Query 028907
Match_columns 202
No_of_seqs 197 out of 1094
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 04:25:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028907.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028907hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00052 prolyl 4-hydroxylase; 100.0 1.6E-37 3.4E-42 273.5 15.8 132 71-202 41-172 (310)
2 KOG1591 Prolyl 4-hydroxylase a 100.0 3.3E-37 7.1E-42 268.8 11.4 195 8-202 10-220 (289)
3 smart00702 P4Hc Prolyl 4-hydro 99.9 4.9E-22 1.1E-26 161.0 11.7 115 84-202 1-119 (178)
4 PRK05467 Fe(II)-dependent oxyg 99.2 1.8E-10 4E-15 97.8 9.4 109 86-202 2-121 (226)
5 PHA02813 hypothetical protein; 98.1 1.2E-05 2.5E-10 72.1 7.2 91 107-202 34-130 (354)
6 PHA02869 C4L/C10L-like gene fa 97.9 1.5E-05 3.3E-10 72.5 5.8 87 109-202 45-139 (418)
7 PF13661 2OG-FeII_Oxy_4: 2OG-F 97.0 0.0006 1.3E-08 47.4 3.0 39 160-202 9-47 (70)
8 COG3128 PiuC Uncharacterized i 96.5 0.005 1.1E-07 51.2 5.2 107 85-200 3-119 (229)
9 PF13532 2OG-FeII_Oxy_2: 2OG-F 93.9 0.43 9.4E-06 38.5 8.4 94 86-182 2-117 (194)
10 KOG3200 Uncharacterized conser 93.6 0.25 5.4E-06 40.9 6.4 94 80-182 8-108 (224)
11 KOG3710 EGL-Nine (EGLN) protei 92.4 0.66 1.4E-05 40.0 7.5 109 85-202 54-177 (280)
12 TIGR02408 ectoine_ThpD ectoine 92.4 0.69 1.5E-05 40.1 7.9 116 83-202 28-152 (277)
13 COG3751 EGL-9 Predicted prolin 91.4 0.68 1.5E-05 40.2 6.6 104 91-202 55-170 (252)
14 PF03336 Pox_C4_C10: Poxvirus 90.1 0.58 1.3E-05 42.2 5.2 76 123-202 36-115 (339)
15 PF03171 2OG-FeII_Oxy: 2OG-Fe( 89.4 0.19 4.2E-06 36.1 1.4 21 162-182 2-25 (98)
16 PF13640 2OG-FeII_Oxy_3: 2OG-F 88.5 0.18 3.9E-06 36.3 0.7 19 164-182 1-19 (100)
17 KOG3959 2-Oxoglutarate- and ir 85.6 1.2 2.6E-05 38.5 4.2 92 84-181 72-173 (306)
18 PHA02866 Hypothetical protein; 83.0 1.7 3.6E-05 38.8 4.0 83 109-202 32-117 (333)
19 PRK15401 alpha-ketoglutarate-d 80.0 9.4 0.0002 32.3 7.4 98 82-182 16-136 (213)
20 PF05721 PhyH: Phytanoyl-CoA d 76.3 2.2 4.7E-05 33.6 2.5 22 86-107 6-27 (211)
21 PF13677 MotB_plug: Membrane M 71.8 12 0.00025 25.0 4.8 27 1-27 1-27 (58)
22 TIGR01762 chlorin-enz chlorina 70.9 35 0.00075 29.9 8.9 22 86-107 16-37 (288)
23 TIGR00568 alkb DNA alkylation 61.2 13 0.00029 30.1 4.1 41 141-181 74-114 (169)
24 PF03579 SHP: Small hydrophobi 52.3 20 0.00044 24.3 3.0 29 12-40 13-41 (64)
25 COG2850 Uncharacterized conser 38.7 48 0.001 30.5 4.2 41 140-184 100-141 (383)
26 COG1993 PII-like signaling pro 33.1 81 0.0018 24.0 4.0 75 98-172 25-109 (109)
27 COG3145 AlkB Alkylated DNA rep 32.8 49 0.0011 27.6 3.2 58 127-184 71-128 (194)
28 PF07894 DUF1669: Protein of u 29.8 68 0.0015 28.4 3.7 19 89-107 47-65 (284)
29 PF15183 MRAP: Melanocortin-2 29.5 77 0.0017 23.1 3.2 20 17-36 42-61 (90)
30 PRK06925 flagellar motor prote 28.2 94 0.002 26.2 4.2 6 1-6 1-6 (230)
31 PF12273 RCR: Chitin synthesis 27.4 50 0.0011 25.2 2.2 19 19-37 3-21 (130)
32 PF04194 PDCD2_C: Programmed c 26.9 78 0.0017 25.3 3.3 31 139-178 56-86 (164)
33 cd08788 CARD_NOD2_2_CARD15 Cas 26.9 29 0.00064 25.0 0.7 15 89-103 25-39 (81)
34 PF13544 N_methyl_2: Type IV p 26.5 79 0.0017 18.3 2.4 20 8-27 7-26 (31)
35 PF15240 Pro-rich: Proline-ric 24.8 28 0.0006 28.8 0.3 16 31-46 2-17 (179)
36 PRK06489 hypothetical protein; 24.6 2.2E+02 0.0048 25.0 6.1 16 83-98 69-84 (360)
37 PF15330 SIT: SHP2-interacting 24.2 61 0.0013 24.4 2.1 18 24-41 4-21 (107)
38 PF06200 tify: tify domain; I 23.7 1.8E+02 0.0038 17.7 3.7 27 79-106 9-35 (36)
39 PF05546 She9_MDM33: She9 / Md 21.9 85 0.0018 26.6 2.7 24 13-36 149-173 (207)
40 PF03754 DUF313: Domain of unk 21.7 61 0.0013 24.8 1.6 13 89-101 49-61 (114)
41 PF01448 ELM2: ELM2 domain; I 20.8 1.2E+02 0.0027 19.4 2.8 26 77-107 28-53 (55)
42 PF12955 DUF3844: Domain of un 20.5 92 0.002 23.5 2.3 15 24-38 71-85 (103)
No 1
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=100.00 E-value=1.6e-37 Score=273.48 Aligned_cols=132 Identities=53% Similarity=0.909 Sum_probs=123.5
Q ss_pred CCCCceEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHH
Q 028907 71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI 150 (202)
Q Consensus 71 ~~~~~~vE~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri 150 (202)
...+.|+|+|||+|+|++||||||++||++||++|++++++|+++++.+|+...+++|+|+++|+++.+++++++|++||
T Consensus 41 ~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~Ri 120 (310)
T PLN00052 41 PFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEERI 120 (310)
T ss_pred CcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHHH
