Query 028907
Match_columns 202
No_of_seqs 197 out of 1094
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 06:42:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028907.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028907hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jig_A Prolyl-4 hydroxylase; h 100.0 5.2E-32 1.8E-36 226.2 14.0 132 71-202 7-140 (224)
2 3itq_A Prolyl 4-hydroxylase, a 100.0 2.5E-30 8.4E-35 216.6 9.7 124 72-202 27-150 (216)
3 3dkq_A PKHD-type hydroxylase S 99.6 2.6E-16 8.8E-21 133.6 5.5 117 78-202 13-138 (243)
4 2hbt_A EGL nine homolog 1; pro 99.4 1.6E-12 5.4E-17 110.3 11.8 110 84-202 26-151 (247)
5 3kt7_A PKHD-type hydroxylase T 95.9 0.0094 3.2E-07 56.2 5.7 48 146-202 106-155 (633)
6 2iuw_A Alkylated repair protei 95.7 0.1 3.5E-06 43.3 10.7 90 85-182 41-147 (238)
7 3tht_A Alkylated DNA repair pr 95.1 0.11 3.8E-06 45.6 9.3 98 81-183 108-219 (345)
8 3s57_A Alpha-ketoglutarate-dep 94.7 0.34 1.2E-05 39.2 10.9 97 78-182 4-121 (204)
9 3i3q_A Alpha-ketoglutarate-dep 83.2 4.4 0.00015 32.8 7.8 41 141-181 84-124 (211)
10 2fct_A Syringomycin biosynthes 74.6 9 0.00031 31.8 7.3 22 86-107 23-44 (313)
11 3emr_A ECTD; double stranded b 71.0 1.2 4.1E-05 37.9 1.0 29 78-107 41-69 (310)
12 2rdq_A 1-deoxypentalenic acid 65.9 6.1 0.00021 32.4 4.3 29 78-107 26-54 (288)
13 2rg4_A Uncharacterized protein 64.6 9.2 0.00032 30.7 5.0 19 163-181 104-122 (216)
14 1o51_A Hypothetical protein TM 46.9 18 0.0006 26.4 3.5 74 97-170 31-114 (114)
15 3dgp_A RNA polymerase II trans 26.8 43 0.0015 23.0 2.6 22 86-107 23-44 (80)
16 2opw_A Phyhd1 protein; double- 23.2 54 0.0018 26.6 3.1 22 86-107 17-38 (291)
17 3nnf_A CURA; non-HAEM Fe(II)/a 22.8 18 0.00061 31.5 -0.0 92 87-180 43-141 (344)
18 3bho_A Cleavage and polyadenyl 20.7 98 0.0034 25.0 4.0 46 136-183 93-138 (208)
19 3dom_A RNA polymerase II trans 20.6 65 0.0022 23.4 2.6 22 86-107 51-72 (108)
20 2a1x_A Phytanoyl-COA dioxygena 20.5 65 0.0022 26.4 3.0 27 80-107 31-57 (308)
No 1
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=99.98 E-value=5.2e-32 Score=226.20 Aligned_cols=132 Identities=58% Similarity=0.993 Sum_probs=121.4
Q ss_pred CCCCceEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHH
Q 028907 71 GRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRI 150 (202)
Q Consensus 71 ~~~~~~vE~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri 150 (202)
.+++.|+|+||++|+|++||||||++||++|+++++++++++++.++.+|....+++|+|+++|++...++++++|++||
T Consensus 7 ~~~~~k~e~ls~~P~i~~~~~fLs~~Ec~~li~~~~~~~~~s~v~~~~~g~~~~~~~R~s~~~~l~~~~~~~~~~i~~ri 86 (224)
T 2jig_A 7 EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTSTGTWFAKGEDSVISKIEKRV 86 (224)
T ss_dssp CCCCCCEEEEETTTTEEEETTCSCHHHHHHHHHHHGGGCEECEEEETTTTEEEECSSBCSEEEECCTTCSHHHHHHHHHH
T ss_pred cccCcceEEEeCCCCEEEEcccCCHHHHHHHHHHhhccCeeeeeecCCCCcccccCCEEEeeeEecCCCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999887667777889999999999987789999999999
