRLDALVNNAGI 90 (248)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEeccC-------CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 456677888776654321 111122223333434444454322 3466777777766533333 89999864
No 158
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=38.46 E-value=80 Score=27.20 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.+.+..+.+..-=...++|+++|..|. |+++..+.+.
T Consensus 219 ~~~~~~l~~~~gi~~~~~vI~yCgsG~--~As~~~~al~ 255 (285)
T COG2897 219 PEEIARLYADAGIDPDKEVIVYCGSGV--RASVTWLALA 255 (285)
T ss_pred HHHHHHHHHhcCCCCCCCEEEEcCCch--HHHHHHHHHH
Confidence 344444443321136789999999885 4444444444
No 159
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=38.21 E-value=24 Score=29.74 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=35.1
Q ss_pred ecCCCCCCCh-hHHhccCCcEEEEcCCC---CCCchhHhHhhhCCcEEEEe
Q 028894 30 RSSFPQSSNF-PFLQTLNLRSIIYLCPE---PYPEENLKFLAAQNIRLFHF 76 (202)
Q Consensus 30 rs~~p~~~~~-~~L~~~giktVI~L~~e---~~~~~~~~~~~~~gI~~~~i 76 (202)
+++..+..++ ++|++.+++.|||.... ..+....+.|++.||.|+++
T Consensus 48 ~~g~l~~~~l~~~l~~~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 48 HTGALDPQELREFLKRHSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred EECCCCHHHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 3445555556 78899999999999864 22345677899999999988
No 160
>PRK12937 short chain dehydrogenase; Provisional
Probab=38.09 E-value=1.5e+02 Score=23.40 Aligned_cols=69 Identities=9% Similarity=-0.014 Sum_probs=37.9
Q ss_pred hHHhccCCcEEEEcCCCCCC-chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYP-EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~-~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.++..+..+.. +...+.+...+-+...++++-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 23 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (245)
T PRK12937 23 RRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQADVA-------DAAAVTRLFDAAETAFGRIDVLVNNAGV 93 (245)
T ss_pred HHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 55778899877776654211 1122223333444444444322 35677777777765322 2389999754
No 161
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=37.97 E-value=29 Score=29.12 Aligned_cols=77 Identities=16% Similarity=0.085 Sum_probs=46.1
Q ss_pred cCCC-CCCCh-hHHhccCCcEEEEcCCC---CCCchhHhHhhhCCcEEEEeecCCCC---CCCCCCCHHHHHHHHHHHHh
Q 028894 31 SSFP-QSSNF-PFLQTLNLRSIIYLCPE---PYPEENLKFLAAQNIRLFHFGIEGKT---EPPVSIPKDTIMEALKILID 102 (202)
Q Consensus 31 s~~p-~~~~~-~~L~~~giktVI~L~~e---~~~~~~~~~~~~~gI~~~~ipi~d~~---~p~~~~~~~~i~~~l~~i~~ 102 (202)
.+.. +.+++ .+|++.+|+.|||.+-. .......+.|++.||.|+++-=+.-. .+.+ ...+.+.++.+.+.+
T Consensus 48 ~G~l~~~~~l~~~l~~~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~eR~~~~~~~~~~~-~~v~s~~~a~~~l~~ 126 (248)
T PRK08057 48 VGGFGGAEGLAAYLREEGIDLVIDATHPYAAQISANAAAACRALGIPYLRLERPSWLPQPGDRW-IEVDDIEEAAEALAP 126 (248)
T ss_pred ECCCCCHHHHHHHHHHCCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEEeCCCcCCCCCCCE-EEECCHHHHHHHhhc
Confidence 4444 54554 67889999999999853 12245677899999999887422110 0101 112345566666654
Q ss_pred CCCCcEEE
Q 028894 103 VRNHPVLI 110 (202)
Q Consensus 103 ~~~~pVlV 110 (202)
. +.|++
T Consensus 127 ~--~~vll 132 (248)
T PRK08057 127 F--RRVLL 132 (248)
T ss_pred c--CCEEE
Confidence 3 56665
No 162
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=37.45 E-value=2.7e+02 Score=25.75 Aligned_cols=38 Identities=21% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 88 IPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 88 ~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
+.+.++.+.++.+.+.-+-|+-+||+. -.|+.+|-++.
T Consensus 179 l~P~~v~~Lv~~lk~~~~vpI~~H~Hn---t~GlA~AN~la 216 (467)
T PRK14041 179 LTPKRAYELVKALKKKFGVPVEVHSHC---TTGLASLAYLA 216 (467)
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEecC---CCCcHHHHHHH
Confidence 456788888888876556899999874 34555555553
No 163
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=37.15 E-value=1.9e+02 Score=23.15 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=51.3
Q ss_pred ChhHHhccCCcEEEEcCC-CCCCchhHhHhhhCCcEEEEeec-CCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCC
Q 028894 38 NFPFLQTLNLRSIIYLCP-EPYPEENLKFLAAQNIRLFHFGI-EGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRG 115 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~-e~~~~~~~~~~~~~gI~~~~ipi-~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G 115 (202)
...+|.++|++--+-+-. +...+...+++++.++...+.|- .|.+ ....+++.+.+....+|+|.+..|
T Consensus 31 Ga~~l~~~gi~Pd~iiGDfDSi~~~~~~~~~~~~~~~~~~p~~KD~T---------D~e~Al~~~~~~~~~~i~i~Ga~G 101 (208)
T cd07995 31 GANHLLDLGIVPDLIIGDFDSISPEVLEYYKSKGVEIIHFPDEKDFT---------DFEKALKLALERGADEIVILGATG 101 (208)
T ss_pred HHHHHHHcCCCCCEEEecCcCCCHHHHHHHHhcCCeEEECCCCCCCC---------HHHHHHHHHHHcCCCEEEEEccCC
Confidence 456777777765554432 23335667778888999999998 4432 345677877765556899998888
Q ss_pred CchHHHHHH
Q 028894 116 KHRTGCLVG 124 (202)
Q Consensus 116 ~~RTG~vva 124 (202)
. |-==..|
T Consensus 102 g-R~DH~la 109 (208)
T cd07995 102 G-RLDHTLA 109 (208)
T ss_pred C-cHHHHHH
Confidence 5 7653333
No 164
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=36.92 E-value=2.5e+02 Score=26.26 Aligned_cols=77 Identities=13% Similarity=0.031 Sum_probs=45.3
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
++.|+++||++|+-+-..... .+.+.+.+.+|+++...=+ . ..-.+...... ..++|..+-|+.|-+=
T Consensus 23 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~i~~~hE-~-------~A~~~A~gyar---~tg~~gv~~~t~GPG~ 90 (571)
T PRK07710 23 IEALEKEGVEVIFGYPGGAVL-PLYDALYDCGIPHILTRHE-Q-------GAIHAAEGYAR---ISGKPGVVIATSGPGA 90 (571)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEeCCH-H-------HHHHHHHHHHH---HhCCCeEEEECCCccH
Confidence 577999999999999765332 2344455568888753111 0 11122222222 2356766667777777
Q ss_pred HHHHHHHHH
Q 028894 119 TGCLVGCLR 127 (202)
Q Consensus 119 TG~vva~~l 127 (202)
|-++.+++-
T Consensus 91 ~N~~~gl~~ 99 (571)
T PRK07710 91 TNVVTGLAD 99 (571)
T ss_pred HHHHHHHHH
Confidence 766666654
No 165
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=36.83 E-value=31 Score=21.88 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=10.7
Q ss_pred HcCCCHHHHHHHHH
Q 028894 129 LQNWCLSSVFEEYR 142 (202)
Q Consensus 129 ~~gws~~~a~~ey~ 142 (202)
..|||.+++.++|-
T Consensus 29 ~~G~s~eeI~~~yp 42 (56)
T PF04255_consen 29 AAGESPEEIAEDYP 42 (56)
T ss_dssp HTT--HHHHHHHST
T ss_pred HcCCCHHHHHHHCC
Confidence 89999999999874
No 166
>PRK08643 acetoin reductase; Validated
Probab=36.41 E-value=1.7e+02 Score=23.48 Aligned_cols=69 Identities=12% Similarity=0.092 Sum_probs=35.0
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.++.-+..+........+...+-+...+..+-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 20 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 89 (256)
T PRK08643 20 KRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKADVS-------DRDQVFAAVRQVVDTFGDLNVVVNNAGV 89 (256)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 456778887655545432111222223333333333333211 35667777777765322 3488999754
No 167
>PRK07814 short chain dehydrogenase; Provisional
Probab=36.34 E-value=1.3e+02 Score=24.49 Aligned_cols=70 Identities=9% Similarity=0.004 Sum_probs=35.2
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
...|.+.|.+.|+.-|..+..+...+.+...+-+...++++-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 27 a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (263)
T PRK07814 27 ALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLA-------HPEATAGLAGQAVEAFGRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 3556778986555545321111112222223333333333321 3567777777775532 23499999753
No 168
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=36.17 E-value=1.2e+02 Score=23.01 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCC
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNW 132 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gw 132 (202)
.+.+.+.+..+ ..+.||+|+|..|. ++..+ +..|...|.
T Consensus 36 ~~~l~~~l~~l--~~~~~vVv~c~~g~-~a~~a-a~~L~~~G~ 74 (145)
T cd01535 36 RAQLAQALEKL--PAAERYVLTCGSSL-LARFA-AADLAALTV 74 (145)
T ss_pred HHHHHHHHHhc--CCCCCEEEEeCCCh-HHHHH-HHHHHHcCC
Confidence 44555545443 25689999999863 55444 434444444
No 169
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=36.12 E-value=1.7e+02 Score=23.41 Aligned_cols=69 Identities=12% Similarity=0.080 Sum_probs=36.1
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.++--+.+...+.....+...+.+...++.+-. ..+.+.++++.+.+..+ --++|||.+.
T Consensus 18 ~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~~~id~vi~~ag~ 87 (254)
T TIGR02415 18 ERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVS-------DKDQVFSAIDQAAEKFGGFDVMVNNAGV 87 (254)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 456778886555444321111122233444544444443321 35677777777765322 3489999754
No 170
>PRK07478 short chain dehydrogenase; Provisional
Probab=36.08 E-value=1.4e+02 Score=24.00 Aligned_cols=70 Identities=1% Similarity=-0.045 Sum_probs=37.3
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~~G 115 (202)
...|.+.|.+.++.-|.++..+...+.++..+-+...++.+-. ..+.+.++++.+.+..+. -++|||.+.
T Consensus 23 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 93 (254)
T PRK07478 23 AKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVR-------DEAYAKALVALAVERFGGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3556778987665545432111222223334444444554321 356777777777653322 389999754
No 171
>PRK00915 2-isopropylmalate synthase; Validated
Probab=36.01 E-value=3.6e+02 Score=25.07 Aligned_cols=71 Identities=7% Similarity=0.024 Sum_probs=42.9
Q ss_pred hhHHhccCCcEEEEcCCCCC-C-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC----CcEE
Q 028894 39 FPFLQTLNLRSIIYLCPEPY-P-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN----HPVL 109 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~-~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~----~pVl 109 (202)
+.+++++|.+..+++-.... + + ...+.+.+.|...+.++=.-.. ..+.++.+.++.+.+.-+ -|+-
T Consensus 126 v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~-----~~P~~~~~~i~~l~~~~~~~~~v~l~ 200 (513)
T PRK00915 126 VKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTVGY-----TTPEEFGELIKTLRERVPNIDKAIIS 200 (513)
T ss_pred HHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCCCC-----CCHHHHHHHHHHHHHhCCCcccceEE
Confidence 45678899987766632211 1 1 2233456678877666532211 356788888888765422 6899
Q ss_pred EEeCC
Q 028894 110 IHCKR 114 (202)
Q Consensus 110 VHC~~ 114 (202)
+||+.
T Consensus 201 ~H~HN 205 (513)
T PRK00915 201 VHCHN 205 (513)
T ss_pred EEecC
Confidence 99974
No 172
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=35.92 E-value=1.3e+02 Score=22.63 Aligned_cols=42 Identities=17% Similarity=0.177 Sum_probs=30.7
Q ss_pred hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 028894 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHC 112 (202)
Q Consensus 61 ~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC 112 (202)
++...++..|++...+.-. +.+++.++++... ..++|.+|++
T Consensus 112 d~~~~a~a~G~~~~~v~~~---------~~~el~~al~~a~-~~~gp~vIeV 153 (153)
T PF02775_consen 112 DFAALAEAFGIKGARVTTP---------DPEELEEALREAL-ESGGPAVIEV 153 (153)
T ss_dssp GHHHHHHHTTSEEEEESCH---------SHHHHHHHHHHHH-HSSSEEEEEE
T ss_pred CHHHHHHHcCCcEEEEccC---------CHHHHHHHHHHHH-hCCCcEEEEc
Confidence 5677888899987654221 2478888888877 4789999986
No 173
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional
Probab=35.85 E-value=59 Score=28.74 Aligned_cols=25 Identities=32% Similarity=0.698 Sum_probs=18.8
Q ss_pred CCCcEEEEeCCCCchH---HHHHHHHHH
Q 028894 104 RNHPVLIHCKRGKHRT---GCLVGCLRK 128 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RT---G~vva~~l~ 128 (202)
.+..||-||.+|.-+| |++.+.++.
T Consensus 147 ~g~~ILThc~sg~lat~~~gTal~~l~~ 174 (339)
T PRK06036 147 DGDTVLTHCNAGRLACVDWGTALGVIRS 174 (339)
T ss_pred CCCEEEEecCCccccccccchHHHHHHH
Confidence 4567999999998776 466666665
No 174
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=35.75 E-value=1.4e+02 Score=24.17 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=34.8
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|.+.++.-+..+..+.....+...+.+...++++-. +.+.+.++++.+.+.. +--++|||.+.
T Consensus 30 ~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~Dl~-------d~~~i~~~~~~~~~~~~~id~vi~~ag~ 99 (259)
T PRK08213 30 EALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAADVA-------DEADIERLAEETLERFGHVDILVNNAGA 99 (259)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 456678886555444321111122223334434333444321 3567777777766532 23489999764
No 175
>PLN02449 ferrochelatase
Probab=35.29 E-value=1.6e+02 Score=27.47 Aligned_cols=44 Identities=11% Similarity=-0.034 Sum_probs=32.9
Q ss_pred ChhHHhccCCcEEEEcCCCCC----------CchhHhHhhhCCc-EEEEeecCCC
Q 028894 38 NFPFLQTLNLRSIIYLCPEPY----------PEENLKFLAAQNI-RLFHFGIEGK 81 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~e~~----------~~~~~~~~~~~gI-~~~~ipi~d~ 81 (202)
-++.|.+.|+|.|+-...... +-..++.+++.|+ +|..+|..+.
T Consensus 343 ~L~~L~~~Gvk~VlvvPigFvSDhiETL~EiDiE~re~a~e~G~~~~~rVP~LN~ 397 (485)
T PLN02449 343 TIVELGKKGVKSLLAVPISFVSEHIETLEEIDMEYRELALESGIENWGRVPALGC 397 (485)
T ss_pred HHHHHHHcCCCeEEEECCcccccchHHHHHHHHHHHHHHHHcCCceEEEcCCCCC
Confidence 467888999999998876421 1245667888999 6999998765
No 176
>PTZ00089 transketolase; Provisional
Probab=35.18 E-value=84 Score=30.28 Aligned_cols=48 Identities=21% Similarity=0.165 Sum_probs=31.6
Q ss_pred hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCC
Q 028894 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRG 115 (202)
Q Consensus 61 ~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G 115 (202)
+..+.++..|.+++. +.+++. ..+.+.++++...+..++|++|||..-
T Consensus 202 ~~~~~f~a~G~~~i~-v~dG~~------D~~~l~~a~~~a~~~~~~P~~I~~~T~ 249 (661)
T PTZ00089 202 DVEKKYEAYGWHVIE-VDNGNT------DFDGLRKAIEEAKKSKGKPKLIIVKTT 249 (661)
T ss_pred cHHHHHHhcCCcEEE-eCCCCC------CHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 445677778888887 223331 246777777776554478999998643
No 177
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=34.87 E-value=22 Score=25.27 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=18.2
Q ss_pred CCCCchHHHHHHHHHHH--cCCCHHH
Q 028894 113 KRGKHRTGCLVGCLRKL--QNWCLSS 136 (202)
Q Consensus 113 ~~G~~RTG~vva~~l~~--~gws~~~ 136 (202)
--|+||.|.++|....+ .|.+..+
T Consensus 8 V~GkDr~GIva~is~vLAe~~vNIld 33 (90)
T COG3830 8 VIGKDRVGIVAAVSRVLAEHGVNILD 33 (90)
T ss_pred EEcCCCCchhHHHHHHHHHcCCcEEE
Confidence 46999999999998874 5665433
No 178
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=34.86 E-value=36 Score=23.50 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=19.0
Q ss_pred eCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 028894 112 CKRGKHRTGCLVGCLRKLQNWCLSSVFEEYR 142 (202)
Q Consensus 112 C~~G~~RTG~vva~~l~~~gws~~~a~~ey~ 142 (202)
|-.|. |..+-..+-....|+|.++++++|-
T Consensus 25 ~I~Gt-RI~V~~Il~~l~~G~s~eeil~dyp 54 (79)
T COG2442 25 CIRGT-RIPVWDILEMLAAGESIEEILADYP 54 (79)
T ss_pred eEeCc-eecHHHHHHHHHCCCCHHHHHHhCC
Confidence 33453 4443333333359999999999985
No 179
>PF02880 PGM_PMM_III: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III; InterPro: IPR005846 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain III found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B 3UW2_A 2F7L_B 3I3W_B 2Z0F_A ....
