Query 028908
Match_columns 202
No_of_seqs 185 out of 1245
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 06:43:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028908.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028908hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ltm_A NFU1 iron-sulfur cluste 100.0 3.5E-37 1.2E-41 230.9 0.0 95 1-95 11-106 (107)
2 2ltl_A NIFU-like protein, mito 100.0 2.1E-35 7.1E-40 224.9 0.0 94 1-94 17-117 (119)
3 2k1h_A Uncharacterized protein 100.0 1.7E-33 5.9E-38 206.6 9.6 86 2-88 3-88 (94)
4 1pqx_A Conserved hypothetical 100.0 1.1E-32 3.6E-37 201.3 7.3 82 2-84 3-84 (91)
5 1veh_A NIFU-like protein hirip 100.0 4.6E-30 1.6E-34 187.8 8.2 86 104-191 5-90 (92)
6 1xhj_A Nitrogen fixation prote 100.0 6.3E-29 2.2E-33 180.3 8.1 78 110-190 5-82 (88)
7 2z51_A NIFU-like protein 2, ch 99.9 7.3E-25 2.5E-29 174.2 3.6 78 114-194 6-83 (154)
8 1th5_A NIFU1; iron-sulfur clus 99.9 1.7E-23 5.7E-28 147.2 4.7 68 113-187 5-73 (74)
9 2z51_A NIFU-like protein 2, ch 99.8 4.7E-19 1.6E-23 140.7 9.5 122 51-187 27-154 (154)
10 3cq1_A Putative uncharacterize 97.8 0.0001 3.5E-09 53.8 8.7 73 113-189 7-82 (103)
11 3lno_A Putative uncharacterize 97.2 0.0017 5.6E-08 47.8 8.0 78 111-190 7-87 (108)
12 1uwd_A Hypothetical protein TM 96.9 0.0033 1.1E-07 45.6 7.7 73 114-189 8-83 (103)
13 3ux2_A MIP18 family protein FA 85.9 1.2 4E-05 33.8 5.0 45 141-186 45-89 (130)
14 1xg8_A Hypothetical protein SA 67.5 4 0.00014 29.8 2.9 25 156-181 22-46 (111)
15 4hde_A SCO1/SENC family lipopr 60.6 4.1 0.00014 30.9 2.1 56 131-189 20-77 (170)
16 3fry_A Probable copper-exporti 51.6 14 0.00049 23.3 3.4 32 147-187 6-38 (73)
17 4ecd_A Chorismate synthase; 4- 45.0 8.8 0.0003 34.1 1.9 32 37-68 247-278 (398)
18 1um0_A Chorismate synthase; be 41.2 10 0.00035 33.3 1.7 28 38-65 230-257 (365)
19 1sq1_A Chorismate synthase; st 40.4 11 0.00037 33.3 1.7 29 38-66 227-255 (370)
20 1qxo_A Chorismate synthase; be 39.2 11 0.00039 33.3 1.7 30 37-66 239-268 (388)
21 1q1l_A Chorismate synthase; be 38.2 12 0.00041 33.3 1.7 34 29-65 247-280 (401)
22 1q8l_A Copper-transporting ATP 38.0 52 0.0018 20.9 4.6 32 147-186 10-42 (84)
23 3bej_E Nuclear receptor coacti 37.0 15 0.00051 19.7 1.3 10 159-168 1-10 (26)
24 2o11_A Chorismate synthase; sh 35.6 11 0.00039 33.5 1.1 28 38-65 245-272 (407)
25 2k02_A Ferrous iron transport 35.1 16 0.00055 25.4 1.6 10 153-162 58-67 (87)
26 1r53_A Chorismate synthase; tw 34.3 11 0.00036 33.5 0.6 29 38-66 239-267 (382)
27 1xn7_A Hypothetical protein YH 33.1 14 0.00048 25.0 1.0 10 153-162 58-67 (78)
28 1xvq_A Thiol peroxidase; thior 30.4 33 0.0011 25.5 2.8 53 132-192 33-87 (175)
29 1kvi_A Copper-transporting ATP 27.8 1.1E+02 0.0037 18.7 4.9 31 147-185 9-40 (79)
30 1mwy_A ZNTA; open-faced beta-s 27.5 74 0.0025 19.2 3.8 31 147-185 4-35 (73)
31 1yjr_A Copper-transporting ATP 26.4 53 0.0018 19.7 2.9 32 146-185 4-36 (75)
32 1opz_A Potential copper-transp 25.7 90 0.0031 18.5 4.0 31 147-185 7-38 (76)
33 1we0_A Alkyl hydroperoxide red 25.4 75 0.0026 23.5 4.1 55 135-194 23-79 (187)
34 2jsy_A Probable thiol peroxida 25.1 22 0.00077 25.9 1.0 55 131-192 32-88 (167)
35 3cq1_A Putative uncharacterize 24.8 93 0.0032 21.5 4.2 48 41-88 23-70 (103)
36 2ew9_A Copper-transporting ATP 24.5 84 0.0029 22.0 4.1 31 147-185 5-36 (149)
37 2k53_A A3DK08 protein; NESG, C 24.3 18 0.00061 24.3 0.2 15 155-169 29-44 (76)
38 4fpp_A Phosphotransferase; fou 24.0 41 0.0014 26.7 2.4 27 125-152 219-245 (247)
39 3zrd_A Thiol peroxidase; oxido 23.3 50 0.0017 25.4 2.7 56 131-193 66-123 (200)
40 3na7_A HP0958; flagellar bioge 23.1 27 0.00094 28.5 1.2 16 146-162 192-207 (256)
41 1xzo_A BSSCO, hypothetical pro 21.6 92 0.0032 22.3 3.9 55 132-189 22-78 (174)
42 1uwd_A Hypothetical protein TM 20.7 1.4E+02 0.0047 20.5 4.5 49 40-88 22-71 (103)
43 1id0_A PHOQ histidine kinase; 20.5 54 0.0018 23.0 2.3 29 125-153 115-143 (152)
44 1ysr_A Sensor-type histidine k 20.1 56 0.0019 23.0 2.3 28 125-152 119-146 (150)
45 2zzt_A Putative uncharacterize 20.0 2.2E+02 0.0076 19.5 6.2 22 165-186 59-80 (107)
No 1
>2ltm_A NFU1 iron-sulfur cluster scaffold homolog, mitoch; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=230.90 Aligned_cols=95 Identities=59% Similarity=1.066 Sum_probs=91.9
Q ss_pred CceeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEe-cCCCChhhhhHHHH
Q 028908 1 MFIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK-SEDTSWDLLKPEIF 79 (202)
Q Consensus 1 mfI~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk-~~~~~W~~l~~~I~ 79 (202)
||||||+|||||+|||+|++.+++.|+++|++.++|.+||||++||+|+||++||++.||||||| .++++|+.|+++|+
T Consensus 11 ~~~qtE~TPNPntLKF~p~~~vl~~gs~eF~~~~~a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~~dW~~ikp~V~ 90 (107)
T 2ltm_A 11 MFIQTQDTPNPNSLKFIPGKPVLETRTMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIY 90 (107)
Confidence 89999999999999999999999888999999999999999999999999999999999999999 88999999999999
Q ss_pred HHHHHHHhcCCCCccc
Q 028908 80 AAIMDFYSSGQPLFLD 95 (202)
Q Consensus 80 ~~I~d~l~sG~pvv~~ 95 (202)
++|++||.+|.|++.+
T Consensus 91 ~~I~~~~~sG~pvv~~ 106 (107)
T 2ltm_A 91 ATIMDFFASGLPLVTE 106 (107)
Confidence 9999999999998753
No 2
>2ltl_A NIFU-like protein, mitochondrial; structural genomics, northeast structural consortium, NESG, PSI-biology; NMR {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=224.92 Aligned_cols=94 Identities=26% Similarity=0.521 Sum_probs=90.6
Q ss_pred CceeccCCCCCCceeee-cCcccCCC--c-ceecCChhhhc--CcHHHHhcc-CCCCeeEEEEeCCeEEEEecCCCChhh
Q 028908 1 MFIQTQPTPNPSSLMFY-PGKPVMEV--G-SADFPNARAAM--NSPLAKSLY-GVDGITRVFFGSDFITVTKSEDTSWDL 73 (202)
Q Consensus 1 mfI~~e~TPNP~~lKF~-~~~~~~~~--~-~~~f~~~~~a~--~spLa~~Lf-~i~gV~~Vf~~~dfItVtk~~~~~W~~ 73 (202)
||||||+|||||+|||+ |++++++. | +++|++.++|. +||||++|| +|+||++||++.|||||||+++++|+.