Q ss_pred HhhhCCCCCCCccceeeecCCCccccccccCCCcccCC--CCCCCceEEEEecC
Q 028907 151 ADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT--KNGGQRMATVLMYL 202 (202)
Q Consensus 151 ~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~--~~~g~R~aTvLiYL 202 (202)
.+++|+|...+|.+||+||++||+|++|+|++....+. ..+++|++|+|+||
T Consensus 87 ~~~~gl~~~~~e~~qv~rY~~G~~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YL 140 (224)
T 2jig_A 87 AQVTMIPLENHEGLQVLHYHDGQKYEPHYDYFHDPVNAGPEHGGQRVVTMLMYL 140 (224)
T ss_dssp HHHHTCCGGGBCCCEEEEEETTCCEEEECCSSCCTTSSSCCCCSCEEEEEEEEC
T ss_pred HHHhCCCcccccceEEEecCCCccccCcccCCCCccccccccCCCeEEEEEEEe
Confidence 99999999999999999999999999999998754322 45689999999998
No 2
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=99.96 E-value=2.5e-30 Score=216.58 Aligned_cols=124 Identities=38% Similarity=0.625 Sum_probs=106.2
Q ss_pred CCCceEEEeecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHHH
Q 028907 72 RAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIA 151 (202)
Q Consensus 72 ~~~~~vE~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~ 151 (202)
...++++++|++|+|++||||||++||++|+++|++++++|++... ...+++|+|+++|+++ ++++++|++||+
T Consensus 27 ~r~v~v~~l~~~P~i~~~~~fLs~~Ec~~Li~~a~~~l~~s~v~~~----~~~~~~RtS~~~wl~~--~~~v~~i~~Ri~ 100 (216)
T 3itq_A 27 DREIQIISKFEEPLIVVLGNVLSDEECDELIELSKSKLARSKVGSS----RDVNDIRTSSGAFLDD--NELTAKIEKRIS 100 (216)
T ss_dssp SCEEEEEEEETTTTEEEEESCSCHHHHHHHHHHHHHHHC------------CCCCGGGTTCEECCC--CHHHHHHHHHHH
T ss_pred CceEEEEEeeCCCCEEEECCcCCHHHHHHHHHHhhcccccceeccC----CccCCcEeeeeEEeCC--cHHHHHHHHHHH
Confidence 4677899999999999999999999999999999999999988321 3567899999999997 899999999999
Q ss_pred hhhCCCCCCCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 152 DFTFFPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 152 ~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
+++|++.+++|.+||+||++||+|++|+|++.... ...+|+|++|+++||
T Consensus 101 ~~~gl~~~~~E~lqv~~Y~~G~~y~~H~D~~~~~~-~~~~~~R~~T~l~YL 150 (216)
T 3itq_A 101 SIMNVPASHGEGLHILNYEVDQQYKAHYDYFAEHS-RSAANNRISTLVMYL 150 (216)
T ss_dssp HHHTSCGGGBCCCEEEEECBTCCEEEECSSCCTTS-GGGGGCEEEEEEEEC
T ss_pred HhcCceeccccceeEEEeCCCCccccccCCCcCCC-cccCCceEEEEEEec
Confidence 99999999999999999999999999999987532 123589999999998
No 3
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=99.62 E-value=2.6e-16 Score=133.65 Aligned_cols=117 Identities=13% Similarity=0.107 Sum_probs=86.9
Q ss_pred EEeecCCCEEEEcCCCCHHHHHHHHHHhcC-CCccceeeeCCCCCccccceeccceeeecCCCcHHHHHHHHHHHhhhCC
Q 028907 78 EVISWEPRAFVYHNFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTFF 156 (202)
Q Consensus 78 E~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~-~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d~vv~~I~~Ri~~ltgl 156 (202)
|-+-.++.+++++||||++||++|++.++. .+.++.+. +......+|.+ .|+.. .++++++|.+||.++++.
