Query 028895
Match_columns 202
No_of_seqs 118 out of 523
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 06:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028895.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028895hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iqu_A 14-3-3 protein sigma; s 100.0 2.1E-86 7.3E-91 563.3 18.0 201 2-202 2-203 (236)
2 3uzd_A 14-3-3 protein gamma; s 100.0 2.8E-85 9.6E-90 559.7 19.2 197 6-202 3-201 (248)
3 3ubw_A 14-3-3E, 14-3-3 protein 100.0 3.5E-85 1.2E-89 561.6 19.9 198 5-202 29-226 (261)
4 1o9d_A 14-3-3-like protein C; 100.0 2.4E-83 8.3E-88 551.6 20.5 202 1-202 1-205 (260)
5 2br9_A 14-3-3E, 14-3-3 protein 100.0 5.1E-83 1.7E-87 543.0 19.9 197 6-202 4-200 (234)
6 2npm_A 14-3-3 domain containin 100.0 2E-82 6.7E-87 545.6 19.1 197 5-202 26-225 (260)
7 2o8p_A 14-3-3 domain containin 100.0 3E-81 1E-85 528.2 18.0 187 6-202 2-195 (227)
8 3efz_A 14-3-3 protein; 14-3-3, 100.0 2.1E-81 7.2E-86 539.5 13.9 193 6-202 28-224 (268)
9 3edt_B KLC 2, kinesin light ch 94.2 1 3.5E-05 34.7 12.3 53 148-201 143-195 (283)
10 3vtx_A MAMA; tetratricopeptide 91.3 3.3 0.00011 30.4 15.5 58 8-67 6-63 (184)
11 3nf1_A KLC 1, kinesin light ch 90.7 5 0.00017 31.4 20.2 179 8-201 28-221 (311)
12 3ulq_A Response regulator aspa 90.5 3.4 0.00011 34.5 11.5 69 120-201 101-169 (383)
13 3n71_A Histone lysine methyltr 90.3 1.8 6.2E-05 39.4 10.2 94 94-201 326-419 (490)
14 3qwp_A SET and MYND domain-con 89.7 0.66 2.3E-05 41.4 6.7 52 149-201 346-397 (429)
15 4b4t_Q 26S proteasome regulato 88.6 9.8 0.00033 31.7 15.3 178 10-201 58-242 (434)
16 4a1s_A PINS, partner of inscut 88.2 9.9 0.00034 31.3 21.2 185 8-201 49-249 (411)
17 3qww_A SET and MYND domain-con 87.5 1.2 4E-05 40.0 6.8 52 149-201 315-366 (433)
18 3edt_B KLC 2, kinesin light ch 87.3 4.6 0.00016 30.9 9.5 88 100-201 24-111 (283)
19 4g1t_A Interferon-induced prot 87.1 13 0.00043 31.4 16.0 48 149-201 351-398 (472)
20 3lf9_A 4E10_D0_1IS1A_001_C (T1 86.8 2.3 7.9E-05 32.0 7.0 86 21-111 11-103 (121)
21 3qww_A SET and MYND domain-con 86.7 4.7 0.00016 36.0 10.3 94 94-201 315-408 (433)
22 3q15_A PSP28, response regulat 86.2 5.4 0.00019 33.3 10.0 70 119-201 98-167 (378)
23 3u4t_A TPR repeat-containing p 86.2 9.8 0.00034 29.2 14.8 51 150-201 197-247 (272)
24 3n71_A Histone lysine methyltr 84.6 1.9 6.7E-05 39.1 6.8 52 149-201 326-377 (490)
25 3ro2_A PINS homolog, G-protein 84.4 13 0.00043 28.9 16.4 50 149-201 200-249 (338)
26 3hym_B Cell division cycle pro 84.4 13 0.00045 29.1 15.9 45 148-201 252-296 (330)
27 3qwp_A SET and MYND domain-con 83.1 1.5 5E-05 39.1 5.2 52 149-201 304-355 (429)
28 3u4t_A TPR repeat-containing p 81.8 16 0.00053 28.1 11.5 33 7-39 3-35 (272)
29 3ro3_A PINS homolog, G-protein 81.3 11 0.00036 25.8 13.0 145 9-201 11-155 (164)
30 3u3w_A Transcriptional activat 81.2 19 0.00065 28.7 16.4 69 121-201 154-222 (293)
31 2xpi_A Anaphase-promoting comp 81.2 27 0.00091 30.4 17.2 45 148-201 532-576 (597)
32 1fch_A Peroxisomal targeting s 81.0 20 0.00068 28.8 13.2 57 9-67 100-156 (368)
33 3ro2_A PINS homolog, G-protein 78.8 21 0.0007 27.6 21.2 184 8-201 6-209 (338)
34 3u3w_A Transcriptional activat 78.7 11 0.00038 30.2 8.8 87 102-201 93-181 (293)
35 4gcn_A Protein STI-1; structur 78.1 5.3 0.00018 28.2 6.0 45 148-201 24-68 (127)
36 3sf4_A G-protein-signaling mod 78.1 26 0.00087 28.3 21.6 185 8-201 10-213 (406)
37 4a1s_A PINS, partner of inscut 77.6 28 0.00095 28.5 17.2 173 10-201 89-289 (411)
38 4i17_A Hypothetical protein; T 77.4 21 0.00071 26.9 12.8 59 8-67 8-66 (228)
39 3ieg_A DNAJ homolog subfamily 75.1 28 0.00097 27.3 17.0 45 148-201 288-332 (359)
40 3fp2_A TPR repeat-containing p 74.6 39 0.0013 28.7 15.9 45 148-201 444-488 (537)
41 2y4t_A DNAJ homolog subfamily 74.3 36 0.0012 28.2 14.9 45 148-201 311-355 (450)
42 4gfq_A Ribosome-recycling fact 73.9 6 0.0002 32.4 5.8 73 38-111 127-199 (209)
43 3qky_A Outer membrane assembly 72.2 32 0.0011 26.6 16.0 64 7-71 15-80 (261)
44 4abn_A Tetratricopeptide repea 72.2 49 0.0017 28.8 15.7 170 9-201 104-284 (474)
45 3ulq_A Response regulator aspa 71.6 41 0.0014 27.6 18.3 171 12-201 108-290 (383)
46 2gw1_A Mitochondrial precursor 71.4 44 0.0015 28.0 14.5 53 148-201 205-263 (514)
47 3ieg_A DNAJ homolog subfamily 71.2 35 0.0012 26.7 18.1 56 11-68 124-179 (359)
48 3ro3_A PINS homolog, G-protein 70.7 22 0.00075 24.1 9.4 69 120-201 47-115 (164)
49 3sf4_A G-protein-signaling mod 69.7 42 0.0014 27.0 19.7 173 10-201 50-253 (406)
50 1dd5_A Ribosome recycling fact 68.7 9.8 0.00033 30.5 5.8 73 38-111 103-175 (185)
51 3cv0_A Peroxisome targeting si 68.4 39 0.0014 26.2 14.6 58 8-67 22-79 (327)
52 2qfc_A PLCR protein; TPR, HTH, 68.2 43 0.0015 26.6 17.0 172 8-199 76-261 (293)
53 2pl2_A Hypothetical conserved 67.3 39 0.0013 25.7 13.0 32 8-39 6-37 (217)
54 1xi4_A Clathrin heavy chain; a 67.3 22 0.00074 37.3 9.3 23 179-201 1284-1306(1630)
55 1ise_A Ribosome recycling fact 67.1 10 0.00035 30.4 5.7 73 38-111 103-175 (185)
56 4gyw_A UDP-N-acetylglucosamine 66.6 88 0.003 29.5 14.5 57 8-66 10-66 (723)
57 1is1_A Ribosome recycling fact 66.2 11 0.00037 30.2 5.6 73 38-111 103-175 (185)
58 1elr_A TPR2A-domain of HOP; HO 65.9 18 0.00062 23.8 6.2 51 149-201 55-105 (131)
59 1eh1_A Ribosome recycling fact 65.9 10 0.00035 30.4 5.4 73 38-111 104-176 (185)
60 3rkv_A Putative peptidylprolyl 65.6 8.6 0.0003 27.7 4.7 53 148-201 27-89 (162)
61 2y4t_A DNAJ homolog subfamily 65.5 57 0.0019 26.9 18.2 166 10-201 146-321 (450)
62 1wqg_A Ribosome recycling fact 65.0 12 0.0004 30.0 5.6 73 38-111 103-175 (185)
63 3hym_B Cell division cycle pro 64.9 47 0.0016 25.8 15.9 53 148-201 209-262 (330)
64 1fch_A Peroxisomal targeting s 64.8 52 0.0018 26.2 17.0 58 8-67 65-122 (368)
65 1ge9_A Ribosome recycling fact 64.6 22 0.00075 28.4 7.1 70 38-111 105-174 (184)
66 4g1t_A Interferon-induced prot 63.7 13 0.00044 31.4 6.0 51 149-200 68-119 (472)
67 2xpi_A Anaphase-promoting comp 63.5 73 0.0025 27.5 18.0 52 148-201 491-542 (597)
68 3fp2_A TPR repeat-containing p 63.1 69 0.0023 27.1 16.8 52 150-201 213-269 (537)
69 2q7f_A YRRB protein; TPR, prot 62.4 45 0.0015 24.7 15.3 58 8-67 58-115 (243)
70 4gco_A Protein STI-1; structur 59.7 23 0.00079 24.8 6.0 44 149-201 30-73 (126)
71 4gcn_A Protein STI-1; structur 59.0 37 0.0013 23.6 7.0 51 149-201 59-109 (127)
72 3bee_A Putative YFRE protein; 58.6 13 0.00043 25.5 4.2 31 9-39 45-75 (93)
73 2qfc_A PLCR protein; TPR, HTH, 57.8 44 0.0015 26.5 8.1 69 120-201 153-222 (293)
74 2pl2_A Hypothetical conserved 56.7 62 0.0021 24.5 15.8 45 8-53 40-84 (217)
75 4eqf_A PEX5-related protein; a 56.3 76 0.0026 25.4 16.4 58 8-67 66-123 (365)
76 2dba_A Smooth muscle cell asso 54.6 27 0.00093 23.7 5.5 12 188-199 112-123 (148)
77 1qqe_A Vesicular transport pro 54.3 80 0.0027 25.1 12.7 29 9-37 39-67 (292)
78 3ma5_A Tetratricopeptide repea 54.1 44 0.0015 22.0 10.3 57 8-66 8-64 (100)
79 4ga2_A E3 SUMO-protein ligase 53.0 36 0.0012 24.3 6.3 31 10-40 34-64 (150)
80 2l6j_A TPR repeat-containing p 52.6 40 0.0014 21.6 6.0 44 149-201 21-64 (111)
81 2vq2_A PILW, putative fimbrial 51.7 65 0.0022 23.2 15.3 57 9-67 10-66 (225)
82 4eqf_A PEX5-related protein; a 51.6 91 0.0031 24.9 16.9 58 8-67 100-157 (365)
83 3sz7_A HSC70 cochaperone (SGT) 51.0 63 0.0022 22.9 7.4 14 187-200 91-104 (164)
84 1qqe_A Vesicular transport pro 50.9 42 0.0014 26.8 6.9 50 149-201 54-103 (292)
85 1na3_A Designed protein CTPR2; 50.4 42 0.0014 20.7 6.0 44 149-201 26-69 (91)
86 1ya0_A SMG-7 transcript varian 50.2 15 0.00051 33.6 4.3 25 128-162 158-182 (497)
87 3k9i_A BH0479 protein; putativ 48.9 46 0.0016 22.3 6.0 44 149-201 44-87 (117)
88 4gco_A Protein STI-1; structur 48.5 38 0.0013 23.6 5.6 58 9-68 49-106 (126)
89 2kat_A Uncharacterized protein 46.6 60 0.0021 21.4 11.9 58 8-67 20-77 (115)
90 2ho1_A Type 4 fimbrial biogene 45.5 92 0.0032 23.2 13.9 57 9-67 39-95 (252)
91 2hr2_A Hypothetical protein; a 44.7 41 0.0014 25.9 5.5 46 149-201 74-128 (159)
92 2gw1_A Mitochondrial precursor 44.6 1.4E+02 0.0046 24.9 15.0 57 9-67 306-362 (514)
93 2wh5_A Acyl-COA-binding domain 44.3 33 0.0011 24.8 4.6 47 21-67 10-73 (106)
94 1lyp_A CAP18; lipopolysacchari 43.4 42 0.0014 18.7 4.4 27 83-109 4-30 (32)
95 3rkv_A Putative peptidylprolyl 43.4 43 0.0015 23.8 5.3 57 9-67 65-121 (162)
96 1elr_A TPR2A-domain of HOP; HO 43.3 65 0.0022 20.8 6.0 41 9-51 81-121 (131)
97 3k9i_A BH0479 protein; putativ 43.3 71 0.0024 21.3 8.3 58 8-67 28-85 (117)
98 2ifu_A Gamma-SNAP; membrane fu 42.4 1.3E+02 0.0044 24.0 15.2 51 148-201 171-221 (307)
99 2q7f_A YRRB protein; TPR, prot 42.2 99 0.0034 22.6 10.5 58 8-67 24-81 (243)
100 1hxi_A PEX5, peroxisome target 41.9 74 0.0025 21.8 6.2 58 8-67 18-75 (121)
101 3ma5_A Tetratricopeptide repea 41.8 72 0.0024 20.9 6.3 45 148-201 23-67 (100)
102 3caz_A BAR protein; thermo-aci 41.6 1.4E+02 0.0048 24.3 10.0 110 13-163 100-209 (294)
103 2kat_A Uncharacterized protein 40.8 75 0.0026 20.9 6.0 45 148-201 35-79 (115)
104 1na3_A Designed protein CTPR2; 40.8 53 0.0018 20.2 4.9 59 8-68 10-68 (91)
105 3qky_A Outer membrane assembly 40.3 1.2E+02 0.0041 23.1 10.8 59 11-69 152-221 (261)
106 3cv0_A Peroxisome targeting si 40.1 1.2E+02 0.0043 23.2 13.6 56 9-66 57-112 (327)
107 2ifu_A Gamma-SNAP; membrane fu 39.1 82 0.0028 25.2 6.9 50 148-201 131-181 (307)
108 2ho1_A Type 4 fimbrial biogene 38.5 1.2E+02 0.0041 22.5 15.3 60 8-69 72-131 (252)
109 1ihg_A Cyclophilin 40; ppiase 38.2 39 0.0013 28.7 5.0 52 149-201 240-299 (370)
110 2kc7_A BFR218_protein; tetratr 38.2 74 0.0025 20.1 5.4 31 10-40 3-33 (99)
111 2xcb_A PCRH, regulatory protei 38.1 98 0.0033 21.4 10.6 29 10-38 21-49 (142)
112 2r5s_A Uncharacterized protein 37.9 71 0.0024 23.0 5.8 33 8-40 109-141 (176)
113 2kc7_A BFR218_protein; tetratr 37.7 55 0.0019 20.8 4.7 33 9-41 37-69 (99)
114 3sz7_A HSC70 cochaperone (SGT) 37.6 1.1E+02 0.0036 21.6 11.3 29 10-38 14-42 (164)
115 2l6j_A TPR repeat-containing p 37.5 49 0.0017 21.2 4.4 29 9-37 6-34 (111)
116 2h6f_A Protein farnesyltransfe 37.4 1.9E+02 0.0065 24.5 11.8 47 10-57 203-249 (382)
117 3gyz_A Chaperone protein IPGC; 36.4 1.2E+02 0.0042 22.0 9.5 44 8-52 37-80 (151)
118 4gyw_A UDP-N-acetylglucosamine 36.1 2.8E+02 0.0095 26.0 12.5 32 9-40 45-76 (723)
119 2kck_A TPR repeat; tetratricop 36.0 80 0.0027 19.8 8.0 26 12-37 11-36 (112)
120 2vyi_A SGTA protein; chaperone 35.2 89 0.003 20.0 6.2 58 9-68 48-105 (131)
121 2e2e_A Formate-dependent nitri 34.9 1.2E+02 0.0041 21.4 11.3 29 10-38 47-75 (177)
122 1xnf_A Lipoprotein NLPI; TPR, 34.7 1.4E+02 0.0048 22.3 15.5 55 10-66 46-100 (275)
123 2lbb_A Acyl COA binding protei 34.7 56 0.0019 23.2 4.5 35 20-56 11-45 (96)
124 4h7y_A Dual specificity protei 34.6 85 0.0029 24.5 5.8 75 113-201 8-86 (161)
125 1tdp_A Carnobacteriocin B2 imm 34.1 1.3E+02 0.0045 22.0 6.5 66 46-129 10-82 (111)
126 3lhp_S 4E10_D0_1ISEA_004_N (T9 33.4 1.5E+02 0.0051 22.1 6.8 76 30-111 34-113 (123)
127 1hbk_A ACBP, acyl-COA binding 33.0 1.1E+02 0.0037 21.1 5.8 35 21-56 4-38 (89)
128 1hxi_A PEX5, peroxisome target 33.0 97 0.0033 21.1 5.6 29 11-39 55-83 (121)
129 2ond_A Cleavage stimulation fa 32.9 67 0.0023 25.7 5.3 46 148-201 115-160 (308)
130 1hh8_A P67PHOX, NCF-2, neutrop 32.4 1E+02 0.0035 22.4 6.0 44 149-201 54-97 (213)
131 3gyz_A Chaperone protein IPGC; 32.1 58 0.002 23.8 4.5 27 13-39 76-102 (151)
132 3flv_A Acyl-COA-binding domain 31.4 1.6E+02 0.0053 21.7 7.0 36 21-56 26-62 (119)
133 1elw_A TPR1-domain of HOP; HOP 31.1 1E+02 0.0034 19.4 6.0 59 7-67 4-62 (118)
134 1xnf_A Lipoprotein NLPI; TPR, 31.1 1.6E+02 0.0056 21.9 12.5 57 9-67 79-135 (275)
135 2fbn_A 70 kDa peptidylprolyl i 31.0 1.2E+02 0.0041 22.1 6.2 58 9-68 90-147 (198)
136 3nf1_A KLC 1, kinesin light ch 31.0 1.7E+02 0.0059 22.1 19.1 177 10-201 72-304 (311)
137 2hr2_A Hypothetical protein; a 30.9 1.3E+02 0.0045 22.9 6.4 52 148-201 27-83 (159)
138 4abn_A Tetratricopeptide repea 30.0 2.7E+02 0.0091 24.0 12.6 161 18-201 79-247 (474)
139 3iyk_A VP5; icosahedral virus; 29.5 2.5E+02 0.0087 25.8 8.9 87 7-93 107-199 (526)
140 2dba_A Smooth muscle cell asso 29.4 92 0.0032 20.8 5.0 59 8-68 66-124 (148)
141 2vq2_A PILW, putative fimbrial 29.3 1.6E+02 0.0053 21.1 14.3 60 9-69 44-103 (225)
142 3uq3_A Heat shock protein STI1 28.8 1.7E+02 0.0059 21.4 14.6 32 8-39 80-111 (258)
143 2vgx_A Chaperone SYCD; alterna 28.8 1.5E+02 0.0052 20.9 6.3 32 8-39 22-53 (148)
144 3uq3_A Heat shock protein STI1 28.1 1.8E+02 0.006 21.3 18.5 56 8-66 6-61 (258)
145 3vtx_A MAMA; tetratricopeptide 27.8 71 0.0024 22.8 4.3 30 10-39 110-139 (184)
146 1na0_A Designed protein CTPR3; 27.2 1.1E+02 0.0039 19.3 4.9 59 9-69 45-103 (125)
147 2g0u_A Type III secretion syst 27.1 75 0.0026 22.6 4.0 52 129-184 12-67 (92)
148 3q15_A PSP28, response regulat 26.4 2.6E+02 0.0088 22.6 19.1 171 11-201 105-287 (378)
149 3cjl_A Domain of unknown funct 26.2 30 0.001 24.4 1.7 34 20-54 24-57 (88)
150 2v5f_A Prolyl 4-hydroxylase su 25.8 1.5E+02 0.0051 19.7 6.7 51 149-201 22-72 (104)
151 3onj_A T-snare VTI1; helix, HA 25.5 1.7E+02 0.0059 20.3 8.9 76 23-99 10-88 (97)
152 2xcb_A PCRH, regulatory protei 25.3 96 0.0033 21.4 4.5 24 14-37 59-82 (142)
153 1zu2_A Mitochondrial import re 24.4 1.2E+02 0.004 23.2 5.0 68 129-201 43-117 (158)
154 4ga2_A E3 SUMO-protein ligase 24.3 91 0.0031 22.1 4.3 33 8-40 66-98 (150)
155 2w2u_A Hypothetical P60 katani 22.8 1.1E+02 0.0037 20.8 4.1 27 9-35 21-47 (83)
156 1wao_1 Serine/threonine protei 22.8 1.4E+02 0.0049 26.0 6.0 12 150-161 24-35 (477)
157 2wb7_A PT26-6P; extra chromoso 22.5 1.1E+02 0.0037 28.3 5.1 54 136-190 436-489 (526)
158 2vgx_A Chaperone SYCD; alterna 22.4 2.1E+02 0.0071 20.1 9.0 57 9-67 57-113 (148)
159 2efl_A Formin-binding protein 22.0 2.2E+02 0.0075 22.8 6.7 16 148-163 188-203 (305)
160 3qou_A Protein YBBN; thioredox 22.0 1.5E+02 0.0051 23.5 5.5 33 8-40 220-252 (287)
161 3as5_A MAMA; tetratricopeptide 21.8 1.9E+02 0.0067 19.6 14.2 56 10-67 11-66 (186)
162 2c2l_A CHIP, carboxy terminus 21.8 1.7E+02 0.006 23.0 5.9 14 187-200 84-97 (281)
163 2e2e_A Formate-dependent nitri 20.9 1.3E+02 0.0043 21.3 4.5 29 10-38 81-112 (177)
164 1w3b_A UDP-N-acetylglucosamine 20.8 3.2E+02 0.011 21.8 13.8 31 10-40 104-134 (388)
165 1a17_A Serine/threonine protei 20.1 2.1E+02 0.0072 19.3 7.5 58 9-68 49-106 (166)
No 1
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=100.00 E-value=2.1e-86 Score=563.34 Aligned_cols=201 Identities=52% Similarity=0.852 Sum_probs=195.9
Q ss_pred CCcc-hhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchH
Q 028895 2 ASSK-ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEV 80 (202)
Q Consensus 2 ~m~~-~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 80 (202)
||+. +|++++|+|||||||||||||+++||++++.+++||.||||||||||||+||++|+|||+|+++||+++.+|++.
T Consensus 2 ~~~~~~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissieqke~~~~~~~ 81 (236)
T 3iqu_A 2 AMGSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIEQKSNEEGSEE 81 (236)
T ss_dssp TTTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred CcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcCCHH
Confidence 4553 799999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHH
Q 028895 81 NAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATT 160 (202)
Q Consensus 81 ~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~ 160 (202)
+++.+++||++|++||..+|++|+++||++|||+++++|++|||+|||||||||+|||..|++|++++++|++||++|++
T Consensus 82 ~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~ 161 (236)
