Query 028897
Match_columns 202
No_of_seqs 21 out of 23
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 06:25:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vk5_A Expressed protein; stru 100.0 3.6E-96 1E-100 597.0 11.1 152 12-186 2-156 (157)
2 1m1l_A Suppressor of fused; ge 46.3 2.6 8.9E-05 35.2 -1.3 39 94-141 5-46 (236)
3 1bby_A RAP30; average structur 28.8 33 0.0011 24.2 2.3 28 102-129 26-53 (69)
4 2k2b_A Degenerin MEC-4; membra 27.8 18 0.00063 27.9 0.9 17 101-117 17-33 (111)
5 1ofu_X SULA, hypothetical prot 22.1 39 0.0013 25.1 1.8 28 139-166 61-88 (119)
6 1oft_A SULA, hypothetical prot 20.5 42 0.0015 26.7 1.7 28 139-166 103-130 (161)
7 2ib1_A Death domain containing 16.0 1.3E+02 0.0045 21.3 3.3 33 95-130 19-58 (91)
8 1dp7_P MHC class II transcript 15.6 70 0.0024 22.7 1.8 41 65-110 13-53 (76)
9 3hhc_A Interleukin-28B; interf 13.8 68 0.0023 27.1 1.5 19 103-121 114-132 (196)
10 2d3o_1 Trigger factor, TF; rib 11.7 3.3E+02 0.011 19.3 4.5 46 71-123 27-74 (112)
No 1
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=100.00 E-value=3.6e-96 Score=596.98 Aligned_cols=152 Identities=59% Similarity=1.020 Sum_probs=120.4
Q ss_pred ccccCCCCCC---CCCCCCCCCCCCCCCccccCCCCccchHHHHHHHHhhhcCCcccchHHHHHHHHHHhcccCCCCCCC
Q 028897 12 DVISSDDSAS---DGDADNGLDGRQSSNDMTIDQPTKELTSEVENIQKQKCQGLNEKGSLFRRAEMYQEYMKQLPIPTQR 88 (202)
Q Consensus 12 DviSSd~SsS---d~Ea~nGk~~~~~~n~~~l~~s~k~~~~~~~~~~k~k~~g~~es~~lirrAemYQ~yMkqiPIP~~r 88 (202)
||||||+|+| |+|++|| +||||||.|++++| ++|||||||||+||||||||++|
T Consensus 2 dv~sS~~s~Ssd~d~e~~~g--------~~~i~~s~k~~~~e---------------~~liRrAEmYQ~YMK~iPIP~~~ 58 (157)
T 1vk5_A 2 ELRPSGDSGSSDVDAEISDG--------FSPLDTSHRDVADE---------------GSLLRRAEMYQDYMKQVPIPTNR 58 (157)
T ss_dssp ---------------------------------------------------------CTTHHHHHHHHHHHHTSCCCSSC
T ss_pred CcccCCCCccCCccccccCC--------cccCCCcccccCcc---------------hhhhhHHHHHHHHHHhCCCCccc
Confidence 7889999887 8899988 59999999999999 99999999999999999999999
Q ss_pred CccccccchhhhhHHHHHHhcCchHHHHHHHHhhhhhhccCCCCCCCCCccccCccchhhhHHHHHHHHhhccchHHHHH
Q 028897 89 SSIIPFTSWVGLGNSIKQLYEQPLHYLTNIHLKQWDQLRFGTEDEHKPLDSLVHPCKAEATVWLIEEVHRLTSCHHHLAK 168 (202)
Q Consensus 89 ~s~Ipf~sW~gLg~SiKqlYgQPLHYLTnilLkqWDq~RiGs~dE~kpLd~IIhP~kAEatIW~vEevHR~tsS~~hlA~ 168 (202)
|++|||+||+|||||||||||||||||||+|||||||+||||+||+||||+||||||||||||+||||||+||||+|||+
T Consensus 59 ~s~Ipf~sW~gL~~SiKQlY~QPLHYLTN~LLkqWDQ~RiGs~dE~kpLd~IIhP~kAeatIW~vEE~HR~tsS~~hla~ 138 (157)
T 1vk5_A 59 GSLIPFTSWVGLSISMKQLYGQPLHYLTNVLLQRWDQSRFGTDSEEQRLDSIIHPTKAEATIWLVEEIHRLTPSHLHMAL 138 (157)
T ss_dssp CSCCCCSSHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTTTCSSCCCCGGGTSCHHHHHHHHHHHHHHHHHSCCHHHHHH
T ss_pred CCcccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccccCchhhhccchhhhhHHHHHHHHHhhcCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCcccccccccCCC
Q 028897 169 LWLSDPMHYVFIDSITLN 186 (202)
Q Consensus 169 LW~~DPmy~~fiD~if~~ 186 (202)
||++|||||+|||+|||+
T Consensus 139 LW~sDPmyhafiD~ifp~ 156 (157)
T 1vk5_A 139 LWRSDPMYHSFIDPIFPE 156 (157)
T ss_dssp HHHTCTTGGGGSCCCCCC
T ss_pred HHhcCchhhhhcccCCCC
Confidence 999999999999999985
No 2
>1m1l_A Suppressor of fused; gene regulation, hedgehog signaling, signal transduction, signaling protein; 2.65A {Homo sapiens} SCOP: d.260.1.1
Probab=46.28 E-value=2.6 Score=35.17 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=30.9
Q ss_pred ccchhhhhHHHHHHhc-C--chHHHHHHHHhhhhhhccCCCCCCCCCcccc
Q 028897 94 FTSWVGLGNSIKQLYE-Q--PLHYLTNIHLKQWDQLRFGTEDEHKPLDSLV 141 (202)
Q Consensus 94 f~sW~gLg~SiKqlYg-Q--PLHYLTnilLkqWDq~RiGs~dE~kpLd~II 141 (202)
...|..+-..++++|+ | |+||-|.+ +- ++|-.| |||.|.
