BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028909
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40513|MAM33_YEAST Mitochondrial acidic protein MAM33 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MAM33 PE=1 SV=1
Length = 266
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 39/54 (72%)
Query: 142 LYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKL 195
+Y GP FS+LD +LQ +L+ YL +RG+ E L +++ + KE ++Y++WL+K+
Sbjct: 208 VYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKM 261
>sp|O94675|MAM33_SCHPO Mitochondrial acidic protein mam33 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC776.07 PE=3 SV=1
Length = 269
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 10/82 (12%)
Query: 124 FDIRNAYYLQSSTCLG----------RPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLT 173
FDI N Y+ + L R Y GP F LDP+LQ YL R I E L+
Sbjct: 183 FDIENIYFSKDIDMLTSDSLEAEWKRRKQYLGPSFKELDPELQDLFHSYLEERKIDESLS 242
Query: 174 NYLLLHLHKKEQDQYVNWLQKL 195
++++ KE +Y+NWL+ +
Sbjct: 243 SFIVSFGLTKELKEYINWLESV 264
>sp|Q8W487|YB95_ARATH Uncharacterized protein At2g39795, mitochondrial OS=Arabidopsis
thaliana GN=At2g39795 PE=1 SV=1
Length = 250
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 20 LLKILNSEITHELSSNRFQDNQSGTLGDF--KVEYDAPQSHDVVLRTKFESGEEVAVSAL 77
L+++++SEI L S+ ++ T G F ++E D P + +V L T+ +GE + V
Sbjct: 65 LIRVIDSEINSALQSDNIDSDEEMTPGSFPFRIE-DKPGNQNVTL-TRDYNGEHIKVVVS 122
Query: 78 L----------------GPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEG 121
+ GP ES P + V +TK + L+F C I
Sbjct: 123 MPSLVSDENDDDDDDDEGPSN---ESSIP----LVVTVTKKSGLT-LEFSCMAFPDEIAI 174
Query: 122 SDFDIRNAYYLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLH 181
+++ + + GP F LD L+ ++L RG+ TN+L ++
Sbjct: 175 DALSVKHP----GDSLEDQLANEGPDFEDLDENLKKTFYKFLEIRGVKASTTNFLHEYMT 230
Query: 182 KKEQDQYVNWLQKLE 196
+K +Y WL+ ++
Sbjct: 231 RKVNREYFLWLKNVK 245
>sp|O22288|Y2979_ARATH Uncharacterized protein At2g39790, mitochondrial OS=Arabidopsis
thaliana GN=At2g39790 PE=3 SV=2
Length = 240
Score = 38.9 bits (89), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 78/189 (41%), Gaps = 28/189 (14%)
Query: 23 ILNSEITHELSSNRFQDNQSGTLGDFKVEY-DAPQSHDVVLRTKFESGEEVAVSA----- 76
+++SE+ L ++ N+ G F ++ D P V L T + + E + V
Sbjct: 66 VIDSELNSALQTDDPNLNEEMAPGSFPLKIRDKPGDQSVTL-TAYYNDERIHVDVGMPYL 124
Query: 77 ------LLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAY 130
+ GP E FP + V + K SI +F C+ +I+ +D + +
Sbjct: 125 GDDVIDVFGPNN--DELSFP----LVVTVIKKNGVSI-EFTCQAYADYIDLTDLTVHDYQ 177
Query: 131 YLQSSTCLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVN 190
Y T P F +LD L+ A YL R + ++T L ++ K + +Y+
Sbjct: 178 YQMGET-------DWPRFKNLDDNLKKAFHRYLATR-LDANITKLLHKYMVSKIKREYLL 229
Query: 191 WLQKLESMV 199
WL+ + V
Sbjct: 230 WLKNVNKFV 238
>sp|Q7UKH3|EFTS_RHOBA Elongation factor Ts OS=Rhodopirellula baltica (strain SH1) GN=tsf
PE=3 SV=1
Length = 326
Score = 37.0 bits (84), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 21/176 (11%)
Query: 13 KALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVV----LRTKFES 68
K + D+N L+I + + L N++G +G+ K+E + +VV L + +
Sbjct: 106 KTIDDVNALEIDGTTVKERLV------NETGKVGE-KIEV---TNLEVVEGENLASYIHA 155
Query: 69 GEEVAVSALLGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRN 128
G ++ V +F R V M + KP + +FD +K E I
Sbjct: 156 GAKIGVLVSYKDGAKDDADQFFRGVSMHIAAMKPSILHPNEFDEEFVQKETEALQAQINA 215
Query: 129 AYYLQSSTCLGRPLYRGPMFSS---LDPQL----QVALKEYLVARGIGEHLTNYLL 177
L LG+P+ P F+S L P++ + A+KE L A G E + + ++
Sbjct: 216 ENELNEKENLGKPMKNVPQFASRRQLTPEVLAATEEAIKEELKAEGKPEKIWDKIV 271
>sp|Q7N215|HMP_PHOLL Flavohemoprotein OS=Photorhabdus luminescens subsp. laumondii
(strain TT01) GN=hmp PE=3 SV=1
Length = 396
Score = 32.3 bits (72), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 144 RGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLE 196
