BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028897
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LUJ3|RDM1_ARATH Protein RDM1 OS=Arabidopsis thaliana GN=RDM1 PE=1 SV=1
Length = 163
Score = 185 bits (469), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 82/122 (67%), Positives = 102/122 (83%)
Query: 62 LNEKGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLK 121
+ ++GSL RRAEMYQ+YMKQ+PIPT R S+IPFTSWVGL S+KQLY QPLHYLTN+ L+
Sbjct: 38 VADEGSLLRRAEMYQDYMKQVPIPTNRGSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQ 97
Query: 122 QWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAKLWLSDPMHYVFID 181
+WDQ RFGT+ E + LDS++HP KAEAT+WL+EE+HRLT H H+A LW SDPM++ FID
Sbjct: 98 RWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMALLWRSDPMYHSFID 157
Query: 182 SI 183
I
Sbjct: 158 PI 159
>sp|Q6GIN2|UVRA_STAAR UvrABC system protein A OS=Staphylococcus aureus (strain MRSA252)
GN=uvrA PE=3 SV=1
Length = 948
Score = 33.5 bits (75), Expect = 0.93, Method: Composition-based stats.
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 44 TKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPT------QRSSIIPFTSW 97
T++ T E + + +E S + R EM +YM +LP T R ++ +
Sbjct: 367 TRKRTMVFEGVVPNISRRFHESPSEYTR-EMMSKYMTELPCETCHGKRLSREALSVYVGG 425
Query: 98 VGLGNSIKQLYEQPLHYLTNIHLKQWDQ 125
+ +G ++ Q L+Y NI+L + DQ
Sbjct: 426 LNIGEVVEYSISQALNYYKNINLSEQDQ 453
>sp|Q4J8J7|SYL2_SULAC Leucine--tRNA ligase 2 OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=leuS2 PE=3 SV=2
Length = 942
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 41 DQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEY--MKQLPIPTQRSSIIPFTSWV 98
D K+LT +V I+ K G+ + + E +E + LP+P R I F +
Sbjct: 353 DNDLKKLTEQVYRIEYNK--GVMIDITKLVKPEYVEELKPLVNLPVPAARQKITEFITQK 410
Query: 99 GLGNSIKQLYEQPLH 113
GLG I ++ +P++
Sbjct: 411 GLGRKIYEIMNRPVY 425
>sp|Q89A95|DPO3X_BUCBP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaX PE=3 SV=1
Length = 370
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 127 RFGTEDEHKPLDSLVH-PCKAEATVWLIEEVHRLTS-CHHHLAKLWLSDPMHYVFIDSIT 184
R ED + LD++ + P K ++LI+EVH L+ + L K P H FI + T
Sbjct: 98 RTKVEDMKELLDNIRYLPSKGRFKIYLIDEVHMLSRYSFNFLLKNIEEPPQHIKFILATT 157
Query: 185 LNSPKSPDSTKSSSPQ 200
N K PD+ S Q
Sbjct: 158 -NLEKIPDTILSRCLQ 172
>sp|Q12674|ATC8_YEAST Probable phospholipid-transporting ATPase DNF3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=DNF3 PE=1
SV=1
Length = 1656
Score = 31.6 bits (70), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 114 YLTNIHLKQWDQLRFG-----TEDEHKPLDSLVHPCKAEATVWLIE 154
Y +IH K+W++LR G T+D+ P D L+ C E + +E
Sbjct: 290 YNVHIHQKKWEKLRVGDFVLLTQDDWVPADLLLLTCDGENSECFVE 335
>sp|O33768|SYL2_SULSO Leucine--tRNA ligase 2 OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=leuS2 PE=3 SV=2
Length = 944
Score = 30.8 bits (68), Expect = 6.0, Method: Composition-based stats.
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 36 NDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQL---PIPTQRSSII 92
N+ D+ K+LT V + K ++ G+L R E Y+ +K L P+P R I
Sbjct: 351 NNPKSDEDLKKLTEYVYRTEYNKGVLRSDLGNLIR--EEYRNELKSLGGLPVPKGRELIT 408
Query: 93 PFTSWVGLGNSIKQLYEQPLH 113
F GLG I ++ +P++
Sbjct: 409 NFLISKGLGRKIFEVMNKPVY 429
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.131 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,682,888
Number of Sequences: 539616
Number of extensions: 3132957
Number of successful extensions: 7965
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7953
Number of HSP's gapped (non-prelim): 26
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 58 (26.9 bits)