Query 028903
Match_columns 202
No_of_seqs 189 out of 1118
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:21:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 2.5E-37 5.4E-42 272.5 15.2 132 71-202 41-172 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 3.7E-36 8E-41 262.6 12.6 194 8-202 10-220 (289)
3 smart00702 P4Hc Prolyl 4-hydro 99.9 4.9E-22 1.1E-26 161.1 11.8 115 84-202 1-119 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.2 2E-10 4.2E-15 97.8 9.5 109 86-202 2-121 (226)
5 PHA02813 hypothetical protein; 98.2 4.6E-06 1E-10 74.7 7.2 101 97-202 24-130 (354)
6 PHA02869 C4L/C10L-like gene fa 97.9 1.9E-05 4.2E-10 71.9 5.9 88 108-202 44-139 (418)
7 PF13661 2OG-FeII_Oxy_4: 2OG-F 97.0 0.00057 1.2E-08 47.6 3.1 39 160-202 9-47 (70)
8 COG3128 PiuC Uncharacterized i 96.1 0.009 2E-07 49.8 4.7 107 86-200 4-119 (229)
9 KOG3200 Uncharacterized conser 94.7 0.1 2.2E-06 43.3 6.3 96 79-182 7-108 (224)
10 PF13532 2OG-FeII_Oxy_2: 2OG-F 94.7 0.24 5.3E-06 40.0 8.6 93 86-182 2-117 (194)
11 TIGR02408 ectoine_ThpD ectoine 93.1 0.49 1.1E-05 41.1 8.0 120 79-202 24-152 (277)
12 KOG3710 EGL-Nine (EGLN) protei 92.8 0.56 1.2E-05 40.5 7.6 109 85-202 54-177 (280)
13 COG3751 EGL-9 Predicted prolin 92.6 0.39 8.5E-06 41.7 6.5 104 91-202 55-170 (252)
14 PF03336 Pox_C4_C10: Poxvirus 91.7 0.49 1.1E-05 42.7 6.2 77 122-202 35-115 (339)
15 KOG3959 2-Oxoglutarate- and ir 90.5 0.33 7.2E-06 42.0 3.8 93 84-181 72-173 (306)
16 PF03171 2OG-FeII_Oxy: 2OG-Fe( 90.0 0.17 3.8E-06 36.4 1.5 21 162-182 2-25 (98)
17 PF13640 2OG-FeII_Oxy_3: 2OG-F 89.5 0.16 3.4E-06 36.7 0.9 19 164-182 1-19 (100)
18 PHA02866 Hypothetical protein; 87.6 0.76 1.6E-05 41.0 4.1 84 108-202 31-117 (333)
19 PRK15401 alpha-ketoglutarate-d 82.2 7.6 0.00017 32.9 7.6 95 82-182 16-136 (213)
20 TIGR01762 chlorin-enz chlorina 76.3 22 0.00047 31.2 8.9 92 82-181 13-111 (288)
21 PF05721 PhyH: Phytanoyl-CoA d 75.9 3.6 7.8E-05 32.3 3.6 21 87-107 7-27 (211)
22 PF13677 MotB_plug: Membrane M 67.9 12 0.00026 25.0 4.2 24 1-24 1-24 (58)
23 PF03579 SHP: Small hydrophobi 67.1 12 0.00025 25.5 3.9 30 11-40 12-41 (64)
24 TIGR00568 alkb DNA alkylation 66.4 9.4 0.0002 31.1 4.1 41 141-181 74-114 (169)
25 COG1993 PII-like signaling pro 43.5 42 0.00091 25.6 3.9 74 98-171 25-108 (109)
26 COG2850 Uncharacterized conser 35.8 51 0.0011 30.4 3.9 40 141-184 101-141 (383)
27 PF15330 SIT: SHP2-interacting 32.2 48 0.001 25.1 2.7 21 23-43 3-23 (107)
28 PF12729 4HB_MCP_1: Four helix 31.6 41 0.00089 25.4 2.4 12 31-42 19-30 (181)
29 PF04835 Pox_A9: A9 protein co 30.8 1.3E+02 0.0029 20.0 4.3 22 26-47 30-51 (54)
30 PF07894 DUF1669: Protein of u 30.5 59 0.0013 28.8 3.4 19 89-107 47-65 (284)
31 PRK13726 conjugal transfer pil 29.0 75 0.0016 26.3 3.6 33 10-42 4-36 (188)
32 PF12955 DUF3844: Domain of un 29.0 61 0.0013 24.4 2.8 16 24-39 71-86 (103)
33 PF15183 MRAP: Melanocortin-2 28.7 82 0.0018 23.0 3.3 19 18-36 43-61 (90)
34 TIGR02223 ftsN cell division p 27.7 1.4E+02 0.003 26.6 5.3 14 92-105 113-126 (298)
35 cd08788 CARD_NOD2_2_CARD15 Cas 27.1 27 0.00058 25.3 0.5 15 89-103 25-39 (81)
36 COG3145 AlkB Alkylated DNA rep 27.0 66 0.0014 26.9 3.0 44 141-184 85-128 (194)
37 PF05546 She9_MDM33: She9 / Md 26.9 71 0.0015 27.1 3.1 24 12-35 148-172 (207)
38 PF14851 FAM176: FAM176 family 25.0 77 0.0017 25.6 2.9 24 21-44 22-45 (153)
39 PRK06925 flagellar motor prote 24.6 99 0.0021 26.1 3.7 6 1-6 1-6 (230)
40 PRK13254 cytochrome c-type bio 22.6 1E+02 0.0023 24.5 3.3 19 19-37 12-30 (148)
41 PF13544 N_methyl_2: Type IV p 22.2 1.1E+02 0.0023 17.8 2.4 19 7-25 6-24 (31)
42 COG4902 Uncharacterized protei 21.5 97 0.0021 25.2 2.8 16 33-48 16-31 (189)
43 PRK06666 fliM flagellar motor 21.5 1.5E+02 0.0032 26.3 4.4 17 90-106 3-19 (337)
44 TIGR01195 oadG_fam sodium pump 21.4 1.4E+02 0.003 21.3 3.4 22 20-41 12-33 (82)
45 PF07219 HemY_N: HemY protein 20.5 1.7E+02 0.0037 21.5 3.9 15 32-46 33-47 (108)
46 TIGR02258 2_5_ligase 2'-5' RNA 20.2 4.2E+02 0.0092 20.6 7.1 88 83-172 38-133 (179)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=2.5e-37 Score=272.53 Aligned_cols=132 Identities=52% Similarity=0.871 Sum_probs=123.0
Q ss_pred ccCCceEEEeeeCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHHHH
Q 028903 71 EKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRI 150 (202)
Q Consensus 71 ~~~~~kvE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri 150 (202)
...+.|+|+|||+|+|++||||||++||++||++|++++++|+|.++.+|+...+++|+|+++|++...++++++|++||
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri 120 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI 120 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence 34689999999999999999999999999999999999999999987777778889999999999988899999999999
Q ss_pred HhhhCCCCCCCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 151 ADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 151 ~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
++++|+|.++.|++||+||++||+|++|+|+|.+..+...+|+|++|+|+||
T Consensus 121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YL 172 (310)
T PLN00052 121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYL 172 (310)
T ss_pred HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEe
Confidence 9999999999999999999999999999999986544556899999999998
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-36 Score=262.56 Aligned_cols=194 Identities=43% Similarity=0.646 Sum_probs=154.3
Q ss_pred ccccccch--hHHHHHHHHHHHHHHHHHHHHhhhhcccc---CC-CCCCCCCCcchhhhhhcccc------ccccccCCc
Q 028903 8 RLQAKKWS--TLTLVLSMLFMLTIVLLMLLAMGIFYIPI---GD-DDSPPNDLTSFRRRAFEKRS------SIAEEKGEQ 75 (202)
Q Consensus 8 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 75 (202)
+..++++. ..+.++.++.....+...+..++.+..+. .+ ...-..+.....+....+.. + ....+|.
