BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028900
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2QT3|A Chain A, Crystal Structure Of N-Isopropylammelide
           Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
           Adp Complexed With Zn
 pdb|2QT3|B Chain B, Crystal Structure Of N-Isopropylammelide
           Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
           Adp Complexed With Zn
          Length = 403

 Score = 28.5 bits (62), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 87  RLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI-RARRLCMVKEGRL 131
           R+ G+ + + ++      L  L++ S   A I +A+RLC++K GR+
Sbjct: 349 RVLGIEKNYGIEVGKKADLVVLNSLSPQWAIIDQAKRLCVIKNGRI 394


>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
           Complex With Staurosporine
 pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
           Complex With Staurosporine
          Length = 310

 Score = 28.1 bits (61), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 92  SQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEI 151
           SQR S  K   + ++YLH+ + +  ++ +   C+V+E +       N +  D  L  L +
Sbjct: 108 SQRVSFAKDIASGMAYLHSMNIIHRDLNSHN-CLVRENK-------NVVVADFGLARLMV 159

Query: 152 DWSGGPETMEEI 163
           D    PE +  +
Sbjct: 160 DEKTQPEGLRSL 171


>pdb|3K7L|A Chain A, Structures Of Two Elapid Snake Venom Metalloproteases With
           Distinct Activities Highlight The Disulfide Patterns In
           The D Domain Of Adamalysin Family Proteins
          Length = 422

 Score = 28.1 bits (61), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 13/92 (14%)

Query: 108 LHTWSKL-----QAEIRARRLCMVKEGRLRQKKLENQLKLDAKLNSLEIDWSGGPETMEE 162
           L  WS +     Q+++RA    +   G  R+KKL  + + D       ID++G P  +  
Sbjct: 64  LEIWSNINEINVQSDVRAT---LNLFGEWREKKLLPRKRNDNAQLLTGIDFNGTPVGLAY 120

Query: 163 ILSRINQREKAAV-----KRERAMAYAFSHQV 189
           I S  N +  AAV      R R +A   +H++
Sbjct: 121 IGSICNPKTSAAVVQDYSSRTRMVAITMAHEM 152


>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
 pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
          Length = 1080

 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 21/138 (15%)

Query: 48  FAIGSTLGMPVEDVAAIRIQTAFRAYKARKTFRR-LKGTIRLQGVSQRHSVQKQATTTLS 106
           + + +   M + +  +I IQ   R + AR  + R LK  + LQ   +R   +++      
Sbjct: 852 YLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRE------ 905

Query: 107 YLHTWSKLQAEIRA----RRLCMVKEGRLRQ--KKLENQLK----LDAKLNSLEIDWSGG 156
                 KL+ E R+    ++L +  E ++ Q  +K++ Q K    L  K+N+LEI +S  
Sbjct: 906 ----LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTE 961

Query: 157 PETMEEILSRINQREKAA 174
            E +   + R+   E+ A
Sbjct: 962 TEKLRSDVERLRMSEEEA 979


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.131    0.380 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,408,862
Number of Sequences: 62578
Number of extensions: 134111
Number of successful extensions: 415
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 413
Number of HSP's gapped (non-prelim): 11
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)