T Consensus 17 mfIqtE~TPNPntLKF~sp~~~vl~~~~g~t~~f~~~~~a~~~~SPLA~~LF~~i~GV~~Vf~g~DFITVtK~~~~dW~~ 96 (119)
T 2ltl_A 17 IHIKTLTTPNENALKFLSTDGEMLQTRGSKSIVIKNTDENLINHSKLAQQIFLQCPGVESLMIGDDFLTINKDRMVHWNS 96 (119)
Confidence 89999999999999999 99999876 5 89999999998 899999999 999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhcCCCCcc
Q 028908 74 LKPEIFAAIMDFYSSGQPLFL 94 (202)
Q Consensus 74 l~~~I~~~I~d~l~sG~pvv~ 94 (202)
|+|+|+++|++||.+|.|++.
T Consensus 97 ikp~I~~~I~e~~~sg~pvv~ 117 (119)
T 2ltl_A 97 IKPEIIDLLTKQLAYGEDVIS 117 (119)
Confidence 999999999999999999875
No 3
>2k1h_A Uncharacterized protein Ser13; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Staphylococcus epidermidis}
Probab=100.00 E-value=1.7e-33 Score=206.63 Aligned_cols=86 Identities=20% Similarity=0.437 Sum_probs=81.4
Q ss_pred ceeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEecCCCChhhhhHHHHHH
Q 028908 2 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA 81 (202)
Q Consensus 2 fI~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~~~~~W~~l~~~I~~~ 81 (202)
|||||+|||||+|||+||+.+.++++.+|++.+ |.+||||++||+|+||++||+++|||||||.++++|+.|+++|+++
T Consensus 3 ~Iqte~TPNPntlKF~~~~~l~~g~s~~f~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~I~~~ 81 (94)
T 2k1h_A 3 IIAISETPNHNTMKVSLSEPRQDNSFTTYTAAQ-EGQPEFINRLFEIEGVKSIFYVLDFISIDKEDNANWNELLPQIENT 81 (94)
T ss_dssp CCCCBCCSSSSCEEEECCCCCTTCCCCEECCCC-TTSCHHHHHHHTSTTEEEEEEETTEEEEEECTTCCHHHHHHHHHHH
T ss_pred eEEeecCCChhcEEEeCCCCcCCCCceecCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence 799999999999999999998777799999999 8899999999999999999999999999999999999999999999
Q ss_pred HHHHHhc
Q 028908 82 IMDFYSS 88 (202)
Q Consensus 82 I~d~l~s 88 (202)
|++|+..
T Consensus 82 I~~~~~~ 88 (94)
T 2k1h_A 82 FAKSNLE 88 (94)
T ss_dssp HHHHC--
T ss_pred HHHHHHh
Confidence 9999854
No 4
>1pqx_A Conserved hypothetical protein; ZR18,structure, autostructure,spins,autoassign, northeast structural genomics consortium; NMR {Staphylococcus aureus subsp} SCOP: d.267.1.1 PDB: 2ffm_A
Probab=99.97 E-value=1.1e-32 Score=201.35 Aligned_cols=82 Identities=21% Similarity=0.407 Sum_probs=78.7
Q ss_pred ceeccCCCCCCceeeecCcccCCCcceecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEecCCCChhhhhHHHHHH
Q 028908 2 FIQTQPTPNPSSLMFYPGKPVMEVGSADFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAA 81 (202)
Q Consensus 2 fI~~e~TPNP~~lKF~~~~~~~~~~~~~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~~~~~W~~l~~~I~~~ 81 (202)
|||+|+|||||+|||+|++.+.++++.+|++.+ |.+||||++||+|+||++||++.|||||||.++++|+.|+++|+++
T Consensus 3 ~Iqte~TPNPn~lKF~~~~~l~~g~s~~F~~~~-a~~SPLA~~LF~i~gVk~Vf~g~dFITVtK~~~~dW~~ikp~V~~~ 81 (91)
T 1pqx_A 3 IISISETPNHNTMKITLSESREGMTSDTYTKVD-DSQPAFINDILKVEGVKSIFHVMDFISVDKENDANWETVLPKVEAV 81 (91)
T ss_dssp CCBCCCCSCSSEEEEECSCCSSCCCCEEESSSC-SSCCHHHHHHHHSTTEEEEEEETTEEEEEECTTSCSTTTHHHHHHH
T ss_pred eEEeecCCChhcEEEeCCcCcCCCCceEeCCcc-ccCCHHHHHhhCCCCeeEEEEeCCEEEEecCCCCCHHHHHHHHHHH
Confidence 799999999999999999998777799999999 9899999999999999999999999999999999999999999998
Q ss_pred HHH
Q 028908 82 IMD 84 (202)
Q Consensus 82 I~d 84 (202)
|++
T Consensus 82 I~~ 84 (91)
T 1pqx_A 82 FEL 84 (91)
T ss_dssp TCS
T ss_pred HHH
Confidence 865
No 5
>1veh_A NIFU-like protein hirip5; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.52.8.1
Probab=99.96 E-value=4.6e-30 Score=187.80 Aligned_cols=86 Identities=60% Similarity=1.042 Sum_probs=80.8
Q ss_pred ccCCCCchHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcce
Q 028908 104 TAINEDDSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKS 183 (202)
Q Consensus 104 ~~~~~~~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~ 183 (202)
..+.++++++.++|+++|+++|||+|++|||||+|++|+ +|+|+|||+|||+|||||++||+++||++|++++|+|+.
