Query 028895
Match_columns 202
No_of_seqs 118 out of 523
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 04:13:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028895.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028895hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00101 14_3_3 14-3-3 homol 100.0 4.1E-80 9E-85 529.2 21.1 196 7-202 1-198 (244)
2 COG5040 BMH1 14-3-3 family pro 100.0 2.7E-81 5.8E-86 515.5 11.7 200 3-202 1-200 (268)
3 PF00244 14-3-3: 14-3-3 protei 100.0 6.9E-76 1.5E-80 501.6 18.6 196 7-202 1-196 (236)
4 KOG0841 Multifunctional chaper 100.0 7.9E-71 1.7E-75 464.1 15.6 197 6-202 1-198 (247)
5 PF13424 TPR_12: Tetratricopep 94.3 0.098 2.1E-06 35.9 4.7 52 148-201 21-72 (78)
6 KOG1840 Kinesin light chain [C 93.4 5.7 0.00012 38.0 16.1 178 9-201 201-393 (508)
7 TIGR00990 3a0801s09 mitochondr 92.0 3.8 8.2E-05 39.2 13.1 52 148-201 483-534 (615)
8 PF12862 Apc5: Anaphase-promot 84.5 4.3 9.2E-05 29.4 6.2 52 149-201 15-67 (94)
9 PF13374 TPR_10: Tetratricopep 81.4 1.6 3.4E-05 25.7 2.4 24 148-171 18-41 (42)
10 PF07719 TPR_2: Tetratricopept 81.4 3.9 8.5E-05 23.0 4.1 30 10-39 4-33 (34)
11 KOG1840 Kinesin light chain [C 76.9 72 0.0016 30.6 15.7 172 9-200 285-475 (508)
12 COG0233 Frr Ribosome recycling 76.8 8.8 0.00019 32.1 6.2 73 38-111 105-177 (187)
13 PF13181 TPR_8: Tetratricopept 75.3 5.3 0.00012 22.6 3.4 29 10-38 4-32 (34)
14 PF13174 TPR_6: Tetratricopept 75.3 6.5 0.00014 21.8 3.7 29 10-38 3-31 (33)
15 PF01765 RRF: Ribosome recycli 74.7 11 0.00024 30.4 6.2 73 38-111 85-157 (165)
16 PF04781 DUF627: Protein of un 74.0 11 0.00025 28.8 5.7 88 104-197 16-107 (111)
17 PF13428 TPR_14: Tetratricopep 73.0 8.3 0.00018 23.6 4.0 30 10-39 4-33 (44)
18 PF00515 TPR_1: Tetratricopept 71.5 11 0.00023 21.3 4.1 30 10-39 4-33 (34)
19 PF13414 TPR_11: TPR repeat; P 70.7 18 0.00039 23.6 5.6 46 148-201 19-64 (69)
20 TIGR00496 frr ribosome recycli 70.3 14 0.0003 30.4 5.8 73 38-111 94-166 (176)
21 KOG4759 Ribosome recycling fac 70.1 21 0.00045 31.4 7.1 71 38-111 183-253 (263)
22 PF05010 TACC: Transforming ac 69.1 14 0.00031 31.3 5.8 80 12-108 123-206 (207)
23 PRK00083 frr ribosome recyclin 67.2 17 0.00037 30.1 5.9 73 38-111 103-175 (185)
24 cd00520 RRF Ribosome recycling 66.8 15 0.00033 30.1 5.5 73 38-111 99-171 (179)
25 PF13432 TPR_16: Tetratricopep 57.3 26 0.00057 22.6 4.4 41 12-53 2-42 (65)
26 PRK15179 Vi polysaccharide bio 54.7 2.2E+02 0.0048 28.4 12.0 130 8-163 87-219 (694)
27 smart00028 TPR Tetratricopepti 54.6 27 0.00059 17.4 3.8 29 10-38 4-32 (34)
28 PF13432 TPR_16: Tetratricopep 52.5 31 0.00066 22.2 4.1 32 7-38 31-62 (65)
29 PF13176 TPR_7: Tetratricopept 51.8 31 0.00067 20.1 3.6 26 10-35 2-27 (36)
30 TIGR02917 PEP_TPR_lipo putativ 48.7 2.4E+02 0.0053 26.7 15.7 30 10-39 468-497 (899)
31 cd02656 MIT MIT: domain contai 46.6 91 0.002 21.3 5.9 27 9-35 8-34 (75)
32 PRK11447 cellulose synthase su 46.3 3.2E+02 0.0069 28.6 12.2 58 10-69 606-663 (1157)
33 PF13414 TPR_11: TPR repeat; P 46.1 79 0.0017 20.3 7.0 46 8-54 4-49 (69)
34 PF13424 TPR_12: Tetratricopep 45.5 37 0.00081 22.6 3.7 31 170-201 1-31 (78)
35 PF09976 TPR_21: Tetratricopep 44.8 1.4E+02 0.003 22.7 9.0 30 120-159 116-145 (145)
36 TIGR02917 PEP_TPR_lipo putativ 42.1 3.1E+02 0.0067 26.0 16.2 29 10-38 604-632 (899)
37 PF10083 DUF2321: Uncharacteri 38.8 43 0.00092 27.3 3.5 34 25-58 83-116 (158)
38 PF13371 TPR_9: Tetratricopept 37.6 66 0.0014 21.0 4.0 26 14-39 2-27 (73)
39 PF13371 TPR_9: Tetratricopept 37.5 65 0.0014 21.0 3.9 30 9-38 31-60 (73)
40 KOG4162 Predicted calmodulin-b 35.7 1E+02 0.0022 31.1 6.3 68 125-201 436-504 (799)
41 PF12895 Apc3: Anaphase-promot 35.1 63 0.0014 22.0 3.7 46 153-201 39-84 (84)
42 PRK10049 pgaA outer membrane p 33.6 4.9E+02 0.011 25.8 13.5 29 10-38 119-147 (765)
43 PF14559 TPR_19: Tetratricopep 33.6 61 0.0013 20.8 3.2 52 19-72 3-54 (68)
44 COG2250 Uncharacterized conser 32.6 2.3E+02 0.0051 21.9 9.3 103 8-111 14-129 (132)
45 KOG4507 Uncharacterized conser 32.6 48 0.001 32.9 3.4 45 122-183 220-264 (886)
46 smart00745 MIT Microtubule Int 32.4 1.6E+02 0.0035 19.9 5.9 28 8-35 9-36 (77)
47 TIGR02521 type_IV_pilW type IV 31.7 2.3E+02 0.0051 21.6 16.1 44 9-53 33-76 (234)
48 TIGR02105 III_needle type III 30.4 1.5E+02 0.0032 20.9 4.8 36 146-184 12-51 (72)
49 CHL00033 ycf3 photosystem I as 30.3 1.8E+02 0.0039 22.5 5.9 67 119-201 32-98 (168)
50 PF12569 NARP1: NMDA receptor- 29.4 5.2E+02 0.011 24.8 16.1 59 142-201 156-220 (517)
51 cd05493 Bromo_ALL-1 Bromodomai 29.2 70 0.0015 25.2 3.3 37 94-130 75-118 (131)
52 cd02678 MIT_VPS4 MIT: domain c 28.4 2E+02 0.0043 19.7 5.7 28 8-35 7-34 (75)
53 PF00887 ACBP: Acyl CoA bindin 27.8 2.2E+02 0.0048 20.1 6.4 35 22-57 4-38 (87)
54 PF06160 EzrA: Septation ring 27.1 5.7E+02 0.012 24.6 11.2 126 19-171 415-548 (560)
55 PRK14720 transcript cleavage f 26.9 1.1E+02 0.0024 31.6 5.0 77 112-201 93-175 (906)
56 PF09324 DUF1981: Domain of un 26.8 2.1E+02 0.0046 20.3 5.3 37 38-74 28-68 (86)
57 cd02683 MIT_1 MIT: domain cont 25.9 1.7E+02 0.0037 20.5 4.6 28 8-35 7-34 (77)
58 PF00244 14-3-3: 14-3-3 protei 25.8 2.4E+02 0.0053 23.9 6.3 63 92-168 141-208 (236)
59 PRK15326 type III secretion sy 25.6 2.3E+02 0.0051 20.4 5.2 35 148-184 20-58 (80)
60 PRK11189 lipoprotein NlpI; Pro 25.0 1.7E+02 0.0036 25.3 5.3 37 9-45 238-274 (296)
61 TIGR00990 3a0801s09 mitochondr 24.9 6.1E+02 0.013 24.2 17.1 54 10-66 130-183 (615)
62 PRK10370 formate-dependent nit 24.9 1.7E+02 0.0036 23.9 5.0 59 8-68 108-169 (198)
63 PF14689 SPOB_a: Sensor_kinase 24.4 75 0.0016 21.3 2.4 24 12-35 28-51 (62)
64 PRK15359 type III secretion sy 24.3 1.2E+02 0.0026 23.2 3.9 26 11-36 62-87 (144)
65 KOG3089 Predicted DEAD-box-con 23.8 2.8E+02 0.0061 24.2 6.2 80 20-108 78-160 (271)
66 cd02684 MIT_2 MIT: domain cont 23.6 2.6E+02 0.0056 19.4 5.8 28 8-35 7-34 (75)
67 PRK11788 tetratricopeptide rep 23.3 3.1E+02 0.0068 23.8 6.8 61 10-71 217-277 (389)
68 PF09969 DUF2203: Uncharacteri 23.3 3.5E+02 0.0075 20.8 7.9 66 40-105 3-68 (120)
69 TIGR02552 LcrH_SycD type III s 23.3 2.9E+02 0.0064 19.9 5.9 32 8-39 18-49 (135)
70 cd02682 MIT_AAA_Arch MIT: doma 22.7 1.6E+02 0.0034 20.9 3.9 27 9-35 8-34 (75)
71 TIGR02284 conserved hypothetic 22.6 1.4E+02 0.0029 23.3 3.9 20 149-170 98-117 (139)
72 COG2956 Predicted N-acetylgluc 22.4 1.4E+02 0.003 27.6 4.2 47 11-57 218-264 (389)
73 COG5506 Uncharacterized conser 22.3 1.6E+02 0.0035 23.5 4.1 80 25-129 3-83 (144)
74 PRK15179 Vi polysaccharide bio 22.3 6.6E+02 0.014 25.1 9.4 44 5-51 152-195 (694)
75 PF05008 V-SNARE: Vesicle tran 22.2 2.7E+02 0.0057 19.0 6.2 42 25-66 3-44 (79)