T Consensus 10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~-~~~~ap~ 88 (289)
T KOG1591|consen 10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGP-FLRLAPV 88 (289)
T ss_pred eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCc-ceeecch
Confidence 45555543 34667777777777888888888888876 22 11123333333332221111 2 3466999
Q ss_pred eEEEeeeCCCEEEEcCCCCHHHHHHHHHHhcCCcccceee-cCCCCcccccceeecceeEeCCCCcHHHHHHHHHHHhhh
Q 028903 76 WTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVV-DSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT 154 (202)
Q Consensus 76 kvE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~-~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~~t 154 (202)
|+|++||+|++++||||++++||++|+++|+++|.+++|. +..+|....+.+|+|+++|+..+.++++++|++||++++
T Consensus 89 k~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T 168 (289)
T KOG1591|consen 89 KLEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLT 168 (289)
T ss_pred hhhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999995 444566677789999999999988999999999999999
Q ss_pred CCCCCCCccceeeecCCCccccccccCCcc---c-cCCCCCCceeEEEEecC
Q 028903 155 FIPMEHGEGIQVLHYEVGQKYDAHYDYFLD---E-FNTKNGGQRMATLLMYL 202 (202)
Q Consensus 155 gl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~---~-~~~~~~g~R~aTvLiYL 202 (202)
|+|.+++|++||+||++||||++|+|+|.+ . .+...+|||++|+|+||
T Consensus 169 ~l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yl 220 (289)
T KOG1591|consen 169 GLPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYL 220 (289)
T ss_pred CCCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEe
Confidence 999999999999999999999999999953 2 24567899999999997
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.88 E-value=4.9e-22 Score=161.11 Aligned_cols=115 Identities=39% Similarity=0.625 Sum_probs=101.8
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeecceeEeCCCC-cHHHHHHHHHHHhhhCCC---CC
Q 028903 84 PRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQ-DRIIRGIEKRIADFTFIP---ME 159 (202)
Q Consensus 84 P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~-d~vv~~L~~Ri~~~tgl~---~~ 159 (202)
|.|+++|||||++||+.|++++++...++.+..+..+....+++|+|+.+|++..+ ++++++|.+|++++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 78999999999999999999999988888887654333367789999999998764 899999999999999998 78
Q ss_pred CCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 160 HGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 160 ~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
..|.+|+++|++|++|.+|+|++.... .++|.+|+++||
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yL 119 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYL 119 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEe
Confidence 899999999999999999999987542 279999999997
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.15 E-value=2e-10 Score=97.78 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=74.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC-CcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHHHHHhhh---------C
Q 028903 86 AFVYHNFLSKAECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT---------F 155 (202)
Q Consensus 86 I~l~~dfLs~eEc~~Li~lA~~-~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~~t---------g 155 (202)
|++++|+||++||+++++..+. .+....+.. | ....++|++...- . ++++.+.|.+++...+ .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~ta---G-~~~~~vKnN~ql~--~-d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVTA---G-AQAAQVKNNQQLP--E-DSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcCc---C-ccchhcccccccC--C-CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 6789999999999999998864 454433322 2 2355677766543 2 4677778888877654 2
Q ss_pred CCCCCCccceeeecCCCccccccccCCccccC-CCCCCceeEEEEecC
Q 028903 156 IPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFN-TKNGGQRMATLLMYL 202 (202)
Q Consensus 156 l~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~-~~~~g~R~aTvLiYL 202 (202)
+|... .++++.||++||+|++|.|....... ...+-+|..|+++||
T Consensus 75 lp~~i-~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyL 121 (226)
T PRK05467 75 LPRKI-HPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFL 121 (226)
T ss_pred ccccc-ccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEe
Confidence 33333 47899999999999999999754311 111124578999997
No 5
>PHA02813 hypothetical protein; Provisional
Probab=98.18 E-value=4.6e-06 Score=74.72 Aligned_cols=101 Identities=21% Similarity=0.327 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCcccceeecCCCC-cccccceeecceeEeCCCCcHHHHHHHHHHH-hhhCCC----CCCCccceeeecC
Q 028903 97 ECEYLIDLAKPYMVKSTVVDSKTG-QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIA-DFTFIP----MEHGEGIQVLHYE 170 (202)
Q Consensus 97 Ec~~Li~lA~~~l~~S~V~~~~~g-~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~-~~tgl~----~~~~E~lQv~rY~ 170 (202)
++-.+++...-.+..|.+.+..+| +....+.|+++++.++.. +.+.++|+.-+- ++.|.+ +.-.|.+.+++|.
