Query 028903
Match_columns 202
No_of_seqs 189 out of 1118
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:35:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 100.0 2.9E-32 9.8E-37 227.9 14.2 134 69-202 5-140 (224)
2 3itq_A Prolyl 4-hydroxylase, a 100.0 1.3E-30 4.6E-35 218.4 9.5 127 69-202 24-150 (216)
3 3dkq_A PKHD-type hydroxylase S 99.6 2.2E-16 7.6E-21 134.2 6.5 118 77-202 12-138 (243)
4 2hbt_A EGL nine homolog 1; pro 99.4 1E-12 3.5E-17 111.6 11.9 113 80-202 23-151 (247)
5 3kt7_A PKHD-type hydroxylase T 96.6 0.0088 3E-07 56.5 9.8 48 146-202 106-155 (633)
6 2iuw_A Alkylated repair protei 96.0 0.11 3.7E-06 43.2 12.2 90 85-182 41-147 (238)
7 3s57_A Alpha-ketoglutarate-dep 95.7 0.14 4.8E-06 41.5 11.4 96 79-182 5-121 (204)
8 3tht_A Alkylated DNA repair pr 94.9 0.13 4.5E-06 45.2 9.4 97 82-183 109-219 (345)
9 3i3q_A Alpha-ketoglutarate-dep 88.6 1.6 5.4E-05 35.6 7.7 41 141-181 84-124 (211)
10 3emr_A ECTD; double stranded b 72.1 1.3 4.3E-05 37.8 1.4 31 76-107 39-69 (310)
11 2rdq_A 1-deoxypentalenic acid 72.1 1.7 6E-05 35.8 2.2 30 77-107 25-54 (288)
12 2fct_A Syringomycin biosynthes 70.9 9 0.00031 31.8 6.4 27 80-107 18-44 (313)
13 2rg4_A Uncharacterized protein 66.4 8.1 0.00028 31.1 5.0 18 163-180 104-121 (216)
14 1o51_A Hypothetical protein TM 59.3 7.4 0.00025 28.6 3.2 74 97-170 31-114 (114)
15 3gja_A CYTC3; halogenase, beta 40.8 21 0.00071 30.2 3.5 29 79-108 19-47 (319)
16 2dcl_A Hypothetical UPF0166 pr 31.0 28 0.00095 25.9 2.4 77 97-173 27-113 (127)
17 3dgp_A RNA polymerase II trans 29.4 38 0.0013 23.3 2.7 22 86-107 23-44 (80)
18 3dom_A RNA polymerase II trans 22.8 57 0.0019 23.8 2.7 22 86-107 51-72 (108)
19 3nnf_A CURA; non-HAEM Fe(II)/a 22.1 12 0.00041 32.6 -1.2 96 82-180 39-141 (344)
20 2opw_A Phyhd1 protein; double- 21.6 63 0.0021 26.2 3.2 24 83-107 15-38 (291)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.98 E-value=2.9e-32 Score=227.94 Aligned_cols=134 Identities=52% Similarity=0.946 Sum_probs=121.8
Q ss_pred ccccCCceEEEeeeCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHH
Q 028903 69 AEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEK 148 (202)
Q Consensus 69 ~~~~~~~kvE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~ 148 (202)
..++++.|+|+||++|+|++||||||++||++|++++++++.+|++.++.+|....+++|+|+++|++...++++++|++
T Consensus 5 ~~~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ 84 (224)
T 2jig_A 5 LKEEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEK 84 (224)
T ss_dssp --CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHH
T ss_pred cccccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHH
Confidence 34788999999999999999999999999999999999999999998876677788899999999999877899999999
Q ss_pred HHHhhhCCCCCCCccceeeecCCCccccccccCCccccCC--CCCCceeEEEEecC
Q 028903 149 RIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNT--KNGGQRMATLLMYL 202 (202)