76 TIGR02795 tol_pal_ybgF tol-pal 21.3 2.9E+02 0.0062 19.0 7.4 43 10-52 5-49 (119)
77 PF12083 DUF3560: Domain of un 20.6 1.2E+02 0.0026 23.7 3.1 29 146-175 20-48 (126)
No 1
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=100.00 E-value=4.1e-80 Score=529.17 Aligned_cols=196 Identities=69% Similarity=1.043 Sum_probs=190.9
Q ss_pred hHhHHHHHHHHHHhCCHHHHHHHHHHHhhc-C-CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHH
Q 028895 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (202)
Q Consensus 7 re~li~~AklaeqaeRy~dm~~~mk~~i~~-~-~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~ 84 (202)
|++++|+|||++||||||||+++||++++. + .+||.||||||||||||+||++|+|||+|+++|++++.+|++.+++.
T Consensus 1 re~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~sie~ke~~~~~~~~~~~ 80 (244)
T smart00101 1 REENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVAS 80 (244)
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhHHHHhhhccCchHHHHH
Confidence 689999999999999999999999999997 5 59999999999999999999999999999999999887888888899
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 028895 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (202)
Q Consensus 85 i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 164 (202)
+++||++|++||..+|++|+++||++|||.+++++++|||+|||||||||+|||..|+++++++++|+++|++|+++|+.
T Consensus 81 ~~~yr~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~ 160 (244)
T smart00101 81 IKEYRGKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALA 160 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
+|||||||||||+||||||||||+|+|++||++|++||
T Consensus 161 ~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~af 198 (244)
T smart00101 161 ELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 198 (244)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986
No 2
>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-81 Score=515.49 Aligned_cols=200 Identities=65% Similarity=1.050 Sum_probs=197.1
Q ss_pred CcchhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHH
Q 028895 3 SSKERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNA 82 (202)
Q Consensus 3 m~~~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~ 82 (202)
|+..|++.+|+|+|++|||||+||++-||.++..+++|+.+|||||||||||+||.||+|||++++++|+++.+|+..++
T Consensus 1 Ms~~rE~svylAkLaeqAERYe~MvenMk~vas~~~eLsVeeRNLlSVAYKNvigaRRaSWRivsSieQKeEsk~~~~qv 80 (268)
T COG5040 1 MSTSREDSVYLAKLAEQAERYEEMVENMKLVASSGQELSVEERNLLSVAYKNVIGARRASWRIVSSIEQKEESKGNTHQV 80 (268)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHhcCCChhHH
Confidence 57779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHH
Q 028895 83 KRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAA 162 (202)
Q Consensus 83 ~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 162 (202)
.+|++|+++|+.||..||+||+++|+++|||.+++.|++|||+|||||||||+|||..|+.++++.+.++++|+.|.++|
T Consensus 81 ~lI~eyrkkiE~EL~~icddiL~vl~~hlipaa~~~EskvFyyKMKGDYyRYlAEf~~G~~~~e~a~~slE~YK~AseiA 160 (268)
T COG5040 81 ELIKEYRKKIETELTKICDDILSVLEKHLIPAATTGESKVFYYKMKGDYYRYLAEFSVGEAREEAADSSLEAYKAASEIA 160 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEeecchHHHHHHHhccchHhHHHHHhHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 163 EADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 163 ~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
..+||||||||||||||||||||||+|+|++||.||+.||
T Consensus 161 ~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaF 200 (268)
T COG5040 161 TTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAF 200 (268)
T ss_pred hccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987
No 3
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=100.00 E-value=6.9e-76 Score=501.57 Aligned_cols=196 Identities=66% Similarity=1.063 Sum_probs=188.3
Q ss_pred hHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHH
Q 028895 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIK 86 (202)
Q Consensus 7 re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~ 86 (202)
|++++|+|||++|||||+||+++||++++.+++||.|||||||+||||+||++|+|||+|++++++++.+|++..++.++
T Consensus 1 Re~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~ 80 (236)
T PF00244_consen 1 REELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIK 80 (236)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccC
Q 028895 87 EYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (202)
Q Consensus 87 ~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 166 (202)
+|+++|++||..+|++|+++||++|+|.+++++++|||+|||||||||+|||..|+++.+++++|.++|++|+++|+.+|
T Consensus 81 ~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 160 (236)
T PF00244_consen 81 DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKEL 160 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 167 PPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 167 ~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
|||||+||||+||||||||||+|++++||+||++||
T Consensus 161 ~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~af 196 (236)
T PF00244_consen 161 PPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAF 196 (236)
T ss_dssp CTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999986
No 4
>KOG0841 consensus Multifunctional chaperone (14-3-3 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-71 Score=464.09 Aligned_cols=197 Identities=74% Similarity=1.117 Sum_probs=193.0
Q ss_pred hhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHH
Q 028895 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (202)
Q Consensus 6 ~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i 85 (202)
+|+++|++|++++|||||+||+.+||.+++.+.+||.||||||||+|||+||++|+|||+|++|||+++.+|++.++..+
T Consensus 1 ~~~~~v~~akl~eqaery~~m~~~Mk~v~~~~~eLtveernllsvayknVigarrasWriisSiEqKees~~~e~~v~~i 80 (247)
T KOG0841|consen 1 EREELVYKAKLAEQAERYDEMVEAMKKVAELDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESKGNEEKVKMI 80 (247)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHhhcccchhhhHHHHhhhhhhhccccchhHHHHHHhhhhhhcccCCCcchHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCCC-ChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 028895 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASA-GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (202)
Q Consensus 86 ~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~-~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 164 (202)
..|+++|+.||..+|++++.++|.+|+|+++. .|++|||+|||||||||+|||..|++|++++++++++|+.|+++++.
