BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028897
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VK5|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
           At3g22680
 pdb|2Q3T|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
           Gene Product From Arabidopsis Thaliana At3g22680
          Length = 157

 Score =  184 bits (466), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 102/122 (83%)

Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           + ++GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL  S+KQLY QPLHYLTN+ L+
Sbjct: 32  VADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQ 91

Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           +WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H+A LW SDPM++ FID
Sbjct: 92  RWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFID 151

Query: 182 SI 183
            I
Sbjct: 152 PI 153


>pdb|3GAN|A Chain A, Crystal Structure Of Gene Product From Arabidopsis
           Thaliana At3g22680 With Bound Suramin
          Length = 157

 Score =  174 bits (440), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 79/122 (64%), Positives = 97/122 (79%)

Query: 62  LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
           + ++GSL RRAE YQ+Y KQ+PIPT R S+IPFTSWVGL  S KQLY QPLHYLTN+ L+
Sbjct: 32  VADEGSLLRRAEXYQDYXKQVPIPTNRGSLIPFTSWVGLSISXKQLYGQPLHYLTNVLLQ 91

Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
           +WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT  H H A LW SDP ++ FID
Sbjct: 92  RWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHXALLWRSDPXYHSFID 151

Query: 182 SI 183
            I
Sbjct: 152 PI 153


>pdb|3HGW|C Chain C, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
           Pyruvate Lyase I87t Mutant
 pdb|3HGW|D Chain D, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
           Pyruvate Lyase I87t Mutant
 pdb|3HGW|A Chain A, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
           Pyruvate Lyase I87t Mutant
 pdb|3HGW|B Chain B, Apo Structure Of Pseudomonas Aeruginosa Isochorismate-
           Pyruvate Lyase I87t Mutant
          Length = 101

 Score = 28.9 bits (63), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 5/87 (5%)

Query: 46  ELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTS-WV---GLG 101
           ++   ++ I     Q L  +    + A  ++     +P P + ++++P  + W    GL 
Sbjct: 12  DIREAIDRIDLDIVQALGRRMDYVKAASRFKASEAAIPAPERVAAMLPERARWAEENGLD 71

Query: 102 NS-IKQLYEQPLHYLTNIHLKQWDQLR 127
              ++ L+ Q +H+ T   +K W Q R
Sbjct: 72  APFVEGLFAQIIHWYTAEQIKYWRQTR 98


>pdb|3Q7M|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
           Spacegroup I222
 pdb|3Q7N|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
           Spacegroup P212121
          Length = 376

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 66  GSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSW-VGLGNSIKQLYEQ 110
           GSLF   E   + +K  P+PT  +   P T+W   +G+ I   Y  
Sbjct: 4   GSLFNSEE---DVVKXSPLPTVENQFTPTTAWSTSVGSGIGNFYSN 46


>pdb|3Q7O|A Chain A, The Crystal Structure Of Bamb From The Bam Complex In
           Spacegroup P213
          Length = 376

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 66  GSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSW-VGLGNSIKQLYEQ 110
           GSLF   E   + +K  P+PT  +   P T+W   +G+ I   Y  
Sbjct: 4   GSLFNSEE---DVVKMSPLPTVENQFTPTTAWSTSVGSGIGNFYSN 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.133    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,997,527
Number of Sequences: 62578
Number of extensions: 181200
Number of successful extensions: 400
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 9
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)