Query 028906
Match_columns 202
No_of_seqs 29 out of 31
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 06:40:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vg0_A Short-chain Z-isoprenyl 99.0 4.7E-10 1.6E-14 95.9 8.8 128 66-194 2-173 (227)
2 2vg3_A Undecaprenyl pyrophosph 99.0 4.8E-10 1.6E-14 99.2 7.9 124 66-194 55-223 (284)
3 3qas_B Undecaprenyl pyrophosph 99.0 6.2E-10 2.1E-14 96.9 7.5 124 66-194 17-185 (253)
4 1f75_A Undecaprenyl pyrophosph 99.0 1.1E-09 3.8E-14 95.0 8.1 124 66-194 20-188 (249)
5 2d2r_A Undecaprenyl pyrophosph 98.8 1.3E-09 4.5E-14 94.4 4.0 123 66-194 15-182 (245)
6 3sgv_B Undecaprenyl pyrophosph 98.2 1.6E-06 5.6E-11 75.7 6.3 128 62-194 13-185 (253)
7 4h8e_A Undecaprenyl pyrophosph 98.1 3E-06 1E-10 74.1 6.0 128 62-194 19-192 (256)
8 3ugs_B Undecaprenyl pyrophosph 97.6 0.00017 5.7E-09 62.1 8.6 114 65-190 5-163 (225)
9 2cz4_A Hypothetical protein TT 32.8 47 0.0016 25.1 4.0 87 50-160 8-94 (119)
10 3b0c_W CENP-W, centromere prot 32.6 17 0.00058 25.4 1.4 45 149-193 25-70 (76)
11 1twu_A Hypothetical protein YY 28.1 91 0.0031 21.7 4.7 29 67-100 78-106 (139)
12 2w84_A Peroxisomal membrane pr 27.3 35 0.0012 24.5 2.2 18 181-198 47-64 (70)
13 1dlw_A Hemoglobin; oxygen stor 26.1 85 0.0029 22.4 4.3 38 150-192 7-44 (116)
14 1n1j_A NF-YB; histone-like PAI 25.1 16 0.00056 26.2 0.2 49 148-196 29-78 (93)
15 3rri_A Glyoxalase/bleomycin re 25.1 1.1E+02 0.0038 20.9 4.6 29 67-100 68-96 (135)
16 2ns6_A Mobilization protein A; 24.1 31 0.001 28.1 1.7 24 140-163 4-27 (185)
17 3ixr_A Bacterioferritin comigr 20.2 1.7E+02 0.0059 21.8 5.2 45 59-111 78-122 (179)
No 1
>2vg0_A Short-chain Z-isoprenyl diphosphate synthetase; peptidoglycan synthesis, cell WALL biogenesis/degradation, secreted, cell shape; HET: GPP; 1.7A {Mycobacterium tuberculosis} PDB: 2vfw_A* 2vg1_A*
Probab=99.05 E-value=4.7e-10 Score=95.93 Aligned_cols=128 Identities=16% Similarity=0.253 Sum_probs=92.1
Q ss_pred CcceEEEEEeccc--------c-------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH---HHhh-------
Q 028906 66 KLRYLAIVIESEE--------A-------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---ILGK------- 119 (202)
Q Consensus 66 kl~~LaiVvdsee--------a-------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---l~~~------- 119 (202)
-|+|+||+.|... - .-+.++.+++.||..+||++|+||+ ..+.+|+.++. +|+-
T Consensus 2 iP~HvAiImDGN~RwA~~~g~l~~~~GH~~G~~~l~~i~~~c~~~GI~~lTlYaFSteN~kRp~~Ev~~Lm~l~~~~l~~ 81 (227)
T 2vg0_A 2 LPRHIAVLCDGNRRWARSAGYDDVSYGYRMGAAKIAEMLRWCHEAGIELATVYLLSTENLQRDPDELAALIEIITDVVEE 81 (227)
T ss_dssp CCSEEEEECCCHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEecCChHHHHHcCCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeecccccCCCHHHHHHHHHHHHHHHHH
Confidence 3789999999732 1 2468999999999999999999999 59999999852 2222
Q ss_pred -cccCC-----------ccccc------ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchhc
Q 028906 120 -LNNAT-----------LFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKIF 181 (202)
Q Consensus 120 -~~n~~-----------~~~~a------N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~f 181 (202)
+..++ .+|.. .-...+..+.+|+|++++.-+||+.|+.|++.+++++.++.-+.++. ...+
T Consensus 82 ~~~~~~~vrv~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eI~~A~r~l~~~v~~g~l~~~~~-~~~I 160 (227)
T 2vg0_A 82 ICAPANHWSVRTVGDLGLIGEEPARRLRGAVESTPEVASFHVNVAVGYGGRREIVDAVRALLSKELANGATAEEL-VDAV 160 (227)
