BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028903
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
Reinhardtii Prolyl-4 Hydroxylase Type I
Length = 233
Score = 156 bits (395), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 102/134 (76%), Gaps = 5/134 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYL 202
++GGQR+ T+LMYL
Sbjct: 136 EHGGQRVVTMLMYL 149
>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
(Ser-Pro)5 Peptide Substrate
Length = 225
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 102/134 (76%), Gaps = 5/134 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 8 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 68 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 127
Query: 189 KNGGQRMATLLMYL 202
++GGQR+ T+LMYL
Sbjct: 128 EHGGQRVVTMLMYL 141
>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
Dicarboxylate
Length = 224
Score = 156 bits (394), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 102/134 (76%), Gaps = 5/134 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P MVKS+VVD+++G+S DS +RTS
Sbjct: 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 67 TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 126
Query: 189 KNGGQRMATLLMYL 202
++GGQR+ T+LMYL
Sbjct: 127 EHGGQRVVTMLMYL 140
>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii.
pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
Reinhardtii
Length = 233
Score = 149 bits (376), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 99/134 (73%), Gaps = 5/134 (3%)
Query: 74 EQW-TEIV--AWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS 130
E+W E+V +W PRAF+ NFLS EC+Y+++ A+P VKS+VVD+++G+S DS +RTS
Sbjct: 16 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75
Query: 131 SGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT-- 188
+GT+ +G+D +I IEKR+A T IP+E+ EG+QVLHY GQKY+ HYDYF D N
Sbjct: 76 TGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGP 135
Query: 189 KNGGQRMATLLMYL 202
++GGQR+ T L YL
Sbjct: 136 EHGGQRVVTXLXYL 149
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 9/121 (7%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKD-SRVRTSSGTFLKRGQDR 141
EP V N LS EC+ LI+L+K + +S K G S+D + +RTSSG FL +
Sbjct: 38 EPLIVVLGNVLSDEECDELIELSKSKLARS-----KVGSSRDVNDIRTSSGAFLD--DNE 90
Query: 142 IIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMY 201
+ IEKRI+ +P HGEG+ +L+YEV Q+Y AHYDYF E + R++TL+ Y
Sbjct: 91 LTAKIEKRISSIXNVPASHGEGLHILNYEVDQQYKAHYDYFA-EHSRSAANNRISTLVXY 149
Query: 202 L 202
L
Sbjct: 150 L 150
>pdb|1VL7|A Chain A, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
pdb|1VL7|B Chain B, Crystal Structure Of A Putative Heme Oxygenase (Alr5027)
From Nostoc Sp. Pcc 7120 At 1.50 A Resolution
Length = 157
Score = 27.7 bits (60), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 46 DDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIV 80
DD++ N + + RR +F+ +++ E + ++W ++V
Sbjct: 85 DDEAKTNQIFARRRLSFDCTATLIERESQKWNQVV 119
>pdb|3U4T|A Chain A, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b.
pdb|3U4T|B Chain B, Crystal Structure Of The C-Terminal Part Of The Tpr
Repeat-Containing Protein Q11ti6_cyth3 From Cytophaga
Hutchinsonii. Northeast Structural Genomics Consortium
Target Chr11b
Length = 272
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 146 IEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDY 181
+E R ADF F + E I+V + +KY++ Y Y
Sbjct: 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIY 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,738,095
Number of Sequences: 62578
Number of extensions: 219027
Number of successful extensions: 434
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 7
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)