T 3iqu_A 82 KGPEVREYREKVETELQGVCDTVLGLLDSHLIKEAGDAESRVFYLKMKGDYYRYLAEVATGDDKKRIIDSARSAYQEAMD 161 (236)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccCCchHHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 161 AAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 161 ~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
+|+++||||||||||||||||||||||+|+|++||.+|++||
T Consensus 162 iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Af 203 (236)
T 3iqu_A 162 ISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTF 203 (236)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999899999999999999999999999999999999999986
No 2
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=100.00 E-value=2.8e-85 Score=559.68 Aligned_cols=197 Identities=54% Similarity=0.891 Sum_probs=190.4
Q ss_pred hhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHH
Q 028895 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (202)
Q Consensus 6 ~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i 85 (202)
+|++++|+|||+|||||||||+++||++++.+++||.||||||||||||+||++|+|||+|+++||+++.+|++.+++.+
T Consensus 3 ~re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissieqke~~~~~~~~~~~i 82 (248)
T 3uzd_A 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVISSIEQKTSADGNEKKIEMV 82 (248)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCC-HHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999877888899999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCC--hHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHh
Q 028895 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASAG--ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (202)
Q Consensus 86 ~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~--eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 163 (202)
++||++|++||..+|++|+++||++|||.++++ |++|||+|||||||||+|||..|++|++++++|++||++|+++|+
T Consensus 83 ~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~~~eskVFY~KmKGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~ 162 (248)
T 3uzd_A 83 RAYREKIEKELEAVCQDVLSLLDNYLIKNCSETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISK 162 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCTTCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhcCCcCCCcchhHHHHHHHhhhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 164 ADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 164 ~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
.+||||||||||||||||||||||+|+|++||.||++||
T Consensus 163 ~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Af 201 (248)
T 3uzd_A 163 EHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAF 201 (248)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred hhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999986
No 3
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.5e-85 Score=561.56 Aligned_cols=198 Identities=70% Similarity=1.071 Sum_probs=194.5
Q ss_pred chhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHH
Q 028895 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (202)
Q Consensus 5 ~~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~ 84 (202)
.+|++++|+|||+|||||||||+++||++++.+++||.||||||||||||+||++|+|||+|+++||+++.+|++.+++.
T Consensus 29 ~~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissieqkee~~g~~~~~~~ 108 (261)
T 3ubw_A 29 DDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKM 108 (261)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHHHhhhccccHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhc
Q 028895 85 IKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEA 164 (202)
Q Consensus 85 i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~ 164 (202)
+++||++|++||..+|++|+++||++|||+++++|++|||+|||||||||+|||..|++|++++++|++||++|+++|++
T Consensus 109 i~~yr~kIe~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~ 188 (261)
T 3ubw_A 109 IREYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMT 188 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcHHHHHHHHHhhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 165 DLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 165 ~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
+||||||||||||||||||||||+|+|++||.||++||
T Consensus 189 ~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AF 226 (261)
T 3ubw_A 189 ELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 226 (261)
T ss_dssp HSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred hCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999986
No 4
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=100.00 E-value=2.4e-83 Score=551.56 Aligned_cols=202 Identities=63% Similarity=0.992 Sum_probs=195.3
Q ss_pred CC-CcchhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcC--CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhC
Q 028895 1 MA-SSKERENFVYVAKLAEQAERYDEMVDAMKNVAKLD--VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKG 77 (202)
Q Consensus 1 ~~-m~~~re~li~~AklaeqaeRy~dm~~~mk~~i~~~--~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~ 77 (202)
|+ |+++|++++|+|||++||||||||+++||++++.+ ++||.||||||||||||+||++|+|||+|+++||+++.+|
T Consensus 1 ~~~~~~~re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiissieqke~~k~ 80 (260)
T 1o9d_A 1 MAVAPTAREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRG 80 (260)
T ss_dssp ----CCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccccHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhccC
Confidence 44 56789999999999999999999999999999998 9999999999999999999999999999999999998888
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHH
Q 028895 78 NEVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYET 157 (202)
Q Consensus 78 ~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~ 157 (202)
++.+++.|++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++
T Consensus 81 ~~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~ 160 (260)
T 1o9d_A 81 NEEHVNSIREYRSKIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLTAYKA 160 (260)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCCCCchhHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 158 ATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 158 A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
|+++|+.+||||||||||||||||||||||+|+|++||.||++||
T Consensus 161 A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 205 (260)
T 1o9d_A 161 AQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 205 (260)
T ss_dssp HHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999899999999999999999999999999999999999986
No 5
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=100.00 E-value=5.1e-83 Score=542.99 Aligned_cols=197 Identities=70% Similarity=1.075 Sum_probs=193.9
Q ss_pred hhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHH
Q 028895 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRI 85 (202)
Q Consensus 6 ~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i 85 (202)
+|++++|+|||++||||||||+++||++++.+++||.||||||||||||+||++|+|||+|+++||+++.+|++.+++.+
T Consensus 4 ~re~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~~~~~~~i 83 (234)
T 2br9_A 4 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGGEDKLKMI 83 (234)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCchHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhcc
Q 028895 86 KEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEAD 165 (202)
Q Consensus 86 ~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~ 165 (202)
++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|+++|++|+++|+.+
T Consensus 84 ~~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~ 163 (234)
T 2br9_A 84 REYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTE 163 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred CCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 166 LPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 166 L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
||||||+|||||||||||||||+|+|++||.+|++||
T Consensus 164 L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~af 200 (234)
T 2br9_A 164 LPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAF 200 (234)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986
No 6
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=100.00 E-value=2e-82 Score=545.64 Aligned_cols=197 Identities=59% Similarity=0.947 Sum_probs=192.3
Q ss_pred chhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcC---CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHH
Q 028895 5 KERENFVYVAKLAEQAERYDEMVDAMKNVAKLD---VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVN 81 (202)
Q Consensus 5 ~~re~li~~AklaeqaeRy~dm~~~mk~~i~~~---~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~ 81 (202)
.+|++++|+|||++||||||||+++||++++.+ ++||.||||||||||||+||++|+|||+|+++||+++.+|++.+
T Consensus 26 ~~re~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~ 105 (260)
T 2npm_A 26 NARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDA 105 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHH
Confidence 469999999999999999999999999999998 99999999999999999999999999999999999988888889
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHH
Q 028895 82 AKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTA 161 (202)
Q Consensus 82 ~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~ 161 (202)
++.|++||++|++||..+|++|+++||++|||.++++|++|||+|||||||||+|||..|++|++++++|++||++|+++
T Consensus 106 ~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~i 185 (260)
T 2npm_A 106 SKMCGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVV 185 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 162 AEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 162 a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
| .+||||||||||||||||||||||+|+|++||.||++||
T Consensus 186 A-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Af 225 (260)
T 2npm_A 186 A-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225 (260)
T ss_dssp H-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred H-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9 899999999999999999999999999999999999986
No 7
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=100.00 E-value=3e-81 Score=528.19 Aligned_cols=187 Identities=22% Similarity=0.232 Sum_probs=181.7
Q ss_pred hhHhHH---HHHHHHHHhCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCc
Q 028895 6 ERENFV---YVAKLAEQAERYDEMVDAMKNVAK----LDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGN 78 (202)
Q Consensus 6 ~re~li---~~AklaeqaeRy~dm~~~mk~~i~----~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~ 78 (202)
+|++++ |+|||+|||||||||+++||++++ .+++||.||||||||||||+||++|+|||+|+++||++ +|+
T Consensus 2 ~re~~v~~~~~AKlaeqaeRyddM~~~mk~v~~~~~~~~~eLt~EERnLLSvAYKNvig~rR~swRiissiEqke--k~~ 79 (227)
T 2o8p_A 2 EMDERLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFENSEFDDEERHLLTLCIKHKISDYRTMTSQVLQEQTKQ--LNN 79 (227)
T ss_dssp -CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--CSC
T ss_pred cHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHH--cCC
Confidence 589999 999999999999999999999999 89999999999999999999999999999999999998 678
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHH
Q 028895 79 EVNAKRIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETA 158 (202)
Q Consensus 79 ~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 158 (202)
+.+++.+++||++|++||..+|++|+++||++|||++ |++|||+|||||||||+|||..|+ +++|++||++|
T Consensus 80 ~~~~~~i~~yr~kie~EL~~iC~dil~lld~~Lip~a---EskVFY~KMKGDYyRYlAE~~~g~-----~e~a~~aY~~A 151 (227)
T 2o8p_A 80 DELVKICSEYVFSLRKDIKAFLQSFEDCVDRLVEKSF---FSKFFKLKVKSDISRYKLEFGLCS-----LEDSKKIHQDA 151 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSH---HHHHHHHHHHHHHHHHHHHTTSSC-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccCcH---HHHHHHHHHhhhHHHHHHHHcccc-----HHHHHHHHHHH
Confidence 8899999999999999999999999999999999998 999999999999999999999998 88999999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 159 TTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 159 ~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
+++|+++||||||||||||||||||||||+|+|++||.+|++||
T Consensus 152 ~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Af 195 (227)
T 2o8p_A 152 FTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLG 195 (227)
T ss_dssp HHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 99999899999999999999999999999999999999999986
No 8
>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*
Probab=100.00 E-value=2.1e-81 Score=539.46 Aligned_cols=193 Identities=23% Similarity=0.372 Sum_probs=166.3
Q ss_pred hhHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhH-hhhCc-hHHHH
Q 028895 6 ERENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EAKGN-EVNAK 83 (202)
Q Consensus 6 ~re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~-~~~~~-~~~~~ 83 (202)
+|++++|+|||+|||||||||+++| ++.+++||.||||||||||||+||++|+|||+|+++||++ +.+|+ +.+++
T Consensus 28 ~r~~lv~~AKLaeqaeRYddMv~~M---~e~~~eLs~EERNLLSvAYKNvIgarR~swRiissieqke~e~kg~~~~~~~ 104 (268)
T 3efz_A 28 KLSEGAYRAKLADMVGNYKDVIKVL---TESSDFRDNSLILLLAGSLRNRVTSIRNSLKSIKSQEEKLRKEKSLNNEFIQ 104 (268)
T ss_dssp ------------------CHHHHHH---TC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHH---HhcCCcCCHHHHHHHHHHHHhhhccchHHHHHHHHHHHHhhhccCChHHHHH
Confidence 5999999999999999999999999 7889999999999999999999999999999999999999 67787 88999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHh
Q 028895 84 RIKEYRQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (202)
Q Consensus 84 ~i~~y~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 163 (202)
.+++||++|++||..+|++|+++||++|||.++++ ++|||+|||||||||+|||..|++|++++++|++||++|+++|+
T Consensus 105 ~i~~yr~kie~EL~~iC~diL~llD~~Lip~a~~~-skVFY~KMKGDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~ 183 (268)
T 3efz_A 105 VIEDIKRDFEESILLESEDVIRIIDDNLLMYSEEG-ARAFCIKLKGDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRER 183 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCCHH-HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCch-hHHHHHhccchHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred ccC--CCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhhC
Q 028895 164 ADL--PPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHCW 202 (202)
Q Consensus 164 ~~L--~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~~ 202 (202)
++| |||||||||||||||||||||+|+|++||.+|++||
T Consensus 184 ~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AF 224 (268)
T 3efz_A 184 SFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAI 224 (268)
T ss_dssp HHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 889 999999999999999999999999999999999986
No 9
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=94.20 E-value=1 Score=34.69 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++.+...++.+|.......|.+..+ .-+|+.++|....+.+
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCY-LKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 3568999999999988778888888777777776555 4579999999887765
No 10
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=91.30 E-value=3.3 Score=30.37 Aligned_cols=58 Identities=22% Similarity=0.255 Sum_probs=39.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
+-...++.+..+-|+|++.+++.+++++.+|.- .+=...+..+|-. .+....+...+.