Confidence 45899999999999999999999999999999999999999999887777777889999999999988899999999999
Q ss_pred HhhhCCCCCCCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 151 ~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
++++|+|.+++|++||+||++||+|++|+|+|.+..+...+|+|++|+|+||
T Consensus 121 a~~t~lp~~~~E~lQVlrY~~Gq~Y~~H~D~~~~~~~~~~gg~R~aTvL~YL 172 (310)
T PLN00052 121 AAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKINQALGGHRYATVLMYL 172 (310)
T ss_pred HHHhCCCcccCcceEEEecCCCCCCCCCCCccccccccccCCceeEEEEEEe
Confidence 9999999999999999999999999999999986544556899999999998
No 2
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-37 Score=268.85 Aligned_cols=195 Identities=45% Similarity=0.677 Sum_probs=154.0
Q ss_pred CCCCCCC--chHHHHHHHHHHHHHHHHHHHHhccccCCC---CCCCCCCCCCcchhhhhcccc------CCCCCCCCCce
Q 028907 8 RFPTRKS--SSSTLILTLLIMFTFAILILLAFGILSMPS---SSGDSRKANDLSSIVRKSMER------SEGDEGRAEQW 76 (202)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~ 76 (202)
+...+++ +..+.++.++.....+...+..++.+..+. ...+..-..++.......-.+ .++|+..+|.|
T Consensus 10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~~~~~ap~k 89 (289)
T KOG1591|consen 10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGPFLRLAPVK 89 (289)
T ss_pred eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCcceeecchh
Confidence 4445554 234667777777777777777888877766 222211122222222211111 12899999999
Q ss_pred EEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceee-eCCCCCccccceeccceeeecCCCcHHHHHHHHHHHhhhC
Q 028907 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVV-DSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF 155 (202)
Q Consensus 77 vE~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~-~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~ltg 155 (202)
+|+|||+|++++||||++++||++|+.+|+++|++++|. +..+|....+.+|+|+++|+..+.++++++|++||++++|
T Consensus 90 ~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~ 169 (289)
T KOG1591|consen 90 LEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTG 169 (289)
T ss_pred hhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999994 5555667777789999999999889999999999999999
Q ss_pred CCCCCCccceeeecCCCccccccccCCCc---c-cCCCCCCCceEEEEecC
Q 028907 156 FPLENGEGLQVLHYEAGQKYEPHFDYFMD---E-FNTKNGGQRMATVLMYL 202 (202)
Q Consensus 156 l~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~---~-~~~~~~g~R~aTvLiYL 202 (202)
+|.+++|++||+||++||||++|+|+|.+ . .+...+|+|++|+|+||
T Consensus 170 l~~e~~E~lqVlnYg~Gg~Y~~H~D~~~~~~~~~~~~~~~g~RiaT~l~yl 220 (289)
T KOG1591|consen 170 LPVENGESLQVLNYGLGGHYEPHYDYFLPEEDETFNGLNGGNRIATVLMYL 220 (289)
T ss_pred CCcccCccceEEEecCCccccccccccccccchhhhhcccCCcceeEEEEe
Confidence 99999999999999999999999999953 2 34567899999999997
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.88 E-value=4.9e-22 Score=161.02 Aligned_cols=115 Identities=40% Similarity=0.644 Sum_probs=101.5
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeccceeeecCCC-cHHHHHHHHHHHhhhCCC---CC
Q 028907 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGR-DKIIRDIEKRIADFTFFP---LE 159 (202)
Q Consensus 84 P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~-d~vv~~I~~Ri~~ltgl~---~~ 159 (202)
|.|+++|||||++||++|++.+++...++.+..+..+....+++|+|+.+|++..+ ++++++|++|+.++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 88999999999999999999999888788887654333356789999999999865 899999999999999998 78
Q ss_pred CCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 160 NGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 160 ~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
..|.+|+++|++|++|.+|+|.+.... .++|.+|+++||
T Consensus 81 ~~~~~~~~~Y~~g~~~~~H~D~~~~~~----~~~r~~T~~~yL 119 (178)
T smart00702 81 SAEDAQVARYGPGGHYGPHVDNFEDDE----NGDRIATFLLYL 119 (178)
T ss_pred cCcceEEEEECCCCcccCcCCCCCCCC----CCCeEEEEEEEe
Confidence 999999999999999999999986532 279999999997
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=99.15 E-value=1.8e-10 Score=97.82 Aligned_cols=109 Identities=17% Similarity=0.209 Sum_probs=73.7
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC-CCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHHHhhh---------C
Q 028907 86 AFVYHNFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT---------F 155 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~-~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~lt---------g 155 (202)
+++++|+||++||+++++..+. .++...+. .....+++|+....- . .++..+.|.++|.+.+ .