Q Consensus 149 Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~--~~~g~R~aTvLiYL 202 (202)
||.+++|+|...+|++||+||++||+|++|+|++....+. ..+++|++|+|+||
T Consensus 85 ri~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YL 140 (224)
T 2jig_A 85 RVAQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYL 140 (224)
T ss_dssp HHHHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEEC
T ss_pred HHHHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEe
Confidence 9999999999999999999999999999999998764322 45689999999998
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.96 E-value=1.3e-30 Score=218.41 Aligned_cols=127 Identities=41% Similarity=0.647 Sum_probs=107.7
Q ss_pred ccccCCceEEEeeeCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHH
Q 028903 69 AEEKGEQWTEIVAWEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEK 148 (202)
Q Consensus 69 ~~~~~~~kvE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~ 148 (202)
..+....+++++|++|+|++||||||++||++|+++|++++++|+|... ...+++|+|+++|++. ++++++|++
T Consensus 24 ~~~~r~v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~--~~~v~~i~~ 97 (216)
T 3itq_A 24 KTEDREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD--NELTAKIEK 97 (216)
T ss_dssp ECSSCEEEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC--CHHHHHHHH
T ss_pred ecCCceEEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC--cHHHHHHHH
Confidence 3344568899999999999999999999999999999999999998322 4567899999999987 899999999
Q ss_pred HHHhhhCCCCCCCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 149 RIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 149 Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
||++++|++.+++|.+||+||++||+|++|+|++.... ....|+|++|+++||
T Consensus 98 Ri~~~~gl~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~-~~~~~~R~~T~l~YL 150 (216)
T 3itq_A 98 RISSIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHS-RSAANNRISTLVMYL 150 (216)
T ss_dssp HHHHHHTSCGGGBCCCEEEEECBTCCEEEECSSCCTTS-GGGGGCEEEEEEEEC
T ss_pred HHHHhcCceeccccceeEEEeCCCCccccccCCCcCCC-cccCCceEEEEEEec
Confidence 99999999999999999999999999999999987532 123589999999998
No 3
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=99.63 E-value=2.2e-16 Score=134.19 Aligned_cols=118 Identities=13% Similarity=0.108 Sum_probs=88.8
Q ss_pred EEEeeeCCCEEEEcCCCCHHHHHHHHHHhcC-CcccceeecCCCCcccccceeecceeEeCCCCcHHHHHHHHHHHhhhC
Q 028903 77 TEIVAWEPRAFVYHNFLSKAECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQDRIIRGIEKRIADFTF 155 (202)
Q Consensus 77 vE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~-~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d~vv~~L~~Ri~~~tg 155 (202)
-|-+-.++.+++|+||||++||++|+++++. .+.++.+.. ......+|.+ .|+.. +++++++|.+||.+.++
T Consensus 12 ~~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t~----g~~~~~vr~n--~~l~~-d~~~~~~l~~~i~~~l~ 84 (243)
