BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028903
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 75/129 (58%), Gaps = 4/129 (3%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
EI+ ++P A ++ N + +E E + +LA P + ++TV +SKTG+ + + R S +LK
Sbjct: 319 EILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLKG 378
Query: 138 GQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE----FNTKNGGQ 193
D +I + +RI DFT + E +QV +Y +G YD H+D+ E F T N G
Sbjct: 379 DLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTGN 438
Query: 194 RMATLLMYL 202
R+AT+L Y+
Sbjct: 439 RIATVLFYM 447
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 80.1 bits (196), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 69/124 (55%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++TV D +TG+ ++ R S +L +D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF----LDEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 4/129 (3%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
EI + P A ++ + +S E + +LAKP + ++TV DS TG+ + R S +LK
Sbjct: 322 EIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLKE 381
Query: 138 GQDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDE----FNTKNGGQ 193
+ ++ + KRI T + ME E +Q+ +Y +G YD H+D+ E F + G
Sbjct: 382 WEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTGN 441
Query: 194 RMATLLMYL 202
R+AT+L Y+
Sbjct: 442 RIATVLFYM 450
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 74.7 bits (182), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L +D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF----LDEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF----LDEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF----LDEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR +H+ +S AE E + DLAKP + ++T+ + TG + R S +L ++ +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF----LDEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + LAKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 337 PHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 396
Query: 144 RGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT--KNGGQRMATLLMY 201
+ +R+ T + ++ E +QV +Y +G +Y+ H+D+ F++ K+ G R+AT L Y
Sbjct: 397 AKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATFLNY 456
Query: 202 L 202
+
Sbjct: 457 M 457
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 68.9 bits (167), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + ++AKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 336 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 395
Query: 144 RGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF----LDEFNTKNGGQRMATLL 199
+ +R+ T + ++ E +QV +Y VG +Y+ H+D+ D F G R+AT L
Sbjct: 396 ARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFL 455
Query: 200 MYL 202
Y+
Sbjct: 456 NYM 458
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 65/124 (52%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRI 142
+PR + + +S E E + +LAKP + ++TV D +TG+ + R S +L + +
Sbjct: 316 KPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPV 375
Query: 143 IRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATL 198
+ I RI D T + + E +QV +Y VG +Y+ H+D+ D F G R+AT
Sbjct: 376 VSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATW 435
Query: 199 LMYL 202
L Y+
Sbjct: 436 LFYM 439
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 66/123 (53%), Gaps = 4/123 (3%)
Query: 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRII 143
P Y++ +S E E + ++AKP + ++TV D KTG + R S ++L+ D ++
Sbjct: 338 PHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVV 397
Query: 144 RGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL----DEFNTKNGGQRMATLL 199
+ +R+ T + ++ E +QV +Y +G +Y+ H+D+ D F G R+AT L
Sbjct: 398 ARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVATFL 457
Query: 200 MYL 202
Y+
Sbjct: 458 NYM 460
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 73/130 (56%), Gaps = 7/130 (5%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ EP +YH+F+S AE + + LA+P++ +S V + + R+ S+ +LK
Sbjct: 340 EVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGEKQLPVEYRISKSA--WLKD 397
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDEFNT---KNGG 192