T Consensus 24 ~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~ 102 (354)
T PHA02813 24 IIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYE 102 (354)
T ss_pred HHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEEC
Confidence 444444433446888999885544 567889999999999853 344444444333 233443 3568899999999
Q ss_pred CCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 171 VGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 171 ~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
+||+|++|.|+.... .......|+|+||
T Consensus 103 kGq~F~~H~Dg~~~r----~k~~s~~tLLLYL 130 (354)
T PHA02813 103 KGDFFNNHRDFIHFK----SKNCYCYHLVLYL 130 (354)
T ss_pred CCcccCcccCCceee----cCCceEEEEEEEE
Confidence 999999999975432 1123889999997
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=97.91 E-value=1.9e-05 Score=71.87 Aligned_cols=88 Identities=15% Similarity=0.231 Sum_probs=65.3
Q ss_pred CcccceeecCCCC-cccccceeecceeEeCCCCcHHHHHHHHHHHhh-----hCC--CCCCCccceeeecCCCccccccc
Q 028903 108 YMVKSTVVDSKTG-QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADF-----TFI--PMEHGEGIQVLHYEVGQKYDAHY 179 (202)
Q Consensus 108 ~l~~S~V~~~~~g-~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~~-----tgl--~~~~~E~lQv~rY~~Gg~Y~~H~ 179 (202)
.+..|.|.+..+| +..+...|.|++..+++ .+.+.|.+|++.+ -|. .+.-.|.+.+++|.+||+|++|.
T Consensus 44 ~~~~s~i~~~~~g~e~~~~~~~ksKqii~e~---~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~ 120 (418)
T PHA02869 44 ICEDSKIFFPEKRTELLSIKDRKSKQIVFEN---SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHR 120 (418)
T ss_pred ccccceeeccccCceeEeeccccceeEEech---HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCcccccc
Confidence 3678999987666 45666789999988874 5666666666644 343 45668899999999999999999
Q ss_pred cCCccccCCCCCCceeEEEEecC
Q 028903 180 DYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 180 D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
|+.... .+..-..|+|+||
T Consensus 121 Dg~~~r----s~e~s~~tLLLYL 139 (418)
T PHA02869 121 DFSTVF----SKNIICVHLLLYL 139 (418)
T ss_pred cCceec----CCCEEEEEEEEEE
Confidence 975432 2344467999997
No 7
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=97.05 E-value=0.00057 Score=47.60 Aligned_cols=39 Identities=28% Similarity=0.426 Sum_probs=33.3
Q ss_pred CCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 160 HGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 160 ~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
..+.++..+|..|++|.+|.|...... +.+|..|+|+||
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~~----~~~r~~t~llYL 47 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSSS----GKRRFLTLLLYL 47 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCcccc----ccceeEEEEEEe
Confidence 346789999999999999999876542 688999999997
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=96.12 E-value=0.009 Score=49.82 Aligned_cols=107 Identities=17% Similarity=0.204 Sum_probs=58.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC-CcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHHHHHh-------hhCCC
Q 028903 86 AFVYHNFLSKAECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIAD-------FTFIP 157 (202)
Q Consensus 86 I~l~~dfLs~eEc~~Li~lA~~-~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~-------~tgl~ 157 (202)
...|+.+|++++|..+.+.... .+....+..+..| ..+|.... ++. .++..+.+..-|.+ +.+.-
T Consensus 4 ~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~g~q~----a~vk~n~q--lp~-~s~l~~~vg~~il~al~~~plff~aA 76 (229)
T COG3128 4 MLHIPEVLSEAQVARIRAALEQAEWVDGRATQGPQG----AQVKNNLQ--LPQ-DSALARELGNEILQALTAHPLFFAAA 76 (229)
T ss_pred EEechhhCCHHHHHHHHHHHhhccccccccccCcch----hhhhcccc--CCc-ccHHHHHHHHHHHHHHHhchhHHHhh
Confidence 4568899999999999876542 2221111111111 22233322 222 23443333333221 22322
Q ss_pred C-CCCccceeeecCCCccccccccCCccccCCCCCCceeEEEEe
Q 028903 158 M-EHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLM 200 (202)
Q Consensus 158 ~-~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLi 200 (202)
+ ...++.++.+|+.|++|.+|.|..-... ....|.|+.|.|.
T Consensus 77 Lp~t~~~P~Fn~Y~eg~~f~fHvDgavr~~-hp~~~~~lrtdls 119 (229)
T COG3128 77 LPRTCLPPLFNRYQEGDFFGFHVDGAVRSI-HPGSGFRLRTDLS 119 (229)
T ss_pred cccccCCchhhhccCCCcccccccCccccc-CCCCCceeEeeee
Confidence 2 2567889999999999999999854331 1223557777653
No 9
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.74 E-value=0.1 Score=43.27 Aligned_cols=96 Identities=16% Similarity=0.147 Sum_probs=60.3
Q ss_pred EeeeCCCEEEEcCCCCHHHHHHHHHHhcCCccc-ceeec-----CCCCcccccceeecceeEeCCCCcHHHHHHHHHHHh
Q 028903 79 IVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVK-STVVD-----SKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIAD 152 (202)
Q Consensus 79 ~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~-S~V~~-----~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~ 152 (202)
++-..|.+++++||+++||-..+.+..+..-++ -++.. +-.|. .-+...+.++-.+..+.+..+|.+
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNyGGv-------vh~~glipeelP~wLq~~v~kinn 79 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNYGGV-------VHKTGLIPEELPPWLQYYVDKINN 79 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhcCCc-------cccCCcCccccCHHHHHHHHHhhc
Confidence 455678889999999999999998876532111 11110 00110 012234444456778888888874
Q ss_pred hhCCCCCCCccceeeecCCCccccccccCC
Q 028903 153 FTFIPMEHGEGIQVLHYEVGQKYDAHYDYF 182 (202)
Q Consensus 153 ~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f 182 (202)
+-=++ ...-..-|-.|.+||---||.|+-