T ss_dssp HTCTTTCCEEEEESCGGGSCHHHHHHHHHHHHTSCSSCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCHHHH-HHHC
T ss_pred HhccccCeEEEecCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhHh-hccC
Confidence 21111 11110 01133567889999999999999999999999999987654322111 2248
Q ss_pred chHhHHHHHHHhc
Q 028906 182 TEAHMSEALRAVA 194 (202)
Q Consensus 182 TEadm~eALkaVG 194 (202)
||..+++-|...+
T Consensus 161 ~e~~i~~~L~t~~ 173 (227)
T 2vg0_A 161 TVEGISENLYTSG 173 (227)
T ss_dssp CHHHHHHHSTTTT
T ss_pred CHHHHHHhhccCC
Confidence 9999999886544
No 2
>2vg3_A Undecaprenyl pyrophosphate synthetase; transferase, cell WALL biogenesis/degradation, cell cycle, P transferase; HET: GPP; 1.8A {Mycobacterium tuberculosis} PDB: 2vg2_A* 2vg4_A
Probab=99.02 E-value=4.8e-10 Score=99.25 Aligned_cols=124 Identities=17% Similarity=0.213 Sum_probs=90.0
Q ss_pred CcceEEEEEecc------------cc--cChHHHHHHHHHHHHhccceeEEec-ccchhhhchh---HHHhhcc------
Q 028906 66 KLRYLAIVIESE------------EA--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKE---SILGKLN------ 121 (202)
Q Consensus 66 kl~~LaiVvdse------------ea--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e---~l~~~~~------ 121 (202)
-|+|+||+.|.. +. .-..++.+++.||..+||++|+||+ ....+|+.++ .||+-++
T Consensus 55 iP~HVAIIMDGN~RwAk~rgl~r~~GH~~G~~~l~~iv~~c~~lGI~~LTlYaFStENwkRp~~EV~~Lm~L~~~~l~~~ 134 (284)
T 2vg3_A 55 LPNHVAIVMDGNGRWATQRGLARTEGHKMGEAVVIDIACGAIELGIKWLSLYAFSTENWKRSPEEVRFLMGFNRDVVRRR 134 (284)
T ss_dssp SCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEETTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCChHHHHHcCCchhHHHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 378999999973 11 2468999999999999999999999 5666777766 2322111
Q ss_pred ---------------cCCccccc------ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906 122 ---------------NATLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 122 ---------------n~~~~~~a------N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
+...+|.. .....+..+.+|+|++++.-+||+.|++|++.|++++..+.-+.+ -
T Consensus 135 ~~~l~~~~vrvrviG~~~~lp~~~~~~i~~ae~~T~~n~~l~Lnia~~YgGR~EIv~A~r~la~~v~~g~l~~~-----d 209 (284)
T 2vg3_A 135 RDTLKKLGVRIRWVGSRPRLWRSVINELAVAEEMTKSNDVITINYCVNYGGRTEITEATREIAREVAAGRLNPE-----R 209 (284)
T ss_dssp HHHHHHTTEEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHHHHTTSSCGG-----G
T ss_pred HHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChH-----H
Confidence 11122220 012335678899999999999999999999999999876654332 2
Q ss_pred cchHhHHHHHHHhc
Q 028906 181 FTEAHMSEALRAVA 194 (202)
Q Consensus 181 fTEadm~eALkaVG 194 (202)
+||..+++-|..-+
T Consensus 210 I~e~~i~~~L~t~~ 223 (284)
T 2vg3_A 210 ITESTIARHLQRPD 223 (284)
T ss_dssp CCHHHHHHHSSSTT
T ss_pred CCHHHHHHHhccCC
Confidence 89999998886544
No 3
>3qas_B Undecaprenyl pyrophosphate synthase; alpha-helix, isoprenoid biosynthesis, transferase; 1.70A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 1x09_A* 1x08_A*
Probab=99.00 E-value=6.2e-10 Score=96.93 Aligned_cols=124 Identities=15% Similarity=0.187 Sum_probs=83.6
Q ss_pred CcceEEEEEeccc------------cc--ChHHHHHHHHHHHHhccceeEEecc-cchhhhchh--------------HH
Q 028906 66 KLRYLAIVIESEE------------AY--HIPAVIQLLQWLVDIGVKHVCLYDA-EGILKKSKE--------------SI 116 (202)
Q Consensus 66 kl~~LaiVvdsee------------a~--~~~kv~~Ll~Wl~~iGVk~v~lYD~-~GvLKks~e--------------~l 116 (202)
+|+|+||+.|..- .| -+.++.+++.||..+||++|+||+- .-.+|+.++ ..