T Consensus 5 ~~~~~~d~~~~~~I~~~L~~~IRP~L~~dGGdvelv~v~--~g~V~v~l~GaC~gC~ss~~Tlk~gIE~~L~~~vpev~~ 82 (92)
T 1veh_A 5 SSGSEEDDEVVAMIKELLDTRIRPTVQEDGGDVIYRGFE--DGIVRLKLQGSCTSCPSSIITLKSGIQNMLQFYIPEVEG 82 (92)
T ss_dssp CSSCSSCCHHHHHHHHHHHHTTHHHHHHHSCCCCEEEEE--TTEEEECCCCCCCCCHHHHHHTHHHHHHHHHHHCSSCCC
T ss_pred cccCCCchHHHHHHHHHHHHHhhHHHHhcCCeEEEEEEe--CCEEEEEEeecCCCCCCcHHHHHHHHHHHHHHHCCCCCE
Confidence 345567889999999999999999999999999999998 799999999999999999999999999999999999999
Q ss_pred EEecCCcc
Q 028908 184 VEQELDAE 191 (202)
Q Consensus 184 V~~~~~~~ 191 (202)
|+++++++
T Consensus 83 V~~v~~~~ 90 (92)
T 1veh_A 83 VEQVSGPS 90 (92)
T ss_dssp EEECSCSC
T ss_pred EEEcCCCC
Confidence 99998765
No 6
>1xhj_A Nitrogen fixation protein NIFU; alpha-beta, NIFU-like, structural genomics, protein structur initiative, NESG, PSI; NMR {Staphylococcus epidermidis} SCOP: d.52.8.1
Probab=99.95 E-value=6.3e-29 Score=180.30 Aligned_cols=78 Identities=41% Similarity=0.695 Sum_probs=73.9
Q ss_pred chHHHHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908 110 DSETVAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 189 (202)
Q Consensus 110 ~~~~~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~ 189 (202)
+.++.++|+++|++ |||+|++|||||+|++|+ +|+|+|||+|||+|||||++||+++||++|++++|+|+.|++.++
T Consensus 5 ~~~~~~~I~~~L~~-IRP~L~~dGGdvelv~v~--~g~V~V~L~GaC~gCpss~~TLk~gIE~~L~~~vPev~~V~~v~~ 81 (88)
T 1xhj_A 5 NPTMFDQVAEVIER-LRPFLLRDGGDCTLVDVE--DGIVKLQLHGACGTCPSSTITLKAGIERALHEEVPGVIEVEQVFL 81 (88)
T ss_dssp CSCHHHHHHHHHHH-HHHHHHHHSCEEEEEECC--SSEEEEEEESSCCSSCHHHHHHHHHHHHHHHHHSTTCCEEEEEEC
T ss_pred hHHHHHHHHHHHHH-hcHHHHhcCCeEEEEEEE--CCEEEEEEeecCCCCcchHHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 45689999999996 999999999999999997 799999999999999999999999999999999999999999887
Q ss_pred c
Q 028908 190 A 190 (202)
Q Consensus 190 ~ 190 (202)
+
T Consensus 82 ~ 82 (88)
T 1xhj_A 82 E 82 (88)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.90 E-value=7.3e-25 Score=174.18 Aligned_cols=78 Identities=38% Similarity=0.731 Sum_probs=73.2
Q ss_pred HHHHHHHHHhccchhhhhcCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCcchH
Q 028908 114 VAMIKELLETRIRPAVQDDGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE 193 (202)
Q Consensus 114 ~~~i~~~l~~~IrP~l~~dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~~ 193 (202)
.++|+++|+ +|||+|++|||||+|+++| +|+|+|||+|+|+|||||++||+++||++|++++|+++.|++..++++.
T Consensus 6 ~e~v~~~L~-~iRP~l~~dGGdvelv~v~--~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpev~~V~~v~~~~e~ 82 (154)
T 2z51_A 6 EENVESVLD-EIRPYLMSDGGNVALHEID--GNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPEIVAVEALPDEETG 82 (154)
T ss_dssp HHHHHHHHH-HHHHHHHHTTEEEEEEEEE--TTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTTCCEEEECCSSCCS
T ss_pred HHHHHHHHH-HhChHHHhcCCeEEEEEEE--CCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCCceEEEEccCchhh
Confidence 578999998 6999999999999999998 7899999999999999999999999999999999999999999887764
Q ss_pred H
Q 028908 194 V 194 (202)
Q Consensus 194 ~ 194 (202)
+
T Consensus 83 l 83 (154)
T 2z51_A 83 L 83 (154)
T ss_dssp C
T ss_pred h
Confidence 3
No 8
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=99.88 E-value=1.7e-23 Score=147.21 Aligned_cols=68 Identities=21% Similarity=0.404 Sum_probs=64.3
Q ss_pred HHHHHHHHHHhccchhhhhcC-CCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908 113 TVAMIKELLETRIRPAVQDDG-GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 187 (202)
Q Consensus 113 ~~~~i~~~l~~~IrP~l~~dG-Gdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~ 187 (202)
+.++|+++|++ |||+|++|| ||++|++++ +|+|+|||+|||+|| +||+++||++|++++|+|+.|+++
T Consensus 5 ~~~~V~~~L~~-iRP~L~~dGGGdvelv~v~--~g~V~v~l~GaC~gc----~Tlk~gIe~~L~~~vpei~~V~~v 73 (74)
T 1th5_A 5 NEENVEKVLNE-IRPYLAGTGGGGLQFLMIK--GPIVKVRLTGPAAVV----RTVRIAVSKKLREKIPSIQIVQLL 73 (74)
T ss_dssp SHHHHHHHHTT-THHHHTTTTCCCCCCCEEE--TTEEEECCCSSSSSS----SSHHHHHHHHHHHHCTTCSEEEEC
T ss_pred HHHHHHHHHHH-HhHHHHhcCCCcEEEEEEe--CCEEEEEEecCCcch----HHHHHHHHHHHHHHCCCCcEEEeC
Confidence 47899999996 999999999 999999998 799999999999999 699999999999999999999875
No 9
>2z51_A NIFU-like protein 2, chloroplast; CNFU, iron-sulfur cluster biosynthesis, metal transport; 1.35A {Arabidopsis thaliana} PDB: 2jnv_A
Probab=99.78 E-value=4.7e-19 Score=140.69 Aligned_cols=122 Identities=19% Similarity=0.290 Sum_probs=91.9
Q ss_pred eeEEEEeCCeEEEEecCC-----CChhhhhHHHHHHHHHHHhcCCCCccchhhhhhhcccCCCCchHHHHHHHHHHHhcc
Q 028908 51 ITRVFFGSDFITVTKSED-----TSWDLLKPEIFAAIMDFYSSGQPLFLDSETAAAKDTAINEDDSETVAMIKELLETRI 125 (202)
Q Consensus 51 V~~Vf~~~dfItVtk~~~-----~~W~~l~~~I~~~I~d~l~sG~pvv~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~I 125 (202)
|.=|-+.++.+.|...+. .+=..++..|...|++++.. +..... ..+. ........++|+++|+ .|
T Consensus 27 velv~v~~~~V~v~l~GaC~gC~ss~~Tlk~~Ie~~L~~~vpe----v~~V~~--v~~~--~e~l~L~~~~v~~~L~-~i 97 (154)
T 2z51_A 27 VALHEIDGNVVRVKLQGACGSCPSSTMTMKMGIERRLMEKIPE----IVAVEA--LPDE--ETGLELNEENIEKVLE-EI 97 (154)
T ss_dssp EEEEEEETTEEEEEEEHHHHTCHHHHHHHHHHHHHHHHHHCTT----CCEEEE--CCSS--CCSCCSSHHHHHHHHH-HH
T ss_pred EEEEEEECCEEEEEEECCCCCCCccHhHHHHHHHHHHHHhCCC----ceEEEE--ccCc--hhhhHHHHHHHHHHHH-HH
Confidence 776777778888876542 23346788888888888732 211110 0001 1112234689999999 59
Q ss_pred chhhhh-cCCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908 126 RPAVQD-DGGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 187 (202)
Q Consensus 126 rP~l~~-dGGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~ 187 (202)
||+|++ ||||++|+++| +|+|+|||+|+|+|| +|++++||++|++++|+|++|++.
T Consensus 98 RP~L~~~dGGdvelv~v~--~~~v~v~l~Gac~~~----~Tlk~~Ie~~l~e~vP~i~~V~~~ 154 (154)
T 2z51_A 98 RPYLIGTADGSLDLVEIE--DPIVKIRITGPAAGV----MTVRVAVTQKLREKIPSIAAVQLI 154 (154)
T ss_dssp GGGCCGGGCCEEEEEEEE--TTEEEEEEESGGGGC----HHHHHHHHHHHHHHCTTCCEEEEC
T ss_pred HHHhhhcCCCCeEEEEEE--CCEEEEEEecCCccc----HhHHHHHHHHHHHHCCCccEEEeC
Confidence 999998 99999999998 799999999999998 699999999999999999999863
No 10
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=97.82 E-value=0.0001 Score=53.79 Aligned_cols=73 Identities=27% Similarity=0.312 Sum_probs=61.7
Q ss_pred HHHHHHHHHHhccchhhhhcC---CCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908 113 TVAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 189 (202)
Q Consensus 113 ~~~~i~~~l~~~IrP~l~~dG---Gdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~ 189 (202)
..++|.++|.+-+.|.+..+- |-|.-+.++ +|.|+|.|...+.+||... +++..|+.+|+ .+|+|.+|.....