T 3dkq_A 12 HENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQTS----GAMATTRKRN--QQLDK-DDPVAVALGQQIMDRLL 84 (243)
T ss_dssp --CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCCS----SBSSCCCEEE--EECCT-TCHHHHHHHHHHHHHHH
T ss_pred ccccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCcccC----CCccccceee--eEECC-CCHHHHHHHHHHHHHHc
Confidence 3556778999999999999999999999964 455544322 2334456654 56664 57899999999999887
Q ss_pred CC--------CCCCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 156 IP--------MEHGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 156 l~--------~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
.. ....|++|+++|++|++|++|+|++...... .+.+|.+|+++||
T Consensus 85 ~~~~f~~~~L~~~~e~~~~~rY~~G~~y~~H~D~~~~~~~~-~~~~r~~T~~lYL 138 (243)
T 3dkq_A 85 AHPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPD-GMIRTDLSATLFL 138 (243)
T ss_dssp TCHHHHHHHCEEEEEEEEEEEECTTCEEEEECBCSEEEETT-EEEECCEEEEEEC
T ss_pred cCcchhhcccccccccceEEEECCCCeeccCCCCCCCCCCC-ccccceEEEEEEe
Confidence 66 1457889999999999999999998653210 1246899999998
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=99.42 E-value=1e-12 Score=111.56 Aligned_cols=113 Identities=18% Similarity=0.221 Sum_probs=80.7
Q ss_pred eeeCCCEEEEcCCCCHHHHHHHHHHhcC-----CcccceeecCCCCcccccceeecceeEeCCCCc--H----HHHHHHH
Q 028903 80 VAWEPRAFVYHNFLSKAECEYLIDLAKP-----YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRGQD--R----IIRGIEK 148 (202)
Q Consensus 80 LS~~P~I~l~~dfLs~eEc~~Li~lA~~-----~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~~d--~----vv~~L~~ 148 (202)
+...+ +++++|||+++||+.|++.++. .++++.+... +......+|+++.+|++.... + +.+.+.+
T Consensus 23 L~~~g-~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~ 99 (247)
T 2hbt_A 23 MNKHG-ICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDD 99 (247)
T ss_dssp HHHTS-EEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHH
T ss_pred hccCC-EEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccccchhHHHHHHHHHHH
Confidence 34444 5889999999999999998863 4777777652 234667899999999997532 2 2344444
Q ss_pred HHHhhhC-CCCC---CCccceeeecCC-CccccccccCCccccCCCCCCceeEEEEecC
Q 028903 149 RIADFTF-IPME---HGEGIQVLHYEV-GQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 149 Ri~~~tg-l~~~---~~E~lQv~rY~~-Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
.+..+.+ +... ..+.+|+++|++ |++|.+|.|... +.+|.+|+++||
T Consensus 100 l~~~ln~~lGl~~i~~~~e~~~~~Y~~~G~~y~~H~D~~~-------~~~R~~T~vlYL 151 (247)
T 2hbt_A 100 LIRHCNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPN-------GDGRCVTCIYYL 151 (247)
T ss_dssp HHHHTTTTSTTCCEEEECCEEEEEECSSSCCEEEECSSCS-------CCSEEEEEEEEC
T ss_pred HHHHHhhhcCcccccccceEEEEEecCCCCcccccccCCC-------CCCceEEEEEEe
Confidence 4333322 1211 135699999997 999999999832 368999999998
No 5