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t----aG~~~~~vKnN~ql~--~-d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT----AGAQAAQVKNNQQLP--E-DSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcC----cCccchhcccccccC--C-CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 6789999999999999998754 44433332 122345677766543 2 2567777887777643 3
Q ss_pred CCCCCCccceeeecCCCccccccccCCCcccC-CCCCCCceEEEEecC
Q 028907 156 FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFN-TKNGGQRMATVLMYL 202 (202)
Q Consensus 156 l~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~-~~~~g~R~aTvLiYL 202 (202)
+|.. .+++++.||++||+|.+|.|....... ...+-+|..|+++||
T Consensus 75 lp~~-i~~~~f~rY~~G~~y~~H~D~~~~~~~~~~~~~rs~lS~~lyL 121 (226)
T PRK05467 75 LPRK-IHPPLFNRYEGGMSYGFHVDNAVRSLPGTGGRVRTDLSATLFL 121 (226)
T ss_pred cccc-cccceEEEECCCCccCccccCCcccCCCCCcceeEEEEEEEEe
Confidence 4433 357899999999999999999754211 111224578999997
No 5
>PHA02813 hypothetical protein; Provisional
Probab=98.05 E-value=1.2e-05 Score=72.08 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=63.7
Q ss_pred CCCccceeeeCCCC-CccccceeccceeeecCCCcHHHHHHHHHHHh-hhCCC----CCCCccceeeecCCCcccccccc
Q 028907 107 PHMRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIAD-FTFFP----LENGEGLQVLHYEAGQKYEPHFD 180 (202)
Q Consensus 107 ~~L~~s~v~~~~~g-~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~-ltgl~----~~~~E~lQv~rY~~Gg~Y~~H~D 180 (202)
-.+..|.+.+..+| +....+.|+++.+.++.. +.+..+|.+-+-+ +.|.+ +.-.|.+.++||.+||+|.+|.|
T Consensus 34 ~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~kGq~F~~H~D 112 (354)
T PHA02813 34 IIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYEKGDFFNNHRD 112 (354)
T ss_pred cCccccceeccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEECCCcccCcccC
Confidence 35677888875544 567789999999999853 3344444333322 33433 35689999999999999999999
Q ss_pred CCCcccCCCCCCCceEEEEecC
Q 028907 181 YFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 181 ~f~~~~~~~~~g~R~aTvLiYL 202 (202)
+..... . .....|+|+||
T Consensus 113 g~~~r~---k-~~s~~tLLLYL 130 (354)
T PHA02813 113 FIHFKS---K-NCYCYHLVLYL 130 (354)
T ss_pred Cceeec---C-CceEEEEEEEE
Confidence 854321 1 22899999997
No 6
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=97.94 E-value=1.5e-05 Score=72.45 Aligned_cols=87 Identities=15% Similarity=0.240 Sum_probs=64.9
Q ss_pred CccceeeeCCCC-CccccceeccceeeecCCCcHHHHHHHHHHHhh-----hCC--CCCCCccceeeecCCCcccccccc
Q 028907 109 MRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADF-----TFF--PLENGEGLQVLHYEAGQKYEPHFD 180 (202)
Q Consensus 109 L~~s~v~~~~~g-~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~l-----tgl--~~~~~E~lQv~rY~~Gg~Y~~H~D 180 (202)
...|.+.+..+| +..+...|.|++.-+++ ...+.|++|++.+ -|+ .+.-.|.+.++||.+||+|++|.|
T Consensus 45 ~~~s~i~~~~~g~e~~~~~~~ksKqii~e~---~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~F~~H~D 121 (418)
T PHA02869 45 CEDSKIFFPEKRTELLSIKDRKSKQIVFEN---SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDYFARHRD 121 (418)
T ss_pred cccceeeccccCceeEeeccccceeEEech---HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCccccccc
Confidence 477888887666 45667789999988874 5566666666654 353 446789999999999999999999
Q ss_pred CCCcccCCCCCCCceEEEEecC
Q 028907 181 YFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 181 ~f~~~~~~~~~g~R~aTvLiYL 202 (202)
+.... .+..-..|+|+||
T Consensus 122 g~~~r----s~e~s~~tLLLYL 139 (418)
T PHA02869 122 FSTVF----SKNIICVHLLLYL 139 (418)
T ss_pred Cceec----CCCEEEEEEEEEE
Confidence 75432 2345577999997
No 7
>PF13661 2OG-FeII_Oxy_4: 2OG-Fe(II) oxygenase superfamily
Probab=97.02 E-value=0.0006 Score=47.40 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 160 NGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 160 ~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
..+.++..+|..|++|.+|.|..... .+.+|..|+|+||
T Consensus 9 ~~~~~~~~~~~~g~~~~~H~D~~~~~----~~~~r~~t~llYL 47 (70)
T PF13661_consen 9 FRPNFRFYRYRRGDFFGWHVDADPSS----SGKRRFLTLLLYL 47 (70)
T ss_pred cCcceeEEEcCCCCEeeeeEcCCccc----cccceeEEEEEEe
Confidence 34679999999999999999987653 2678999999997
No 8
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown]
Probab=96.51 E-value=0.005 Score=51.23 Aligned_cols=107 Identities=16% Similarity=0.216 Sum_probs=58.0
Q ss_pred CEEEEcCCCCHHHHHHHHHHhcC-CCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHHHh-------hhC-
Q 028907 85 RAFVYHNFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIAD-------FTF- 155 (202)
Q Consensus 85 ~I~l~~nfLs~~Ec~~Li~~a~~-~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~-------ltg- 155 (202)
-...+..+|++++|..+.+.... ......+..+..|. .++.... ++. ..+..+.+.+-|.+ +.+
T Consensus 3 m~lhIp~VLs~a~va~iRa~l~~A~w~dGrat~g~q~a----~vk~n~q--lp~-~s~l~~~vg~~il~al~~~plff~a 75 (229)
T COG3128 3 MMLHIPEVLSEAQVARIRAALEQAEWVDGRATQGPQGA----QVKNNLQ--LPQ-DSALARELGNEILQALTAHPLFFAA 75 (229)
T ss_pred eEEechhhCCHHHHHHHHHHHhhccccccccccCcchh----hhhcccc--CCc-ccHHHHHHHHHHHHHHHhchhHHHh
Confidence 34568899999999999876532 12111111111121 2222222 121 12333333333322 122
Q ss_pred -CCCCCCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEe
Q 028907 156 -FPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLM 200 (202)
Q Consensus 156 -l~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLi 200 (202)
+| ...++.++.+|+.|++|.+|.|..-... ....|.|+-|.|.
T Consensus 76 ALp-~t~~~P~Fn~Y~eg~~f~fHvDgavr~~-hp~~~~~lrtdls 119 (229)
T COG3128 76 ALP-RTCLPPLFNRYQEGDFFGFHVDGAVRSI-HPGSGFRLRTDLS 119 (229)
T ss_pred hcc-cccCCchhhhccCCCcccccccCccccc-CCCCCceeEeeee
Confidence 33 2567899999999999999999865432 2234557777653
No 9
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=93.87 E-value=0.43 Score=38.46 Aligned_cols=94 Identities=23% Similarity=0.200 Sum_probs=45.0
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC--CCccceeeeCCCCCcccc---------------ceeccce-eeecCC---CcHHHH
Q 028907 86 AFVYHNFLSKEECEYLINLATP--HMRKSTVVDSDTGKSKDS---------------RVRTSSG-TFLARG---RDKIIR 144 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~--~L~~s~v~~~~~g~~~~s---------------~~RtS~~-~wL~~~---~d~vv~ 144 (202)
+++++|||+++|.+.|++.... .+....... ++.... .++-+.. .+-... -.+.+.
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~y~~~~~~~~~~~~~~p~~l~ 78 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELRESAPFRQPTYPM---GKVYSLPRKLCGGLSWVGDGPSYRYSGKRPVRSKPWPPFPEWLS 78 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHHHHS--B-GCCCC---CCECCECCE-SSEEEEEECT--CCCTCC-EECCCEBSCCHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHHhhCCCcCCeEcC---CCEEccceecceeeEEECCCCCeEcCCccccCCCCCCCccHHHH
Confidence 5789999999999999988752 111111110 111000 0111100 000000 123455
Q ss_pred HHHHHHHhhhC-CCCCCCccceeeecCCCccccccccCC
Q 028907 145 DIEKRIADFTF-FPLENGEGLQVLHYEAGQKYEPHFDYF 182 (202)
Q Consensus 145 ~I~~Ri~~ltg-l~~~~~E~lQv~rY~~Gg~Y~~H~D~f 182 (202)
.+.+++....+ .+........+-.|..|+.-.+|.|..