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t----~g~~~~~vr~n--~~l~~-d~~~~~~l~~~i~~~l~~ 85 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQT----SGAMATTRKRN--QQLDK-DDPVAVALGQQIMDRLLA 85 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCC----SSBSSCCCEEE--EECCT-TCHHHHHHHHHHHHHHHT
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCccc----CCCccccceee--eEECC-CCHHHHHHHHHHHHHHcc
Confidence 445668999999999999999999999964 34433332 22233445554 46664 468999999999998876
Q ss_pred C--------CCCCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 157 P--------LENGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 157 ~--------~~~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
. ....|++|++||++|++|++|+|++...... .+.+|.+|+++||
T Consensus 86 ~~~f~~~~L~~~~e~~~~~rY~~G~~y~~H~D~~~~~~~~-~~~~r~~T~~lYL 138 (243)
T 3dkq_A 86 HPQFVSAALPLQFYPPLFNRYQGGETFGYHIDNAIRSTPD-GMIRTDLSATLFL 138 (243)
T ss_dssp CHHHHHHHCEEEEEEEEEEEECTTCEEEEECBCSEEEETT-EEEECCEEEEEEC
T ss_pred CcchhhcccccccccceEEEECCCCeeccCCCCCCCCCCC-ccccceEEEEEEe
Confidence 6 2457889999999999999999998653210 1246899999998
No 4
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=99.41 E-value=1.6e-12 Score=110.29 Aligned_cols=110 Identities=18% Similarity=0.244 Sum_probs=78.9
Q ss_pred CCEEEEcCCCCHHHHHHHHHHhcC-----CCccceeeeCCCCCccccceeccceeeecCCCc--H----HHHHHHHHHHh
Q 028907 84 PRAFVYHNFLSKEECEYLINLATP-----HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRD--K----IIRDIEKRIAD 152 (202)
Q Consensus 84 P~I~l~~nfLs~~Ec~~Li~~a~~-----~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~~d--~----vv~~I~~Ri~~ 152 (202)
+.+++++|||+++||+.|++.+.. .++++.+... +.....++|+++.+|++.... + +.+++.+.+..
T Consensus 26 ~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~~--~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l~~~ 103 (247)
T 2hbt_A 26 HGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVSQ--KSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDLIRH 103 (247)
T ss_dssp TSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEEC--CSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCCHHHHHHHHHHHHhhhhcCCccccccccc--cccccccccccceeeecccccchhHHHHHHHHHHHHHHH
Confidence 457899999999999999998863 4677777552 234567899999999997542 2 23344433333
Q ss_pred hh---CCCC-CCCccceeeecCC-CccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 153 FT---FFPL-ENGEGLQVLHYEA-GQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 153 lt---gl~~-~~~E~lQv~rY~~-Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