T Consensus 81 ~~yr~~vE~El~~ic~~iL~lld~~Li~sa~~~~es~vf~~kmKgdy~rylae~~sg~erke~~~~sl~aYk~a~~ia~~ 160 (247)
T KOG0841|consen 81 KEYRQKVETELAKICDDILSLLDKHLIPSATLPGESKVFYLKMKGDYYRYLAEFASGDERKEAADQSLEAYKEASEIAKA 160 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccceeeeeccchhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999888 78999999999999999999999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
.|+||||||||||||||||||||+|.|++||.||+.||
T Consensus 161 ~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~ 198 (247)
T KOG0841|consen 161 ELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAF 198 (247)
T ss_pred cCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999874
No 5
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.31 E-value=0.098 Score=35.90 Aligned_cols=52 Identities=23% Similarity=0.311 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-+.|.+.|++|+++ ...+++.||...-...|.+.. |.-+|++++|.+..+.|
T Consensus 21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGEC-YYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 45699999999999 457888888766666666655 55689999999988776
No 6
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=93.41 E-value=5.7 Score=38.01 Aligned_cols=178 Identities=15% Similarity=0.188 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHhhhhhhhchhhhHHHHHH-hHHhhHhhhCc--
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKL-------DVELTVEERNLLSVGYKNVIGARRASWRILS-SIEQKEEAKGN-- 78 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~-------~~~L~~eERnLlsvayKn~i~~~R~s~R~l~-~~eq~~~~~~~-- 78 (202)
.+.++|.+..+.|+|+..+...|..++. +..+=....+-|.+.|-+ .+..+.|..+.. ++...+...|.
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~-~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRS-LGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4456888899999999999999998865 222223344557777765 345567777663 34444444443
Q ss_pred hHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHH
Q 028895 79 EVNAKRIKE-----YRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMK 153 (202)
Q Consensus 79 ~~~~~~i~~-----y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~ 153 (202)
+.....+.+ ++.-=-.|-...|+.+++|..+ ++.+..++-.- .+.|+..-..-..-.+.|..
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~--~~~~~~~~v~~-----------~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK--LLGASHPEVAA-----------QLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH--hhccChHHHHH-----------HHHHHHHHHHHhcchhHHHH
Confidence 333333332 4444457889999999999988 33443443222 12233222222333677899
Q ss_pred HHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 154 AYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 154 aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-|+.|+++....+.+.||.-=|.--|+++.|+ .+|..++|-++.+.|
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHH
Confidence 99999999998899999999999999999766 589999998888876
No 7
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=92.00 E-value=3.8 Score=39.21 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++.. ...+.++..++ .+|.+..+|+-.++.++|..+.+.|
T Consensus 483 ~~~A~~~~~~Al~l~p-~~~~~~~~~~~-l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 483 FDEAIEKFDTAIELEK-ETKPMYMNVLP-LINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred HHHHHHHHHHHHhcCC-ccccccccHHH-HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4568888888887653 23344433333 3555666777778888888877664
No 8
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=84.46 E-value=4.3 Score=29.37 Aligned_cols=52 Identities=13% Similarity=0.099 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHH-HHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLA-LNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLa-LN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
..|.+.....++.+..+..+.++..+..+ ||.+.+++. +|++++|....++|
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eA 67 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEA 67 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence 45788888888888877776654455544 778776555 59999988887776
No 9
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=81.45 E-value=1.6 Score=25.72 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCc
Q 028895 148 AANSMKAYETATTAAEADLPPTHP 171 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~P 171 (202)
.+.|...+++|+++.+.-++|.||
T Consensus 18 ~~~A~~~~~~al~~~~~~~G~~Hp 41 (42)
T PF13374_consen 18 YEEALELLEEALEIRERLLGPDHP 41 (42)
T ss_dssp HHHHHHHHHHHHHHH---------
T ss_pred cchhhHHHHHHHHHHHHHhccccc
Confidence 456899999999999988899998
No 10
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=81.40 E-value=3.9 Score=22.97 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
+..++.+..+.|+|++.++++++++..+|+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 457889999999999999999999987653
No 11
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=76.88 E-value=72 Score=30.62 Aligned_cols=172 Identities=14% Similarity=0.087 Sum_probs=105.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcC----CCCCHHHHHHHHh---------hhhhhhchhhhHHHHHHhHHhhHhh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD----VELTVEERNLLSV---------GYKNVIGARRASWRILSSIEQKEEA 75 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~----~~L~~eERnLlsv---------ayKn~i~~~R~s~R~l~~~eq~~~~ 75 (202)
-+.-+|.+.-..|+|++.-.+++.+++.- .....+--..|+. .|-..+.-.+.+.+++ +.....
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~---~~~~g~ 361 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY---LDAPGE 361 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---Hhhccc
Confidence 35567888888899999999999988542 1223332222221 1222222233333333 222111
Q ss_pred hCchHHHH-----HHHH-HHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHH
Q 028895 76 KGNEVNAK-----RIKE-YRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAA 149 (202)
Q Consensus 76 ~~~~~~~~-----~i~~-y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~ 149 (202)
. + ..+. +-.- ++.-=-+|-..+-..+|++.....= ..+...-.+.+.|-.||+|-- -.+
T Consensus 362 ~-~-~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~--~~~~~~~~~l~~la~~~~~~k-----------~~~ 426 (508)
T KOG1840|consen 362 D-N-VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLG--KKDYGVGKPLNQLAEAYEELK-----------KYE 426 (508)
T ss_pred c-c-hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccc--CcChhhhHHHHHHHHHHHHhc-----------ccc
Confidence 1 1 0111 1111 1111234556667777777654432 223455678888888876432 244
Q ss_pred HHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhh
Q 028895 150 NSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMH 200 (202)
Q Consensus 150 ~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~ 200 (202)
.|.+.|.+|..|. ....|.||--++..+|.+. .|+-+|+.++|.++...