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=96.62 E-value=0.0088 Score=56.47 Aligned_cols=48 Identities=19% Similarity=0.299 Sum_probs=37.0
Q ss_pred HHHHHHhhhCC-CCC-CCccceeeecCCCccccccccCCccccCCCCCCceeEEEEecC
Q 028903 146 IEKRIADFTFI-PME-HGEGIQVLHYEVGQKYDAHYDYFLDEFNTKNGGQRMATLLMYL 202 (202)
Q Consensus 146 L~~Ri~~~tgl-~~~-~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
+.+-++.++|+ ++. ..-.+++.+|++|++|.+|.|.+ +.|..|+++||
T Consensus 106 Fr~~Ls~iTGi~~Lsg~~~D~~~a~Y~~G~fL~~H~D~~---------~~RrvS~VLYL 155 (633)
T 3kt7_A 106 YRDFFGYVTKAGKLSGSKTDMSINTYTKGCHLLTHDDVI---------GSRRISFILYL 155 (633)
T ss_dssp HHHHHHHHHTCCCCCSSCCCEEEEEECTTCEEEEECCCC---------TTEEEEEEEEC
T ss_pred HHHHHHHHhCCcccCCCceeEEEEEeCCCCeeeecCCCC---------CCeEEEEEEEc
Confidence 34456678898 453 23358999999999999999953 45999999997
No 6
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=95.99 E-value=0.11 Score=43.18 Aligned_cols=90 Identities=16% Similarity=0.178 Sum_probs=58.0
Q ss_pred CEEEEcCCCCHHHHHHHHHHhc--CCcccceeecCCCCcccccceeecceeEeCC--------------CCcHHHHHHHH
Q 028903 85 RAFVYHNFLSKAECEYLIDLAK--PYMVKSTVVDSKTGQSKDSRVRTSSGTFLKR--------------GQDRIIRGIEK 148 (202)
Q Consensus 85 ~I~l~~dfLs~eEc~~Li~lA~--~~l~~S~V~~~~~g~~~~s~~RtS~~awL~~--------------~~d~vv~~L~~ 148 (202)
-+.+++|||+++|.+.|.+... -.+....... -|+..... |. .+|+.. .-.+.+..|.+
T Consensus 41 gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~--~g~~~~~~-R~--~~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~~ 115 (238)
T 2iuw_A 41 RVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQP-RL--TAWYGELPYTYSRITMEPNPHWHPVLRTLKN 115 (238)
T ss_dssp EEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECS-SE--EEEEECCCTTSCHHHHCCBSSCCHHHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHHHHHhCCCccCceec--CCcccccC-Ce--eEEcCCCccccCCcccCCCCCCCHHHHHHHH
Confidence 4899999999999999988753 2333322211 12222221 21 234431 11367788888
Q ss_pred HHHhhhCCCCCCCccceeeecCCCc-cccccccCC
Q 028903 149 RIADFTFIPMEHGEGIQVLHYEVGQ-KYDAHYDYF 182 (202)
Q Consensus 149 Ri~~~tgl~~~~~E~lQv~rY~~Gg-~Y~~H~D~f 182 (202)
++++.+|.+ .+.+-|..|..|+ .-.+|.|.-
T Consensus 116 ~~~~~~g~~---~n~~LvN~Y~~G~d~i~~H~D~~ 147 (238)
T 2iuw_A 116 RIEENTGHT---FNSLLCNLYRNEKDSVDWHSDDE 147 (238)
T ss_dssp HHHHHHSCC---CCEEEEEEECSTTCCEEEECCCC
T ss_pred HHHHHhCCC---CCEEEEEEECCCCCceeCCcCCh
Confidence 888887753 3456788899997 999999963
No 7
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=95.69 E-value=0.14 Score=41.51 Aligned_cols=96 Identities=15% Similarity=0.088 Sum_probs=62.6
Q ss_pred EeeeCCCEEEEcCCCCHHHHHHHHHHhc--CCc---ccceeecCCCCcccccceeecceeEeCCC---------------
Q 028903 79 IVAWEPRAFVYHNFLSKAECEYLIDLAK--PYM---VKSTVVDSKTGQSKDSRVRTSSGTFLKRG--------------- 138 (202)
Q Consensus 79 ~LS~~P~I~l~~dfLs~eEc~~Li~lA~--~~l---~~S~V~~~~~g~~~~s~~RtS~~awL~~~--------------- 138 (202)
.|-.+-..+.|.+||+++|++.|.+.-. ..+ +...+.- -|+..... |. .+|....
