BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028907
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q20065|P4HA2_CAEEL Prolyl 4-hydroxylase subunit alpha-2 OS=Caenorhabditis elegans
GN=phy-2 PE=1 SV=1
Length = 539
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 73/130 (56%), Gaps = 4/130 (3%)
Query: 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
VE++ ++P A ++ N + E E + LA+P ++++TV +S TG+ + + R S +L
Sbjct: 318 VEILRFDPLAVLFKNVIHDSEIEVIKELASPKLKRATVQNSKTGELEHATYRISKSAWLK 377
Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 192
D +I + +RI DFT E LQV +Y G Y+PHFD+ E F T N G
Sbjct: 378 GDLDPVIDRVNRRIEDFTNLNQATSEELQVANYGLGGHYDPHFDFARKEEKNAFKTLNTG 437
Query: 193 QRMATVLMYL 202
R+ATVL Y+
Sbjct: 438 NRIATVLFYM 447
>sp|P54001|P4HA1_RAT Prolyl 4-hydroxylase subunit alpha-1 OS=Rattus norvegicus GN=P4ha1
PE=2 SV=2
Length = 534
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 66/124 (53%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P + ++TV D +TGK ++ R S +L+ D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLSRATVHDPETGKLTTAQYRVSKSAWLSGYEDPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|Q60715|P4HA1_MOUSE Prolyl 4-hydroxylase subunit alpha-1 OS=Mus musculus GN=P4ha1 PE=2
SV=2
Length = 534
Score = 78.2 bits (191), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ D +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPVTGALETVHYRISKSAWLSGYEDPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFRELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|Q10576|P4HA1_CAEEL Prolyl 4-hydroxylase subunit alpha-1 OS=Caenorhabditis elegans
GN=dpy-18 PE=1 SV=2
Length = 559
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 67/130 (51%), Gaps = 4/130 (3%)
Query: 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA 136
VE+ + P A ++ + +S +E + LA P + ++TV DS TGK + R S +L
Sbjct: 321 VEIKRFNPLAVLFKDVISDDEVAAIQELAKPKLARATVHDSVTGKLVTATYRISKSAWLK 380
Query: 137 RGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDE----FNTKNGG 192
++ + KRI T +E E LQ+ +Y G Y+PHFD+ E F + G
Sbjct: 381 EWEGDVVETVNKRIGYMTNLEMETAEELQIANYGIGGHYDPHFDHAKKEESKSFESLGTG 440
Query: 193 QRMATVLMYL 202
R+ATVL Y+
Sbjct: 441 NRIATVLFYM 450
>sp|Q5RAG8|P4HA1_PONAB Prolyl 4-hydroxylase subunit alpha-1 OS=Pongo abelii GN=P4HA1 PE=2
SV=1
Length = 534
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ + +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|P13674|P4HA1_HUMAN Prolyl 4-hydroxylase subunit alpha-1 OS=Homo sapiens GN=P4HA1 PE=1
SV=2
Length = 534
Score = 76.6 bits (187), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ + +
Sbjct: 334 KPRIIRFHDIISDAEIEIVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|Q1RMU3|P4HA1_BOVIN Prolyl 4-hydroxylase subunit alpha-1 OS=Bos taurus GN=P4HA1 PE=1
SV=1
Length = 534
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR +H+ +S E E + +LA P +R++T+ + TG + R S +L+ + +
Sbjct: 334 KPRIIRFHDIISDAEIEVVKDLAKPRLRRATISNPITGDLETVHYRISKSAWLSGYENPV 393
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 394 VSRINMRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFARKDEPDAFKELGTGNRIATW 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LFYM 457
>sp|P16924|P4HA1_CHICK Prolyl 4-hydroxylase subunit alpha-1 OS=Gallus gallus GN=P4HA1 PE=1
SV=1
Length = 516
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 63/124 (50%), Gaps = 4/124 (3%)
Query: 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKI 142
+PR + + +S EE E + LA P + ++TV D +TGK + R S +L+ +
Sbjct: 316 KPRIVRFLDIISDEEIETVKELAKPRLSRATVHDPETGKLTTAHYRVSKSAWLSGYESPV 375
Query: 143 IRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATV 198
