BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028905
         (202 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
 pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
 pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
          Length = 854

 Score = 28.1 bits (61), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 25/43 (58%)

Query: 19  QEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSAR 61
           +EK   +   L+++ +E+A L +  A L+A+ E   EILR  R
Sbjct: 422 KEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLR 464


>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
 pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
           Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
           Hp0859)
          Length = 362

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%)

Query: 39  LEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLP 76
           L D E+ +K  L H+  I +  R  G L  +   KP+P
Sbjct: 307 LYDLESGIKDYLPHIHAIFKGQRAKGELNSKLEGKPIP 344


>pdb|1UPQ|A Chain A, Crystal Structure Of The Pleckstrin Homology (Ph) Domain
           Of Pepp1
 pdb|1UPR|A Chain A, Crystal Structure Of The Pepp1 Pleckstrin Homology Domain
           In Complex With Inositol 1,3,4,5-Tetrakisphosphate
          Length = 123

 Score = 26.9 bits (58), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 83  DDTDVDDWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCF 142
           D + +  W  R+ VL G C+F+Y  S + S   S +L         P   R        F
Sbjct: 21  DSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGR-----RF 75

Query: 143 YILTRH-GLRIECSSISKIQ-VYSWLSALQTDCKL---DY-EPSTP 182
                H G+R    +   ++ +  WL AL    +    DY +P +P
Sbjct: 76  TFTAEHPGMRTYVLAADTLEDLRGWLRALGRASRAEGDDYGQPRSP 121


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,990,562
Number of Sequences: 62578
Number of extensions: 225259
Number of successful extensions: 591
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 6
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)