T Consensus 79 ~~~~~~~~~~~~~~~~~~n~~liN~Y~~g~~i~~H~D~~ 117 (194)
T PF13532_consen 79 RLLERLVEATGIPPGWRPNQCLINYYRDGSGIGPHSDDE 117 (194)
T ss_dssp HHHHHHHHHHT-SHSS--SEEEEEEESSTT-EEEE---T
T ss_pred HHHHHHHHHhccccCCCCCEEEEEecCCCCCcCCCCCcc
Confidence 66666665554 222334556777899999999999986
No 10
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.61 E-value=0.25 Score=40.89 Aligned_cols=94 Identities=16% Similarity=0.217 Sum_probs=54.7
Q ss_pred eecCCCEEEEcCCCCHHHHHHHHHHhcCCCcc-------ceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHHHh
Q 028907 80 ISWEPRAFVYHNFLSKEECEYLINLATPHMRK-------STVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIAD 152 (202)
Q Consensus 80 LS~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~-------s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~ 152 (202)
+-..|.+++++||+++||-..+++.....-++ -...+ .+|- .-+...+.+.-.+-.+.+..+|..
T Consensus 8 V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqN-yGGv-------vh~~glipeelP~wLq~~v~kinn 79 (224)
T KOG3200|consen 8 VKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQN-YGGV-------VHKTGLIPEELPPWLQYYVDKINN 79 (224)
T ss_pred ecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhh-cCCc-------cccCCcCccccCHHHHHHHHHhhc
Confidence 44578899999999999999988876432111 01111 0110 001122333234556666666664
Q ss_pred hhCCCCCCCccceeeecCCCccccccccCC
Q 028907 153 FTFFPLENGEGLQVLHYEAGQKYEPHFDYF 182 (202)
Q Consensus 153 ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f 182 (202)
+-=++ +.+-..-|-.|.+||--.||.|+-
T Consensus 80 lglF~-s~~NHVLVNeY~pgqGImPHtDGP 108 (224)
T KOG3200|consen 80 LGLFK-SPANHVLVNEYLPGQGIMPHTDGP 108 (224)
T ss_pred ccccC-CCcceeEeecccCCCCcCcCCCCC
Confidence 32222 234456677799999999999973
No 11
>KOG3710 consensus EGL-Nine (EGLN) protein [Signal transduction mechanisms]
Probab=92.44 E-value=0.66 Score=39.96 Aligned_cols=109 Identities=20% Similarity=0.245 Sum_probs=62.7
Q ss_pred CEEEEcCCCCHHHHHHHHHHhc-----CCCccceeeeCCCCCccccceeccceeeecCCCc--H-------HHHHHHHHH
Q 028907 85 RAFVYHNFLSKEECEYLINLAT-----PHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD--K-------IIRDIEKRI 150 (202)
Q Consensus 85 ~I~l~~nfLs~~Ec~~Li~~a~-----~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d--~-------vv~~I~~Ri 150 (202)
-+.+++|||-.+--..+.+..+ +.+.+..+..+. ....+++|..+.+|+...+. . .++.+....
T Consensus 54 g~~vvd~flg~~~g~~v~~ev~~l~~~G~f~dgql~~~~--~~~~k~iRgd~i~wi~G~e~gc~~i~~L~s~~d~~i~h~ 131 (280)
T KOG3710|consen 54 GICVVDNFLGSETGKFILKEVEALYETGAFRDGQLVSPD--AFHSKDIRGDKITWVGGNEPGCETIMLLPSPIDSVILHC 131 (280)
T ss_pred ceEEEechhhHHHHHHHHHHHHHHHhccCccCceeccCc--CCcchhhccCCceEecCCCCCccceeeecccchhhhhhh
Confidence 4678999998776555444332 234444444322 22234899999999986531 0 111111111
Q ss_pred HhhhCCCCCCCccceeeecC-CCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 151 ADFTFFPLENGEGLQVLHYE-AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 151 ~~ltgl~~~~~E~lQv~rY~-~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
....|-..-.--.--|+.|. .|-.|-.|.|.-. |..|..|.+.||
T Consensus 132 ~~r~~~~~~gRtkAMVAcYPGNGtgYVrHVDNP~-------gDGRcITcIYYl 177 (280)
T KOG3710|consen 132 NGRLGSYIIGRTKAMVACYPGNGTGYVRHVDNPH-------GDGRCITCIYYL 177 (280)
T ss_pred ccccccccccceeEEEEEecCCCceeeEeccCCC-------CCceEEEEEEEc
Confidence 11111111112345688996 5899999999643 467999999997
No 12
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=92.36 E-value=0.69 Score=40.13 Aligned_cols=116 Identities=13% Similarity=0.110 Sum_probs=54.9
Q ss_pred CCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCC--ccccceeccceeeecCCCcHHHHH------HHHHHHhhh
Q 028907 83 EPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGK--SKDSRVRTSSGTFLARGRDKIIRD------IEKRIADFT 154 (202)
Q Consensus 83 ~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~--~~~s~~RtS~~~wL~~~~d~vv~~------I~~Ri~~lt 154 (202)
+-+ +++.++|+++||+.|.+.....+....+.....+. ......|. .+.....++.+.. |...++++.