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~~~~~~a~~~~~ 63 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNN-VETLLKLGKTYMD-IGLPNDAIESLK 63 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 345568899999999999999999999988763 4445555555543 344444444443
No 11
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=90.70 E-value=5 Score=31.36 Aligned_cols=179 Identities=14% Similarity=0.107 Sum_probs=96.0
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhc-------CCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhh-Hhh--hC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKL-------DVELTVEERNLLSVGYKNVIGARRASWRILSSIEQK-EEA--KG 77 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~-------~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~-~~~--~~ 77 (202)
+-+..++.+....|+|++.+.+.+++++. +.+....-...+..+|-. .+....|...+...... ... ..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRD-QNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 44667888999999999999999998864 222223333344444432 33344444444321111 110 00
Q ss_pred chHHH----HHHHHHH-HHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHH
Q 028895 78 NEVNA----KRIKEYR-QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSM 152 (202)
Q Consensus 78 ~~~~~----~~i~~y~-~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~ 152 (202)
..... .+..-|. ..--++-...+...+++.....-+. +......+-..|..|... |+ .+.|.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~-----~~-----~~~A~ 173 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD---HPDVAKQLNNLALLCQNQ-----GK-----YEEVE 173 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTT-----TC-----HHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHc-----CC-----HHHHH
Confidence 01100 0001110 0011233344444454443322111 223334444445544322 11 35689
Q ss_pred HHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 153 KAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 153 ~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
..|++|+++.....++.+|.......+.+..+ .-+|+.++|....+.|
T Consensus 174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCY-LKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHH
Confidence 99999999998777788888777777776554 5579999999887765
No 12
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=90.47 E-value=3.4 Score=34.48 Aligned_cols=69 Identities=14% Similarity=0.068 Sum_probs=46.3
Q ss_pred HHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhh
Q 028895 120 STVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYM 199 (202)
Q Consensus 120 skvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~ 199 (202)
...+|+-.+|.++...-. -+.|...|++|.++++. . .+|...+.+++.--..|-.+|+.++|+...+
T Consensus 101 l~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~-~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQRE----------YLSAIKFFKKAESKLIF-V--KDRIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGG-C--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHhh-C--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445677778887654322 35689999999998864 3 2444455555544455556999999998876
Q ss_pred hh
Q 028895 200 HC 201 (202)
Q Consensus 200 ~~ 201 (202)
.|
T Consensus 168 ~a 169 (383)
T 3ulq_A 168 QA 169 (383)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 13
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=90.28 E-value=1.8 Score=39.36 Aligned_cols=94 Identities=5% Similarity=0.004 Sum_probs=65.0
Q ss_pred HHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchH
Q 028895 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIR 173 (202)
Q Consensus 94 ~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~Pir 173 (202)
+|-..+|...+++-.+.|=|... ...=-+.-.|.-|+..-. -+.|...|++|+++-+..++|.||--
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp---~~a~~~~nLa~~y~~~g~----------~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNL---YVLRLLSIASEVLSYLQA----------YEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSH---HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 45566777778777666644421 122222223333322211 24689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 174 LGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 174 LgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+....|.++.|+. .|+.++|..+.+.|
T Consensus 393 a~~l~nLa~~~~~-~G~~~eA~~~~~~A 419 (490)
T 3n71_A 393 GMAVMRAGLTNWH-AGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence 9988899887665 69999999988776
No 14
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.67 E-value=0.66 Score=41.36 Aligned_cols=52 Identities=8% Similarity=0.038 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++-+..++|.||.......|.++.|.. .|+.++|..+.+.|
T Consensus 346 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~-~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 346 EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH-QGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHH
Confidence 56899999999999989999999999999999887655 88999999988776
No 15
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.57 E-value=9.8 Score=31.73 Aligned_cols=178 Identities=11% Similarity=0.062 Sum_probs=88.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHH-----HHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHH
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEE-----RNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKR 84 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eE-----RnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~ 84 (202)
+..++++....|+|+++.++++++....+.++... ++++...+. ..+..-.+..............++......
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQ-VPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCS-CCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 67889999999999999999999887655555432 222322221 112222222222111111111111111111
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhcc--CCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHH
Q 028895 85 IKEYRQKVESELSDICNDIMTVIDEHL--IPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAA 162 (202)
Q Consensus 85 i~~y~~ki~~EL~~iC~eii~lid~~L--ip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 162 (202)
+.....++-.+.-. ..+.+.++...+ .+...+....+-++-..|..|.-+ ++ .++|...|++|..++
T Consensus 137 ~~~~la~~~~~~g~-~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQ-YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKL-----RN-----LAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHTC-HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHh-----Cc-----HHHHHHHHHHHHHHh
Confidence 11111111111111 112222322221 122222334454444555444221 11 356899999999988
Q ss_pred hccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 163 EADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 163 ~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.. .+ ..|.-.|...+.+.-+|...++.++|+....+|
T Consensus 206 ~~-~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 206 NS-IY-CPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HH-SC-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred hc-CC-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 64 43 334445777777777888889999998776554
No 16
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=88.16 E-value=9.9 Score=31.33 Aligned_cols=185 Identities=13% Similarity=0.038 Sum_probs=95.0
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCH---HHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHH-
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTV---EERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAK- 83 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~---eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~- 83 (202)
..+..++....+.|+|++.+.+.+++++.++.-.. .=...+..+|-. .+....+...+....+..+..++.....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 45667888999999999999999999987655221 122334444432 3444555555432221111111111110
Q ss_pred ----HHHHH-HHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhh-------cccchHHHHHHHH
Q 028895 84 ----RIKEY-RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEF-------KFGDEKKEAAANS 151 (202)
Q Consensus 84 ----~i~~y-~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~-------~~~~~~~~~~~~a 151 (202)
+-.-| ...--++-...+...+++.... .+.......+...|..|...-+. ...++-....+.|
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A 202 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQL-----GDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA 202 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence 00000 1111133344445555544331 12223344444555555443320 0011223346788
Q ss_pred HHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 152 MKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 152 ~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
...|++|++++.. + .+|...+.+++.-...|.-.|+.++|....+.|
T Consensus 203 ~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 249 (411)
T 4a1s_A 203 VEFYQENLKLMRD-L--GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER 249 (411)
T ss_dssp HHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-c--CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999998864 2 233334444444455566689999998887765
No 17
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=87.54 E-value=1.2 Score=39.96 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++.+..|.|.||-.+...-|.+.-|. -+|+.++|..+.+.+
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~-~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL-YMQDWEGALKYGQKI 366 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH-hhcCHHHHHHHHHHH
Confidence 4678899999999988999999998888888776665 489999999988765
No 18
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=87.34 E-value=4.6 Score=30.90 Aligned_cols=88 Identities=13% Similarity=0.126 Sum_probs=56.3
Q ss_pred HHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028895 100 CNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALN 179 (202)
Q Consensus 100 C~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN 179 (202)
+.+.+++..+.+-+. +...+-.+...|..|...-+ .+.|...|++|++++...+.+.+|.......|
T Consensus 24 ~~~al~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 24 CKQALEDLEKTSGHD---HPDVATMLNILALVYRDQNK----------YKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp HHHHHHHHHHHHCSS---SHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHHHccc----------HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 334445554433222 22334445556665543322 35689999999999987777788877666666
Q ss_pred HHHHHHHHhCChHHHHHhhhhh
Q 028895 180 FSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 180 ~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.. |.-.|+.++|......|
T Consensus 91 l~~~-~~~~g~~~~A~~~~~~a 111 (283)
T 3edt_B 91 LAVL-YGKRGKYKEAEPLCKRA 111 (283)
T ss_dssp HHHH-HHTTTCHHHHHHHHHHH
T ss_pred HHHH-HHHhccHHHHHHHHHHH
Confidence 6654 55789999998887654
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=87.13 E-value=13 Score=31.42 Aligned_cols=48 Identities=10% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|.+.|++|+++ .|.++..-.+.+++..+.+.-+++.++|+...+.|
T Consensus 351 ~~A~~~~~kaL~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 351 EEAEYYFQKEFSK-----ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHHHHHHHHHHHS-----CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5688999999753 34555555667788888888889999998776554
No 20
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=86.83 E-value=2.3 Score=31.98 Aligned_cols=86 Identities=21% Similarity=0.115 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHh---hcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh--HHhhH--hhhCchHHHHHHHHHHHHHH
Q 028895 21 ERYDEMVDAMKNVA---KLDVELTVEERNLLSVGYKNVIGARRASWRILSS--IEQKE--EAKGNEVNAKRIKEYRQKVE 93 (202)
Q Consensus 21 eRy~dm~~~mk~~i---~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~--~eq~~--~~~~~~~~~~~i~~y~~ki~ 93 (202)
+|.|.-++.+|.-+ -.|.+||.|-|.=|.--.|...-.-|-|.|-+.. ..+-. +..+ .+-++-....+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~Kdk-----eISEDe~kr~e 85 (121)
T 3lf9_A 11 ERMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDK-----EVNWFDISQAL 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCT-----TSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcC-----CCCHHHHHhHH
Confidence 56777788887665 3489999999999999889888888888888752 11110 0011 11234445566
Q ss_pred HHHHHhHHHHHHHHhhcc
Q 028895 94 SELSDICNDIMTVIDEHL 111 (202)
Q Consensus 94 ~EL~~iC~eii~lid~~L 111 (202)
++|..+.+..+.-||..|
T Consensus 86 ~eIQKLTDkyIkkID~ll 103 (121)
T 3lf9_A 86 WEIQKLTDVAVKKIDEVL 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 677777777666666654
No 21
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=86.70 E-value=4.7 Score=35.97 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=63.8
Q ss_pred HHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchH
Q 028895 94 SELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIR 173 (202)
Q Consensus 94 ~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~Pir 173 (202)
+|...+|...+++-.+.|=|...+ ..=-+.-.|.-|+.+ | --+.|...|++|+++-+..++|.||--
T Consensus 315 ~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~-----g-----~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 381 (433)
T 3qww_A 315 SELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYM-----Q-----DWEGALKYGQKIIKPYSKHYPVYSLNV 381 (433)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhh-----c-----CHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 455667777777776666554321 111122222222211 1 134689999999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 174 LGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 174 LgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.....|.++- |--.|+.++|..+.+.|
T Consensus 382 a~~l~nLa~~-~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 382 ASMWLKLGRL-YMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhccCHHHHHHHHHHH
Confidence 8888888776 45688999999888766
No 22
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=86.22 E-value=5.4 Score=33.25 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=45.7
Q ss_pred hHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhh
Q 028895 119 ESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYY 198 (202)
Q Consensus 119 eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~ 198 (202)
.-..+|+-.+|.++...-. -+.|...|++|..++.. ++ +|...+-+++.--..|-.+|++++|+...
T Consensus 98 ~l~~~~~~~~g~~~~~~g~----------~~~A~~~~~~al~~~~~-~~--~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 98 LLKYYSLFFRGMYEFDQKE----------YVEAIGYYREAEKELPF-VS--DDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHTTGGG-CC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC----------HHHHHHHHHHHHHHHhh-CC--ChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3455677788887654322 35689999999998863 33 33444444444444555689999998877
Q ss_pred hhh
Q 028895 199 MHC 201 (202)
Q Consensus 199 ~~~ 201 (202)
..|
T Consensus 165 ~~a 167 (378)
T 3q15_A 165 LQA 167 (378)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 23
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=86.22 E-value=9.8 Score=29.24 Aligned_cols=51 Identities=14% Similarity=0.084 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 150 NSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 150 ~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.|...|++|.++....-.+. +-.+.-++..--..|...|+.++|....+.|
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 247 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKY-KDELIEANEYIAYYYTINRDKVKADAAWKNI 247 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGG-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccc-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 37889999999886433322 3334334444445566789999999887765
No 24
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=84.64 E-value=1.9 Score=39.12 Aligned_cols=52 Identities=15% Similarity=0.022 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++.+..|.|.||-.+...-|.+..|.. +|+.++|..+.+.+
T Consensus 326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~a 377 (490)
T 3n71_A 326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRM 377 (490)
T ss_dssp HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 35677899999999889999999999988888776654 79999999888765
No 25
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=84.40 E-value=13 Score=28.92 Aligned_cols=50 Identities=16% Similarity=0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|++++... .+|...+.+++.-...|.-.|++++|....+.+
T Consensus 200 ~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEF---GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46788888888887641 244455555555556667788888888777654
No 26
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=84.39 E-value=13 Score=29.11 Aligned_cols=45 Identities=16% Similarity=0.201 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++. |.+|. ...+.+ ..|.-+|+.++|....+.|
T Consensus 252 ~~~A~~~~~~a~~~~-----~~~~~---~~~~la-~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 252 YAEALDYHRQALVLI-----PQNAS---TYSAIG-YIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHHHHHS-----TTCSH---HHHHHH-HHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhC-----ccchH---HHHHHH-HHHHHhccHHHHHHHHHHH
Confidence 356888888888753 34432 223333 3456689999999888765
No 27
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=83.07 E-value=1.5 Score=39.11 Aligned_cols=52 Identities=10% Similarity=0.032 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++.+..|+|.||..+...-|.+.-|.. +|+.++|..+.+.+
T Consensus 304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~ 355 (429)
T 3qwp_A 304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRT 355 (429)
T ss_dssp HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHH
Confidence 45667788888777778999999999988888776654 79999999988764
No 28
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=81.81 E-value=16 Score=28.06 Aligned_cols=33 Identities=9% Similarity=0.152 Sum_probs=28.1
Q ss_pred hHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 7 re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
-+.++.+|.+.-+.|+|++.+...+++++.+|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 35 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN 35 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 356788999999999999999999999987765
No 29
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=81.26 E-value=11 Score=25.81 Aligned_cols=145 Identities=12% Similarity=0.047 Sum_probs=76.6
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEY 88 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y 88 (202)
-+..++.+....|+|++.+.+.++.++..+..... .....++ ..+..+-.. .|+ ....+.
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~-----------~~l~~~~~~---~g~--~~~A~~-- 70 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK--AAERIAY-----------SNLGNAYIF---LGE--FETASE-- 70 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH--HHHHHHH-----------HHHHHHHHH---TTC--HHHHHH--
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc--hHHHHHH-----------HHHHHHHHH---cCC--HHHHHH--
Confidence 35678888889999999999999988653221111 1111122 222111111 121 111222
Q ss_pred HHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCC
Q 028895 89 RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPP 168 (202)
Q Consensus 89 ~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~p 168 (202)
.+...+++.... .++......+-..|..|... |+ -+.|...|++|++++.. .+
T Consensus 71 ----------~~~~a~~~~~~~-----~~~~~~~~~~~~l~~~~~~~-----~~-----~~~A~~~~~~a~~~~~~-~~- 123 (164)
T 3ro3_A 71 ----------YYKKTLLLARQL-----KDRAVEAQSCYSLGNTYTLL-----QD-----YEKAIDYHLKHLAIAQE-LK- 123 (164)
T ss_dssp ----------HHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHT-----TC-----HHHHHHHHHHHHHHHHH-TT-
T ss_pred ----------HHHHHHHHHHHh-----CCcHHHHHHHHHHHHHHHHH-----hh-----HHHHHHHHHHHHHHHHH-cc-
Confidence 223333333221 22233333444445544332 11 34688999999999864 22
Q ss_pred CCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 169 THPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 169 t~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+|...+.++..--..|.-.|+.++|....+.|
T Consensus 124 -~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 124 -DRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -chHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34444444444445667789999999887765
No 30
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=81.24 E-value=19 Score=28.74 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=48.7
Q ss_pred HHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhh
Q 028895 121 TVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMH 200 (202)
Q Consensus 121 kvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~ 200 (202)
.+-.+...|..|..+-+ -+.|...|++|+++++ .++..+|....+..|.+..|++ +|+.++|+...+.
T Consensus 154 ~~~~~~~lg~~y~~~g~----------~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~nlg~~y~~-~~~y~~A~~~~~~ 221 (293)
T 3u3w_A 154 NLYIENAIANIYAENGY----------LKKGIDLFEQILKQLE-ALHDNEEFDVKVRYNHAKALYL-DSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHH-hcccchhHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Confidence 34445555666643321 3568999999999986 4666667777788888877664 7899999988766
Q ss_pred h
Q 028895 201 C 201 (202)
Q Consensus 201 ~ 201 (202)
|
T Consensus 222 a 222 (293)
T 3u3w_A 222 A 222 (293)
T ss_dssp H
T ss_pred H
Confidence 5
No 31
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=81.19 E-value=27 Score=30.35 Aligned_cols=45 Identities=7% Similarity=0.005 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|.+.|++|+++ .|.+|.- ..+. ...|...|+.++|....+.+
T Consensus 532 ~~~A~~~~~~~~~~-----~p~~~~~---~~~l-~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 532 YDAAIDALNQGLLL-----STNDANV---HTAI-ALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHHHHHHHHH-----SSCCHHH---HHHH-HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCChHH---HHHH-HHHHHHhCCHHHHHHHHHHH
Confidence 45678888888765 3556522 2222 23466799999999887765
No 32
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=81.01 E-value=20 Score=28.78 Aligned_cols=57 Identities=18% Similarity=0.271 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+..++.+....|+|++.+.+.+++++.+|. +.+-...+..+|-. .+....|...+.