T Consensus 7 ~~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~--~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~-~l~gv~~V~V~l~ 82 (103)
T 3cq1_A 7 LEAQAWALLEAVYDPELGLDVVNLGLIYDLVVE--PPRAYVRMTLTTPGCPLHD-SLGEAVRQALS-RLPGVEEVEVEVT 82 (103)
T ss_dssp HHHHHHHHHTTCBCTTTCSBTTTTTCEEEEEEE--TTEEEEEECCSSSSCCSSC-HHHHHHHHHHH-TSTTCCEEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCCcCchhcCceEEEEEE--CCEEEEEEEECCCCCcHHH-HHHHHHHHHHH-hCCCceeEEEEEe
Confidence 567899999988999998887 778877777 6799999999999999855 78899999997 5899988876443
No 11
>3lno_A Putative uncharacterized protein; alpha-beta fold, structural genomics, center for structural genomics of infectious diseases, csgid; 2.10A {Bacillus anthracis} SCOP: d.52.8.0
Probab=97.17 E-value=0.0017 Score=47.77 Aligned_cols=78 Identities=23% Similarity=0.284 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHhccchhhhhc---CCCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908 111 SETVAMIKELLETRIRPAVQDD---GGDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 187 (202)
Q Consensus 111 ~~~~~~i~~~l~~~IrP~l~~d---GGdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~ 187 (202)
....++|.++|.+-+-|.+..+ -|-|.=+.++. +|.|+|.|.-.+.+||... .++..|+.+|+..+|++.+|...
T Consensus 7 ~~~~~~V~~aL~~V~DPe~~~~Iv~lG~V~~I~v~~-~~~V~V~ltlt~p~cp~~~-~i~~~i~~al~~~l~Gv~~V~V~ 84 (108)
T 3lno_A 7 EAFENKLYANLEAVIDPELGVDIVNLGLVYDVTADE-NNNAVITMTMTSIGCPMAG-QIVSDVKKVLSTNVPEVNEIEVN 84 (108)
T ss_dssp HHHHHHHHHHGGGCEETTTTEEHHHHTCEEEEEECT-TCCEEEEECCSCTTCTTHH-HHHHHHHHHHHHHCTTCCCEEEE
T ss_pred hhhHHHHHHHHcCCCCCCCCCCHHHcCCceEEEECC-CCeEEEEEEECCCCCcHHH-HHHHHHHHHHHHhCCCCceEEEE
Confidence 3467889999998889988654 46677776662 4889999999999999876 78999999997779999988765
Q ss_pred CCc
Q 028908 188 LDA 190 (202)
Q Consensus 188 ~~~ 190 (202)
...
T Consensus 85 l~~ 87 (108)
T 3lno_A 85 VVW 87 (108)
T ss_dssp ECC
T ss_pred EEe
Confidence 443
No 12
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=96.94 E-value=0.0033 Score=45.56 Aligned_cols=73 Identities=23% Similarity=0.232 Sum_probs=57.1
Q ss_pred HHHHHHHHHhccchhhhhcC---CCEEEEEEecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908 114 VAMIKELLETRIRPAVQDDG---GDIEYRGFDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 189 (202)
Q Consensus 114 ~~~i~~~l~~~IrP~l~~dG---Gdiel~~~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~ 189 (202)
.++|.++|.+-+-|.+..+- |-|.=+.++. +|.|+|.|.-.+.+||... .++..|+++|++ +|+|.+|.....
T Consensus 8 ~~~V~~aL~~V~DPel~~~iv~lG~V~~v~v~~-~~~V~v~l~lt~~~cp~~~-~l~~~i~~al~~-l~gv~~v~V~l~ 83 (103)
T 1uwd_A 8 KEDVLNALKNVIDFELGLDVVSLGLVYDIQIDD-QNNVKVLMTMTTPMCPLAG-MILSDAEEAIKK-IEGVNNVEVELT 83 (103)
T ss_dssp HHHHHHHHTTCBCTTTSSBTTTTTCCCCEEECT-TCEEEEEECCSSSCCSSHH-HHHHHHHHHHHT-SSSCCEEEEEEC
T ss_pred HHHHHHHHcCCCCCCCCcChhhcCCeeEEEEcC-CCEEEEEEEECCCCCcHHH-HHHHHHHHHHHh-CCCcceEEEEEe
Confidence 46788889877779887765 5566555652 3799999999999999854 789999999974 899988876443
No 13
>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A
Probab=85.91 E-value=1.2 Score=33.78 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=36.1
Q ss_pred EecCCCEEEEEeccCCCCCcchHHHHHHHHHHHHHhhCCCcceEEe
Q 028908 141 FDPETGTVKLRMQGACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ 186 (202)
Q Consensus 141 ~d~~~g~v~v~l~GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~ 186 (202)
++.+++.|.|.|+=.=.|||+++. +...|+.+|++.+|...+|..
T Consensus 45 ~~~~~~~V~V~~TPT~p~Cp~a~~-I~l~Ir~kL~~~lp~~~kV~v 89 (130)
T 3ux2_A 45 INEEEYLVIIRFTPTVPHCSLATL-IGLCLRVKLQRCLPFKHKLEI 89 (130)
T ss_dssp EETTEEEEEECCCCCCCSSCHHHH-HHHHHHHHHHHHCSSCCCCCC
T ss_pred ccCCCCeEEEEEEeCCCCCCchHH-HHHHHHHHHHHhCCCceEEEE
Confidence 344457899999999999999985 667899999998987665553
No 14
>1xg8_A Hypothetical protein SA0798; structural genomics, protein structure initative, MCSG, PSI, protein structure initiative; 2.10A {Staphylococcus aureus subsp} SCOP: c.47.1.17
Probab=67.47 E-value=4 Score=29.84 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=20.4
Q ss_pred CCCCcchHHHHHHHHHHHHHhhCCCc
Q 028908 156 CSGCPSSSVTLKSGIENMLMHYVPEV 181 (202)
Q Consensus 156 C~gCpss~~Tl~~~Ie~~l~~~~Pev 181 (202)
|.+-|||..|. .+++.+|++++|+.
T Consensus 22 CVnaPSSkeTy-EWLqAal~RKyp~~ 46 (111)
T 1xg8_A 22 CVNAPTSKDIY-DWLQPLLKRKYPNI 46 (111)
T ss_dssp GSSSCCHHHHH-HHHHHHHHHHCTTS
T ss_pred ccCCCCchhHH-HHHHHHHhCcCCCC
Confidence 44448888776 89999999999984
No 15
>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}
Probab=60.59 E-value=4.1 Score=30.87 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=37.7
Q ss_pred hcCCCEEEEEEecCCCEEEEEe-ccCCC-CCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908 131 DDGGDIEYRGFDPETGTVKLRM-QGACS-GCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 189 (202)
Q Consensus 131 ~dGGdiel~~~d~~~g~v~v~l-~GaC~-gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~ 189 (202)
.+|-.+.+-++. |.++.|-+ ...|. -||.....|.. +++.+++.-.+|.-|-...|
T Consensus 20 ~~G~~v~l~d~~--Gk~vll~F~~t~Cp~~Cp~~~~~l~~-l~~~~~~~~~~v~~v~isvD 77 (170)
T 4hde_A 20 QDGKPFGTKDLK--GKVWVADFMFTNCQTVCPPMTANMAK-LQKMAKEEKLDVQFVSFSVD 77 (170)
T ss_dssp TTSCEEEHHHHT--TSCEEEEEECTTCSSSHHHHHHHHHH-HHHHHHHTTCCCEEEEEESC
T ss_pred CCCCEEeHHHhC--CCEEEEEEECCCCCCcccHHHHHHHH-HHHhhhcccccceeEeeecC
Confidence 356567776664 55666666 47796 59988888854 77778776667766655444
No 16
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=51.61 E-value=14 Score=23.31 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=21.7
Q ss_pred EEEEEecc-CCCCCcchHHHHHHHHHHHHHhhCCCcceEEec
Q 028908 147 TVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQE 187 (202)
Q Consensus 147 ~v~v~l~G-aC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~ 187 (202)
.+.++..| .|.+|. ..|++.|+. |.|..+...