Probab=34.72 E-value=1.7e+02 Score=20.90 Aligned_cols=80 Identities=10% Similarity=0.081 Sum_probs=50.3
Q ss_pred cEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh----CCCCcEEEEeCCCCchHHHHH
Q 028894 48 RSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILID----VRNHPVLIHCKRGKHRTGCLV 123 (202)
Q Consensus 48 ktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~----~~~~pVlVHC~~G~~RTG~vv 123 (202)
+-|.++... ....+.++++|+++++.|+- ...+.+.++...- ...+-+++. ....++-|+++
T Consensus 22 ~vv~~v~sS---~~~~~~~~~~g~~~~~t~vG----------~~~i~~~~~~~~~~~ggE~sgg~~~~-~~~~~~Dgi~a 87 (113)
T PF02880_consen 22 TVVVTVVSS---RALDKIAEKHGGKVIRTKVG----------FKNIAEKMREENAVFGGEESGGFIFP-DFSYDKDGIYA 87 (113)
T ss_dssp EEEEETTS----THHHHHHHHTTSEEEEESSS----------HHHHHHHHHHTTESEEEETTSEEEET-TTESSE-HHHH
T ss_pred EEEEeCHHH---HHHHHHHHHCCCEEEEecCC----------cHHHHHHHhhhceeEEecccCeEEec-CCCCCCcHHHH
Confidence 567777654 35677889999999998883 4455554443210 123445554 34456888888
Q ss_pred HHHHH----HcCCCHHHHHHHH
Q 028894 124 GCLRK----LQNWCLSSVFEEY 141 (202)
Q Consensus 124 a~~l~----~~gws~~~a~~ey 141 (202)
++.+. .+|.++++++++.
T Consensus 88 ~~~~l~~l~~~~~~ls~ll~~l 109 (113)
T PF02880_consen 88 ALLLLELLAEEGKTLSELLDEL 109 (113)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHH
Confidence 87665 3799999999764
No 180
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=34.67 E-value=1.8e+02 Score=23.22 Aligned_cols=69 Identities=7% Similarity=0.041 Sum_probs=34.9
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|.+.++--|.....+......+..+.+...+..+-. ..+.+.++++.+.+.. +--++|||.+.
T Consensus 22 ~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~~d~vi~~a~~ 91 (258)
T PRK12429 22 LALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVT-------DEEAINAGIDYAVETFGGVDILVNNAGI 91 (258)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 446667887655444322111222223334444444443221 3567777777765432 23488998764
No 181
>COG0276 HemH Protoheme ferro-lyase (ferrochelatase) [Coenzyme metabolism]
Probab=34.56 E-value=1e+02 Score=27.10 Aligned_cols=44 Identities=9% Similarity=-0.018 Sum_probs=31.6
Q ss_pred ChhHHhccCCcEEEEcCCCCC----------CchhHhHhhhCC-cEEEEeecCCC
Q 028894 38 NFPFLQTLNLRSIIYLCPEPY----------PEENLKFLAAQN-IRLFHFGIEGK 81 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~e~~----------~~~~~~~~~~~g-I~~~~ipi~d~ 81 (202)
-++.|.+.|+|.|+-...... .....+.+.+.| .+|.++|...+
T Consensus 248 ~l~~L~~~g~k~iiv~pigFvsDhlETL~Eid~e~~e~~~~~Gg~~y~rip~lN~ 302 (320)
T COG0276 248 LLEELGEKGVKKIIVVPIGFVSDHLETLYEIDHEYRELAEEAGGKKYVRIPCLND 302 (320)
T ss_pred HHHHHHhcCCCeEEEECCchhhhhHHHHHHHHHHHHHHHHHhCCccEEecCCCCC
Confidence 467788889999999887421 123455666776 99999999754
No 182
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=34.39 E-value=1.7e+02 Score=23.57 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=36.7
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G~ 116 (202)
..|.+.|.+.++.-|.++..+...+.++..|.+...++.+-. ..+.+.++++.+.+..+ --++|||.+..
T Consensus 28 ~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~~ 98 (255)
T PRK07523 28 EGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFDVT-------DHDAVRAAIDAFEAEIGPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEccCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence 446677987555434321111222334444555544444321 35677777777665322 23899987643
No 183
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=34.34 E-value=2.1e+02 Score=25.39 Aligned_cols=80 Identities=11% Similarity=0.036 Sum_probs=46.8
Q ss_pred hHHhccCCcEEEEcCC-----CC--CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-Cc
Q 028894 40 PFLQTLNLRSIIYLCP-----EP--YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HP 107 (202)
Q Consensus 40 ~~L~~~giktVI~L~~-----e~--~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~p 107 (202)
...+++|++..+++.. .. .+ + ...+.+.+.|++.+.+ .|... -..+.++.+.++.+.+.-+ .|
T Consensus 169 ~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l--~DT~G---~a~P~~v~~lv~~l~~~~~~~~ 243 (347)
T PLN02746 169 LAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL--GDTIG---VGTPGTVVPMLEAVMAVVPVDK 243 (347)
T ss_pred HHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe--cCCcC---CcCHHHHHHHHHHHHHhCCCCe
Confidence 3456889888766642 11 11 1 2334456678876554 44321 1357888888988876433 46
Q ss_pred EEEEeCCCCchHHHHHHHHH
Q 028894 108 VLIHCKRGKHRTGCLVGCLR 127 (202)
Q Consensus 108 VlVHC~~G~~RTG~vva~~l 127 (202)
+-+||.. ..|+.+|-.+
T Consensus 244 i~~H~Hn---d~GlA~AN~l 260 (347)
T PLN02746 244 LAVHFHD---TYGQALANIL 260 (347)
T ss_pred EEEEECC---CCChHHHHHH
Confidence 8899874 3444444444
No 184
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=34.25 E-value=1.5e+02 Score=22.93 Aligned_cols=67 Identities=21% Similarity=0.269 Sum_probs=37.8
Q ss_pred hHHhccCCcEEEEcCCC-CCC---chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcE--EEEeC
Q 028894 40 PFLQTLNLRSIIYLCPE-PYP---EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPV--LIHCK 113 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e-~~~---~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pV--lVHC~ 113 (202)
.+|.+.+-++||-+... ... ....+.+++.|.+...+..+-. ..+++.++++.+.. ..+|| +|||.
T Consensus 18 ~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~-------d~~~v~~~~~~~~~-~~~~i~gVih~a 89 (181)
T PF08659_consen 18 RWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVT-------DPEAVAAALAQLRQ-RFGPIDGVIHAA 89 (181)
T ss_dssp HHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TT-------SHHHHHHHHHTSHT-TSS-EEEEEE--
T ss_pred HHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCcc-------CHHHHHHHHHHHHh-ccCCcceeeeee
Confidence 56778888888877544 111 1233455667877777666532 46788888887754 34676 89996
Q ss_pred C
Q 028894 114 R 114 (202)
Q Consensus 114 ~ 114 (202)
.
T Consensus 90 g 90 (181)
T PF08659_consen 90 G 90 (181)
T ss_dssp -
T ss_pred e
Confidence 4
No 185
>cd06831 PLPDE_III_ODC_like_AZI Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase-like Antizyme Inhibitor. Antizyme inhibitor (AZI) is homologous to the fold type III PLP-dependent enzyme ODC but does not retain any decarboxylase activity. Like ODC, AZI is presumed to exist as a homodimer. Antizyme is a regulatory protein that binds directly to the ODC monomer to block its active site, leading to its degradation by the 26S proteasome. AZI binds to Antizyme with a higher affinity than ODC, preventing the formation of the Antizyme-ODC complex. Thus, AZI blocks the ability of Antizyme to promote ODC degradation, which leads to increased ODC enzymatic activity and polyamine levels. AZI also prevents the degradation of other proteins regulated by Antizyme, such as cyclin D1.
Probab=34.11 E-value=1.5e+02 Score=26.50 Aligned_cols=88 Identities=11% Similarity=0.119 Sum_probs=49.5
Q ss_pred eeecCCCCCCChhHHhccCCcEEEEcCCC-CCCchhHhHhhhCCcEEEEeecCCCCC-----CCCCCCHHHHHHHHHHHH
Q 028894 28 IYRSSFPQSSNFPFLQTLNLRSIIYLCPE-PYPEENLKFLAAQNIRLFHFGIEGKTE-----PPVSIPKDTIMEALKILI 101 (202)
Q Consensus 28 Lyrs~~p~~~~~~~L~~~giktVI~L~~e-~~~~~~~~~~~~~gI~~~~ipi~d~~~-----p~~~~~~~~i~~~l~~i~ 101 (202)
+|-+..-+..++.+..++|++++ ++.+. +. +...+......+ .+++...+... ....++.+++.++++.+.
T Consensus 84 if~gp~K~~~~l~~a~~~Gv~~i-~vDS~~El-~~i~~~~~~~~v-~lRi~~~~~~~~~~~~~KFGi~~~~~~~~l~~~~ 160 (394)
T cd06831 84 IYTNPCKQASQIKYAAKVGVNIM-TCDNEIEL-KKIARNHPNAKL-LLHIATEDNIGGEEMNMKFGTTLKNCRHLLECAK 160 (394)
T ss_pred EEeCCCCCHHHHHHHHHCCCCEE-EECCHHHH-HHHHHhCCCCcE-EEEEeccCCCCCCccCCCCCCCHHHHHHHHHHHH
Confidence 56666666778888888999775 45442 21 112222222222 22333332211 123466778888888777
Q ss_pred hCCCCcEEEEeCCCCch
Q 028894 102 DVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 102 ~~~~~pVlVHC~~G~~R 118 (202)
+..-..+-+||..|..-
T Consensus 161 ~~~l~~~Gih~HiGS~~ 177 (394)
T cd06831 161 ELDVQIVGVKFHVSSSC 177 (394)
T ss_pred HCCCeEEEEEEECCCCC
Confidence 64446688999888653
No 186
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=33.93 E-value=64 Score=19.11 Aligned_cols=23 Identities=17% Similarity=0.241 Sum_probs=18.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Q 028894 121 CLVGCLRKLQNWCLSSVFEEYRH 143 (202)
Q Consensus 121 ~vva~~l~~~gws~~~a~~ey~~ 143 (202)
-++.-||...+|+++.|++.|-.
T Consensus 16 ~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 16 DVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 56677888899999999998754
No 187
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=33.29 E-value=1.7e+02 Score=23.12 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=36.1
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G~ 116 (202)
..|.+.|.+-|+.-|+....+.....+...+-+...++.+-. ..+.+..+++.+.+.. +--++|||.+..
T Consensus 25 ~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (239)
T PRK07666 25 IALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATADVS-------DYEEVTAAIEQLKNELGSIDILINNAGIS 95 (239)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCccEEEEcCccc
Confidence 456778986555445432111122223333434444444322 3567777777765532 234899997653
No 188
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=33.07 E-value=81 Score=24.83 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=33.1
Q ss_pred eeecCCCCCCChhHHhccCCcEEEEcCCCC-CCchhHhHhhhCCcEEEEee
Q 028894 28 IYRSSFPQSSNFPFLQTLNLRSIIYLCPEP-YPEENLKFLAAQNIRLFHFG 77 (202)
Q Consensus 28 Lyrs~~p~~~~~~~L~~~giktVI~L~~e~-~~~~~~~~~~~~gI~~~~ip 77 (202)
||.+-.|=+.=...|...||+.||...+-. ....-.+++++.||++.+++
T Consensus 104 LYvTlePC~~Ca~aI~~~gI~rVvy~~~~~~~~~~~~~~L~~~Gi~v~~~~ 154 (168)
T PHA02588 104 MYVTASPCPDCAKAIAQSGIKKLVYCEKYDRNGPGWDDILRKSGIEVIQIP 154 (168)
T ss_pred EEEeCCCcHHHHHHHHHhCCCEEEEeeccCCCcHHHHHHHHHCCCEEEEeC
Confidence 666666655445667788999998876421 11223567888899888764
No 189
>PRK07411 hypothetical protein; Validated
Probab=32.48 E-value=53 Score=29.41 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=20.2
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.+|+|||..|. |+... +..+..+|++
T Consensus 341 ~d~~IVvyC~~G~-RS~~a-a~~L~~~G~~ 368 (390)
T PRK07411 341 NGHRLIAHCKMGG-RSAKA-LGILKEAGIE 368 (390)
T ss_pred CCCeEEEECCCCH-HHHHH-HHHHHHcCCC
Confidence 5689999999886 88664 4445566765
No 190
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=32.19 E-value=35 Score=25.62 Aligned_cols=28 Identities=25% Similarity=0.414 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHhC---CCCcEEEEeCCCC
Q 028894 89 PKDTIMEALKILIDV---RNHPVLIHCKRGK 116 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~---~~~pVlVHC~~G~ 116 (202)
+++.|.++.+.|... ..+.++|||+...
T Consensus 77 pDdaI~~va~~La~~~~~~~g~iVvHtSGa~ 107 (127)
T PF10727_consen 77 PDDAIAEVAEQLAQYGAWRPGQIVVHTSGAL 107 (127)
T ss_dssp -CCHHHHHHHHHHCC--S-TT-EEEES-SS-
T ss_pred chHHHHHHHHHHHHhccCCCCcEEEECCCCC
Confidence 345677777777653 4678999998654
No 191
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=32.14 E-value=1.4e+02 Score=19.25 Aligned_cols=27 Identities=19% Similarity=0.523 Sum_probs=17.7
Q ss_pred CCCCcEEEEeCCCCchHHHHHHHHHHHcC
Q 028894 103 VRNHPVLIHCKRGKHRTGCLVGCLRKLQN 131 (202)
Q Consensus 103 ~~~~pVlVHC~~G~~RTG~vva~~l~~~g 131 (202)
..+.+|+|+|..|. |+.. ++-.+...|
T Consensus 48 ~~~~~vv~~c~~~~-~a~~-~~~~l~~~G 74 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSAR-AAKLLRKAG 74 (89)
T ss_pred CCCCeEEEEeCCCc-hHHH-HHHHHHHhC
Confidence 46789999999974 5544 444444444
No 192
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=32.03 E-value=1.1e+02 Score=28.95 Aligned_cols=45 Identities=22% Similarity=0.377 Sum_probs=31.2
Q ss_pred hHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 64 KFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 64 ~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
..+++.|+.++. +++++ ..+.+.++++...+ .++|++|||..=++
T Consensus 201 ~~~~a~G~~~~~-v~DG~-------D~~~l~~a~~~a~~-~~gP~~i~~~T~kG 245 (581)
T PRK12315 201 NLFKAMGLDYRY-VEDGN-------DIESLIEAFKEVKD-IDHPIVLHIHTLKG 245 (581)
T ss_pred HHHHhcCCeEEE-eeCCC-------CHHHHHHHHHHHHh-CCCCEEEEEEeecC
Confidence 467888998887 45554 35677778877653 57899999854443
No 193
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=32.03 E-value=4.1e+02 Score=24.60 Aligned_cols=78 Identities=8% Similarity=-0.041 Sum_probs=45.2
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
++.|+++||++|.-+-..... .+...+.+.+|+++...=+. ..-.+...... ..++|..+-|+.|-+=
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~~al~~~~i~~v~~~hE~--------~A~~~Adgyar---~sg~~gv~~~t~GpG~ 75 (548)
T PRK08978 8 VHALRAQGVDTVFGYPGGAIM-PVYDALYDGGVEHLLCRHEQ--------GAAMAAIGYAR---ATGKVGVCIATSGPGA 75 (548)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCeEEEeccHH--------HHHHHHHHHHH---HhCCCEEEEECCCCcH
Confidence 467899999999999865332 23344455688887753211 11122222222 2356766667777666
Q ss_pred HHHHHHHHHH
Q 028894 119 TGCLVGCLRK 128 (202)
Q Consensus 119 TG~vva~~l~ 128 (202)
+.++.+++-.
T Consensus 76 ~n~~~~l~~A 85 (548)
T PRK08978 76 TNLITGLADA 85 (548)
T ss_pred HHHHHHHHHH
Confidence 7766666543
No 194
>TIGR03586 PseI pseudaminic acid synthase.
