Query 028900
Match_columns 202
No_of_seqs 201 out of 520
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:30:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ix7_C Myosin-5A; contractIle 99.1 1.4E-10 4.6E-15 79.0 7.0 53 58-111 3-56 (58)
2 1n2d_C IQ2 and IQ3 motifs from 98.8 4.6E-09 1.6E-13 68.7 5.7 41 61-101 4-47 (48)
3 2dfs_A Myosin-5A; myosin-V, in 98.7 4.2E-08 1.4E-12 99.4 9.4 65 60-125 768-833 (1080)
4 2dfs_A Myosin-5A; myosin-V, in 98.7 3.1E-08 1.1E-12 100.3 8.2 67 58-125 814-881 (1080)
5 2l53_B CAM, voltage-gated sodi 98.1 1.4E-06 4.8E-11 53.6 2.9 25 56-80 2-26 (31)
6 2kxw_B Sodium channel protein 98.0 2.7E-06 9.4E-11 50.8 2.4 22 57-78 3-24 (27)
7 1n2d_C IQ2 and IQ3 motifs from 97.9 2.2E-05 7.4E-10 51.0 6.0 42 83-125 4-45 (48)
8 1wdc_A Scallop myosin; calcium 97.3 0.00049 1.7E-08 47.3 5.7 41 60-100 6-50 (64)
9 2ix7_C Myosin-5A; contractIle 97.2 0.00057 1.9E-08 45.9 5.5 41 83-126 6-46 (58)
10 2bl0_A Major plasmodial myosin 97.2 0.00045 1.5E-08 47.4 4.8 39 61-99 5-47 (63)
11 1wdc_A Scallop myosin; calcium 96.8 0.0026 8.9E-08 43.6 5.8 42 84-125 8-49 (64)
12 2bl0_A Major plasmodial myosin 96.8 0.0024 8.2E-08 43.7 5.5 42 84-125 6-47 (63)
13 1kk8_A Myosin heavy chain, str 96.8 0.0012 4.1E-08 65.6 5.5 42 60-101 779-824 (837)
14 3gn4_A Myosin-VI; unconvention 96.5 0.0026 8.8E-08 51.5 4.9 34 59-92 44-78 (148)
15 1i84_S Smooth muscle myosin he 95.7 0.0093 3.2E-07 60.7 5.3 41 61-101 793-837 (1184)
16 4dck_A Sodium channel protein 93.6 0.049 1.7E-06 44.7 3.5 26 56-81 126-151 (168)
17 1kk8_A Myosin heavy chain, str 93.1 0.21 7.1E-06 49.7 7.7 41 84-124 781-821 (837)
18 1w7j_A Myosin VA; motor protei 91.1 0.13 4.4E-06 50.9 3.5 25 60-84 768-792 (795)
19 1i84_S Smooth muscle myosin he 89.7 0.68 2.3E-05 47.1 7.5 41 84-124 794-834 (1184)
20 4anj_A Unconventional myosin-V 86.6 1 3.6E-05 45.8 6.5 42 59-101 774-816 (1052)
21 3gn4_A Myosin-VI; unconvention 69.2 8.9 0.00031 30.7 5.6 35 84-118 47-81 (148)
22 2f3y_B Voltage-dependent L-typ 39.0 20 0.00068 20.8 2.1 18 62-79 4-21 (26)
23 3dvk_B Voltage-dependent R-typ 36.9 14 0.00048 20.9 1.2 18 59-76 5-22 (23)
24 2be6_D Voltage-dependent L-typ 36.6 28 0.00096 21.8 2.7 21 59-79 10-30 (37)
25 3bxl_B CAM, voltage-dependent 31.8 34 0.0012 19.9 2.3 18 61-78 3-20 (26)
26 4anj_A Unconventional myosin-V 29.4 83 0.0029 32.1 6.2 42 81-125 773-814 (1052)
27 1wgn_A UBAP1, ubiquitin associ 26.3 24 0.00084 24.5 1.2 12 177-188 47-58 (63)
28 1m46_B IQ4, IQ4 motif from MYO 21.0 85 0.0029 17.8 2.6 20 82-101 3-22 (26)
No 1
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=99.12 E-value=1.4e-10 Score=79.03 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHH
Q 028900 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTW 111 (202)
Q Consensus 58 ree~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~ 111 (202)
..+.||+.||+.||||++|+.|..++ +++.||+.+||+.+|+.+. .++...++