+. |+.. ...+.+|+++|++ |++|.+|.|... +++|.+|+++||
T Consensus 104 ln~~lGl~~i~~~~e~~~~~Y~~~G~~y~~H~D~~~-------~~~R~~T~vlYL 151 (247)
T 2hbt_A 104 CNGKLGSYKINGRTKAMVACYPGNGTGYVRHVDNPN-------GDGRCVTCIYYL 151 (247)
T ss_dssp TTTTSTTCCEEEECCEEEEEECSSSCCEEEECSSCS-------CCSEEEEEEEEC
T ss_pred HhhhcCcccccccceEEEEEecCCCCcccccccCCC-------CCCceEEEEEEe
Confidence 22 3221 1135699999996 999999999832 368999999998
No 5
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=95.88 E-value=0.0094 Score=56.21 Aligned_cols=48 Identities=21% Similarity=0.296 Sum_probs=37.4
Q ss_pred HHHHHHhhhCC-CCC-CCccceeeecCCCccccccccCCCcccCCCCCCCceEEEEecC
Q 028907 146 IEKRIADFTFF-PLE-NGEGLQVLHYEAGQKYEPHFDYFMDEFNTKNGGQRMATVLMYL 202 (202)
Q Consensus 146 I~~Ri~~ltgl-~~~-~~E~lQv~rY~~Gg~Y~~H~D~f~~~~~~~~~g~R~aTvLiYL 202 (202)
+.+.++++||+ ++. .--.+++.+|+.|++|.+|.|.+ +.|..|+++||
T Consensus 106 Fr~~Ls~iTGi~~Lsg~~~D~~~a~Y~~G~fL~~H~D~~---------~~RrvS~VLYL 155 (633)
T 3kt7_A 106 YRDFFGYVTKAGKLSGSKTDMSINTYTKGCHLLTHDDVI---------GSRRISFILYL 155 (633)
T ss_dssp HHHHHHHHHTCCCCCSSCCCEEEEEECTTCEEEEECCCC---------TTEEEEEEEEC
T ss_pred HHHHHHHHhCCcccCCCceeEEEEEeCCCCeeeecCCCC---------CCeEEEEEEEc
Confidence 44456778998 443 23459999999999999999954 35999999997
No 6
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=95.67 E-value=0.1 Score=43.30 Aligned_cols=90 Identities=16% Similarity=0.212 Sum_probs=56.9
Q ss_pred CEEEEcCCCCHHHHHHHHHHhc--CCCccceeeeCCCCCccccceeccceeeecC--------------CCcHHHHHHHH
Q 028907 85 RAFVYHNFLSKEECEYLINLAT--PHMRKSTVVDSDTGKSKDSRVRTSSGTFLAR--------------GRDKIIRDIEK 148 (202)
Q Consensus 85 ~I~l~~nfLs~~Ec~~Li~~a~--~~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~--------------~~d~vv~~I~~ 148 (202)
.+.+++|||+++|.+.|.+... -.+....... -|+......++ +|+.. .-.+.+..|.+
T Consensus 41 gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~--~g~~~~~~R~~---~~~g~~~Y~Ys~~~~~~~p~wp~~l~~l~~ 115 (238)
T 2iuw_A 41 RVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIR--EDITYQQPRLT---AWYGELPYTYSRITMEPNPHWHPVLRTLKN 115 (238)
T ss_dssp EEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEES--SSCEEECSSEE---EEEECCCTTSCHHHHCCBSSCCHHHHHHHH
T ss_pred cEEEECCCCCHHHHHHHHHHHHHhCCCccCceec--CCcccccCCee---EEcCCCccccCCcccCCCCCCCHHHHHHHH
Confidence 4999999999999999988753 2233222211 12222221111 23321 11366778888
Q ss_pred HHHhhhCCCCCCCccceeeecCCCc-cccccccCC
Q 028907 149 RIADFTFFPLENGEGLQVLHYEAGQ-KYEPHFDYF 182 (202)
Q Consensus 149 Ri~~ltgl~~~~~E~lQv~rY~~Gg-~Y~~H~D~f 182 (202)
++++.+|.+ .+..-+-.|..|+ .-.+|.|..