T Consensus 80 lglF~-s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 80 LGLFK-SPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred ccccC-CCcceeEeecccCCCCcCcCCCCC
Confidence 32233 244456777899999999999973
No 10
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=94.70 E-value=0.24 Score=39.98 Aligned_cols=93 Identities=18% Similarity=0.151 Sum_probs=46.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC--CcccceeecCCCCcccccceee--cceeEeC---------------CC---CcHHH
Q 028903 86 AFVYHNFLSKAECEYLIDLAKP--YMVKSTVVDSKTGQSKDSRVRT--SSGTFLK---------------RG---QDRII 143 (202)
Q Consensus 86 I~l~~dfLs~eEc~~Li~lA~~--~l~~S~V~~~~~g~~~~s~~Rt--S~~awL~---------------~~---~d~vv 143 (202)
+++++|||+++|.+.|++.... .+...+... ++.. ...|. ....|.. .. -.+.+
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l 77 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM---GKVY-SLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWL 77 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC---CCEC-CECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC---CCEE-ccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHH
Confidence 5789999999999999998762 121111110 1110 00000 0011110 00 12345
Q ss_pred HHHHHHHHhhhC-CCCCCCccceeeecCCCccccccccCC
Q 028903 144 RGIEKRIADFTF-IPMEHGEGIQVLHYEVGQKYDAHYDYF 182 (202)
Q Consensus 144 ~~L~~Ri~~~tg-l~~~~~E~lQv~rY~~Gg~Y~~H~D~f 182 (202)
..+.+++....+ .+........|..|..|+.-.+|.|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~ 117 (194)
T PF13532_consen 78 SRLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDE 117 (194)
T ss_dssp HHHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---T
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcc
Confidence 666666665555 323344567788899999999999986
No 11
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=93.11 E-value=0.49 Score=41.10 Aligned_cols=120 Identities=12% Similarity=0.062 Sum_probs=58.8
Q ss_pred EeeeCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCc--ccccceeecceeEeCCCCcHHH------HHHHHHH
Q 028903 79 IVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQ--SKDSRVRTSSGTFLKRGQDRII------RGIEKRI 150 (202)
Q Consensus 79 ~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~--~~~s~~RtS~~awL~~~~d~vv------~~L~~Ri 150 (202)
....+-+ +++.++|+++||+.|.+....-+....+.....+. ......|. .+.....++.+ .+|.+.+
T Consensus 24 ~f~~dGy-vvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~l~~~p~l~~~~ 99 (277)
T TIGR02408 24 SYERDGF-LLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRS---IFEVHVLSPILARLVRDPRVANAA 99 (277)
T ss_pred HHHHCCE-EECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEE---EecccccCHHHHHHHcChHHHHHH
Confidence 4555666 67999999999999999876433221111000000 00011221 11111234433 3444556
Q ss_pred HhhhCCCCCCCccceeeecC-CCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 151 ADFTFIPMEHGEGIQVLHYE-VGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 151 ~~~tgl~~~~~E~lQv~rY~-~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
++++|-++......-+.+.+ .|+.+.||.|+..-.........+..|+.++|
T Consensus 100 ~~LlG~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaL 152 (277)
T TIGR02408 100 RQILGSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIAL 152 (277)
T ss_pred HHHcCCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEc
Confidence 67777554322111123444 35688899996321100000123578888876
No 12
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=92.84 E-value=0.56 Score=40.47 Aligned_cols=109 Identities=17% Similarity=0.192 Sum_probs=63.5
Q ss_pred CEEEEcCCCCHHHHHHHHHHhc-----CCcccceeecCCCCcccccceeecceeEeCCCCc---H---H---HHHHHHHH
Q 028903 85 RAFVYHNFLSKAECEYLIDLAK-----PYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQD---R---I---IRGIEKRI 150 (202)
Q Consensus 85 ~I~l~~dfLs~eEc~~Li~lA~-----~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d---~---v---v~~L~~Ri 150 (202)
-+.+++|||-.+-=..+.+..+ +.+....+..+... ...++|..+.+|+...+. . + ++.+....
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~~~--~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~ 131 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPDAF--HSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC 131 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCcCC--cchhhccCCceEecCCCCCccceeeecccchhhhhhh
Confidence 4678899998775554444332 24544444433222 223899999999986432 1 1 12222221
Q ss_pred HhhhCCCCCCCccceeeecCC-CccccccccCCccccCCCCCCceeEEEEecC
Q 028903 151 ADFTFIPMEHGEGIQVLHYEV-GQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 151 ~~~tgl~~~~~E~lQv~rY~~-Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
....|-..-.--.--|+.|+. |-.|-.|.|.- .+.-|..|.+.||
T Consensus 132 ~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP-------~gDGRcITcIYYl 177 (280)
T KOG3710|consen 132 NGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNP-------HGDGRCITCIYYL 177 (280)
T ss_pred ccccccccccceeEEEEEecCCCceeeEeccCC-------CCCceEEEEEEEc
Confidence 111221111223456899985 88999999864 3468999999997
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=92.62 E-value=0.39 Score=41.72 Aligned_cols=104 Identities=15% Similarity=0.084 Sum_probs=59.1
Q ss_pred CCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeecceeEeCCC--Cc-H------HHHHHHHHHH--hhhCC-CC
Q 028903 91 NFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRG--QD-R------IIRGIEKRIA--DFTFI-PM 158 (202)
Q Consensus 91 dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~--~d-~------vv~~L~~Ri~--~~tgl-~~ 158 (202)
..++++..+.+.+..-..+.++.+.... ........+....-|+.+. .. + .++.++.-.. .++|. +.
