RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028906
(202 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.9 bits (118), Expect = 2e-07
Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 24/145 (16%)
Query: 14 ACQIGNLGLWIIWLLIHFAVDLWYFALHIACAIESYLISSGILKRYKALDIDKLR--YLA 71
L II I + W H+ C + +I S + L+ + R +
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL----NVLEPAEYRKMFDR 377
Query: 72 IVIESEEAYHIPA-VIQLLQWLVDIGVKHVCLYDAEGILKKSKESILGKLNNATLFEEAG 130
+ + A HIP ++ L+ W ++K ++ KL+ +L E+
Sbjct: 378 LSVFPPSA-HIPTILLSLI-W--------------FDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 131 ESNLLLDHKHITLEFASFPDGKEAV 155
+ + + I LE + + A+
Sbjct: 422 KESTISIP-SIYLELKVKLENEYAL 445
Score = 30.2 bits (67), Expect = 0.52
Identities = 24/134 (17%), Positives = 39/134 (29%), Gaps = 20/134 (14%)
Query: 60 KALDI-DKLRYLAIVIESEEAYHI---PAVIQ---LLQWL--------VDIGVKHVCLYD 104
D D ++ EE HI + L W V V+ V +
Sbjct: 31 DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN 90
Query: 105 AEGILKKSKESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVAKAA-NLLF 163
+ ++ K ++ E L D++ S + +A L
Sbjct: 91 YKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 164 MKYVKL---GGSGK 174
K V + GSGK
Sbjct: 150 AKNVLIDGVLGSGK 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 41.2 bits (96), Expect = 1e-04
Identities = 32/181 (17%), Positives = 54/181 (29%), Gaps = 61/181 (33%)
Query: 8 QKVYSWACQIGNLGLWI---------------------IWL--LIHFAVDLWYFALHIAC 44
+KV++ I W+ I + L H+ V
Sbjct: 206 EKVFTQGLNILE---WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPG- 261
Query: 45 AIESYLISSGILKRYKALDIDKLRYLAIVI---ESEEAYHIPAVIQLLQWLVDIGVK--- 98
E G + L A+ I +S E++ +V + + L IGV+
Sbjct: 262 --ELRSYLKGATGHSQGL------VTAVAIAETDSWESFF-VSVRKAITVLFFIGVRCYE 312
Query: 99 ---HVCLYDAEGILKKSKE----------SILGKLNNATLFEEAGESNLLL---DHKHIT 142
+ L IL+ S E SI L + + ++N L I+
Sbjct: 313 AYPNTSL--PPSILEDSLENNEGVPSPMLSISN-LTQEQVQDYVNKTNSHLPAGKQVEIS 369
Query: 143 L 143
L
Sbjct: 370 L 370
Score = 32.3 bits (73), Expect = 0.11
Identities = 27/135 (20%), Positives = 42/135 (31%), Gaps = 29/135 (21%)
Query: 78 EAYHIPAVIQLLQWLVDIGVKHVCLYDAEGILKKSKESILG-KLNN----ATLFEEAGES 132
+ Y Q + W + H D G SIL +NN F GE
Sbjct: 1634 DLYKTSKAAQDV-W--NRADNH--FKDTYGF------SILDIVINNPVNLTIHF--GGEK 1680
Query: 133 NLLLDHKHITLEFASFPDGK---EAVAKAANLLFMKYVKLGGSGKIQEEK-----IFTEA 184
+ + + F + DGK E + K N Y G + + +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTL-- 1738
Query: 185 HMSEALRAVAKARNL 199
M +A K++ L
Sbjct: 1739 -MEKAAFEDLKSKGL 1752
Score = 31.6 bits (71), Expect = 0.22
Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 50/143 (34%)
Query: 68 RYLAIVIESEEAYHIPAVIQLLQWLV-----------DIGVKHV----CLYDAEGILKKS 112
++L V E + Q+L + DI H L + + L K+
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLVKT 119
Query: 113 KESILGKLNNATL----FEEAGESNLLLDHKHITLEFASFPDGKEAVAKAANLLFMKYVK 168
KE I + + F++ S L + A L
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALF----------------RAVGEGNAQL----VAI 159
Query: 169 LGGSGKIQEEKIFTEAHMSEALR 191
GG G + F E LR
Sbjct: 160 FGGQGNT--DDYFEE------LR 174
Score = 27.7 bits (61), Expect = 3.0
Identities = 30/178 (16%), Positives = 59/178 (33%), Gaps = 72/178 (40%)
Query: 37 YFALHIACAIES---Y--LIS-SGILKRYKALDIDKLR--YLAIVIESEEA----YHIPA 84
FA H S Y L S + ++ +++ R + + + +E Y + A
Sbjct: 1758 TFAGH------SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 85 VI--QLLQWLVDIGVKHVCLYDAEGILKKSKESILGKL----N-NATLFEE------AGE 131
+ ++ +++V E + K++ G L N N E AG+
Sbjct: 1812 INPGRVAASFSQEALQYVV----ERVGKRT-----GWLVEIVNYNV----ENQQYVAAGD 1858
Query: 132 SNLLLDHKHITLEFASFPDGKEAVAKAANLL-FMK-----YVKLGGSGKIQ--EEKIF 181
A+ N+L F+K ++L S ++ E +F
Sbjct: 1859 --------------------LRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.045
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 22/48 (45%)
Query: 113 KESILGKLNNATLFEEAGESNLLLDHKHITLEFASFPDGKEAVA-KAA 159
K+++ KL +++L L +A D A+A KA
Sbjct: 19 KQAL-KKL----------QASLKL--------YA--DDSAPALAIKAT 45
>2wnr_B Probable exosome complex exonuclease 1; phosphate binding, 3'-5'
exoribonuclease, hydrolase; 2.65A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 240
Score = 27.2 bits (61), Expect = 3.9
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 164 MKYVKLGGSGKI---QEEKIFTEAHMSEALRAVAKARN 198
+ L + +I Q + T AL +
Sbjct: 187 VPVAILPRTREITLLQSDGNLTPEEFERALDLAVEGCL 224
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 27.1 bits (61), Expect = 4.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 172 SGKIQEEKIFTEAHMSEALR 191
+ K+ +E F + EAL
Sbjct: 97 ALKVMDEPFFGPEDVEEALG 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.138 0.417
Gapped
Lambda K H
0.267 0.0848 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,201,668
Number of extensions: 190391
Number of successful extensions: 573
Number of sequences better than 10.0: 1
Number of HSP's gapped: 568
Number of HSP's successfully gapped: 14
Length of query: 202
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 113
Effective length of database: 4,216,824
Effective search space: 476501112
Effective search space used: 476501112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (24.7 bits)