T Consensus 28 dGy-vvl~~vls~eev~~lr~~i~~~~~~~~~~~~~~~~~~~~~~~~r~---~~~~~~~~~~~~~l~~~p~l~~~~~~Ll 103 (277)
T TIGR02408 28 DGF-LLLENLFSDDEVAALLAEVERMTRDPAIVRDEEAITEPGSNAVRS---IFEVHVLSPILARLVRDPRVANAARQIL 103 (277)
T ss_pred CCE-EECcccCCHHHHHHHHHHHHHHHhcccccCCCcceecCCCCceEE---EecccccCHHHHHHHcChHHHHHHHHHc
Confidence 443 78999999999999999875433221110000000 00011221 1111112343333 334455667
Q ss_pred CCCCCCCccceeeecC-CCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 155 FFPLENGEGLQVLHYE-AGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 155 gl~~~~~E~lQv~rY~-~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
|-+.......-+.+.+ .|+.+.+|.|+..-.........+..|+.++|
T Consensus 104 G~~~~l~~~~l~~kp~~~g~~~~WHQD~~~w~~~~~~p~~~~vt~wiaL 152 (277)
T TIGR02408 104 GSDVYVHQSRINMKPGFKGTGFYWHSDFETWHAEDGMPSMRAVSCSIAL 152 (277)
T ss_pred CCCeEEEeeeeeecCCCCCCCccCCcCCccccccCCCCCcCeEEEEEEc
Confidence 7544222111123444 35688899996321100001123578888876
No 13
>COG3751 EGL-9 Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=91.35 E-value=0.68 Score=40.20 Aligned_cols=104 Identities=15% Similarity=0.118 Sum_probs=56.3
Q ss_pred CCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeccceeeec--CCCc-H------HHHHHHHHH--HhhhCCC-C
Q 028907 91 NFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLA--RGRD-K------IIRDIEKRI--ADFTFFP-L 158 (202)
Q Consensus 91 nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~--~~~d-~------vv~~I~~Ri--~~ltgl~-~ 158 (202)
..++++..+.+.+..-....++.+..+. ........+....-|+. .... + .++.+.... .+++|.. .
T Consensus 55 ~li~r~~~~~~~e~i~~~~~~~~i~r~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~es~r~~~~~~~~lg~l~~ 133 (252)
T COG3751 55 ELITRQVREELGEEIAEAFKEAAILRGG-QIQVFAFLSGDLKDELDPTRSPNLPVQRYLEFSESIRFILGLPQLLGILDV 133 (252)
T ss_pred hhcCHHHHHHHHhhhhhhccccceeccc-cceeeeecchhhhhhhcccccccchHHHHHHHHHHHHHHhchhhhcCccce
Confidence 5555676666665554334444443321 12223334444555555 2221 1 122211111 1223422 2
Q ss_pred CCCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 159 ENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 159 ~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
... ..|+.-|.+|.+|..|-|.+.+. ..|.+|.++|+
T Consensus 134 ~~v-e~~~~~y~~G~~l~~H~D~~~~~------~~R~~~yv~y~ 170 (252)
T COG3751 134 SEV-EGQITVYNPGCFLLKHDDNGRDK------DIRLATYVYYL 170 (252)
T ss_pred eee-eeeeeEecCCceeEeecccCCCc------cceEEEEEecc
Confidence 333 48999999999999999988652 67888888875
No 14
>PF03336 Pox_C4_C10: Poxvirus C4/C10 protein; InterPro: IPR005004 This is a family of proteins expressed by members of the Poxviridae.
Probab=90.10 E-value=0.58 Score=42.17 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=52.1
Q ss_pred cccceeccceeeecCC-CcHHHHHHHHHHHh-hhC-C-CCCCCccceeeecCCCccccccccCCCcccCCCCCCCceEEE
Q 028907 123 KDSRVRTSSGTFLARG-RDKIIRDIEKRIAD-FTF-F-PLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATV 198 (202)
Q Consensus 123 ~~s~~RtS~~~wL~~~-~d~vv~~I~~Ri~~-ltg-l-~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTv 198 (202)
.+...|.|+..-++.. .+++.++|.+.+.. +.. + ...-.+.+.+++|+.|++|..|.|.... ........++
T Consensus 36 ~d~~~r~sk~iv~~~~~~~dI~~~ik~~l~~~lk~~v~~V~V~n~iTfikY~kGd~f~~~~d~~~~----~~~n~~~y~L 111 (339)
T PF03336_consen 36 FDHEFRKSKQIVIEDSLNDDIFSKIKNLLYDELKNVVEDVIVDNTITFIKYEKGDFFDNHRDFIKR----DSKNCLEYHL 111 (339)
T ss_pred ccccccccceEEEeccchHHHHHHHHHHHHHHhhcceeEEEEcceEEEEEEccCcchhhhccccee----ccCCceEEEE
Confidence 3444888888777632 36788888777664 333 1 2244678999999999999999994332 2334567778
Q ss_pred EecC
Q 028907 199 LMYL 202 (202)
Q Consensus 199 LiYL 202 (202)
++||
T Consensus 112 vLyL 115 (339)
T PF03336_consen 112 VLYL 115 (339)
T ss_pred EEEE
Confidence 8776
No 15
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=89.45 E-value=0.19 Score=36.11 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.9
Q ss_pred ccceeeecC---CCccccccccCC
Q 028907 162 EGLQVLHYE---AGQKYEPHFDYF 182 (202)
Q Consensus 162 E~lQv~rY~---~Gg~Y~~H~D~f 182 (202)
+.+++.+|. .|..+.+|.|..
T Consensus 2 ~~~~~~~Y~~~~~~~~~~~H~D~~ 25 (98)
T PF03171_consen 2 SQLRLNRYPPPENGVGIGPHTDDE 25 (98)
T ss_dssp -EEEEEEE-SCCGCEEEEEEEES-
T ss_pred CEEEEEECCCcccCCceeCCCcCC
Confidence 468999999 899999999984
No 16
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=88.53 E-value=0.18 Score=36.34 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=16.8
Q ss_pred ceeeecCCCccccccccCC
Q 028907 164 LQVLHYEAGQKYEPHFDYF 182 (202)
Q Consensus 164 lQv~rY~~Gg~Y~~H~D~f 182 (202)
.|+.+|++|++|.||.|..
T Consensus 1 ~~~~~y~~G~~~~~H~D~~ 19 (100)
T PF13640_consen 1 MQLNRYPPGGFFGPHTDNS 19 (100)
T ss_dssp -EEEEEETTEEEEEEESSS
T ss_pred CEEEEECcCCEEeeeECCC
Confidence 4789999999999999994
No 17
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=85.64 E-value=1.2 Score=38.53 Aligned_cols=92 Identities=23% Similarity=0.328 Sum_probs=52.3
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcCC-C--ccceeeeCCCCC---ccccceeccceeeecCCCcHHHHHHHHHHHhhhCCC
Q 028907 84 PRAFVYHNFLSKEECEYLINLATPH-M--RKSTVVDSDTGK---SKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFFP 157 (202)
Q Consensus 84 P~I~l~~nfLs~~Ec~~Li~~a~~~-L--~~s~v~~~~~g~---~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~ltgl~ 157 (202)
|-+.++|||||.+|-..|+++...- . ..|.-...+-|. ..-.+.|+..-+=+ ....+-+.+|+.+.-++.