T Consensus 3 ~~~~aai~IQ~~~Rg~~~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~~-~~r~~~aA 56 (58)
T 2ix7_C 3 KLRAACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQARCYAK-FLRRTKAA 56 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCc
Confidence 46789999999999999999999776 8999999999999999994 44444443
No 2
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=98.85 E-value=4.6e-09 Score=68.73 Aligned_cols=41 Identities=17% Similarity=0.206 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH---hHHHhhhhhhhhHHHHHH
Q 028900 61 VAAIRIQTAFRAYKARKTFRRLK---GTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 61 ~AAi~IQsafRGylARr~l~~lk---giVrLQalvRG~~vRrq~ 101 (202)
.||+.||+.+|||++|+.+..++ +++.||+.+||+.+|+.+
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~~~~~~~~aai~IQ~~~Rg~~~Rk~y 47 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRVNDEMKVNCATLLQAAYRGHSIRANV 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Confidence 58999999999999999998554 788999999999999875
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.68 E-value=4.2e-08 Score=99.35 Aligned_cols=65 Identities=26% Similarity=0.277 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900 60 DVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 60 e~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm 125 (202)
..||+.||++||||++|+.|..++ +++.||+.+||+.+|+.+ ..++...|++.||+.+|++.+|.
T Consensus 768 ~~aa~~IQa~~Rg~l~Rk~~~~~r~aai~IQ~~~Rg~~aR~~~-~~lr~~~AAi~IQs~~Rg~~~Rk 833 (1080)
T 2dfs_A 768 RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQARCYA-TFLRRTRAAIIIQKFQRMYVVRK 833 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcc-cccccchhHHHHHHHHhhHHHHH
Confidence 579999999999999999999665 889999999999999988 44566788888888888887764
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=98.67 E-value=3.1e-08 Score=100.31 Aligned_cols=67 Identities=25% Similarity=0.248 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900 58 VEDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 58 ree~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm 125 (202)
+++.||+.||+.||||++|+.|..++ +++.||+.+||+.+|+.+. .++...+++.||+.+|+...|.
T Consensus 814 r~~~AAi~IQs~~Rg~~~Rk~y~~lr~aai~IQs~~Rg~laRr~~~-~lr~~~aav~IQ~~~Rg~l~R~ 881 (1080)
T 2dfs_A 814 RRTRAAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQ-MMLREHKSIIIQKHVRGWLARV 881 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTTTHHHH
T ss_pred ccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888888888888888888555 7888899999999988874 3444456777777777666654
No 5
>2l53_B CAM, voltage-gated sodium channel type V alpha isoform variant; calmodulin, IQ motif, complex, Ca-binding protein; NMR {Homo sapiens}
Probab=98.13 E-value=1.4e-06 Score=53.62 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=22.0
Q ss_pred cchhHHHHHHHHHHhhhHHHHHHHH
Q 028900 56 MPVEDVAAIRIQTAFRAYKARKTFR 80 (202)
Q Consensus 56 ~~ree~AAi~IQsafRGylARr~l~ 80 (202)
...||.||+.||.|||+||.|+.+.