T Consensus 55 ~li~r~~~~~~~e~i~~~~~~~~i~r~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~es~r~~~~~~~~lg~l~~ 133 (252)
T COG3751 55 ELITRQVREELGEEIAEAFKEAAILRGG-QIQVFAFLSGDLKDELDPTRSPNLPVQRYLEFSESIRFILGLPQLLGILDV 133 (252)
T ss_pred hhcCHHHHHHHHhhhhhhccccceeccc-cceeeeecchhhhhhhcccccccchHHHHHHHHHHHHHHhchhhhcCccce
Confidence 5555666666666554455566665432 2223344455555566622 11 1 1222211111 12231 23
Q ss_pred CCCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 159 EHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 159 ~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
... ..|+.-|.+|.+|..|-|.+.+. ..|.+|.+.|+
T Consensus 134 ~~v-e~~~~~y~~G~~l~~H~D~~~~~------~~R~~~yv~y~ 170 (252)
T COG3751 134 SEV-EGQITVYNPGCFLLKHDDNGRDK------DIRLATYVYYL 170 (252)
T ss_pred eee-eeeeeEecCCceeEeecccCCCc------cceEEEEEecc
Confidence 344 58999999999999999998753 68888888875
No 14
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=91.68 E-value=0.49 Score=42.72 Aligned_cols=77 Identities=22% Similarity=0.310 Sum_probs=52.0
Q ss_pred ccccceeecceeEeCC-CCcHHHHHHHHHHHhhh-C-C-CCCCCccceeeecCCCccccccccCCccccCCCCCCceeEE
Q 028903 122 SKDSRVRTSSGTFLKR-GQDRIIRGIEKRIADFT-F-I-PMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMAT 197 (202)
Q Consensus 122 ~~~s~~RtS~~awL~~-~~d~vv~~L~~Ri~~~t-g-l-~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aT 197 (202)
..+...|.|+..-++. ..+++.++|.+.+..-+ . + .+.-.+.+.+++|+.|++|+.|.|..... .....-.+
T Consensus 35 ~~d~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~~----~~n~~~y~ 110 (339)
T PF03336_consen 35 IFDHEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKRD----SKNCLEYH 110 (339)
T ss_pred cccccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhcccceec----cCCceEEE
Confidence 3444489999877773 34678888887766433 2 1 22345679999999999999999943322 33455667
Q ss_pred EEecC
Q 028903 198 LLMYL 202 (202)
Q Consensus 198 vLiYL 202 (202)
+++||
T Consensus 111 LvLyL 115 (339)
T PF03336_consen 111 LVLYL 115 (339)
T ss_pred EEEEE
Confidence 77775
No 15
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=90.45 E-value=0.33 Score=42.00 Aligned_cols=93 Identities=22% Similarity=0.275 Sum_probs=54.4
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcC---CcccceeecCCCCcc---cccceeecceeEeCCCCcHHHHHHHHHHHhhhCCC
Q 028903 84 PRAFVYHNFLSKAECEYLIDLAKP---YMVKSTVVDSKTGQS---KDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTFIP 157 (202)
Q Consensus 84 P~I~l~~dfLs~eEc~~Li~lA~~---~l~~S~V~~~~~g~~---~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~~tgl~ 157 (202)
|=|.++|||||.+|=..|+++... ....|.-...+-|-. ...+.|+..-+- .....+-+.+|+.+..++.
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G----~P~~~~~v~rrm~~yp~l~ 147 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVG----MPEYADMVLRRMSEYPVLK 147 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccC----CchHHHHHHHHhhccchhh
Confidence 778999999999999999998763 122222111111211 122344433222 3456777778888876653
Q ss_pred C-CCCccceeeecCC--CccccccccC
Q 028903 158 M-EHGEGIQVLHYEV--GQKYDAHYDY 181 (202)
Q Consensus 158 ~-~~~E~lQv~rY~~--Gg~Y~~H~D~ 181 (202)
. .-.|.. =+-|.+ |..-+||.|-
T Consensus 148 gfqp~EqC-nLeYep~kgsaIdpH~DD 173 (306)
T KOG3959|consen 148 GFQPFEQC-NLEYEPVKGSAIDPHQDD 173 (306)
T ss_pred ccCcHHHc-CcccccccCCccCccccc
Confidence 2 112222 234665 8999999984
No 16
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=90.00 E-value=0.17 Score=36.39 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.9
Q ss_pred ccceeeecC---CCccccccccCC
Q 028903 162 EGIQVLHYE---VGQKYDAHYDYF 182 (202)
Q Consensus 162 E~lQv~rY~---~Gg~Y~~H~D~f 182 (202)
+.+++.+|. .|..+.+|.|..
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~ 25 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE 25 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES-
T ss_pred CEEEEEECCCcccCCceeCCCcCC
Confidence 468999999 899999999984
No 17
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=89.52 E-value=0.16 Score=36.72 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=16.9
Q ss_pred ceeeecCCCccccccccCC
Q 028903 164 IQVLHYEVGQKYDAHYDYF 182 (202)
Q Consensus 164 lQv~rY~~Gg~Y~~H~D~f 182 (202)
+|+.+|++|++|+||.|..
T Consensus 1 ~~~~~y~~G~~~~~H~D~~ 19 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNS 19 (100)
T ss_dssp -EEEEEETTEEEEEEESSS
T ss_pred CEEEEECcCCEEeeeECCC
Confidence 4899999999999999994
No 18
>PHA02866 Hypothetical protein; Provisional
Probab=87.65 E-value=0.76 Score=40.97 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=54.6
Q ss_pred CcccceeecCCCC-cccccceeecceeEeCCCCcHHHHHHHHHHHhhh--CCCCCCCccceeeecCCCccccccccCCcc
Q 028903 108 YMVKSTVVDSKTG-QSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT--FIPMEHGEGIQVLHYEVGQKYDAHYDYFLD 184 (202)
Q Consensus 108 ~l~~S~V~~~~~g-~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~~t--gl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~ 184 (202)
.+.+|.|.+...| .-.....|.++++ +++..++. |+.++. .-++--.+.+-+++|..|.+|+-|+|....
T Consensus 31 ~w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~ 103 (333)
T PHA02866 31 SWEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTE 103 (333)
T ss_pred ccchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEe
Confidence 3888988876555 4456667777764 56777666 433332 223334567899999999999999987553
Q ss_pred ccCCCCCCceeEEEEecC
Q 028903 185 EFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 185 ~~~~~~~g~R~aTvLiYL 202 (202)
. ....+-.++++||
T Consensus 104 ~----~~~~~~Y~LvLyL 117 (333)
T PHA02866 104 D----RHRGREYTLVLHL 117 (333)
T ss_pred c----cCCceEEEEEEEE
Confidence 3 2234455666664
No 19
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=82.23 E-value=7.6 Score=32.92 Aligned_cols=95 Identities=18% Similarity=0.191 Sum_probs=59.1
Q ss_pred eCCCEEEEcCCCCHHHHHHHHHHhcC-----CcccceeecCCCCcccccceeec-ce--eEeCCC---------------
Q 028903 82 WEPRAFVYHNFLSKAECEYLIDLAKP-----YMVKSTVVDSKTGQSKDSRVRTS-SG--TFLKRG--------------- 138 (202)
Q Consensus 82 ~~P~I~l~~dfLs~eEc~~Li~lA~~-----~l~~S~V~~~~~g~~~~s~~RtS-~~--awL~~~--------------- 138 (202)
..|-++++++|. .+|.+.|++..+. .+..-.+.+ |. .-.+|.+ -+ .|+.+.