T Consensus 17 ~~~HVAiImDGN~RwAk~~gl~r~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFStENwkRp~~EV~~Lm~l~~~~l~~~ 96 (253)
T 3qas_B 17 GCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWALDSE 96 (253)
T ss_dssp CCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECCCC-----------------CTHHHHH
T ss_pred CCCEEEEEecCCHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHCCCCEEEEEEecCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 4589999999832 11 4689999999999999999999993 233455432 21
Q ss_pred Hhhcc----------cCCccccc------ccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906 117 LGKLN----------NATLFEEA------GESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 117 ~~~~~----------n~~~~~~a------N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
++++. +...+|.. .-...+..+.+|+|++++.-+||+.|++|++.+++++..+.-+.++
T Consensus 97 ~~~l~~~~vrlr~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YgGR~EIv~A~r~l~~~v~~g~l~~~~----- 171 (253)
T 3qas_B 97 VKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ----- 171 (253)
T ss_dssp HHHHHHTTCEEEEESCCTTSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHTTSCCGGG-----
T ss_pred HHHHHHCCeEEEEeCChHhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHH-----
Confidence 22221 11222321 0123356788999999999999999999999999998766543333
Q ss_pred cchHhHHHHHHHhc
Q 028906 181 FTEAHMSEALRAVA 194 (202)
Q Consensus 181 fTEadm~eALkaVG 194 (202)
+||..+++-|...+
T Consensus 172 I~e~~i~~~L~t~~ 185 (253)
T 3qas_B 172 IDEEMLNQHVCMHE 185 (253)
T ss_dssp CCHHHHHTTSTTTT
T ss_pred CCHHHHHHhhccCC
Confidence 89999888776544
No 4
>1f75_A Undecaprenyl pyrophosphate synthetase; parallel beta sheet, NEW fold for isoprenoid synthase, peptidoglycan synthesis, transferase; 2.20A {Micrococcus luteus} SCOP: c.101.1.1
Probab=98.97 E-value=1.1e-09 Score=94.99 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=82.7
Q ss_pred CcceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhch-----------hHHHh-
Q 028906 66 KLRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSK-----------ESILG- 118 (202)
Q Consensus 66 kl~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~-----------e~l~~- 118 (202)
-|+|+||+.|..- . .-+.++.+++.||..+||++|+||+ ....+|+.+ +.+-+
T Consensus 20 iP~HVAiImDGN~RwA~~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~~ 99 (249)
T 1f75_A 20 IPKHIAIIMDGNGRWAKQKKMPRIKGHYEGMQTVRKITRYASDLGVKYLTLYAFSTENWSRPKDEVNYLMKLPGDFLNTF 99 (249)
T ss_dssp SCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEC------------CGGGTHHHHHHHHH
T ss_pred CCCEEEEEecCCcHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEEecccccCCCHHHHHHHHHHHHHHHHHH
Confidence 3789999999831 1 2478999999999999999999999 444444443 22222
Q ss_pred --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906 119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
++. + ...+|. ......+..+.+|+|++++.-+||+.|+.|++.++++...+.-+.++
T Consensus 100 ~~~l~~~~vr~~~iG~~~~lp~~~~~~i~~~~~~T~~n~~l~lnia~~YggR~eIv~A~r~l~~~v~~g~l~~~~----- 174 (249)
T 1f75_A 100 LPELIEKNVKVETIGFIDDLPDHTKKAVLEAKEKTKHNTGLTLVFALNYGGRKEIISAVQLIAERYKSGEISLDE----- 174 (249)
T ss_dssp HHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHTTTTCCSCEEEEECSCCHHHHHHHHHHHHHHHHHTTSSCGGG-----