Probab=31.82 E-value=46 Score=29.19 Aligned_cols=69 Identities=19% Similarity=0.253 Sum_probs=44.4
Q ss_pred hccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCC------------CC----CCCCHHHHHHHHHHHHhCCC-
Q 028894 43 QTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTE------------PP----VSIPKDTIMEALKILIDVRN- 105 (202)
Q Consensus 43 ~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~------------p~----~~~~~~~i~~~l~~i~~~~~- 105 (202)
++.|+..+-+.-. ....+++.+.|+..+.|+-.+... |- --.+.+.+..+++.+.+..+
T Consensus 87 ~~~Gi~~~stpfd----~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~ 162 (327)
T TIGR03586 87 KELGLTIFSSPFD----ETAVDFLESLDVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCK 162 (327)
T ss_pred HHhCCcEEEccCC----HHHHHHHHHcCCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence 4567776655543 334567777888888887754321 10 00256788899999976544
Q ss_pred CcEEEEeCCC
Q 028894 106 HPVLIHCKRG 115 (202)
Q Consensus 106 ~pVlVHC~~G 115 (202)
.-+|.||..+
T Consensus 163 ~i~LlhC~s~ 172 (327)
T TIGR03586 163 DLVLLKCTSS 172 (327)
T ss_pred cEEEEecCCC
Confidence 4589999877
No 195
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=31.67 E-value=3.4e+02 Score=24.09 Aligned_cols=65 Identities=23% Similarity=0.456 Sum_probs=39.9
Q ss_pred EEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCC------------CC---CC-CCHHHHHHHHHHHHhCCCCc--EEEE
Q 028894 50 IIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTE------------PP---VS-IPKDTIMEALKILIDVRNHP--VLIH 111 (202)
Q Consensus 50 VI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~------------p~---~~-~~~~~i~~~l~~i~~~~~~p--VlVH 111 (202)
|+.+.+ +++......+...+...+.|+-.+... |. -. .+.+.+.++++++.+. +.| +|.|
T Consensus 104 i~~~SS-Pfd~~svd~l~~~~~~ayKIaS~E~~~~plik~iA~~~kPiIlSTGma~~~ei~~av~~~r~~-g~~~i~LLh 181 (347)
T COG2089 104 IIFFSS-PFDLTAVDLLESLNPPAYKIASGEINDLPLIKYIAKKGKPIILSTGMATIEEIEEAVAILREN-GNPDIALLH 181 (347)
T ss_pred eEEEec-CCCHHHHHHHHhcCCCeEEecCccccChHHHHHHHhcCCCEEEEcccccHHHHHHHHHHHHhc-CCCCeEEEE
Confidence 444543 233445667777788877777654321 10 01 1357788899998864 344 9999
Q ss_pred eCCCC
Q 028894 112 CKRGK 116 (202)
Q Consensus 112 C~~G~ 116 (202)
|+.+-
T Consensus 182 C~s~Y 186 (347)
T COG2089 182 CTSAY 186 (347)
T ss_pred ecCCC
Confidence 98764
No 196
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=31.66 E-value=3.2e+02 Score=25.49 Aligned_cols=77 Identities=8% Similarity=0.002 Sum_probs=41.6
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhh-CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAA-QNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~-~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
...|+++||++|.-+-..... .+...+.+ .+|+++...=+. ..-.+.+.... ..++|..+-|+.|-+
T Consensus 11 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~~hE~--------~A~~mAdgyar---~tg~~gv~~~t~GpG 78 (574)
T PRK06882 11 VQSLRDEGVEYVFGYPGGSVL-DIYDAIHTLGGIEHVLVRHEQ--------AAVHMADGYAR---STGKVGCVLVTSGPG 78 (574)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHhhcCCCeEEEeccHH--------HHHHHHHHHHH---hhCCCeEEEECCCcc
Confidence 467999999999998765322 23333333 478887753221 11112222221 134565555666666
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=+.++.+++-
T Consensus 79 ~~N~l~~i~~ 88 (574)
T PRK06882 79 ATNAITGIAT 88 (574)
T ss_pred HHHHHHHHHH
Confidence 6655555543
No 197
>PRK07413 hypothetical protein; Validated
Probab=31.58 E-value=66 Score=28.97 Aligned_cols=29 Identities=14% Similarity=0.078 Sum_probs=23.8
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
++-|.|||..||+.|....++.+...|.-
T Consensus 200 ~g~i~VYTG~GKGKTTAAlGlAlRA~G~G 228 (382)
T PRK07413 200 SGGIEIYTGEGKGKSTSALGKALQAIGRG 228 (382)
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHhcCC
Confidence 56699999999999999999877765444
No 198
>PRK08628 short chain dehydrogenase; Provisional
Probab=31.45 E-value=2.7e+02 Score=22.26 Aligned_cols=69 Identities=14% Similarity=-0.013 Sum_probs=36.2
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
...|.+.|.+.++.-++++.. ...+.+.+.+-+...++.+- . ..+.+..+++.+.+..+ --++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~r~~~~~-~~~~~~~~~~~~~~~~~~D~-~------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (258)
T PRK08628 24 SLRLAEEGAIPVIFGRSAPDD-EFAEELRALQPRAEFVQVDL-T------DDAQCRDAVEQTVAKFGRIDGLVNNAGV 93 (258)
T ss_pred HHHHHHcCCcEEEEcCChhhH-HHHHHHHhcCCceEEEEccC-C------CHHHHHHHHHHHHHhcCCCCEEEECCcc
Confidence 355677898877766654211 22222233333333333321 1 34567777776655332 3489999853
No 199
>PRK07454 short chain dehydrogenase; Provisional
Probab=31.40 E-value=1.8e+02 Score=23.12 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=34.1
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
...|.+.|.+.++.-|+++......+.+++.+-+...+..+-. ..+.+..+++.+.+..+ --++|||.+.
T Consensus 23 a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lv~~ag~ 93 (241)
T PRK07454 23 ALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLS-------NPEAIAPGIAELLEQFGCPDVLINNAGM 93 (241)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3556678886444434321111222223333333333333211 35677777777665322 3389999753
No 200
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=31.32 E-value=2.5e+02 Score=22.23 Aligned_cols=69 Identities=7% Similarity=0.036 Sum_probs=36.3
Q ss_pred hHHhccCCcEEEEcCCCCC-CchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPY-PEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~-~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~~G 115 (202)
..|.+.|.+.++..+..+. .+...+.+...+.+..-++++-. ..+.+.++++.+.+.-+. -++|||.+.
T Consensus 24 ~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 94 (247)
T PRK12935 24 VALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADVS-------KVEDANRLVEEAVNHFGKVDILVNNAGI 94 (247)
T ss_pred HHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4566788877665443211 11222233444544444444321 356777777777653222 389999654
No 201
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=31.25 E-value=2.1e+02 Score=23.05 Aligned_cols=69 Identities=7% Similarity=0.022 Sum_probs=36.3
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.|+.-+.++..+......+..+-+...++.+- . ..+.+.++++.+.+..+ --++|||.+.
T Consensus 29 ~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-~------~~~~i~~~~~~~~~~~~~~d~li~~ag~ 98 (255)
T PRK06113 29 ITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDI-T------SEQELSALADFALSKLGKVDILVNNAGG 98 (255)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccC-C------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 55778898776654433211112222233343444444321 1 35677777777665333 3489999865
No 202
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=31.05 E-value=66 Score=25.54 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHHHcCCCH
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCLRKLQNWCL 134 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~l~~~gws~ 134 (202)
.+-|.|+|..||+-|...+++.++..|+-.
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~ 32 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGM 32 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT-
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCC
Confidence 456889999999999999988777655443
No 203
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=30.71 E-value=2e+02 Score=26.83 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=36.9
Q ss_pred HhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC--CCcEEEEeCCCCchHHHHHHHHHH
Q 028894 63 LKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR--NHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 63 ~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~--~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.+.+.+.|++.+.+ .|... .+.+.++.+.++.+.+.- +-|+-+||+. -.|+.+|.++.
T Consensus 161 a~~l~~~Gad~I~I--kDtaG---ll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hn---t~GlA~An~la 220 (499)
T PRK12330 161 AKRLLDMGADSICI--KDMAA---LLKPQPAYDIVKGIKEACGEDTRINLHCHS---TTGVTLVSLMK 220 (499)
T ss_pred HHHHHHcCCCEEEe--CCCcc---CCCHHHHHHHHHHHHHhCCCCCeEEEEeCC---CCCcHHHHHHH
Confidence 33455667765544 34321 246778888888887653 5789999984 45666666664
No 204
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=30.37 E-value=3.9e+02 Score=24.86 Aligned_cols=39 Identities=3% Similarity=-0.113 Sum_probs=25.7
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEeec
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHFGI 78 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~ipi 78 (202)
...|+++||++|.-+-..... .+...+ +..+|+++...=
T Consensus 10 ~~~L~~~Gv~~vFgipG~~~~-~l~~~l~~~~~i~~v~~rh 49 (563)
T PRK08527 10 CEALKEEGVKVVFGYPGGAIL-NIYDEIYKQNYFKHILTRH 49 (563)
T ss_pred HHHHHHcCCCEEEECCCcchH-HHHHHHhccCCCeEEEecc
Confidence 467999999999999765332 222333 335788877543
No 205
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=30.36 E-value=2.9e+02 Score=25.68 Aligned_cols=38 Identities=13% Similarity=0.077 Sum_probs=25.7
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhh-hCCcEEEEee
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLA-AQNIRLFHFG 77 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~-~~gI~~~~ip 77 (202)
++.|+++||++|.-+-..... .+...+. ..+|+++...
T Consensus 20 ~~~L~~~GV~~vFgvpG~~~~-~l~dal~~~~~i~~i~~~ 58 (564)
T PRK08155 20 VRLLERQGIRIVTGIPGGAIL-PLYDALSQSTQIRHILAR 58 (564)
T ss_pred HHHHHHcCCCEEEeCCCcccH-HHHHHHhccCCceEEEec
Confidence 477999999999999765332 2333343 3478888754
No 206
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=30.35 E-value=1.9e+02 Score=23.04 Aligned_cols=27 Identities=30% Similarity=0.458 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGK 116 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~ 116 (202)
..+.+.++++...+ .++|.+|||..=+
T Consensus 165 d~~~l~~a~~~a~~-~~~P~~I~~~T~k 191 (195)
T cd02007 165 NIEALIKVLKEVKD-LKGPVLLHVVTKK 191 (195)
T ss_pred CHHHHHHHHHHHHh-CCCCEEEEEEEec
Confidence 34677777776654 5789998875433
No 207
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=30.24 E-value=1.4e+02 Score=24.31 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHhCC---CCcEEEEeCCCCchHHHHHHHHHH
Q 028894 91 DTIMEALKILIDVR---NHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 91 ~~i~~~l~~i~~~~---~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
+....+.+.+.+.. ..|+++|...|.|.|=++-|+...
T Consensus 17 ~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~ 57 (219)
T PF00308_consen 17 ELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANE 57 (219)
T ss_dssp HHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHH
Confidence 33444555555533 258999999999999999998654
No 208
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=30.08 E-value=1.3e+02 Score=26.34 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHhhCCCCCchH-HHHHHhccc
Q 028894 133 CLSSVFEEYRHFAGLKSRDTD-LKFMETFNV 162 (202)
Q Consensus 133 s~~~a~~ey~~~~~~~~~~~~-~~fie~f~~ 162 (202)
+..+++.+||+.-....+..| ..|++.|+-
T Consensus 200 ~~~diVq~Yr~~l~~~~N~~Nl~~fl~ayn~ 230 (326)
T KOG2931|consen 200 NNSDIVQEYRQHLGERLNPKNLALFLNAYNG 230 (326)
T ss_pred ccHHHHHHHHHHHHhcCChhHHHHHHHHhcC
Confidence 356778888887544344333 678887764
No 209
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=29.90 E-value=3e+02 Score=22.20 Aligned_cols=67 Identities=12% Similarity=-0.001 Sum_probs=37.0
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.|+.-+.+. +...+..+..+-+...+.++-. ..+.+.++++.+.+..+ --++|||.+.
T Consensus 26 ~~l~~~G~~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~iD~lv~~ag~ 93 (251)
T PRK12481 26 IGLAKAGADIVGVGVAEA--PETQAQVEALGRKFHFITADLI-------QQKDIDSIVSQAVEVMGHIDILINNAGI 93 (251)
T ss_pred HHHHHCCCEEEEecCchH--HHHHHHHHHcCCeEEEEEeCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 557788988776544321 1222333444544444444321 45677788877765322 3499999754
No 210
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=29.74 E-value=1.3e+02 Score=26.52 Aligned_cols=41 Identities=10% Similarity=0.257 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 91 DTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 91 ~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
..+.+.+..+....+.+|+++|..|. |+.. ++..+...|.+
T Consensus 43 ~~l~~~~~~~~~~~~~~IvvyC~~G~-rs~~-aa~~L~~~G~~ 83 (376)
T PRK08762 43 GFLELRIETHLPDRDREIVLICASGT-RSAH-AAATLRELGYT 83 (376)
T ss_pred HHHHHHHhhhcCCCCCeEEEEcCCCc-HHHH-HHHHHHHcCCC
Confidence 34444443332236789999999875 6654 44455555554
No 211
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=29.72 E-value=2.6e+02 Score=21.44 Aligned_cols=77 Identities=10% Similarity=0.015 Sum_probs=44.1
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhh-CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAA-QNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~-~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
.+.|+++||++|.-+-..... .+.+.+.+ .+|+++...=+. ..-.+.+....+ . +|-.+-|+.|-+
T Consensus 4 ~~~L~~~Gi~~vFg~pG~~~~-~l~~al~~~~~i~~i~~rhE~--------~A~~mA~gyar~---t-~~gv~~~t~GpG 70 (162)
T cd07038 4 LERLKQLGVKHVFGVPGDYNL-PLLDAIEENPGLRWVGNCNEL--------NAGYAADGYARV---K-GLGALVTTYGVG 70 (162)
T ss_pred HHHHHHcCCCEEEEeCCccHH-HHHHHHhhcCCceEEeeCCHH--------HHHHHHHHHHHh---h-CCEEEEEcCCcc
Confidence 467999999999999765332 23334433 378887643321 111222222222 2 365555666777
Q ss_pred hHHHHHHHHHH
Q 028894 118 RTGCLVGCLRK 128 (202)
Q Consensus 118 RTG~vva~~l~ 128 (202)
=|.++.++.-.
T Consensus 71 ~~n~~~gl~~A 81 (162)
T cd07038 71 ELSALNGIAGA 81 (162)
T ss_pred HHHHHHHHHHH
Confidence 77777777654
No 212
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=29.70 E-value=47 Score=24.65 Aligned_cols=50 Identities=16% Similarity=0.044 Sum_probs=29.6
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHH
Q 028894 93 IMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYR 142 (202)
Q Consensus 93 i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~ 142 (202)
..++.+.+.+..++||+|.-.++.++||.-..---+...=.++++.++|.
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~ 58 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP 58 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC
Confidence 34445555555678999999999888885433222222224455555543
No 213
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=29.60 E-value=3e+02 Score=26.16 Aligned_cols=66 Identities=21% Similarity=0.346 Sum_probs=37.4
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhC-CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQ-NIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGK 116 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~-gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~ 116 (202)
++.|.++|++.|+-. |..-+....-.+.++ +|+ .|+.++.. +...+. |-+. ...+.||.|-|++|-
T Consensus 15 ~eeL~r~GV~~vvic-PGSRSTPLala~~~~~~i~-~hv~~DER-------sagFfA--LGlA-Kas~rPVavi~TSGT 81 (566)
T COG1165 15 LEELARLGVRDVVIC-PGSRSTPLALAAAAHDAIT-VHVHIDER-------SAGFFA--LGLA-KASKRPVAVICTSGT 81 (566)
T ss_pred HHHHHHcCCcEEEEC-CCCCCcHHHHHHHhcCCeE-EEEecccc-------hHHHHH--Hhhh-hhcCCCEEEEEcCcc
Confidence 467899999998754 332112333344445 555 34455543 222332 2222 247899999999774
No 214
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=29.57 E-value=86 Score=22.12 Aligned_cols=27 Identities=26% Similarity=0.381 Sum_probs=19.0
Q ss_pred CCcEEEEeCCCCchHHHHHHHHHHH---cCC
Q 028894 105 NHPVLIHCKRGKHRTGCLVGCLRKL---QNW 132 (202)
Q Consensus 105 ~~pVlVHC~~G~~RTG~vva~~l~~---~gw 132 (202)
...||+-|.+|.+ |++++--.... .|+
T Consensus 3 ~~~ILl~C~~G~s-SS~l~~k~~~~~~~~gi 32 (95)
T TIGR00853 3 ETNILLLCAAGMS-TSLLVNKMNKAAEEYGV 32 (95)
T ss_pred ccEEEEECCCchh-HHHHHHHHHHHHHHCCC
Confidence 3569999999987 77766555442 555
No 215
>PRK06139 short chain dehydrogenase; Provisional
Probab=29.39 E-value=1.7e+02 Score=25.32 Aligned_cols=68 Identities=7% Similarity=-0.053 Sum_probs=39.2
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~ 114 (202)
..|.+.|.+.|+.-|.++..+...+.+++.|.+...++.+-. ..+++.++++.+.+.. .--++|||.+
T Consensus 25 ~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lVnnAG 93 (330)
T PRK06139 25 EAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVT-------DADQVKALATQAASFGGRIDVWVNNVG 93 (330)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCC-------CHHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 456778988776655432112233344555666555554321 3567877877776532 2349999964
No 216
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=29.34 E-value=3.8e+02 Score=25.19 Aligned_cols=77 Identities=10% Similarity=-0.046 Sum_probs=41.4
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
...|+++||++|.-+-..... .+.+.+ +..+|+++...=+.. .-.+.+.... ..++|-.+-|+.|-+
T Consensus 28 ~~~L~~~GV~~vFgvpG~~~~-~l~dal~~~~~i~~i~~rhE~~--------A~~~AdgYar---~tg~~gv~~~t~GpG 95 (587)
T PRK06965 28 MKALAAEGVEFIWGYPGGAVL-YIYDELYKQDKIQHVLVRHEQA--------AVHAADGYAR---ATGKVGVALVTSGPG 95 (587)
T ss_pred HHHHHHcCCCEEEecCCcchH-HHHHHHhhcCCCeEEEeCCHHH--------HHHHHHHHHH---HhCCCeEEEECCCcc
Confidence 477899999999999765332 233333 335788877533211 1111111111 134455555556666
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=|.++.++.-
T Consensus 96 ~~N~l~gl~~ 105 (587)
T PRK06965 96 VTNAVTGIAT 105 (587)
T ss_pred HHHHHHHHHH
Confidence 6665555543
No 217
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=29.20 E-value=4e+02 Score=25.19 Aligned_cols=77 Identities=10% Similarity=-0.005 Sum_probs=43.4
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhh-hCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLA-AQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~-~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
...|+++||++|.-+-..... .....+. ..+|+++...=+. ..-.+......+ .++|-.+-|+.|-+
T Consensus 38 ~~~L~~~GV~~vFgipG~~~~-~l~dal~~~~~i~~v~~rhE~--------~A~~~Adgyar~---tg~~gv~~~t~GPG 105 (612)
T PRK07789 38 VRSLEELGVDVVFGIPGGAIL-PVYDPLFDSTKVRHVLVRHEQ--------GAGHAAEGYAQA---TGRVGVCMATSGPG 105 (612)
T ss_pred HHHHHHCCCCEEEEcCCcchH-HHHHHHhccCCceEEEeccHH--------HHHHHHHHHHHH---hCCCEEEEECCCcc
Confidence 477999999999999765332 2333333 3478888853321 111222222222 34565555677766
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=|.++.+++-
T Consensus 106 ~~N~l~gl~~ 115 (612)
T PRK07789 106 ATNLVTPIAD 115 (612)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 218
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=29.15 E-value=4.2e+02 Score=24.60 Aligned_cols=77 Identities=9% Similarity=0.018 Sum_probs=41.6
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhh-hCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLA-AQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~-~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
+..|+++||++|.-+-..... .+.+.+. +.+|+++...=+.. .-.+...... ..++|..+-|+.|-+
T Consensus 8 ~~~L~~~Gv~~vFgvpG~~~~-~l~~~l~~~~~i~~i~~~hE~~--------A~~~Adgyar---~tg~~gv~~~t~GpG 75 (558)
T TIGR00118 8 IESLKDEGVKTVFGYPGGAIL-PIYDALYNDSGIEHILVRHEQG--------AAHAADGYAR---ASGKVGVVLVTSGPG 75 (558)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHhhccCCceEEEeCcHHH--------HHHHHHHHHH---HhCCCEEEEECCCCc
Confidence 467999999999998765322 2333343 46788887543211 1111111111 134555555666666
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=+-++.++.-
T Consensus 76 ~~n~l~~i~~ 85 (558)
T TIGR00118 76 ATNLVTGIAT 85 (558)
T ss_pred HHHHHHHHHH
Confidence 5655555544
No 219
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=28.93 E-value=3e+02 Score=25.55 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=42.1
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhC-CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQ-NIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~-gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
+..|+++||++|.-+-..... ...+.+.+. +|+++...=+. ..-.+...... ..++|..+-|+.|-+
T Consensus 15 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~~i~~v~~rhE~--------~A~~~Adgyar---~tg~~gv~~~t~GpG 82 (557)
T PRK08199 15 VDALRANGVERVFCVPGESYL-AVLDALHDETDIRVIVCRQEG--------GAAMMAEAYGK---LTGRPGICFVTRGPG 82 (557)
T ss_pred HHHHHHcCCCEEEeCCCcchh-HHHHHhhccCCCcEEEeccHH--------HHHHHHHHHHH---hcCCCEEEEeCCCcc
Confidence 477899999999999765332 233334333 58887753321 11122222221 234565566666666
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=+-++.+++-
T Consensus 83 ~~N~~~gi~~ 92 (557)
T PRK08199 83 ATNASIGVHT 92 (557)
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 220
>PRK07064 hypothetical protein; Provisional
Probab=28.86 E-value=4.5e+02 Score=24.25 Aligned_cols=77 Identities=12% Similarity=0.032 Sum_probs=41.0
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhh-hCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLA-AQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~-~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
+..|+++||++|.-+-..... ...+.+. ..+|+++...=+. ..-.+.+.... ..++|-.+-|+.|-+
T Consensus 10 ~~~L~~~Gv~~vFgvpG~~~~-~l~~al~~~~~i~~i~~~hE~--------~A~~~A~gyar---~tg~~~v~~~t~GpG 77 (544)
T PRK07064 10 AAFLEQCGVKTAFGVISIHNM-PILDAIGRRGKIRFVPARGEA--------GAVNMADAHAR---VSGGLGVALTSTGTG 77 (544)
T ss_pred HHHHHHcCCCEEEeCCCCcch-HHHHHHhccCCccEEeeccHH--------HHHHHHHHHHH---hcCCCeEEEeCCCCc
Confidence 467899999999988664222 2333443 3478887643221 11122222222 234455555666666
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=+.++.+++-
T Consensus 78 ~~N~~~~i~~ 87 (544)
T PRK07064 78 AGNAAGALVE 87 (544)
T ss_pred HHHHHHHHHH
Confidence 6666665443
No 221
>PRK08322 acetolactate synthase; Reviewed
Probab=28.61 E-value=4.4e+02 Score=24.33 Aligned_cols=77 Identities=14% Similarity=0.075 Sum_probs=42.9
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
+..|+++||++|.-+-..... ...+.+.+.+|+++...=+. ..-.+.+.... ..++|..+-|+.|-+=
T Consensus 8 ~~~L~~~Gv~~vFg~pG~~~~-~l~dal~~~~i~~i~~~hE~--------~A~~~A~gyar---~tg~~gv~~~t~GpG~ 75 (547)
T PRK08322 8 VKCLENEGVEYIFGIPGEENL-DLLEALRDSSIKLILTRHEQ--------GAAFMAATYGR---LTGKAGVCLSTLGPGA 75 (547)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHHhcCCcEEEeccHH--------HHHHHHHHHHH---hhCCCEEEEECCCccH
Confidence 467899999999998765332 23344456788887753321 11112222211 2345655556666666
Q ss_pred HHHHHHHHH
Q 028894 119 TGCLVGCLR 127 (202)
Q Consensus 119 TG~vva~~l 127 (202)
|.++.++.-
T Consensus 76 ~N~~~~i~~ 84 (547)
T PRK08322 76 TNLVTGVAY 84 (547)
T ss_pred hHHHHHHHH
Confidence 666655544
No 222
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=28.60 E-value=86 Score=26.96 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=15.7
Q ss_pred cEEEEeCCCCchHHHHHHHH
Q 028894 107 PVLIHCKRGKHRTGCLVGCL 126 (202)
Q Consensus 107 pVlVHC~~G~~RTG~vva~~ 126 (202)
.|.|=|++|++|+-.++=.+
T Consensus 245 TIaIGCTGGqHRSV~iae~L 264 (286)
T COG1660 245 TIAIGCTGGQHRSVYIAEQL 264 (286)
T ss_pred EEEEccCCCccchHHHHHHH
Confidence 37788999999997766544
No 223
>PRK06128 oxidoreductase; Provisional
Probab=28.57 E-value=3.1e+02 Score=22.85 Aligned_cols=69 Identities=9% Similarity=0.040 Sum_probs=37.4
Q ss_pred hHHhccCCcEEEEcCCCCCC--chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYP--EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~--~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|.+.++.-+..... +...+.++..|-+...++.+-. ..+.+.++++.+.+.. .--++|||.+.