T Consensus 116 ~~~~~~g~~---~n~~LvN~Y~~G~d~i~~H~D~~ 147 (238)
T 2iuw_A 116 RIEENTGHT---FNSLLCNLYRNEKDSVDWHSDDE 147 (238)
T ss_dssp HHHHHHSCC---CCEEEEEEECSTTCCEEEECCCC
T ss_pred HHHHHhCCC---CCEEEEEEECCCCCceeCCcCCh
Confidence 888888754 3456788899997 999999973
No 7
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=95.05 E-value=0.11 Score=45.62 Aligned_cols=98 Identities=16% Similarity=0.179 Sum_probs=52.2
Q ss_pred ecCCCEEEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCCccccceec---------cce-----eeecCCCcHHHHHH
Q 028907 81 SWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRT---------SSG-----TFLARGRDKIIRDI 146 (202)
Q Consensus 81 S~~P~I~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~~~~s~~Rt---------S~~-----~wL~~~~d~vv~~I 146 (202)
..-|-+.+++||||++|.+.|++.....-.+..+. |....+..|. +.. ..+...-.+....|
T Consensus 108 ~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~~~~~----~~~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L~~l 183 (345)
T 3tht_A 108 ALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQN----SQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESF 183 (345)
T ss_dssp SCCTTEEEETTCSCHHHHHHHHTTCC--------------------CEEECCC------------------CCCHHHHHH
T ss_pred cCCCceEEEcCcCCHHHHHHHHHhcccCCcccccc----CcccccCceEEEECCcccccccccccCCCCCcCcCHHHHHH
Confidence 44567999999999999999987654211111111 1111111111 100 00111123456777
Q ss_pred HHHHHhhhCCCCCCCccceeeecCCCccccccccCCC
Q 028907 147 EKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM 183 (202)
Q Consensus 147 ~~Ri~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~ 183 (202)
.+|+.+. |+.....+..-+..|.+|+.-.+|.|...
T Consensus 184 ~~r~~~~-~~~~~~~n~~lvN~Y~~G~~I~~H~D~~~ 219 (345)
T 3tht_A 184 LEKWLRK-GYIKHKPDQMTINQYEPGQGIPAHIDTHS 219 (345)
T ss_dssp HHHHHHH-TSCSSCCSEEEEEEECTTCCEEEECCCTT
T ss_pred HHHHHhc-ccCCCCCCEEEEEEecCCCCEeeccCCch
Confidence 7777642 33223345677888999999999999853
No 8
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=94.74 E-value=0.34 Score=39.18 Aligned_cols=97 Identities=15% Similarity=0.104 Sum_probs=61.9
Q ss_pred EEeecCCCEEEEcCCCCHHHHHHHHHHhc--CCC---ccceeeeCCCCCccccceeccceeeecCC--------------
Q 028907 78 EVISWEPRAFVYHNFLSKEECEYLINLAT--PHM---RKSTVVDSDTGKSKDSRVRTSSGTFLARG-------------- 138 (202)
Q Consensus 78 E~LS~~P~I~l~~nfLs~~Ec~~Li~~a~--~~L---~~s~v~~~~~g~~~~s~~RtS~~~wL~~~-------------- 138 (202)
+.|-.+-..+.|.+||+++|+++|.+.-. ..+ +...+.- -|+..... |. .+|..+.
T Consensus 4 ~~~~~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~--~gk~~~~p-R~--~~wyg~~~~~Y~Ysg~~~~~~ 78 (204)
T 3s57_A 4 RHIRAEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQV--FGKWHSVP-RK--QATYGDAGLTYTFSGLTLSPK 78 (204)
T ss_dssp EEEEETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEE--TTEEEECS-SE--EEEEECTTCCEEETTEEECCE
T ss_pred ceeeeCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEE--CCeEeccC-cE--EEEECCCCCCcccCCCcccCC
Confidence 34455666788999999999999977542 234 3222221 12222221 11 2333321
Q ss_pred -CcHHHHHHHHHHHhhhCCCCCCCccceeeecCCCc-cccccccCC
Q 028907 139 -RDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQ-KYEPHFDYF 182 (202)
Q Consensus 139 -~d~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~Gg-~Y~~H~D~f 182 (202)
-.+.+..|.+++++.+|.+. +..-+..|.+|+ .-.+|.|.-
T Consensus 79 pwp~~L~~l~~~~~~~~g~~~---n~~LvN~Y~~G~d~i~~H~D~~ 121 (204)
T 3s57_A 79 PWIPVLERIRDHVSGVTGQTF---NFVLINRYKDGSDHICEHRDDE 121 (204)
T ss_dssp ECCHHHHHHHHHHHHHHCCCC---SEEEEEEESSTTCCEEEECCCC
T ss_pred CCCHHHHHHHHHHHHHhCCCC---ceeEEEEECCCCCcccceecCh
Confidence 14788899999998888654 345677899999 899999974
No 9
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=83.21 E-value=4.4 Score=32.82 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccC
Q 028907 141 KIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDY 181 (202)
Q Consensus 141 ~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~ 181 (202)
+.+..+.+|+...+|++.-..+..-+..|.+|+.-.+|.|.