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~g---g~--~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~p 89 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPG---GY--TMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKP 89 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCC---CC--cceeEEeccccceEecCCCCcccCCcCCCCCCC
Confidence 456788999996 7887877765542 233322211 11 1112211 11 332100
Q ss_pred ---CcHHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccCC
Q 028903 139 ---QDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYF 182 (202)
Q Consensus 139 ---~d~vv~~L~~Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f 182 (202)
-.+.+..|.++++...|.+....+..-|-.|.+|+.-.+|.|..
T Consensus 90 wp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~ 136 (213)
T PRK15401 90 WPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKD 136 (213)
T ss_pred CCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCC
Confidence 12368899999998888765556678888899999999999964
No 20
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=76.32 E-value=22 Score=31.24 Aligned_cols=92 Identities=11% Similarity=-0.031 Sum_probs=48.1
Q ss_pred eCCCEEEEcCCCCHHHHHHHHHHhcCCccc-ceeecCCCCcccccceeecceeEeCCCCcHHH------HHHHHHHHhhh
Q 028903 82 WEPRAFVYHNFLSKAECEYLIDLAKPYMVK-STVVDSKTGQSKDSRVRTSSGTFLKRGQDRII------RGIEKRIADFT 154 (202)
Q Consensus 82 ~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~-S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv------~~L~~Ri~~~t 154 (202)
.+-+ +++.++|+++|++.|.+.++..+.. +.......+ ...|. .|-....++.+ .+|.+.++.++
T Consensus 13 e~Gy-v~~~~~~s~eei~~L~~~~~~~l~~~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~l~~~~~l~~~~~~ll 84 (288)
T TIGR01762 13 KNGF-IGPFTLYSPEEMKETWKRIRLRLLDRSAAPYQDLG----GTNIA---NYDRHLDDDFLASHICRPEICHRVESIL 84 (288)
T ss_pred hCCE-EeCcCCCCHHHHHHHHHHHHHHhhccccccccCCC----CceeE---eeeecccCHHHHHHhcCHHHHHHHHHHh
Confidence 4455 5589999999999999887543321 110000001 11111 12122223322 44555666777
Q ss_pred CCCCCCCccceeeecCCCccccccccC
Q 028903 155 FIPMEHGEGIQVLHYEVGQKYDAHYDY 181 (202)
Q Consensus 155 gl~~~~~E~lQv~rY~~Gg~Y~~H~D~ 181 (202)
|-++...-.--+.+...++...||.|.
T Consensus 85 G~~v~l~~~~~~~K~pg~~~~~wHQD~ 111 (288)
T TIGR01762 85 GPNVLCWRTEFFPKYPGDEGTDWHQAD 111 (288)
T ss_pred CCcEEeeeceeeeeCCCCCCCCCCccC
Confidence 865533222234555555568999994
No 21
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=75.94 E-value=3.6 Score=32.33 Aligned_cols=21 Identities=33% Similarity=0.290 Sum_probs=17.5
Q ss_pred EEEcCCCCHHHHHHHHHHhcC
Q 028903 87 FVYHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 87 ~l~~dfLs~eEc~~Li~lA~~ 107 (202)
+++.|+|+++||+.|.+....
T Consensus 7 vvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 7 VVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp EEETTSS-HHHHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHHHHH
Confidence 679999999999999987764
No 22
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=67.90 E-value=12 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.101 Sum_probs=11.4
Q ss_pred CccccccccccccchhHHHHHHHH
Q 028903 1 MVKLRHSRLQAKKWSTLTLVLSML 24 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (202)
|+|.|..+-.......|.+.++=|
T Consensus 1 Makkk~~~~~~~~~~~WlvtyaDl 24 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLVTYADL 24 (58)
T ss_pred CCCCCCCCCCCCCCccHHHHHHHH
Confidence 677766333333344444444433
No 23
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=67.14 E-value=12 Score=25.50 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=25.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 028903 11 AKKWSTLTLVLSMLFMLTIVLLMLLAMGIF 40 (202)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (202)
.+-|.-+||++.++...+|.+++-+..+||
T Consensus 12 skFW~YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 12 SKFWTYFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778899999999999999888888887
No 24
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=66.43 E-value=9.4 Score=31.07 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccC
Q 028903 141 RIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDY 181 (202)
Q Consensus 141 ~vv~~L~~Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~ 181 (202)
+.+..|.++++...|.+....+..-|-.|.+|+.-.+|.|.
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~ 114 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDR 114 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccc
Confidence 67899999999999986666777788889999999999995
No 25
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=43.50 E-value=42 Score=25.61 Aligned_cols=74 Identities=16% Similarity=0.176 Sum_probs=46.2
Q ss_pred HHHHHHHhcC-CcccceeecCCCCcccccceeecceeEeCCC---------CcHHHHHHHHHHHhhhCCCCCCCccceee
Q 028903 98 CEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRG---------QDRIIRGIEKRIADFTFIPMEHGEGIQVL 167 (202)
Q Consensus 98 c~~Li~lA~~-~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~---------~d~vv~~L~~Ri~~~tgl~~~~~E~lQv~ 167 (202)
-++|++.++. .+..++|..+-.|-...+...+++..-|+.+ ..+-+.++-..+..+.+...-..|+.+|+
T Consensus 25 ~~~iverlre~Gi~GATVlRGI~GfG~~~~~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e~~~~~lit~e~v~V~ 104 (109)
T COG1993 25 YEAIVERLREEGIRGATVLRGIAGFGKDGKIHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDEIIKNGLITLEPVEVV 104 (109)
T ss_pred HHHHHHHHHHcCcCceeeeeeeeccCCCCcccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHHHhhcceEEEEEEEEE
Confidence 4567777754 7888998876544333444444444333332 23445555556666666666778899999
Q ss_pred ecCC
Q 028903 168 HYEV 171 (202)
Q Consensus 168 rY~~ 171 (202)
.|+.
T Consensus 105 ~~gs 108 (109)
T COG1993 105 YYGS 108 (109)
T ss_pred EccC
Confidence 9985
No 26
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=35.84 E-value=51 Score=30.41 Aligned_cols=40 Identities=18% Similarity=0.334 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCCccceeeecC-CCccccccccCCcc
Q 028903 141 RIIRGIEKRIADFTFIPMEHGEGIQVLHYE-VGQKYDAHYDYFLD 184 (202)
Q Consensus 141 ~vv~~L~~Ri~~~tgl~~~~~E~lQv~rY~-~Gg~Y~~H~D~f~~ 184 (202)
|-++.+.+ .+-++|--...++-|. |. +||-|++|+|..+.