T Consensus 5 ~~g~~ai~~~~~~~y~~q~~p~~~~~~i--~~----~lGG~d---pLD~is 46 (236)
T 1m1l_A 5 PPGLHAIYGECRRLYPDQPNPLQVTAIV--KY----WLGGPD---PLDYVS 46 (236)
T ss_dssp CHHHHHHHHHHHHHCTTCSSCEEEECSS--CG----GGTCSC---SCSEEE
T ss_pred chhHHHHHHHHHHHcCCCCCCceecccc--ce----ecCCCC---CCCcEE
Confidence 3479999999999996 6 99999954 43 588855 898874
No 3
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=28.83 E-value=33 Score=24.25 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=20.2
Q ss_pred HHHHHHhcCchHHHHHHHHhhhhhhccC
Q 028897 102 NSIKQLYEQPLHYLTNIHLKQWDQLRFG 129 (202)
Q Consensus 102 ~SiKqlYgQPLHYLTnilLkqWDq~RiG 129 (202)
+.+++.-+||..||.-+|-+==+..|-|
T Consensus 26 K~L~~~t~QP~~yLKeiL~~Ia~~~k~g 53 (69)
T 1bby_A 26 KDLVDITKQPVVYLKEILKEIGVQNVKG 53 (69)
T ss_dssp HHHHHHCCSCHHHHHHHHHHHCCCBCCT
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHcCC
Confidence 4567788999999999986654444444
No 4
>2k2b_A Degenerin MEC-4; membrane associated, minimal constraint, detergent solubilized, glycoprotein, ION transport, ionic channel; NMR {Caenorhabditis elegans}
Probab=27.83 E-value=18 Score=27.94 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=14.0
Q ss_pred hHHHHHHhcCchHHHHH
Q 028897 101 GNSIKQLYEQPLHYLTN 117 (202)
Q Consensus 101 g~SiKqlYgQPLHYLTn 117 (202)
..-|.|+||-||-||..
T Consensus 17 seymsqvygdplaylqe 33 (111)
T 2k2b_A 17 SEYMSQVYGDPLAYLQE 33 (111)
T ss_dssp HHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHhcChHHHHHH
Confidence 35688999999999954
No 5
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=22.05 E-value=39 Score=25.15 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=22.5
Q ss_pred cccCccchhhhHHHHHHHHhhccchHHH
Q 028897 139 SLVHPCKAEATVWLIEEVHRLTSCHHHL 166 (202)
Q Consensus 139 ~IIhP~kAEatIW~vEevHR~tsS~~hl 166 (202)
.+|+|.+.+.++|.+||.=|.-+++-=|
T Consensus 61 l~v~~~~~~d~lwa~EqaLrsg~~~aVl 88 (119)
T 1ofu_X 61 LLLQAKDNAAALALSCEALRLGRSHTVV 88 (119)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCcHHHHHHHHHHHhcCCccEEE
Confidence 3689999999999999998876665433
No 6
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=20.49 E-value=42 Score=26.73 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=22.8
Q ss_pred cccCccchhhhHHHHHHHHhhccchHHH
Q 028897 139 SLVHPCKAEATVWLIEEVHRLTSCHHHL 166 (202)
Q Consensus 139 ~IIhP~kAEatIW~vEevHR~tsS~~hl 166 (202)
-+|++.+.+.++|.+||.=|..+++-=|
T Consensus 103 l~v~~~~~~daLwa~EqALrsG~~~aVl 130 (161)
T 1oft_A 103 LLLQAKDNAAALALSCEALRLGRSHTVV 130 (161)
T ss_dssp EEECCSSTTHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCChHHHHHHHHHHHhcCCccEEE
Confidence 3689999999999999998877665433
No 7
>2ib1_A Death domain containing membrane protein nradd; apoptosis, NOGO, FADD; NMR {Mus musculus}
Probab=15.97 E-value=1.3e+02 Score=21.33 Aligned_cols=33 Identities=15% Similarity=0.431 Sum_probs=20.0
Q ss_pred cchhhhhHHH-------HHHhcCchHHHHHHHHhhhhhhccCC
Q 028897 95 TSWVGLGNSI-------KQLYEQPLHYLTNIHLKQWDQLRFGT 130 (202)
Q Consensus 95 ~sW~gLg~Si-------KqlYgQPLHYLTnilLkqWDq~RiGs 130 (202)
-.|..||+-+ +..-..+-. |..||+.|- .|-|.