T Consensus 2 rk~Ee~aA~vIQrA~R~yl~rr~~~ 26 (31)
T 2l53_B 2 PGSEEVSAMVIQRAFRRHLLQRSLK 26 (31)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3579999999999999999998754
No 6
>2kxw_B Sodium channel protein type 2 subunit alpha; action potential, amino acid motifs, animals, autism, biomol brain chemistry; NMR {Rattus norvegicus}
Probab=98.00 E-value=2.7e-06 Score=50.77 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHhhhHHHHHH
Q 028900 57 PVEDVAAIRIQTAFRAYKARKT 78 (202)
Q Consensus 57 ~ree~AAi~IQsafRGylARr~ 78 (202)
..||.||+.||.|||+||.|+.
T Consensus 3 k~Ee~aA~vIQrA~R~yl~~~~ 24 (27)
T 2kxw_B 3 KQEEVSAIVIQRAYRRYLLKQK 24 (27)
T ss_dssp CHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999865
No 7
>1n2d_C IQ2 and IQ3 motifs from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=97.93 E-value=2.2e-05 Score=50.96 Aligned_cols=42 Identities=14% Similarity=0.108 Sum_probs=36.5
Q ss_pred HhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900 83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 83 kgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm 125 (202)
.+++.||+.+||+++|+.+ ..++...+++.||+.+|+..+|.
T Consensus 4 ~a~i~iQ~~~Rg~l~R~~~-~~~~~~~aai~IQ~~~Rg~~~Rk 45 (48)
T 1n2d_C 4 QAIKYLQNNIKGFIIRQRV-NDEMKVNCATLLQAAYRGHSIRA 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHHHH
Confidence 4789999999999999999 44566679999999999998873
No 8
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=97.29 E-value=0.00049 Score=47.32 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH---H-hHHHhhhhhhhhHHHHH
Q 028900 60 DVAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQKQ 100 (202)
Q Consensus 60 e~AAi~IQsafRGylARr~l~~l---k-giVrLQalvRG~~vRrq 100 (202)
...++.||+.+|||++|+.|..+ + ++..+|.-+|++..++.
T Consensus 6 ~~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~~ 50 (64)
T 1wdc_A 6 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 50 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 34567777777777777776633 2 34455666666555544
No 9
>2ix7_C Myosin-5A; contractIle protein/metal binding, actin-binding, UBL conjugation, Ca2+ regulation, myosin, calcium, IQ motif, acetylation; 2.5A {Mus musculus}
Probab=97.24 E-value=0.00057 Score=45.87 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=35.2
Q ss_pred HhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 028900 83 KGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCMV 126 (202)
Q Consensus 83 kgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm~ 126 (202)
.++|.||+.+||+.+|+.+.. ...+++.||+.+||+.+|..
T Consensus 6 ~aai~IQ~~~Rg~~~Rk~~~~---~r~aai~IQ~~~Rg~~aR~~ 46 (58)
T 2ix7_C 6 AACIRIQKTIRGWLLRKRYLC---MQRAAITVQRYVRGYQARCY 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999943 33699999999999998853
No 10
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=97.20 E-value=0.00045 Score=47.42 Aligned_cols=39 Identities=23% Similarity=0.175 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH---H-hHHHhhhhhhhhHHHH
Q 028900 61 VAAIRIQTAFRAYKARKTFRRL---K-GTIRLQGVSQRHSVQK 99 (202)
Q Consensus 61 ~AAi~IQsafRGylARr~l~~l---k-giVrLQalvRG~~vRr 99 (202)
..++.||+.+|||++|+.|..+ + ++..+|.-+|+++.++
T Consensus 5 ~i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 5 EIVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3456666666666666666532 1 3334455555544444
No 11
>1wdc_A Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} PDB: 3jvt_A 3jtd_A 3pn7_A 3ts5_A 3tuy_A* 1scm_A
Probab=96.80 E-value=0.0026 Score=43.60 Aligned_cols=42 Identities=14% Similarity=-0.047 Sum_probs=37.5
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm 125 (202)
.++.+|+.+||+++|+.+...+....|+..||..+|++..+.