T Consensus 100 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~ 156 (368)
T 1fch_A 100 AWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN-ESLQRQACEILR 156 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 3456677777778888888888877776654 33344444444433 334444444443
No 33
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=78.84 E-value=21 Score=27.65 Aligned_cols=184 Identities=10% Similarity=0.013 Sum_probs=97.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHH----HHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVE----ERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAK 83 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~e----ERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~ 83 (202)
..+...|....+.|+|++.+.+.+++++.++. +.+ =...+..+|-. .+....+...+....+.....++.....
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 46778899999999999999999999987655 222 12233344332 3334444444432211111111111111
Q ss_pred -----HHHHH-HHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhc----------ccchHHHH
Q 028895 84 -----RIKEY-RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFK----------FGDEKKEA 147 (202)
Q Consensus 84 -----~i~~y-~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~----------~~~~~~~~ 147 (202)
+..-| ...--++-...+...+++... ..++......+...|..|...-+.. ..++-...
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 158 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRE-----LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA 158 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-----hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence 00001 111122333444444544433 2333444555556666665554310 01222334
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|++++.. .+ ++...+.+++.-...|.-.|+.++|....+.|
T Consensus 159 ~~~A~~~~~~a~~~~~~-~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 159 LQAAVDLYEENLSLVTA-LG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp HHHHHHHHHHHHHHHHH-HT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-cC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 67788889999888864 22 33444445555555666789999999887765
No 34
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=78.74 E-value=11 Score=30.16 Aligned_cols=87 Identities=8% Similarity=-0.072 Sum_probs=49.6
Q ss_pred HHHHHHhhccCCCCCCChHH--HHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHH
Q 028895 102 DIMTVIDEHLIPSASAGEST--VFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALN 179 (202)
Q Consensus 102 eii~lid~~Lip~~~~~esk--vFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN 179 (202)
+.+.+++..+-.....++.+ +.|+...|.+|... ++ .+.|...|++|+++.. +..++.....++|
T Consensus 93 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~-----~~~Ai~~~~~al~~~~---~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 93 EIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-----VD-----YEYCILELKKLLNQQL---TGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS-----SC-----HHHHHHHHHHHHHTCC---CCSCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc-----cC-----HHHHHHHHHHHHHHhc---ccccHHHHHHHHH
Confidence 34444444443222333333 45666667766322 11 3468999999998543 2334444444444
Q ss_pred HHHHHHHHhCChHHHHHhhhhh
Q 028895 180 FSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 180 ~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.--..|.-+|+.++|....+.|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~a 181 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQI 181 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4445556689999999887665
No 35
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=78.11 E-value=5.3 Score=28.24 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-+.|.+.|++|+++ .|.+|. ...|.+..|+. +|+.++|+...+.|
T Consensus 24 ~~~A~~~y~~Al~~-----~p~~~~---~~~nlg~~~~~-~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 24 FEKAHVHYDKAIEL-----DPSNIT---FYNNKAAVYFE-EKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCHH---HHHhHHHHHHH-hhhHHHHHHHHHHH
Confidence 35689999999875 466654 34566665554 79999998877654
No 36
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=78.09 E-value=26 Score=28.33 Aligned_cols=185 Identities=11% Similarity=0.010 Sum_probs=91.7
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCH---HHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHH-
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTV---EERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAK- 83 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~---eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~- 83 (202)
..+...+...-+.|+|++.+.+.+++++.++.-.. .-...+..+|-. .+....+...+..........++.....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 45677889999999999999999999987655221 222344444432 3444444444432111111111111110
Q ss_pred ----HHHHH-HHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchh-------hccc---chHHHHH
Q 028895 84 ----RIKEY-RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAE-------FKFG---DEKKEAA 148 (202)
Q Consensus 84 ----~i~~y-~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE-------~~~~---~~~~~~~ 148 (202)
+..-| ...--++-...+...+++.... .++......+-..|..|...-. ...+ ++-....
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISREL-----NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-----ccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 00001 0011123344444555544332 1222223333333333332222 1111 2233446
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|++++.. . +.+| ..+.+++.-...|--+|+.++|....+.|
T Consensus 164 ~~A~~~~~~al~~~~~-~-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTA-L-GDRA-AQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHHHHHHHH-T-TCHH-HHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-c-cCcH-HHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 7888889999988864 3 2334 34444444455566689999998877665
No 37
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=77.63 E-value=28 Score=28.52 Aligned_cols=173 Identities=10% Similarity=0.028 Sum_probs=84.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC-----CHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHH--
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL-----TVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNA-- 82 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L-----~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~-- 82 (202)
+..++.+....|+|++.+.+.+++++....+ ...=...+..+|- ..+....|...+..........++....
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK-VMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 4577888888999999999999887542111 1122233333332 2344444444443221111111111111
Q ss_pred ---HHHHHHHHH-H-----------------HHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhccc
Q 028895 83 ---KRIKEYRQK-V-----------------ESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFG 141 (202)
Q Consensus 83 ---~~i~~y~~k-i-----------------~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~ 141 (202)
.+-.-|... - -++-...+.+.+++.... .++......+-..|..|...-.
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~---- 238 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL-----GDRGAQGRACGNLGNTYYLLGD---- 238 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcCC----
Confidence 111111111 1 233344455555544332 1223344445555555543321
Q ss_pred chHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 142 DEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 142 ~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++... . .++...+.+++.-...|--.|+.++|....+.|
T Consensus 239 ------~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (411)
T 4a1s_A 239 ------FQAAIEHHQERLRIARE-F--GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT 289 (411)
T ss_dssp ------HHHHHHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHHHHHh-c--CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 34578888888887764 1 233344445444455566778888887776654
No 38
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=77.45 E-value=21 Score=26.93 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=42.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
+.+..++.+.-+.|+|++.+.+..++++.+++-+..-...+..+|-. .+....|...+.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~ 66 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEAADYFD 66 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHHHHHHH
Confidence 56788899999999999999999999988774444444445555543 455555655554
No 39
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=75.11 E-value=28 Score=27.34 Aligned_cols=45 Identities=9% Similarity=0.085 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++ .|.+|. ...+.+. .|..+|+.++|....+.|
T Consensus 288 ~~~A~~~~~~~~~~-----~~~~~~---~~~~~~~-~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 288 PVEAIRICSEVLQM-----EPDNVN---ALKDRAE-AYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHH---HHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CcccHH---HHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 35678888888765 455542 3344444 456689999999887765
No 40
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=74.57 E-value=39 Score=28.67 Aligned_cols=45 Identities=9% Similarity=0.107 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++ .|.+| ....+.+ ..|.-+|+.++|....+.|
T Consensus 444 ~~~A~~~~~~a~~~-----~p~~~---~~~~~l~-~~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 444 FNAAIKLLTKACEL-----DPRSE---QAKIGLA-QLKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCCH---HHHHHHH-HHHHHhccHHHHHHHHHHH
Confidence 45678888888764 45555 2233443 3456789999999887765
No 41
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=74.34 E-value=36 Score=28.17 Aligned_cols=45 Identities=9% Similarity=0.119 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++ .|.+| ....+.+. .|...|+.++|....+.|
T Consensus 311 ~~~A~~~~~~a~~~-----~p~~~---~~~~~l~~-~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 311 PVEAIRVCSEVLQM-----EPDNV---NALKDRAE-AYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHHHHHH-----CTTCH---HHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CcccH---HHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 34577778877764 45554 22233333 345789999999887765
No 42
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=73.90 E-value=6 Score=32.42 Aligned_cols=73 Identities=15% Similarity=0.095 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|-|.|-+..--... -+.-.+.-.+-++-..+.++++..+.++.+.-||..+
T Consensus 127 P~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~-lKk~~K~~~isEDe~k~~e~eiQklTd~~i~~iD~~l 199 (209)
T 4gfq_A 127 PALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDD-LKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIA 199 (209)
T ss_dssp CBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999988899988885211110 0000000012234555677778888888887777654
No 43
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=72.20 E-value=32 Score=26.60 Aligned_cols=64 Identities=13% Similarity=0.032 Sum_probs=45.5
Q ss_pred hHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC--HHHHHHHHhhhhhhhchhhhHHHHHHhHHh
Q 028895 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT--VEERNLLSVGYKNVIGARRASWRILSSIEQ 71 (202)
Q Consensus 7 re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~--~eERnLlsvayKn~i~~~R~s~R~l~~~eq 71 (202)
-+.+..+|...-+.|+|++.+...++++...|.-. .+=...+..+|-. .+....|...+....+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~ 80 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQ 80 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHH
Confidence 46778889999999999999999999998765432 4555556666543 4566667666654433
No 44
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=72.16 E-value=49 Score=28.80 Aligned_cols=170 Identities=16% Similarity=0.123 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhCCH-HHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHH
Q 028895 9 NFVYVAKLAEQAERY-DEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKE 87 (202)
Q Consensus 9 ~li~~AklaeqaeRy-~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~ 87 (202)
-+..++++....|+| ++.+.+.+++++.+|.. .+-...|..+|-. .+....|...+....+.... ......+-.-
T Consensus 104 ~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~--~~~~~~lg~~ 179 (474)
T 4abn_A 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPEL-VEAWNQLGEVYWK-KGDVTSAHTCFSGALTHCKN--KVSLQNLSMV 179 (474)
T ss_dssp HHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCCC--HHHHHHHHHH
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC--HHHHHHHHHH
Confidence 355667777777777 77777777777766543 3444555555433 23344444443221111100 0001111111
Q ss_pred HHH----------HHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHH
Q 028895 88 YRQ----------KVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYET 157 (202)
Q Consensus 88 y~~----------ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~ 157 (202)
|.. .=-++-...++..+++ -|.. . ..+-..|..|..+. +..+. ...-.+.|..+|++
T Consensus 180 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~----~--~~~~~lg~~~~~~~-~~~~~-~~g~~~~A~~~~~~ 246 (474)
T 4abn_A 180 LRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLD----G--RSWYILGNAYLSLY-FNTGQ-NPKISQQALSAYAQ 246 (474)
T ss_dssp HTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTC----H--HHHHHHHHHHHHHH-HHTTC-CHHHHHHHHHHHHH
T ss_pred HHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCC----H--HHHHHHHHHHHHHH-Hhhcc-ccchHHHHHHHHHH
Confidence 110 1112333334444432 1321 1 22333444443321 11222 11235678999999
Q ss_pred HHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 158 ATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 158 A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
|+++ .|.+|-......|.+..|+ -+|+.++|....+.|
T Consensus 247 al~~-----~p~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 247 AEKV-----DRKASSNPDLHLNRATLHK-YEESYGEALEGFSQA 284 (474)
T ss_dssp HHHH-----CGGGGGCHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHh-----CCCcccCHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence 9876 3322244455566665554 479999998887665
No 45
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=71.56 E-value=41 Score=27.63 Aligned_cols=171 Identities=7% Similarity=-0.054 Sum_probs=84.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcCCCCCH-----HHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCc-hHHHHHH
Q 028895 12 YVAKLAEQAERYDEMVDAMKNVAKLDVELTV-----EERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGN-EVNAKRI 85 (202)
Q Consensus 12 ~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~-----eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~-~~~~~~i 85 (202)
+++.+....|+|++.+.+.++++..-..+.. +=...+..+|-. .+..-.|...+.....--...++ ......+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 3788888999999999999999865322222 223344444433 33333444433211111111111 1111000
Q ss_pred HHHHH------HHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHH
Q 028895 86 KEYRQ------KVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETAT 159 (202)
Q Consensus 86 ~~y~~------ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~ 159 (202)
-...- .--++-....+..+++..+ ..++......+.-.|..|..+- --+.|...|++|+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~~~~~~~~~lg~~y~~~g----------~~~~A~~~~~~al 251 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEA-----EKQPQLMGRTLYNIGLCKNSQS----------QYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHHHHHCC----------CHHHHHHHHHHHH
Confidence 00000 0112223334444444432 1223333334444566554331 1456899999999
Q ss_pred HHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 160 TAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 160 ~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
++++..-. .|.......|.+. .|--+|+.++|....+.|
T Consensus 252 ~~~~~~~~--~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 252 AVFEESNI--LPSLPQAYFLITQ-IHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHTTC--GGGHHHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhcc--chhHHHHHHHHHH-HHHHCCCHHHHHHHHHHH
Confidence 99875332 1333333344444 455689999998887665
No 46
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=71.40 E-value=44 Score=27.96 Aligned_cols=53 Identities=9% Similarity=-0.017 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhccC--CCCC----chHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADL--PPTH----PIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L--~pt~----PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|.+.-...+ .|.+ |-......+.+. .|--.|+.++|+.....+
T Consensus 205 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~ 263 (514)
T 2gw1_A 205 YDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI-FKFLKNDPLGAHEDIKKA 263 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH-HHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH-HHHHCCCHHHHHHHHHHH
Confidence 4567888888887433223 4444 444444444444 455679999999887654
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=71.25 E-value=35 Score=26.75 Aligned_cols=56 Identities=18% Similarity=0.124 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 11 i~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
..+|.+..+.|+|++.+..++++++.+|. +.+-...+..+|-. .+....+...+..
T Consensus 124 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~A~~~~~~ 179 (359)
T 3ieg_A 124 RSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIK-EGEPRKAISDLKA 179 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 44588999999999999999999987664 34445555555543 3555556666543
No 48
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=70.70 E-value=22 Score=24.12 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=42.7
Q ss_pred HHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhh
Q 028895 120 STVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYM 199 (202)
Q Consensus 120 skvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~ 199 (202)
..+..+-..|..|...-+ .+.|...|++|++++.. . .+|...+.+++.--..|...++.++|....+
T Consensus 47 ~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~a~~~~~~-~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 113 (164)
T 3ro3_A 47 AERIAYSNLGNAYIFLGE----------FETASEYYKKTLLLARQ-L--KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHL 113 (164)
T ss_dssp HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHH-h--CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334444555665544322 35689999999999864 2 2344444444444445556899999998877
Q ss_pred hh
Q 028895 200 HC 201 (202)
Q Consensus 200 ~~ 201 (202)
.|
T Consensus 114 ~a 115 (164)
T 3ro3_A 114 KH 115 (164)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 49
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=69.68 E-value=42 Score=26.99 Aligned_cols=173 Identities=12% Similarity=0.056 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC-----HHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHH-
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELT-----VEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAK- 83 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~-----~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~- 83 (202)
+..++.+..+.|+|++.+.+.++++....... ..-...+..+|. ..+....|...+..........++.....
T Consensus 50 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 50 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK-VLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 45778888899999999999988875422111 112223333332 23444555555432222111111111110
Q ss_pred ----HHHHHHHH-H--------------------HHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhh
Q 028895 84 ----RIKEYRQK-V--------------------ESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEF 138 (202)
Q Consensus 84 ----~i~~y~~k-i--------------------~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~ 138 (202)
+-.-|... - -++-...+...+.+.... .+.....-.+...|..|...-.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~- 202 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL-----GDRAAQGRAFGNLGNTHYLLGN- 202 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHHTB-
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc-----cCcHHHHHHHHHHHHHHHHccC-
Confidence 10111110 0 233344455555554432 1222333344444555443321
Q ss_pred cccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 139 KFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 139 ~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|++++.. . .+|..++.+++.-...|..+|+.++|....+.|
T Consensus 203 ---------~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 203 ---------FRDAVIAHEQRLLIAKE-F--GDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp ---------HHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHh-c--CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 34678888888888764 2 223334444444444556688888888777654
No 50
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=68.70 E-value=9.8 Score=30.49 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|.+.|.+..--... -+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1dd5_A 103 PSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKK-IKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVF 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888889988884211110 0000000012245555677777777777777777654
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=68.41 E-value=39 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.001 Sum_probs=36.3
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
+.++.+|...-+.|+|++.+.+.++++..+|. +.+-...+..+|-. .+....|...+.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~A~~~~~ 79 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAE-NEKDGLAIIALN 79 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 45677888888888888888888888876655 33444444444433 244444444443
No 52
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=68.23 E-value=43 Score=26.56 Aligned_cols=172 Identities=12% Similarity=-0.013 Sum_probs=85.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHH------hhhhhhhchhhhHHHHHHh-HHhhHhhhCchH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLS------VGYKNVIGARRASWRILSS-IEQKEEAKGNEV 80 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLls------vayKn~i~~~R~s~R~l~~-~eq~~~~~~~~~ 80 (202)
+.+...+...-..|+|+++++..++.++..+.. .+....+. ..| ...+..-.|...+.. ++..... .+..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~-~~~~ 152 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH-PEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTG-IDVY 152 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC-HHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHTTCCCS-SCTT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC-hhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcC-CchH
Confidence 345566777778899999999999988766553 33222111 111 112233344444321 1111110 1111
Q ss_pred H-H----HHHHHHH-HHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHH
Q 028895 81 N-A----KRIKEYR-QKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKA 154 (202)
Q Consensus 81 ~-~----~~i~~y~-~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~a 154 (202)
. . .+-.-|. ..=-++-....+..+++.+. .|. ++...+..+-..|..|..+- --+.|...
