BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028899
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9CPW7|ZMAT2_MOUSE Zinc finger matrin-type protein 2 OS=Mus musculus GN=Zmat2 PE=2
SV=1
Length = 199
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 144/200 (72%), Gaps = 11/200 (5%)
Query: 7 AGVDNT-FRRKFDREEYLERARER---EREEADGRSKSKAKGPPVQRKPLKHRDYVVDLE 62
+G N FRRK+D++EY + A +R ERE+ DG+ PV+R+ L+HRDY VDLE
Sbjct: 5 SGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ-----PVKRELLRHRDYKVDLE 59
Query: 63 SRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 122
S+LGKT V+T P S+ GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L
Sbjct: 60 SKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTL 119
Query: 123 DQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEET 182
DQV++RFE + K+K+ + D +ER +K+ EEEE+ + +++K+++KK +A +
Sbjct: 120 DQVKKRFE-VNKKKMEEKQKDYDFEER-MKELREEEEKAKAYKKEKQKEKKRRAEEDLTF 177
Query: 183 EMDPDIAAMMGFGSFHSSKK 202
E D ++AA+MGF F S+KK
Sbjct: 178 EEDDEMAAVMGFSGFGSTKK 197
>sp|Q96NC0|ZMAT2_HUMAN Zinc finger matrin-type protein 2 OS=Homo sapiens GN=ZMAT2 PE=1
SV=1
Length = 199
Score = 169 bits (427), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 102/200 (51%), Positives = 144/200 (72%), Gaps = 11/200 (5%)
Query: 7 AGVDNT-FRRKFDREEYLERARER---EREEADGRSKSKAKGPPVQRKPLKHRDYVVDLE 62
+G N FRRK+D++EY + A +R ERE+ DG+ PV+R+ L+HRDY VDLE
Sbjct: 5 SGTKNLDFRRKWDKDEYEKLAEKRLTEEREKKDGKPVQ-----PVKRELLRHRDYKVDLE 59
Query: 63 SRLGKTQVVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASL 122
S+LGKT V+T P S+ GYYC+VC+CVVKDS N+LDHINGKKHQR LGMSMRVER++L
Sbjct: 60 SKLGKTIVITKTTPQSEMGGYYCNVCDCVVKDSINFLDHINGKKHQRNLGMSMRVERSTL 119
Query: 123 DQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEKAAVEEET 182
DQV++RFE + K+K+ + D +ER +K+ EEEE+ + +++K+++KK +A +
Sbjct: 120 DQVKKRFE-VNKKKMEEKQKDYDFEER-MKELREEEEKAKAYKKEKQKEKKRRAEEDLTF 177
Query: 183 EMDPDIAAMMGFGSFHSSKK 202
E D ++AA+MGF F S+KK
Sbjct: 178 EEDDEMAAVMGFSGFGSTKK 197
>sp|P34670|YO14_CAEEL Putative zinc finger protein ZK686.4 OS=Caenorhabditis elegans
GN=ZK686.4 PE=2 SV=1
Length = 407
Score = 132 bits (333), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 84/203 (41%), Positives = 130/203 (64%), Gaps = 16/203 (7%)
Query: 14 RRKFDREEYLERARER---EREEADGR-SKSKAKGPPVQRKPLKHRDYVVDLESRLGKTQ 69
RR +D +EY A++R E+E D R K K P V+R+ L+ R+Y VDL+S++GK+
Sbjct: 207 RRTWDEKEYSLAAQQRLLDEKEAEDIRLGKKKKDEPKVKREMLQAREYKVDLDSKVGKSV 266
Query: 70 VVTPIAPLSQQAGYYCSVCECVVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRERF 129
V+T P ++ G+YC VC+CVVKDS N+LDHINGK HQR +GMSM+ +++++ VRERF
Sbjct: 267 VITKATPSAETGGFYCDVCDCVVKDSINFLDHINGKNHQRNIGMSMKTKKSTVADVRERF 326
Query: 130 ELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQ-RREKKKEKKKEK---------AAVE 179
+L+K +K Q E++++ +EEE R +++KK + +K K E
Sbjct: 327 KLMKDKKEREKKEAQ--VEQLLEDVQEEEARMADFKKDKKTDNRKRKRDTRKDEEEDDDE 384
Query: 180 EETEMDPDIAAMMGFGSFHSSKK 202
+++ +DP+I AMMGF F +SK+
Sbjct: 385 DDSGLDPEIRAMMGFSGFSTSKR 407
>sp|Q09776|SNU23_SCHPO U4/U6.U5 small nuclear ribonucleoprotein component snu23
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snu23 PE=3 SV=4
Length = 173
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/148 (33%), Positives = 85/148 (57%), Gaps = 10/148 (6%)