T Consensus 101 p~v~~l~~---~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YDV 141 (383)
T COG2850 101 PEVAALME---PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYDV 141 (383)
T ss_pred HHHHHHHH---HhccCccccccceEEE-EecCCCccCccccchhe
Confidence 45555555 4456776666666666 65 69999999998763
No 27
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=32.20 E-value=48 Score=25.05 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhhhhccc
Q 028903 23 MLFMLTIVLLMLLAMGIFYIP 43 (202)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~ 43 (202)
++.+++++++|++++.|+.-.
T Consensus 3 Ll~il~llLll~l~asl~~wr 23 (107)
T PF15330_consen 3 LLGILALLLLLSLAASLLAWR 23 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666443
No 28
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=31.60 E-value=41 Score=25.36 Aligned_cols=12 Identities=25% Similarity=0.669 Sum_probs=5.0
Q ss_pred HHHHHHhhhhcc
Q 028903 31 LLMLLAMGIFYI 42 (202)
Q Consensus 31 ~~~~~~~~~~~~ 42 (202)
++++-++|+.++
T Consensus 19 ~~~~~~~~~~~l 30 (181)
T PF12729_consen 19 LLIVGIVGLYSL 30 (181)
T ss_pred HHHHHHHHHHHH
Confidence 333334444444
No 29
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=30.85 E-value=1.3e+02 Score=20.02 Aligned_cols=22 Identities=23% Similarity=0.779 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhhhhccccCCC
Q 028903 26 MLTIVLLMLLAMGIFYIPIGDD 47 (202)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~ 47 (202)
.++.++.++|+++++++.++.+
T Consensus 30 vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 30 VISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred HHHHHHHHHHHHHHhhhccCcc
Confidence 4566777888888888866543
No 30
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=30.46 E-value=59 Score=28.84 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=17.1
Q ss_pred EcCCCCHHHHHHHHHHhcC
Q 028903 89 YHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 89 ~~dfLs~eEc~~Li~lA~~ 107 (202)
..+|||++|+++|.+.++.
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAED 65 (284)
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 5799999999999999974
No 31
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=29.02 E-value=75 Score=26.32 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=16.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHhhhhcc
Q 028903 10 QAKKWSTLTLVLSMLFMLTIVLLMLLAMGIFYI 42 (202)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (202)
.+|+++..-+.+..++|++++.+.+++..++++
T Consensus 4 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~v~l~~ 36 (188)
T PRK13726 4 GARLSTSRVMAIAFIFLSVLIVLSLSVNVIQGV 36 (188)
T ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544444444444455555555555555543
No 32
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=29.02 E-value=61 Score=24.44 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHhhh
Q 028903 24 LFMLTIVLLMLLAMGI 39 (202)
Q Consensus 24 ~~~~~~~~~~~~~~~~ 39 (202)
|+-++++++++++++|
T Consensus 71 ~~~~ti~lv~~~~~~I 86 (103)
T PF12955_consen 71 FAGFTIALVVLVAGAI 86 (103)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 33
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=28.69 E-value=82 Score=23.04 Aligned_cols=19 Identities=11% Similarity=0.394 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028903 18 TLVLSMLFMLTIVLLMLLA 36 (202)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~ 36 (202)
-..|++|+++.|+||++|.
T Consensus 43 Wv~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 43 WVSLAAFVVFLFLILLYMS 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3445556666655555543
No 34
>TIGR02223 ftsN cell division protein FtsN. FtsN is a poorly conserved protein active in cell division in a number of Proteobacteria. The N-terminal 30 residue region tends to by Lys/Arg-rich, and is followed by a membrane-spanning region. This is followed by an acidic low-complexity region of variable length and a well-conserved C-terminal domain of two tandem regions matched by Pfam model pfam05036 (Sporulation related repeat), found in several cell division and sporulation proteins. The role of FtsN as a suppressor for other cell division mutations is poorly understood; it may involve cell wall hydrolysis.
Probab=27.73 E-value=1.4e+02 Score=26.58 Aligned_cols=14 Identities=14% Similarity=0.204 Sum_probs=9.5
Q ss_pred CCCHHHHHHHHHHh
Q 028903 92 FLSKAECEYLIDLA 105 (202)
Q Consensus 92 fLs~eEc~~Li~lA 105 (202)
-|++++.+.|-.+-
T Consensus 113 ~lt~eq~q~leq~~ 126 (298)
T TIGR02223 113 QLTAEQRQLLEQMQ 126 (298)
T ss_pred ccCHHHHHHHHHHH
Confidence 46788877776543
No 35
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=27.08 E-value=27 Score=25.26 Aligned_cols=15 Identities=20% Similarity=0.419 Sum_probs=12.7
Q ss_pred EcCCCCHHHHHHHHH
Q 028903 89 YHNFLSKAECEYLID 103 (202)
Q Consensus 89 ~~dfLs~eEc~~Li~ 103 (202)
-++|+|++|||.+..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 378999999999865
No 36
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=26.98 E-value=66 Score=26.93 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccCCcc
Q 028903 141 RIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLD 184 (202)
Q Consensus 141 ~vv~~L~~Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~ 184 (202)
|..-.+...+...+|.+....|..-+-.|.+|..-.+|.|.-..
T Consensus 85 p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~ 128 (194)
T COG3145 85 PPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEE 128 (194)
T ss_pred CccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccc
Confidence 44445666667788999888898999999999999999997553
No 37
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=26.95 E-value=71 Score=27.08 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=13.5
Q ss_pred ccchhH-HHHHHHHHHHHHHHHHHH
Q 028903 12 KKWSTL-TLVLSMLFMLTIVLLMLL 35 (202)
Q Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~~ 35 (202)
|..|++ |+.+..+-++.|+++.++
T Consensus 148 Rr~STwgT~~lmgvNvllFl~~~~~ 172 (207)
T PF05546_consen 148 RRASTWGTWGLMGVNVLLFLVAQLL 172 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555 566655556666665554
No 38
>PF14851 FAM176: FAM176 family
Probab=25.00 E-value=77 Score=25.58 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccc
Q 028903 21 LSMLFMLTIVLLMLLAMGIFYIPI 44 (202)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~ 44 (202)
+.++|++++++-+||.|.++.+-.