T Consensus 72 pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKvNFkk~Klkt~~F~G~----P~~~~~v~rrm~~yp~l~ 147 (306)
T KOG3959|consen 72 PGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKVNFKKKKLKTDTFVGM----PEYADMVLRRMSEYPVLK 147 (306)
T ss_pred CCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCccchhhhhhccCcccCC----chHHHHHHHHhhccchhh
Confidence 7899999999999999999987531 1 111111000111 11233444443333 345666677777765542
Q ss_pred CCCCccce--eeecCC--CccccccccC
Q 028907 158 LENGEGLQ--VLHYEA--GQKYEPHFDY 181 (202)
Q Consensus 158 ~~~~E~lQ--v~rY~~--Gg~Y~~H~D~ 181 (202)
. ..++. =+-|++ |..-+||.|-
T Consensus 148 g--fqp~EqCnLeYep~kgsaIdpH~DD 173 (306)
T KOG3959|consen 148 G--FQPFEQCNLEYEPVKGSAIDPHQDD 173 (306)
T ss_pred c--cCcHHHcCcccccccCCccCccccc
Confidence 1 11111 134765 8899999985
No 18
>PHA02866 Hypothetical protein; Provisional
Probab=83.04 E-value=1.7 Score=38.79 Aligned_cols=83 Identities=13% Similarity=0.199 Sum_probs=53.7
Q ss_pred CccceeeeCCCC-CccccceeccceeeecCCCcHHHHHHHHHHHhhh--CCCCCCCccceeeecCCCccccccccCCCcc
Q 028907 109 MRKSTVVDSDTG-KSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT--FFPLENGEGLQVLHYEAGQKYEPHFDYFMDE 185 (202)
Q Consensus 109 L~~s~v~~~~~g-~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~lt--gl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~ 185 (202)
+.+|.+.+...| ..+....|.++.+ +++..++. |+.++. .-+.--.+.+.+++|..|.+|.-|+|....+
T Consensus 32 w~~s~i~~~~~~i~~~~~~~~k~k~~------~~v~~~v~-~~~~~~~~~~dv~v~~~~t~vk~~kg~~fdn~~~~~~~~ 104 (333)
T PHA02866 32 WEDSDILRHRQFIPCEILVLEKSERT------KQVFGAVK-RVLASSLTDYDVYVCEHLTIVKCFKGVGFDNRFSILTED 104 (333)
T ss_pred cchhhhhhhccCCceeeeehhhhhhh------HHHHHHHH-HHHhccCCCccEEEeeeEEEEEEecccccccceeEEEec
Confidence 777878765444 4456666777654 56776665 443322 2233346779999999999999999986543
Q ss_pred cCCCCCCCceEEEEecC
Q 028907 186 FNTKNGGQRMATVLMYL 202 (202)
Q Consensus 186 ~~~~~~g~R~aTvLiYL 202 (202)
....+-.++++||
T Consensus 105 ----~~~~~~Y~LvLyL 117 (333)
T PHA02866 105 ----RHRGREYTLVLHL 117 (333)
T ss_pred ----cCCceEEEEEEEE
Confidence 2234566677765
No 19
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=79.99 E-value=9.4 Score=32.32 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=58.2
Q ss_pred cCCCEEEEcCCCCHHHHHHHHHHhcC-----CCccceeeeCC--------CC--Cc--cccceeccce------eeecCC
Q 028907 82 WEPRAFVYHNFLSKEECEYLINLATP-----HMRKSTVVDSD--------TG--KS--KDSRVRTSSG------TFLARG 138 (202)
Q Consensus 82 ~~P~I~l~~nfLs~~Ec~~Li~~a~~-----~L~~s~v~~~~--------~g--~~--~~s~~RtS~~------~wL~~~ 138 (202)
..|-++++++|. .+|.+.|++.... .+.+-.+.++. -| .. ....+|=|.. -|-+
T Consensus 16 ~~~g~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~~~~~gg~~msv~mt~~G~~~W~~d~~~YrYs~~~~~~~~pwp~-- 92 (213)
T PRK15401 16 LAPGAVLLRGFA-LAAAEALLAAIEAVAAQAPFRHMVTPGGYTMSVAMTNCGALGWVTDRRGYRYSPIDPLTGKPWPA-- 92 (213)
T ss_pred cCCCcEEeCCCC-HHHHHHHHHHHHHHHhcCCccceecCCCCcceeEEeccccceEecCCCCcccCCcCCCCCCCCCC--
Confidence 467799999996 7887777765432 23221121110 01 00 0112332221 1100
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccCC
Q 028907 139 RDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYF 182 (202)
Q Consensus 139 ~d~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f 182 (202)
..+.+..|.++++..+|.+.-..+..-|-.|.+|+.-.+|.|..
T Consensus 93 ~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~~mg~H~D~~ 136 (213)
T PRK15401 93 MPASFLALAQRAAAAAGFPGFQPDACLINRYAPGAKLSLHQDKD 136 (213)
T ss_pred chHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcCccccccCCC
Confidence 12368889999988888754455667788899999999999963
No 20
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=76.29 E-value=2.2 Score=33.59 Aligned_cols=22 Identities=36% Similarity=0.264 Sum_probs=17.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028907 86 AFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
.+++.|+|+++||+.|.+....
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~~ 27 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELDR 27 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHHH
Confidence 4789999999999999887753
No 21
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=71.85 E-value=12 Score=25.03 Aligned_cols=27 Identities=19% Similarity=0.109 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHH
Q 028907 1 MAKPRYSRFPTRKSSSSTLILTLLIMF 27 (202)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (202)
|+|.|..+-.......|.+.++=|+++
T Consensus 1 Makkk~~~~~~~~~~~WlvtyaDlmTL 27 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLVTYADLMTL 27 (58)
T ss_pred CCCCCCCCCCCCCCccHHHHHHHHHHH
Confidence 777776333333444454444433333
No 22
>TIGR01762 chlorin-enz chlorinating enzymes. This model represents a a group of highly homologous enzymes related to dioxygenases which chlorinate amino acid methyl groups. BarB1 and BarB2 are proposed to trichlorinate one of the methyl groups of a leucine residue in the biosynthesis of barbamide in the cyanobacterium Lyngbya majuscula. SyrB2 is proposed to chlorinate the methyl group of threonine in the biosynthesis of syringomycin in Pseudomonas syringae. CmaB is proposed to chlorinate the beta-methyl group of alloisoleucine in the process of ring closure in the biosynthesis of coronamic acid, a component of coronatine also in Pseudomonas syringae.
Probab=70.87 E-value=35 Score=29.92 Aligned_cols=22 Identities=14% Similarity=-0.099 Sum_probs=18.8
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028907 86 AFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
.+++.++++++|++.|.+.++.