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~--~~~--~~~~~~~~~~nlg~~y~~~~----------~y~~Al~~ 218 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEA--LHD--NEEFDVKVRYNHAKALYLDS----------RYEESLYQ 218 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--SCC--CHHHHHHHHHHHHHHHHHTT----------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--cCc--cccchHHHHHhHHHHHHHHh----------hHHHHHHH
Confidence 0 1 0001111 11122344455555655543 232 11112123334455443221 13568999
Q ss_pred HHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHH-HHhhh
Q 028895 155 YETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERF-VRYYM 199 (202)
Q Consensus 155 Y~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A-~~i~~ 199 (202)
|++|++++.. ..++..++.+++.--..|.-+|+.++| ....+
T Consensus 219 ~~kal~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~ 261 (293)
T 2qfc_A 219 VNKAIEISCR---INSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHH---TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 9999999853 234455666666666677889999999 44333
No 53
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=67.32 E-value=39 Score=25.68 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
+-+..++.+..+.|+|++.+..+.++++.+|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 37 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQ 37 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34455666666666666666666666665544
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=67.31 E-value=22 Score=37.28 Aligned_cols=23 Identities=13% Similarity=0.115 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCChHHHHHhhhhh
Q 028895 179 NFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 179 N~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.--|-+|+-.|..++|+.+...|
T Consensus 1284 eeli~yYe~~G~feEAI~LlE~a 1306 (1630)
T 1xi4_A 1284 EELINYYQDRGYFEELITMLEAA 1306 (1630)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH
Confidence 35577899999999999998776
No 55
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=67.08 E-value=10 Score=30.36 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|.+.|.+..--... -+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1ise_A 103 PPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDK-VKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAAL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888888988884211110 0000000012244555677777777777777777654
No 56
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=66.57 E-value=88 Score=29.50 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=39.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 66 (202)
+-+..++.+..+.|+|++.+.+.+++++.+|+.. +=.+-|..+|.. .+..-.|...+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~-~a~~nLg~~l~~-~g~~~eA~~~~ 66 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFA-AAHSNLASVLQQ-QGKLQEALMHY 66 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-HHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH-cCCHHHHHHHH
Confidence 4566789999999999999999999999887753 344445555543 23333343333
No 57
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=66.22 E-value=11 Score=30.22 Aligned_cols=73 Identities=19% Similarity=0.158 Sum_probs=46.8
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|.+.|.+..--... -+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1is1_A 103 PPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANND-LKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVL 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888888988884211100 0000000012244555677777777777777777654
No 58
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=65.94 E-value=18 Score=23.77 Aligned_cols=51 Identities=8% Similarity=-0.035 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++... .++.+|.......+.+..+ .-+|+.++|....+.+
T Consensus 55 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~-~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 55 NKCRELCEKAIEVGRE-NREDYRQIAKAYARIGNSY-FKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccc-cchhHHHHHHHHHHHHHHH-HHhccHHHHHHHHHHH
Confidence 5688899999988753 4455554455556665554 4589999998877654
No 59
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=65.86 E-value=10 Score=30.36 Aligned_cols=73 Identities=16% Similarity=0.169 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|.+.|.+..--... -+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 104 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 176 (185)
T 1eh1_A 104 PPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDK-LKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLA 176 (185)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999888888988885211110 0000000112245556777888888888888777654
No 60
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=65.63 E-value=8.6 Score=27.70 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHhcc---CCCC-------CchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEAD---LPPT-------HPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~---L~pt-------~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-+.|...|++|+++.... -.|+ +|....+.+|.+..|+ -+|+.++|+..+..|
T Consensus 27 ~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 27 YKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 356899999999986531 1233 6777788888877654 578999999887765
No 61
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=65.50 E-value=57 Score=26.92 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=85.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCch-HHHHHHHHH
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNE-VNAKRIKEY 88 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~-~~~~~i~~y 88 (202)
...+|.+..+.|+|++.+....++++.+|. +..-...+..+|-. .+....|...+....+... .+. ....+..-|
T Consensus 146 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~ 221 (450)
T 2y4t_A 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIK-EGEPRKAISDLKAASKLKN--DNTEAFYKISTLY 221 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHC--SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence 345577788999999999999999987654 34445555555543 3555566666543322211 111 111111111
Q ss_pred HHH-HHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHh--------hccccccchhhcccchHHHHHHHHHHHHHHHH
Q 028895 89 RQK-VESELSDICNDIMTVIDEHLIPSASAGESTVFFYKM--------KGDYYRYLAEFKFGDEKKEAAANSMKAYETAT 159 (202)
Q Consensus 89 ~~k-i~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~Km--------kGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~ 159 (202)
... --++-......++. +-|. ++.....+..+ .|+.+.- ..-.+.|...|++|+
T Consensus 222 ~~~g~~~~A~~~~~~~~~-----~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~----------~g~~~~A~~~~~~~l 284 (450)
T 2y4t_A 222 YQLGDHELSLSEVRECLK-----LDQD--HKRCFAHYKQVKKLNKLIESAEELIR----------DGRYTDATSKYESVM 284 (450)
T ss_dssp HHTTCHHHHHHHHHHHHH-----HCTT--CHHHHHHHHHHHHHHHHHHHHHHHHH----------HTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH-----hCCC--hHHHHHHHHHHHHHHHHHHHHHHHHH----------cCCHHHHHHHHHHHH
Confidence 110 01122222222222 1222 11111111011 1222211 112456788888887
Q ss_pred HHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 160 TAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 160 ~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+ +.|.+|....-+++.-.-.|.-+|+.++|+...+.|
T Consensus 285 ~-----~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 321 (450)
T 2y4t_A 285 K-----TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321 (450)
T ss_dssp H-----HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred h-----cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6 346787665555555566677889999999887765
No 62
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=65.02 E-value=12 Score=30.00 Aligned_cols=73 Identities=21% Similarity=0.154 Sum_probs=46.1
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|.+.|.+..--... -+...+.-.+-++-..+.++++..+.+..+.-||..+
T Consensus 103 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~-lKk~~K~~~iseD~~k~~e~~iQkltd~~i~~id~~~ 175 (185)
T 1wqg_A 103 PQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEE-LHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELV 175 (185)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999998888888888884211100 0000000011244555667777777777777777654
No 63
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=64.86 E-value=47 Score=25.77 Aligned_cols=53 Identities=11% Similarity=-0.068 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHhccCCCCC-chHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTH-PIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~-PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++....-.+.+ |-......|.+. .|.-+|+.++|....+.+
T Consensus 209 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~a 262 (330)
T 3hym_B 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH-VCRKLKKYAEALDYHRQA 262 (330)
T ss_dssp HHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 35689999999998754333222 222223344444 356789999999887654
No 64
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=64.77 E-value=52 Score=26.22 Aligned_cols=58 Identities=10% Similarity=-0.052 Sum_probs=39.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
+.+..++.+..+.|+|++.+.+.+++++.+|.- .+-...+..+|.. .+....|...+.
T Consensus 65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~ 122 (368)
T 1fch_A 65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH-MEAWQYLGTTQAE-NEQELLAISALR 122 (368)
T ss_dssp SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-CcCHHHHHHHHH
Confidence 457889999999999999999999999876653 4444555555543 234444444443
No 65
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=64.60 E-value=22 Score=28.39 Aligned_cols=70 Identities=14% Similarity=0.139 Sum_probs=48.9
Q ss_pred CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcc
Q 028895 38 VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESELSDICNDIMTVIDEHL 111 (202)
Q Consensus 38 ~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~lid~~L 111 (202)
|+||.|-|.=|....|...-.-|.|.|.+..--...-.+. . . +-++-..+.++++..+.+..+.-||..+
T Consensus 105 P~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~-~-k--iseD~~k~~e~~iQkltd~~i~~id~~~ 174 (184)
T 1ge9_A 105 PPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEEL-E-G--ISEDEKKRALERLQKLTDKYIDEINKLM 174 (184)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-T-T--CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-C--CChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999888999998852111111111 1 1 2355566778888888888888887654
No 66
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=63.74 E-value=13 Score=31.38 Aligned_cols=51 Identities=14% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHhcc-CCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhh
Q 028895 149 ANSMKAYETATTAAEAD-LPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMH 200 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~-L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~ 200 (202)
+.|.+.|++|+++.+.. ....||-.+...-|.+.-|+ -+|+.++|....+.
T Consensus 68 ~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~k 119 (472)
T 4g1t_A 68 EAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDK 119 (472)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHH
Confidence 56899999999998643 34457766666667776555 57999988776544
No 67
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=63.47 E-value=73 Score=27.48 Aligned_cols=52 Identities=4% Similarity=-0.012 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|.+.|++|.++... . +.+|-....+++.-.-.|-..|+.++|....+.+
T Consensus 491 ~~~A~~~~~~~~~~~~~-~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 542 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKK-T-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG 542 (597)
T ss_dssp HHHHHHHHHHHHHHHHH-S-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhc-c-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45789999999987653 2 3456544444444455667799999999988764
No 68
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=63.13 E-value=69 Score=27.07 Aligned_cols=52 Identities=10% Similarity=0.001 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhc--cCCCCCch---HHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 150 NSMKAYETATTAAEA--DLPPTHPI---RLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 150 ~a~~aY~~A~~~a~~--~L~pt~Pi---rLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+...|.+|....+. ...|.+|- .++.++..--..|.-.|+.++|....+.+
T Consensus 213 ~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 213 VANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp HHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344455555555442 45666653 35666666667788899999999887764
No 69
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=62.43 E-value=45 Score=24.68 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=37.3
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
.-+..+|.+..+.|+|++.+.++++++..++.. ..-...+..+|-. .+....|...+.
T Consensus 58 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~ 115 (243)
T 2q7f_A 58 IPYINFANLLSSVNELERALAFYDKALELDSSA-ATAYYGAGNVYVV-KEMYKEAKDMFE 115 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc-hHHHHHHHHHHHH-hccHHHHHHHHH
Confidence 345677888888999999999999988776543 3334444444432 344455555554
No 70
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=59.65 E-value=23 Score=24.81 Aligned_cols=44 Identities=20% Similarity=0.281 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|.+.|++|+++ .|.+|. +..|.+..+ .-+|+.++|+.....|
T Consensus 30 ~~A~~~~~~al~~-----~p~~~~---~~~~~~~~~-~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 30 PTAMRHYNEAVKR-----DPENAI---LYSNRAACL-TKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHH-----CTTCHH---HHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCCHH---HHHHHhhHH-HhhccHHHHHHHHHHH
Confidence 4577778877754 345542 333444433 3467777777766554
No 71
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=59.01 E-value=37 Score=23.58 Aligned_cols=51 Identities=12% Similarity=0.135 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|.+.|++|+++... .++.++. +|-++.--=..|+-+++.++|+...+.|
T Consensus 59 ~~A~~~~~~al~~~~~-~~~~~~~-~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 59 AECVQFCEKAVEVGRE-TRADYKL-IAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHHHHHHHHHHHHH-TTCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcc-cchhhHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5689999999998753 4444443 4433333233467789999999876654
No 72
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=58.63 E-value=13 Score=25.53 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
-+++++.++.+.|+|++.+.+.+++.+.+|+
T Consensus 45 A~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 45 ALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4567788888888888888888888877766
No 73
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=57.85 E-value=44 Score=26.52 Aligned_cols=69 Identities=10% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCch-HHHHHHHHHHHHHHHhCChHHHHHhh
Q 028895 120 STVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPI-RLGLALNFSVFYYEIMNSPERFVRYY 198 (202)
Q Consensus 120 skvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~Pi-rLgLaLN~SVF~yEi~~~~~~A~~i~ 198 (202)
..+..+...|..|...-+ -+.|...|++|+++++. .+ .+|. ...+..|.+.. |.-+|+.++|+...
T Consensus 153 ~~~~~~~~lg~~y~~~~~----------~~~A~~~~~kal~~~~~-~~-~~~~~~~~~~~nlg~~-y~~~~~y~~Al~~~ 219 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGY----------LKKGIDLFEQILKQLEA-LH-DNEEFDVKVRYNHAKA-LYLDSRYEESLYQV 219 (293)
T ss_dssp HHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHHHH-HHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHh-cC-ccccchHHHHHhHHHH-HHHHhhHHHHHHHH
Confidence 334455555665543321 35689999999999863 43 3332 22455566554 45789999999887
Q ss_pred hhh
Q 028895 199 MHC 201 (202)
Q Consensus 199 ~~~ 201 (202)
+.|
T Consensus 220 ~ka 222 (293)
T 2qfc_A 220 NKA 222 (293)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 74
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=56.67 E-value=62 Score=24.48 Aligned_cols=45 Identities=13% Similarity=0.145 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYK 53 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayK 53 (202)
+-+..++.+..+.|+|++.+..++++++.+|.- .+-...+..+|.
T Consensus 40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~-~~a~~~lg~~~~ 84 (217)
T 2pl2_A 40 EALYWLARTQLKLGLVNPALENGKTLVARTPRY-LGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 345678899999999999999999999988764 344444455443
No 75
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=56.25 E-value=76 Score=25.41 Aligned_cols=58 Identities=10% Similarity=-0.055 Sum_probs=41.6
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
+.++.+|....+.|+|++.+.+.+++++.+|.- .+-...+..+|-. .+....|...+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~-~g~~~~A~~~~~ 123 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD-AEAWQFLGITQAE-NENEQAAIVALQ 123 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHH-CCCHHHHHHHHH
Confidence 347889999999999999999999999877653 4445555555543 345555555554
No 76
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.57 E-value=27 Score=23.68 Aligned_cols=12 Identities=8% Similarity=0.002 Sum_probs=5.5
Q ss_pred hCChHHHHHhhh
Q 028895 188 MNSPERFVRYYM 199 (202)
Q Consensus 188 ~~~~~~A~~i~~ 199 (202)
+++.++|....+
T Consensus 112 ~~~~~~A~~~~~ 123 (148)
T 2dba_A 112 LGRLDQAVLDLQ 123 (148)
T ss_dssp HTCHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 444444444443
No 77
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=54.28 E-value=80 Score=25.07 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD 37 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 37 (202)
-+-..+.+....|+|++.+++..+.++..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~ 67 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQ 67 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 35556777888899999998888888654
No 78
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=54.14 E-value=44 Score=22.01 Aligned_cols=57 Identities=7% Similarity=0.011 Sum_probs=40.6
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 66 (202)
.-+..+|.+..+.|+|++.+.+++++++.+|.... =...+..+|.. .+..-.|...+
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-a~~~lg~~~~~-~g~~~~A~~~~ 64 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVG-TYYHLGKLYER-LDRTDDAIDTY 64 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-HHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHH-cCCHHHHHHHH
Confidence 34567899999999999999999999998877543 44556666644 34444444444
No 79
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=53.04 E-value=36 Score=24.33 Aligned_cols=31 Identities=23% Similarity=0.164 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L 40 (202)
...+|++..+.|+|++.+++.+++++.+|.-
T Consensus 34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 34 GFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 4678999999999999999999999987753
No 80
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=52.56 E-value=40 Score=21.61 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++ .|.+|. ...|.+.. |--+|+.++|+...+.|
T Consensus 21 ~~A~~~~~~al~~-----~p~~~~---~~~~lg~~-~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 21 REAVHCYDQLITA-----QPQNPV---GYSNKAMA-LIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHH-----CTTCHH---HHHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCHH---HHHHHHHH-HHHhcCHHHHHHHHHHH
Confidence 4688889888865 455542 33455443 44688999998877654
No 81
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=51.72 E-value=65 Score=23.25 Aligned_cols=57 Identities=9% Similarity=0.007 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+..++.+..+.|+|++.+.+++++++.++.. .+-...+..+|-. .+....+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~ 66 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKN-ELAWLVRAEIYQY-LKVNDKAQESFR 66 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHH-cCChHHHHHHHH
Confidence 34567888888899999999998888776543 3344444554432 344455555553
No 82
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=51.59 E-value=91 Score=24.92 Aligned_cols=58 Identities=16% Similarity=0.253 Sum_probs=38.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
.-+..++.+..+.|+|++.+.+.+++++.+|.- .+-...+..+|.. .+....|...+.
T Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~ 157 (365)
T 4eqf_A 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNN-LKALMALAVSYTN-TSHQQDACEALK 157 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHc-cccHHHHHHHHH
Confidence 345678888899999999999999999877653 3444455555543 344445555543
No 83
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=51.01 E-value=63 Score=22.89 Aligned_cols=14 Identities=14% Similarity=-0.035 Sum_probs=7.6
Q ss_pred HhCChHHHHHhhhh
Q 028895 187 IMNSPERFVRYYMH 200 (202)
Q Consensus 187 i~~~~~~A~~i~~~ 200 (202)
-+++.++|....+.