RG F + P+ V L ++ G+G +L HLH++ + +NWL E
Sbjct: 249 RGDFFLDIKPETPVTL----ISAGVGLTPMMSMLYHLHQQNHNSPINWLHAAE 297
>sp|Q7M8H7|SYV_WOLSU Valine--tRNA ligase OS=Wolinella succinogenes (strain ATCC 29543 /
DSM 1740 / LMG 7466 / NCTC 11488 / FDC 602W) GN=valS
PE=3 SV=1
Length = 894
Score = 31.6 bits (70), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 43 GTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRES 87
G L D +VEYDA + LR F+ + V A PETF ++
Sbjct: 206 GALSDIEVEYDANKGKLYHLRYFFKDSSDYIVVATTRPETFFGDT 250
>sp|P14239|NCAP_JUNIN Nucleoprotein OS=Junin arenavirus GN=N PE=1 SV=1
Length = 564
Score = 31.2 bits (69), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 8 LRKGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDF-KVEYDAPQSHDVVLRTKF 66
LRK ++ +DLN L+ LN E+ +S Q N GD +VE S L+TKF
Sbjct: 54 LRKTKRGEEDLNKLRDLNKEVDRLMSMRSVQRNTVFKAGDLGRVERMELASGLGNLKTKF 113
Query: 67 ESGEEVAVSALLG 79
E + +G
Sbjct: 114 RRAETGSQGVYMG 126
>sp|Q8CIQ7|DOCK3_MOUSE Dedicator of cytokinesis protein 3 OS=Mus musculus GN=Dock3 PE=1 SV=1
Length = 2027
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 82 TFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIR--NAYYLQSSTCLG 139
++ S FPR+ ++ LT ++ + +Q+ K+ +DFD + N+Y+ + +
Sbjct: 983 NLMKMSVFPRDWMVMRLLTSNIIVTTVQYLSSALHKNFTETDFDFKVWNSYFSLAVLFIN 1042
Query: 140 RPLYRGPMFSSL----------DPQLQVALKEYLVARGIGEHLTNYL 176
+P + + +S D ++ +A + + + + +GEH +++
Sbjct: 1043 QPSLQLEIITSAKRKKILDKYGDMRVMMAYELFSMWQNLGEHKIHFI 1089
>sp|Q8IZD9|DOCK3_HUMAN Dedicator of cytokinesis protein 3 OS=Homo sapiens GN=DOCK3 PE=1 SV=1
Length = 2030
Score = 30.8 bits (68), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/107 (18%), Positives = 52/107 (48%), Gaps = 12/107 (11%)
Query: 82 TFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIR--NAYYLQSSTCLG 139
++ S FPR+ ++ LT ++ + +Q+ K+ +DFD + N+Y+ + +
Sbjct: 986 NLMKMSVFPRDWMVMRLLTSNIIVTTVQYLSSALHKNFTETDFDFKVWNSYFSLAVLFIN 1045
Query: 140 RPLYRGPMFSSL----------DPQLQVALKEYLVARGIGEHLTNYL 176
+P + + +S D ++ +A + + + + +GEH +++
Sbjct: 1046 QPSLQLEIITSAKRKKILDKYGDMRVMMAYELFSMWQNLGEHKIHFI 1092
>sp|Q21018|CRI3_CAEEL Conserved regulator of innate immunity protein 3 OS=Caenorhabditis
elegans GN=cri-3 PE=1 SV=2
Length = 236
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 79/203 (38%), Gaps = 29/203 (14%)
Query: 20 LLKILNSEITHE--LSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSAL 77
L + LN EI E LSS+ Q + T F+V + D +R ++G E +
Sbjct: 42 LQQALNREIEAEQQLSSDNLQGAVAPTFAGFQV-----TNKDAEVRLTKKNGSEDILVVF 96
Query: 78 LGPETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEK------HIE-------GSDF 124
+ + F E V PV ++ F +T+ H+E ++
Sbjct: 97 NVNHSVDMDEGFDDEPSQAVA---PVPVAMPPFTVEITKGDQRLCFHLELVPVDDQPDEY 153
Query: 125 DIR-NAYYLQSSTCLGRPLYRGPMFSS----LDPQLQ-VALKEYLVARGIGEHLTNYLLL 178
D R +Y+ S G +++S +DP L + YL RG+ L+
Sbjct: 154 DFRVEEFYVAPSAKNGNEDVPSEVYASSGKYIDPDLHDLLFVRYLEERGLDARFCKTLVA 213
Query: 179 HLHKKEQDQYVNWLQKLESMVAK 201
+ E QYV L K++ ++K
Sbjct: 214 YATHYEHSQYVGLLDKIKKFISK 236
>sp|Q9MZ08|BCAM_BOVIN Basal cell adhesion molecule OS=Bos taurus GN=BCAM PE=2 SV=2
Length = 628
Score = 30.0 bits (66), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 23 ILNSEITHELSSNRFQDNQSGTLG----DFKVEYDAPQSHDVVLRTKF------ESGEEV 72
+L + + L+ R Q NQSGT G DF V DA S + LR + +GEE+
Sbjct: 313 VLKTSLEGNLTLERVQRNQSGTYGCRVEDFDVPEDAELSKTLELRVAYLDSLELSAGEEL 372
Query: 73 AV 74
++
Sbjct: 373 SL 374
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,618,133
Number of Sequences: 539616
Number of extensions: 2821337
Number of successful extensions: 6279
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6272
Number of HSP's gapped (non-prelim): 15
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)