T Consensus 73 ~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~v~~~~~~~~~~~g~iD~lV~nAg~ 144 (300)
T PRK06128 73 IAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLK-------DEAFCRQLVERAVKELGGLDILVNIAGK 144 (300)
T ss_pred HHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence 44667788777665432211 1223344445555544444321 3567777777665432 23499999864
No 224
>PRK05650 short chain dehydrogenase; Provisional
Probab=28.45 E-value=2.4e+02 Score=22.89 Aligned_cols=69 Identities=13% Similarity=-0.042 Sum_probs=35.3
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|.+.++.-+..+..+.....+...|-+...+..+- . ..+.+.++++.+.+.. .--++|||.+.
T Consensus 18 ~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~-~------~~~~~~~~~~~i~~~~~~id~lI~~ag~ 87 (270)
T PRK05650 18 LRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCDV-R------DYSQLTALAQACEEKWGGIDVIVNNAGV 87 (270)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEccC-C------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45667788766655543211112222333344444444421 1 3456777777665432 23499999654
No 225
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=28.40 E-value=2.4e+02 Score=22.97 Aligned_cols=69 Identities=13% Similarity=0.078 Sum_probs=35.3
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G 115 (202)
..|.+.|.+.++.-+.++..+...+.+...|-+...++.+-. ..+.+..+++.+.+. ..--++|||.+.
T Consensus 28 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~v~~~~~~~~~~~g~id~li~~ag~ 97 (278)
T PRK08277 28 KELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVL-------DKESLEQARQQILEDFGPCDILINGAGG 97 (278)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 456678887555444321111222223333444444444311 346677777766553 233499999764
No 226
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=28.40 E-value=2.5e+02 Score=22.66 Aligned_cols=69 Identities=4% Similarity=-0.028 Sum_probs=37.7
Q ss_pred hHHhccCCcEEEEcCCCCC-CchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCc-EEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPY-PEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHP-VLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~-~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~p-VlVHC~~G 115 (202)
..|.+.|.+.|+..+.+.. .....+.++..+-+...++.+-. ..+.+.++++.+.+.-+.+ ++|||.+.
T Consensus 25 ~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~i~~~~~~~~~~~g~id~lv~~ag~ 95 (261)
T PRK08936 25 VRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGDVT-------VESDVVNLIQTAVKEFGTLDVMINNAGI 95 (261)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEecCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4577889888887664321 11122233334444443444321 3567777777766543333 88999764
No 227
>PRK06181 short chain dehydrogenase; Provisional
Probab=28.39 E-value=2.4e+02 Score=22.72 Aligned_cols=28 Identities=4% Similarity=-0.007 Sum_probs=18.1
Q ss_pred CHHHHHHHHHHHHhCC-CCcEEEEeCCCC
Q 028894 89 PKDTIMEALKILIDVR-NHPVLIHCKRGK 116 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~-~~pVlVHC~~G~ 116 (202)
..+.+..+++.+.+.. +--++|||.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 89 (263)
T PRK06181 61 DAEACERLIEAAVARFGGIDILVNNAGIT 89 (263)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcc
Confidence 3566777777765432 335999997653
No 228
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=28.09 E-value=4.1e+02 Score=25.25 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=38.8
Q ss_pred cEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCC--CCCCC--HHHHHHHHHHHHhCC-CCc--EEEEeCCC
Q 028894 48 RSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEP--PVSIP--KDTIMEALKILIDVR-NHP--VLIHCKRG 115 (202)
Q Consensus 48 ktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p--~~~~~--~~~i~~~l~~i~~~~-~~p--VlVHC~~G 115 (202)
-.|+||+++ .+..+++.++|++.+-|.....+.. .+.+. .+.+.++++.+.+.. ..+ ++=||.+|
T Consensus 228 ~YIlDL~P~---~SlVr~lv~qG~~VflIsW~nP~~~~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GG 299 (560)
T TIGR01839 228 FYIFDLSPE---KSFVQYCLKNQLQVFIISWRNPDKAHREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGG 299 (560)
T ss_pred hheeecCCc---chHHHHHHHcCCeEEEEeCCCCChhhcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcch
Confidence 356777654 4678889999999998887543211 11111 134566666665532 233 55679876
No 229
>PRK05866 short chain dehydrogenase; Provisional
Probab=28.05 E-value=2e+02 Score=24.13 Aligned_cols=70 Identities=6% Similarity=-0.082 Sum_probs=35.7
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G~ 116 (202)
..|.+.|.+.++.-|..+..+...+.+...+.+...++.+-. ..+.+.++++.+.+.. +--++|||.++.
T Consensus 58 ~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~Dl~-------d~~~v~~~~~~~~~~~g~id~li~~AG~~ 128 (293)
T PRK05866 58 EQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCDLS-------DLDAVDALVADVEKRIGGVDILINNAGRS 128 (293)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 446677887666555432111122222333434333333211 3467777777766532 335899997654
No 230
>PRK06194 hypothetical protein; Provisional
Probab=27.80 E-value=3.2e+02 Score=22.34 Aligned_cols=70 Identities=7% Similarity=0.013 Sum_probs=36.2
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G~ 116 (202)
..|.+.|.+.++.-+..+..+...+.+...+.++..+..+-. ..+.+.++++.+.+.. +--++|||.+..
T Consensus 24 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------d~~~~~~~~~~~~~~~g~id~vi~~Ag~~ 94 (287)
T PRK06194 24 RIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVS-------DAAQVEALADAALERFGAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 456777886554433321111122223333555544444321 3567777777765532 234899998654
No 231
>PRK06701 short chain dehydrogenase; Provisional
Probab=27.58 E-value=3.6e+02 Score=22.43 Aligned_cols=69 Identities=7% Similarity=0.012 Sum_probs=36.8
Q ss_pred hHHhccCCcEEEEcCCCCC-CchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPY-PEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~-~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~~G 115 (202)
..|.+.|.+.++.-+.... .+.....++..|.+...++.+-. ..+.+.++++.+.+..+. -++|||...
T Consensus 64 ~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~i~~~~~~iD~lI~~Ag~ 134 (290)
T PRK06701 64 VLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVS-------DEAFCKDAVEETVRELGRLDILVNNAAF 134 (290)
T ss_pred HHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcc
Confidence 4566778876655444311 11222333444545444444321 356677777776653333 389999765
No 232
>PRK12435 ferrochelatase; Provisional
Probab=27.44 E-value=1e+02 Score=26.69 Aligned_cols=44 Identities=11% Similarity=-0.053 Sum_probs=30.5
Q ss_pred ChhHHhcc-CCcEEEEcCCCCCC----------chhHhHhhhCCcEEEEeecCCC
Q 028894 38 NFPFLQTL-NLRSIIYLCPEPYP----------EENLKFLAAQNIRLFHFGIEGK 81 (202)
Q Consensus 38 ~~~~L~~~-giktVI~L~~e~~~----------~~~~~~~~~~gI~~~~ipi~d~ 81 (202)
-+..|.+. |+|.|+-....... -..++.+++.|+++.++|....
T Consensus 237 ~l~~l~~~~G~k~v~vvpigFvsDhlETl~Eldie~~e~a~~~G~~~~r~~~lN~ 291 (311)
T PRK12435 237 LTRDLYEEHGYKSFIYTPVGFVAEHLEVLYDNDYECKVVTDEIGAKYYRPEMPNA 291 (311)
T ss_pred HHHHHHHhcCCceEEEECCchhhhhHHHHHHHHHHHHHHHHHcCCcEEeccCCCC
Confidence 35667666 99999888764211 1345678889999999887543
No 233
>COG4806 RhaA L-rhamnose isomerase [Carbohydrate transport and metabolism]
Probab=27.43 E-value=43 Score=29.14 Aligned_cols=25 Identities=40% Similarity=0.675 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCcEEEEeCCCCchHHH
Q 028894 94 MEALKILIDVRNHPVLIHCKRGKHRTGC 121 (202)
Q Consensus 94 ~~~l~~i~~~~~~pVlVHC~~G~~RTG~ 121 (202)
.++++.+ +.-||-+||..|.|-+|.
T Consensus 24 e~AL~~L---~~~piSmHCWQGDDv~GF 48 (419)
T COG4806 24 EEALRQL---DRLPVSMHCWQGDDVSGF 48 (419)
T ss_pred HHHHHHH---hcCceeeeeecCCccccc
Confidence 4455555 467999999999988875
No 234
>PRK05876 short chain dehydrogenase; Provisional
Probab=27.39 E-value=2.3e+02 Score=23.35 Aligned_cols=68 Identities=7% Similarity=0.043 Sum_probs=36.1
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~ 114 (202)
..|.+.|.+.|+.-+..+..+...+.++..|.+...++.+- . ..+.+.++++.+.+..+ --++|||.+
T Consensus 24 ~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~Dv-~------d~~~v~~~~~~~~~~~g~id~li~nAg 92 (275)
T PRK05876 24 TEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCDV-R------HREEVTHLADEAFRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCCC-C------CHHHHHHHHHHHHHHcCCCCEEEECCC
Confidence 55677898866655543111112223334454444444421 1 35677777777655322 248999875
No 235
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=26.93 E-value=3.3e+02 Score=21.79 Aligned_cols=65 Identities=8% Similarity=0.051 Sum_probs=36.0
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
...|.+.|.+.++..+..+ ...+.+...++.++...+. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 24 a~~l~~~G~~v~~~~~~~~---~~~~~l~~~~~~~~~~Dl~---------~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 24 AEAFLREGAKVAVLYNSAE---NEAKELREKGVFTIKCDVG---------NRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred HHHHHHCCCEEEEEeCCcH---HHHHHHHhCCCeEEEecCC---------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3556778887665444321 1222233345655444332 35677777777765332 2489999754
No 236
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=26.79 E-value=2.1e+02 Score=21.23 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhC-CCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 92 TIMEALKILIDV-RNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 92 ~i~~~l~~i~~~-~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.+..+++.+.+. .+..++++...|.|-|.+++++...
T Consensus 11 ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~ 48 (184)
T PF04851_consen 11 AIARIINSLENKKEERRVLLNAPTGSGKTIIALALILE 48 (184)
T ss_dssp HHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhc
Confidence 444555555443 3677999999999999998875444
No 237
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=26.70 E-value=3.2e+02 Score=25.69 Aligned_cols=65 Identities=17% Similarity=0.329 Sum_probs=37.2
Q ss_pred EEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCC--CCCC---CHHHHHHHHHHHHhCC-CC--cEEEEeCCCC
Q 028894 49 SIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEP--PVSI---PKDTIMEALKILIDVR-NH--PVLIHCKRGK 116 (202)
Q Consensus 49 tVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p--~~~~---~~~~i~~~l~~i~~~~-~~--pVlVHC~~G~ 116 (202)
.|.||+++ .+...++.+.|.+.+-+...+.... ...+ ..+.+.++++.+.+.. .. -++=||.+|.
T Consensus 202 yilDL~p~---~Slv~~L~~qGf~V~~iDwrgpg~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGt 274 (532)
T TIGR01838 202 YILDLRPQ---NSLVRWLVEQGHTVFVISWRNPDASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGT 274 (532)
T ss_pred eeeecccc---hHHHHHHHHCCcEEEEEECCCCCcccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcH
Confidence 45555543 3567778888988877776543321 1111 2244666777776532 22 2566898874
No 238
>COG0787 Alr Alanine racemase [Cell envelope biogenesis, outer membrane]
Probab=26.70 E-value=2.3e+02 Score=25.28 Aligned_cols=70 Identities=19% Similarity=0.125 Sum_probs=43.4
Q ss_pred hHHhccCCc--EEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 40 PFLQTLNLR--SIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 40 ~~L~~~gik--tVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
-.|++.|++ .|+-|..-..+.. .+.+.++++...- -+.+++..+.........-+|.++=-.|.+
T Consensus 67 i~LR~~gi~~~~IlvL~g~~~~~~-~~~~~~~~l~~~v------------~s~~ql~~l~~~~~~~~~l~vhLkiDTGM~ 133 (360)
T COG0787 67 IELREAGITGAPILVLEGFFPAEE-LELAAAYNLTPVV------------NSLEQLEALKNAALKNKPLKVHLKIDTGMN 133 (360)
T ss_pred HHHHHcCCCCCCEEEEcCcCChhh-HHHHHHcCCeEEE------------CCHHHHHHHHHhhhhcCceEEEEEECCCCC
Confidence 457899999 4888864322222 2566667764222 146777655555543233567777889999
Q ss_pred hHHHH
Q 028894 118 RTGCL 122 (202)
Q Consensus 118 RTG~v 122 (202)
|-|+-
T Consensus 134 RlG~~ 138 (360)
T COG0787 134 RLGLR 138 (360)
T ss_pred cCCCC
Confidence 99864
No 239
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=26.66 E-value=3.9e+02 Score=22.46 Aligned_cols=71 Identities=17% Similarity=0.119 Sum_probs=41.7
Q ss_pred hHHhccCCcEEEEcC---CC-CCC-ch---hHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEE
Q 028894 40 PFLQTLNLRSIIYLC---PE-PYP-EE---NLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLI 110 (202)
Q Consensus 40 ~~L~~~giktVI~L~---~e-~~~-~~---~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlV 110 (202)
...++.|++..++.. .. ..+ +. ..+.+.+.|++.+. +.|... ...++++.+.++.+.+.- +-|+-+
T Consensus 126 ~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~--l~DT~G---~~~P~~v~~lv~~l~~~~~~~~l~~ 200 (273)
T cd07941 126 AYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLV--LCDTNG---GTLPHEIAEIVKEVRERLPGVPLGI 200 (273)
T ss_pred HHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEE--EecCCC---CCCHHHHHHHHHHHHHhCCCCeeEE
Confidence 445788998777422 11 111 11 22333566887655 444321 146788888898887643 367888
Q ss_pred EeCCC
Q 028894 111 HCKRG 115 (202)
Q Consensus 111 HC~~G 115 (202)
||+.-
T Consensus 201 H~Hnd 205 (273)
T cd07941 201 HAHND 205 (273)
T ss_pred EecCC
Confidence 88753
No 240
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=26.61 E-value=5.3e+02 Score=24.10 Aligned_cols=71 Identities=15% Similarity=0.157 Sum_probs=42.1
Q ss_pred hhHHhccCCcEEEEcCC--CCC--C-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEE
Q 028894 39 FPFLQTLNLRSIIYLCP--EPY--P-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLI 110 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~--e~~--~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlV 110 (202)
+...+++|.+..++.-. +.+ + + ...+.+.+.|.+.+.+| |... -+.+.++.+.++.+.+.-+-|+-+
T Consensus 132 v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~--DTvG---~~~P~~v~~li~~l~~~~~v~i~~ 206 (524)
T PRK12344 132 VAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVLC--DTNG---GTLPHEVAEIVAEVRAAPGVPLGI 206 (524)
T ss_pred HHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEEc--cCCC---CcCHHHHHHHHHHHHHhcCCeEEE
Confidence 34567888876664320 111 1 1 12233466788877754 3321 135678888888886644678999
Q ss_pred EeCC
Q 028894 111 HCKR 114 (202)
Q Consensus 111 HC~~ 114 (202)
||+.