+ I RI D T + E LQV +Y G +YEPHFD+ D F G R+AT
Sbjct: 376 VSRINTRIQDLTGLDVSTAEELQVANYGVGGQYEPHFDFGRKDEPDAFKELGTGNRIATW 435
Query: 199 LMYL 202
L Y+
Sbjct: 436 LFYM 439
>sp|Q5ZLK5|P4HA2_CHICK Prolyl 4-hydroxylase subunit alpha-2 OS=Gallus gallus GN=P4HA2 PE=2
SV=1
Length = 534
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 67/124 (54%), Gaps = 3/124 (2%)
Query: 82 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD 140
W+ P Y++ +S EE E + LA P + ++TV D TG + R S ++L D
Sbjct: 334 WDSPHIVRYYDVMSDEEIEKIKQLAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDD 393
Query: 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATV 198
++ + +R+ T ++ E LQV +Y G +YEPHFD+ F++ K+ G R+AT
Sbjct: 394 PVVAKVNQRMQQITGLTVKTAELLQVANYGMGGQYEPHFDFSRRPFDSTLKSEGNRLATF 453
Query: 199 LMYL 202
L Y+
Sbjct: 454 LNYM 457
>sp|O15460|P4HA2_HUMAN Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1
SV=1
Length = 535
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 82 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD 140
W+ P Y++ +S EE E + +A P + ++TV D TG + R S ++L D
Sbjct: 333 WDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDD 392
Query: 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYF----MDEFNTKNGGQRMA 196
++ + +R+ T ++ E LQV +Y G +YEPHFD+ D F G R+A
Sbjct: 393 PVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVA 452
Query: 197 TVLMYL 202
T L Y+
Sbjct: 453 TFLNYM 458
>sp|Q60716|P4HA2_MOUSE Prolyl 4-hydroxylase subunit alpha-2 OS=Mus musculus GN=P4ha2 PE=2
SV=1
Length = 537
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 64/126 (50%), Gaps = 5/126 (3%)
Query: 82 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD 140
W+ P Y++ +S EE E + +A P + ++TV D TG + R S ++L D
Sbjct: 335 WDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDD 394
Query: 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMA 196
++ + +R+ T ++ E LQV +Y G +YEPHFD+ D F G R+A
Sbjct: 395 PVVARVNRRMQHITGLTVKTAELLQVANYGMGGQYEPHFDFSRSDDEDAFKRLGTGNRVA 454
Query: 197 TVLMYL 202
T L Y+
Sbjct: 455 TFLNYM 460
>sp|Q75UG4|P4HA3_BOVIN Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2
SV=1
Length = 544
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 66/130 (50%), Gaps = 7/130 (5%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EVI EP +YH+F+S E + + LA P +++S V + K R S +L
Sbjct: 340 EVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGE--KQLPVEYRISKSAWLKD 397
Query: 138 GRDKIIRDIEKRIADFTFFPLEN--GEGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGG 192
D ++ ++ RIA T ++ E LQV++Y G YEPHFD+ + N G
Sbjct: 398 TVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMNSG 457
Query: 193 QRMATVLMYL 202
R+AT ++YL
Sbjct: 458 NRVATFMIYL 467
>sp|Q6W3E9|P4HA3_RAT Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3
PE=2 SV=1
Length = 544
Score = 67.8 bits (164), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 65/130 (50%), Gaps = 7/130 (5%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EVI P +YH+F+S EE + + LA P +++S V + K R S +L
Sbjct: 340 EVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKD 397
Query: 138 GRDKIIRDIEKRIADFTFFPLEN--GEGLQVLHYEAGQKYEPHFDYFM---DEFNTKNGG 192
D ++ +++RIA T ++ E LQV++Y G YEPHFD+ G
Sbjct: 398 TVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSG 457
Query: 193 QRMATVLMYL 202
R AT+++YL
Sbjct: 458 NRAATLMIYL 467
>sp|Q6W3F0|P4HA3_MOUSE Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2
SV=1
Length = 542
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 64/130 (49%), Gaps = 7/130 (5%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EV+ P +YH+F+S EE + + LA P +++S V + K R S +L
Sbjct: 338 EVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKD 395