T Consensus 84 ~~L~~l~~~~~~~~g~~~~~pn~~LvN~Y~~G~~i~~H~D~ 124 (211)
T 3i3q_A 84 QSFHNLCQRAATAAGYPDFQPDACLINRYAPGAKLSLHQDK 124 (211)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCCEEEEEEECTTCCEEEECCC
T ss_pred HHHHHHHHHHHHhcCCCCcCCCEEEEEEEcCCCCcccccCC
Confidence 46788888888888874333356777779999999999995
No 10
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=74.62 E-value=9 Score=31.83 Aligned_cols=22 Identities=14% Similarity=-0.117 Sum_probs=18.4
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028907 86 AFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
.+++.|+++++||+.+.+....
T Consensus 23 yvvl~~~l~~e~v~~l~~~~~~ 44 (313)
T 2fct_A 23 FIGPFDAYSPEEMKETWKRTRL 44 (313)
T ss_dssp EEEEEESSCHHHHHHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999876643
No 11
>3emr_A ECTD; double stranded beta helix, oxidoreductase; HET: MSE; 1.85A {Virgibacillus salexigens}
Probab=70.99 E-value=1.2 Score=37.91 Aligned_cols=29 Identities=14% Similarity=0.107 Sum_probs=22.3
Q ss_pred EEeecCCCEEEEcCCCCHHHHHHHHHHhcC
Q 028907 78 EVISWEPRAFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 78 E~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
+.+..+- .+++.|+|+++||+.|.+....
T Consensus 41 ~~f~~dG-yvvi~~~ls~eev~~lr~~i~~ 69 (310)
T 3emr_A 41 DSYEKNG-FLQIKNFFSEDEVIDMQKAIFE 69 (310)
T ss_dssp HHHHHHS-EEEETTCSCHHHHHHHHHHHHH
T ss_pred HHHHhCC-EEEccCCCCHHHHHHHHHHHHH
Confidence 3344455 4789999999999999988754
No 12
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=65.92 E-value=6.1 Score=32.35 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=22.1
Q ss_pred EEeecCCCEEEEcCCCCHHHHHHHHHHhcC
Q 028907 78 EVISWEPRAFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 78 E~LS~~P~I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
+.+..+-+ +++.|||+++||+.|.+....
T Consensus 26 ~~f~~dGy-vvl~~~l~~e~v~~l~~~~~~ 54 (288)
T 2rdq_A 26 SFYEEHGY-LFLRNVLDRDLVKTVAEQMRE 54 (288)
T ss_dssp HHHHHHSE-EEECSCSCHHHHHHHHHHHHH
T ss_pred HHHHhCCE-EEEeCCCCHHHHHHHHHHHHH
Confidence 33444454 778999999999999888764
No 13
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=64.57 E-value=9.2 Score=30.75 Aligned_cols=19 Identities=11% Similarity=0.058 Sum_probs=16.1
Q ss_pred cceeeecCCCccccccccC
Q 028907 163 GLQVLHYEAGQKYEPHFDY 181 (202)
Q Consensus 163 ~lQv~rY~~Gg~Y~~H~D~ 181 (202)
..-+..|.+|++|.+|.|.