T Consensus 207 H~HN 210 (524)
T PRK12344 207 HAHN 210 (524)
T ss_pred EECC
Confidence 9974
No 241
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=26.35 E-value=3.2e+02 Score=24.71 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=43.0
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEE-eCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIH-CKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVH-C~~ 114 (202)
.+|++..-+.-|.+....+ +.....++..|++....|.-|..... +..+.+...|+.+ +.+--||.| |-+
T Consensus 112 ~fl~~~~~~~~vwis~PtW-~NH~~If~~aGl~v~~Y~Yyd~~~~~--~df~~mla~L~~a--~~~~vvLLH~CcH 182 (396)
T COG1448 112 DFLARFFPDATVWISDPTW-PNHKAIFEAAGLEVETYPYYDAETKG--LDFDGMLADLKTA--PEGSVVLLHGCCH 182 (396)
T ss_pred HHHHHhCCCceEEeCCCCc-HhHHHHHHhcCCceeeeecccccccc--ccHHHHHHHHHhC--CCCCEEEEecCCC
Confidence 5566666666566654333 34567888999999999987765321 3334444444433 356779999 543
No 242
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=26.29 E-value=3.2e+02 Score=21.35 Aligned_cols=70 Identities=9% Similarity=-0.011 Sum_probs=34.5
Q ss_pred hhHHhccCCcEEEEcC-CCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 028894 39 FPFLQTLNLRSIIYLC-PEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRGK 116 (202)
Q Consensus 39 ~~~L~~~giktVI~L~-~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G~ 116 (202)
...|.+.|.+ |+-+. .....+.....++..+.+...+..+- . ..+.+.++++.+.+. ..--++|||.+..
T Consensus 22 ~~~l~~~g~~-v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~-~------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 93 (246)
T PRK05653 22 ALRLAADGAK-VVIYDSNEEAAEALAAELRAAGGEARVLVFDV-S------DEAAVRALIEAAVEAFGALDILVNNAGIT 93 (246)
T ss_pred HHHHHHCCCE-EEEEeCChhHHHHHHHHHHhcCCceEEEEccC-C------CHHHHHHHHHHHHHHhCCCCEEEECCCcC
Confidence 3456677887 44444 32211122233344454444433321 1 245666666665443 2234899998664
No 243
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=26.22 E-value=1e+02 Score=21.07 Aligned_cols=22 Identities=23% Similarity=0.434 Sum_probs=15.5
Q ss_pred cEEEEeCCCCchHHHHHHHHHH
Q 028894 107 PVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 107 pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.|++.|.+|.+-+-++..-+..
T Consensus 2 kilvvCg~G~gtS~ml~~ki~~ 23 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLRK 23 (87)
T ss_pred EEEEECCCCccHHHHHHHHHHH
Confidence 5899999999765444555554
No 244
>PRK07677 short chain dehydrogenase; Provisional
Probab=26.21 E-value=2.6e+02 Score=22.38 Aligned_cols=70 Identities=9% Similarity=0.021 Sum_probs=33.7
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G~ 116 (202)
..|.+.|.+.|+.-|...-.+...+.+...+-+...++.+-. ..+.+.++++.+...-+ --++|||.++.
T Consensus 19 ~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~lI~~ag~~ 89 (252)
T PRK07677 19 KRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMDVR-------NPEDVQKMVEQIDEKFGRIDALINNAAGN 89 (252)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-------CHHHHHHHHHHHHHHhCCccEEEECCCCC
Confidence 446677886555444321111122223322223333333211 35667777776654322 24899998653
No 245
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=26.15 E-value=4.8e+02 Score=24.45 Aligned_cols=71 Identities=13% Similarity=0.069 Sum_probs=42.2
Q ss_pred hhHHhccCCcEEEEcCC--CC--CC-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCc-EE
Q 028894 39 FPFLQTLNLRSIIYLCP--EP--YP-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHP-VL 109 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~--e~--~~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~p-Vl 109 (202)
..+++++|.+..++... +. .+ + ...+.+.+.|.+.+.++ |... -..+.++.+.++.+.+.-+.+ +=
T Consensus 128 v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~--DTvG---~~~P~~v~~li~~l~~~~~~~~i~ 202 (526)
T TIGR00977 128 VAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLC--DTNG---GTLPHEISEITTKVKRSLKQPQLG 202 (526)
T ss_pred HHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEe--cCCC---CcCHHHHHHHHHHHHHhCCCCEEE
Confidence 34567888876554331 11 11 1 23334566799888877 3221 135678888888887643344 88
Q ss_pred EEeCC
Q 028894 110 IHCKR 114 (202)
Q Consensus 110 VHC~~ 114 (202)
+||+.
T Consensus 203 vH~HN 207 (526)
T TIGR00977 203 IHAHN 207 (526)
T ss_pred EEECC
Confidence 99963
No 246
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional
Probab=26.04 E-value=1.1e+02 Score=26.93 Aligned_cols=25 Identities=24% Similarity=0.486 Sum_probs=18.6
Q ss_pred CCCcEEEEeCCCCchH---HHHHHHHHH
Q 028894 104 RNHPVLIHCKRGKHRT---GCLVGCLRK 128 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RT---G~vva~~l~ 128 (202)
.+..||-||.+|.-.| |++.+.++.
T Consensus 136 ~g~~ILThcnsg~la~~~~gTal~~l~~ 163 (329)
T PRK06371 136 NGARILTHCNAGALAVVDWGTALAPIRI 163 (329)
T ss_pred CCCEEEEeCCCCcceeccchhHHHHHHH
Confidence 4567999999987554 677777665
No 247
>PRK08617 acetolactate synthase; Reviewed
Probab=26.02 E-value=3.5e+02 Score=25.05 Aligned_cols=39 Identities=8% Similarity=-0.041 Sum_probs=27.2
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeec
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGI 78 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi 78 (202)
++.|+++||++|.-+-..... .....+.+.+|+++...=
T Consensus 12 ~~~L~~~GV~~vFg~pG~~~~-~l~~al~~~~i~~i~~~h 50 (552)
T PRK08617 12 VDSLINQGVKYVFGIPGAKID-RVFDALEDSGPELIVTRH 50 (552)
T ss_pred HHHHHHcCCCEEEeCCCccHH-HHHHHHhhCCCCEEEecc
Confidence 467899999999999876332 233444556888887543
No 248
>PRK12939 short chain dehydrogenase; Provisional
Probab=25.91 E-value=3e+02 Score=21.72 Aligned_cols=70 Identities=9% Similarity=-0.091 Sum_probs=33.9
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G~ 116 (202)
..|.+.|.+.++.-+.++......+.++..+.+..-++++-. ..+.+..+++.+.+. .+--++|||.+..
T Consensus 25 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~~ 95 (250)
T PRK12939 25 EALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAADLA-------DPASVQRFFDAAAAALGGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 456678887555433321111122223333333333333211 356677777766543 2334899998653
No 249
>PRK06138 short chain dehydrogenase; Provisional
Probab=25.80 E-value=3.1e+02 Score=21.69 Aligned_cols=68 Identities=10% Similarity=0.005 Sum_probs=34.0
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|-+.++.-|..+.......... .+.+...++.+-. ..+.+.++++.+.+.. .--++|||.+.
T Consensus 23 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D~~-------~~~~~~~~~~~i~~~~~~id~vi~~ag~ 91 (252)
T PRK06138 23 KLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGDVG-------SAEAVEALVDFVAARWGRLDVLVNNAGF 91 (252)
T ss_pred HHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 4466678776655554321111111111 2333333333211 3567777777776532 23489999864
No 250
>cd01310 TatD_DNAse TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.
Probab=25.64 E-value=1.4e+02 Score=23.83 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCC
Q 028894 93 IMEALKILIDVRNHPVLIHCKRG 115 (202)
Q Consensus 93 i~~~l~~i~~~~~~pVlVHC~~G 115 (202)
+...++... ..+.||.+||..+
T Consensus 110 ~~~~~~~a~-e~~~pv~iH~~~~ 131 (251)
T cd01310 110 FRAQLELAK-ELNLPVVIHSRDA 131 (251)
T ss_pred HHHHHHHHH-HhCCCeEEEeeCc
Confidence 344444443 3689999999865
No 251
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=25.50 E-value=1.1e+02 Score=26.17 Aligned_cols=17 Identities=29% Similarity=0.681 Sum_probs=13.7
Q ss_pred EEEEeCCCCchHHHHHH
Q 028894 108 VLIHCKRGKHRTGCLVG 124 (202)
Q Consensus 108 VlVHC~~G~~RTG~vva 124 (202)
|-|=|++|++||=.++=
T Consensus 248 i~igCtGG~HRSV~~~e 264 (288)
T PRK05416 248 IAIGCTGGQHRSVAIAE 264 (288)
T ss_pred EEEecCCCcccHHHHHH
Confidence 77889999999865543
No 252
>PRK10318 hypothetical protein; Provisional
Probab=25.45 E-value=82 Score=23.65 Aligned_cols=28 Identities=7% Similarity=0.273 Sum_probs=20.5
Q ss_pred HHHHHHHHHhC---CCCcEEEEeCCCCchHH
Q 028894 93 IMEALKILIDV---RNHPVLIHCKRGKHRTG 120 (202)
Q Consensus 93 i~~~l~~i~~~---~~~pVlVHC~~G~~RTG 120 (202)
..++++.+..+ .++|-.|+|..|..+|.
T Consensus 73 aE~FI~~~ASkSs~SGkpY~V~c~~~~~~~S 103 (121)
T PRK10318 73 AEQFIDKVASSSSISGKPYIVKCPGKSDENA 103 (121)
T ss_pred HHHHHHHHhhhcccCCCCeEEEcCCCCcccH
Confidence 34566666653 58999999999986553
No 253
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=25.39 E-value=1.9e+02 Score=21.90 Aligned_cols=69 Identities=17% Similarity=0.277 Sum_probs=31.4
Q ss_pred ccCCcEEEEcCCCCC-C--chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHH
Q 028894 44 TLNLRSIIYLCPEPY-P--EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTG 120 (202)
Q Consensus 44 ~~giktVI~L~~e~~-~--~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG 120 (202)
..|+.++|++-.+.- . +-..-+.++...+.+-+-+++-. ..+.+.++++... ..+||++ ++.|..-.|
T Consensus 25 g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly~E~~~------d~~~f~~~~~~a~--~~KPVv~-lk~Grt~~g 95 (138)
T PF13607_consen 25 GIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLYLEGIG------DGRRFLEAARRAA--RRKPVVV-LKAGRTEAG 95 (138)
T ss_dssp T-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEEES--S-------HHHHHHHHHHHC--CCS-EEE-EE-------
T ss_pred CCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEEccCCC------CHHHHHHHHHHHh--cCCCEEE-EeCCCchhh
Confidence 368999999987631 1 22233445567888888887643 2455555555553 3499977 677754444
Q ss_pred H
Q 028894 121 C 121 (202)
Q Consensus 121 ~ 121 (202)
.
T Consensus 96 ~ 96 (138)
T PF13607_consen 96 A 96 (138)
T ss_dssp -
T ss_pred h
Confidence 3
No 254
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=25.22 E-value=2e+02 Score=23.76 Aligned_cols=49 Identities=22% Similarity=0.281 Sum_probs=31.7
Q ss_pred hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 61 ~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
+....++..|.+++.+ ++. ..+.+.++++...+..++|++|+|..-+++
T Consensus 182 ~~~~~~~a~G~~~~~v--~G~-------d~~~l~~al~~a~~~~~~P~~I~~~t~kg~ 230 (255)
T cd02012 182 DLAKKFEAFGWNVIEV--DGH-------DVEEILAALEEAKKSKGKPTLIIAKTIKGK 230 (255)
T ss_pred hHHHHHHHcCCeEEEE--CCC-------CHHHHHHHHHHHHHcCCCCEEEEEEeeccc
Confidence 4556667777776643 322 356777777776654478999998754443
No 255
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=25.21 E-value=3.4e+02 Score=25.37 Aligned_cols=71 Identities=11% Similarity=0.136 Sum_probs=39.7
Q ss_pred hhHHhccCCcEEEEcCCCCC--C-c---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC----CCcE
Q 028894 39 FPFLQTLNLRSIIYLCPEPY--P-E---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR----NHPV 108 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~--~-~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~----~~pV 108 (202)
+.+.+++|.+.|..-.++.. + + ...+.+.+.|.+.+.++ |... .+.+.++.+.++.+.+.- +-|+
T Consensus 215 V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~--DTvG---~~tP~~v~~lV~~l~~~~~~~~~i~I 289 (503)
T PLN03228 215 IRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIA--DTVG---INMPHEFGELVTYVKANTPGIDDIVF 289 (503)
T ss_pred HHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEe--cCCC---CCCHHHHHHHHHHHHHHhccccCcee
Confidence 34567888864332222211 1 1 22334566788876654 3321 135677888888876531 3568
Q ss_pred EEEeCC
Q 028894 109 LIHCKR 114 (202)
Q Consensus 109 lVHC~~ 114 (202)
-+||+.
T Consensus 290 ~~H~HN 295 (503)
T PLN03228 290 SVHCHN 295 (503)
T ss_pred EecccC
Confidence 899874
No 256
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=25.11 E-value=3.3e+02 Score=23.98 Aligned_cols=20 Identities=15% Similarity=0.358 Sum_probs=14.7
Q ss_pred cEEEEeCCCCchHHHHHHHHHH
Q 028894 107 PVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 107 pVlVHC~~G~~RTG~vva~~l~ 128 (202)
...+.|.+|+ +.+-++-||-
T Consensus 235 rLalNcVGGk--sa~~iar~L~ 254 (354)
T KOG0025|consen 235 RLALNCVGGK--SATEIARYLE 254 (354)
T ss_pred eEEEeccCch--hHHHHHHHHh
Confidence 3778999985 7777777764
No 257
>PF15192 TMEM213: TMEM213 family
Probab=24.85 E-value=33 Score=23.44 Aligned_cols=21 Identities=24% Similarity=0.661 Sum_probs=17.1
Q ss_pred EEeCCCCchHHHHHHHHHHHcCCCH
Q 028894 110 IHCKRGKHRTGCLVGCLRKLQNWCL 134 (202)
Q Consensus 110 VHC~~G~~RTG~vva~~l~~~gws~ 134 (202)
..|.+|.|--|.++|+. |||+
T Consensus 36 ~CC~~gvDeyGWIAAAV----GWSL 56 (82)
T PF15192_consen 36 RCCHAGVDEYGWIAAAV----GWSL 56 (82)
T ss_pred HHhccCCchhhHHHHHH----hHHH
Confidence 35999999999999876 6664
No 258
>PRK08589 short chain dehydrogenase; Validated
Probab=24.64 E-value=3e+02 Score=22.46 Aligned_cols=68 Identities=7% Similarity=-0.015 Sum_probs=36.5
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.|+.-+.+.. ....+.+++.+-+...++++-. ..+.+..+++.+.+..+ --++|||.+.
T Consensus 24 ~~l~~~G~~vi~~~r~~~~-~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~id~li~~Ag~ 92 (272)
T PRK08589 24 IALAQEGAYVLAVDIAEAV-SETVDKIKSNGGKAKAYHVDIS-------DEQQVKDFASEIKEQFGRVDVLFNNAGV 92 (272)
T ss_pred HHHHHCCCEEEEEeCcHHH-HHHHHHHHhcCCeEEEEEeecC-------CHHHHHHHHHHHHHHcCCcCEEEECCCC
Confidence 4566789877766554211 1222233334444444444211 35677777777765333 2499999754
No 259
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=24.48 E-value=1.8e+02 Score=25.16 Aligned_cols=44 Identities=11% Similarity=0.052 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 89 PKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
+.+.+.+.++.+--..+.+|+|.|..|...++ -++..+...|..
T Consensus 87 ~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~-r~~~~L~~~G~~ 130 (320)
T PLN02723 87 SEEAFAAAVSALGIENKDGVVVYDGKGIFSAA-RVWWMFRVFGHE 130 (320)
T ss_pred CHHHHHHHHHHcCCCCCCEEEEEcCCCcchHH-HHHHHHHHcCCC
Confidence 34666666665532356799999988754433 333444455554
No 260
>PRK06172 short chain dehydrogenase; Provisional
Probab=24.33 E-value=3e+02 Score=21.97 Aligned_cols=69 Identities=4% Similarity=-0.058 Sum_probs=34.8
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.++.-|.....+...+.+++.+-+...+..+-. ..+.+.++++.+.+..+ -.++|||.+.