D ++ ++ RIA T + ++ + E +QV++Y +G Y+ H+D+ + N G
Sbjct: 398 TVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMNSG 457
Query: 193 QRMATLLMYL 202
R+AT ++YL
Sbjct: 458 NRVATFMIYL 467
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 71/130 (54%), Gaps = 7/130 (5%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ P +YH+F+S E + + +LA+P++ +S V + + R+ S +LK
Sbjct: 340 EVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGEKQLQVEYRI--SKSAWLKD 397
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDEFNT---KNGG 192
D ++ +++RIA T + ++ + E +QV++Y +G Y+ H+D+ + G
Sbjct: 398 TVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSG 457
Query: 193 QRMATLLMYL 202
R ATL++YL
Sbjct: 458 NRAATLMIYL 467
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 7/130 (5%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E+V P +YH+F+S E + + +LA+P++ +S V + + R+ S +LK
Sbjct: 338 EVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGEKQLQVEYRI--SKSAWLKD 395
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDEFNT---KNGG 192
D ++ ++ RIA T + ++ + E +QV++Y +G Y+ H+D+ + G
Sbjct: 396 TVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 455
Query: 193 QRMATLLMYL 202
R+AT ++YL
Sbjct: 456 NRVATFMIYL 465
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 59.3 bits (142), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 70/130 (53%), Gaps = 7/130 (5%)
Query: 78 EIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR 137
E++ EP +YH+F+S +E + + +LA+P++ +S V + + R+ S+ +LK
Sbjct: 340 EVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRSVVASGEKQLQVEYRISKSA--WLKD 397
Query: 138 GQDRIIRGIEKRIADFTFIPME--HGEGIQVLHYEVGQKYDAHYDYFLDEFNT---KNGG 192
D + + RIA T + + + E +QV++Y +G Y+ H+D+ + G
Sbjct: 398 TVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 457
Query: 193 QRMATLLMYL 202
R+AT ++YL
Sbjct: 458 NRVATFMIYL 467
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 53.1 bits (126), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 62/124 (50%), Gaps = 13/124 (10%)
Query: 85 RAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIR 144
+ FV +N ++ +C+ ++ A + DS+ D +R S ++ + + +++
Sbjct: 59 KPFVLNNLINPTKCQEIMQFAN-----GKLFDSQVLSGTDKNIRNSQQMWISKN-NPMVK 112
Query: 145 GIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLD------EFNTKNGGQRMATL 198
I + I +P ++ E +QV+ Y Q Y+ H+D D EF + GGQR+ T+
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEF-IERGGQRILTV 171
Query: 199 LMYL 202
L+YL
Sbjct: 172 LIYL 175
>sp|O31646|MANA1_BACSU Mannose-6-phosphate isomerase ManA OS=Bacillus subtilis (strain
168) GN=manA PE=3 SV=1
Length = 315
Score = 34.3 bits (77), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 93 LSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ-DRIIRGIEKRIA 151
L K EC Y+ID K D++ ++ + T ++RG+ D ++R ++ +
Sbjct: 111 LGKTECWYIIDCQK---------DAEIIYGHNATTKEELTTMIERGEWDELLRRVKVKPG 161
Query: 152 DFTFIPME--HGEGIQVLHYEVGQKYDAHY 179
DF ++P H G +L E Q D Y
Sbjct: 162 DFFYVPSGTVHAIGKGILALETQQNSDTTY 191
>sp|B7K3F6|DTD_CYAP8 D-tyrosyl-tRNA(Tyr) deacylase OS=Cyanothece sp. (strain PCC 8801)
GN=dtd PE=3 SV=1
Length = 147
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 40 FYIPIGDDDSPPNDLTSFRRRAFEKRSSIAEEKGEQWTEIVA-WEPRAFVYHNFLSKAEC 98
+ IG++D+ ++L R+ E R AEE G++W + V + V F +C
Sbjct: 29 LLVGIGNNDTE-SELDWMTRKCLELRLFPAEEGGDRWEKSVQEIQGELLVISQFTLYGDC 87
Query: 99 E-----YLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTF 134
D A P + K T+ D Q KDS ++ +G F
Sbjct: 88 RKGRRPSFSDSASPSIAK-TLYDQFVAQLKDSGLKVETGIF 127
>sp|Q29KK2|SNPF_DROPS Short neuropeptide F OS=Drosophila pseudoobscura pseudoobscura
GN=sNPF PE=3 SV=2
Length = 290
Score = 32.7 bits (73), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 19 LVLSMLFMLTIVLLMLLAMGIFYIPIGDDDSPPNDLTSF 57
L L M+ T L + G F++PI DD PPN TSF
Sbjct: 21 LNLLMMHQPTNAELSPVVQGEFFLPILPDDHPPNTDTSF 59
>sp|Q8BG58|P4HTM_MOUSE Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2
SV=1
Length = 503
Score = 32.0 bits (71), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 127 VRTSSGTFLKRGQD--RIIRGIEKRIADFTFIP---MEHGEGIQVLHYEVGQKYDAHYD 180
VR S T+L +G+ ++R I +R+ T + +E E +QV+ Y G Y AH D
Sbjct: 273 VRNSHHTWLHQGEGAHHVMRAIRQRVLRLTRLSPEIVEFSEPLQVVRYGEGGHYHAHVD 331