T Consensus 5 ~~~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~--~gk~~~~p-R~--~~wyg~~~~~Y~Ysg~~~~~~p 79 (204)
T 3s57_A 5 HIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQV--FGKWHSVP-RK--QATYGDAGLTYTFSGLTLSPKP 79 (204)
T ss_dssp EEEETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEE--TTEEEECS-SE--EEEEECTTCCEEETTEEECCEE
T ss_pred eeeeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEE--CCeEeccC-cE--EEEECCCCCCcccCCCcccCCC
Confidence 3455666788999999999999987643 344 3222321 13322221 21 2444321
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCCccceeeecCCCc-cccccccCC
Q 028903 139 QDRIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQ-KYDAHYDYF 182 (202)
Q Consensus 139 ~d~vv~~L~~Ri~~~tgl~~~~~E~lQv~rY~~Gg-~Y~~H~D~f 182 (202)
-.+.+..|.+++++.+|.+. +..-+..|.+|+ .-.+|.|.-
T Consensus 80 wp~~L~~l~~~~~~~~g~~~---n~~LvN~Y~~G~d~i~~H~D~~ 121 (204)
T 3s57_A 80 WIPVLERIRDHVSGVTGQTF---NFVLINRYKDGSDHICEHRDDE 121 (204)
T ss_dssp CCHHHHHHHHHHHHHHCCCC---SEEEEEEESSTTCCEEEECCCC
T ss_pred CCHHHHHHHHHHHHHhCCCC---ceeEEEEECCCCCcccceecCh
Confidence 14788999999998888543 345788899999 899999974
No 8
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=94.90 E-value=0.13 Score=45.21 Aligned_cols=97 Identities=18% Similarity=0.131 Sum_probs=52.5
Q ss_pred eCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCcccccceeec---------cee-----EeCCCCcHHHHHHH
Q 028903 82 WEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQSKDSRVRTS---------SGT-----FLKRGQDRIIRGIE 147 (202)
Q Consensus 82 ~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~~~~s~~RtS---------~~a-----wL~~~~d~vv~~L~ 147 (202)
.-|=+.+++|||+++|.+.|++.....-.+..+. |....+..|.. ... .+...-.+.+..|.
T Consensus 109 lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~~~~~----~~~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L~~l~ 184 (345)
T 3tht_A 109 LPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQN----SQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFL 184 (345)
T ss_dssp CCTTEEEETTCSCHHHHHHHHTTCC--------------------CEEECCC------------------CCCHHHHHHH
T ss_pred CCCceEEEcCcCCHHHHHHHHHhcccCCcccccc----CcccccCceEEEECCcccccccccccCCCCCcCcCHHHHHHH
Confidence 3456999999999999999987654211111111 11111111111 000 00111235577888
Q ss_pred HHHHhhhCCCCCCCccceeeecCCCccccccccCCc
Q 028903 148 KRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDYFL 183 (202)
Q Consensus 148 ~Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~ 183 (202)
+|+... ++.....+..-|..|.+|+.-.+|.|.-.
T Consensus 185 ~r~~~~-~~~~~~~n~~lvN~Y~~G~~I~~H~D~~~ 219 (345)
T 3tht_A 185 EKWLRK-GYIKHKPDQMTINQYEPGQGIPAHIDTHS 219 (345)
T ss_dssp HHHHHH-TSCSSCCSEEEEEEECTTCCEEEECCCTT
T ss_pred HHHHhc-ccCCCCCCEEEEEEecCCCCEeeccCCch
Confidence 887642 33223445677888999999999999853
No 9
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=88.56 E-value=1.6 Score=35.58 Aligned_cols=41 Identities=20% Similarity=0.205 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccC
Q 028903 141 RIIRGIEKRIADFTFIPMEHGEGIQVLHYEVGQKYDAHYDY 181 (202)
Q Consensus 141 ~vv~~L~~Ri~~~tgl~~~~~E~lQv~rY~~Gg~Y~~H~D~ 181 (202)
+.+..|.+|+....|++....+..-+..|.+|+.-.+|.|.
T Consensus 84 ~~L~~l~~~~~~~~g~~~~~pn~~LvN~Y~~G~~i~~H~D~ 124 (211)
T 3i3q_A 84 QSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDK 124 (211)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCCEEEEEEECTTCCEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCcCCCEEEEEEEcCCCCcccccCC
Confidence 47888999998888875444456778889999999999995
No 10
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}
Probab=72.11 E-value=1.3 Score=37.81 Aligned_cols=31 Identities=13% Similarity=-0.015 Sum_probs=24.5
Q ss_pred eEEEeeeCCCEEEEcCCCCHHHHHHHHHHhcC
Q 028903 76 WTEIVAWEPRAFVYHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 76 kvE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~ 107 (202)
.++....+-+ +++.|+|+++||+.+.+....