T Consensus 8 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~l~ 49 (64)
T 1wdc_A 8 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLR 49 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 578899999999999999888888889999999999988754
No 12
>2bl0_A Major plasmodial myosin heavy chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=96.80 E-value=0.0024 Score=43.71 Aligned_cols=42 Identities=14% Similarity=-0.045 Sum_probs=37.5
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm 125 (202)
.++.+|+.+||+++|+.+...+....|+..||..+|++..+.
T Consensus 6 i~t~~Qa~~RG~l~R~~~~k~~~~~~A~~iIQrn~R~~~~lr 47 (63)
T 2bl0_A 6 IVKVVQAAARGWVERKHFRQAREKSVSARIIQDNIRAYLEFK 47 (63)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 477899999999999999888888889999999999988764
No 13
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=96.79 E-value=0.0012 Score=65.59 Aligned_cols=42 Identities=21% Similarity=0.272 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH----HhHHHhhhhhhhhHHHHHH
Q 028900 60 DVAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 60 e~AAi~IQsafRGylARr~l~~l----kgiVrLQalvRG~~vRrq~ 101 (202)
..+|+.||+++|||++|+.|..+ .+++.||..+||+++|+..
T Consensus 779 ~~~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~r~~ 824 (837)
T 1kk8_A 779 SKIISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRNW 824 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcch
Confidence 34789999999999999999855 3678888888888888775
No 14
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=96.54 E-value=0.0026 Score=51.51 Aligned_cols=34 Identities=18% Similarity=0.488 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhhhHHHHHHHH-HHHhHHHhhhhh
Q 028900 59 EDVAAIRIQTAFRAYKARKTFR-RLKGTIRLQGVS 92 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~-~lkgiVrLQalv 92 (202)
...|+|.||+..||||+|+.++ .+.|++++.++.
T Consensus 44 R~~~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~ 78 (148)
T 3gn4_A 44 RAEACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLK 78 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4678999999999999999999 778888776654
No 15
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.71 E-value=0.0093 Score=60.66 Aligned_cols=41 Identities=22% Similarity=0.188 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHH----HhHHHhhhhhhhhHHHHHH
Q 028900 61 VAAIRIQTAFRAYKARKTFRRL----KGTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 61 ~AAi~IQsafRGylARr~l~~l----kgiVrLQalvRG~~vRrq~ 101 (202)
.+|+.||+.+|||++|+.|..+ .+++.+|..+||++.++.+
T Consensus 793 ~~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~k~~ 837 (1184)
T 1i84_S 793 DVIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHW 837 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5899999999999999999855 3788999999999998763
No 16
>4dck_A Sodium channel protein type 5 subunit alpha; IQ-motif, EF-hand, voltage-gated sodium channel regulation, CTD binds to FGF13 and CAM. CAM binds to Ca2+.; 2.20A {Homo sapiens} PDB: 2kbi_A
Probab=93.59 E-value=0.049 Score=44.71 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.5
Q ss_pred cchhHHHHHHHHHHhhhHHHHHHHHH
Q 028900 56 MPVEDVAAIRIQTAFRAYKARKTFRR 81 (202)
Q Consensus 56 ~~ree~AAi~IQsafRGylARr~l~~ 81 (202)
...++.||+.||.|||.|+.|+.+..
T Consensus 126 ~~~e~~aA~~IQra~R~~~~r~~~~~ 151 (168)
T 4dck_A 126 RKHEEVSAMVIQRAFRRHLLQRSLKH 151 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35789999999999999999988763
No 17
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=93.06 E-value=0.21 Score=49.68 Aligned_cols=41 Identities=15% Similarity=-0.035 Sum_probs=36.3
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (202)
Q Consensus 84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R 124 (202)
.++.+|+.+||+++|+.+...+....|++.||..+|++..|
T Consensus 781 ~~~~iQa~~Rg~l~R~~~~k~~~~r~a~~~IQ~~~R~~~~~ 821 (837)
T 1kk8_A 781 IISMFQAHIRGYLIRKAYKKLQDQRIGLSVIQRNIRKWLVL 821 (837)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999976666678999999999998876
No 18
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=91.06 E-value=0.13 Score=50.89 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHh
Q 028900 60 DVAAIRIQTAFRAYKARKTFRRLKG 84 (202)
Q Consensus 60 e~AAi~IQsafRGylARr~l~~lkg 84 (202)
..+|+.||+++|||++|+.|..++.
