Query 028900
Match_columns 202
No_of_seqs 201 out of 520
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 04:18:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028900.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028900hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00612 IQ: IQ calmodulin-bin 98.1 3.6E-06 7.7E-11 47.6 3.3 21 60-80 1-21 (21)
2 smart00015 IQ Short calmodulin 97.7 5E-05 1.1E-09 44.8 2.9 22 59-80 2-23 (26)
3 KOG0160 Myosin class V heavy c 97.6 0.0002 4.3E-09 72.7 8.1 63 58-124 671-734 (862)
4 KOG0520 Uncharacterized conser 96.7 0.0017 3.6E-08 66.7 4.3 71 59-129 809-887 (975)
5 KOG0160 Myosin class V heavy c 96.3 0.012 2.7E-07 60.0 7.8 65 58-125 694-758 (862)
6 PTZ00014 myosin-A; Provisional 96.2 0.0064 1.4E-07 61.8 5.3 41 61-101 778-819 (821)
7 PF00612 IQ: IQ calmodulin-bin 94.2 0.047 1E-06 30.5 2.3 19 83-101 2-20 (21)
8 COG5022 Myosin heavy chain [Cy 93.9 0.13 2.9E-06 55.0 6.6 65 59-124 744-809 (1463)
9 KOG2128 Ras GTPase-activating 92.8 0.31 6.6E-06 52.2 7.2 67 59-125 564-639 (1401)
10 smart00015 IQ Short calmodulin 90.8 0.22 4.8E-06 29.0 2.1 19 83-101 4-22 (26)
11 KOG0164 Myosin class I heavy c 89.4 1 2.2E-05 46.1 6.7 25 61-85 697-721 (1001)
12 KOG0520 Uncharacterized conser 88.0 1.5 3.3E-05 45.7 7.1 63 62-124 835-930 (975)
13 KOG4427 E3 ubiquitin protein l 83.9 1.2 2.5E-05 45.9 3.8 24 57-80 27-50 (1096)
14 PTZ00014 myosin-A; Provisional 83.8 2.9 6.3E-05 43.0 6.7 38 84-124 779-816 (821)
15 KOG0377 Protein serine/threoni 75.1 4 8.7E-05 39.9 4.2 35 57-91 14-48 (631)
16 KOG0942 E3 ubiquitin protein l 74.6 2.3 4.9E-05 44.3 2.6 26 57-82 26-51 (1001)
17 KOG0163 Myosin class VI heavy 73.4 20 0.00043 37.5 8.7 30 59-88 812-842 (1259)
18 KOG2128 Ras GTPase-activating 71.3 7.3 0.00016 42.2 5.4 59 65-126 540-610 (1401)
19 KOG0162 Myosin class I heavy c 62.0 7.3 0.00016 40.3 3.1 38 61-101 697-735 (1106)
20 KOG0161 Myosin class II heavy 61.8 13 0.00028 41.9 5.1 36 86-121 777-812 (1930)
21 KOG0161 Myosin class II heavy 56.2 14 0.00031 41.5 4.4 41 60-100 773-817 (1930)
22 PF08763 Ca_chan_IQ: Voltage g 52.1 18 0.00039 23.3 2.7 21 59-79 8-28 (35)
23 PF09692 Arb1: Argonaute siRNA 43.8 33 0.00071 32.7 4.2 20 65-84 48-67 (396)
24 KOG0165 Microtubule-associated 41.6 41 0.00089 35.1 4.7 23 58-80 941-963 (1023)
25 PF03832 WSK: WSK motif; Inte 39.6 16 0.00034 22.9 0.9 19 3-21 5-25 (31)
26 PF15261 DUF4591: Domain of un 38.8 20 0.00043 29.2 1.6 15 172-186 57-71 (134)
27 COG5022 Myosin heavy chain [Cy 32.4 1.9E+02 0.0042 32.2 8.0 63 59-122 792-856 (1463)
28 PF15157 IQ-like: IQ-like 30.2 48 0.001 25.7 2.4 22 59-80 46-67 (97)
29 KOG0942 E3 ubiquitin protein l 22.2 89 0.0019 33.1 3.4 30 77-106 23-53 (1001)
No 1
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=98.11 E-value=3.6e-06 Score=47.58 Aligned_cols=21 Identities=48% Similarity=0.680 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 028900 60 DVAAIRIQTAFRAYKARKTFR 80 (202)
Q Consensus 60 e~AAi~IQsafRGylARr~l~ 80 (202)
..|||.||+.||||++|+.|+
T Consensus 1 ~~aai~iQ~~~R~~~~Rk~~k 21 (21)
T PF00612_consen 1 RKAAIIIQSYWRGYLARKRYK 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcC
Confidence 368999999999999999884
No 2
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=97.65 E-value=5e-05 Score=44.77 Aligned_cols=22 Identities=50% Similarity=0.662 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH
Q 028900 59 EDVAAIRIQTAFRAYKARKTFR 80 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~ 80 (202)
.+.||+.||+.||||++|+.|.