T Consensus 39 qi~~f~~dGy-vvi~~~ls~eev~~lr~~i~~ 69 (310)
T 3emr_A 39 QLDSYEKNGF-LQIKNFFSEDEVIDMQKAIFE 69 (310)
T ss_dssp HHHHHHHHSE-EEETTCSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCE-EEccCCCCHHHHHHHHHHHHH
Confidence 3445666776 669999999999999998764
No 11
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=72.09 E-value=1.7 Score=35.76 Aligned_cols=30 Identities=7% Similarity=0.073 Sum_probs=23.7
Q ss_pred EEEeeeCCCEEEEcCCCCHHHHHHHHHHhcC
Q 028903 77 TEIVAWEPRAFVYHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 77 vE~LS~~P~I~l~~dfLs~eEc~~Li~lA~~ 107 (202)
++.+..+-+ +++.|||+++||+.+.+....
T Consensus 25 ~~~f~~dGy-vvl~~~l~~e~v~~l~~~~~~ 54 (288)
T 2rdq_A 25 DSFYEEHGY-LFLRNVLDRDLVKTVAEQMRE 54 (288)
T ss_dssp HHHHHHHSE-EEECSCSCHHHHHHHHHHHHH
T ss_pred HHHHHhCCE-EEEeCCCCHHHHHHHHHHHHH
Confidence 344556666 568999999999999998764
No 12
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=70.87 E-value=9 Score=31.84 Aligned_cols=27 Identities=7% Similarity=-0.169 Sum_probs=20.6
Q ss_pred eeeCCCEEEEcCCCCHHHHHHHHHHhcC
Q 028903 80 VAWEPRAFVYHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 80 LS~~P~I~l~~dfLs~eEc~~Li~lA~~ 107 (202)
+..+-+ +++.++++++||+.+.+....
T Consensus 18 f~~dGy-vvl~~~l~~e~v~~l~~~~~~ 44 (313)
T 2fct_A 18 FEKNGF-IGPFDAYSPEEMKETWKRTRL 44 (313)
T ss_dssp HHHHSE-EEEEESSCHHHHHHHHHHHHH
T ss_pred HHhCCE-EECCCCCCHHHHHHHHHHHHH
Confidence 344455 578999999999999876643
No 13
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=66.40 E-value=8.1 Score=31.14 Aligned_cols=18 Identities=17% Similarity=0.104 Sum_probs=16.0
Q ss_pred cceeeecCCCcccccccc
Q 028903 163 GIQVLHYEVGQKYDAHYD 180 (202)
Q Consensus 163 ~lQv~rY~~Gg~Y~~H~D 180 (202)
...+..|.+|++|++|.|
T Consensus 104 ~~W~~~~~~G~~~~~H~H 121 (216)
T 2rg4_A 104 DIWINILPEGGVHGSHIH 121 (216)
T ss_dssp EEEEEEECTTCCEEEECC
T ss_pred eEEEEEcCCCCcccCccC
Confidence 467889999999999987
No 14
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=59.29 E-value=7.4 Score=28.58 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=39.8
Q ss_pred HHHHHHHHhcC-CcccceeecCCCCcccccceeecceeEeCCC---------CcHHHHHHHHHHHhhhCCCCCCCcccee
Q 028903 97 ECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRG---------QDRIIRGIEKRIADFTFIPMEHGEGIQV 166 (202)
Q Consensus 97 Ec~~Li~lA~~-~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~---------~d~vv~~L~~Ri~~~tgl~~~~~E~lQv 166 (202)
-.+.|++.++. ++..++|..+-.|-......++++...++.+ ..+-++++-.++.++..-.+-..|+.+|
T Consensus 31 L~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v~~Glvt~e~V~V 110 (114)
T 1o51_A 31 LFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNIDFDGLVFTADVNV 110 (114)
T ss_dssp HHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCCCCSEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 45667777653 6778888876555444444555443333322 2456778888888877644456778888
Q ss_pred eecC
Q 028903 167 LHYE 170 (202)
Q Consensus 167 ~rY~ 170 (202)
++|+
T Consensus 111 ~r~~ 114 (114)
T 1o51_A 111 VKMG 114 (114)
T ss_dssp CC--
T ss_pred EecC
Confidence 8884
No 15
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*
Probab=40.78 E-value=21 Score=30.20 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=22.2
Q ss_pred EeeeCCCEEEEcCCCCHHHHHHHHHHhcCC
Q 028903 79 IVAWEPRAFVYHNFLSKAECEYLIDLAKPY 108 (202)
Q Consensus 79 ~LS~~P~I~l~~dfLs~eEc~~Li~lA~~~ 108 (202)
....+-+ +++.++|+++||+.+.+.....