T Consensus 104 ~~W~~~~~~G~~~~~H~H~ 122 (216)
T 2rg4_A 104 DIWINILPEGGVHGSHIHP 122 (216)
T ss_dssp EEEEEEECTTCCEEEECCT
T ss_pred eEEEEEcCCCCcccCccCC
Confidence 4567899999999999873
No 14
>1o51_A Hypothetical protein TM0021; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: ADP; 2.50A {Thermotoga maritima} SCOP: d.58.5.4
Probab=46.88 E-value=18 Score=26.44 Aligned_cols=74 Identities=22% Similarity=0.176 Sum_probs=37.5
Q ss_pred HHHHHHHHhcC-CCccceeeeCCCCCccccceeccceeeecCC---------CcHHHHHHHHHHHhhhCCCCCCCcccee
Q 028907 97 ECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARG---------RDKIIRDIEKRIADFTFFPLENGEGLQV 166 (202)
Q Consensus 97 Ec~~Li~~a~~-~L~~s~v~~~~~g~~~~s~~RtS~~~wL~~~---------~d~vv~~I~~Ri~~ltgl~~~~~E~lQv 166 (202)
-.+.|++.++. ++..++|..+-.|-......++++...+..+ ..+-++++-.++.++..-..=..|+.+|
T Consensus 31 L~~~Iv~~~~~~GiaGaTV~rgi~GfG~~g~ih~~~~l~ls~dlPV~Ie~Vd~~eki~~~l~~l~~~v~~Glvt~e~V~V 110 (114)
T 1o51_A 31 LFEYLVKRAYELGMKGVTVYRGIMGFGHKRHMHRSDFFSLSPDLPIVLEIVDEEERINLFLKEIDNIDFDGLVFTADVNV 110 (114)
T ss_dssp HHHHHHHHHHHTTCSCCEEEECSCCCCC-------------CCCEEEEEEEECHHHHHHHHHHHHTCCCCSEEEEEEEEC
T ss_pred HHHHHHHHHHHCCCCeEEEEcCcEEECCCCCEEccceeecCCCCCEEEEEEcCHHHHHHHHHHHHHHhCCCEEEEEEEEE
Confidence 34566666643 5677888766555444444555443333322 1356777777787776643445678888
Q ss_pred eecC
Q 028907 167 LHYE 170 (202)
Q Consensus 167 ~rY~ 170 (202)
++|+
T Consensus 111 ~r~~ 114 (114)
T 1o51_A 111 VKMG 114 (114)
T ss_dssp CC--
T ss_pred EecC
Confidence 8884
No 15
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=26.82 E-value=43 Score=22.98 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028907 86 AFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
-++|.||.|.+|-+.+.+.|+.
T Consensus 23 g~Ly~~F~s~~efe~~~~yA~e 44 (80)
T 3dgp_A 23 GSLYSDFETSQEYNLLSKYAQD 44 (80)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 4799999999999999999974
No 16
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=23.22 E-value=54 Score=26.57 Aligned_cols=22 Identities=32% Similarity=0.430 Sum_probs=19.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028907 86 AFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
.+++.|||+++||+.+.+....
T Consensus 17 yvvl~~~l~~e~v~~l~~~~~~ 38 (291)
T 2opw_A 17 FLVLEGFLSAEECVAMQQRIGE 38 (291)
T ss_dssp EEEETTSSCHHHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHH
Confidence 4789999999999999888754
No 17
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=22.82 E-value=18 Score=31.49 Aligned_cols=92 Identities=8% Similarity=-0.032 Sum_probs=46.9
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCCccceeeeCCCCC---ccccceeccceeeecCCC---cHHHHHHHHHHHhhhCCCCCC
Q 028907 87 FVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGK---SKDSRVRTSSGTFLARGR---DKIIRDIEKRIADFTFFPLEN 160 (202)
Q Consensus 87 ~l~~nfLs~~Ec~~Li~~a~~~L~~s~v~~~~~g~---~~~s~~RtS~~~wL~~~~---d~vv~~I~~Ri~~ltgl~~~~ 160 (202)
.++.|++|++|++.|++..+...+.+.+.... .. ......|+.-..+=.=.. +.+..++..-+..++|-+.-.