T Consensus 427 ~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~-~Y~~~g~~e~a~~~~~~ 475 (508)
T KOG1840|consen 427 EAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAA-LYRAQGNYEAAEELEEK 475 (508)
T ss_pred hHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHH-HHHHcccHHHHHHHHHH
Confidence 5889999999999 6899999999999999987 57999999999999764
No 12
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=76.79 E-value=8.8 Score=32.06 Aligned_cols=73 Identities=22% Similarity=0.220 Sum_probs=51.8
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|..-.|...-.-|-|.|.+.--- +.+-+...+--.+-++-..+.++++..+.++.+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~EeakvaiRniRrda-~d~iKK~~K~~~isEDe~k~~e~~iQKlTd~yi~~iD~~~ 177 (187)
T COG0233 105 PPLTEERRKELVKVAKKYAEEAKVAVRNIRRDA-NDKIKKLEKDKEISEDEVKKAEEEIQKLTDEYIKKIDELL 177 (187)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999999999985211 1111111111123466677888899999999888888765
No 13
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.35 E-value=5.3 Score=22.58 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
+..++++..+.|.++.+..+++++++.+|
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 56789999999999999999999988754
No 14
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=75.34 E-value=6.5 Score=21.77 Aligned_cols=29 Identities=17% Similarity=0.216 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
+..+|.+..+.|++++.++.++.++...|
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 56789999999999999999999997655
No 15
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=74.73 E-value=11 Score=30.40 Aligned_cols=73 Identities=22% Similarity=0.192 Sum_probs=50.2
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|++|.|-|.-+....|......|.+.|.+..--.+.- +........-++-..+.+++|..+-++.+.-||..+
T Consensus 85 P~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~l-kk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~ 157 (165)
T PF01765_consen 85 PPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKL-KKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELL 157 (165)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999864322221 110010013456667788888888888888887654
No 16
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=74.05 E-value=11 Score=28.85 Aligned_cols=88 Identities=15% Similarity=0.196 Sum_probs=56.1
Q ss_pred HHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccc-hHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHH--
Q 028895 104 MTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGD-EKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNF-- 180 (202)
Q Consensus 104 i~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~-~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~-- 180 (202)
+++|.+.+.... ..++-.|-+...|+.|..+|...++. -+....-.|.+||.+|..++ |..+.-|=..-+-
T Consensus 16 L~iied~i~~h~-~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Ls-----p~~A~~L~~la~~l~ 89 (111)
T PF04781_consen 16 LEIIEDLISRHG-EDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELS-----PDSAHSLFELASQLG 89 (111)
T ss_pred HHHHHHHHHHcc-CCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccC-----hhHHHHHHHHHHHhh
Confidence 334444443332 22333488999999999999977654 45567888999999997654 3334433333344
Q ss_pred -HHHHHHHhCChHHHHHh
Q 028895 181 -SVFYYEIMNSPERFVRY 197 (202)
Q Consensus 181 -SVF~yEi~~~~~~A~~i 197 (202)
..||-+.+...++|..+
T Consensus 90 s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 90 SVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHHHHhcc
Confidence 66777777766666544
No 17
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=72.96 E-value=8.3 Score=23.62 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
...+|+...+.|++++.....+++++.+|+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 567899999999999999999999987764
No 18
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=71.54 E-value=11 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
+..++.+..+.++|++.+.+.+++++.+|+
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 456788899999999999999999988764
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=70.74 E-value=18 Score=23.60 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-+.|...|++|+++ .|.|| .+..|.++-++..-+++++|+...+.|
T Consensus 19 ~~~A~~~~~~ai~~-----~p~~~---~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 19 YEEAIEYFEKAIEL-----DPNNA---EAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHHH-----STTHH---HHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-----CCCCH---HHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 45689999999876 34454 467777777655433799999887765
No 20
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=70.27 E-value=14 Score=30.43 Aligned_cols=73 Identities=19% Similarity=0.242 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|.-..|...-..|.+.|-+..--.+. -+...+.-.+-++-..++++++..+.++.+.-||..+
T Consensus 94 P~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~-iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~id~~~ 166 (176)
T TIGR00496 94 PPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDK-VKKLEKDKEISEDEERRLQEEIQKLTDEYIKKIDEIL 166 (176)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999998999999885311111 0000000012245666778888888888888887655
No 21
>KOG4759 consensus Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=70.08 E-value=21 Score=31.41 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+.|.|-|.=|+...|......|.|+|-+..---+...+.... .-++=..+++.||..+.++.+..+|..|
T Consensus 183 P~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~---~~~D~vkkae~~l~~l~k~~v~~ld~ll 253 (263)
T KOG4759|consen 183 PPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS---LSEDEVKKAEAELQKLAKDAVNKLDDLL 253 (263)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999999999999864333322221111 2355666889999999999999998766
No 22
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.14 E-value=14 Score=31.25 Aligned_cols=80 Identities=23% Similarity=0.366 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH----hHHhhHhhhCchHHHHHHHH
Q 028895 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS----SIEQKEEAKGNEVNAKRIKE 87 (202)
Q Consensus 12 ~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~----~~eq~~~~~~~~~~~~~i~~ 87 (202)
|.++|..+-.||+-|-..... .-+..++|-.-+-..++.-+...+..+|--. |++..- +
T Consensus 123 y~~~l~~~eqry~aLK~hAee----kL~~ANeei~~v~~~~~~e~~aLqa~lkk~e~~~~SLe~~L-------------e 185 (207)
T PF05010_consen 123 YEERLKKEEQRYQALKAHAEE----KLEKANEEIAQVRSKHQAELLALQASLKKEEMKVQSLEESL-------------E 185 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-------------H
Confidence 677788878888665444433 2234556666666666666666777766542 111110 1
Q ss_pred HHHHHHHHHHHhHHHHHHHHh
Q 028895 88 YRQKVESELSDICNDIMTVID 108 (202)
Q Consensus 88 y~~ki~~EL~~iC~eii~lid 108 (202)
-+.+=..||..||+|+|.-++
T Consensus 186 QK~kEn~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 186 QKTKENEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 122335899999999887553
No 23
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=67.24 E-value=17 Score=30.09 Aligned_cols=73 Identities=21% Similarity=0.204 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|.+.|.+..--.+.- +...+.-..-++-..+.++|+..+.++.+.-||..+
T Consensus 103 P~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~i-Kk~~k~~~iseD~~k~~e~eiQkltd~~i~~id~~~ 175 (185)
T PRK00083 103 PPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKL-KKLEKDKEISEDELKRAEDEIQKLTDKYIKKIDELL 175 (185)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999999888999998853211110 100000012245556777888888888888877654
No 24
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=66.83 E-value=15 Score=30.12 Aligned_cols=73 Identities=22% Similarity=0.243 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-..|.+.|.+..--.+. -++....-..-++-..+.++++..+.++.+.-||..+
T Consensus 99 P~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~-lKk~~k~~~iseD~~k~~~~~iqkltd~~i~~id~~~ 171 (179)
T cd00520 99 PPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDK-IKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELL 171 (179)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988999998885311111 0100000011245556677888888888888777654
No 25
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=57.34 E-value=26 Score=22.57 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhh
Q 028895 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (202)
Q Consensus 12 ~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayK 53 (202)
.+|...-+.|+|++.+...++++..+|. +.+=+..+..++-
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~ 42 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILY 42 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 4678888999999999999999987755 5555555555543
No 26
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=54.69 E-value=2.2e+02 Score=28.38 Aligned_cols=130 Identities=14% Similarity=-0.011 Sum_probs=73.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKE 87 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~ 87 (202)
+-+.-+|.+..+.|||||.......+++..|+...--.++-.+-.+. +..=.|.-. +++-... .++... ...
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~--~~~eeA~~~---~~~~l~~--~p~~~~-~~~ 158 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQ--QGIEAGRAE---IELYFSG--GSSSAR-EIL 158 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHh--ccHHHHHHH---HHHHhhc--CCCCHH-HHH
Confidence 44567899999999999999999999999887654444433333221 000011111 1111110 111111 011
Q ss_pred HHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHH---HHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHh
Q 028895 88 YRQKVESELSDICNDIMTVIDEHLIPSASAGESTV---FFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (202)
Q Consensus 88 y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskv---Fy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 163 (202)
-+.+.-.+ ..-+++.+.+.++.|-|...+++..+ --+|-.|+ .+.|..+|++|.+...