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~ri 45 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRI 45 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456677777776666666664443
No 39
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=24.56 E-value=99 Score=26.07 Aligned_cols=6 Identities=17% Similarity=0.346 Sum_probs=4.1
Q ss_pred Cccccc
Q 028903 1 MVKLRH 6 (202)
Q Consensus 1 ~~~~~~ 6 (202)
|+|.|+
T Consensus 1 M~~k~~ 6 (230)
T PRK06925 1 MERRKR 6 (230)
T ss_pred CCCCcc
Confidence 777664
No 40
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=22.63 E-value=1e+02 Score=24.52 Aligned_cols=19 Identities=21% Similarity=0.245 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028903 19 LVLSMLFMLTIVLLMLLAM 37 (202)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (202)
+++.++++..++.|++.+|
T Consensus 12 ~~~~~~~~~~~~~L~~~a~ 30 (148)
T PRK13254 12 ILGALAALGLAVALVLYAL 30 (148)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333334444555554
No 41
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=22.17 E-value=1.1e+02 Score=17.75 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=3.5
Q ss_pred cccccccchhHHHHHHHHH
Q 028903 7 SRLQAKKWSTLTLVLSMLF 25 (202)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (202)
.+...++..-+||+=.+..
T Consensus 6 ~~~~~~~~~GFTLiEllVa 24 (31)
T PF13544_consen 6 RRRRRRRQRGFTLIELLVA 24 (31)
T ss_dssp ------------HHHHHHH
T ss_pred ccccccccCCccHHHHHHH
Confidence 3334444555566654443
No 42
>COG4902 Uncharacterized protein conserved in archaea [Function unknown]
Probab=21.53 E-value=97 Score=25.18 Aligned_cols=16 Identities=19% Similarity=0.227 Sum_probs=9.0
Q ss_pred HHHHhhhhccccCCCC
Q 028903 33 MLLAMGIFYIPIGDDD 48 (202)
Q Consensus 33 ~~~~~~~~~~~~~~~~ 48 (202)
+-+.+|+.+.-.++.+
T Consensus 16 ~t~v~~~~~~~~gt~~ 31 (189)
T COG4902 16 ITAVVGISGCQEGTNS 31 (189)
T ss_pred HHHHHhhhhhccCCCC
Confidence 3344577766666543
No 43
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=21.49 E-value=1.5e+02 Score=26.25 Aligned_cols=17 Identities=24% Similarity=0.343 Sum_probs=14.4
Q ss_pred cCCCCHHHHHHHHHHhc
Q 028903 90 HNFLSKAECEYLIDLAK 106 (202)
Q Consensus 90 ~dfLs~eEc~~Li~lA~ 106 (202)
.++||++|+|+|.+...
T Consensus 3 ~~~LSQ~EIdaLL~~~~ 19 (337)
T PRK06666 3 DDILSQEEIDALLSGVS 19 (337)
T ss_pred ccccCHHHHHHHHhccc
Confidence 58999999999987544
No 44
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=21.39 E-value=1.4e+02 Score=21.28 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhc
Q 028903 20 VLSMLFMLTIVLLMLLAMGIFY 41 (202)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~ 41 (202)
++.|.+.|.|++++.+++.+.+
T Consensus 12 v~GM~~VF~fL~lLi~~i~~~~ 33 (82)
T TIGR01195 12 VLGMGIVFLFLSLLIYAVRGMG 33 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555544
No 45
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.47 E-value=1.7e+02 Score=21.50 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=9.5
Q ss_pred HHHHHhhhhccccCC
Q 028903 32 LMLLAMGIFYIPIGD 46 (202)
Q Consensus 32 ~~~~~~~~~~~~~~~ 46 (202)
++-+..+++++|...
T Consensus 33 l~~ll~~~~~~p~~~ 47 (108)
T PF07219_consen 33 LLRLLRRLLSLPSRV 47 (108)
T ss_pred HHHHHHHHHhChHHH
Confidence 444445888888664
No 46
>TIGR02258 2_5_ligase 2'-5' RNA ligase. This protein family consists of bacterial and archaeal proteins with two tandem copies of Pfam domain pfam02834. Members for which activity has been measured perform a reversible, ATP-independent 2'-5'-ligation of what is presumably a non-phyiological substrate: half-tRNA splice intermediates from an intron-containing yeast tRNA. The physiological substrate(s) in prokaryotes may include small 2'-5'-link-containing oligonucleotides, perhaps with regulatory or biosynthetic roles.
Probab=20.22 E-value=4.2e+02 Score=20.60 Aligned_cols=88 Identities=9% Similarity=-0.000 Sum_probs=45.0
Q ss_pred CCCEEE-EcCCCCHHHHHHHHHHhcCCcccc-eeecCCCCcccccceeecceeEeCCCCcHHHHHHHHHHHhhh---CCC
Q 028903 83 EPRAFV-YHNFLSKAECEYLIDLAKPYMVKS-TVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFT---FIP 157 (202)
Q Consensus 83 ~P~I~l-~~dfLs~eEc~~Li~lA~~~l~~S-~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~~t---gl~ 157 (202)
+++|.+ +-+-+++++++.+++..+....+. .+.- +|-......+.....|+....++-+.+|.+++.+.. |++
T Consensus 38 ~~HiTL~flg~~~~~~~~~l~~~l~~~~~~~f~l~l--~~~~~F~~~~~~~vl~l~~~~~~~L~~L~~~l~~~~~~~g~~ 115 (179)
T TIGR02258 38 NLHITLKFLGEVDEEQVEELEDALAKIAEPPFTLKL--EGIGVFGNPKRPRVLWAGVEQSEELTQLHADLERELAKLGFS 115 (179)
T ss_pred HCEEEEEEccCCCHHHHHHHHHHHHHhcCCCeEEEE--eeeeeCCCCCCCeEEEEeeCCCHHHHHHHHHHHHHHHHcCCC
Confidence 446655 455578888888876544211111 1110 111111112234578998765666777777776543 444
Q ss_pred C---CCCccceeeecCCC
Q 028903 158 M---EHGEGIQVLHYEVG 172 (202)
Q Consensus 158 ~---~~~E~lQv~rY~~G 172 (202)
. .....+-+.++...
T Consensus 116 ~~~~~f~PHiTlar~~~~ 133 (179)
T TIGR02258 116 KEERPFTPHITLARKKSG 133 (179)
T ss_pred CCCCCcCCCEEEEEecCC
Confidence 2 23345556665543
Done!