Query: 59 VDLESRLGKTQVVTPIAPLSQQ---AGYYCSVCECVVKDSANYLDHINGKKHQRALGMSM 115
+D E + KT ++ A + ++ AG+YC C KDS ++LDH+N +H R +
Sbjct: 28 IDFEKDVNKTTILPAGASVGRRGRGAGWYCEACNETYKDSLSWLDHLNSTQHLRKTRTVI 87
Query: 116 RVERASLDQVRERFELLKKRKV-PGSFSEQ-DLDERIIKQQEEEEERRRQRREKKKEKKK 173
+RA+L++V+ER E +++ + P SE+ L ER+ + +E E ++ +R++KK K+K
Sbjct: 88 IEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERYHQELEAKKLRRKQKKVNKEK 147
Query: 174 EKA-AVEEETEMDPDIAAMMGFGSFHSS 200
V E TE+ AA+MG SF S+
Sbjct: 148 NSPRLVGENTEL----AAIMGISSFGST 171
>sp|Q12368|SNU23_YEAST 23 kDa U4/U6.U5 small nuclear ribonucleoprotein component
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=SNU23 PE=1 SV=1
Length = 194
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 99/209 (47%), Gaps = 30/209 (14%)
Query: 9 VDNTFRRKFDREEYLERAREREREEADGRSKSKAKGPPVQRKPLKHR----DYVVDLESR 64
+ N RR +DREEY E+AR D RS KA P++ + LK + D+++ +
Sbjct: 1 MSNFGRRTWDREEYAEQARSG----YDDRS-LKATLTPIELQALKSKYTNYDHLIKGSLK 55
Query: 65 -LGKTQVVTPIAPLS-----QQAGYYCSVCECVVKDSANYLDHINGKKH----QRALGMS 114
L K ++ LS ++ G+YC +C KD+ Y+DH+N K H +
Sbjct: 56 DLNKRKLTANTESLSSFKRGKKFGFYCDICNLTFKDTLQYIDHLNHKVHAIKFENLFDEP 115
Query: 115 MRVERASLDQV-RERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKK 173
+ ++ D V +E FEL +L + ++ + E + +R+R +K
Sbjct: 116 LIIDIRDNDDVPQEEFEL----------CYHNLIKDFVEVRSMETQSKRKRLLDTDVEKA 165
Query: 174 EKAAVEEETEMDPDIAAMMGFGSFHSSKK 202
+K A + E + ++ MMGF +F +SKK
Sbjct: 166 KKVATKPSIESESKVSQMMGFSNFATSKK 194
>sp|P51950|MAT1_MARGL CDK-activating kinase assembly factor MAT1 OS=Marthasterias
glacialis PE=1 SV=1
Length = 324
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 91 VVKDSANYLDHINGKKHQRALGMSMRVERASLDQVRE--RFELLKKRKVPGSFSEQDLDE 148
+KD +YL+ I A G + + +DQ R+ R ++K R S +Q E
Sbjct: 92 ALKDYNDYLEEIETIIFNLANGTELEATKRKVDQYRKNNRESIMKNRSKQSS--DQAYLE 149
Query: 149 RIIKQQEEEEERRRQR-----REKKKEKKKEKAAVEEE 181
+++Q+ E+EE ++Q+ R+ K +KK++K A+ +E
Sbjct: 150 ALLQQENEDEEEKKQQLQFMERQTKNQKKRDKEALIDE 187
>sp|Q8IDX6|RBP2A_PLAF7 Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum
(isolate 3D7) GN=PF13_0198 PE=3 SV=1
Length = 3130
Score = 31.2 bits (69), Expect = 5.5, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 116 RVERASLDQVRERFELLKKRKVPGSFSEQDLDERIIKQQEEEEERRRQRREKKKEKKKEK 175
R+ER +Q+++ E LK+++ E+ L + ++ ++EEE +RQ +E+ + +K+E+
Sbjct: 2760 RLEREKQEQLQKE-EELKRQEQERLQKEEALKRQEQERLQKEEELKRQEQERLEREKQEQ 2818
Query: 176 AAVEEE 181
EEE
Sbjct: 2819 LQKEEE 2824
>sp|Q9BY12|SCAPE_HUMAN S phase cyclin A-associated protein in the endoplasmic reticulum
OS=Homo sapiens GN=SCAPER PE=1 SV=1
Length = 1399
Score = 30.8 bits (68), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 85 CSVCECVVKDSANYLDHINGKKHQRAL 111
CS+C ++ H+ G+KHQ+A+
Sbjct: 793 CSLCNVLISSEVYLFSHVKGRKHQQAV 819
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.129 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,614,255
Number of Sequences: 539616
Number of extensions: 3358945
Number of successful extensions: 70981
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 850
Number of HSP's that attempted gapping in prelim test: 44488
Number of HSP's gapped (non-prelim): 15503
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)