T Consensus 159 ~~a~~l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~-----------------~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 159 LEAKSWDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGA-----------------LWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHHHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHHhhC
Confidence 11111222 23466788888888877766555444 44566676 5678889999988764
No 27
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=54.57 E-value=27 Score=17.43 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
+..+|.+..+.++|++.+.+....+...+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 34677888889999999999998887654
No 28
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=52.52 E-value=31 Score=22.24 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=26.7
Q ss_pred hHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 7 re~li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
.+-+..++.+..+.|+|++.+...+.++..+|
T Consensus 31 ~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 31 PEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 45567889999999999999999999987765
No 29
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=51.78 E-value=31 Score=20.15 Aligned_cols=26 Identities=8% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
+..+|.+..+.|.|+.++++-++...
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45789999999999999999998553
No 30
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=48.73 E-value=2.4e+02 Score=26.72 Aligned_cols=30 Identities=3% Similarity=0.082 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
...++.+..+.|+|++.+.+..++++.+|.
T Consensus 468 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 497 (899)
T TIGR02917 468 HNLLGAIYLGKGDLAKAREAFEKALSIEPD 497 (899)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCCC
Confidence 445566666667777766666666655443
No 31
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=46.56 E-value=91 Score=21.27 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
+++-.|--+++.|+|++.+.+..+.++
T Consensus 8 ~l~~~Av~~D~~g~~~~Al~~Y~~a~e 34 (75)
T cd02656 8 ELIKQAVKEDEDGNYEEALELYKEALD 34 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466677778889999999999988875
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=46.32 E-value=3.2e+02 Score=28.59 Aligned_cols=58 Identities=19% Similarity=0.089 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhH
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSI 69 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~ 69 (202)
...+|.+..+.|+|++.+.+.+++++..|+ +.+=+.-+..+|... +....+...+..+
T Consensus 606 ~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~-g~~~eA~~~l~~l 663 (1157)
T PRK11447 606 DLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQ-GDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 456788888889999999999999887766 344455555555443 5556666666543
No 33
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=46.06 E-value=79 Score=20.34 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=33.5
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN 54 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn 54 (202)
+.+..+|.+.-+.|+|++++.+.++.++.+|.- .+=..-++.+|..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~ 49 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMK 49 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH
Confidence 345678999999999999999999999987653 3333344444433
No 34
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=45.46 E-value=37 Score=22.64 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=24.3
Q ss_pred CchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 170 HPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 170 ~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
||.......|.+..|+ -+|+.++|....+.|
T Consensus 1 H~~~a~~~~~la~~~~-~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 1 HPDTANAYNNLARVYR-ELGRYDEALDYYEKA 31 (78)
T ss_dssp -HHHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 7888888888888877 789999999887765
No 35
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=44.82 E-value=1.4e+02 Score=22.70 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=21.1
Q ss_pred HHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHH
Q 028895 120 STVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETAT 159 (202)
Q Consensus 120 skvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~ 159 (202)
.+-+++-++||.|.= .|+ .+.|..+|++|+
T Consensus 116 ~~~~~~~~~Gdi~~~-----~g~-----~~~A~~~y~~Al 145 (145)
T PF09976_consen 116 FKALAAELLGDIYLA-----QGD-----YDEARAAYQKAL 145 (145)
T ss_pred hHHHHHHHHHHHHHH-----CCC-----HHHHHHHHHHhC
Confidence 456678899997733 332 456899999884
No 36
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=42.07 E-value=3.1e+02 Score=26.02 Aligned_cols=29 Identities=14% Similarity=0.274 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
...++.+..+.|+|++.+...+++++.++
T Consensus 604 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 632 (899)
T TIGR02917 604 WLMLGRAQLAAGDLNKAVSSFKKLLALQP 632 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34455566666666666666666655443
No 37
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=38.75 E-value=43 Score=27.28 Aligned_cols=34 Identities=15% Similarity=0.275 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhch
Q 028895 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGA 58 (202)
Q Consensus 25 dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~ 58 (202)
..++..+++++...+||.+|++.|.-+...++-.
T Consensus 83 ~~L~aa~el~ee~eeLs~deke~~~~sl~dL~~d 116 (158)
T PF10083_consen 83 NALEAANELIEEDEELSPDEKEQFKESLPDLTKD 116 (158)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHhhhHHHhhc
Confidence 4567778888888999999999999998887654
No 38
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=37.65 E-value=66 Score=20.96 Aligned_cols=26 Identities=23% Similarity=0.472 Sum_probs=21.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 14 AKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 14 AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
+.+.-+.++|+.+++++..++..+|+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~ 27 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD 27 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc
Confidence 45677889999999999999988766
No 39
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=37.53 E-value=65 Score=20.99 Aligned_cols=30 Identities=20% Similarity=0.305 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
-...+|.+..+.|+|++.++.+..+++.+|
T Consensus 31 ~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 31 LWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred hhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 456789999999999999999999998766
No 40
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=35.71 E-value=1e+02 Score=31.14 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=46.3
Q ss_pred HHhhccccccchhh-cccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 125 YKMKGDYYRYLAEF-KFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 125 ~KmkGDyyRYlaE~-~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+++-|=-|-..|-. ...++|...-.++.++|++|.+ +.|+|| +++=|--..|-+.++.+.|...++++
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~-----~d~~dp----~~if~lalq~A~~R~l~sAl~~~~ea 504 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ-----FDPTDP----LVIFYLALQYAEQRQLTSALDYAREA 504 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh-----cCCCCc----hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 44555555555543 3456788888999999999864 678999 33333334456678888888888765
No 41
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=35.08 E-value=63 Score=22.03 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=29.2
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 153 KAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 153 ~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.-|.+|+++.+. .+.+|..+....-+ --.|--+|+.++|+...+.|
T Consensus 39 ~~y~~A~~~~~~--~~~~~~~~~~~~l~-a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 39 GKYEEAIELLQK--LKLDPSNPDIHYLL-ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp THHHHHHHHHHC--HTHHHCHHHHHHHH-HHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHH--hCCCCCCHHHHHHH-HHHHHHhCCHHHHHHHHhcC
Confidence 346777777754 44555444545544 45677789999999887654
No 42
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=33.57 E-value=4.9e+02 Score=25.84 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=13.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
+..+|.+..+.|++++.+..++++++..|
T Consensus 119 ~~~la~~l~~~g~~~~Al~~l~~al~~~P 147 (765)
T PRK10049 119 LLALAYVYKRAGRHWDELRAMTQALPRAP 147 (765)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 33444444445555555555555444433
No 43
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=33.55 E-value=61 Score=20.79 Aligned_cols=52 Identities=19% Similarity=0.336 Sum_probs=33.9
Q ss_pred HhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhh
Q 028895 19 QAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK 72 (202)
Q Consensus 19 qaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~ 72 (202)
+.|+|++.+...++++..+|. +.+=+-.+..+|-.. |..-.|-+++..+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQ-GQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHT-T-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHH
Confidence 457788888888888877666 566666666665543 6666677777655444
No 44
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=32.65 E-value=2.3e+02 Score=21.85 Aligned_cols=103 Identities=15% Similarity=0.124 Sum_probs=66.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhc----------C-CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKL----------D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAK 76 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~----------~-~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~ 76 (202)
...+-.|+..-..|.|+.++..-.|.++. + ++-|..=+.||....+. +.....-++.+..++..--..
