Query 028909
Match_columns 202
No_of_seqs 119 out of 329
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 06:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028909.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028909hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3jv1_A P22 protein; MAM33 fami 100.0 7.5E-50 2.6E-54 324.9 20.1 172 14-200 1-182 (182)
2 1yqf_A Hypothetical protein LM 100.0 2.3E-49 7.8E-54 327.1 20.2 177 10-200 17-203 (203)
3 1p32_A Mitochondrial matrix pr 100.0 1.3E-48 4.4E-53 323.9 22.0 185 12-202 1-209 (209)
4 3qv0_A Mitochondrial acidic pr 100.0 1.5E-44 5E-49 301.5 16.1 182 13-200 7-227 (227)
5 1t5q_A Gastric inhibitory poly 79.6 2.6 8.9E-05 23.6 3.6 25 170-194 4-28 (30)
6 3c5t_B Exendin-4, exenatide; l 79.0 1.8 6.1E-05 24.5 2.7 20 177-196 3-22 (31)
7 1jrj_A Exendin-4; Trp-CAGE, GL 76.3 2.1 7.1E-05 25.5 2.6 26 171-196 5-30 (39)
8 3vcf_A Probable integrase; cat 76.0 4.9 0.00017 31.3 5.5 46 150-195 103-163 (163)
9 2g49_C Glucagon preproprotein; 72.9 3.4 0.00012 23.0 2.8 24 171-194 5-28 (29)
10 2l63_A GLP-2, glucagon-like pe 70.4 2.9 9.8E-05 24.0 2.2 24 171-194 5-28 (33)
11 3iol_B Glucagon; receptor-liga 66.2 3.2 0.00011 23.3 1.8 23 172-194 6-28 (31)
12 2rrh_A VIP peptides; peptide h 59.5 20 0.00068 19.7 4.4 26 169-194 3-28 (29)
13 2b4n_A Gastric inhibitory poly 48.0 12 0.00041 22.5 2.2 21 176-196 10-30 (42)
14 1ci4_A Protein (barrier-TO-aut 43.7 17 0.00058 25.4 2.8 37 158-195 29-66 (89)
15 2k9i_A Plasmid PRN1, complete 42.4 51 0.0017 19.5 4.8 30 150-181 15-44 (55)
16 2zop_A Putative uncharacterize 40.0 41 0.0014 24.1 4.6 42 154-196 61-108 (114)
17 3htu_A Vacuolar protein-sortin 38.2 32 0.0011 23.4 3.4 24 144-167 40-63 (79)
18 2d2p_A Pituitary adenylate cyc 33.2 55 0.0019 19.2 3.5 24 171-194 5-28 (39)
19 3ewt_E Tumor necrosis factor r 32.4 17 0.00058 19.4 1.0 11 192-202 13-23 (25)
20 1e5p_A Aphrodisin; lipocalin, 30.3 39 0.0013 24.4 3.2 23 149-171 116-138 (151)
21 2l5p_A Lipocalin 12; beta barr 29.1 1.8E+02 0.0061 21.6 7.4 23 149-171 137-159 (184)
22 2k6x_A Sigma-A, RNA polymerase 28.7 60 0.002 21.1 3.6 19 151-169 40-58 (72)
23 1bj7_A D 2; allergen, lipocali 27.1 45 0.0015 24.2 3.0 22 150-171 122-143 (156)
24 2lep_A Rhomboid protease GLPG 32.9 13 0.00046 24.3 0.0 20 154-173 11-30 (69)
25 3v0r_A Major allergen ALT A 1; 25.8 80 0.0027 23.5 4.1 45 67-120 12-58 (133)
26 3sao_A Extracellular fatty aci 25.4 46 0.0016 24.4 2.8 23 149-171 118-140 (160)
27 3o22_A Prostaglandin-H2 D-isom 24.5 56 0.0019 23.9 3.1 23 149-171 125-147 (162)
28 1dzk_A PIG OBP, odorant-bindin 24.3 58 0.002 23.5 3.2 22 150-171 123-144 (157)
29 1lf7_A Complement protein C8ga 23.6 58 0.002 24.4 3.1 23 149-171 135-157 (182)
30 2hlv_A Odorant-binding protein 23.1 61 0.0021 23.6 3.1 23 149-171 123-145 (160)
31 2ouf_A Hypothetical protein; s 21.7 97 0.0033 21.7 3.7 40 156-195 41-89 (94)
32 2wvi_A Mitotic checkpoint seri 21.6 61 0.0021 24.9 2.9 30 157-186 80-109 (164)
33 3fiq_A OBP1, RCG36470, odorant 21.5 70 0.0024 23.5 3.2 23 149-171 122-144 (157)
34 3s26_A Neutrophil gelatinase-a 21.5 68 0.0023 24.3 3.2 23 149-171 144-166 (190)
35 2jxj_A Histone demethylase jar 21.4 39 0.0013 23.2 1.6 25 145-169 1-25 (96)
36 1ew3_A Allergen EQU C 1; lipoc 21.3 71 0.0024 23.1 3.1 23 149-171 121-143 (159)
