BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028909
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QV0|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Mam33
Length = 227
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 39/54 (72%)
Query: 142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
+Y GP FS+LD +LQ +L+ YL +RG+ E L +++ + KE ++Y++WL+K+
Sbjct: 169 VYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKM 222
>pdb|3JV1|A Chain A, Crystal Structure Of The Trypanosoma Brucei P22 Protein
Length = 182
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA 200
LY GP + L+ L + YL ARG+ + L N++ EQ Y WL + V+
Sbjct: 124 LYMGPDLADLEDHLVDSFTSYLSARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS 182
>pdb|1YQF|A Chain A, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|B Chain B, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|C Chain C, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|D Chain D, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|E Chain E, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
pdb|1YQF|F Chain F, Hypothetical Protein From Leishmania Major Unknown
Function Sequence Homologue To Human P32 Protein
Length = 203
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA 200
LY GP+ LD L + YL RG+ E L +++L+ EQ Y WL + +
Sbjct: 145 LYTGPLVHELDYDLLNCVMTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 203
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|B Chain B, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|C Chain C, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|D Chain D, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|E Chain E, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|F Chain F, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|G Chain G, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
pdb|4DPG|H Chain H, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I
Length = 513
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 46 GDFKVEY--DAP--QSHDVVLRTKFESGEEVA-VSALLG---PETFVRESRFPREVLMKV 97
G +KV Y D P Q++DV F V + LG PET + E+ R++L +
Sbjct: 299 GSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDI 358
Query: 98 CLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQV 157
C+ K V C + R+ +K + G ++ TC+ P F PQ+
Sbjct: 359 CVAKAVECPPPRTTARLLDKLV-GEFLEV---------TCI------NPTFICDHPQIMS 402
Query: 158 ALKEYLVARGIGEHLTNYLLLHLHKKE 184
L ++ ++ E LT L + KKE
Sbjct: 403 PLAKWHRSK---EGLTERFELFVMKKE 426
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|B Chain B, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|C Chain C, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
pdb|3BJU|D Chain D, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna
Synthetase
Length = 521
Score = 30.0 bits (66), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 27/147 (18%)
Query: 46 GDFKVEY--DAP--QSHDVVLRTKFESGEEVA-VSALLG---PETFVRESRFPREVLMKV 97
G +KV Y D P Q++DV F V + LG PET + E+ R++L +
Sbjct: 299 GSYKVTYHPDGPEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDI 358
Query: 98 CLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQV 157
C+ K V C + R+ +K + G ++ TC+ P F PQ+
Sbjct: 359 CVAKAVECPPPRTTARLLDKLV-GEFLEV---------TCI------NPTFICDHPQIMS 402
Query: 158 ALKEYLVARGIGEHLTNYLLLHLHKKE 184
L ++ ++ E LT L + KKE
Sbjct: 403 PLAKWHRSK---EGLTERFELFVMKKE 426
>pdb|2GRE|A Chain A, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|B Chain B, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|C Chain C, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|D Chain D, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|E Chain E, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|F Chain F, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|G Chain G, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|H Chain H, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|I Chain I, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|J Chain J, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|K Chain K, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|L Chain L, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|M Chain M, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|N Chain N, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|O Chain O, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
pdb|2GRE|P Chain P, Crystal Structure Of Deblocking Aminopeptidase From
Bacillus Cereus
Length = 349
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%)
Query: 148 FSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYV 189
F S DP++Q+ Y+ +R + + ++ +LL L K+ QD+ V
Sbjct: 165 FVSFDPRVQITESGYIKSRHLDDKVSVAILLKLIKRLQDENV 206
>pdb|1P32|A Chain A, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|B Chain B, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
pdb|1P32|C Chain C, Crystal Structure Of Human P32, A Doughnut-Shaped Acidic
Mitochondrial Matrix Protein
Length = 209
Score = 26.9 bits (58), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 108 LQFDCRVTEKHIEGSD------FDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKE 161
L DC E + D F IR + + + SLD L L +
Sbjct: 109 LVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMD 168
Query: 162 YLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMV 199
+L RG+ + L+ E +Y+ +L+ L+S V
Sbjct: 169 FLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFV 206
>pdb|3RPX|A Chain A, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|B Chain B, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
pdb|3RPX|C Chain C, Crystal Structure Of Complement Component 1, Q
Subcomponent Binding Protein, C1qbp
Length = 194
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 6/98 (6%)
Query: 108 LQFDCRVTEKHIEGSD------FDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKE 161
L DC E + D F IR + + + SLD L L +
Sbjct: 87 LVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTLNTDSLDWALYDHLMD 146
Query: 162 YLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMV 199
+L RG+ + L+ E +Y+ +L+ L+S V
Sbjct: 147 FLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFV 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,823,323
Number of Sequences: 62578
Number of extensions: 228116
Number of successful extensions: 595
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 591
Number of HSP's gapped (non-prelim): 8
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)