T Consensus 25 ~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~ 94 (253)
T PRK06172 25 LAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACDVT-------RDAEVKALVEQTIAAYGRLDYAFNNAGI 94 (253)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 456777877555555432111222233333433333333211 35667777776655322 2489999764
No 261
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=24.32 E-value=4.1e+02 Score=24.46 Aligned_cols=68 Identities=19% Similarity=0.248 Sum_probs=43.6
Q ss_pred cEEEEcCCCCCCc--hhHhHhhhCCcEEEEeecCCCCC----CCCCC---C---HHHHHHHHHHHHhC--CCCcEEEEeC
Q 028894 48 RSIIYLCPEPYPE--ENLKFLAAQNIRLFHFGIEGKTE----PPVSI---P---KDTIMEALKILIDV--RNHPVLIHCK 113 (202)
Q Consensus 48 ktVI~L~~e~~~~--~~~~~~~~~gI~~~~ipi~d~~~----p~~~~---~---~~~i~~~l~~i~~~--~~~pVlVHC~ 113 (202)
+.|||.....+.+ ...+.+++.|+.|+..|+.+... .+.-+ + .+.+..+|+.+..+ .+.|+.+||.
T Consensus 83 diiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c~~~vG 162 (459)
T PRK09287 83 DIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPCVTYIG 162 (459)
T ss_pred CEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCceeeeC
Confidence 6889987654432 34456788899999999987632 11000 1 24556666666543 4679999997
Q ss_pred CC
Q 028894 114 RG 115 (202)
Q Consensus 114 ~G 115 (202)
.+
T Consensus 163 ~~ 164 (459)
T PRK09287 163 PD 164 (459)
T ss_pred CC
Confidence 53
No 262
>PRK07774 short chain dehydrogenase; Provisional
Probab=24.23 E-value=2.9e+02 Score=21.86 Aligned_cols=69 Identities=9% Similarity=-0.042 Sum_probs=33.3
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.|+--|.+.......+.+...+-....+..+-. ..+.+..+++.+.+..+ --++|||.+.
T Consensus 24 ~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 24 EALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVDVS-------DPDSAKAMADATVSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 446677877665545431111122222222222223333211 34567777776654322 3499999874
No 263
>PRK08334 translation initiation factor IF-2B subunit beta; Validated
Probab=23.87 E-value=1.1e+02 Score=27.18 Aligned_cols=22 Identities=36% Similarity=0.604 Sum_probs=17.0
Q ss_pred cEEEEeCCCCc---hHHHHHHHHHH
Q 028894 107 PVLIHCKRGKH---RTGCLVGCLRK 128 (202)
Q Consensus 107 pVlVHC~~G~~---RTG~vva~~l~ 128 (202)
.||-||.+|.- ..|++.+.++.
T Consensus 162 ~ILTHcnaG~LAt~~~gTal~vi~~ 186 (356)
T PRK08334 162 NVLTHCNAGSLATVHLGTVGAVLRV 186 (356)
T ss_pred CEEEecCcchhhhcccchHHHHHHH
Confidence 39999999864 45777887775
No 264
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=23.86 E-value=99 Score=25.00 Aligned_cols=26 Identities=15% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHH
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKL 129 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~ 129 (202)
..+-|.|+|..|++.|-+.++.-+..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra 46 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRA 46 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHH
Confidence 46789999999999999888876654
No 265
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=23.47 E-value=6e+02 Score=23.60 Aligned_cols=39 Identities=10% Similarity=-0.031 Sum_probs=26.9
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeec
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGI 78 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi 78 (202)
+..|+++||++|.-+-..... .+.+.+.+.+|+++...=
T Consensus 15 ~~~L~~~Gv~~vFgipG~~~~-~l~~al~~~~i~~v~~~h 53 (561)
T PRK06048 15 IKCLEKEGVEVIFGYPGGAII-PVYDELYDSDLRHILVRH 53 (561)
T ss_pred HHHHHHcCCCEEEECCCcchH-HHHHHHhhCCCeEEEecc
Confidence 477999999999998765332 233344556888887643
No 266
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=23.42 E-value=6.1e+02 Score=23.65 Aligned_cols=38 Identities=13% Similarity=0.039 Sum_probs=26.0
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEee
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHFG 77 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~ip 77 (202)
+..|+++||++|.-+-..... .+.+.+ +..+|+++...
T Consensus 17 ~~~L~~~Gv~~vFgipG~~~~-~l~dal~~~~~i~~i~~r 55 (566)
T PRK07282 17 LETLRDLGVDTIFGYPGGAVL-PLYDAIYNFEGIRHILAR 55 (566)
T ss_pred HHHHHHcCCCEEEecCCcchH-HHHHHHhhcCCceEEEec
Confidence 477999999999999776332 233334 33578887753
No 267
>PRK12753 transketolase; Reviewed
Probab=23.36 E-value=1.7e+02 Score=28.33 Aligned_cols=46 Identities=28% Similarity=0.480 Sum_probs=30.4
Q ss_pred hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCC
Q 028894 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKR 114 (202)
Q Consensus 61 ~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~ 114 (202)
+..+.++..|.+++. +++++ ..+.+.++++...+..++|++|||..
T Consensus 200 ~~~~~f~a~Gw~~~~-~vDGh-------D~~~i~~a~~~a~~~~~~P~~I~~~T 245 (663)
T PRK12753 200 DTAKRFEAYHWHVIH-EIDGH-------DPQAIKEAILEAQSVKDKPSLIICRT 245 (663)
T ss_pred hHHHHHHHcCCeEEc-eeCCC-------CHHHHHHHHHHHHHCCCCeEEEEEEE
Confidence 445566777877774 23443 35778888876655457899999853
No 268
>PRK12999 pyruvate carboxylase; Reviewed
Probab=23.35 E-value=4.5e+02 Score=27.27 Aligned_cols=56 Identities=11% Similarity=0.157 Sum_probs=36.0
Q ss_pred HhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 65 FLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 65 ~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.+.+.|++.+.+ .|... .+.+..+.+.++.+.+.-+-|+-+||+. -+|+.+|.++.
T Consensus 699 ~l~~~Ga~~i~i--kDt~G---~l~P~~~~~lv~~lk~~~~ipi~~H~Hn---t~Gla~an~la 754 (1146)
T PRK12999 699 ELEKAGAHILAI--KDMAG---LLKPAAAYELVSALKEEVDLPIHLHTHD---TSGNGLATYLA 754 (1146)
T ss_pred HHHHcCCCEEEE--CCccC---CCCHHHHHHHHHHHHHHcCCeEEEEeCC---CCchHHHHHHH
Confidence 345567654443 33321 1456788888888876556899999984 56666666665
No 269
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=23.27 E-value=2.8e+02 Score=19.68 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=38.1
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV 103 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~ 103 (202)
.+|+..|++. ++|-...+++...+.+.+.+.+++-+...... ....+.+.++.+.+.
T Consensus 21 ~~l~~~G~~V-~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~------~~~~~~~~i~~l~~~ 77 (119)
T cd02067 21 RALRDAGFEV-IDLGVDVPPEEIVEAAKEEDADAIGLSGLLTT------HMTLMKEVIEELKEA 77 (119)
T ss_pred HHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccccc------cHHHHHHHHHHHHHc
Confidence 4567888877 77766544456677778888888888765332 346667777777654
No 270
>PRK07024 short chain dehydrogenase; Provisional
Probab=23.24 E-value=2.5e+02 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.116 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhCCCC-cEEEEeCCC
Q 028894 90 KDTIMEALKILIDVRNH-PVLIHCKRG 115 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~-pVlVHC~~G 115 (202)
.+.+.++++.+.+..+. -++|||.+.
T Consensus 62 ~~~i~~~~~~~~~~~g~id~lv~~ag~ 88 (257)
T PRK07024 62 ADALAAAAADFIAAHGLPDVVIANAGI 88 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCc
Confidence 56777788777654333 489998753
No 271
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=23.20 E-value=4e+02 Score=21.38 Aligned_cols=69 Identities=9% Similarity=0.103 Sum_probs=38.2
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G~ 116 (202)
..|.+.|.+.++..+.+.. +...+.+.+.+-+...++++-. ..+.+..+++.+.+.. .--++|||.+..
T Consensus 33 ~~l~~~G~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~~ 102 (258)
T PRK06935 33 VALAKAGADIIITTHGTNW-DETRRLIEKEGRKVTFVQVDLT-------KPESAEKVVKEALEEFGKIDILVNNAGTI 102 (258)
T ss_pred HHHHHCCCEEEEEeCCcHH-HHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 5567789988777665321 2223333333433333333211 3567777777776543 235999998653
No 272
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=23.15 E-value=1.9e+02 Score=22.23 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=42.3
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhC-CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQ-NIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~-gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
++.|+++||++|.-+-..... ...+.+.+. |++++...=+. ..-.+......+ .++|..+-++.|-+
T Consensus 8 ~~~L~~~Gv~~vfgvpG~~~~-~l~~al~~~~~i~~i~~~~E~--------~A~~~A~g~ar~---~g~~~v~~~~~GpG 75 (172)
T PF02776_consen 8 AEALKANGVTHVFGVPGSGNL-PLLDALEKSPGIRFIPVRHEQ--------GAAFMADGYARA---TGRPGVVIVTSGPG 75 (172)
T ss_dssp HHHHHHTT-SEEEEE--GGGH-HHHHHHHHTTTSEEEE-SSHH--------HHHHHHHHHHHH---HSSEEEEEEETTHH
T ss_pred HHHHHHCCCeEEEEEeChhHh-HHHHHhhhhcceeeecccCcc--------hhHHHHHHHHHh---hccceEEEeecccc
Confidence 467999999999999765322 344555666 79888743211 111223333322 36676666666766
Q ss_pred hHHHHHHHHH
Q 028894 118 RTGCLVGCLR 127 (202)
Q Consensus 118 RTG~vva~~l 127 (202)
=+.++.+++-
T Consensus 76 ~~n~~~~l~~ 85 (172)
T PF02776_consen 76 ATNALTGLAN 85 (172)
T ss_dssp HHTTHHHHHH
T ss_pred hHHHHHHHhh
Confidence 6666666543
No 273
>PLN02439 arginine decarboxylase
Probab=23.13 E-value=5.1e+02 Score=24.56 Aligned_cols=74 Identities=15% Similarity=0.188 Sum_probs=42.6
Q ss_pred hccCCcEEEEcCCC-CCCchhHhHhhhCCcEE---EEeecC--CC--------CCCCCCCCHHHHHHHHHHHHhCCCC--
Q 028894 43 QTLNLRSIIYLCPE-PYPEENLKFLAAQNIRL---FHFGIE--GK--------TEPPVSIPKDTIMEALKILIDVRNH-- 106 (202)
Q Consensus 43 ~~~giktVI~L~~e-~~~~~~~~~~~~~gI~~---~~ipi~--d~--------~~p~~~~~~~~i~~~l~~i~~~~~~-- 106 (202)
+.+|++.+|++-.. +. +...+.++..|++- +++... +. ......++.+++.++++.+.+...-
T Consensus 104 ~~lG~~~~IviDs~~EL-~~I~~~a~~l~~~p~IglRi~~~~~~~~~~~~tgg~~sKFGl~~~ei~~~i~~lk~~~~l~~ 182 (559)
T PLN02439 104 RKLGLNTVIVLEQEEEL-DLVIEASQRLGVRPVIGVRAKLRTKHSGHFGSTSGEKGKFGLTATEIVRVVRKLRKEGMLDC 182 (559)
T ss_pred hhCCCCeEEEECCHHHH-HHHHHHHHHcCCCceEEEEEecCCCCCCCccccCCCCCCCCCCHHHHHHHHHHHHhCCCCCc
Confidence 36789888888543 22 23344445555321 233221 11 1123456778888888888764333
Q ss_pred cEEEEeCCCCc
Q 028894 107 PVLIHCKRGKH 117 (202)
Q Consensus 107 pVlVHC~~G~~ 117 (202)
-+++||.-|..
T Consensus 183 L~GLHfHiGSQ 193 (559)
T PLN02439 183 LQLLHFHIGSQ 193 (559)
T ss_pred eEEEEEeCCCC
Confidence 48999999976
No 274
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=23.12 E-value=2.5e+02 Score=24.33 Aligned_cols=44 Identities=9% Similarity=-0.098 Sum_probs=30.4
Q ss_pred ChhHHhccCCcEEEEcCCCCCC----------chhHhHhhhCCcE-EEEeecCCC
Q 028894 38 NFPFLQTLNLRSIIYLCPEPYP----------EENLKFLAAQNIR-LFHFGIEGK 81 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~e~~~----------~~~~~~~~~~gI~-~~~ipi~d~ 81 (202)
-++.|.+.|++.|+-+...... -..++.+.+.|++ +..+|..++
T Consensus 251 ~l~~l~~~G~k~V~vvP~gFv~D~lETl~ei~~e~~~~~~~~G~~~~~~vp~lN~ 305 (322)
T TIGR00109 251 LLEKLGEQGVQHIVVVPIGFTADHLETLYEIDEEYREVAEDAGGDKYQRCPALNA 305 (322)
T ss_pred HHHHHHHcCCceEEEECCcccccchhHHHhhhHHHHHHHHHcCCCeEEECCCCCC
Confidence 4677888899999988764211 1233567788888 888888654
No 275
>PRK07035 short chain dehydrogenase; Provisional
Probab=23.10 E-value=3.4e+02 Score=21.61 Aligned_cols=70 Identities=7% Similarity=-0.058 Sum_probs=34.5
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G 115 (202)
...|.+.|.+.|+.-+.....+...+.+.+.+-+...++++-. ..+.+..+++.+.+. ..--++|||.++
T Consensus 25 ~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 95 (252)
T PRK07035 25 AKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALACHIG-------EMEQIDALFAHIRERHGRLDILVNNAAA 95 (252)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 3556777875444333221111122223333444444444321 345666667666543 234599999875
No 276
>PLN02470 acetolactate synthase
Probab=23.09 E-value=6.2e+02 Score=23.68 Aligned_cols=37 Identities=14% Similarity=0.006 Sum_probs=25.4
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEe
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHF 76 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~i 76 (202)
+..|+++||++|.-+-..... .+.+.+ +..+|+++..
T Consensus 20 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~~i~~i~~ 57 (585)
T PLN02470 20 VEALEREGVDTVFAYPGGASM-EIHQALTRSNCIRNVLC 57 (585)
T ss_pred HHHHHHcCCCEEEEcCCcccH-HHHHHHhccCCceEEEe
Confidence 477999999999999876432 233334 3347888875
No 277
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=23.09 E-value=3.8e+02 Score=21.09 Aligned_cols=70 Identities=7% Similarity=-0.066 Sum_probs=33.9
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G~ 116 (202)
..|.+.|.+.++--|...........+...+-+...+..+ -. ..+.+.++++.+.+.. .--++|||.+..
T Consensus 24 ~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D-l~------~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 94 (251)
T PRK12826 24 VRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVD-VR------DRAALKAAVAAGVEDFGRLDILVANAGIF 94 (251)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC-CC------CHHHHHHHHHHHHHHhCCCCEEEECCCCC
Confidence 4566778765554454211111222333344333333332 11 3566777776665432 234889997543
No 278
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=23.03 E-value=6.1e+02 Score=23.50 Aligned_cols=77 Identities=9% Similarity=0.066 Sum_probs=42.2
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCch
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHR 118 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~R 118 (202)
+..|+++||++|.-+-..... .+.+.+...+|+++...=+. ..-.+.+.... ..++|..+-|+.|-+=
T Consensus 9 ~~~L~~~GV~~vFg~pG~~~~-~l~dal~~~~i~~v~~~hE~--------~A~~mAdgyar---~tgkpgv~~~t~GPG~ 76 (549)
T PRK06457 9 IRVLEDNGIQRIYGIPGDSID-PLVDAIRKSKVKYVQVRHEE--------GAALAASVEAK---ITGKPSACMGTSGPGS 76 (549)
T ss_pred HHHHHHcCCCEEEEcCCcchH-HHHHHHHhcCCeEEEeCcHH--------HHHHHHHHHHH---HhCCCeEEEeCCCCch
Confidence 467999999999999765322 23334455678887743221 11122222222 2345655555555555
Q ss_pred HHHHHHHHH
Q 028894 119 TGCLVGCLR 127 (202)
Q Consensus 119 TG~vva~~l 127 (202)
|-++.+++-
T Consensus 77 ~N~l~~l~~ 85 (549)
T PRK06457 77 IHLLNGLYD 85 (549)
T ss_pred hhhHHHHHH
Confidence 666555544
No 279
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.01 E-value=6e+02 Score=23.70 Aligned_cols=38 Identities=8% Similarity=-0.070 Sum_probs=25.5
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEee
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHFG 77 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~ip 77 (202)
++.|+++|+++|.-+-..... .+.+.+ +..+|+++...
T Consensus 11 ~~~L~~~Gv~~vFgipG~~~~-~l~~al~~~~~i~~i~~r 49 (574)
T PRK06466 11 VRALRDEGVEYIYGYPGGAVL-HIYDALFKQDKVEHILVR 49 (574)
T ss_pred HHHHHHcCCCEEEECCCcchh-HHHHHhhccCCceEEEeC
Confidence 467999999999999765332 233333 33578887753
No 280
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=22.66 E-value=58 Score=28.28 Aligned_cols=99 Identities=16% Similarity=0.096 Sum_probs=51.7
Q ss_pred ChhHHhccCCcEEEEcCCCCCC---chhHhHhhhCCcEEEEeec---CCC---------------------------CC-
Q 028894 38 NFPFLQTLNLRSIIYLCPEPYP---EENLKFLAAQNIRLFHFGI---EGK---------------------------TE- 83 (202)
Q Consensus 38 ~~~~L~~~giktVI~L~~e~~~---~~~~~~~~~~gI~~~~ipi---~d~---------------------------~~- 83 (202)
++..++++|.+|||++++-..- ....+..++.|++.+---- ... +.