T ss_pred HHHHHHcCeEEEEeCChhhCCHHHHHHHHHHHHhhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChHh-----
Confidence 221 1 112222 01122366788999999999999999999999999998765443322
Q ss_pred cchHhHHHHHHHhc
Q 028906 181 FTEAHMSEALRAVA 194 (202)
Q Consensus 181 fTEadm~eALkaVG 194 (202)
+||..+++-|...|
T Consensus 175 I~e~~i~~~L~t~~ 188 (249)
T 1f75_A 175 ISETHFNEYLFTAN 188 (249)
T ss_dssp CSHHHHGGGSTTTT
T ss_pred CCHHHHHHhhccCC
Confidence 88988888776544
No 5
>2d2r_A Undecaprenyl pyrophosphate synthase; prenyltransferase, transferase; 1.88A {Helicobacter pylori} PDB: 2dtn_A
Probab=98.85 E-value=1.3e-09 Score=94.40 Aligned_cols=123 Identities=17% Similarity=0.170 Sum_probs=81.0
Q ss_pred CcceEEEEEeccc------------c--cChHHHHHHHHHHHHhccceeEEec-ccchhhhch---hHHHh---------
Q 028906 66 KLRYLAIVIESEE------------A--YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSK---ESILG--------- 118 (202)
Q Consensus 66 kl~~LaiVvdsee------------a--~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~---e~l~~--------- 118 (202)
-|+|+||+.|... . .-+.++.+++.||..+||++|+||+ ....+|+.+ +.+|+
T Consensus 15 iP~HVAiImDGN~RwAk~~gl~~~~GH~~G~~~l~~iv~~c~~~GI~~lTlYaFSteNwkRp~~EV~~Lm~l~~~~l~~~ 94 (245)
T 2d2r_A 15 TLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDE 94 (245)
T ss_dssp CCCEEEEECCCHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTTCSEEEEECC----------CHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCchHHHHHCCCChhhhHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 4789999999832 1 1468999999999999999999999 455566664 22322
Q ss_pred --hcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccchh
Q 028906 119 --KLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEKI 180 (202)
Q Consensus 119 --~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~ 180 (202)
++. + ...+|. ......+..+.+|+|++++.-+||+.|++|++.++++... + .+..-
T Consensus 95 ~~~l~~~~vrl~~iG~~~~lp~~~~~~i~~a~~~T~~n~~l~lnia~~YggR~EIv~A~r~i~~~v~~--~----l~~~~ 168 (245)
T 2d2r_A 95 RSTYLDNNIRFRAIGDLEGFSKELRDTILQLENDTRHFKDFTQVLALNYGSKNELSRAFKSLLESPPS--N----ISLLE 168 (245)
T ss_dssp HHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHSCCT--T----GGGCS
T ss_pred HHHHHHcCeEEEEecChhhCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHHHHh--c----CChhh
Confidence 221 1 112222 0011235678899999999999999999999999998655 2 12223
Q ss_pred cchHhHHHHHHHhc
Q 028906 181 FTEAHMSEALRAVA 194 (202)
Q Consensus 181 fTEadm~eALkaVG 194 (202)
+||..+++-|..-|
T Consensus 169 I~e~~i~~~L~t~~ 182 (245)
T 2d2r_A 169 SLENEISNRLDTRN 182 (245)
T ss_dssp CCHHHHHTTSTTTT
T ss_pred CCHHHHHHHhccCC
Confidence 89999888776544
No 6
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=98.21 E-value=1.6e-06 Score=75.69 Aligned_cols=128 Identities=15% Similarity=0.177 Sum_probs=83.0
Q ss_pred ccccCcceEEEEEec--cccc------------ChHHHHHHHHHHHHhccceeEEec-ccchhhhch-----------hH
Q 028906 62 LDIDKLRYLAIVIES--EEAY------------HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSK-----------ES 115 (202)
Q Consensus 62 l~~~kl~~LaiVvds--eea~------------~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~-----------e~ 115 (202)
+...-|+|+||+-|. +=|+ -..++.+.+.||..+||++|+||= ..-.+|+.+ +.