37 1ylx_A Hypothetical protein AP 20.8 63 0.0021 22.9 2.5 18 153-170 14-31 (103)
38 1yz4_A DUSP15, dual specificit 20.6 1.7E+02 0.0057 21.1 5.2 40 155-195 114-156 (160)
39 2kjg_A Archaeal protein SSO690 20.4 58 0.002 22.7 2.2 25 8-32 11-35 (99)
40 4a1g_A Mitotic checkpoint seri 20.1 63 0.0021 24.5 2.6 31 156-186 84-114 (152)
41 1epa_A Epididymal retinoic aci 20.1 77 0.0026 22.9 3.1 23 150-172 122-144 (164)
No 1
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=100.00 E-value=7.5e-50 Score=324.93 Aligned_cols=172 Identities=20% Similarity=0.338 Sum_probs=149.6
Q ss_pred chhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeCCCCCCCCCCCCcce
Q 028909 14 ALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRFPREV 93 (202)
Q Consensus 14 ~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~~~~~~ed~~~~~~~ 93 (202)
+.+|++|+++|++||++|+++...+ ..|+.+.+|+|. |+||+++|+|+|+|| +|+|+|+|++.+++ |+ . ..+
T Consensus 1 ~~~d~~L~~~L~~EI~~E~~~~~~~-~~p~~~~~f~i~-d~pG~~~v~L~r~~~-~E~I~V~f~~~~ed---d~-~-~~~ 72 (182)
T 3jv1_A 1 AVSDQRLSEATLRELEDERQRAGLP-EKPEIPEGWTID-RKPGVTHFTMRKSHG-DEEIILQLTGEDRS---NE-E-ITR 72 (182)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSTTCC-CCCCCCTTCEEE-CCTTCCSCEEEEEET-TEEEEEEEEEECSS---CS-S-CCE
T ss_pred CcchHHHHHHHHHHHHHHHhccccc-CCCCCCCCCEEE-ecCCCcEEEEEEEeC-CcEEEEEEecCCcc---cc-c-cCc
Confidence 4689999999999999999986432 244466789996 999999999999999 59999999998642 21 1 258
Q ss_pred eeEEEEEcCCCCceEEEEeeecccccCCCceEEeeEEEecCCC----------CCCCCCccCCCCCCCCHHHHHHHHHHH
Q 028909 94 LMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSST----------CLGRPLYRGPMFSSLDPQLQVALKEYL 163 (202)
Q Consensus 94 ~~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~----------~~~~~~Y~GP~f~~LDe~Lq~~~~~yL 163 (202)
+|+|+|+| + +++|.|+|++++ +.|.|++|+++++.. +.+...|.||+|++||++||++|++||
T Consensus 73 ~~~V~I~K-~-~~~L~f~c~~~~-----~~~~I~~v~~~~~~~~a~~~~~e~~~~~~~~Y~GP~f~~LDe~Lq~~l~~yL 145 (182)
T 3jv1_A 73 TLDVLVVN-G-GKALVFGMSVED-----GEFVINNVCFRHDGKLALDTSAEAQFQKSQLYMGPDLADLEDHLVDSFTSYL 145 (182)
T ss_dssp EEEEEEEE-T-TEEEEEEEEEET-----TEEEEEEEEEESCHHHHHCCSHHHHHHHTTSCCCCCGGGSCHHHHHHHHHHH
T ss_pred cEEEEEEE-C-CcEEEEEEEecC-----CEEEEEEEEEeccchhhccccccccccccccccCCCccccCHHHHHHHHHHH
Confidence 89999999 4 589999999975 469999999998643 234579999999999999999999999
Q ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028909 164 VARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA 200 (202)
Q Consensus 164 eeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~ 200 (202)
++||||++||+||++||++|||+||++||++|++||+
T Consensus 146 eeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fvs 182 (182)
T 3jv1_A 146 SARGVNDTLANFIDQFSLWSEQADYEEWLSSINKFVS 182 (182)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999985
No 2
>1yqf_A Hypothetical protein LMAJ011689; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.30A {Leishmania major} SCOP: d.25.1.1
Probab=100.00 E-value=2.3e-49 Score=327.09 Aligned_cols=177 Identities=21% Similarity=0.356 Sum_probs=148.4
Q ss_pred hcccchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeCCCCCCCCCCC
Q 028909 10 KGQKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLGPETFVRESRF 89 (202)