T Consensus 43 El~~~k~~Gg~tiVd~T~~g~GRd~~~l~~is~~tGv~II~~TG~y~~~~~p~~~~~~s~e~la~~~i~Ei~~GidgT~i 122 (308)
T PF02126_consen 43 ELKEFKAAGGRTIVDATPIGLGRDVEALREISRRTGVNIIASTGFYKEPFYPEWVREASVEELADLFIREIEEGIDGTGI 122 (308)
T ss_dssp HHHHHHHTTEEEEEE--SGGGTB-HHHHHHHHHHHT-EEEEEEEE-SGGCSCHHHHTSHHHHHHHHHHHHHHT-STTSSB
T ss_pred HHHHHHHcCCCEEEecCCcccCcCHHHHHHHHHHhCCeEEEeCCCCccccCChhhhcCCHHHHHHHHHHHHHhcCCCCcc
Confidence 4666789999999999974322 2344455556665443210 000 00
Q ss_pred ---------CCCCCCH--HHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHHHcCCCHHHH
Q 028894 84 ---------PPVSIPK--DTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRKLQNWCLSSV 137 (202)
Q Consensus 84 ---------p~~~~~~--~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~~~gws~~~a 137 (202)
....+++ +.+.++.......-+-||.+||..|. |.|.-++-++...|.+.+.+
T Consensus 123 kaG~Ik~~~~~~~it~~E~k~lrAaa~A~~~TG~pI~~H~~~g~-~~~~e~~~il~e~Gv~~~rv 186 (308)
T PF02126_consen 123 KAGIIKEIGSSNPITPLEEKVLRAAARAHKETGAPISTHTGRGT-RMGLEQLDILEEEGVDPSRV 186 (308)
T ss_dssp -ESEEEEEEBTTBCEHHHHHHHHHHHHHHHHHT-EEEEEESTTG-TCHHHHHHHHHHTT--GGGE
T ss_pred chhheeEeeccCCCCHHHHHHHHHHHHHHHHhCCeEEEcCCCCC-cCHHHHHHHHHHcCCChhHe
Confidence 0112332 23333332222235789999998875 57877777777777766554
No 281
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=22.61 E-value=3.8e+02 Score=21.36 Aligned_cols=69 Identities=16% Similarity=0.021 Sum_probs=36.4
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|.+.|+.-+..+..+...+.++..+.+...++.+-. ..+.+..+++.+.+.. .--++|||.+.
T Consensus 27 ~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 27 TGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFNVT-------HKQEVEAAIEHIEKDIGPIDVLINNAGI 96 (254)
T ss_pred HHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 556778887666555431111122223333444444444321 3567777777765532 33489999864
No 282
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=22.48 E-value=2e+02 Score=23.48 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 90 KDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 90 ~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
++.+.++.+.+++ ..+.|+| .|.||||++.-++-+
T Consensus 25 ~~~~~~a~~~i~~-~~gkv~V---~G~GkSG~Igkk~Aa 59 (202)
T COG0794 25 DEDFVRAVELILE-CKGKVFV---TGVGKSGLIGKKFAA 59 (202)
T ss_pred HHHHHHHHHHHHh-cCCcEEE---EcCChhHHHHHHHHH
Confidence 3677788888876 4567777 388999999877654
No 283
>cd06810 PLPDE_III_ODC_DapDC_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Ornithine and Diaminopimelate Decarboxylases, and Related Enzymes. This family includes eukaryotic ornithine decarboxylase (ODC, EC 4.1.1.17), diaminopimelate decarboxylase (DapDC, EC 4.1.1.20), plant and prokaryotic biosynthetic arginine decarboxylase (ADC, EC 4.1.1.19), carboxynorspermidine decarboxylase (CANSDC), and ODC-like enzymes from diverse bacterial species. These proteins are fold type III PLP-dependent enzymes that catalyze essential steps in the biosynthesis of polyamine and lysine. ODC and ADC participate in alternative pathways of the biosynthesis of putrescine, which is the precursor of aliphatic polyamines in many organisms. ODC catalyzes the direct synthesis of putrescine from L-ornithine, while ADC converts L-arginine to agmatine, which is hydrolysed to putrescine by agmatinase in a pathway that exists only in plants and bacteria. DapDC converts meso-2,6-diaminoheptanedioate to
Probab=22.38 E-value=3.2e+02 Score=23.63 Aligned_cols=88 Identities=10% Similarity=0.020 Sum_probs=43.0
Q ss_pred eeecCCCCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCc-EEEEeecCCCC----------C--CCCCCCHHHHH
Q 028894 28 IYRSSFPQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNI-RLFHFGIEGKT----------E--PPVSIPKDTIM 94 (202)
Q Consensus 28 Lyrs~~p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI-~~~~ipi~d~~----------~--p~~~~~~~~i~ 94 (202)
+|.+...+.+++.++.++|+ ..+++.+...-+...+.+++.|. .-+.+.+.... . ....++.+++.
T Consensus 73 v~~gp~~~~~~l~~~~~~~~-~~~~vds~~el~~l~~~~~~~~~~~~v~lrin~g~~~~~~~~~~~~~~srfGi~~~e~~ 151 (368)
T cd06810 73 IFTGPAKSVSEIEAALASGV-DHIVVDSLDELERLNELAKKLGPKARILLRVNPDVSAGTHKISTGGLKSKFGLSLSEAR 151 (368)
T ss_pred EEcCCCCCHHHHHHHHHCCC-CEEEeCCHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcccCccCCCCCCcCCCHHHHH
Confidence 44454445567888888885 34455432111233334433332 11333332211 0 11235567777
Q ss_pred HHHHHHHhCCCCcEEEEeCCCC
Q 028894 95 EALKILIDVRNHPVLIHCKRGK 116 (202)
Q Consensus 95 ~~l~~i~~~~~~pVlVHC~~G~ 116 (202)
++++.+.+..-.-+-+||..|.
T Consensus 152 ~~~~~~~~~~l~l~Gl~~H~gs 173 (368)
T cd06810 152 AALERAKELDLRLVGLHFHVGS 173 (368)
T ss_pred HHHHHHHhCCCcEEEEEEcCCc
Confidence 7777765433333557776664
No 284
>PRK07063 short chain dehydrogenase; Provisional
Probab=22.31 E-value=3.6e+02 Score=21.63 Aligned_cols=68 Identities=9% Similarity=0.014 Sum_probs=34.2
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhh--CCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAA--QNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKR 114 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~--~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~ 114 (202)
..|.+.|.+.|+.-+.++..+...+.+.. .+.+...++.+-. ..+.+..+++.+.+.- .--++|||.+
T Consensus 25 ~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~g~id~li~~ag 95 (260)
T PRK07063 25 RAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVT-------DAASVAAAVAAAEEAFGPLDVLVNNAG 95 (260)
T ss_pred HHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCC-------CHHHHHHHHHHHHHHhCCCcEEEECCC
Confidence 45678898765544432111112222222 2333333333211 3567777777776532 2348999975
No 285
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=22.21 E-value=2.7e+02 Score=22.30 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=24.6
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKT 82 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~ 82 (202)
..|.+.|++.-|..+.+..+.... .-+|++.+++|.....
T Consensus 28 ~~l~~~g~~v~Vyc~~~~~~~~~~---~y~gv~l~~i~~~~~g 67 (185)
T PF09314_consen 28 PRLVSKGIDVTVYCRSDYYPYKEF---EYNGVRLVYIPAPKNG 67 (185)
T ss_pred HHHhcCCceEEEEEccCCCCCCCc---ccCCeEEEEeCCCCCC
Confidence 446678999655555432221112 2379999999987553
No 286
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=22.21 E-value=2.8e+02 Score=22.34 Aligned_cols=27 Identities=15% Similarity=0.138 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 89 PKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
+.+.+.++++.+.+.. .--++|||.+.
T Consensus 59 d~~~~~~~~~~~~~~~g~id~li~naG~ 86 (259)
T PRK08340 59 DKDDLKNLVKEAWELLGGIDALVWNAGN 86 (259)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3567777887776532 23499998753
No 287
>PRK07890 short chain dehydrogenase; Provisional
Probab=22.19 E-value=2.9e+02 Score=21.98 Aligned_cols=69 Identities=6% Similarity=-0.033 Sum_probs=34.0
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~~G 115 (202)
..|.+.|.+.++.=|.++..+.....+...+.++..+..+-. ..+.+..+++.+.+.-+. -++|||...
T Consensus 23 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~g~~d~vi~~ag~ 92 (258)
T PRK07890 23 VRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTDIT-------DEDQCANLVALALERFGRVDALVNNAFR 92 (258)
T ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecCCC-------CHHHHHHHHHHHHHHcCCccEEEECCcc
Confidence 456778886554444331111122222333434433443211 356677777766543333 389999753
No 288
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=22.00 E-value=3.3e+02 Score=21.49 Aligned_cols=28 Identities=14% Similarity=0.092 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHhCC-CCcEEEEeCCCC
Q 028894 89 PKDTIMEALKILIDVR-NHPVLIHCKRGK 116 (202)
Q Consensus 89 ~~~~i~~~l~~i~~~~-~~pVlVHC~~G~ 116 (202)
..+.+.++++.+.+.. +--++|||.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~d~vi~~ag~~ 91 (250)
T TIGR03206 63 DRDSVDTAVAAAEQALGPVDVLVNNAGWD 91 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 3567777777665532 234899998653
No 289
>PRK07109 short chain dehydrogenase; Provisional
Probab=21.62 E-value=2.9e+02 Score=23.73 Aligned_cols=69 Identities=6% Similarity=-0.111 Sum_probs=38.0
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|.+.++.-|.++-.+...+.++..|.+...++.+-. ..+.+.++++.+.+.- .--++|||.+.
T Consensus 26 ~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~-------d~~~v~~~~~~~~~~~g~iD~lInnAg~ 95 (334)
T PRK07109 26 RAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVA-------DAEAVQAAADRAEEELGPIDTWVNNAMV 95 (334)
T ss_pred HHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCC-------CHHHHHHHHHHHHHHCCCCCEEEECCCc
Confidence 556778987666555432111223334445555555554321 3567777777765532 23489999754
No 290
>PRK07106 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; Provisional
Probab=21.56 E-value=1.6e+02 Score=26.55 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=29.9
Q ss_pred CCCCChhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeec
Q 028894 34 PQSSNFPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGI 78 (202)
Q Consensus 34 p~~~~~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi 78 (202)
|..++++...+.||+.||-=...--+++..+.|.++||..++-++
T Consensus 341 PF~D~Id~Aa~~GV~aIiQPGGSiRD~evI~aane~giaMvfTg~ 385 (390)
T PRK07106 341 PFGDNIERAAKSGVKYIAQPGGSIRDDNVIETCNKYGMTMAFTGV 385 (390)
T ss_pred CCCchHHHHHHcCCEEEECCCCCCCcHHHHHHHHHhCCEEEECCC
Confidence 667778888888888887543322223456677778887776544
No 291
>PRK07791 short chain dehydrogenase; Provisional
Probab=21.48 E-value=4.4e+02 Score=21.80 Aligned_cols=69 Identities=9% Similarity=-0.081 Sum_probs=35.8
Q ss_pred hHHhccCCcEEEEcCCCC------CCc---hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEE
Q 028894 40 PFLQTLNLRSIIYLCPEP------YPE---ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVL 109 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~------~~~---~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVl 109 (202)
..|.+.|.+.|+.-+... ..+ ...+.+...|-+...++.+-. ..+.+.++++.+.+.- .--++
T Consensus 24 ~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~-------~~~~v~~~~~~~~~~~g~id~l 96 (286)
T PRK07791 24 LAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIA-------DWDGAANLVDAAVETFGGLDVL 96 (286)
T ss_pred HHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCC-------CHHHHHHHHHHHHHhcCCCCEE
Confidence 446678887776544320 001 112223333444444444211 3567777887776532 33489
Q ss_pred EEeCCC
Q 028894 110 IHCKRG 115 (202)
Q Consensus 110 VHC~~G 115 (202)
|||.+.
T Consensus 97 v~nAG~ 102 (286)
T PRK07791 97 VNNAGI 102 (286)
T ss_pred EECCCC
Confidence 999643
No 292
>PRK07413 hypothetical protein; Validated
Probab=21.47 E-value=1.2e+02 Score=27.43 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=22.8
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQN 131 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~g 131 (202)
..+=|.|+|..||+.|....+..+...|
T Consensus 18 ~~Gli~VytG~GKGKTTAAlGlalRA~G 45 (382)
T PRK07413 18 SKGQLHVYDGEGKGKSQAALGVVLRTIG 45 (382)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 3567999999999999999888776533
No 293
>PRK06114 short chain dehydrogenase; Provisional
Probab=21.39 E-value=4.3e+02 Score=21.14 Aligned_cols=69 Identities=9% Similarity=-0.017 Sum_probs=36.6
Q ss_pred hHHhccCCcEEEEcCCCCCC-chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC-CCcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYP-EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR-NHPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~-~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~-~~pVlVHC~~G 115 (202)
..|.+.|.+.++.-+.++.. +...+.++..+-+...++.+-. ..+.+.++++.+.+.. +--++|||.+.
T Consensus 26 ~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~i~~~~~~~~~~~g~id~li~~ag~ 96 (254)
T PRK06114 26 IGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVT-------SKADLRAAVARTEAELGALTLAVNAAGI 96 (254)
T ss_pred HHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCC
Confidence 45677898777665543211 1222233333434444444321 3566777777765432 22489999764
No 294
>PRK07062 short chain dehydrogenase; Provisional
Probab=21.32 E-value=4.2e+02 Score=21.25 Aligned_cols=69 Identities=10% Similarity=-0.042 Sum_probs=35.2
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhhhC--CcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLAAQ--NIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~~~--gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.++.-|..+-.+...+.+... +.+...++.+-. ..+.+.++++.+.+.-+ --++|||.+.
T Consensus 26 ~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~-------~~~~v~~~~~~~~~~~g~id~li~~Ag~ 97 (265)
T PRK07062 26 ELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVL-------DEADVAAFAAAVEARFGGVDMLVNNAGQ 97 (265)
T ss_pred HHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 456678988666655432111111222221 334444444321 35677777777765322 2489999653
No 295
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=21.27 E-value=1.2e+02 Score=23.60 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=19.3
Q ss_pred CcEEEEeCCCCchHHHHHHHHHHH
Q 028894 106 HPVLIHCKRGKHRTGCLVGCLRKL 129 (202)
Q Consensus 106 ~pVlVHC~~G~~RTG~vva~~l~~ 129 (202)
+=|.|+|..|+|.|.+.++.-+..
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra 26 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRA 26 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 457899999999999888876553
No 296
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=21.26 E-value=4.4e+02 Score=24.56 Aligned_cols=69 Identities=22% Similarity=0.252 Sum_probs=43.1
Q ss_pred CcEEEEcCCCCCC--chhHhHhhhCCcEEEEeecCCCCCC----CCCC---C---HHHHHHHHHHHHhC-CCCcEEEEeC
Q 028894 47 LRSIIYLCPEPYP--EENLKFLAAQNIRLFHFGIEGKTEP----PVSI---P---KDTIMEALKILIDV-RNHPVLIHCK 113 (202)
Q Consensus 47 iktVI~L~~e~~~--~~~~~~~~~~gI~~~~ipi~d~~~p----~~~~---~---~~~i~~~l~~i~~~-~~~pVlVHC~ 113 (202)
=+.|||.....+. ....+.+++.|+.|+..|+.+.... +.-+ + .+.+..+|+.+..+ ++.|..+||.
T Consensus 100 G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL~~ia~k~~~~~~v~~vG 179 (493)
T PLN02350 100 GDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDILEKVAAQVDDGPCVTYIG 179 (493)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHHHHHhhhcCCCCcEEEeC
Confidence 3688998876442 2445677889999999999876321 1001 1 24455556665432 4568889996
Q ss_pred CC
Q 028894 114 RG 115 (202)
Q Consensus 114 ~G 115 (202)
.+
T Consensus 180 ~~ 181 (493)
T PLN02350 180 PG 181 (493)
T ss_pred Cc
Confidence 53
No 297
>PRK06949 short chain dehydrogenase; Provisional
Probab=21.21 E-value=3.5e+02 Score=21.51 Aligned_cols=70 Identities=9% Similarity=-0.043 Sum_probs=33.1
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
...|.+.|.+.++.-|..+..+.....+...+-+...++.+-. ..+.+.++++.+....+ --++|||.+.
T Consensus 26 a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~~d~li~~ag~ 96 (258)
T PRK06949 26 AQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVT-------DYQSIKAAVAHAETEAGTIDILVNNSGV 96 (258)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 3556778986444444321101111222222223333333211 34667777766654322 2389999864
No 298
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=21.17 E-value=3.3e+02 Score=19.76 Aligned_cols=85 Identities=16% Similarity=0.110 Sum_probs=48.1
Q ss_pred hHHhccCCcEEEEcCCCCCC-------chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEe
Q 028894 40 PFLQTLNLRSIIYLCPEPYP-------EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHC 112 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~-------~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC 112 (202)
+.|.+.|.+.|.-+...... ..+.+++++.|+........... ............++.. .|-.|=|
T Consensus 2 ~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~~~-~pdaii~ 74 (160)
T PF13377_consen 2 DYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDD------DSEDAREAQLLWLRRL-RPDAIIC 74 (160)
T ss_dssp HHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESS------SHHHHHHHHHHHHHTC-SSSEEEE
T ss_pred hHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCC------cchhHHHHHHHHHhcC-CCcEEEE
Confidence 57889999999999843211 24667889999986665554332 2233332332233433 6656667
Q ss_pred CCCCchHHHHHHHHHHHcCCC
Q 028894 113 KRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 113 ~~G~~RTG~vva~~l~~~gws 133 (202)
.. ++....+.-++...|++
T Consensus 75 ~~--~~~a~~~~~~l~~~g~~ 93 (160)
T PF13377_consen 75 SN--DRLALGVLRALRELGIR 93 (160)
T ss_dssp SS--HHHHHHHHHHHHHTTSC
T ss_pred cC--HHHHHHHHHHHHHcCCc
Confidence 54 45555444455556664
No 299
>PRK06123 short chain dehydrogenase; Provisional
Probab=21.14 E-value=3.4e+02 Score=21.46 Aligned_cols=69 Identities=4% Similarity=-0.022 Sum_probs=33.9
Q ss_pred hHHhccCCcEEEEcCCCC-CCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEP-YPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~-~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~~G 115 (202)
..|.+.|.+.|+..+..+ ........++..+.+...++.+-. ..+.+.++++.+.+..+. -++|||.+.