T Consensus 43 Lvlk~vFs~eEv~~l~~el~~~~~d~~~~k~~-~~i~~~~s~~lrs~~H~~~~f~~h~~s~l~~rll~vl~~LlG~el~i 121 (344)
T 3nnf_A 43 CQIKKIFDFSAIKTIQKTLDQAKQESQISKEK-VTLKLGGIDDIDTNDHAYDLVKYDFVSSFIQEKLALLNYITGKNLMI 121 (344)
T ss_dssp EEETTCSCHHHHHHHHHHHHHHHHHCCCCSHH-HHHHTTSCCCCBCSEEEECSSCHHHHHHHHGGGHHHHHHHHTSCEEE
T ss_pred EEEcCCCCHHHHHHHHHHHHHHhhchhhhccc-ceecCCCccchhcccccchhHHHHHHHHHHHHHHHHHHHHhCCceee
Confidence 67899999999999998876422222221100 00 012344533221100000 123333334444566655422
Q ss_pred CccceeeecCCC-cccccccc
Q 028907 161 GEGLQVLHYEAG-QKYEPHFD 180 (202)
Q Consensus 161 ~E~lQv~rY~~G-g~Y~~H~D 180 (202)
. .-+..++.+| --|.||.|
T Consensus 122 ~-qs~~fe~kPG~KGFpWH~D 141 (344)
T 3nnf_A 122 M-HNALFSVEPNHKGLPWHVG 141 (344)
T ss_dssp E-EEEEEEECBTCCBSCSBCT
T ss_pred e-ecceEeeCCCCCCCCceec
Confidence 2 2455667775 56899999
No 18
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=20.68 E-value=98 Score=24.99 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=29.6
Q ss_pred cCCCcHHHHHHHHHHHhhhCCCCCCCccceeeecCCCccccccccCCC
Q 028907 136 ARGRDKIIRDIEKRIADFTFFPLENGEGLQVLHYEAGQKYEPHFDYFM 183 (202)
Q Consensus 136 ~~~~d~vv~~I~~Ri~~ltgl~~~~~E~lQv~rY~~Gg~Y~~H~D~f~ 183 (202)
+.++++ .+.+.+.+.+-+|.+.+....++|-.| .|+.|.+|+|...
T Consensus 93 e~gE~~-~eaL~REL~EELg~~~~~~~~~eIge~-lg~wwRp~fet~~ 138 (208)
T 3bho_A 93 NPGEDE-VEGLKRLMTEILGRQDGVLQDWVIDDC-IGNWWRPNFEPPQ 138 (208)
T ss_dssp CTTCCH-HHHHHHHHHHHHCCCC-----CEEEEE-EEEEEECSSSSCC
T ss_pred CCCCCH-HHHHHHHHHHHhCCCcCCCccEEEhhe-EEEEecCCCCCcC
Confidence 445565 678888888888874333345666544 5789999999853
No 19
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=20.59 E-value=65 Score=23.42 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=20.1
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC
Q 028907 86 AFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 86 I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
-++|.+|.|.+|-+.+.+.|+.
T Consensus 51 G~LY~dF~s~~efe~v~~yA~e 72 (108)
T 3dom_A 51 GSLYSDFETSQEYNLLSKYAQD 72 (108)
T ss_dssp EEEEECCSCHHHHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHH
Confidence 5799999999999999999974
No 20
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=20.52 E-value=65 Score=26.41 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=21.1
Q ss_pred eecCCCEEEEcCCCCHHHHHHHHHHhcC
Q 028907 80 ISWEPRAFVYHNFLSKEECEYLINLATP 107 (202)
Q Consensus 80 LS~~P~I~l~~nfLs~~Ec~~Li~~a~~ 107 (202)
+..+- .+++.|||+++||+.+.+....
T Consensus 31 f~~dG-yvvl~~~l~~e~v~~l~~~~~~ 57 (308)
T 2a1x_A 31 YEENG-FLVIKNLVPDADIQRFRNEFEK 57 (308)
T ss_dssp HHHHS-EEEETTCSCHHHHHHHHHHHHH
T ss_pred HHhCC-EEEccCCCCHHHHHHHHHHHHH
Confidence 33344 4788999999999999887653
Done!