T Consensus 2 ~~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 2 LTRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 5689999999999999999984
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=97.59 E-value=0.0002 Score=72.71 Aligned_cols=63 Identities=27% Similarity=0.256 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (202)
Q Consensus 58 ree~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R 124 (202)
....+++.||..||||+.|+.|..++ +++.+|+.+||.++|+.. . ...+++.+|..+|+...|
T Consensus 671 vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~~~---~-~~~aai~~q~~~r~~~~r 734 (862)
T KOG0160|consen 671 VLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARRET---E-REAAAIGIQKECRSYLNR 734 (862)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhh---H-HHHHHHHhHHHHHHHHHH
Confidence 34567888999999999999999665 788899999999999821 1 344555555555554443
No 4
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=96.69 E-value=0.0017 Score=66.74 Aligned_cols=71 Identities=25% Similarity=0.367 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhhhhhh
Q 028900 59 EDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTL-------SYLHTWSKLQAEIRARRLCMVKEG 129 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tl-------r~~~a~vkIQs~iRarr~Rm~~e~ 129 (202)
...||..||.-||||+.|+.+..++ -+|++|+.+||+.+|++|.... +.+.+|-++|+.+|++..+-..|.
T Consensus 809 ~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~ 887 (975)
T KOG0520|consen 809 DPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEE 887 (975)
T ss_pred chhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhc
Confidence 3468999999999999999999665 7999999999999999997322 236788889999999988766443
No 5
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=96.31 E-value=0.012 Score=60.04 Aligned_cols=65 Identities=20% Similarity=0.104 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900 58 VEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 58 ree~AAi~IQsafRGylARr~l~~lkgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm 125 (202)
..-.+++.||+.+||+++|+....-...+.+|..+|++..|+++ .....+++.+|+.+|+..+|.
T Consensus 694 ~~r~~~~~~Q~~~rG~~~r~~~~~~~aai~~q~~~r~~~~r~~y---~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 694 QLRSAVIIIQAYSRGVLARRETEREAAAIGIQKECRSYLNRRRY---RALIPASITIQSGVRAMLARN 758 (862)
T ss_pred HHHHHHHHHhhhhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcc
Confidence 45578999999999999998333445788899999999999998 444578999999999999987
No 6
>PTZ00014 myosin-A; Provisional
Probab=96.23 E-value=0.0064 Score=61.82 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHH-HHhHHHhhhhhhhhHHHHHH
Q 028900 61 VAAIRIQTAFRAYKARKTFRR-LKGTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 61 ~AAi~IQsafRGylARr~l~~-lkgiVrLQalvRG~~vRrq~ 101 (202)
..++.||+++|||++|+.|.. ..+++.+|+.+||+++++..