T Consensus 6 ~~~~~v~gm~C~~C~-------~~ie~~l~~--~gv~~~~v~ 38 (73)
T 3fry_A 6 KIVLELSGLSCHHCV-------ARVKKALEE--AGAKVEKVD 38 (73)
T ss_dssp EEEEEEESSBCGGGH-------HHHHHHHHH--TTCEEEEEC
T ss_pred EEEEEECCCCCHHHH-------HHHHHHhcc--CCcEEEEEE
Confidence 45667777 577664 357888887 888766543
No 17
>4ecd_A Chorismate synthase; 4-layer sandwich, lyase; 2.50A {Bifidobacterium longum subsp}
Probab=45.02 E-value=8.8 Score=34.14 Aligned_cols=32 Identities=19% Similarity=0.525 Sum_probs=23.7
Q ss_pred cCcHHHHhccCCCCeeEEEEeCCeEEEEecCC
Q 028908 37 MNSPLAKSLYGVDGITRVFFGSDFITVTKSED 68 (202)
Q Consensus 37 ~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~~~ 68 (202)
..+.||.+||.|+.||.|.|+..|=.......
T Consensus 247 Lda~LA~A~mSI~AvKGvEiG~GF~~a~~~GS 278 (398)
T 4ecd_A 247 LDAALASAIMGIQAFKGVEIGDGFLAASRPGS 278 (398)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTTTTC------
T ss_pred hhHHHHHHhcCcCceeeEEecchHhhhhcccc
Confidence 35689999999999999999999987776554
No 18
>1um0_A Chorismate synthase; beta-alpha-beta sandwich fold, lyase; HET: FMN; 1.95A {Helicobacter pylori} SCOP: d.258.1.1 PDB: 1umf_A
Probab=41.20 E-value=10 Score=33.31 Aligned_cols=28 Identities=18% Similarity=0.411 Sum_probs=24.0
Q ss_pred CcHHHHhccCCCCeeEEEEeCCeEEEEe
Q 028908 38 NSPLAKSLYGVDGITRVFFGSDFITVTK 65 (202)
Q Consensus 38 ~spLa~~Lf~i~gV~~Vf~~~dfItVtk 65 (202)
.+.||.+||.|+.||.|.|+..|=....
T Consensus 230 da~LA~A~msI~AvKGvEiG~GF~~a~~ 257 (365)
T 1um0_A 230 DAKIAEAMMGLNGVKAVEIGKGVESSLL 257 (365)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred hHHHHHHhcCccceeeEEeccchhhhhc
Confidence 4679999999999999999999855444
No 19
>1sq1_A Chorismate synthase; structural genomics, bifunctional alpha/beta tetrameric PROT protein structure initiative; 2.80A {Campylobacter jejuni} SCOP: d.258.1.1
Probab=40.42 E-value=11 Score=33.27 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=24.5
Q ss_pred CcHHHHhccCCCCeeEEEEeCCeEEEEec
Q 028908 38 NSPLAKSLYGVDGITRVFFGSDFITVTKS 66 (202)
Q Consensus 38 ~spLa~~Lf~i~gV~~Vf~~~dfItVtk~ 66 (202)
.+.||.+||.|+.||.|.|+..|=...+.
T Consensus 227 da~LA~AlmSI~AvKGvEiG~GF~~a~~~ 255 (370)
T 1sq1_A 227 DSKLAHALMGINAVKAVEIGEGINASKMR 255 (370)
T ss_dssp HHHHHHHHHTSTTEEEEEETTGGGGGGSC
T ss_pred hHHHHHHhcCccceeEEEeccchhhhhcc
Confidence 46799999999999999999998655443
No 20
>1qxo_A Chorismate synthase; beta-alpha-beta, flavoprotein, shikimate, anti-infective, lyase; HET: FMN EPS; 2.00A {Streptococcus pneumoniae} SCOP: d.258.1.1
Probab=39.15 E-value=11 Score=33.31 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=24.8
Q ss_pred cCcHHHHhccCCCCeeEEEEeCCeEEEEec
Q 028908 37 MNSPLAKSLYGVDGITRVFFGSDFITVTKS 66 (202)
Q Consensus 37 ~~spLa~~Lf~i~gV~~Vf~~~dfItVtk~ 66 (202)
..+.||.+||.|+.||.|.|+..|=...+.
T Consensus 239 Lda~LA~AlmSI~AvKGvEiG~GF~~a~~~ 268 (388)
T 1qxo_A 239 LDARLAQAVVSINAFKGVEFGLGFEAGYRK 268 (388)
T ss_dssp HHHHHHHHHHTSTTEEEEEETTGGGGGGSB
T ss_pred chHHHHHHhcCcCceeEEEECcchhhhhcc
Confidence 356899999999999999999988554443
No 21
>1q1l_A Chorismate synthase; beta alpha beta sandwich, structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.05A {Aquifex aeolicus} SCOP: d.258.1.1
Probab=38.19 E-value=12 Score=33.29 Aligned_cols=34 Identities=15% Similarity=0.333 Sum_probs=26.5
Q ss_pred ecCChhhhcCcHHHHhccCCCCeeEEEEeCCeEEEEe
Q 028908 29 DFPNARAAMNSPLAKSLYGVDGITRVFFGSDFITVTK 65 (202)
Q Consensus 29 ~f~~~~~a~~spLa~~Lf~i~gV~~Vf~~~dfItVtk 65 (202)
.|.+.- .+.||.+||.|+.||.|.|+..|=...+
T Consensus 247 ~fdkrL---da~LA~AlmSI~AvKGvEiG~GF~~a~~ 280 (401)
T 1q1l_A 247 QWDRRI---DGRIAQAMMSIQAIKGVEIGLGFEAARR 280 (401)
T ss_dssp SGGGCH---HHHHHHHHHTSTTEEEEEETTGGGGGGS
T ss_pred cccccc---hHHHHHHhcCcCceeEEEECcchhhhhc
Confidence 555532 4579999999999999999998855444
No 22
>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A
Probab=38.03 E-value=52 Score=20.90 Aligned_cols=32 Identities=25% Similarity=0.627 Sum_probs=20.7
Q ss_pred EEEEEecc-CCCCCcchHHHHHHHHHHHHHhhCCCcceEEe
Q 028908 147 TVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQ 186 (202)
Q Consensus 147 ~v~v~l~G-aC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~ 186 (202)
.+.++..| .|.+|.. .|++.|.. +|.|..+..