T Consensus 16 yv~~~~~~s~eei~~L~~~~~~ 37 (288)
T TIGR01762 16 FIGPFTLYSPEEMKETWKRIRL 37 (288)
T ss_pred EEeCcCCCCHHHHHHHHHHHHH
Confidence 4678999999999999987753
No 23
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=61.15 E-value=13 Score=30.11 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccC
Q 028907 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDY 181 (202)
Q Consensus 141 ~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~ 181 (202)
+.+..|.++++..+|.+....+..-|-.|.+|+.-.+|.|.
T Consensus 74 ~~L~~L~~~v~~~~g~~~~~~n~~LvN~Y~~Gd~mg~H~D~ 114 (169)
T TIGR00568 74 QDLGDLCERVATAAGFPDFQPDACLVNRYAPGATLSLHQDR 114 (169)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCEEEEEeecCCCcccccccc
Confidence 67889999999999986556677778889999999999995
No 24
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=52.33 E-value=20 Score=24.27 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhccc
Q 028907 12 RKSSSSTLILTLLIMFTFAILILLAFGIL 40 (202)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (202)
+-|.-+||++.++...+|.|++-+..+||
T Consensus 13 kFW~YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 13 KFWTYFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677799999998888888877776664
No 25
>COG2850 Uncharacterized conserved protein [Function unknown]
Probab=38.75 E-value=48 Score=30.52 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhhhCCCCCCCccceeeecC-CCccccccccCCCc
Q 028907 140 DKIIRDIEKRIADFTFFPLENGEGLQVLHYE-AGQKYEPHFDYFMD 184 (202)
Q Consensus 140 d~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~-~Gg~Y~~H~D~f~~ 184 (202)
+|-++.+.+ .+-.+|.-...++-|. |- +||-|++|+|..+.
T Consensus 100 ~p~v~~l~~---~FrflP~wr~ddiMIS-~a~~GGgvg~H~D~YDV 141 (383)
T COG2850 100 HPEVAALME---PFRFLPDWRIDDIMIS-FAAPGGGVGPHFDQYDV 141 (383)
T ss_pred CHHHHHHHH---HhccCccccccceEEE-EecCCCccCccccchhe
Confidence 344555555 4456776666677777 65 69999999998653
No 26
>COG1993 PII-like signaling protein [Signal transduction mechanisms]
Probab=33.06 E-value=81 Score=24.01 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=44.1
Q ss_pred HHHHHHHhcC-CCccceeeeCCCCCccccceeccceeeecCC---------CcHHHHHHHHHHHhhhCCCCCCCccceee
Q 028907 98 CEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARG---------RDKIIRDIEKRIADFTFFPLENGEGLQVL 167 (202)
Q Consensus 98 c~~Li~~a~~-~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~---------~d~vv~~I~~Ri~~ltgl~~~~~E~lQv~ 167 (202)
-++|++.+.. .+..++|..+-.|-..+....+++..-|..+ ..+-+.++...+..+.+...-..|+.+|+
T Consensus 25 ~~~iverlre~Gi~GATVlRGI~GfG~~~~~h~~~if~Ls~~LPVviEvVD~eekI~~~l~~l~e~~~~~lit~e~v~V~ 104 (109)
T COG1993 25 YEAIVERLREEGIRGATVLRGIAGFGKDGKIHGSKIFRLSTDLPVVVEVVDEEEKIERFLPELDEIIKNGLITLEPVEVV 104 (109)
T ss_pred HHHHHHHHHHcCcCceeeeeeeeccCCCCcccccchhhccCCCCEEEEEeCCHHHHHHHHHHHHHHhhcceEEEEEEEEE
Confidence 4567777754 6777888765444333333333433333322 12445566666666666666678999999
Q ss_pred ecCCC
Q 028907 168 HYEAG 172 (202)
Q Consensus 168 rY~~G 172 (202)
.|+.+
T Consensus 105 ~~gs~ 109 (109)
T COG1993 105 YYGSR 109 (109)
T ss_pred EccCC
Confidence 99853
No 27
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair]
Probab=32.81 E-value=49 Score=27.64 Aligned_cols=58 Identities=19% Similarity=0.106 Sum_probs=41.3
Q ss_pred eeccceeeecCCCcHHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccCCCc
Q 028907 127 VRTSSGTFLARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMD 184 (202)
Q Consensus 127 ~RtS~~~wL~~~~d~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~ 184 (202)
+|.+...-....-.|..-.+...+...+|.+....|..-+-.|.+|+.-.+|.|--..
T Consensus 71 y~y~~~~p~~~~p~p~l~~~~~~~~~~~g~~~~~~ea~Lvn~Y~pGd~ig~HqD~~e~ 128 (194)
T COG3145 71 YRYSLRSPLTGKPWPPLLALFHDLFGAAGYPFEGPEAVLVNRYRPGASIGWHQDKDEE 128 (194)
T ss_pred ccccccccCCCCCCCccHHHHHHHHHHhcCCCCChhheeEEeccCCCccccccccccc
Confidence 4555444333322244445666677788999888899999999999999999997543
No 28
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=29.84 E-value=68 Score=28.42 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=16.9
Q ss_pred EcCCCCHHHHHHHHHHhcC
Q 028907 89 YHNFLSKEECEYLINLATP 107 (202)
Q Consensus 89 ~~nfLs~~Ec~~Li~~a~~ 107 (202)
..||||+.|+++|.+.++.
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAED 65 (284)
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 4699999999999999864
No 29
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=29.48 E-value=77 Score=23.13 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028907 17 STLILTLLIMFTFAILILLA 36 (202)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~ 36 (202)
+-..|++|+++.|+||+++.
T Consensus 42 FWv~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 42 FWVSLAAFVVFLFLILLYMS 61 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 34556667777777766664
No 30
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=28.17 E-value=94 Score=26.16 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=4.2
Q ss_pred CCCCCC
Q 028907 1 MAKPRY 6 (202)
Q Consensus 1 ~~~~~~ 6 (202)
|+|.|+
T Consensus 1 M~~k~~ 6 (230)
T PRK06925 1 MERRKR 6 (230)
T ss_pred CCCCcc
Confidence 777765
No 31
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.39 E-value=50 Score=25.25 Aligned_cols=19 Identities=16% Similarity=0.445 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 028907 19 LILTLLIMFTFAILILLAF 37 (202)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~ 37 (202)
++|++++.+.|++|+++..
