BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>028906
MDFRDTMQKVYSWACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYK
ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL
NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI
FTEAHMSEALRAVAKARNLTCY

High Scoring Gene Products

Symbol, full name Information P value
LEW1
AT1G11755 		protein from Arabidopsis thaliana 8.3e-35

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  028906
        (202 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:4010713435 - symbol:LEW1 "LEAF WILTING 1" spec...   377  8.3e-35   1


>TAIR|locus:4010713435 [details] [associations]
            symbol:LEW1 "LEAF WILTING 1" species:3702 "Arabidopsis
            thaliana" [GO:0016765 "transferase activity, transferring alkyl or
            aryl (other than methyl) groups" evidence=IEA] [GO:0006487 "protein
            N-linked glycosylation" evidence=IMP] [GO:0009414 "response to
            water deprivation" evidence=IMP] [GO:0009645 "response to low light
            intensity stimulus" evidence=IMP] [GO:0019408 "dolichol
            biosynthetic process" evidence=IMP] [GO:0030968 "endoplasmic
            reticulum unfolded protein response" evidence=IMP] [GO:0045547
            "dehydrodolichyl diphosphate synthase activity" evidence=IDA]
            InterPro:IPR001441 EMBL:CP002684 GO:GO:0009414 GO:GO:0006487
            GO:GO:0030968 KO:K11778 Gene3D:3.40.1180.10 SUPFAM:SSF64005
            GO:GO:0019408 GO:GO:0009645 IPI:IPI00852261 GO:GO:0045547
            EMBL:BT002021 RefSeq:NP_001077518.1 UniGene:At.10512
            UniGene:At.72667 ProteinModelPortal:Q8H0V2 STRING:Q8H0V2
            PRIDE:Q8H0V2 EnsemblPlants:AT1G11755.1 GeneID:5007686
            KEGG:ath:AT1G11755 OMA:CGGPEPD ProtClustDB:CLSN2692535
            ArrayExpress:Q8H0V2 Genevestigator:Q8H0V2 Uniprot:Q8H0V2
        Length = 254

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 82/195 (42%), Positives = 117/195 (60%)

Query:     1 MDFRDTMQKVYSWACQXXXXXXXXXXXXXHFAVDLWYFALHIACAIESYLISSGILKRYK 60
             MD   +M+ + +W  Q             H  V LWY    I  AIESY I+ G+ K+Y 
Sbjct:     1 MDSNQSMRLLSAWIGQIGDLGLNLLWRFIHIVVSLWYIVSGIFEAIESYAITLGLNKKYG 60

Query:    61 ALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL 120
             ++D++KLR LA+V++ E A  +  V++LLQWL  IGVK V L+D++G+LKKSK+ IL  +
Sbjct:    61 SIDLEKLRCLAVVVDIEAAQDVANVVELLQWLTTIGVKQVGLFDSQGLLKKSKDLILETV 120

Query:   121 NNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180
               + L EE  E ++  D K I LEF S  D KEAV KAAN+L  +Y+K       + E  
Sbjct:   121 PGSMLLEEI-EKDVAPDGKRIALEFISSSDNKEAVMKAANILLQRYLKSSHPEDDKGEDF 179

Query:   181 FTEAHMSEALRAVAK 195
             FTE+H+++ALR V +
Sbjct:   180 FTESHLNDALRVVGE 194


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.401    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      202       189   0.00089  110 3  11 22  0.40    32
                                                     31  0.42    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  162 KB (2096 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.59u 0.11s 16.70t   Elapsed:  00:00:01
  Total cpu time:  16.59u 0.11s 16.70t   Elapsed:  00:00:01
  Start:  Thu May  9 21:23:27 2013   End:  Thu May  9 21:23:28 2013

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