T Consensus 10 ~~~~~v~gm~C~~C~~-------~ie~~l~~-~~GV~~~~v 42 (84)
T 1q8l_A 10 VLKMKVEGMTCHSCTS-------TIEGKIGK-LQGVQRIKV 42 (84)
T ss_dssp EEEEEECCTTTCSSCH-------HHHHHHHT-CTTEEEEEE
T ss_pred EEEEEECCcccHHHHH-------HHHHHHHc-CCCeEEEEE
Confidence 45667766 5888864 36666665 677765543
No 23
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=37.03 E-value=15 Score=19.71 Aligned_cols=10 Identities=50% Similarity=0.936 Sum_probs=8.4
Q ss_pred CcchHHHHHH
Q 028908 159 CPSSSVTLKS 168 (202)
Q Consensus 159 Cpss~~Tl~~ 168 (202)
||+|..+|+.
T Consensus 1 cpss~~sL~E 10 (26)
T 3bej_E 1 CPSSHSSLTE 10 (26)
T ss_pred CCCchhhHHH
Confidence 8999988865
No 24
>2o11_A Chorismate synthase; shikimate pathway, LYA; 1.65A {Mycobacterium tuberculosis} PDB: 2o12_A* 2qhf_A 2g85_A 1ztb_A
Probab=35.56 E-value=11 Score=33.51 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=23.8
Q ss_pred CcHHHHhccCCCCeeEEEEeCCeEEEEe
Q 028908 38 NSPLAKSLYGVDGITRVFFGSDFITVTK 65 (202)
Q Consensus 38 ~spLa~~Lf~i~gV~~Vf~~~dfItVtk 65 (202)
.+.||.+||.|+.||.|.|+..|=...+
T Consensus 245 da~LA~AlmSI~AvKGvEiG~GF~~a~~ 272 (407)
T 2o11_A 245 DSQLAAAVMGIQAIKGVEIGDGFQTARR 272 (407)
T ss_dssp HHHHHHHHHTSTTEEEEEETTHHHHTTS
T ss_pred hHHHHHHhcCcCceeeEEeccchhhhhc
Confidence 4679999999999999999998855444
No 25
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=35.15 E-value=16 Score=25.36 Aligned_cols=10 Identities=40% Similarity=1.318 Sum_probs=8.3
Q ss_pred ccCCCCCcch
Q 028908 153 QGACSGCPSS 162 (202)
Q Consensus 153 ~GaC~gCpss 162 (202)
+|+|.+||.+
T Consensus 58 sgsC~sC~~~ 67 (87)
T 2k02_A 58 SGSCKSCPEG 67 (87)
T ss_dssp SSSSSSCSSC
T ss_pred CCCCCCCCCc
Confidence 4889999986
No 26
>1r53_A Chorismate synthase; two layers alpha-beta, lyase; 2.20A {Saccharomyces cerevisiae} SCOP: d.258.1.1 PDB: 1r52_A
Probab=34.30 E-value=11 Score=33.46 Aligned_cols=29 Identities=21% Similarity=0.287 Sum_probs=24.6
Q ss_pred CcHHHHhccCCCCeeEEEEeCCeEEEEec
Q 028908 38 NSPLAKSLYGVDGITRVFFGSDFITVTKS 66 (202)
Q Consensus 38 ~spLa~~Lf~i~gV~~Vf~~~dfItVtk~ 66 (202)
.+.||.+||+|+.||.|.|+..|=...+.
T Consensus 239 da~LA~A~mSI~AvKGvEiG~GF~~a~~~ 267 (382)
T 1r53_A 239 EAMLAHAMLSIPASKGFEIGSGFQGVSVP 267 (382)
T ss_dssp HHHHHHHHHTSTTBCCCEETTTTGGGGSC
T ss_pred hHHHHHHhcCccceeEEEeccchhhhhcc
Confidence 46799999999999999999998655443
No 27
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=33.07 E-value=14 Score=24.97 Aligned_cols=10 Identities=40% Similarity=1.318 Sum_probs=7.5
Q ss_pred ccCCCCCcch
Q 028908 153 QGACSGCPSS 162 (202)
Q Consensus 153 ~GaC~gCpss 162 (202)
+|+|.+||.+
T Consensus 58 ~g~C~~C~~~ 67 (78)
T 1xn7_A 58 SGSCKSCPEG 67 (78)
T ss_dssp CSSCCCCCCC
T ss_pred CCCCCCCCCC
Confidence 4678888875
No 28
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A
Probab=30.40 E-value=33 Score=25.51 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=29.7
Q ss_pred cCCCEEEEEEecCCCEEEEEec-cC-CCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCcch
Q 028908 132 DGGDIEYRGFDPETGTVKLRMQ-GA-CSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAED 192 (202)
Q Consensus 132 dGGdiel~~~d~~~g~v~v~l~-Ga-C~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~ 192 (202)
+|..+.+-++. +..+.|-+- +. |..|+.....|....+. +.+.-|-...|..+
T Consensus 33 ~G~~v~l~~~~--gk~vvl~F~~t~~C~~C~~~~~~l~~l~~~------~~v~vv~Is~D~~~ 87 (175)
T 1xvq_A 33 DLGVISSDQFR--GKSVLLNIFPSVDTPVCATSVRTFDERAAA------SGATVLCVSKDLPF 87 (175)
T ss_dssp TSCEEEGGGGT--TSCEEEEECSCCCSSCCCHHHHHHHHHHHH------TTCEEEEEESSCHH
T ss_pred CCCEEeHHHcC--CCEEEEEEEeCCCCchHHHHHHHHHHHHhh------cCCEEEEEECCCHH
Confidence 45556665543 445555554 66 99998766655443332 66654444444433
No 29
>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A
Probab=27.75 E-value=1.1e+02 Score=18.67 Aligned_cols=31 Identities=26% Similarity=0.573 Sum_probs=18.7
Q ss_pred EEEEEecc-CCCCCcchHHHHHHHHHHHHHhhCCCcceEE
Q 028908 147 TVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVE 185 (202)
Q Consensus 147 ~v~v~l~G-aC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~ 185 (202)
.+.++..| .|.+|.. .|++.|+. +|.|..+.
T Consensus 9 ~~~~~v~gm~C~~C~~-------~i~~~l~~-~~gv~~~~ 40 (79)
T 1kvi_A 9 SVTISVEGMTCNSCVW-------TIEQQIGK-VNGVHHIK 40 (79)
T ss_dssp EEEEEECCCCSTTTHH-------HHHHHHHH-SSSCCCEE
T ss_pred EEEEEECCccCHHHHH-------HHHHHHhc-CCCeEEEE
Confidence 45566666 4777743 46666665 67765444
No 30
>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A
Probab=27.47 E-value=74 Score=19.19 Aligned_cols=31 Identities=23% Similarity=0.581 Sum_probs=18.5
Q ss_pred EEEEEeccC-CCCCcchHHHHHHHHHHHHHhhCCCcceEE
Q 028908 147 TVKLRMQGA-CSGCPSSSVTLKSGIENMLMHYVPEVKSVE 185 (202)
Q Consensus 147 ~v~v~l~Ga-C~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~ 185 (202)
.+.++..|- |.+|. ..|++.|+. +|.|..+.
T Consensus 4 ~~~~~v~gm~C~~C~-------~~ie~~l~~-~~gV~~~~ 35 (73)
T 1mwy_A 4 RYSWKVSGMDCAACA-------RKVENAVRQ-LAGVNQVQ 35 (73)
T ss_dssp EEEEEEESCCSTTHH-------HHHHHHHHT-SSSEEEEE
T ss_pred EEEEEECCcCCHHHH-------HHHHHHHhc-CCCeeEEE
Confidence 345666664 66553 346777765 67776554
No 31
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=26.44 E-value=53 Score=19.75 Aligned_cols=32 Identities=25% Similarity=0.522 Sum_probs=19.6
Q ss_pred CEEEEEecc-CCCCCcchHHHHHHHHHHHHHhhCCCcceEE
Q 028908 146 GTVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVE 185 (202)
Q Consensus 146 g~v~v~l~G-aC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~ 185 (202)
+.+.++..| .|.+|. ..|++.|+. +|.|..+.