T Consensus 3 ~l~~iii~~i~l~~~~~~~ 21 (130)
T PF12273_consen 3 VLFAIIIVAILLFLFLFYC 21 (130)
T ss_pred eeHHHHHHHHHHHHHHHHH
No 32
>PF04194 PDCD2_C: Programmed cell death protein 2, C-terminal putative domain ; InterPro: IPR007320 PDCD2 is localized predominantly in the cytosol of cells situated at the opposite pole of the germinal centre from the centroblasts as well as in cells in the mantle zone. It has been shown to interact with BCL6, an evolutionarily conserved Kruppel-type zinc finger protein that functions as a strong transcriptional repressor and is required for germinal centre development. The rat homologue, Rp8, is associated with programmed cell death in thymocytes.; GO: 0005737 cytoplasm
Probab=26.90 E-value=78 Score=25.33 Aligned_cols=31 Identities=32% Similarity=0.278 Sum_probs=23.3
Q ss_pred CcHHHHHHHHHHHhhhCCCCCCCccceeeecCCCcccccc
Q 028907 139 RDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPH 178 (202)
Q Consensus 139 ~d~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H 178 (202)
.|....++.+||+. .+=||+||..||.=-+=
T Consensus 56 ~D~~f~~F~~rl~~---------~P~QvlRY~~gG~PLw~ 86 (164)
T PF04194_consen 56 VDKAFLKFQKRLSR---------NPEQVLRYCRGGKPLWI 86 (164)
T ss_pred cCHHHHHHHHHHhc---------CCCeEEEECCCCeEEEe
Confidence 46788888888775 35799999999984333
No 33
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=26.88 E-value=29 Score=25.00 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=12.9
Q ss_pred EcCCCCHHHHHHHHH
Q 028907 89 YHNFLSKEECEYLIN 103 (202)
Q Consensus 89 ~~nfLs~~Ec~~Li~ 103 (202)
-++|+|.+|||.+..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 478999999999865
No 34
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=26.49 E-value=79 Score=18.28 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=4.4
Q ss_pred CCCCCCCchHHHHHHHHHHH
Q 028907 8 RFPTRKSSSSTLILTLLIMF 27 (202)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~ 27 (202)
+...++..-+||+=.+..+.
T Consensus 7 ~~~~~~~~GFTLiEllVa~~ 26 (31)
T PF13544_consen 7 RRRRRRQRGFTLIELLVAMA 26 (31)
T ss_dssp -----------HHHHHHHHH
T ss_pred cccccccCCccHHHHHHHHH
Confidence 33334445556665544333
No 35
>PF15240 Pro-rich: Proline-rich
Probab=24.83 E-value=28 Score=28.81 Aligned_cols=16 Identities=31% Similarity=0.712 Sum_probs=8.1
Q ss_pred HHHHHHhccccCCCCC
Q 028907 31 ILILLAFGILSMPSSS 46 (202)
Q Consensus 31 ~~~~~~~~~~~~~~~~ 46 (202)
|||||.+++|+|.+|-
T Consensus 2 LlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQ 17 (179)
T ss_pred hhHHHHHHHHHhhhcc
Confidence 3455555555554443
No 36
>PRK06489 hypothetical protein; Provisional
Probab=24.62 E-value=2.2e+02 Score=25.00 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=13.2
Q ss_pred CCCEEEEcCCCCHHHH
Q 028907 83 EPRAFVYHNFLSKEEC 98 (202)
Q Consensus 83 ~P~I~l~~nfLs~~Ec 98 (202)
.|.|+++|++....++
T Consensus 69 gpplvllHG~~~~~~~ 84 (360)
T PRK06489 69 DNAVLVLHGTGGSGKS 84 (360)
T ss_pred CCeEEEeCCCCCchhh
Confidence 4779999999987655
No 37
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=24.24 E-value=61 Score=24.42 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHhcccc
Q 028907 24 LIMFTFAILILLAFGILS 41 (202)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~ 41 (202)
+.+++++++|++++-|+.
T Consensus 4 l~il~llLll~l~asl~~ 21 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLA 21 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555543
No 38
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=23.74 E-value=1.8e+02 Score=17.66 Aligned_cols=27 Identities=15% Similarity=0.351 Sum_probs=20.9
Q ss_pred EeecCCCEEEEcCCCCHHHHHHHHHHhc
Q 028907 79 VISWEPRAFVYHNFLSKEECEYLINLAT 106 (202)
Q Consensus 79 ~LS~~P~I~l~~nfLs~~Ec~~Li~~a~ 106 (202)
+|..+-.|.+|+|| +++..+.|+.+|.
T Consensus 9 TIfY~G~V~Vfd~v-~~~Ka~~im~lA~ 35 (36)
T PF06200_consen 9 TIFYGGQVCVFDDV-PPDKAQEIMLLAS 35 (36)
T ss_pred EEEECCEEEEeCCC-CHHHHHHHHHHhc
Confidence 56778888888765 7788888888774
No 39
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.88 E-value=85 Score=26.58 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=14.9
Q ss_pred CCchH-HHHHHHHHHHHHHHHHHHH
Q 028907 13 KSSSS-TLILTLLIMFTFAILILLA 36 (202)
Q Consensus 13 ~~~~~-~~~~~~~~~~~~~~~~~~~ 36 (202)
..|++ |+++..+-++.|+++.++.
T Consensus 149 r~STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 149 RASTWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34554 6666666666777766653
No 40
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=21.70 E-value=61 Score=24.75 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=11.8
Q ss_pred EcCCCCHHHHHHH
Q 028907 89 YHNFLSKEECEYL 101 (202)
Q Consensus 89 ~~nfLs~~Ec~~L 101 (202)
-.||||++|++.|
T Consensus 49 ~~dFLt~eE~~~i 61 (114)
T PF03754_consen 49 DNDFLTEEEKRII 61 (114)
T ss_pred ccccCCHHHHHHH
Confidence 3689999999999
No 41
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=20.84 E-value=1.2e+02 Score=19.36 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.2
Q ss_pred EEEeecCCCEEEEcCCCCHHHHHHHHHHhcC
Q 028907 77 VEVISWEPRAFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 77 vE~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
-+.+-|+| ++-+++.+.+.++..|+.
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s 53 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKS 53 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHh
Confidence 56778899 489999999999998864
No 42
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=20.51 E-value=92 Score=23.47 Aligned_cols=15 Identities=33% Similarity=0.485 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHhc
Q 028907 24 LIMFTFAILILLAFG 38 (202)
Q Consensus 24 ~~~~~~~~~~~~~~~ 38 (202)
|+-++++++++++++
T Consensus 71 ~~~~ti~lv~~~~~~ 85 (103)
T PF12955_consen 71 FAGFTIALVVLVAGA 85 (103)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444333
Done!