T Consensus 13 ~~~~iP~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~~ 92 (253)
T 3sgv_B 13 LPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSENWNRPAQEVSALMELFVWA 92 (253)
T ss_dssp CCTTCCSEEEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECC-----------CHHHHHHHHTT
T ss_pred cCCCCCCEEEEEecCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhccCCCHHHHHHHHHHHHHH
Confidence 334457899999998 2221 357889999999999999999994 111123322 22
Q ss_pred HHh---hcc----------cCCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccc
Q 028906 116 ILG---KLN----------NATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQ 176 (202)
Q Consensus 116 l~~---~~~----------n~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~ 176 (202)
+-+ ++. +...+|. ..-...+..+.+|+|++...=+|++.|++|++.++.+...+.-+.++
T Consensus 93 l~~~~~~l~~~~vrvr~iGd~~~Lp~~l~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~ia~~v~~g~l~~~~- 171 (253)
T 3sgv_B 93 LDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQ- 171 (253)
T ss_dssp HHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHHHHHHHHHHHHHHTSSCGGG-
T ss_pred HHHHHHHHHHCCeEEEEEeehhhCCHHHHHHHHHHHHHhccCCCeEEEEEecCCCHHHHHHHHHHHHHHHHcCCCChhh-
Confidence 222 221 1122332 11112366788999999999999999999999999998765543322
Q ss_pred cchhcchHhHHHHHHHhc
Q 028906 177 EEKIFTEAHMSEALRAVA 194 (202)
Q Consensus 177 ~~~~fTEadm~eALkaVG 194 (202)
+||..+++-|-.-|
T Consensus 172 ----I~e~~i~~~L~t~~ 185 (253)
T 3sgv_B 172 ----IDEEMLNQHVCMHE 185 (253)
T ss_dssp ----CCHHHHHTTSTTTT
T ss_pred ----CCHHHHHHhhcccC
Confidence 88988887765433
No 7
>4h8e_A Undecaprenyl pyrophosphate synthase; alpha-helix, prenyl transferase, cell WALL biosynthesis, FAR diphosphate binding; HET: FPP; 1.30A {Staphylococcus aureus subsp}
Probab=98.12 E-value=3e-06 Score=74.15 Aligned_cols=128 Identities=18% Similarity=0.268 Sum_probs=88.5
Q ss_pred ccccC-cceEEEEEeccc--c------------cChHHHHHHHHHHHHhccceeEEec-ccchhhhchhH----------
Q 028906 62 LDIDK-LRYLAIVIESEE--A------------YHIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKES---------- 115 (202)
Q Consensus 62 l~~~k-l~~LaiVvdsee--a------------~~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~---------- 115 (202)
++.++ |+|+||+-|.-- | .-..++.+.+.||...||++|+||= ..-..|+.++.
T Consensus 19 ~~~~~iP~HVAiIMDGN~RwAk~rgl~r~~GH~~G~~~~~~iv~~c~~lGI~~lTlYaFStENwkRp~~EV~~Lm~L~~~ 98 (256)
T 4h8e_A 19 LDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVN 98 (256)
T ss_dssp CCTTCCCSEEEEECCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred ccCCCCCCEEEEEcCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEchhhhCCCHHHHHHHHHHHHH
Confidence 44344 779999999822 1 2356899999999999999999996 23334555433
Q ss_pred ----HHhhcc-c---------CCcccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCcc
Q 028906 116 ----ILGKLN-N---------ATLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKI 175 (202)
Q Consensus 116 ----l~~~~~-n---------~~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~ 175 (202)
..+++. + ...+|. ..-...+..+.+|+|++...=+|++.|+.|++.++.+...+.-+.++
T Consensus 99 ~l~~~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~Avr~i~~~v~~g~l~~~~ 178 (256)