T Consensus 91 ~~g~~~~A~~~~~~ 104 (164)
T 3sz7_A 91 DMADYKGAKEAYEK 104 (164)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HccCHHHHHHHHHH
Confidence 35566666555443
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=50.91 E-value=42 Score=26.82 Aligned_cols=50 Identities=6% Similarity=-0.081 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|.++|++|.++... + -+|...+.+++-.-..|.-+|++++|+...+.|
T Consensus 54 ~~A~~~~~~al~~~~~-~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A 103 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKK-A--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA 103 (292)
T ss_dssp HHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5689999999998863 3 256666667776677788899999998876654
No 85
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=50.44 E-value=42 Score=20.68 Aligned_cols=44 Identities=16% Similarity=0.285 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++ .|.+| ....|.+.. |.-+++.++|....+.|
T Consensus 26 ~~A~~~~~~a~~~-----~~~~~---~~~~~l~~~-~~~~~~~~~A~~~~~~a 69 (91)
T 1na3_A 26 DEAIEYYQKALEL-----DPNNA---EAWYNLGNA-YYKQGDYDEAIEYYQKA 69 (91)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-----CCCCH---HHHHHHHHH-HHHHhhHHHHHHHHHHH
Confidence 4688888888865 34444 233444444 44589999998877654
No 86
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=50.22 E-value=15 Score=33.56 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=20.9
Q ss_pred hccccccchhhcccchHHHHHHHHHHHHHHHHHHH
Q 028895 128 KGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAA 162 (202)
Q Consensus 128 kGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a 162 (202)
-||..||.... ..|...|++|..+.
T Consensus 158 LGDL~RY~~~~----------~~A~~~Y~~A~~~~ 182 (497)
T 1ya0_A 158 LGDIARYRNQT----------SQAESYYRHAAQLV 182 (497)
T ss_dssp HHHHHHHTTCH----------HHHHHHHHHHHHHC
T ss_pred cccHHHHHHHH----------HHHHHHHHHHHHhC
Confidence 79999999764 47899999998764
No 87
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=48.93 E-value=46 Score=22.29 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++ .|.+| ....|.++. |.-+|+.++|....+.|
T Consensus 44 ~~A~~~~~~al~~-----~p~~~---~~~~~l~~~-~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 44 RKAEAVLANGVKQ-----FPNHQ---ALRVFYAMV-LYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHH-HHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCch---HHHHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 5688888888765 45554 344555544 44589999999877654
No 88
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=48.53 E-value=38 Score=23.61 Aligned_cols=58 Identities=9% Similarity=0.086 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
-+..+|.+..+.|+|++.+...+++++.+|.- .+=...+..+|.. .+..-.|...+..
T Consensus 49 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~lg~~~~~-~~~~~~A~~~~~~ 106 (126)
T 4gco_A 49 LYSNRAACLTKLMEFQRALDDCDTCIRLDSKF-IKGYIRKAACLVA-MREWSKAQRAYED 106 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHH-CCCHHHHHHHHHH
Confidence 44568888999999999999999999887764 4445666777754 4566667666643
No 89
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=46.63 E-value=60 Score=21.41 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=41.4
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
.-+..+|.+..+.|+|++.+.+.++++..+|.. .+-...+..+|.. .+....|...+.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~ 77 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY-SVAWKWLGKTLQG-QGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345678899999999999999999999887654 3445556666654 355555555554
No 90
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=45.46 E-value=92 Score=23.20 Aligned_cols=57 Identities=7% Similarity=0.051 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+..+|.+..+.|+|++.+.+++++++.++.. .+-...+..+|-. .+..-.|...+.
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~ 95 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS-ADAHAALAVVFQT-EMEPKLADEEYR 95 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 34567777778888888888888887765443 3334444444432 334444444443
No 91
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=44.74 E-value=41 Score=25.86 Aligned_cols=46 Identities=11% Similarity=0.120 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHh--ccCCCCCc-------hHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAE--ADLPPTHP-------IRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~--~~L~pt~P-------irLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|..+|.+|+++-. -++.|.++ .|+|.+|. -+|+.++|+.-.+.|
T Consensus 74 ~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~-------~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 74 DEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALD-------GLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHH-------HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHH-------HCCCHHHHHHHHHHH
Confidence 358899999998722 24667665 45566654 578888877765543
No 92
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=44.56 E-value=1.4e+02 Score=24.87 Aligned_cols=57 Identities=12% Similarity=0.005 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+..++.+..+.|+|++.+...+++++.++.-. +-...+..+|-. .+....+...+.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~A~~~~~ 362 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENI-FPYIQLACLAYR-ENKFDDCETLFS 362 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS-HHHHHHHHHTTT-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH-HHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345677888888888888888888887766533 233333333322 344455555554
No 93
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens}
Probab=44.27 E-value=33 Score=24.83 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHhhcC-CCCCHHHHHHHHhhhhhhhch----------------hhhHHHHHH
Q 028895 21 ERYDEMVDAMKNVAKLD-VELTVEERNLLSVGYKNVIGA----------------RRASWRILS 67 (202)
Q Consensus 21 eRy~dm~~~mk~~i~~~-~~L~~eERnLlsvayKn~i~~----------------~R~s~R~l~ 67 (202)
++|+.+++.++.+-..+ ..++.+++-.|-.-||..... +..||..+.
T Consensus 10 ~~F~~A~~~vk~l~~~g~~~ps~e~~L~LYaLyKQAt~Gd~~~~~Pg~~d~~~~aKw~AW~~l~ 73 (106)
T 2wh5_A 10 KQFQAAVSVIQNLPKNGSYRPSYEEMLRFYSYYKQATMGPCLVPRPGFWDPIGRYKWDAWNSLG 73 (106)
T ss_dssp HHHHHHHHHHHHSCSSCSCCCCHHHHHHHHHHHHHHHHCSCCSCCCCTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhhhccCCCCCCCCCcccHHHHHHHHHHHHhc
Confidence 56888899988865433 368999999898888887532 567777764
No 94
>1lyp_A CAP18; lipopolysaccharide-binding protein; NMR {Oryctolagus cuniculus} SCOP: j.17.1.1
Probab=43.44 E-value=42 Score=18.70 Aligned_cols=27 Identities=26% Similarity=0.603 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhh
Q 028895 83 KRIKEYRQKVESELSDICNDIMTVIDE 109 (202)
Q Consensus 83 ~~i~~y~~ki~~EL~~iC~eii~lid~ 109 (202)
+.+..|+.+|.+.|..|-+.|-.++.+
T Consensus 4 krlrkfrnkikeklkkigqkiqgllpk 30 (32)
T 1lyp_A 4 KRLRKFRNKIKEKLKKIGQKIQGLLPK 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 456788999999999999888877643
No 95
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=43.37 E-value=43 Score=23.78 Aligned_cols=57 Identities=7% Similarity=-0.128 Sum_probs=39.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+..+|.+..+.|+|++.+.+..++++.+|.- ..=...+..+|.. .+....|...+.
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~-~~a~~~~g~~~~~-~g~~~~A~~~~~ 121 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETN-EKALFRRAKARIA-AWKLDEAEEDLK 121 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc-hHHHHHHHHHHHH-HhcHHHHHHHHH
Confidence 34567888888999999999999999887653 4445555666644 455566666554
No 96
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=43.32 E-value=65 Score=20.84 Aligned_cols=41 Identities=7% Similarity=0.073 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVG 51 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsva 51 (202)
-+..+|.+..+.|+|++.+.+++++++.++ +.+-...+..+
T Consensus 81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~ 121 (131)
T 1elr_A 81 AYARIGNSYFKEEKYKDAIHFYNKSLAEHR--TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 345778888999999999999999988765 34444444433
No 97
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=43.30 E-value=71 Score=21.29 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=42.5
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
.-+..++.+..+.|+|++.+.+.+++++.+|.- .+=...+..+|-. .+....|...+.
T Consensus 28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~-~g~~~~A~~~~~ 85 (117)
T 3k9i_A 28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNH-QALRVFYAMVLYN-LGRYEQGVELLL 85 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-hHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345678889999999999999999999987765 4555556666644 455566666554
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=42.36 E-value=1.3e+02 Score=24.00 Aligned_cols=51 Identities=2% Similarity=-0.201 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-+.|...|++|+++... .+. +...+.++.-.+..|--+|+.++|....+.|
T Consensus 171 ~~~A~~~~~~al~~~~~-~~~--~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 171 FDEAAASLQKEKSMYKE-MEN--YPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-TTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-cCC--hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35689999999998864 222 2234434444456677789999999877665
No 99
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=42.20 E-value=99 Score=22.65 Aligned_cols=58 Identities=5% Similarity=-0.069 Sum_probs=24.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
..+..+|...-+.|+|++.+.+.+++++.++.- .+-...+..+|-. .+....|...+.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~~ 81 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED-AIPYINFANLLSS-VNELERALAFYD 81 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345677888889999999999999998866543 4444444544432 444555555554
No 100
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=41.89 E-value=74 Score=21.76 Aligned_cols=58 Identities=16% Similarity=0.014 Sum_probs=42.1
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
+....+|...-+.|+|++.+...++++..+|. +.+=...+..++-. .+....|...+.
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~-~g~~~~A~~~~~ 75 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAE-NEKDGLAIIALN 75 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 45678888999999999999999999988765 45555666666643 355555555553
No 101
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=41.81 E-value=72 Score=20.89 Aligned_cols=45 Identities=13% Similarity=0.239 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-+.|...|++|+++ .|.+|. ...|.+. .|.-+|+.++|+...+.|
T Consensus 23 ~~~A~~~~~~al~~-----~p~~~~---a~~~lg~-~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 23 ASRALALFEELVET-----DPDYVG---TYYHLGK-LYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHHHH-----STTCTH---HHHHHHH-HHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----CCCcHH---HHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 35678888888865 345543 3334443 456689999998877654
No 102
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=41.62 E-value=1.4e+02 Score=24.26 Aligned_cols=110 Identities=19% Similarity=0.290 Sum_probs=62.5
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHH
Q 028895 13 VAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKV 92 (202)
Q Consensus 13 ~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki 92 (202)
.|+|.+....|-.|++-+|.-.. +..|-.|.=.-||=.+.. +|.+. +.+.++..=+..-.+-
T Consensus 100 iarllekiqkyfQ~IEtlK~ql~-----nf~e~RLiYDHYKlKvdE----------LEK~~---KdSeKI~RNQsKLssA 161 (294)
T 3caz_A 100 IARLLEKIQKYRQEIEEIKKEYK-----ETDKYRERYDHYKVKLDN----------LEKKN---KDQERIERNQQKFKDA 161 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH----------HHHHT---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHhHHH----------HHhcc---chHHHHHHhHHHhhhH
Confidence 57788888788888877765221 234455555555543332 23221 2223333223333344
Q ss_pred HHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHh
Q 028895 93 ESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAE 163 (202)
Q Consensus 93 ~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~ 163 (202)
+.--..+|-|+|+-.++ +-|.|+|-++|..+. +=..+--|-+|++.|.
T Consensus 162 EtaYkqvcsDiInkMnk-----------------ll~n~~riineaasa------vwstqlqyakaleaaa 209 (294)
T 3caz_A 162 EAAYSSVCADLIQKMET-----------------VWKKHVSIFAEAASA------VWSTQLQYAKALEAAA 209 (294)
T ss_dssp HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhc
Confidence 55566788888887764 347778888876543 2234455888888774
No 103
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=40.84 E-value=75 Score=20.89 Aligned_cols=45 Identities=7% Similarity=-0.085 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+.+ .|.+|. ...|.+.. |.-+|+.++|....+.|
T Consensus 35 ~~~A~~~~~~al~~-----~p~~~~---~~~~la~~-~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 35 FDAALPHLRAALDF-----DPTYSV---AWKWLGKT-LQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHHHHHH-----CTTCHH---HHHHHHHH-HHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----CCCcHH---HHHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 34688888888864 344442 23444443 45589999998877654
No 104
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=40.81 E-value=53 Score=20.15 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=41.0
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
.-+..+|.+..+.|+|++.+.+.++++..+|.- .+-...+..+|-. .+....|...+..
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~ 68 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN-AEAWYNLGNAYYK-QGDYDEAIEYYQK 68 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHH-HhhHHHHHHHHHH
Confidence 345678889999999999999999999876653 3444455555543 4555666666643
No 105
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=40.33 E-value=1.2e+02 Score=23.10 Aligned_cols=59 Identities=14% Similarity=0.058 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcCCC--CCHHHHHHHHhhhhhh---------hchhhhHHHHHHhH
Q 028895 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVE--LTVEERNLLSVGYKNV---------IGARRASWRILSSI 69 (202)
Q Consensus 11 i~~AklaeqaeRy~dm~~~mk~~i~~~~~--L~~eERnLlsvayKn~---------i~~~R~s~R~l~~~ 69 (202)
..+|.+..+.|+|++.+...+++++..|. ...+-...+..+|.+. .+....|...+..+
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~ 221 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence 67899999999999999999999987654 3455666777777654 14445555555433
No 106
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=40.05 E-value=1.2e+02 Score=23.17 Aligned_cols=56 Identities=16% Similarity=0.115 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 66 (202)
-+..++.+..+.|+|++.+.+.+++++.+|.- .+-...+..+|-. .+....|.+.+
T Consensus 57 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~~~~~~A~~~~ 112 (327)
T 3cv0_A 57 AWRSLGLTQAENEKDGLAIIALNHARMLDPKD-IAVHAALAVSHTN-EHNANAALASL 112 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC-HHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 34566777777788888888887777765542 3333444444422 33344444444
No 107
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=39.10 E-value=82 Score=25.23 Aligned_cols=50 Identities=10% Similarity=-0.017 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHH-HHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLG-LALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLg-LaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|+++... . .+|...+ ...|.+.+ |.-+|+.++|+...+.|
T Consensus 131 ~~~A~~~~~~Al~~~~~-~--~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 131 LSKAVHLYQQAAAVFEN-E--ERLRQAAELIGKASRL-LVRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-C--CChhHHHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Confidence 45689999999999864 2 2333333 34455554 45689999999887654
No 108
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=38.52 E-value=1.2e+02 Score=22.53 Aligned_cols=60 Identities=7% Similarity=-0.079 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSI 69 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~ 69 (202)
.-+..+|.+..+.|+|++...+++++++.++.- ..-...+..+|-. .+....+.+.+...
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~la~~~~~-~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRN-ARVLNNYGGFLYE-QKRYEEAYQRLLEA 131 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc-HHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 345678889999999999999999999876653 4444445555533 45555666665433
No 109
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=38.21 E-value=39 Score=28.67 Aligned_cols=52 Identities=17% Similarity=0.189 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHhcc--------CCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEAD--------LPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~--------L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+++.... ....+|....+.+|.+..|+ -+++.++|+..+..|
T Consensus 240 ~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 240 EMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHH
Confidence 56888999999865431 11156777788888888776 689999999888765
No 110
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=38.20 E-value=74 Score=20.13 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L 40 (202)
.+.+|...-+.|+|++.+...+++++.+|.-
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 33 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVG 33 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc
Confidence 3567888889999999999999999877653
No 111
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=38.11 E-value=98 Score=21.38 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=16.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
+..+|....+.|+|++.+...++++..+|
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p 49 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLDH 49 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhCC
Confidence 44455555566666666666666655544
No 112
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=37.92 E-value=71 Score=23.02 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=24.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L 40 (202)
+-+..++.+..+.|+|++.+..+.+++..+|..
T Consensus 109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 109 ELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 345567778888888888888888888777654
No 113
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=37.68 E-value=55 Score=20.80 Aligned_cols=33 Identities=3% Similarity=0.202 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCC
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELT 41 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~ 41 (202)
-+..+|.+....|+|++.+.+.+++++.+|.-.
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 69 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP 69 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH
Confidence 456788899999999999999999998877654
No 114
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=37.58 E-value=1.1e+02 Score=21.62 Aligned_cols=29 Identities=10% Similarity=0.157 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
+..++.+..+.|+|++.+.+..++++.++
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p 42 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAP 42 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34445555555555555555555554443
No 115
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=37.51 E-value=49 Score=21.17 Aligned_cols=29 Identities=10% Similarity=0.016 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcC
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLD 37 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~ 37 (202)
.+..++.+....|+|++.+...++++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 34 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQ 34 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455556666666666666666665443
No 116
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=37.43 E-value=1.9e+02 Score=24.55 Aligned_cols=47 Identities=15% Similarity=0.108 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhc
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIG 57 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~ 57 (202)
+..++.+..+.|+|++.+.+..++++.+|. +..=.+-+..+|...-+
T Consensus 203 ~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~ 249 (382)
T 2h6f_A 203 WQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTG 249 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcC
Confidence 445667777777777777777777776655 33344444555544333
No 117
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=36.36 E-value=1.2e+02 Score=22.00 Aligned_cols=44 Identities=16% Similarity=0.018 Sum_probs=26.7
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGY 52 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvay 52 (202)
+-+..+|....+.|+|++.+.+.++++..+|. +.+=...|..+|
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~ 80 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 44556667777777777777777777766554 233344444444
No 118
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=36.14 E-value=2.8e+02 Score=26.03 Aligned_cols=32 Identities=13% Similarity=0.203 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L 40 (202)
-+..++.+..+.|+|++.+.+.+++++.+|+.
T Consensus 45 a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~ 76 (723)
T 4gyw_A 45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTF 76 (723)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 45678899999999999999999999988765
No 119
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=36.01 E-value=80 Score=19.75 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=13.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcC
Q 028895 12 YVAKLAEQAERYDEMVDAMKNVAKLD 37 (202)
Q Consensus 12 ~~AklaeqaeRy~dm~~~mk~~i~~~ 37 (202)
.+|.+..+.|+|++.+.+.+++++.+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~ 36 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD 36 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 34444445555555555555555443
No 120
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=35.15 E-value=89 Score=20.04 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
-+..+|.+..+.|+|++.+.+..+++..++.- ..-...+..+|-. .+....|...+..