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~~ 819 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAEI 819 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368899999999999999995 55899999999999998753
No 7
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=94.21 E-value=0.047 Score=30.53 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=15.8
Q ss_pred HhHHHhhhhhhhhHHHHHH
Q 028900 83 KGTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 83 kgiVrLQalvRG~~vRrq~ 101 (202)
+++|.||+.+||+++|+++
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4678889999999998876
No 8
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=93.87 E-value=0.13 Score=55.03 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH-HHHhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~-~lkgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R 124 (202)
-...++.||+++||++.|+.|. .++.+..+|.+.+|..+++.+..-+. .....++|..++...-|
T Consensus 744 ~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~r 809 (1463)
T COG5022 744 LDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELK-WRLFIKLQPLLSLLGSR 809 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchH-HHhHHHhhHHhHHHhhH
Confidence 3468999999999999999998 78888888999999988876643332 35666777776655443
No 9
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=92.82 E-value=0.31 Score=52.19 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHhhhHHH---HHH-HH-HHHhHHHhhhhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhh
Q 028900 59 EDVAAIRIQTAFRAYKA---RKT-FR-RLKGTIRLQGVSQRHSVQKQATTTL----SYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 59 ee~AAi~IQsafRGylA---Rr~-l~-~lkgiVrLQalvRG~~vRrq~~~tl----r~~~a~vkIQs~iRarr~Rm 125 (202)
.....+.||++.|||+. +.. +. ..+.+|.+|++.||+++|+.+...+ .++.+.+.||+.+|.+..|-
T Consensus 564 ~~P~~~diq~~vr~~~~~~~~~~~~~~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~ 639 (1401)
T KOG2128|consen 564 QTPFVVDIQALVRGILQYIPRDVYLDSAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRK 639 (1401)
T ss_pred cCchHHHHHHHHHHHhhhchHHHHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccch
Confidence 45678999999999993 222 22 5668999999999999999997443 47999999999999998764
No 10
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=90.75 E-value=0.22 Score=29.00 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=16.4
Q ss_pred HhHHHhhhhhhhhHHHHHH
Q 028900 83 KGTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 83 kgiVrLQalvRG~~vRrq~ 101 (202)
+.++.||+.+||+.+|+.+
T Consensus 4 ~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 4 RAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4688899999999999887
No 11
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=89.36 E-value=1 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHhH
Q 028900 61 VAAIRIQTAFRAYKARKTFRRLKGT 85 (202)
Q Consensus 61 ~AAi~IQsafRGylARr~l~~lkgi 85 (202)
.-|+.||.++||+++|..|+.++.+
T Consensus 697 ~lvtllQK~~RG~~~R~ry~rmka~ 721 (1001)
T KOG0164|consen 697 SLVTLLQKAWRGWLARQRYRRMKAS 721 (1001)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999988753
No 12
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=87.95 E-value=1.5 Score=45.72 Aligned_cols=63 Identities=19% Similarity=0.219 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhHHHHHHHHHH-HhHH----------HhhhhhhhhHHHHHHH----------------------HHHHHH
Q 028900 62 AAIRIQTAFRAYKARKTFRRL-KGTI----------RLQGVSQRHSVQKQAT----------------------TTLSYL 108 (202)
Q Consensus 62 AAi~IQsafRGylARr~l~~l-kgiV----------rLQalvRG~~vRrq~~----------------------~tlr~~ 108 (202)
=+++||+++|||-.|+.|..+ .++- ++|...||+..|..+. ...+--
T Consensus 835 p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~~~~~~~r~~ 914 (975)
T KOG0520|consen 835 PIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQLRKQTEERLT 914 (975)
T ss_pred ccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999833 2311 4477888876665432 222336
Q ss_pred HHHHHHHHHHHHHHhh
Q 028900 109 HTWSKLQAEIRARRLC 124 (202)
Q Consensus 109 ~a~vkIQs~iRarr~R 124 (202)
+|+++||+.+|....+
T Consensus 915 ~A~~~VQsm~rs~~a~ 930 (975)
T KOG0520|consen 915 RAVVRVQSMFRSPKAQ 930 (975)
T ss_pred HHHHHHHHHhcCHHHH
Confidence 7999999999888766
No 13
>KOG4427 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.87 E-value=1.2 Score=45.91 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.8
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHH
Q 028900 57 PVEDVAAIRIQTAFRAYKARKTFR 80 (202)
Q Consensus 57 ~ree~AAi~IQsafRGylARr~l~ 80 (202)
.+.|.||+.||..+|||++|+.++
T Consensus 27 rrr~~aa~~iq~~lrsyl~Rkk~~ 50 (1096)
T KOG4427|consen 27 RRREAAALFIQRVLRSYLVRKKAQ 50 (1096)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999987
No 14
>PTZ00014 myosin-A; Provisional