T Consensus 19 ~dW~~LA~~Lg~~~~~I~~i~~~~~~--~~~lL~~W~-~r~g~ 58 (91)
T 2ib1_A 19 KGWQELAGHLGYQAEAVETMACDQMP--AYTLLRNWA-AQEGN 58 (91)
T ss_dssp STHHHHHHHHTCCHHHHHHHTTSSCH--HHHHHHHTT-SSSSS
T ss_pred ccHHHHHHHcCCCHHHHHHHHhcCcH--HHHHHHHHH-hccCC
Confidence 4799998863 222222222 899999994 44443
No 8
>1dp7_P MHC class II transcription factor HRFX1; winged helix, protein- DNA conovel mode of DNA recognition, transcription/DNA complex; HET: DNA BRU; 1.50A {Synthetic} SCOP: a.4.5.20
Probab=15.62 E-value=70 Score=22.70 Aligned_cols=41 Identities=17% Similarity=0.447 Sum_probs=29.1
Q ss_pred cchHHHHHHHHHHhcccCCCCCCCCccccccchhhhhHHHHHHhcC
Q 028897 65 KGSLFRRAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYEQ 110 (202)
Q Consensus 65 s~~lirrAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYgQ 110 (202)
.++-+.|.++|.+|+..=- ...+.| .+...+||.|+++|..
T Consensus 13 ~~~svpR~~vY~~Y~~~C~----~~~~~p-l~~a~FGK~ir~~FP~ 53 (76)
T 1dp7_P 13 EGVSLPRSTLYNHYLLHSQ----EQKLEP-VNAASFGKLIRSVFMG 53 (76)
T ss_dssp EEEEEEHHHHHHHHHHHHH----HTTCCC-CCHHHHHHHHHHHSTT
T ss_pred CCceechHHHHHHHHHHHH----hcCCcc-CCHHHHHHHHHHHCCC
Confidence 4667889999999984210 012233 6889999999999865
No 9
>3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral defense, cytokine, secreted; 2.80A {Homo sapiens}
Probab=13.80 E-value=68 Score=27.13 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=15.5
Q ss_pred HHHHHhcCchHHHHHHHHh
Q 028897 103 SIKQLYEQPLHYLTNIHLK 121 (202)
Q Consensus 103 SiKqlYgQPLHYLTnilLk 121 (202)
++-...+||||.|.+|.-+
T Consensus 114 ~L~~vl~QPL~tL~hIhs~ 132 (196)
T 3hhc_A 114 ALGDVLDQPLHTLHHILSQ 132 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhChHHHHHHHHHH
Confidence 5667789999999999743
No 10
>2d3o_1 Trigger factor, TF; ribosome, nascent chain, protein folding, SRP; 3.35A {Deinococcus radiodurans} PDB: 2aar_7
Probab=11.73 E-value=3.3e+02 Score=19.34 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=34.3
Q ss_pred HHHHHHHhcccCCCCCCCCccccccchhhhhHHHHHHhc-Cc-hHHHHHHHHhhh
Q 028897 71 RAEMYQEYMKQLPIPTQRSSIIPFTSWVGLGNSIKQLYE-QP-LHYLTNIHLKQW 123 (202)
Q Consensus 71 rAemYQ~yMkqiPIP~~r~s~Ipf~sW~gLg~SiKqlYg-QP-LHYLTnilLkqW 123 (202)
..+.|+++-+++.||-=|-.-.|. .-|+|.|| .- +--..|.|+.+-
T Consensus 27 ~~~~~~~~~k~~~ipGFRkGKvP~-------~vi~k~yG~~~v~~ea~~~~i~~~ 74 (112)
T 2d3o_1 27 YDQVWAGLARDVRVPGFRPGKAPR-------KVIENRVGKGYVESQVRDRLLETH 74 (112)
T ss_dssp HHHHHHHHHTTSCBTTBCTTCCCS-------TTHHHHTTTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCcCCCCCCH-------HHHHHHhCHHHHHHHHHHHHHHHH
Confidence 345899999999999999666773 34899999 43 445677777654
Done!