T Consensus 48 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAY-SKAYGRMGLALSS-LNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhcCccC-HHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45678899999999999999999999876553 4445555555543 4556667666654
No 121
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=34.90 E-value=1.2e+02 Score=21.45 Aligned_cols=29 Identities=10% Similarity=0.139 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~ 38 (202)
+..+|.+..+.|+|++.+.+++++++.+|
T Consensus 47 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p 75 (177)
T 2e2e_A 47 WALLGEYYLWQNDYSNSLLAYRQALQLRG 75 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 34455555556666666666666555443
No 122
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=34.74 E-value=1.4e+02 Score=22.26 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHH
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 66 (202)
+..++.+....|+|++.+.+.+++++.+|. +.+-...+..+|-. .+....|...+
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~-~~~~~~A~~~~ 100 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQ-AGNFDAAYEAF 100 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHH-ccCHHHHHHHH
Confidence 445667777777777777777777766554 23334444444432 23334444444
No 123
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=34.69 E-value=56 Score=23.20 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=28.7
Q ss_pred hCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhh
Q 028895 20 AERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVI 56 (202)
Q Consensus 20 aeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i 56 (202)
+++|+..++.++.+-. ..++.+++-.|-.-||...
T Consensus 11 ~~~F~~A~~~vk~l~~--~~ps~~~~L~LYaLyKQAt 45 (96)
T 2lbb_A 11 ADDFDAAVKYVSNTTT--MMASNDDKLCFYKYYKQAT 45 (96)
T ss_dssp SSTHHHHHHHHHHCCC--SCCCTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCC--CCCCHHHHHHHHHHHHHHh
Confidence 6789999999988543 6789999988888888775
No 124
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=34.59 E-value=85 Score=24.51 Aligned_cols=75 Identities=15% Similarity=0.151 Sum_probs=49.3
Q ss_pred CCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCC----CchHHHHHHHHHHHHHHHh
Q 028895 113 PSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPT----HPIRLGLALNFSVFYYEIM 188 (202)
Q Consensus 113 p~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt----~PirLgLaLN~SVF~yEi~ 188 (202)
-.+.++++-.-|+++--+. -.+..+ ...++-.+.|+.|.. ++||+ ..-+.=|=++|+.| -|+
T Consensus 8 ~~p~~yd~W~~yl~llE~~------g~p~~d--~~l~rlrd~YerAia----~~Pp~k~~~wrrYI~LWIrYA~~-~ei- 73 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKN------SVPLSD--ALLNKLIGRYSQAIE----ALPPDKYGQNESFARIQVRFAEL-KAI- 73 (161)
T ss_dssp --CCSHHHHHHHHHHHHHH------TCSCCH--HHHHHHHHHHHHHHH----HSCGGGGTTCHHHHHHHHHHHHH-HHH-
T ss_pred eCCCCHHHHHHHHHHHHHc------CCCchh--hHHHHHHHHHHHHHH----cCCccccccHHHHHHHHHHHHHH-HHh-
Confidence 3455677777777664221 002122 466777899998865 46664 34556688999998 455
Q ss_pred CChHHHHHhhhhh
Q 028895 189 NSPERFVRYYMHC 201 (202)
Q Consensus 189 ~~~~~A~~i~~~~ 201 (202)
+|+++|.++-+.|
T Consensus 74 ~D~d~aR~vy~~a 86 (161)
T 4h7y_A 74 QEPDDARDYFQMA 86 (161)
T ss_dssp HCGGGCHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9999999988877
No 125
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=34.07 E-value=1.3e+02 Score=21.98 Aligned_cols=66 Identities=18% Similarity=0.224 Sum_probs=42.2
Q ss_pred HHHHhhhhhhhchhhhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHH-H----HHHhHHHHHHHHhhccCCCCC-CCh
Q 028895 46 NLLSVGYKNVIGARRASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVES-E----LSDICNDIMTVIDEHLIPSAS-AGE 119 (202)
Q Consensus 46 nLlsvayKn~i~~~R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~-E----L~~iC~eii~lid~~Lip~~~-~~e 119 (202)
+++|+||+. ++-+.++...+.|.++-+++.+ + ...+|...-..|-++++-+.. -|+
T Consensus 10 ~~lS~AY~D------------------peVk~~p~Lr~~lf~~Ak~L~~~~d~~~y~~V~~KLs~~IS~Y~l~hh~~~P~ 71 (111)
T 1tdp_A 10 LNLSEAYKD------------------PEVKANEFLSKLVVQCAGKLTASNSENSYIEVISLLSRGISSYYLSHKRIIPS 71 (111)
T ss_dssp HHHHHHHTC------------------HHHHSCHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHTCTTSCCCCCG
T ss_pred HHHHHHhCC------------------HhhhcCHHHHHHHHHHHHHhccCCCcchhHhHHHHHHhHHHHHHHHhcccCcH
Confidence 567888876 2334555666677777777665 3 667788878888887776544 344
Q ss_pred HH-HHHHHhhc
Q 028895 120 ST-VFFYKMKG 129 (202)
Q Consensus 120 sk-vFy~KmkG 129 (202)
+- ..|...+.
T Consensus 72 ali~L~~~I~k 82 (111)
T 1tdp_A 72 SMLTIYTQIQK 82 (111)
T ss_dssp GGTHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 33 35555555
No 126
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=33.43 E-value=1.5e+02 Score=22.10 Aligned_cols=76 Identities=9% Similarity=-0.042 Sum_probs=45.8
Q ss_pred HHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhH--Hh--hHhhhCchHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 028895 30 MKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSI--EQ--KEEAKGNEVNAKRIKEYRQKVESELSDICNDIMT 105 (202)
Q Consensus 30 mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~--eq--~~~~~~~~~~~~~i~~y~~ki~~EL~~iC~eii~ 105 (202)
-+..|-..-| |.|-|.=|.--.|...-.-|-|.|-+..- .. +.+..+ .+-++-..+.++++..+.+..+.
T Consensus 34 ~~~~IRl~iP-TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~-----eiSEDe~k~~e~eIQKLTDkyIk 107 (123)
T 3lhp_S 34 FKAAVRKVFP-TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDK-----EINWFDISQSLWDVQKLTDAAIK 107 (123)
T ss_dssp HHHHHTTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCT-----TSCGGGHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEeeCC-CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcC-----CCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444544545 99999999988888888888888887531 11 100011 01122334566777777777777
Q ss_pred HHhhcc
Q 028895 106 VIDEHL 111 (202)
Q Consensus 106 lid~~L 111 (202)
-||..|
T Consensus 108 kID~ll 113 (123)
T 3lhp_S 108 KIEAAL 113 (123)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777654
No 127
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=33.03 E-value=1.1e+02 Score=21.07 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhh
Q 028895 21 ERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVI 56 (202)
Q Consensus 21 eRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i 56 (202)
++|+.+++.++.+-. ...++.+++-.|-.-||-.+
T Consensus 4 ~~F~~A~~~v~~l~~-~~~~~~~~~L~LYalyKQAt 38 (89)
T 1hbk_A 4 QVFEECVSFINGLPR-TINLPNELKLDLYKYYKQST 38 (89)
T ss_dssp HHHHHHHHHHHHSCT-TCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-cCCCCHHHHHHHHHHHHHhh
Confidence 468888888887543 36789999998888888774
No 128
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=32.95 E-value=97 Score=21.12 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=16.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 11 i~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
..++.+..+.|++++.+.+.+++++.+|.
T Consensus 55 ~~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 55 RSLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 34555555566666666666666655544
No 129
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=32.90 E-value=67 Score=25.66 Aligned_cols=46 Identities=7% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
.+.|...|++|++ ++|.+|-. +-+|++.|+.. .|+.++|..+.+.|
T Consensus 115 ~~~A~~~~~~al~-----~~p~~~~~--~~~~~~~~~~~-~~~~~~A~~~~~~a 160 (308)
T 2ond_A 115 YEKVHSIYNRLLA-----IEDIDPTL--VYIQYMKFARR-AEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHHT-----SSSSCTHH--HHHHHHHHHHH-HHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----ccccCccH--HHHHHHHHHHH-hcCHHHHHHHHHHH
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=32.44 E-value=1e+02 Score=22.38 Aligned_cols=44 Identities=9% Similarity=0.129 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+.|...|++|+.+ .|.+| ....|.+..++ -+|+.++|+...+.|
T Consensus 54 ~~A~~~~~~al~~-----~~~~~---~~~~~lg~~~~-~~~~~~~A~~~~~~a 97 (213)
T 1hh8_A 54 TEAEKAFTRSINR-----DKHLA---VAYFQRGMLYY-QTEKYDLAIKDLKEA 97 (213)
T ss_dssp HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----Cccch---HHHHHHHHHHH-HcccHHHHHHHHHHH
Confidence 5688899998875 24444 33445555444 489999998877654
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=32.14 E-value=58 Score=23.85 Aligned_cols=27 Identities=15% Similarity=0.217 Sum_probs=13.7
Q ss_pred HHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 13 VAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 13 ~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
++.+..+.|+|++.+.+.++++..+|.
T Consensus 76 lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 76 LAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 344444555555555555555554443
No 132
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=31.41 E-value=1.6e+02 Score=21.73 Aligned_cols=36 Identities=19% Similarity=0.202 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhhcCC-CCCHHHHHHHHhhhhhhh
Q 028895 21 ERYDEMVDAMKNVAKLDV-ELTVEERNLLSVGYKNVI 56 (202)
Q Consensus 21 eRy~dm~~~mk~~i~~~~-~L~~eERnLlsvayKn~i 56 (202)
++|+.++..++.+-..++ .++.+++-.|=.-||.+.
T Consensus 26 ~~F~~A~~~Vk~l~~~g~~~ps~d~~L~LYaLyKQAT 62 (119)
T 3flv_A 26 TRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQAT 62 (119)
T ss_dssp HHHHHHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHHh
Confidence 569999999999877654 689999998888888766
No 133
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=31.09 E-value=1e+02 Score=19.39 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=39.9
Q ss_pred hHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 7 re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+.+..+|.+..+.|+|++.+.+..+++..+|. +..-...+..+|-. .+....+...+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~-~~~~~~A~~~~~ 62 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAK-KGDYQKAYEDGC 62 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-HTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHh-hccHHHHHHHHH
Confidence 345677888888999999999999998877654 34445555555543 344555555554
No 134
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=31.06 E-value=1.6e+02 Score=21.88 Aligned_cols=57 Identities=19% Similarity=0.176 Sum_probs=37.8
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+..+|.+..+.|+|++.+.+.+++++.+|.-. +-...+..+|-. .+....|...+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~la~~~~~-~g~~~~A~~~~~ 135 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-YAHLNRGIALYY-GGRDKLAQDDLL 135 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-HHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc-HHHHHHHHHHHH-hccHHHHHHHHH
Confidence 345678888888999999999999888766543 334444444433 455555666554
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=31.00 E-value=1.2e+02 Score=22.10 Aligned_cols=58 Identities=19% Similarity=0.177 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
-+..+|.+..+.|+|++++.+..+++..++. +..=...+..+|-. .+....|...+..
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~-~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMY-FGFLEEAKENLYK 147 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHH-cccHHHHHHHHHH
Confidence 4556888888999999999999999987654 34445556666633 4555666666543
No 136
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=30.98 E-value=1.7e+02 Score=22.11 Aligned_cols=177 Identities=13% Similarity=0.076 Sum_probs=87.4
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcC-------CCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhH-hh--hCch
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLD-------VELTVEERNLLSVGYKNVIGARRASWRILSSIEQKE-EA--KGNE 79 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~-------~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~-~~--~~~~ 79 (202)
+..+|.+....|+|++.+.++++++... .+....-...+..+|-. .+....|...+....+.. .. ....
T Consensus 72 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 72 LNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 4578888889999999999999988642 12222233344444432 344455555554322221 10 0011
Q ss_pred HHHH----HHHHH-HHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHH
Q 028895 80 VNAK----RIKEY-RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKA 154 (202)
Q Consensus 80 ~~~~----~i~~y-~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~a 154 (202)
.... +..-| ...=-++-.......+++.....-+. ....+..+-..|..|... | -.+.|...
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~---~~~~~~~~~~la~~~~~~-----g-----~~~~A~~~ 217 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD---DPNVAKTKNNLASCYLKQ-----G-----KFKQAETL 217 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT---CHHHHHHHHHHHHHHHHH-----T-----CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHc-----C-----CHHHHHHH
Confidence 1110 00001 00111333444455555544322111 223333444445544322 1 13467888
Q ss_pred HHHHHHHHhc-----------------------------------------cCCCCCchHHHHHHHHHHHHHHHhCChHH
Q 028895 155 YETATTAAEA-----------------------------------------DLPPTHPIRLGLALNFSVFYYEIMNSPER 193 (202)
Q Consensus 155 Y~~A~~~a~~-----------------------------------------~L~pt~PirLgLaLN~SVF~yEi~~~~~~ 193 (202)
|++|++++.. .....+|-......+.+. .|.-.|+.++
T Consensus 218 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~ 296 (311)
T 3nf1_A 218 YKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGA-LYRRQGKFEA 296 (311)
T ss_dssp HHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHH-HHHHHTCHHH
T ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHH-HHHHCCCHHH
Confidence 8888876532 111245655555555554 4556899999
Q ss_pred HHHhhhhh
Q 028895 194 FVRYYMHC 201 (202)
Q Consensus 194 A~~i~~~~ 201 (202)
|....+.|
T Consensus 297 A~~~~~~a 304 (311)
T 3nf1_A 297 AETLEEAA 304 (311)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988765
No 137
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=30.89 E-value=1.3e+02 Score=22.91 Aligned_cols=52 Identities=8% Similarity=0.022 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCchHH-----HHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 148 AANSMKAYETATTAAEADLPPTHPIRL-----GLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~~~L~pt~PirL-----gLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
-+.|..+|++|+++.-. .|+..++.+ ..-.|-+.- +.-+|+.++|+..+..|
T Consensus 27 ~eeAi~~Y~kAL~l~p~-~~~~~a~~~~~~~a~a~~n~g~a-l~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 27 YDEAAANCRRAMEISHT-MPPEEAFDHAGFDAFCHAGLAEA-LAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTT-SCTTSCCCHHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCC-CcchhhhhhccchHHHHHHHHHH-HHHCCCHHHHHHHHHHH
Confidence 45699999999998753 332223222 255666544 44578898888876654
No 138
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=30.01 E-value=2.7e+02 Score=23.97 Aligned_cols=161 Identities=13% Similarity=0.066 Sum_probs=75.9
Q ss_pred HHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchh-hhHHHHHHhHHhhHhhhCchHHHHHHHHHHHHHHHHH
Q 028895 18 EQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGAR-RASWRILSSIEQKEEAKGNEVNAKRIKEYRQKVESEL 96 (202)
Q Consensus 18 eqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~-R~s~R~l~~~eq~~~~~~~~~~~~~i~~y~~ki~~EL 96 (202)
+..+++++.+..+...... .+-+.+-...+..+|-. .+.. ..|...+....+... ........+-.-|...
T Consensus 79 ~~~~~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~-~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~----- 150 (474)
T 4abn_A 79 DVQEEMEKTLQQMEEVLGS-AQVEAQALMLKGKALNV-TPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKK----- 150 (474)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTS-SSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHh-ccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHc-----
Confidence 3345567777777765543 33455666666666644 4555 566666543222211 0001111111111111
Q ss_pred HHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHH
Q 028895 97 SDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGL 176 (202)
Q Consensus 97 ~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgL 176 (202)
.--.+.+..+++.|--. +. ...+...|..|+.+.. ....++..-.+.|...|++|+++ .|.+|. .
T Consensus 151 -g~~~~A~~~~~~al~~~---p~--~~~~~~lg~~~~~~~~-~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~---~ 215 (474)
T 4abn_A 151 -GDVTSAHTCFSGALTHC---KN--KVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQM-----DVLDGR---S 215 (474)
T ss_dssp -TCHHHHHHHHHHHHTTC---CC--HHHHHHHHHHHTTCCC-SCHHHHHHHHHHHHHHHHHHHHH-----CTTCHH---H
T ss_pred -CCHHHHHHHHHHHHhhC---CC--HHHHHHHHHHHHHhcc-CChhhhhhhHHHHHHHHHHHHHh-----CCCCHH---H
Confidence 11122333333333111 22 2556667777766522 12222333456789999998875 455553 2
Q ss_pred HHHHHHHHHHH-----h--CChHHHHHhhhhh
Q 028895 177 ALNFSVFYYEI-----M--NSPERFVRYYMHC 201 (202)
Q Consensus 177 aLN~SVF~yEi-----~--~~~~~A~~i~~~~ 201 (202)
..|.+..|... . ++.++|....+.|
T Consensus 216 ~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 216 WYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 23333333322 1 6677887776654
No 139
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=29.47 E-value=2.5e+02 Score=25.78 Aligned_cols=87 Identities=20% Similarity=0.378 Sum_probs=52.7
Q ss_pred hHhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHH---HHHH---hhhhhhhchhhhHHHHHHhHHhhHhhhCchH
Q 028895 7 RENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEER---NLLS---VGYKNVIGARRASWRILSSIEQKEEAKGNEV 80 (202)
Q Consensus 7 re~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eER---nLls---vayKn~i~~~R~s~R~l~~~eq~~~~~~~~~ 80 (202)
+++.++...=..-.++|.+-++-+++++........+|. .+|- .+|..++..-+..+..|..--++|...-+..