Probab=83.80 E-value=2.9 Score=42.96 Aligned_cols=38 Identities=11% Similarity=0.176 Sum_probs=32.4
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (202)
Q Consensus 84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R 124 (202)
.++.+|+.+||+..|+.+. +..++++.||+.+|++..+
T Consensus 779 ~~~~iq~~~r~~~~r~~~~---~~~~~~~~iQ~~~R~~l~~ 816 (821)
T PTZ00014 779 LVSVLEALILKIKKKRKVR---KNIKSLVRIQAHLRRHLVI 816 (821)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4668899999999999983 3467999999999998865
No 15
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=75.15 E-value=4 Score=39.94 Aligned_cols=35 Identities=34% Similarity=0.246 Sum_probs=27.7
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHHHhHHHhhhh
Q 028900 57 PVEDVAAIRIQTAFRAYKARKTFRRLKGTIRLQGV 91 (202)
Q Consensus 57 ~ree~AAi~IQsafRGylARr~l~~lkgiVrLQal 91 (202)
.+--.||+.||.-||+|.||...+..-...-+|++
T Consensus 14 ~raikaAilIQkWYRr~~ARle~rrr~twqIFqsl 48 (631)
T KOG0377|consen 14 TRAIKAAILIQKWYRRYEARLEARRRCTWQIFQSL 48 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHH
Confidence 45568999999999999999987755555556765
No 16
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.59 E-value=2.3 Score=44.31 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=22.2
Q ss_pred chhHHHHHHHHHHhhhHHHHHHHHHH
Q 028900 57 PVEDVAAIRIQTAFRAYKARKTFRRL 82 (202)
Q Consensus 57 ~ree~AAi~IQsafRGylARr~l~~l 82 (202)
.++|.+|+.||+.+|||++|+....+
T Consensus 26 rk~e~~av~vQs~~Rg~~~r~~~~~~ 51 (1001)
T KOG0942|consen 26 RKQEKNAVKVQSFWRGFRVRHNQKLL 51 (1001)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999987733
No 17
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=73.37 E-value=20 Score=37.53 Aligned_cols=30 Identities=30% Similarity=0.497 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH-HHHhHHHh
Q 028900 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRL 88 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~-~lkgiVrL 88 (202)
...+.+++|+..||||+|+.++ .+-++.++
T Consensus 812 Rae~v~k~Q~~~Rg~L~rkr~~~ri~~~~K~ 842 (1259)
T KOG0163|consen 812 RAECVLKAQRIARGYLARKRHRPRIAGIRKI 842 (1259)
T ss_pred HHHHHHHHHHHHHHHHHHhhhchHHHHHHHH
Confidence 4567899999999999999988 55565544
No 18
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=71.32 E-value=7.3 Score=42.24 Aligned_cols=59 Identities=20% Similarity=0.148 Sum_probs=44.4
Q ss_pred HHHHHhhhHHHHHHHHHHHh--------HHHhhhhhhhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhh
Q 028900 65 RIQTAFRAYKARKTFRRLKG--------TIRLQGVSQRHSVQKQATTT----LSYLHTWSKLQAEIRARRLCMV 126 (202)
Q Consensus 65 ~IQsafRGylARr~l~~lkg--------iVrLQalvRG~~vRrq~~~t----lr~~~a~vkIQs~iRarr~Rm~ 126 (202)
+||+..|||..|..++.... ++.+|+++||.++ +... .....-++++|+..|+...|-.
T Consensus 540 ~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~---~~~~~~~~~~~~~evv~~qs~~R~~lsrk~ 610 (1401)
T KOG2128|consen 540 RIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQ---YIPRDVYLDSAKKEVVKFQSLTRGALSRKK 610 (1401)
T ss_pred hhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhh---hchHHHHHHHhhHHHHHHHHHHHHHHHHhh
Confidence 44999999999998874433 6678999999987 3222 2236678999999999988753
No 19
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=62.00 E-value=7.3 Score=40.31 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHH
Q 028900 61 VAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 61 ~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~ 101 (202)
-=|.+||.|||.|++||.|..+| -... ++-|..-||.+
T Consensus 697 ~~A~~IQkAWRrfv~rrky~k~ree~t~---ll~gKKeRRr~ 735 (1106)
T KOG0162|consen 697 GMARRIQKAWRRFVARRKYEKMREEATK---LLLGKKERRRY 735 (1106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcchHHHHHH
Confidence 36889999999999999998777 2322 34455555554
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=61.83 E-value=13 Score=41.92 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=17.3
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028900 86 IRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRAR 121 (202)
Q Consensus 86 VrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRar 121 (202)
+.+||.|||+++|+.+......+.++..||..+|.+
T Consensus 777 ~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~ 812 (1930)
T KOG0161|consen 777 TLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAY 812 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555444444444444455444444
No 21
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=56.18 E-value=14 Score=41.51 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH----HHhHHHhhhhhhhhHHHHH
Q 028900 60 DVAAIRIQTAFRAYKARKTFRR----LKGTIRLQGVSQRHSVQKQ 100 (202)
Q Consensus 60 e~AAi~IQsafRGylARr~l~~----lkgiVrLQalvRG~~vRrq 100 (202)
..-.+.+|+.+||||+|+.|.. +-++..||.=++-+..-+.