T Consensus 14 ~~~l~~A~~~le~G~y~~a~f~aqQAvel~lKalL~~~~~~~p~tH~l~~Ll~~l~~~-~~~~e~~~~~~~~Le~~yi~s 92 (132)
T COG2250 14 ERDLKLAKRDLELGDYDLACFHAQQAVELALKALLIRLGGEPPKTHSLRELLRELSRE-LEVPEEILECARELEKRYILS 92 (132)
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHhHh
Confidence 45566778888889999999887776633 3 67778888888888764 343333334443333332111
Q ss_pred Cch--HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 77 GNE--VNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 77 ~~~--~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
.-. ........|-+...+++......|++++...+
T Consensus 93 rY~d~~~~~p~e~~~~~~ae~~l~~A~~v~e~v~~~l 129 (132)
T COG2250 93 RYPDAEYEGPLELYSKEDAEELLKTAEKVLELVEGLL 129 (132)
T ss_pred cCccccccCccchhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 101 01113467888888899999999999988655
No 45
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=32.60 E-value=48 Score=32.91 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=29.9
Q ss_pred HHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHH
Q 028895 122 VFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVF 183 (202)
Q Consensus 122 vFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF 183 (202)
-|||+|+|. .-.|..||--|.-.+..+..-+--+-||..||-+=|
T Consensus 220 s~YWR~~G~-----------------~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~ 264 (886)
T KOG4507|consen 220 SFYWRIKGE-----------------PYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGF 264 (886)
T ss_pred HHHHHHcCC-----------------hhhhhHHHHHHhhhCCcccccchhhhHHHHHHHccc
Confidence 488888886 335788888888877654444444556666775433
No 46
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=32.37 E-value=1.6e+02 Score=19.95 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
-+++..|--.+++|+|++.+.+.+..++
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e 36 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIE 36 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566777778889999999999988875
No 47
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=31.71 E-value=2.3e+02 Score=21.56 Aligned_cols=44 Identities=11% Similarity=0.001 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayK 53 (202)
-...++...-..|+|+++++.+++++..+|. +..-...++..|-
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~ 76 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQ 76 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 3556778888889999999999988876544 3334444454443
No 48
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=30.43 E-value=1.5e+02 Score=20.91 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchHHH----HHHHHHHHH
Q 028895 146 EAAANSMKAYETATTAAEADLPPTHPIRLG----LALNFSVFY 184 (202)
Q Consensus 146 ~~~~~a~~aY~~A~~~a~~~L~pt~PirLg----LaLN~SVF~ 184 (202)
..+..+-++.+.|++-. ..|.||..|. ..-+||+|+
T Consensus 12 ~~~~~~~~~l~~a~~~l---~~~~nP~~La~~Q~~~~qYs~~~ 51 (72)
T TIGR02105 12 KPADDANQAVNDSLAAL---DLPNDPELMAELQFALNQYSAYY 51 (72)
T ss_pred HHHHHHHHHHHHHHHcc---CCCCCHHHHHHHHHHHHHHHHHH
Confidence 45666777888887643 6678998886 445677664
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=30.29 E-value=1.8e+02 Score=22.50 Aligned_cols=67 Identities=18% Similarity=0.179 Sum_probs=40.2
Q ss_pred hHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhh
Q 028895 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYY 198 (202)
Q Consensus 119 eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~ 198 (202)
+....++-..|-.+.-.-. .+.|...|+.|+.+. |.++.......|.++ .|..+|+.++|....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~----------~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~-~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGE----------YAEALQNYYEAMRLE-----IDPYDRSYILYNIGL-IHTSNGEHTKALEYY 95 (168)
T ss_pred hHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcc-----ccchhhHHHHHHHHH-HHHHcCCHHHHHHHH
Confidence 3456666666665543321 346788888888763 223323334455544 455679999999887
Q ss_pred hhh
Q 028895 199 MHC 201 (202)
Q Consensus 199 ~~~ 201 (202)
..|
T Consensus 96 ~~A 98 (168)
T CHL00033 96 FQA 98 (168)
T ss_pred HHH
Confidence 765
No 50
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=29.41 E-value=5.2e+02 Score=24.84 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCC------CCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 142 DEKKEAAANSMKAYETATTAAEADLP------PTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 142 ~~~~~~~~~a~~aY~~A~~~a~~~L~------pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.++..+++.-...|...++... .++ +..|.-+--++.|---+|+.+|+.++|.+....|
T Consensus 156 ~~K~~~i~~l~~~~~~~l~~~~-~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 156 PEKAAIIESLVEEYVNSLESNG-SFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred hhHHHHHHHHHHHHHHhhcccC-CCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4556677777777777665432 233 2357777778888888999999999999988776
No 51
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=29.24 E-value=70 Score=25.23 Aligned_cols=37 Identities=22% Similarity=0.395 Sum_probs=24.5
Q ss_pred HHHHHhHHHHHHHHhhccCCCCCCC-------hHHHHHHHhhcc
Q 028895 94 SELSDICNDIMTVIDEHLIPSASAG-------ESTVFFYKMKGD 130 (202)
Q Consensus 94 ~EL~~iC~eii~lid~~Lip~~~~~-------eskvFy~KmkGD 130 (202)
+=+.++|+||+.+|...|......+ -.|-||+|.-=+
T Consensus 75 ~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~ 118 (131)
T cd05493 75 TSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMES 118 (131)
T ss_pred ehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHH
Confidence 4567889999999988885333222 256688876543
No 52
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=28.39 E-value=2e+02 Score=19.74 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=24.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
.+++-.|--.+++|+|++.+.+..+.++
T Consensus 7 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie 34 (75)
T cd02678 7 IELVKKAIEEDNAGNYEEALRLYQHALE 34 (75)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4677778888999999999999999886
No 53
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=27.82 E-value=2.2e+02 Score=20.05 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=25.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhc
Q 028895 22 RYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIG 57 (202)
Q Consensus 22 Ry~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~ 57 (202)
+|+.++.+++..-.. ..++.+++-.|-.-||-.+.
T Consensus 4 ~F~~A~~~v~~~~~~-~~~~~~~~L~LYalyKQAt~ 38 (87)
T PF00887_consen 4 EFEAAVEFVSNLPKK-SQLSNDDKLELYALYKQATH 38 (87)
T ss_dssp HHHHHHHHHHHSSSC-STS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccc-CCCCHHHHHHHHHHHHHHHh
Confidence 577777777765433 57999999999888888773
No 54
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=27.11 E-value=5.7e+02 Score=24.61 Aligned_cols=126 Identities=13% Similarity=0.220 Sum_probs=74.0
Q ss_pred HhCCHHHHHHHHHHHhhc-C-CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHH
Q 028895 19 QAERYDEMVDAMKNVAKL-D-VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESEL 96 (202)
Q Consensus 19 qaeRy~dm~~~mk~~i~~-~-~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL 96 (202)
+..+|.-.+.-+|..++. | |.++.+=...|..+... |..+.+.-. ..+-....+...-..+...+
T Consensus 415 ~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~~~~~~~-----------i~~l~~~L~--~~pinm~~v~~~l~~a~~~v 481 (560)
T PF06160_consen 415 KLQKLKQKLREIKRRLEKSNLPGLPEDYLDYFFDVSDE-----------IEELSDELN--QVPINMDEVNKQLEEAEDDV 481 (560)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHH-----------HHHHHHHHh--cCCcCHHHHHHHHHHHHHHH
Confidence 345677777777777754 3 77777766666666544 222222211 12234567778888889999
Q ss_pred HHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHH------HHHHHHHHhccCCCCC
Q 028895 97 SDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKA------YETATTAAEADLPPTH 170 (202)
Q Consensus 97 ~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~a------Y~~A~~~a~~~L~pt~ 170 (202)
..+...+-++||+..+- |.-+=|- .||-.-.. +-......|..+ |++|++.+..-|...+
T Consensus 482 ~~L~~~t~~li~~A~L~-----E~~iQYa------NRYR~~~~---~v~~al~~Ae~~F~~~~~Y~~ALe~i~~alE~ve 547 (560)
T PF06160_consen 482 ETLEEKTEELIDNATLA-----EQLIQYA------NRYRSDNP---EVDEALTEAEDLFRNEYDYEKALETIATALEKVE 547 (560)
T ss_pred HHHHHHHHHHHHHHHHH-----HHHHHHH------hcccCCCH---HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhC
Confidence 99999999999876652 3333221 24433222 222234444444 5558888876566666
Q ss_pred c
Q 028895 171 P 171 (202)
Q Consensus 171 P 171 (202)
|
T Consensus 548 P 548 (560)
T PF06160_consen 548 P 548 (560)
T ss_pred C
Confidence 5
No 55
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=26.93 E-value=1.1e+02 Score=31.56 Aligned_cols=77 Identities=16% Similarity=0.046 Sum_probs=48.6
Q ss_pred CCCCCCChHHHHHHHhhccccc------cchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHH
Q 028895 112 IPSASAGESTVFFYKMKGDYYR------YLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYY 185 (202)
Q Consensus 112 ip~~~~~eskvFy~KmkGDyyR------YlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~y 185 (202)
.|.........||++..|||+. .+|++-. +-.-.++|..+|++++++ .|.||. +||+==++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Yd---k~g~~~ka~~~yer~L~~-----D~~n~~----aLNn~AY~~ 160 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYA---KLNENKKLKGVWERLVKA-----DRDNPE----IVKKLATSY 160 (906)
T ss_pred cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHH---HcCChHHHHHHHHHHHhc-----CcccHH----HHHHHHHHH
Confidence 3444444566677778887763 2344322 112245688888888754 478874 555555555
Q ss_pred HHhCChHHHHHhhhhh
Q 028895 186 EIMNSPERFVRYYMHC 201 (202)
Q Consensus 186 Ei~~~~~~A~~i~~~~ 201 (202)
.-. |.++|..++..|
T Consensus 161 ae~-dL~KA~~m~~KA 175 (906)
T PRK14720 161 EEE-DKEKAITYLKKA 175 (906)
T ss_pred HHh-hHHHHHHHHHHH
Confidence 555 999999999876
No 56
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.83 E-value=2.1e+02 Score=20.30 Aligned_cols=37 Identities=14% Similarity=0.335 Sum_probs=28.3
Q ss_pred CCCCHHHHHHHHhhhhhhhc----hhhhHHHHHHhHHhhHh
Q 028895 38 VELTVEERNLLSVGYKNVIG----ARRASWRILSSIEQKEE 74 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~----~~R~s~R~l~~~eq~~~ 74 (202)
..-+.+-|.+...+..+++. ..|++|+++-++-....