T 4h8e_A 99 FLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDI 178 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEESCGGGSCHHHHHHHHHHHHHTTTCCSCEEEEEEEECHHHHHHHHHHHHHHHHHHTTCCGGG
T ss_pred HHHHHHHHHHHcCeEEEEecCcccCCHHHHHHHHHHHHHhcCCCCeEEEEEeCCCCHHHHHHHHHHHHHHHHcCCCChhh
Confidence 222221 1 112333 11123467788999999999999999999999999998766544333
Q ss_pred ccchhcchHhHHHHHHHhc
Q 028906 176 QEEKIFTEAHMSEALRAVA 194 (202)
Q Consensus 176 ~~~~~fTEadm~eALkaVG 194 (202)
+||..+++.|-.-|
T Consensus 179 -----I~e~~i~~~L~t~~ 192 (256)
T 4h8e_A 179 -----IDETYINNHLMTKD 192 (256)
T ss_dssp -----CCHHHHHTTSTTTT
T ss_pred -----CCHHHHHHhCCCCC
Confidence 89999888775544
No 8
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=97.64 E-value=0.00017 Score=62.08 Aligned_cols=114 Identities=15% Similarity=0.284 Sum_probs=77.2
Q ss_pred cCcceEEEEEec--ccc----------c--ChHHHHHHHHHHHHhccceeEEec-ccchhhhchhHH---H--------h
Q 028906 65 DKLRYLAIVIES--EEA----------Y--HIPAVIQLLQWLVDIGVKHVCLYD-AEGILKKSKESI---L--------G 118 (202)
Q Consensus 65 ~kl~~LaiVvds--eea----------~--~~~kv~~Ll~Wl~~iGVk~v~lYD-~~GvLKks~e~l---~--------~ 118 (202)
.-|+|+||+-|. +=| | -..++.+.+.||..+||++|+||= ..-..|+.++.. | +
T Consensus 5 ~~P~HVAiIMDGNrRwAk~rgl~r~~GH~~G~~~~~~i~~~c~~lGI~~lTlYaFStENw~Rp~~EV~~Lm~L~~~~l~~ 84 (225)
T 3ugs_B 5 NELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCMEENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDE 84 (225)
T ss_dssp CCCCEEEEEECCCC--------------CHHHHHHHHHHHHHHHTTCCEEEEEEEESGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeccCcHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEEcccccCCCHHHHHHHHHHHHHHHHH
Confidence 458999999997 111 1 357889999999999999999997 333456665432 1 2
Q ss_pred h---cccC----------Ccccc------cccccccccCCceEEEeecCCCCHHHHHHHHHHHHHHHhhcCCCCccccch
Q 028906 119 K---LNNA----------TLFEE------AGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVKLGGSGKIQEEK 179 (202)
Q Consensus 119 ~---~~n~----------~~~~~------aN~k~~~~~~~~MtlE~LS~sDGKEaIaKAAnlLc~~~~k~~~~~~~~~~~ 179 (202)
+ +... ..+|. ..-...+..+.+|+|++.-.=+|++.|+.|++.+.. .. ++
T Consensus 85 ~~~~l~~~~vrvr~iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv~----~g---~~---- 153 (225)
T 3ugs_B 85 ALEKFEKNNVRLRAIGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIE----KK---LE---- 153 (225)
T ss_dssp HHHHSTTTTEEEEEESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHH----TT---CC----
T ss_pred HHHHHHHCCcEEEEEeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHHH----hc---Cc----
Confidence 1 1111 12222 111123677889999999999999999999999932 11 22
Q ss_pred hcchHhHHHHH
Q 028906 180 IFTEAHMSEAL 190 (202)
Q Consensus 180 ~fTEadm~eAL 190 (202)
+||..+++-|
T Consensus 154 -I~e~~i~~~L 163 (225)
T 3ugs_B 154 -LNEENLTQNL 163 (225)
T ss_dssp -CSHHHHHHTS
T ss_pred -CCHHHHHHhc
Confidence 8888888765
No 9
>2cz4_A Hypothetical protein TTHA0516; conserved hypothetical protein, PII-like signaling protein, structural genomics, NPPSFA; 1.93A {Thermus thermophilus} SCOP: d.58.5.1
Probab=32.84 E-value=47 Score=25.10 Aligned_cols=87 Identities=22% Similarity=0.200 Sum_probs=48.7
Q ss_pred HHhhchhhhhhhccccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhhchhHHHhhcccCCccccc
Q 028906 50 LISSGILKRYKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEA 129 (202)