T Consensus 773 s~ii~~fQA~~Rg~l~r~~~~kr~~~~~ai~~iQ~N~r~~~~lr~ 817 (1930)
T KOG0161|consen 773 SQIITLFQAAIRGYLARKEFKKRLQQLDAIKVIQRNIRAYLKLRT 817 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3457889999999999999872 2367777876666544443
No 22
>PF08763 Ca_chan_IQ: Voltage gated calcium channel IQ domain; InterPro: IPR014873 Ca2+ ions are unique in that they not only carry charge but they are also the most widely used of diffusible second messengers. Voltage-dependent Ca2+ channels (VDCC) are a family of molecules that allow cells to couple electrical activity to intracellular Ca2+ signalling. The opening and closing of these channels by depolarizing stimuli, such as action potentials, allows Ca2+ ions to enter neurons down a steep electrochemical gradient, producing transient intracellular Ca2+ signals. Many of the processes that occur in neurons, including transmitter release, gene transcription and metabolism are controlled by Ca2+ influx occurring simultaneously at different cellular locales. The pore is formed by the alpha-1 subunit which incorporates the conduction pore, the voltage sensor and gating apparatus, and the known sites of channel regulation by second messengers, drugs, and toxins []. The activity of this pore is modulated by 4 tightly-coupled subunits: an intracellular beta subunit; a transmembrane gamma subunit; and a disulphide-linked complex of alpha-2 and delta subunits, which are proteolytically cleaved from the same gene product. Properties of the protein including gating voltage-dependence, G protein modulation and kinase susceptibility can be influenced by these subunits. Voltage-gated calcium channels are classified as T, L, N, P, Q and R, and are distinguished by their sensitivity to pharmacological blocks, single-channel conductance kinetics, and voltage-dependence. On the basis of their voltage activation properties, the voltage-gated calcium classes can be further divided into two broad groups: the low (T-type) and high (L, N, P, Q and R-type) threshold-activated channels. The voltage-gated calcium channel alpha 1 subunit contains an IQ domain, named for its isoleucine-glutamine (IQ) motif, which interacts with hydrophobic pockets of Ca2+/calmodulin []. The interaction regulates two self-regulatory calcium dependent feedback mechanisms, calcium dependent inactivation (CDI), and calcium-dependent facilitation (CDF). ; PDB: 3OXQ_F 2F3Z_B 3G43_E 2F3Y_B 2BE6_D 3DVM_B 3BXK_D 2VAY_B 3DVK_B 3BXL_B ....
Probab=52.05 E-value=18 Score=23.29 Aligned_cols=21 Identities=38% Similarity=0.450 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHhhhHHHHHHH
Q 028900 59 EDVAAIRIQTAFRAYKARKTF 79 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l 79 (202)
.--||..||-.||-|.+|+.-
T Consensus 8 K~YAt~lI~dyfr~~K~rk~~ 28 (35)
T PF08763_consen 8 KFYATLLIQDYFRQFKKRKEQ 28 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999863
No 23
>PF09692 Arb1: Argonaute siRNA chaperone (ARC) complex subunit Arb1; InterPro: IPR018606 Arb1 is required for histone H3 Lys9 (H3-K9) methylation, heterochromatin, assembly and siRNA generation in fission yeast [].
Probab=43.79 E-value=33 Score=32.66 Aligned_cols=20 Identities=25% Similarity=0.554 Sum_probs=17.2
Q ss_pred HHHHHhhhHHHHHHHHHHHh
Q 028900 65 RIQTAFRAYKARKTFRRLKG 84 (202)
Q Consensus 65 ~IQsafRGylARr~l~~lkg 84 (202)
+|++++-.|.+||++..-|.