T Consensus 28 ~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa 68 (86)
T PF09324_consen 28 NNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAA 68 (86)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 34677888888888888887 66999999977665543
No 57
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=25.89 E-value=1.7e+02 Score=20.50 Aligned_cols=28 Identities=14% Similarity=0.154 Sum_probs=23.6
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
-+++..|--.+++|+|++.+.+-.+.++
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4678888889999999999988887775
No 58
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=25.78 E-value=2.4e+02 Score=23.91 Aligned_cols=63 Identities=16% Similarity=0.346 Sum_probs=39.5
Q ss_pred HHHHHHHhHHHHHHHHhhccCCCCCC-----ChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccC
Q 028895 92 VESELSDICNDIMTVIDEHLIPSASA-----GESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADL 166 (202)
Q Consensus 92 i~~EL~~iC~eii~lid~~Lip~~~~-----~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L 166 (202)
..+.-...-++.+++....|-|...- -.-.|||+...|| ..++.+-|.+|+.+|..-.. .+
T Consensus 141 ~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~-------------~~~A~~ia~~afd~a~~~l~-~l 206 (236)
T PF00244_consen 141 AAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILND-------------PEKAIEIAKQAFDEAISELD-TL 206 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS--------------HHHHHHHHHHHHHHHHHGGG-GS
T ss_pred HHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCC-------------hHHHHHHHHHHHHHHHhhhc-cc
Confidence 44444555666778888876554321 1456899888776 34577888888888876543 34
Q ss_pred CC
Q 028895 167 PP 168 (202)
Q Consensus 167 ~p 168 (202)
+.
T Consensus 207 ~e 208 (236)
T PF00244_consen 207 SE 208 (236)
T ss_dssp HT
T ss_pred ch
Confidence 43
No 59
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=25.58 E-value=2.3e+02 Score=20.44 Aligned_cols=35 Identities=14% Similarity=0.208 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHH----HHHHHHHHH
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLG----LALNFSVFY 184 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLg----LaLN~SVF~ 184 (202)
+....+.-++|++-- +..|.||..|+ +.-+|++|+
T Consensus 20 a~~~~~~l~~Al~~l--~~~pdnP~~LA~~Qa~l~eyn~~R 58 (80)
T PRK15326 20 VDNLQTQVTEALDKL--AAKPSDPALLAAYQSKLSEYNLYR 58 (80)
T ss_pred HHHHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 445566666666533 58999999998 566777664
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=24.99 E-value=1.7e+02 Score=25.34 Aligned_cols=37 Identities=27% Similarity=0.246 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEER 45 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eER 45 (202)
-..+++++.++.|++++.+.+.++++..++.=..|-|
T Consensus 238 a~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~ 274 (296)
T PRK11189 238 TYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHR 274 (296)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4668899999999999999999999988754333333
No 61
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=24.92 E-value=6.1e+02 Score=24.17 Aligned_cols=54 Identities=4% Similarity=-0.044 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHH
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 66 (202)
+..++...-+.|+|++.+.+..+++..+|+ ..-..-++.+|-. .+....+....
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~--~~~~~n~a~~~~~-l~~~~~Ai~~~ 183 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPD--PVYYSNRAACHNA-LGDWEKVVEDT 183 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHH-hCCHHHHHHHH
Confidence 446677788889999999999999988774 3333334444432 34455555444
No 62
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=24.86 E-value=1.7e+02 Score=23.94 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=38.2
Q ss_pred HhHHHHHHH-HHHhCC--HHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 8 ENFVYVAKL-AEQAER--YDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 8 e~li~~Akl-aeqaeR--y~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
+-+..+|.+ ..+.|+ +++....+.+++..+|. +.+=+.+|..++-. .+....|......
T Consensus 108 ~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~-~g~~~~Ai~~~~~ 169 (198)
T PRK10370 108 ELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFM-QADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 345566774 467777 58899999998887766 44556666666543 4555555555543
No 63
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=24.38 E-value=75 Score=21.30 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=17.9
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 12 YVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 12 ~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
....-.=|.|+|+++.+|++.++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 334445578999999999999885
No 64
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=24.29 E-value=1.2e+02 Score=23.24 Aligned_cols=26 Identities=12% Similarity=0.103 Sum_probs=12.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhc
Q 028895 11 VYVAKLAEQAERYDEMVDAMKNVAKL 36 (202)
Q Consensus 11 i~~AklaeqaeRy~dm~~~mk~~i~~ 36 (202)
..+|.+..+.|+|++.+.+...++..