T Consensus 20 ~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~ 90 (248)
T PRK06123 20 LLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAADVA-------DEADVLRLFEAVDRELGRLDALVNNAGI 90 (248)
T ss_pred HHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEeccC-------CHHHHHHHHHHHHHHhCCCCEEEECCCC
Confidence 446677876555443321 111122223334444434444211 345677777766543222 389999754
No 300
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=21.11 E-value=5.9e+02 Score=23.62 Aligned_cols=76 Identities=13% Similarity=0.077 Sum_probs=41.0
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHh-hhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCc
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFL-AAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKH 117 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~-~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~ 117 (202)
+..|+++||++|.-+-..... .+...+ +..+|+++...=+.. .-.+.+....+ .++|..+-|+.|-+
T Consensus 16 ~~~L~~~GV~~vFgvpG~~~~-~l~~~l~~~~~i~~v~~~hE~~--------A~~aAdgyar~---tg~~~v~~vt~GpG 83 (568)
T PRK07449 16 LEELTRLGVRHVVIAPGSRST-PLTLAAAEHPRLRLHTHFDERS--------AGFLALGLAKA---SKRPVAVIVTSGTA 83 (568)
T ss_pred HHHHHHcCCCEEEECCCCccH-HHHHHHHhCCCcEEEeecCccc--------HHHHHHHHHHh---hCCCEEEEECCccH
Confidence 467899999999999776332 233333 345788877543321 12222222222 34555455555555
Q ss_pred hHHHHHHHH
Q 028894 118 RTGCLVGCL 126 (202)
Q Consensus 118 RTG~vva~~ 126 (202)
=|-++.|++
T Consensus 84 ~~N~l~~i~ 92 (568)
T PRK07449 84 VANLYPAVI 92 (568)
T ss_pred HHhhhHHHH
Confidence 555555544
No 301
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=21.10 E-value=3.6e+02 Score=20.06 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=28.4
Q ss_pred hhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeC
Q 028894 61 ENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCK 113 (202)
Q Consensus 61 ~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~ 113 (202)
+....++..|+++.++ . ..+++.++++...+ .++|++|+|.
T Consensus 127 d~~~~a~~~G~~~~~v--~---------~~~~l~~a~~~a~~-~~~p~~i~v~ 167 (168)
T cd00568 127 DFAALAEAYGAKGVRV--E---------DPEDLEAALAEALA-AGGPALIEVK 167 (168)
T ss_pred CHHHHHHHCCCeEEEE--C---------CHHHHHHHHHHHHh-CCCCEEEEEE
Confidence 4556677778877654 1 25677777777764 6789999984
No 302
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=21.10 E-value=3.1e+02 Score=28.42 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=37.9
Q ss_pred HhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCCchHHHHHHHHHH
Q 028894 63 LKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGKHRTGCLVGCLRK 128 (202)
Q Consensus 63 ~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~~RTG~vva~~l~ 128 (202)
.+.+.+.|+..+.+ .|... .+.+..+.+.++.+.+.-+-|+-+||+. .+|+.+|.++.
T Consensus 695 ak~l~~~Gad~I~i--kDt~G---ll~P~~~~~Lv~~lk~~~~~pi~~H~Hd---t~Gla~an~la 752 (1143)
T TIGR01235 695 AVELEKAGAHILGI--KDMAG---LLKPAAAKLLIKALREKTDLPIHFHTHD---TSGIAVASMLA 752 (1143)
T ss_pred HHHHHHcCCCEEEE--CCCcC---CcCHHHHHHHHHHHHHhcCCeEEEEECC---CCCcHHHHHHH
Confidence 44456678865544 44432 2456788888888876556899999973 55666666664
No 303
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=21.03 E-value=2.8e+02 Score=20.32 Aligned_cols=70 Identities=14% Similarity=0.088 Sum_probs=40.6
Q ss_pred HHhccCCcEEEEcCCC---CCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 028894 41 FLQTLNLRSIIYLCPE---PYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRGK 116 (202)
Q Consensus 41 ~L~~~giktVI~L~~e---~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G~ 116 (202)
.|.+.|-+.|+-+... +-.......++..+.+..-++.+-. ..+.+..+++.+.+. ..--++|||....
T Consensus 19 ~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~-------~~~~~~~~~~~~~~~~~~ld~li~~ag~~ 91 (167)
T PF00106_consen 19 ALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLS-------DPESIRALIEEVIKRFGPLDILINNAGIF 91 (167)
T ss_dssp HHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETT-------SHHHHHHHHHHHHHHHSSESEEEEECSCT
T ss_pred HHHhcCceEEEEeeeccccccccccccccccccccccccccccc-------ccccccccccccccccccccccccccccc
Confidence 3445566665555433 1112233445666776666665422 467888888888742 2334999997765
Q ss_pred c
Q 028894 117 H 117 (202)
Q Consensus 117 ~ 117 (202)
.
T Consensus 92 ~ 92 (167)
T PF00106_consen 92 S 92 (167)
T ss_dssp T
T ss_pred c
Confidence 3
No 304
>PRK12743 oxidoreductase; Provisional
Probab=21.02 E-value=4.4e+02 Score=21.11 Aligned_cols=70 Identities=14% Similarity=0.055 Sum_probs=36.4
Q ss_pred hHHhccCCcEEEEcCCCCC-CchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCC-cEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPY-PEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNH-PVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~-~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~-pVlVHC~~G~ 116 (202)
..|.+.|.+.++..+.... .+...+.++..|-+...+.++-. ..+.+..+++.+.+.-+. -++|||.+..
T Consensus 20 ~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~li~~ag~~ 91 (256)
T PRK12743 20 LLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLDLS-------DLPEGAQALDKLIQRLGRIDVLVNNAGAM 91 (256)
T ss_pred HHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEccCC-------CHHHHHHHHHHHHHHcCCCCEEEECCCCC
Confidence 4566789877776554321 11122233334544444444321 356677777766553222 3889997543
No 305
>PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed
Probab=20.97 E-value=5.3e+02 Score=22.34 Aligned_cols=70 Identities=6% Similarity=-0.007 Sum_probs=41.9
Q ss_pred CCChhHHhccCCcEEEEcC-----------CCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCC
Q 028894 36 SSNFPFLQTLNLRSIIYLC-----------PEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVR 104 (202)
Q Consensus 36 ~~~~~~L~~~giktVI~L~-----------~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~ 104 (202)
+.-.+.|+++|+++|=++. ....++...+.+++.|++.+.-.. |. -..+...++.+. .+
T Consensus 43 ~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viDaTC-----P~----V~k~~~~v~~~~-~~ 112 (298)
T PRK01045 43 RYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAKERGLTVIDATC-----PL----VTKVHKEVARMS-RE 112 (298)
T ss_pred HHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEeCCC-----cc----chHHHHHHHHHH-hC
Confidence 4567889999998774443 222334566677888888765333 32 233333444443 36
Q ss_pred CCcEEEEeCCC
Q 028894 105 NHPVLIHCKRG 115 (202)
Q Consensus 105 ~~pVlVHC~~G 115 (202)
++.|+++...+
T Consensus 113 Gy~vvi~G~~~ 123 (298)
T PRK01045 113 GYEIILIGHKG 123 (298)
T ss_pred CCEEEEEeCCC
Confidence 77888887554
No 306
>PF02673 BacA: Bacitracin resistance protein BacA; InterPro: IPR003824 This is a family of small, highly hydrophobic proteins. Over-expression of this protein in Escherichia coli is associated with bacitracin resistance [], and the protein was originally proposed to be an undecaprenol kinase called bacA. BacA protein, however, does not show undecaprenol phosphokinase activity []. It is now known to be an undecaprenyl pyrophosphate phosphatase (3.6.1.27 from EC) and is renamed UppP. It is not the only protein associated with bacitracin resistance [, ].; GO: 0050380 undecaprenyl-diphosphatase activity, 0016311 dephosphorylation, 0016020 membrane
Probab=20.96 E-value=1.1e+02 Score=25.78 Aligned_cols=26 Identities=15% Similarity=0.060 Sum_probs=20.3
Q ss_pred CCCCchHHHHHHHHHHHcCCCHHHHHH
Q 028894 113 KRGKHRTGCLVGCLRKLQNWCLSSVFE 139 (202)
Q Consensus 113 ~~G~~RTG~vva~~l~~~gws~~~a~~ 139 (202)
--|.+|||..++..+ ..|++.++|.+
T Consensus 159 ~PGiSRSG~Ti~~~l-~~G~~r~~A~~ 184 (259)
T PF02673_consen 159 IPGISRSGATITAGL-LLGLDREEAAR 184 (259)
T ss_pred CCCcChHHHHHHHHH-HCCCCHHHHHH
Confidence 469999997766654 57999988865
No 307
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=20.91 E-value=3.8e+02 Score=20.94 Aligned_cols=70 Identities=13% Similarity=-0.048 Sum_probs=33.9
Q ss_pred hhHHhccCCcEEEEcCCCCCC-chhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYP-EENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~-~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
...|.+.|.+.++..++.+.. +.........+.+..-++.+- . ..+.+.++++.+.+..+ --++|||.+.
T Consensus 17 a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~-~------~~~~~~~~~~~~~~~~~~id~vi~~ag~ 88 (242)
T TIGR01829 17 CQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGDV-S------SFESCKAAVAKVEAELGPIDVLVNNAGI 88 (242)
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEecC-C------CHHHHHHHHHHHHHHcCCCcEEEECCCC
Confidence 355677898777766632110 011111222232333333321 1 34567777776654322 2488999654
No 308
>PRK07775 short chain dehydrogenase; Provisional
Probab=20.84 E-value=4e+02 Score=21.75 Aligned_cols=70 Identities=11% Similarity=-0.003 Sum_probs=35.3
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhC-CCCcEEEEeCCC
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDV-RNHPVLIHCKRG 115 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~-~~~pVlVHC~~G 115 (202)
...|.+.|.+.++..+..+........+...+.+...+..+-. ..+.+..+++.+.+. ..--++|||.+.
T Consensus 27 a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------~~~~~~~~~~~~~~~~~~id~vi~~Ag~ 97 (274)
T PRK07775 27 AIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLDVT-------DPDSVKSFVAQAEEALGEIEVLVSGAGD 97 (274)
T ss_pred HHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCC-------CHHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3557778987655545321111112222333434433343221 356777777766542 223489999854
No 309
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=20.57 E-value=1.7e+02 Score=25.76 Aligned_cols=22 Identities=36% Similarity=0.726 Sum_probs=15.7
Q ss_pred cEEEEeCCCC---chHHHHHHHHHH
Q 028894 107 PVLIHCKRGK---HRTGCLVGCLRK 128 (202)
Q Consensus 107 pVlVHC~~G~---~RTG~vva~~l~ 128 (202)
.||-||.+|. +..|++.+.++.
T Consensus 149 ~ILThcnsg~lat~~~gtal~~l~~ 173 (331)
T TIGR00512 149 RVLTHCNTGSLATAGYGTALGVIRS 173 (331)
T ss_pred eEEeecCCccccccccchHHHHHHH
Confidence 6999999984 334666676664
No 310
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=20.48 E-value=4.3e+02 Score=21.73 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=35.6
Q ss_pred hHHhccCCcEEEEcCCCCCCchhHhHhh-hCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 028894 40 PFLQTLNLRSIIYLCPEPYPEENLKFLA-AQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRNHPVLIHCKRGK 116 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~~~~~~~~~~~-~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~~pVlVHC~~G~ 116 (202)
+.++++|++.|+-+.+....+......+ ..|+-|+ +.+.+.+... .-..+.+.+.++.+.+..+.||.| -.|.
T Consensus 123 ~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~-~s~~g~tG~~-~~~~~~~~~~i~~lr~~~~~pI~v--ggGI 196 (242)
T cd04724 123 EAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYY-VSRTGVTGAR-TELPDDLKELIKRIRKYTDLPIAV--GFGI 196 (242)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEE-EeCCCCCCCc-cCCChhHHHHHHHHHhcCCCcEEE--EccC
Confidence 4457778888887877643333444444 4454432 2222211110 001234555666665544566654 5555
No 311
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=20.39 E-value=1.4e+02 Score=25.34 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCCcE--EEEeCCCCchHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 028894 95 EALKILIDVRNHPV--LIHCKRGKHRTGCLVGCLRKLQNWCLSSVFEEYRHF 144 (202)
Q Consensus 95 ~~l~~i~~~~~~pV--lVHC~~G~~RTG~vva~~l~~~gws~~~a~~ey~~~ 144 (202)
.+|+.|.+..+.|+ +++.-+|- -||.++|+++...|++.+++.+-|...
T Consensus 25 ~vL~~Le~~~~~~i~~~fDli~GT-StGgiiA~~la~~~~~~~e~~~~y~~~ 75 (308)
T cd07211 25 EILRKIEKLTGKPIHELFDYICGV-STGAILAFLLGLKKMSLDECEELYRKL 75 (308)
T ss_pred HHHHHHHHHhCCCchhhcCEEEec-ChhHHHHHHHhcccccHHHHHHHHHHH
Confidence 34555544334554 35666665 578888887777789999998887653
No 312
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=20.37 E-value=1.4e+02 Score=26.67 Aligned_cols=28 Identities=18% Similarity=0.368 Sum_probs=19.5
Q ss_pred CCCcEEEEeCCCCchHHHHHHHHHHHcCCC
Q 028894 104 RNHPVLIHCKRGKHRTGCLVGCLRKLQNWC 133 (202)
Q Consensus 104 ~~~pVlVHC~~G~~RTG~vva~~l~~~gws 133 (202)
.+.||+++|..|. |+.. ++..+...|.+
T Consensus 342 ~d~~iVvyC~~G~-rS~~-aa~~L~~~G~~ 369 (392)
T PRK07878 342 QDRTIVLYCKTGV-RSAE-ALAALKKAGFS 369 (392)
T ss_pred CCCcEEEEcCCCh-HHHH-HHHHHHHcCCC
Confidence 6789999999885 6644 45555556664
No 313
>PRK09134 short chain dehydrogenase; Provisional
Probab=20.35 E-value=4.6e+02 Score=21.01 Aligned_cols=69 Identities=7% Similarity=-0.076 Sum_probs=34.9
Q ss_pred hHHhccCCcEEEEcCCCC-CCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHhCCC-CcEEEEeCCC
Q 028894 40 PFLQTLNLRSIIYLCPEP-YPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILIDVRN-HPVLIHCKRG 115 (202)
Q Consensus 40 ~~L~~~giktVI~L~~e~-~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~~~~-~pVlVHC~~G 115 (202)
..|.+.|.+.++..+... ..+.....+...+-+...++.+-. ..+.+.++++.+....+ --++|||.+.
T Consensus 27 ~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~-------d~~~~~~~~~~~~~~~~~iD~vi~~ag~ 97 (258)
T PRK09134 27 LDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQADLA-------DEAEVRALVARASAALGPITLLVNNASL 97 (258)
T ss_pred HHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcCCC-------CHHHHHHHHHHHHHHcCCCCEEEECCcC
Confidence 456788987766655431 111122222233433333443211 34567777766654222 2499999864
No 314
>PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional
Probab=20.03 E-value=5.2e+02 Score=22.17 Aligned_cols=66 Identities=12% Similarity=0.157 Sum_probs=37.1
Q ss_pred CCChhHHhccCCcEE--EE-----------cCCCCCCchhHhHhhhCCcEEEEeecCCCCCCCCCCCHHHHHHHHHHHHh
Q 028894 36 SSNFPFLQTLNLRSI--IY-----------LCPEPYPEENLKFLAAQNIRLFHFGIEGKTEPPVSIPKDTIMEALKILID 102 (202)
Q Consensus 36 ~~~~~~L~~~giktV--I~-----------L~~e~~~~~~~~~~~~~gI~~~~ipi~d~~~p~~~~~~~~i~~~l~~i~~ 102 (202)
+.-.+.|++.|++.| =+ +|....++...+.+++.|++.+. .+-|. -..+...++.+.+
T Consensus 44 ~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~~~g~~viD-----aTCP~----V~k~~~~v~~~~~ 114 (281)
T PRK12360 44 NQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLKDKGLEIID-----ATCPF----VKKIQNIVEEYYN 114 (281)
T ss_pred HHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHHHCCCeEEe-----CCCcc----chHHHHHHHHHHh
Confidence 445788899999887 33 33333345566677888887764 33332 2233333443332
Q ss_pred CCCCcEEEE
Q 028894 103 VRNHPVLIH 111 (202)
Q Consensus 103 ~~~~pVlVH 111 (202)
+++.|+++
T Consensus 115 -~Gy~ivii 122 (281)
T PRK12360 115 -KGYSIIIV 122 (281)
T ss_pred -CCCEEEEE
Confidence 56666665
No 315
>PRK07524 hypothetical protein; Provisional
Probab=20.01 E-value=6.7e+02 Score=23.09 Aligned_cols=39 Identities=15% Similarity=0.073 Sum_probs=25.8
Q ss_pred hhHHhccCCcEEEEcCCCCCCchhHhHhhhCCcEEEEeec
Q 028894 39 FPFLQTLNLRSIIYLCPEPYPEENLKFLAAQNIRLFHFGI 78 (202)
Q Consensus 39 ~~~L~~~giktVI~L~~e~~~~~~~~~~~~~gI~~~~ipi 78 (202)
++.|+++||++|.-+-..... ...+.+.+.+|+++...=
T Consensus 9 ~~~L~~~Gv~~vFg~pG~~~~-~~~dal~~~~i~~i~~~h 47 (535)
T PRK07524 9 VRLLEAYGVETVFGIPGVHTV-ELYRGLAGSGIRHVTPRH 47 (535)
T ss_pred HHHHHHcCCCEEEeCCCcchH-HHHHHHhhcCCcEEEecc
Confidence 467999999999998765321 233344456788876543
Done!