T Consensus 19 ~f~~~Gy-v~i~~~l~~~~v~~l~~~i~~~ 47 (319)
T 3gja_A 19 RFERDGY-IGPVKIFEPEEMTRRWNIIRRQ 47 (319)
T ss_dssp HHHHHSE-EEEEESSCHHHHHHHHHHHHHH
T ss_pred HHHHCCE-EECcCCCCHHHHHHHHHHHHHH
Confidence 3445555 5689999999999998877653
No 16
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=31.01 E-value=28 Score=25.94 Aligned_cols=77 Identities=19% Similarity=0.109 Sum_probs=42.1
Q ss_pred HHHHHHHHhcC-CcccceeecCCCCcccccceeecceeEeCCC---------CcHHHHHHHHHHHhhhCCCCCCCcccee
Q 028903 97 ECEYLIDLAKP-YMVKSTVVDSKTGQSKDSRVRTSSGTFLKRG---------QDRIIRGIEKRIADFTFIPMEHGEGIQV 166 (202)
Q Consensus 97 Ec~~Li~lA~~-~l~~S~V~~~~~g~~~~s~~RtS~~awL~~~---------~d~vv~~L~~Ri~~~tgl~~~~~E~lQv 166 (202)
-.+.|++.++. ++..++|..+..|-......++.+...++.+ ..+-++++-.++..+..-.+-..|+.++
T Consensus 27 L~~~Iv~~a~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPVvIe~Vd~~eki~~~l~~l~~lv~~GlVt~e~Vev 106 (127)
T 2dcl_A 27 LYKVIVEKLREMGIAGATVYRGIYGFGKKSRVHSSDVIRLSTDLPIIVEVVDRGHNIEKVVNVIKPMIKDGMITVEPTIV 106 (127)
T ss_dssp HHHHHHHHHHHTTCSCEEEEECSEEEC--------------CCCEEEEEEEEEHHHHHHHHHHHTTTCSSSEEEEEECEE
T ss_pred HHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEecceeeecCCCCCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 46677777754 6777888876544333334444443333322 2356777777777777644456788999
Q ss_pred eecCCCc
Q 028903 167 LHYEVGQ 173 (202)
Q Consensus 167 ~rY~~Gg 173 (202)
.+|+...
T Consensus 107 ~~~~~~~ 113 (127)
T 2dcl_A 107 LWVGTQE 113 (127)
T ss_dssp EECCSSC
T ss_pred EEecCCC
Confidence 9996643
No 17
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=29.39 E-value=38 Score=23.32 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028903 86 AFVYHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 86 I~l~~dfLs~eEc~~Li~lA~~ 107 (202)
-++|.+|.|.+|-+.+.+.|+.