T Consensus 4 ~~~~~~v~gm~C~~c~-------~~i~~~l~~-~~gv~~~~ 36 (75)
T 1yjr_A 4 GVLELVVRGMTCASCV-------HKIESSLTK-HRGILYCS 36 (75)
T ss_dssp CCEEEEEETCCTTTHH-------HHHHHHHTT-STTEEEEE
T ss_pred eEEEEEECCcccHHHH-------HHHHHHHHc-CCCEEEEE
Confidence 456677776 466664 246666665 67776554
No 32
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=25.74 E-value=90 Score=18.52 Aligned_cols=31 Identities=26% Similarity=0.657 Sum_probs=18.5
Q ss_pred EEEEEeccC-CCCCcchHHHHHHHHHHHHHhhCCCcceEE
Q 028908 147 TVKLRMQGA-CSGCPSSSVTLKSGIENMLMHYVPEVKSVE 185 (202)
Q Consensus 147 ~v~v~l~Ga-C~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~ 185 (202)
...++..|- |.+|. ..|+..|.. +|.|..+.
T Consensus 7 ~~~~~v~gm~C~~C~-------~~i~~~l~~-~~gv~~~~ 38 (76)
T 1opz_A 7 EIAMQVSGMTCAACA-------ARIEKGLKR-MPGVTDAN 38 (76)
T ss_dssp EEEEEEESCCSTTHH-------HHHHHHHHT-STTEEEEE
T ss_pred EEEEEECCcccHHHH-------HHHHHHHhc-CCCeEEEE
Confidence 345666664 66663 336777765 67776554
No 33
>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10
Probab=25.43 E-value=75 Score=23.53 Aligned_cols=55 Identities=9% Similarity=0.003 Sum_probs=30.5
Q ss_pred CEEEEEEecCCCEEEEEec--cCCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCcchHH
Q 028908 135 DIEYRGFDPETGTVKLRMQ--GACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDEV 194 (202)
Q Consensus 135 diel~~~d~~~g~v~v~l~--GaC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~~~ 194 (202)
.+.+-++. +..+.|-+- .-|..|+.....|.. +...++.. .+.-|-...|..+..
T Consensus 23 ~~~l~~~~--gk~vvl~F~~a~~C~~C~~~~~~l~~-~~~~~~~~--~v~vv~vs~d~~~~~ 79 (187)
T 1we0_A 23 EVTEADLK--GKWSIVVFYPADFSFVCPTELEDVQK-EYAELKKL--GVEVYSVSTDTHFVH 79 (187)
T ss_dssp EEETTTTS--SSEEEEEECSCTTCSSCTHHHHHHHH-HHHHHHHT--TEEEEEEESSCHHHH
T ss_pred EecHHHHC--CCCEEEEEECCCCCcchHHHHHHHHH-HHHHHHHc--CCEEEEEECCCHHHH
Confidence 55555443 456666664 568889877666644 44455543 454444444444333
No 34
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Probab=25.12 E-value=22 Score=25.89 Aligned_cols=55 Identities=5% Similarity=0.036 Sum_probs=30.0
Q ss_pred hcCCCEEEEEEecCCCEEEEEe-ccC-CCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCcch
Q 028908 131 DDGGDIEYRGFDPETGTVKLRM-QGA-CSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAED 192 (202)
Q Consensus 131 ~dGGdiel~~~d~~~g~v~v~l-~Ga-C~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~ 192 (202)
.+|..+.+-++. +..+.|-+ ... |..|+.....|.. ..+++ +.+.-|-...|..+
T Consensus 32 ~~G~~~~l~~~~--gk~~vl~F~~~~~C~~C~~~~~~l~~----l~~~~-~~~~vv~is~d~~~ 88 (167)
T 2jsy_A 32 NSLEEKSLADMK--GKVTIISVIPSIDTGVCDAQTRRFNE----EAAKL-GDVNVYTISADLPF 88 (167)
T ss_dssp TTCCEEEHHHHT--TSCEEEEECSCSTTSHHHHTHHHHHH----HHHHH-SSCEEEEEECSSGG
T ss_pred CCCCEeeHHHhC--CCeEEEEEecCCCCCchHHHHHHHHH----HHHHc-CCCEEEEEECCCHH
Confidence 356666666554 44555554 354 8878766555543 33333 66665555555433
No 35
>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*
Probab=24.79 E-value=93 Score=21.46 Aligned_cols=48 Identities=15% Similarity=-0.009 Sum_probs=37.5
Q ss_pred HHHhccCCCCeeEEEEeCCeEEEEecCCCChhhhhHHHHHHHHHHHhc
Q 028908 41 LAKSLYGVDGITRVFFGSDFITVTKSEDTSWDLLKPEIFAAIMDFYSS 88 (202)
Q Consensus 41 La~~Lf~i~gV~~Vf~~~dfItVtk~~~~~W~~l~~~I~~~I~d~l~s 88 (202)
+-..+.+...|++|-+.++.|+|+-.....|..+...+...+.+.+.+
T Consensus 23 l~~~iv~lG~V~~v~v~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~ 70 (103)
T 3cq1_A 23 LGLDVVNLGLIYDLVVEPPRAYVRMTLTTPGCPLHDSLGEAVRQALSR 70 (103)
T ss_dssp TCSBTTTTTCEEEEEEETTEEEEEECCSSSSCCSSCHHHHHHHHHHHT
T ss_pred CCcCchhcCceEEEEEECCEEEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 556777778899999998899898888777777777777777777653
No 36
>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}
Probab=24.48 E-value=84 Score=21.95 Aligned_cols=31 Identities=35% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEEecc-CCCCCcchHHHHHHHHHHHHHhhCCCcceEE
Q 028908 147 TVKLRMQG-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVE 185 (202)
Q Consensus 147 ~v~v~l~G-aC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~ 185 (202)
.+.+++.| .|.+|. ..|+..|+. +|.|..+.
T Consensus 5 ~~~~~v~gm~C~~C~-------~~ie~~l~~-~~gv~~~~ 36 (149)
T 2ew9_A 5 KCFLQIKGMTCASCV-------SNIERNLQK-EAGVLSVL 36 (149)
T ss_dssp EEEEEEECCCSSSHH-------HHHHHHHHT-TSSCCCEE
T ss_pred EEEEEECCeecHHHH-------HHHHHHHhc-CCCcEEEE
Confidence 35567766 555553 347777776 77776544
No 37
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=24.25 E-value=18 Score=24.33 Aligned_cols=15 Identities=40% Similarity=0.970 Sum_probs=10.6
Q ss_pred CCCCCcch-HHHHHHH
Q 028908 155 ACSGCPSS-SVTLKSG 169 (202)
Q Consensus 155 aC~gCpss-~~Tl~~~ 169 (202)
.|-|||++ ..||..+
T Consensus 29 ~C~gC~~a~~~tLeeA 44 (76)
T 2k53_A 29 HCLGCPSSMGESIEDA 44 (76)
T ss_dssp CCCSSCCCCCSBHHHH
T ss_pred CCCCCCccccccHHHH
Confidence 39999976 4666554
No 38
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A
Probab=24.04 E-value=41 Score=26.67 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=18.0
Q ss_pred cchhhhhcCCCEEEEEEecCCCEEEEEe
Q 028908 125 IRPAVQDDGGDIEYRGFDPETGTVKLRM 152 (202)
Q Consensus 125 IrP~l~~dGGdiel~~~d~~~g~v~v~l 152 (202)
+|-.++.|||.|.+.+ .+++-+++|+|
T Consensus 219 ~~~iv~~hGG~i~v~s-~~~G~~f~v~L 245 (247)
T 4fpp_A 219 LNALVRAAGGQIAVEI-GEDRASIAAWV 245 (247)
T ss_dssp HHHHHHHTTCEEEEEE-ETTEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEE-cCCEEEEEEEe
Confidence 4667899999999875 33222455554
No 39
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Probab=23.28 E-value=50 Score=25.39 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=30.1
Q ss_pred hcCCCEEEEEEecCCCEEEEEec-c-CCCCCcchHHHHHHHHHHHHHhhCCCcceEEecCCcchH
Q 028908 131 DDGGDIEYRGFDPETGTVKLRMQ-G-ACSGCPSSSVTLKSGIENMLMHYVPEVKSVEQELDAEDE 193 (202)
Q Consensus 131 ~dGGdiel~~~d~~~g~v~v~l~-G-aC~gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~~~~~ 193 (202)
.+|..+.+-++. +..+.|-+- + -|..|+.....|. +..+++ ..+.-|-...|..+.