T Consensus 48 RiE~~IQRyr~rRRl~~~R~ 67 (396)
T PF09692_consen 48 RIEECIQRYRARRRLDSERR 67 (396)
T ss_pred HHHHHHHHHHHhcCCChHHH
Confidence 99999999999998885554
No 24
>KOG0165 consensus Microtubule-associated protein Asp [Cytoskeleton]
Probab=41.56 E-value=41 Score=35.15 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHH
Q 028900 58 VEDVAAIRIQTAFRAYKARKTFR 80 (202)
Q Consensus 58 ree~AAi~IQsafRGylARr~l~ 80 (202)
..-.||+.||.+.|||.+|+.|+
T Consensus 941 nkKkaavviqkmirgfiarrkfq 963 (1023)
T KOG0165|consen 941 NKKKAAVVIQKMIRGFIARRKFQ 963 (1023)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999997
No 25
>PF03832 WSK: WSK motif; InterPro: IPR001573 Cell signalling mediated via GPCRs (G-protein-coupled receptors) involves the assembly of receptors, G-proteins, effectors and downstream elements into complexes that approach in design 'solid-state' signalling devices. Scaffold molecules, such as the AKAPs (A-kinase anchoring proteins), were discovered more than a decade ago and represent dynamic platforms, enabling multivalent signalling []. This family of functionally related proteins is classified on the basis of their ability to associate with the PKA holoenzyme inside cells. A shared property of most, if not all, AKAPs is the ability to form multivalent signal transduction complexes. Each anchoring protein contains at least two functional motifs []. The conserved PKA binding motif forms an amphipathic helix of 14-18 residues that interacts with hydrophobic determinants located in the extreme N terminus of the regulatory subunit dimmer. The subcellular address of each AKAP is encoded by a unique targeting motif. Gravin, an autoantigen recognised by serum from myasthenia gravis patients contains 3 repeats of this domain []. The WSK motif is short motif, named after three conserved residues found in the WXSXK motif, found in protein kinase A anchoring proteins. ; GO: 0006605 protein targeting, 0007165 signal transduction
Probab=39.59 E-value=16 Score=22.94 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=14.2
Q ss_pred Ccc--hhhhhhcccCCCCCCc
Q 028900 3 GDW--FKTFVCQKKVKVGSSK 21 (202)
Q Consensus 3 ~~W--~k~ii~~kk~~~~~sk 21 (202)
|-| ||.||..+|.+++.++
T Consensus 5 ~~W~S~KrlVt~rkrsks~~~ 25 (31)
T PF03832_consen 5 STWASFKRLVTPRKRSKSSKE 25 (31)
T ss_pred chhHHHHhhcCcccccccchh
Confidence 568 9999999886665433
No 26
>PF15261 DUF4591: Domain of unknown function (DUF4591)
Probab=38.75 E-value=20 Score=29.22 Aligned_cols=15 Identities=40% Similarity=0.643 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhh
Q 028900 172 KAAVKRERAMAYAFS 186 (202)
Q Consensus 172 EAa~KRERAlaYAfS 186 (202)
.+..+|++||+||=+
T Consensus 57 ~~~~~R~kALEYAK~ 71 (134)
T PF15261_consen 57 RAESKRKKALEYAKN 71 (134)
T ss_pred hhHHHHHHHHHHHHh
Confidence 456789999999954
No 27
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=32.36 E-value=1.9e+02 Score=32.16 Aligned_cols=63 Identities=19% Similarity=0.186 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH-HHHhHHHhh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028900 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQ-GVSQRHSVQKQATTTLSYLHTWSKLQAEIRARR 122 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~-~lkgiVrLQ-alvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr 122 (202)
-..++++||..+|.+.-|..++ .+..+..|| .+.+...++-.. .-...+.+.+-+|..+|...
T Consensus 792 ~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~-e~~~~~~~~~L~~~~~rs~~ 856 (1463)
T COG5022 792 KWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETE-EVEFSLKAEVLIQKFGRSLK 856 (1463)
T ss_pred HHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhh
Confidence 3456666666666666666666 444555666 333333333321 22223445555555555443
No 28
>PF15157 IQ-like: IQ-like
Probab=30.22 E-value=48 Score=25.67 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=18.0
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH
Q 028900 59 EDVAAIRIQTAFRAYKARKTFR 80 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~ 80 (202)
-|.-+..||.+||-|++|....
T Consensus 46 Leskvkiiqrawre~lq~qd~~ 67 (97)
T PF15157_consen 46 LESKVKIIQRAWREYLQRQDPL 67 (97)
T ss_pred hhHHHHHHHHHHHHHHHhcCCc
Confidence 4566888999999999997644
No 29
>KOG0942 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.20 E-value=89 Score=33.14 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=23.5
Q ss_pred HHHH-HHHhHHHhhhhhhhhHHHHHHHHHHH
Q 028900 77 KTFR-RLKGTIRLQGVSQRHSVQKQATTTLS 106 (202)
Q Consensus 77 r~l~-~lkgiVrLQalvRG~~vRrq~~~tlr 106 (202)
...+ ..++.|.+|+++||+.+|++.....+
T Consensus 23 ee~rk~e~~av~vQs~~Rg~~~r~~~~~~~R 53 (1001)
T KOG0942|consen 23 EEERKQEKNAVKVQSFWRGFRVRHNQKLLFR 53 (1001)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 3444 66789999999999999999865544
Done!