>sp|A4J103|RPOB_DESRM DNA-directed RNA polymerase subunit beta OS=Desulfotomaculum
reducens (strain MI-1) GN=rpoB PE=3 SV=1
Length = 1145
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 94 SKAEC-EYLIDLAKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
S EC E + A P VK +++ +TG+ K+ V TS GTF+ G +R+I
Sbjct: 75 SVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTSKGTFIINGAERVI 132
>sp|Q9NXG6|P4HTM_HUMAN Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1
SV=2
Length = 502
Score = 30.8 bits (68), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 127 VRTSSGTFLKRGQD--RIIRGIEKRIADFTFIP---MEHGEGIQVLHYEVGQKYDAHYD 180
VR S T+L +G+ I+R I +R+ T + +E E +QV+ Y G Y AH D
Sbjct: 272 VRNSHHTWLYQGEGAHHIMRAIRQRVLRLTRLSPEIVELSEPLQVVRYGEGGHYHAHVD 330
>sp|C1DIX4|Y4688_AZOVD UPF0229 protein Avin_46880 OS=Azotobacter vinelandii (strain DJ /
ATCC BAA-1303) GN=Avin_46880 PE=3 SV=1
Length = 424
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 112 STVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQV 166
S V+D + S V + FL+R +D I + +E+ ++ + MEHGE I +
Sbjct: 2 SYVIDRRLNGKNKSTV--NRQRFLRRYRDHIKKAVEEAVSRRSITDMEHGEQISI 54
>sp|Q3K5S7|Y5140_PSEPF UPF0229 protein Pfl01_5140 OS=Pseudomonas fluorescens (strain
Pf0-1) GN=Pfl01_5140 PE=3 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 STVVDSK-TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQV 166
S V+D + G++K + R FL+R +D I + +E+ ++ + MEHGE I +
Sbjct: 2 SYVIDRRLNGKNKSTVNRQR---FLRRYRDHIKKAVEEAVSRRSITDMEHGEQISI 54
>sp|Q4K4X0|Y5654_PSEF5 UPF0229 protein PFL_5654 OS=Pseudomonas fluorescens (strain Pf-5 /
ATCC BAA-477) GN=PFL_5654 PE=3 SV=1
Length = 424
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 STVVDSK-TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQV 166
S V+D + G++K + R FL+R +D I + +E+ ++ + MEHGE I +
Sbjct: 2 SYVIDRRLNGKNKSTVNRQR---FLRRYRDHIKKAVEEAVSRRSITDMEHGEQISI 54
>sp|Q48NU2|Y628_PSE14 UPF0229 protein PSPPH_0628 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=PSPPH_0628 PE=3 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 STVVDSK-TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQV 166
S V+D + G++K + R FL+R +D I + +E+ ++ + MEHGE I +
Sbjct: 2 SYVIDRRLNGKNKSTVNRQR---FLRRYRDHIKKAVEEAVSRRSITDMEHGEQISI 54
>sp|Q4ZMG0|Y4632_PSEU2 UPF0229 protein Psyr_4632 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=Psyr_4632 PE=3 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 STVVDSK-TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQV 166
S V+D + G++K + R FL+R +D I + +E+ ++ + MEHGE I +
Sbjct: 2 SYVIDRRLNGKNKSTVNRQR---FLRRYRDHIKKAVEEAVSRRSITDMEHGEQISI 54
>sp|B0TC48|RPOB_HELMI DNA-directed RNA polymerase subunit beta OS=Heliobacterium
modesticaldum (strain ATCC 51547 / Ice1) GN=rpoB PE=3
SV=1
Length = 1154
Score = 30.4 bits (67), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 94 SKAEC-EYLIDLAKPYMVKSTVVDSKTGQSKDSRV-------RTSSGTFLKRGQDRII 143
S EC E + A P VK +++ +TG+ K+ V T GTF+ G +R+I
Sbjct: 75 SVEECKERDVTFAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTDKGTFIINGAERVI 132
>sp|C3K332|Y5583_PSEFS UPF0229 protein PFLU_5583 OS=Pseudomonas fluorescens (strain SBW25)
GN=PFLU_5583 PE=3 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 STVVDSK-TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQV 166
S V+D + G++K + R FL+R +D I + +E+ ++ + MEHGE I +
Sbjct: 2 SYVIDRRLNGKNKSTVNRQR---FLRRYRDHIKKAVEEAVSRRSITDMEHGEQISI 54
>sp|Q88A51|Y546_PSESM UPF0229 protein PSPTO_0546 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=PSPTO_0546 PE=3 SV=1
Length = 423
Score = 30.4 bits (67), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 112 STVVDSK-TGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIPMEHGEGIQV 166
S V+D + G++K + R FL+R +D I + +E+ ++ + MEHGE I +
Sbjct: 2 SYVIDRRLNGKNKSTVNRQR---FLRRYRDHIKKAVEEAVSRRSITDMEHGEQISI 54
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,155,235
Number of Sequences: 539616
Number of extensions: 2897644
Number of successful extensions: 7589
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 7561
Number of HSP's gapped (non-prelim): 41
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)