BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028905
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P78314|3BP2_HUMAN SH3 domain-binding protein 2 OS=Homo sapiens GN=SH3BP2 PE=1 SV=2
Length = 561
Score = 37.0 bits (84), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%)
Query: 90 WLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG 149
W RF+++H C++++ ST SPQ + LS V T N + +++
Sbjct: 46 WPLRFVIIHKRCVYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKH 105
Query: 150 LRIECSSISKIQVYSWLSALQTD 172
S+ S+ + SW++ L+ +
Sbjct: 106 RTWFFSASSEEERKSWMALLRRE 128
>sp|Q06649|3BP2_MOUSE SH3 domain-binding protein 2 OS=Mus musculus GN=Sh3bp2 PE=1 SV=1
Length = 559
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 41/89 (46%)
Query: 90 WLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVVEVASLPSITRENGEMQYCFYILTRHG 149
W RF+++H CI+++ ST SPQ + LS V T N + +++
Sbjct: 46 WPLRFVIIHKRCIYYFKSSTSASPQGAFSLSGYNRVMRAAEETTSNNVFPFKIIHISKKH 105
Query: 150 LRIECSSISKIQVYSWLSALQTDCKLDYE 178
S+ S+ + SW++ ++ + +E
Sbjct: 106 RTWFFSASSEDERKSWMAFVRREIGHFHE 134
>sp|Q9HND8|VATI_HALSA V-type ATP synthase subunit I OS=Halobacterium salinarum (strain
ATCC 700922 / JCM 11081 / NRC-1) GN=atpI PE=3 SV=1
Length = 722
Score = 32.3 bits (72), Expect = 2.0, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 1 MLNMFSLRGLPWVSSSD-GQEKV---ELTATELESLRSELADLEDREAHLKAQLEHVDEI 56
++ + SL+ L VS D G ++ + TELES+R E DL+DR + L L V E
Sbjct: 60 LVTVRSLKSLLDVSEGDAGPTRIVTDDALDTELESIRVEATDLDDRRSELTDDLRAVIER 119
Query: 57 LRSA 60
+ +A
Sbjct: 120 IDAA 123
>sp|Q75ZQ2|URED_HALMA Urease accessory protein UreD OS=Haloarcula marismortui (strain
ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=ureD
PE=3 SV=1
Length = 299
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 89 DWLPRFIVLHGSCIFFYLLSTDLSPQDSTVLSDVV 123
D++P +LH + LS DL+P + V+SDVV
Sbjct: 131 DYVPEPTILHADSRYLQELSVDLAPGATAVVSDVV 165
>sp|Q835R8|GRPE_ENTFA Protein GrpE OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=grpE PE=3 SV=1
Length = 179
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 18 GQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPG 77
G +VE+ ATE+E+L++EL+++ED+ +A++ ++ ++ R L +R R + L
Sbjct: 22 GVSEVEVEATEIENLKAELSEMEDKFLRARAEIANMSNRNKNER---ELLVRYRSQDLGK 78
Query: 78 EP-PPIDD 84
+ P ID+
Sbjct: 79 KILPSIDN 86
>sp|Q9LS42|CASP_ARATH Protein CASP OS=Arabidopsis thaliana GN=CASP PE=1 SV=2
Length = 689
Score = 31.6 bits (70), Expect = 3.9, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 4 MFSLRGLPWVSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDE 55
+F LR ++ Q +V L E+E ++ L LE + HL++QL+ +E
Sbjct: 240 LFELRAQSDEETAGKQSEVSLLMDEVERAQTRLLTLEREKGHLRSQLQTANE 291
>sp|Q9NX02|NALP2_HUMAN NACHT, LRR and PYD domains-containing protein 2 OS=Homo sapiens
GN=NLRP2 PE=1 SV=1
Length = 1062
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 13/88 (14%)
Query: 13 VSSSDGQEKVELTATELESLRSELADLEDREAHLKAQL-EHVDEILRSARLSGYLYIRTR 71
V +DG++ VE+ T +S E+A L+ E + L E + +R A L + +
Sbjct: 47 VDKADGKQLVEILTTHCDSYWVEMASLQVFEKMHRMDLSERAKDEVREAALKSF----NK 102
Query: 72 WKPLP-----GEPPPIDDTDVDDWLPRF 94
KPL E PP+ DVD+ L RF
Sbjct: 103 RKPLSLGITRKERPPL---DVDEMLERF 127
>sp|O58734|SYP_PYRHO Proline--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC 700860 /
DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=proS PE=3
SV=2
Length = 480
Score = 31.2 bits (69), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 37 ADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPG 77
AD ED E +K LE D ++R L+ + R W PG
Sbjct: 166 ADFEDAERQIKEDLEIFDNLMRKLALAYIISKRPEWDKFPG 206
>sp|A7I3Q0|RF1_CAMHC Peptide chain release factor 1 OS=Campylobacter hominis (strain
ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=prfA
PE=3 SV=1
Length = 355
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 13 VSSSDGQEKVELTATELESLRSELADLEDREAHLKAQLEHVDEIL---RSARLSGYLYIR 69
V++ DG+ + + ++ L++ L DL+++E K Q E D++ RS R+ Y Y +
Sbjct: 251 VTNQDGKSQHKNKEAAMKVLKARLYDLQEKERKAKEQSERKDQVGTGDRSGRIRTYNYPQ 310
Query: 70 TR 71
R
Sbjct: 311 NR 312
>sp|O33926|GYRA_THEMA DNA gyrase subunit A OS=Thermotoga maritima (strain ATCC 43589 /
MSB8 / DSM 3109 / JCM 10099) GN=gyrA PE=3 SV=2
Length = 804
Score = 30.4 bits (67), Expect = 7.3, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 24 LTATELESLRSELADLEDREAHLKAQLEHVDEILRSARLSGYLYIRTRWKPLPGEPPPID 83
LT+ E+E+L++E +DL + + +K LE DE ++ +LY++ ++ G+P +
Sbjct: 428 LTSLEIENLQNEYSDLVRKISEVKEILEK-DEKVKEIMKKEFLYLKQQY----GDPRRTE 482
Query: 84 DTD 86
TD
Sbjct: 483 VTD 485
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,610,882
Number of Sequences: 539616
Number of extensions: 2902591
Number of successful extensions: 10487
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10465
Number of HSP's gapped (non-prelim): 29
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)