Query: 138 GRDKIIRDIEKRIADFTFFPLEN--GEGLQVLHYEAGQKYEPHFDYFM---DEFNTKNGG 192
D ++ ++ RIA T ++ E LQV++Y G YEPHFD+ G
Sbjct: 396 TVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 455
Query: 193 QRMATVLMYL 202
R+AT ++YL
Sbjct: 456 NRVATFMIYL 465
>sp|Q7Z4N8|P4HA3_HUMAN Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1
SV=1
Length = 544
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 78 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR 137
EVI EP +YH+F+S E + + LA P +++S V + K R S +L
Sbjct: 340 EVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKD 397
Query: 138 GRDKIIRDIEKRIADFTFFPLEN--GEGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGG 192
D + + RIA T + E LQV++Y G YEPHFD+ + G
Sbjct: 398 TVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSG 457
Query: 193 QRMATVLMYL 202
R+AT ++YL
Sbjct: 458 NRVATFMIYL 467
>sp|Q5UP57|P4H_MIMIV Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L593 PE=1 SV=1
Length = 242
Score = 54.3 bits (129), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 59/124 (47%), Gaps = 13/124 (10%)
Query: 85 RAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIR 144
+ FV +N ++ +C+ ++ A + DS D +R S ++++ + +++
Sbjct: 59 KPFVLNNLINPTKCQEIMQFAN-----GKLFDSQVLSGTDKNIRNSQQMWISKN-NPMVK 112
Query: 145 DIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMD------EFNTKNGGQRMATV 198
I + I P +N E LQV+ Y Q Y H D D EF + GGQR+ TV
Sbjct: 113 PIFENICRQFNVPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEF-IERGGQRILTV 171
Query: 199 LMYL 202
L+YL
Sbjct: 172 LIYL 175
>sp|Q0WT31|PMTP_ARATH Probable methyltransferase PMT25 OS=Arabidopsis thaliana
GN=At2g34300 PE=1 SV=2
Length = 770
Score = 34.7 bits (78), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 1 MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAF-GILSMPSSSGDSRKANDLSSIV 59
MA +YSR +KSSS L +T++++ + ++ F S P+ S + +
Sbjct: 1 MAMGKYSRVDGKKSSSYGLTITIVLLLSLCLVGTWMFMSSWSAPADSAGYSSTDTAKDVS 60
Query: 60 RKSMERSEGD 69
+ + + EGD
Sbjct: 61 KNDLRKEEGD 70
>sp|Q8L7V3|PMTQ_ARATH Probable methyltransferase PMT26 OS=Arabidopsis thaliana
GN=At5g64030 PE=1 SV=1
Length = 829
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 1 MAKPRYSRFPTRKSSSSTLILTLLIMFTFAILILLAFGILSMPSSS-GDSRKANDLS 56
MA+PRY+R R+ SS+ +++F L+ GI M SSS G ++ +++S
Sbjct: 1 MAQPRYTRIDNRRPSSNYCSTVTVVVFVALCLV----GIWMMTSSSVGPAQNVDEVS 53
>sp|B2A2Y9|RECF_NATTJ DNA replication and repair protein RecF OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=recF PE=3 SV=1
Length = 386
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 68 GDEGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRV 127
G RA++ E+I WE F L KE+ +Y + + T + GK+K+ +V
Sbjct: 49 GKSHRAQKEKELIRWETSGFYLKGELEKEQAQYTLEIITNYQ---------NGKNKNLKV 99
Query: 128 RTSSGT 133
S T
Sbjct: 100 NNLSQT 105
>sp|P20659|TRX_DROME Histone-lysine N-methyltransferase trithorax OS=Drosophila
melanogaster GN=trx PE=1 SV=4
Length = 3726
Score = 30.4 bits (67), Expect = 7.7, Method: Composition-based stats.
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 58 IVRKSMERSEGDEGRAEQWVEVISWEPRAFVYH--NFLSK--EECEYLINLATPHMRKST 113
I +K R+E + +AE+W + + E +A +Y LSK + C L +R +
Sbjct: 1475 ICKKCARRNESSKIKAEEWRQAVMEEFKASLYSVLKLLSKSRQACALLKLSPRKKLRCTC 1534
Query: 114 VVDSDTGKSKDSRVRTSSGTFLARGRD 140
S+ GK + ++ SSG+ G D
Sbjct: 1535 GASSNQGKLQPKALQFSSGSDNGLGSD 1561
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,863,282
Number of Sequences: 539616
Number of extensions: 2976597
Number of successful extensions: 7293
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7269
Number of HSP's gapped (non-prelim): 27
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)