T Consensus 23 g~Ly~~F~s~~efe~~~~yA~e 44 (80)
T 3dgp_A 23 GSLYSDFETSQEYNLLSKYAQD 44 (80)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 4789999999999999999984
No 18
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=22.78 E-value=57 Score=23.77 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=20.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028903 86 AFVYHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 86 I~l~~dfLs~eEc~~Li~lA~~ 107 (202)
-++|.+|.|.+|-+.+.+.|+.
T Consensus 51 G~LY~dF~s~~efe~v~~yA~e 72 (108)
T 3dom_A 51 GSLYSDFETSQEYNLLSKYAQD 72 (108)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 5789999999999999999984
No 19
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=22.05 E-value=12 Score=32.61 Aligned_cols=96 Identities=7% Similarity=-0.075 Sum_probs=49.2
Q ss_pred eCCCEEEEcCCCCHHHHHHHHHHhcCCcccceeecCCCCc---ccccceeecceeEeCCC---CcHHHHHHHHHHHhhhC
Q 028903 82 WEPRAFVYHNFLSKAECEYLIDLAKPYMVKSTVVDSKTGQ---SKDSRVRTSSGTFLKRG---QDRIIRGIEKRIADFTF 155 (202)
Q Consensus 82 ~~P~I~l~~dfLs~eEc~~Li~lA~~~l~~S~V~~~~~g~---~~~s~~RtS~~awL~~~---~d~vv~~L~~Ri~~~tg 155 (202)
.+-+ .++.|+++++|++.|++..+.....+.+.... .. .....+|+....+=.-. -+.+..++-.-+..++|
T Consensus 39 ~eGY-Lvlk~vFs~eEv~~l~~el~~~~~d~~~~k~~-~~i~~~~s~~lrs~~H~~~~f~~h~~s~l~~rll~vl~~LlG 116 (344)
T 3nnf_A 39 EKGY-CQIKKIFDFSAIKTIQKTLDQAKQESQISKEK-VTLKLGGIDDIDTNDHAYDLVKYDFVSSFIQEKLALLNYITG 116 (344)
T ss_dssp HHSE-EEETTCSCHHHHHHHHHHHHHHHHHCCCCSHH-HHHHTTSCCCCBCSEEEECSSCHHHHHHHHGGGHHHHHHHHT
T ss_pred cCce-EEEcCCCCHHHHHHHHHHHHHHhhchhhhccc-ceecCCCccchhcccccchhHHHHHHHHHHHHHHHHHHHHhC
Confidence 3555 56899999999999999886432222221100 00 01234453322210000 01233333333445566
Q ss_pred CCCCCCccceeeecCCC-cccccccc
Q 028903 156 IPMEHGEGIQVLHYEVG-QKYDAHYD 180 (202)
Q Consensus 156 l~~~~~E~lQv~rY~~G-g~Y~~H~D 180 (202)
-+.--. .-+..++.+| --|.||.|
T Consensus 117 ~el~i~-qs~~fe~kPG~KGFpWH~D 141 (344)
T 3nnf_A 117 KNLMIM-HNALFSVEPNHKGLPWHVG 141 (344)
T ss_dssp SCEEEE-EEEEEEECBTCCBSCSBCT
T ss_pred Cceeee-ecceEeeCCCCCCCCceec
Confidence 554222 2356777775 56899999
No 20
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=21.56 E-value=63 Score=26.17 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=19.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcC
Q 028903 83 EPRAFVYHNFLSKAECEYLIDLAKP 107 (202)
Q Consensus 83 ~P~I~l~~dfLs~eEc~~Li~lA~~ 107 (202)
+-+ +++.|||+++||+.+.+.+..
T Consensus 15 dGy-vvl~~~l~~e~v~~l~~~~~~ 38 (291)
T 2opw_A 15 DGF-LVLEGFLSAEECVAMQQRIGE 38 (291)
T ss_dssp HSE-EEETTSSCHHHHHHHHHHHHH
T ss_pred CCE-EEecCCCCHHHHHHHHHHHHH
Confidence 444 679999999999999988754
Done!