T Consensus 66 ~~G~~v~L~d~~--Gk~vvl~F~~~~~c~~C~~e~~~l~----~l~~~~-~~v~vv~Is~D~~~~ 123 (200)
T 3zrd_A 66 KDLSDVALSSFA--GKRKVLNIFPSIDTGVCAASVRKFN----QLAGEL-ENTVVLCISSDLPFA 123 (200)
T ss_dssp TTSCEEEGGGGT--TSEEEEEECSCCCCSCCCHHHHHHH----HHHHTS-TTEEEEEEESSCHHH
T ss_pred CCCCEEcHHHhC--CCcEEEEEECCCCCchhHHHHHHHH----HHHHHh-CCCEEEEEECCCHHH
Confidence 356666666554 556666664 4 4888887655543 333333 555444444443333
No 40
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.09 E-value=27 Score=28.52 Aligned_cols=16 Identities=31% Similarity=0.663 Sum_probs=11.1
Q ss_pred CEEEEEeccCCCCCcch
Q 028908 146 GTVKLRMQGACSGCPSS 162 (202)
Q Consensus 146 g~v~v~l~GaC~gCpss 162 (202)
|+|.| -.|+|+||-+.
T Consensus 192 avv~v-~~~~C~GC~~~ 207 (256)
T 3na7_A 192 SIVTI-KKQACGGCFIR 207 (256)
T ss_dssp SEEEC-BTTBCTTTCCB
T ss_pred eEEEe-eCCccCCCCee
Confidence 34444 26899999884
No 41
>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A
Probab=21.59 E-value=92 Score=22.32 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=31.1
Q ss_pred cCCCEEEEEEecCCCEEEEEe-ccCCC-CCcchHHHHHHHHHHHHHhhCCCcceEEecCC
Q 028908 132 DGGDIEYRGFDPETGTVKLRM-QGACS-GCPSSSVTLKSGIENMLMHYVPEVKSVEQELD 189 (202)
Q Consensus 132 dGGdiel~~~d~~~g~v~v~l-~GaC~-gCpss~~Tl~~~Ie~~l~~~~Pev~~V~~~~~ 189 (202)
+|..+.+-.+. +..+.|-+ ...|. .|+.....|.. +...+...-..+.-|-...|
T Consensus 22 ~G~~~~l~~~~--gk~vll~f~~~~C~~~C~~~~~~l~~-l~~~~~~~~~~~~vv~is~d 78 (174)
T 1xzo_A 22 DGKNVSLESLK--GEVWLADFIFTNCETICPPMTAHMTD-LQKKLKAENIDVRIISFSVD 78 (174)
T ss_dssp TSCEEETGGGT--TCCEEEEEECSCCSSCCCSHHHHHHH-HHHHHHHTTCCCEEEEEESC
T ss_pred CCCEEehhhcC--CCEEEEEEEcCCCcchhHHHHHHHHH-HHHHhhhcCCcEEEEEEEeC
Confidence 45555555443 34444444 57799 89998877754 55666664223544444344
No 42
>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A
Probab=20.73 E-value=1.4e+02 Score=20.49 Aligned_cols=49 Identities=10% Similarity=0.049 Sum_probs=39.0
Q ss_pred HHHHhccCCCCeeEEEEeC-CeEEEEecCCCChhhhhHHHHHHHHHHHhc
Q 028908 40 PLAKSLYGVDGITRVFFGS-DFITVTKSEDTSWDLLKPEIFAAIMDFYSS 88 (202)
Q Consensus 40 pLa~~Lf~i~gV~~Vf~~~-dfItVtk~~~~~W~~l~~~I~~~I~d~l~s 88 (202)
.+-..+.+...|++|-+.+ +.|+|+-.-...|..+...+...+.+.+.+
T Consensus 22 el~~~iv~lG~V~~v~v~~~~~V~v~l~lt~~~cp~~~~l~~~i~~al~~ 71 (103)
T 1uwd_A 22 ELGLDVVSLGLVYDIQIDDQNNVKVLMTMTTPMCPLAGMILSDAEEAIKK 71 (103)
T ss_dssp TTSSBTTTTTCCCCEEECTTCEEEEEECCSSSCCSSHHHHHHHHHHHHHT
T ss_pred CCCcChhhcCCeeEEEEcCCCEEEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 3556777778899999986 788888888888888888888888887754
No 43
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A
Probab=20.52 E-value=54 Score=23.05 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=18.4
Q ss_pred cchhhhhcCCCEEEEEEecCCCEEEEEec
Q 028908 125 IRPAVQDDGGDIEYRGFDPETGTVKLRMQ 153 (202)
Q Consensus 125 IrP~l~~dGGdiel~~~d~~~g~v~v~l~ 153 (202)
++-.++.|||.+.+..-...+-++++++-
T Consensus 115 ~~~~~~~~gG~i~~~~~~~~G~~~~i~lP 143 (152)
T 1id0_A 115 AREITEQYEGKIVAGESMLGGARMEVIFG 143 (152)
T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEEC
T ss_pred HHHHHHHcCCEEEEEeCCCCcEEEEEEEe
Confidence 44556789999999765432234566663
No 44
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A
Probab=20.10 E-value=56 Score=23.03 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=18.3
Q ss_pred cchhhhhcCCCEEEEEEecCCCEEEEEe
Q 028908 125 IRPAVQDDGGDIEYRGFDPETGTVKLRM 152 (202)
Q Consensus 125 IrP~l~~dGGdiel~~~d~~~g~v~v~l 152 (202)
++-.++.|||.+.+..-..++-++++++
T Consensus 119 ~~~~~~~~gG~i~~~~~~~~G~~~~i~l 146 (150)
T 1ysr_A 119 VAQQAQLHGGTASLENSPLGGARLVLRL 146 (150)
T ss_dssp HHHHHHHTTCEEEEEECTTSSEEEEEEE
T ss_pred HHHHHHHcCCEEEEeecCCCCEEEEEEE
Confidence 4556788999999986543223455665
No 45
>2zzt_A Putative uncharacterized protein; cation diffusion facilitator (CDF), transporter, zinc, membrane protein, cytosolic domain; 2.84A {Thermotoga maritima}
Probab=20.02 E-value=2.2e+02 Score=19.53 Aligned_cols=22 Identities=14% Similarity=0.240 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhCCCcceEEe
Q 028908 165 TLKSGIENMLMHYVPEVKSVEQ 186 (202)
Q Consensus 165 Tl~~~Ie~~l~~~~Pev~~V~~ 186 (202)
.+...|+..|++.+|.|..|..
T Consensus 59 ~i~~~ie~~L~~~~~~i~~vtI 80 (107)
T 2zzt_A 59 ELTVKIRKEMLKRRDDIEDVTI 80 (107)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEE
T ss_pred HHHHHHHHHHHHHCCCCcEEEE
Confidence 5778899999999998866554
Done!