T Consensus 107 k~d~~~~khn~~I~~k~g~~l~~v~~~~~~~~~~e~~e~~q~~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~d 186 (526)
T 3iyk_A 107 RNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHA 186 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHH
Confidence 444444333333335577777777777765445555444 4554 4566677777888888876667765444445
Q ss_pred HHHHHHHHHHHHH
Q 028895 81 NAKRIKEYRQKVE 93 (202)
Q Consensus 81 ~~~~i~~y~~ki~ 93 (202)
-...|++||.++.
T Consensus 187 E~~mi~~yr~k~~ 199 (526)
T 3iyk_A 187 ETVMVKEYRDKID 199 (526)
T ss_pred HHHHHHHHHHHHH
Confidence 5667777777654
No 140
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.42 E-value=92 Score=20.77 Aligned_cols=59 Identities=15% Similarity=-0.004 Sum_probs=42.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
.-+..+|.+..+.++|++.+.+.++++..++.- ..-...+..+|-. .+....|...+..
T Consensus 66 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~-~~~~~~A~~~~~~ 124 (148)
T 2dba_A 66 VLHRNRAACHLKLEDYDKAETEASKAIEKDGGD-VKALYRRSQALEK-LGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC-HHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC-HHHHHHHHHHHHH-cCCHHHHHHHHHH
Confidence 345678888999999999999999999876653 4555566666644 4566667666654
No 141
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=29.34 E-value=1.6e+02 Score=21.07 Aligned_cols=60 Identities=8% Similarity=0.055 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSI 69 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~ 69 (202)
-+..++.+..+.|+|++.+.+..++++.++.. .+-...+..+|-...+....+...+...
T Consensus 44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (225)
T 2vq2_A 44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDS-AEINNNYGWFLCGRLNRPAESMAYFDKA 103 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 45678888899999999999999999876653 4444555555544325556666666443
No 142
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=28.83 E-value=1.7e+02 Score=21.38 Aligned_cols=32 Identities=3% Similarity=0.088 Sum_probs=26.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
.-+..++.+..+.|+|++.+.+.++++...+.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 111 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRT 111 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCch
Confidence 34567888999999999999999999987654
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=28.76 E-value=1.5e+02 Score=20.87 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=27.3
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
+-+..+|.+..+.|+|++.+...++++..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~ 53 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY 53 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc
Confidence 45567889999999999999999999987664
No 144
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=28.11 E-value=1.8e+02 Score=21.30 Aligned_cols=56 Identities=13% Similarity=0.083 Sum_probs=34.8
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHH
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRIL 66 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l 66 (202)
+.+..+|...-+.|+|++.+.+..++++.+ -+.+-...+..+|-. .+....|...+
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~-~~~~~~A~~~~ 61 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYE-KGEYETAISTL 61 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHH-cccHHHHHHHH
Confidence 456678888888889999998888888766 333444444444433 23333444444
No 145
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=27.83 E-value=71 Score=22.77 Aligned_cols=30 Identities=7% Similarity=0.185 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVE 39 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~ 39 (202)
...++.+..+.|+|++.+++.+++++.+|.
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~ 139 (184)
T 3vtx_A 110 YYKLGLVYDSMGEHDKAIEAYEKTISIKPG 139 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence 445566666667777777777666665543
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=27.22 E-value=1.1e+02 Score=19.30 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSI 69 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~ 69 (202)
-+..+|.+....|+|++.+.+.++++..++. +..-...+..+|-. .+....++..+...
T Consensus 45 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~-~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYK-QGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 4567889999999999999999999987654 34444555666643 45667777777543
No 147
>2g0u_A Type III secretion system needle protein; helix-turn-helix, unknown function; NMR {Burkholderia pseudomallei} SCOP: a.2.20.1
Probab=27.11 E-value=75 Score=22.55 Aligned_cols=52 Identities=13% Similarity=0.279 Sum_probs=32.5
Q ss_pred ccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHH----HHHHHHHHH
Q 028895 129 GDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLG----LALNFSVFY 184 (202)
Q Consensus 129 GDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLg----LaLN~SVF~ 184 (202)
|+---|+-.+...-+ .-+....+..+.|++-- +..|.||..|+ +.-+|++|+
T Consensus 12 ~~~~~~Ld~vs~~f~--~~a~~~~~~l~~Al~~L--~~~psNPa~LAe~Qa~lseynl~R 67 (92)
T 2g0u_A 12 YEWSGYLTGIGRAFD--DGVKDLNKQLQDAQANL--TKNPSDPTALANYQMIMSEYNLYR 67 (92)
T ss_dssp SSSTHHHHHHHGGGC--TTTHHHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred CcccchHHHHHHHHH--HHHHHHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHH
Confidence 343345555543321 23455677778887644 36899999998 666787764
No 148
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=26.38 E-value=2.6e+02 Score=22.65 Aligned_cols=171 Identities=6% Similarity=0.029 Sum_probs=82.9
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHH-----HHHHHHhhhhhhhchhhhHHHHHHh-HHhhHhhhCchHHHHH
Q 028895 11 VYVAKLAEQAERYDEMVDAMKNVAKLDVELTVE-----ERNLLSVGYKNVIGARRASWRILSS-IEQKEEAKGNEVNAKR 84 (202)
Q Consensus 11 i~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~e-----ERnLlsvayKn~i~~~R~s~R~l~~-~eq~~~~~~~~~~~~~ 84 (202)
.+++...-..|+|++.+.+.+++....+.+..+ =..-+..+|-. .+....|...+.. ++-.....+.......
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYH-MKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 356777788899999999999988653333221 12233344432 2333334433321 1111110000111100
Q ss_pred HHH-----H-HHHHHHHHHHhHHHHHHHHhhccCCCCCCChHHHHHHHhhccccccchhhcccchHHHHHHHHHHHHHHH
Q 028895 85 IKE-----Y-RQKVESELSDICNDIMTVIDEHLIPSASAGESTVFFYKMKGDYYRYLAEFKFGDEKKEAAANSMKAYETA 158 (202)
Q Consensus 85 i~~-----y-~~ki~~EL~~iC~eii~lid~~Lip~~~~~eskvFy~KmkGDyyRYlaE~~~~~~~~~~~~~a~~aY~~A 158 (202)
+-. | ...--++-...+...+++.... .++......+--.|..|.-+ | -.+.|...|++|
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~lg~~y~~~-----~-----~~~~A~~~~~~a 248 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDI-----QNDRFIAISLLNIANSYDRS-----G-----DDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHH-----T-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHH
Confidence 000 0 0011122333444444444321 12223333333445444322 1 145789999999
Q ss_pred HHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 159 TTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 159 ~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
+++++.. .+|.......|.+ -.|.-+|+.++|....+.|
T Consensus 249 l~~~~~~---~~~~~~~~~~~la-~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 249 AKVSREK---VPDLLPKVLFGLS-WTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHH---CGGGHHHHHHHHH-HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhh---CChhHHHHHHHHH-HHHHHCCCHHHHHHHHHHH
Confidence 9998754 3444433333444 4455789999999887765
No 149
>3cjl_A Domain of unknown function; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Pectobacterium atrosepticum SCRI1043}
Probab=26.17 E-value=30 Score=24.43 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=28.4
Q ss_pred hCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhh
Q 028895 20 AERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKN 54 (202)
Q Consensus 20 aeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn 54 (202)
++.+||++..+..+ .....|+.++..-|.|+.|=
T Consensus 24 ~~nhDDi~~Ive~~-~~~~~~~~~~a~af~vGLKL 57 (88)
T 3cjl_A 24 FSLHDDLFKLLEKV-DGKMDMTPEQTQAFMVGLKL 57 (88)
T ss_dssp EEESSCHHHHHHHH-TTTSSSCHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHh-hccCCCCHHHHHHHHHHHHH
Confidence 46788999999887 66788999999999998764
No 150
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=25.81 E-value=1.5e+02 Score=19.72 Aligned_cols=51 Identities=6% Similarity=-0.034 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCChHHHHHhhhhh
Q 028895 149 ANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNSPERFVRYYMHC 201 (202)
Q Consensus 149 ~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~~~~A~~i~~~~ 201 (202)
..|..-|++|+......-. ..+.+-. ++++-.+.|--+|+.++|....+.|
T Consensus 22 ~~A~~W~~~Al~~~~~~~~-~~~~~~~-i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 22 YHTELWMEQALRQLDEGEI-STIDKVS-VLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHHHHHTTCC-CSSCHHH-HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCC-CcccHHH-HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3577888888877642211 1122333 3344455566789999999887765
No 151
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=25.51 E-value=1.7e+02 Score=20.30 Aligned_cols=76 Identities=8% Similarity=0.139 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHhHHhhHh--h-hCchHHHHHHHHHHHHHHHHHHHh
Q 028895 23 YDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSSIEQKEE--A-KGNEVNAKRIKEYRQKVESELSDI 99 (202)
Q Consensus 23 y~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~~eq~~~--~-~~~~~~~~~i~~y~~ki~~EL~~i 99 (202)
|.....-++..+..-+.++-++|+-.......-+..-..=++.+. +|-+.- + .........++.|+..+..||..-
T Consensus 10 f~~~~~~i~~~l~~~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMe-lE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~ 88 (97)
T 3onj_A 10 FKTTLEQAKASLAEAPSQPLSQRNTTLKHVEQQQDELFDLLDQMD-VEVNNSIGDASERATYKAKLREWKKTIQSDIKRP 88 (97)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455545444678888998777777766665544333332 222221 1 011244567888888877766543
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=25.34 E-value=96 Score=21.42 Aligned_cols=24 Identities=13% Similarity=0.196 Sum_probs=11.2
Q ss_pred HHHHHHhCCHHHHHHHHHHHhhcC
Q 028895 14 AKLAEQAERYDEMVDAMKNVAKLD 37 (202)
Q Consensus 14 AklaeqaeRy~dm~~~mk~~i~~~ 37 (202)
+.+..+.|+|++.+.+.++++..+
T Consensus 59 g~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 59 GACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcC
Confidence 344444444444444444444443
No 153
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=24.40 E-value=1.2e+02 Score=23.23 Aligned_cols=68 Identities=16% Similarity=0.236 Sum_probs=40.3
Q ss_pred ccccccchhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCc---hHHHHHHHHHHHH----HHHhCChHHHHHhhhhh
Q 028895 129 GDYYRYLAEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHP---IRLGLALNFSVFY----YEIMNSPERFVRYYMHC 201 (202)
Q Consensus 129 GDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~P---irLgLaLN~SVF~----yEi~~~~~~A~~i~~~~ 201 (202)
|.-+.=+..+..+.+..+..+.|..+|++|+++ .|.++ ..||.++.---++ -+-.++.++|+...+.|
T Consensus 43 G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA 117 (158)
T 1zu2_A 43 GGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA 117 (158)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence 334444555666666667788999999999865 45665 4566665322111 11235666776665544
No 154
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=24.31 E-value=91 Score=22.07 Aligned_cols=33 Identities=18% Similarity=0.279 Sum_probs=28.2
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L 40 (202)
+-+..++.+..+.|+|++.+.+.+++++.+|.-
T Consensus 66 ~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 98 (150)
T 4ga2_A 66 KAHRFLGLLYELEENTDKAVECYRRSVELNPTQ 98 (150)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC
Confidence 345678999999999999999999999987753
No 155
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=22.82 E-value=1.1e+02 Score=20.84 Aligned_cols=27 Identities=15% Similarity=0.228 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAK 35 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~ 35 (202)
+++-.|=-.+++|+|++.+.+.+..++
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 456666667888999999998888765
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=22.77 E-value=1.4e+02 Score=26.02 Aligned_cols=12 Identities=33% Similarity=0.468 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q 028895 150 NSMKAYETATTA 161 (202)
Q Consensus 150 ~a~~aY~~A~~~ 161 (202)
.|.+.|++|+++
T Consensus 24 ~A~~~~~~Al~~ 35 (477)
T 1wao_1 24 NAIKFYSQAIEL 35 (477)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 345555555443
No 157
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=22.45 E-value=1.1e+02 Score=28.29 Aligned_cols=54 Identities=15% Similarity=0.031 Sum_probs=36.1
Q ss_pred hhhcccchHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHhCC
Q 028895 136 AEFKFGDEKKEAAANSMKAYETATTAAEADLPPTHPIRLGLALNFSVFYYEIMNS 190 (202)
Q Consensus 136 aE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~pt~PirLgLaLN~SVF~yEi~~~ 190 (202)
+|....+.-.+.+++|.++|++|.+..++--..-+|--.-..||-| -.||.-||
T Consensus 436 ~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~a-k~yE~aGD 489 (526)
T 2wb7_A 436 AKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAA-KKHEMAGD 489 (526)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH-HHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHh-hhhhhccH
Confidence 3555566667889999999999999997533344554444455543 34777665
No 158
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=22.38 E-value=2.1e+02 Score=20.12 Aligned_cols=57 Identities=12% Similarity=0.014 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
-+..++.+..+.|+|++.+.+.++++..+|.-. +=...+..+|-. .+....|...+.
T Consensus 57 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-~~~~~lg~~~~~-~g~~~~A~~~~~ 113 (148)
T 2vgx_A 57 FFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP-RFPFHAAECLLQ-XGELAEAESGLF 113 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-HHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-hHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 345678899999999999999999998877643 333444555533 455555555553
No 159
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=22.00 E-value=2.2e+02 Score=22.84 Aligned_cols=16 Identities=19% Similarity=0.216 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHh
Q 028895 148 AANSMKAYETATTAAE 163 (202)
Q Consensus 148 ~~~a~~aY~~A~~~a~ 163 (202)
++.|.+.|..++..+.
T Consensus 188 ~~~a~~~Y~~~v~~~n 203 (305)
T 2efl_A 188 AEDSKADYSSILQKFN 203 (305)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3556677777766653
No 160
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=21.98 E-value=1.5e+02 Score=23.51 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=25.9
Q ss_pred HhHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 028895 8 ENFVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (202)
Q Consensus 8 e~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L 40 (202)
+-...+|.+..+.|||++.+....+++..+|..
T Consensus 220 ~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 220 ALATQLALQLHQVGRNEEALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence 345677888888889999888888888877655
No 161
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=21.82 E-value=1.9e+02 Score=19.60 Aligned_cols=56 Identities=21% Similarity=0.216 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHH
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILS 67 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~ 67 (202)
+..++.+..+.|+|++.+...++++...+.- ..-...+..+|-. .+....+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~A~~~~~ 66 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFD-VDVALHLGIAYVK-TGAVDRGTELLE 66 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC-HHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccC-hHHHHHHHHHHHH-cCCHHHHHHHHH
Confidence 4467888888999999999998888765542 3333344444432 344445555543
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=21.79 E-value=1.7e+02 Score=23.04 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=7.3
Q ss_pred HhCChHHHHHhhhh
Q 028895 187 IMNSPERFVRYYMH 200 (202)
Q Consensus 187 i~~~~~~A~~i~~~ 200 (202)
-+|+.++|....+.
T Consensus 84 ~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 84 EMESYDEAIANLQR 97 (281)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHH
Confidence 45555555555443
No 163
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=20.86 E-value=1.3e+02 Score=21.32 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=17.8
Q ss_pred HHHHHHH-HHHhCCH--HHHHHHHHHHhhcCC
Q 028895 10 FVYVAKL-AEQAERY--DEMVDAMKNVAKLDV 38 (202)
Q Consensus 10 li~~Akl-aeqaeRy--~dm~~~mk~~i~~~~ 38 (202)
+..+|.+ ..+.|+| ++.+.++++++..+|
T Consensus 81 ~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p 112 (177)
T 2e2e_A 81 YAALATVLYYQASQHMTAQTRAMIDKALALDS 112 (177)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC
Confidence 3445555 5566776 777777777665543
No 164
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=20.81 E-value=3.2e+02 Score=21.78 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhcCCCC
Q 028895 10 FVYVAKLAEQAERYDEMVDAMKNVAKLDVEL 40 (202)
Q Consensus 10 li~~AklaeqaeRy~dm~~~mk~~i~~~~~L 40 (202)
+..++.+..+.|++++.+....++++.+|+.
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 134 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNPDL 134 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4455666666666666666666666555543
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=20.08 E-value=2.1e+02 Score=19.30 Aligned_cols=58 Identities=14% Similarity=0.106 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhCCHHHHHHHHHHHhhcCCCCCHHHHHHHHhhhhhhhchhhhHHHHHHh
Q 028895 9 NFVYVAKLAEQAERYDEMVDAMKNVAKLDVELTVEERNLLSVGYKNVIGARRASWRILSS 68 (202)
Q Consensus 9 ~li~~AklaeqaeRy~dm~~~mk~~i~~~~~L~~eERnLlsvayKn~i~~~R~s~R~l~~ 68 (202)
-+..+|.+..+.|+|++.+.+.++++..++.. ..-...+..+|.. .+....|...+..
T Consensus 49 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~a~~~~~-~~~~~~A~~~~~~ 106 (166)
T 1a17_A 49 YYGNRSLAYLRTECYGYALGDATRAIELDKKY-IKGYYRRAASNMA-LGKFRAALRDYET 106 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHHHHH-hccHHHHHHHHHH
Confidence 45678888899999999999999999876643 4445555555544 4556666666643
Done!