Q Consensus 50 ~is~g~l~ky~~l~~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKks~e~l~~~~~n~~~~~~a 129 (202)
.-|+|++|+-.+.++.+.+-+-+++.. .+.-++...|..+|++-.++.+..|-=++.... +
T Consensus 8 ~~~~~~~~~~~~m~~~~mK~I~aIIr~------~k~e~V~~aL~~~Gi~G~TV~~V~G~G~q~~~t---~---------- 68 (119)
T 2cz4_A 8 HHSSGLVPRGSHMDLVPLKLVTIVAES------LLEKRLVEEVKRLGAKGYTITPARGEGSRGIRS---V---------- 68 (119)
T ss_dssp ------------CCEEEEEEEEEEEEG------GGHHHHHHHHHHTTCCCCEEEEEBCTTCCCTTC---S----------
T ss_pred ccccccCcchhhCCcCCcEEEEEEECH------HHHHHHHHHHHhCCCCcEEEcCCEEecCCCCcc---c----------
Confidence 347899999999888888878777763 344455567789999999999988865543211 0
Q ss_pred ccccccccCCceEEEeecCCCCHHHHHHHHH
Q 028906 130 GESNLLLDHKHITLEFASFPDGKEAVAKAAN 160 (202)
Q Consensus 130 N~k~~~~~~~~MtlE~LS~sDGKEaIaKAAn 160 (202)
......+.||++-..+=-|+|.++..
T Consensus 69 -----~~~g~kv~IeiVv~de~ve~vv~~I~ 94 (119)
T 2cz4_A 69 -----DWEGQNIRLETIVSEEVALRILQRLQ 94 (119)
T ss_dssp -----CSTTCEEEEEEEECHHHHHHHHHHHH
T ss_pred -----cccCCCEEEEEEECHHHHHHHHHHHH
Confidence 00124589999876554444444443
No 10
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=32.58 E-value=17 Score=25.37 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHHHhhcCCCCccc-cchhcchHhHHHHHHHh
Q 028906 149 PDGKEAVAKAANLLFMKYVKLGGSGKIQ-EEKIFTEAHMSEALRAV 193 (202)
Q Consensus 149 sDGKEaIaKAAnlLc~~~~k~~~~~~~~-~~~~fTEadm~eALkaV 193 (202)
.|-++.+.+|++++.+......+.-... ....++..|+-.|++.+
T Consensus 25 ~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 25 ANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 7999999999999988766544322111 14468999999998764
No 11
>1twu_A Hypothetical protein YYCE; structural genomics, protein structure initiative, MCSG, DUP of the alpha-beta sandwichs. bacillus subtilis, PSI; 2.00A {Bacillus subtilis} SCOP: d.32.1.8
Probab=28.10 E-value=91 Score=21.73 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=19.1
Q ss_pred cceEEEEEecccccChHHHHHHHHHHHHhcccee
Q 028906 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV 100 (202)
Q Consensus 67 l~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v 100 (202)
+.|+++.|+. +.++.++...+...|++.+
T Consensus 78 ~~hi~~~v~d-----~~~l~~~~~~l~~~G~~~~ 106 (139)
T 1twu_A 78 DSLLVFYVPN-----AVELAAITSKLKHMGYQEV 106 (139)
T ss_dssp TCEEEEECCC-----HHHHHHHHHHHHHTTCCEE
T ss_pred ccEEEEEeCC-----cchHHHHHHHHHHcCCcCc
Confidence 3477776653 4556677777778887754
No 12
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=27.29 E-value=35 Score=24.53 Aligned_cols=18 Identities=17% Similarity=0.333 Sum_probs=15.9
Q ss_pred cchHhHHHHHHHhccCCC
Q 028906 181 FTEAHMSEALRAVAKARN 198 (202)
Q Consensus 181 fTEadm~eALkaVG~~~~ 198 (202)
+|+.|+++||+.+|.+.+
T Consensus 47 Lt~eEI~~Al~ra~~~~~ 64 (70)
T 2w84_A 47 LTDEEIDMAFQQSGTAAD 64 (70)
T ss_dssp CCHHHHHHHHHHHTCCCC
T ss_pred CCHHHHHHHHHHccCCCC
Confidence 899999999999987654
No 13
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=26.09 E-value=85 Score=22.41 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCccccchhcchHhHHHHHHH
Q 028906 150 DGKEAVAKAANLLFMKYVKLGGSGKIQEEKIFTEAHMSEALRA 192 (202)
Q Consensus 150 DGKEaIaKAAnlLc~~~~k~~~~~~~~~~~~fTEadm~eALka 192 (202)
-|.++|.+.+..+|.....-.. =.+.|.+.||.+..+.