T Consensus 768 ~~~~~~iQ~~~Rg~l~R~~~~~~r~ 792 (795)
T 1w7j_A 768 RAACIRIQKTIRGWLMRKKYMRMRR 792 (795)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999997763
No 19
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=89.68 E-value=0.68 Score=47.11 Aligned_cols=41 Identities=15% Similarity=0.026 Sum_probs=36.2
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028900 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLC 124 (202)
Q Consensus 84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~R 124 (202)
.++.||+.+||+++|+.+...+....+++.||+.+|++..+
T Consensus 794 ~~~~iQ~~~Rg~l~R~~~~k~~~~~~a~~~iQ~~~r~~~~~ 834 (1184)
T 1i84_S 794 VIIAFQAQCRGYLARKAFAKRQQQLESIFCIQYNVRSFMNV 834 (1184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999999977666778999999999998765
No 20
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=86.60 E-value=1 Score=45.83 Aligned_cols=42 Identities=7% Similarity=0.176 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHhhhHHHHHHHHHHH-hHHHhhhhhhhhHHHHHH
Q 028900 59 EDVAAIRIQTAFRAYKARKTFRRLK-GTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l~~lk-giVrLQalvRG~~vRrq~ 101 (202)
-+.+|+.||. +|||++|+.|+.++ +++.+|.+.|+...|+..
T Consensus 774 ~~~~~~~iq~-~r~~l~r~~~~k~~~~a~~i~~~~r~~~~r~~~ 816 (1052)
T 4anj_A 774 PDHLAELVKR-VNHWLICSRWKKVQWCSLSVIKLKNKIKYRAEA 816 (1052)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3467787875 79999999999665 777888877776665553
No 21
>3gn4_A Myosin-VI; unconventional myosin, motility, lever ARM, 3-helix bundle, actin-binding, ATP-binding, calmodulin-binding, coiled coil; 2.70A {Sus scrofa}
Probab=69.19 E-value=8.9 Score=30.73 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=25.3
Q ss_pred hHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028900 84 GTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEI 118 (202)
Q Consensus 84 giVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~i 118 (202)
.++.+|..+||+++|+.+.+-...+.-+..+...+
T Consensus 47 ~~i~iQktvR~~L~rkkhkPRi~g~~kv~~L~~~~ 81 (148)
T 3gn4_A 47 ACIKMQKTIRMWLCKRRHKPRIDGLVKVGTLKKRL 81 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 46778999999999999987776655444444433
No 22
>2f3y_B Voltage-dependent L-type calcium channel alpha- 1C subunit; calmodulin, calmodulin complex, calcium channnel, CAV1.2, IQ domain; 1.45A {Homo sapiens} PDB: 2f3z_B 2vay_B
Probab=39.00 E-value=20 Score=20.83 Aligned_cols=18 Identities=44% Similarity=0.567 Sum_probs=15.3
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 028900 62 AAIRIQTAFRAYKARKTF 79 (202)
Q Consensus 62 AAi~IQsafRGylARr~l 79 (202)
|...||-.||.|..|+.-
T Consensus 4 at~LIqdyfRkfkkrke~ 21 (26)
T 2f3y_B 4 ATFLIQEYFRKFKKRKEQ 21 (26)
T ss_pred hhhhHHHHHHHHHHhHHh
Confidence 567899999999998864
No 23
>3dvk_B Voltage-dependent R-type calcium channel subunit; calmodulin, IQ domain, inactivation, facili calcium-dependent, voltage-gated; 2.30A {Rattus norvegicus} PDB: 3dvm_B