T Consensus 62 ~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 62 IALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34444444444455544444444443
No 65
>KOG3089 consensus Predicted DEAD-box-containing helicase [General function prediction only]
Probab=23.83 E-value=2.8e+02 Score=24.19 Aligned_cols=80 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred hCCHHHHHHHHHHHh-hcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCc-hHHHHHHHHHHHHHH-HHH
Q 028895 20 AERYDEMVDAMKNVA-KLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGN-EVNAKRIKEYRQKVE-SEL 96 (202)
Q Consensus 20 aeRy~dm~~~mk~~i-~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~-~~~~~~i~~y~~ki~-~EL 96 (202)
.+-.++..++|+..+ +.+++|+.+|-|++-..+-..-+.. +....+ ..+| +..++.....-+++. -++
T Consensus 78 i~sPe~l~~ll~~yi~s~~~dl~~~EL~~~~~k~~~~~dt~-------~f~~~~--~~~n~P~~Iq~~~~~~kK~vf~~~ 148 (271)
T KOG3089|consen 78 IGSPEDLQKLLKDYISSRRLDLELEELNLPDSKFLKANDTT-------HFLSSY--LKGNCPKWIQLRKNHSKKKVFVLM 148 (271)
T ss_pred CCChHHHHHHHHHHHHhhcCcchhhhhcchHHHHHhhhhhh-------hhchHh--hhcccHHHHHhccCCchhhhhHHH
Confidence 378999999999999 5689999999999877655433321 111111 1222 345555555544444 888
Q ss_pred HHhHHHHHHHHh
Q 028895 97 SDICNDIMTVID 108 (202)
Q Consensus 97 ~~iC~eii~lid 108 (202)
.-+|-+++..|+
T Consensus 149 lI~c~sa~Ral~ 160 (271)
T KOG3089|consen 149 LIICSSAVRALE 160 (271)
T ss_pred HHHHHHHHHHHh
Confidence 889999999987
No 66
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=23.65 E-value=2.6e+02 Score=19.44 Aligned_cols=28 Identities=11% Similarity=-0.022 Sum_probs=23.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
-+++-.|--.+.+|+|++.+.+..+.++
T Consensus 7 i~lv~~Av~~D~~g~y~eA~~lY~~ale 34 (75)
T cd02684 7 IALVVQAVKKDQRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3567777778899999999999988875
No 67
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=23.33 E-value=3.1e+02 Score=23.77 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHh
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq 71 (202)
...++.+..+.|++++.+..++++.+.++....+-.+.+..+|-.. +..-.+.+.+....+
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~-g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL-GDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
No 68
>PF09969 DUF2203: Uncharacterized conserved protein (DUF2203); InterPro: IPR018699 This family has no known function.
Probab=23.30 E-value=3.5e+02 Score=20.75 Aligned_cols=66 Identities=17% Similarity=0.262 Sum_probs=40.7
Q ss_pred CCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 028895 40 LTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMT 105 (202)
Q Consensus 40 L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~ 105 (202)
+|.+|-|-+.-..+.++...+...+.+..+.+.-............+...+.+..++....++|-+
T Consensus 3 FTl~EA~~lLP~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 68 (120)
T PF09969_consen 3 FTLEEANALLPLLRPILEEIRELKAELEELEERLQELEDSLEVNGLEAELEELEARLRELIDEIEE 68 (120)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 677888877778888888888888888766554322211112233444555666666666666543
No 69
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=23.28 E-value=2.9e+02 Score=19.90 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=26.6
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
+....+|...-+.|+|++....++.+++.+|.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~ 49 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY 49 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC
Confidence 45677888899999999999999998887654
No 70
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=22.70 E-value=1.6e+02 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
.++-+|--+++.|||++.+.+=+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 566777788888999999888877775
No 71
>TIGR02284 conserved hypothetical protein. Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.
Probab=22.55 E-value=1.4e+02 Score=23.32 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCC
Q 028895 149 ANSMKAYETATTAAEADLPPTH 170 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~ 170 (202)
+.+.++|++|++-. .|||.-
T Consensus 98 d~~~~~y~~aL~~~--~l~~~~ 117 (139)
T TIGR02284 98 DRAKKAYDETLADQ--DTPAAA 117 (139)
T ss_pred HHHHHHHHHHHhcC--CCChHH
Confidence 35788999998632 477653
No 72
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=22.43 E-value=1.4e+02 Score=27.60 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=42.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhc
Q 028895 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIG 57 (202)
Q Consensus 11 i~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~ 57 (202)
|-+.+|.-+-|.|+-.|+....+.+.|+++..|--..|..||..+=.
T Consensus 218 i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 218 IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCC
Confidence 56788999999999999999999999999999999999999987544
No 73
>COG5506 Uncharacterized conserved protein [Function unknown]
Probab=22.34 E-value=1.6e+02 Score=23.53 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHH
Q 028895 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIM 104 (202)
Q Consensus 25 dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii 104 (202)
+|-.++.+-+--+-+++++|+..+--.|.. |++-.+-+.. +...+.|++- +.++ +
T Consensus 3 ~lddyL~kG~yG~~eiNPdEqr~yLGT~rE---------RVv~aLt~aq--------v~~~~~y~e~-E~~~-------l 57 (144)
T COG5506 3 NLDDYLLKGAYGGLEINPDEQRRYLGTFRE---------RVVLALTKAQ--------VLTQKKYKEF-ELEN-------L 57 (144)
T ss_pred cHHHHHHhhccccccCCHHHHHHHhhhhHH---------HHHHhhhhhh--------hcccccHHHH-HHHH-------h
Confidence 345566665555678999999998888776 5554332221 1112333322 2222 2
Q ss_pred HHHhhcc-CCCCCCChHHHHHHHhhc
Q 028895 105 TVIDEHL-IPSASAGESTVFFYKMKG 129 (202)
Q Consensus 105 ~lid~~L-ip~~~~~eskvFy~KmkG 129 (202)
+.-+..| +.......+.+||.||--
T Consensus 58 q~~~~~L~lng~L~~q~~~~YiklA~ 83 (144)
T COG5506 58 QNKAEPLLLNGTLEFQSQRFYIKLAK 83 (144)
T ss_pred hccccceEEeeEecHHHHhHHHHHHH
Confidence 2333333 444566789999999843
No 74
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=22.28 E-value=6.6e+02 Score=25.08 Aligned_cols=44 Identities=7% Similarity=0.074 Sum_probs=34.3
Q ss_pred chhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 028895 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVG 51 (202)
Q Consensus 5 ~~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsva 51 (202)
++.+-+..+|....+.|+|++.+....+++..++ ..+.-++|.|
T Consensus 152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p---~~~~~~~~~a 195 (694)
T PRK15179 152 SSAREILLEAKSWDEIGQSEQADACFERLSRQHP---EFENGYVGWA 195 (694)
T ss_pred CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CcHHHHHHHH
Confidence 3466778899999999999999999999987443 4455566655
No 75
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=22.17 E-value=2.7e+02 Score=18.99 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=22.2
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHH
Q 028895 25 EMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (202)
Q Consensus 25 dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 66 (202)
....-+...+..-+.++.++|+-...-....+..-..-+..+
T Consensus 3 ~l~~~i~~~l~~~~~~~~~~r~~~i~~~e~~l~ea~~~l~qM 44 (79)
T PF05008_consen 3 ALTAEIKSKLERIKNLSGEQRKSLIREIERDLDEAEELLKQM 44 (79)
T ss_dssp HHHHHHHHHHHHGGGS-CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433344445677766666666666655554444
No 76
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=21.34 E-value=2.9e+02 Score=19.05 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC--CCCHHHHHHHHhhh
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV--ELTVEERNLLSVGY 52 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~--~L~~eERnLlsvay 52 (202)
+.-.+....+.|+|++.++...+++..++ .+..+-+..+..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 49 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAY 49 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 44455556666667777766666665443 33344444444443
No 77
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=20.59 E-value=1.2e+02 Score=23.72 Aligned_cols=29 Identities=48% Similarity=0.634 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCchHHH
Q 028895 146 EAAANSMKAYETATTAAEADLPPTHPIRLG 175 (202)
Q Consensus 146 ~~~~~a~~aY~~A~~~a~~~L~pt~PirLg 175 (202)
.....|..+|..+-+++. .+|+.-||-.|
T Consensus 20 ~a~~~s~~~~~~a~~~~~-~ip~GQPIlVG 48 (126)
T PF12083_consen 20 KAAARSEAAYEAANRMAE-AIPFGQPILVG 48 (126)
T ss_pred HHHHHHHHHHHHHHHHHh-ccCCCCCeecc
Confidence 356678899999999985 79999999887
Done!