T Consensus 7 GG~~~i~~lv~~FY~~v~~dp~-----l~~~F~~~d~~~~~~~ 44 (116)
T 1dlw_A 7 GGQAAVQAVTAQFYANIQADAT-----VATFFNGIDMPNQTNK 44 (116)
T ss_dssp TSHHHHHHHHHHHHHHHHTCTT-----TGGGGTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCHH-----HHHhcCCCCHHHHHHH
Confidence 3799999999999999766332 1345887788777654
No 14
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=25.10 E-value=16 Score=26.23 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCcc-ccchhcchHhHHHHHHHhccC
Q 028906 148 FPDGKEAVAKAANLLFMKYVKLGGSGKI-QEEKIFTEAHMSEALRAVAKA 196 (202)
Q Consensus 148 ~sDGKEaIaKAAnlLc~~~~k~~~~~~~-~~~~~fTEadm~eALkaVG~~ 196 (202)
.+|-++++++|+..+-+......+.-.+ .....++..|+..|++..|-.
T Consensus 29 s~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~ 78 (93)
T 1n1j_A 29 AKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFD 78 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence 5688999999998875543332211111 013358999999999988754
No 15
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=25.07 E-value=1.1e+02 Score=20.91 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=18.6
Q ss_pred cceEEEEEecccccChHHHHHHHHHHHHhcccee
Q 028906 67 LRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHV 100 (202)
Q Consensus 67 l~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v 100 (202)
+.|+++.++. ..++..+...+...|++.+
T Consensus 68 ~~h~~~~~~~-----~~d~~~~~~~l~~~G~~~~ 96 (135)
T 3rri_A 68 PRHFGITFRD-----KKHFDNLYKLAKQRGIPFY 96 (135)
T ss_dssp SCEEEEECSS-----HHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEEcC-----hHhHHHHHHHHHHcCCcee
Confidence 4566666554 2467777777778887653
No 16
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=24.12 E-value=31 Score=28.11 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=19.1
Q ss_pred ceEEEeecCCCCHHHHHHHHHHHH
Q 028906 140 HITLEFASFPDGKEAVAKAANLLF 163 (202)
Q Consensus 140 ~MtlE~LS~sDGKEaIaKAAnlLc 163 (202)
|+.+.++|-+.|+.+||.||=.=.
T Consensus 4 h~~vk~isR~~G~Sava~aAYrsr 27 (185)
T 2ns6_A 4 HLTAKTGSRSGGQSARAKADYIQR 27 (185)
T ss_dssp CEEEEEEC--CCCCHHHHHHHHHT
T ss_pred EEEEeeeecCCCHhHHHHHHHHcC
Confidence 789999999999999999986643
No 17
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}
Probab=20.16 E-value=1.7e+02 Score=21.80 Aligned_cols=45 Identities=16% Similarity=0.157 Sum_probs=28.5
Q ss_pred hhhccccCcceEEEEEecccccChHHHHHHHHHHHHhccceeEEecccchhhh
Q 028906 59 YKALDIDKLRYLAIVIESEEAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKK 111 (202)
Q Consensus 59 y~~l~~~kl~~LaiVvdseea~~~~kv~~Ll~Wl~~iGVk~v~lYD~~GvLKk 111 (202)
|+++.-..+..++|-+|+.+ .+-.|+..-|+++-.+.|.+|-+-+
T Consensus 78 ~~~~~~~~~~vv~Vs~D~~~--------~~~~~~~~~~~~f~~l~D~~~~~~~ 122 (179)
T 3ixr_A 78 LPQFEQINATVLGVSRDSVK--------SHDSFCAKQGFTFPLVSDSDAILCK 122 (179)
T ss_dssp HHHHHTTTEEEEEEESCCHH--------HHHHHHHHHTCCSCEEECTTCHHHH
T ss_pred HHHHHHCCCEEEEEcCCCHH--------HHHHHHHHcCCceEEEECCchHHHH
Confidence 33333334666666555422 2345888899999999998875443
Done!