Probab=36.90 E-value=14 Score=20.91 Aligned_cols=18 Identities=22% Similarity=0.268 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHhhhHHHH
Q 028900 59 EDVAAIRIQTAFRAYKAR 76 (202)
Q Consensus 59 ee~AAi~IQsafRGylAR 76 (202)
.--|+..||-.||-+..|
T Consensus 5 KiYA~llI~d~~r~~k~r 22 (23)
T 3dvk_B 5 KIYAAMMIMDYYKQSKVK 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 346899999999988775
No 24
>2be6_D Voltage-dependent L-type calcium channel alpha-1C; calmodulin, IQ domain, inactivation, facili calcium-dependent, gating, voltage-gated; 2.00A {Homo sapiens}
Probab=36.63 E-value=28 Score=21.78 Aligned_cols=21 Identities=38% Similarity=0.417 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHhhhHHHHHHH
Q 028900 59 EDVAAIRIQTAFRAYKARKTF 79 (202)
Q Consensus 59 ee~AAi~IQsafRGylARr~l 79 (202)
.--|...||-.||-|..|+.-
T Consensus 10 KfYatfLIQdyFRkfkkrke~ 30 (37)
T 2be6_D 10 KFYATFLIQEYFRKFKKRKEQ 30 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345788999999999999874
No 25
>3bxl_B CAM, voltage-dependent R-type calcium channel subunit alpha-1E peptide; ION channel, calmodulin, IQ domain, facillitation, inactivation; 2.30A {Rattus norvegicus} PDB: 3bxk_B
Probab=31.84 E-value=34 Score=19.87 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 028900 61 VAAIRIQTAFRAYKARKT 78 (202)
Q Consensus 61 ~AAi~IQsafRGylARr~ 78 (202)
-||..|+-.||-+..|+.
T Consensus 3 YAa~mI~e~yrq~K~~r~ 20 (26)
T 3bxl_B 3 YAAMMIMDYYKQSKVKKQ 20 (26)
T ss_pred hHHHHHHHHHHHHHhhhh
Confidence 589999999999999886
No 26
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=29.36 E-value=83 Score=32.08 Aligned_cols=42 Identities=2% Similarity=-0.210 Sum_probs=28.9
Q ss_pred HHHhHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028900 81 RLKGTIRLQGVSQRHSVQKQATTTLSYLHTWSKLQAEIRARRLCM 125 (202)
Q Consensus 81 ~lkgiVrLQalvRG~~vRrq~~~tlr~~~a~vkIQs~iRarr~Rm 125 (202)
.+..++.+|..+||.++|+.+.. ...+++.||...|.++.|.
T Consensus 773 ~~~~~~~~iq~~r~~l~r~~~~k---~~~~a~~i~~~~r~~~~r~ 814 (1052)
T 4anj_A 773 DPDHLAELVKRVNHWLICSRWKK---VQWCSLSVIKLKNKIKYRA 814 (1052)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 34455566667899999999843 3457777777666666554
No 27
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=26.32 E-value=24 Score=24.48 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhh
Q 028900 177 RERAMAYAFSHQ 188 (202)
Q Consensus 177 RERAlaYAfShQ 188 (202)
=|||+.|-|||-
T Consensus 47 vErAaDWLFSH~ 58 (63)
T 1wgn_A 47 IEQILDYLFAHS 58 (63)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHhCC
Confidence 389999999994
No 28
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=20.97 E-value=85 Score=17.80 Aligned_cols=20 Identities=25% Similarity=0.243 Sum_probs=14.5
Q ss_pred HHhHHHhhhhhhhhHHHHHH
Q 028900 82 LKGTIRLQGVSQRHSVQKQA 101 (202)
Q Consensus 82 lkgiVrLQalvRG~~vRrq~ 101 (202)
|+.++.||.-+|..+-.+|+
T Consensus 3 lrtitnlqkkirkelkqrql 22 (26)
T 1m46_B 3 LRTITNLQKKIRKELKQRQL 22 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 56777788877777766664
Done!