Q Consensus 10 r~~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~~~~~~ed~~~ 89 (202)
...++++|.+|+++|++||++|+++...+ ..+..+++|+|. |.||+++|+|+|+|| +|+|+|+|++.+...+ |+
T Consensus 17 ~~~~~~~d~~L~~~L~~EI~~E~~~~~~~-~~~~~p~~F~i~-d~pG~~~v~L~R~~~-~E~I~V~f~~~~~~~~-de-- 90 (203)
T 1yqf_A 17 VPRRSASDAALADATRRELEEEMGRSDKP-EQPTPPAGWQVV-RKPGTCTFDLTKSFE-GEDLVVRYSTNQDSDK-AN-- 90 (203)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCSSCC-CCCCCCTTCEEE-ECTTSSEEEEEEEET-TEEEEEEEESCCCSSC-SS--
T ss_pred ccccCcchHHHHHHHHHHHHHHHhcccCC-CCCCCCCCcEEE-ecCCCcEEEEEEecC-CeEEEEEEEcCCCCCC-CC--
Confidence 34478999999999999999999876321 123345699996 999999999999999 6999999998754322 22
Q ss_pred CcceeeEEEEEcCCCCceEEEEeeecccccCCCceEEeeEEEecCCCC----------CCCCCccCCCCCCCCHHHHHHH
Q 028909 90 PREVLMKVCLTKPVLCSILQFDCRVTEKHIEGSDFDIRNAYYLQSSTC----------LGRPLYRGPMFSSLDPQLQVAL 159 (202)
Q Consensus 90 ~~~~~~~V~I~K~~~~~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~~----------~~~~~Y~GP~f~~LDe~Lq~~~ 159 (202)
|. +|+|+|+|++ |++|.|+|++++ +.|.|++|+++++... .+...|.||.|++||++||++|
T Consensus 91 ~s--~~~V~I~K~~-~~~L~f~C~~~~-----~~~~I~~v~~~~~~~~~~~~~~e~~~~~~~~Y~GP~F~~LDe~Lq~~l 162 (203)
T 1yqf_A 91 SH--NIFVYITQKN-GQTMQADLSIEE-----GELVLNNIRFYDEAALAKDTGAEAEAKRNELYTGPLVHELDYDLLNCV 162 (203)
T ss_dssp CE--EEEEEEECTT-SCEEEEEEEEET-----TEEEEEEEEEESSHHHHHCCSHHHHHHHHHSCCCCCGGGSBHHHHHHH
T ss_pred cc--eEEEEEEeCC-CCEEEEEEEecC-----CEEEEEEEEEeccccccccccccccccccccccCCCcccCCHHHHHHH
Confidence 42 8999999998 689999999875 4599999999976421 2346899999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028909 160 KEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA 200 (202)
Q Consensus 160 ~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~ 200 (202)
++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus 163 ~~YLeeRGI~~~la~fl~~y~~~KE~~EYi~WL~~lk~Fv~ 203 (203)
T 1yqf_A 163 MTYLEKRGVDEKLGEFVVLYSFWAEQQDYEAWLTTMNKFAS 203 (203)
T ss_dssp HHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999985
No 3
>1p32_A Mitochondrial matrix protein, SF2P32; 2.25A {Homo sapiens} SCOP: d.25.1.1 PDB: 3rpx_A
Probab=100.00 E-value=1.3e-48 Score=323.89 Aligned_cols=185 Identities=23% Similarity=0.323 Sum_probs=153.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceEeecCCCCceEEEEeecCCCceEEEEEeeC---CCCC--C--
Q 028909 12 QKALQDLNLLKILNSEITHELSSNRFQDNQSGTLGDFKVEYDAPQSHDVVLRTKFESGEEVAVSALLG---PETF--V-- 84 (202)
Q Consensus 12 ~~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~~~~F~i~~d~~g~~~v~L~r~~~~~E~I~V~~~~~---~~~~--~-- 84 (202)
.|+.+|.+|+++|++||++|+++..+. ..|..+++|+++ + +| ++|+|+|+|+ +|+|+|+|+|+ |+.+ +
T Consensus 1 ~~~~~d~~L~~~L~~EI~~E~~~~~~~-~~p~~~~~F~v~-~-~g-~~v~L~r~~~-~E~I~V~f~v~~~~~~~~~~~~e 75 (209)
T 1p32_A 1 MHTDGDKAFVDFLSDEIKEERKIQKHK-TLPKMSGGWELE-L-NG-TEAKLVRKVA-GEKITVTFNINNSIPPTFDGEEE 75 (209)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHSTTS-CCCCCTTCCEEE-E-ET-TEEEEEEEET-TEEEEEEEECTTCCC--------
T ss_pred CCchHHHHHHHHHHHHHHHHHhccccc-CCCCCCCCcEEE-E-CC-CEEEEEEecC-CcEEEEEEEccCCCCcccccccc
Confidence 488999999999999999999876432 345567899997 5 46 8999999999 69999999874 2211 0
Q ss_pred ---------CCCCCCcceeeEEEEEcC-CCCceEEEEeeeccccc------CCCceEEeeEEEecCCCC-CCCCCccCCC
Q 028909 85 ---------RESRFPREVLMKVCLTKP-VLCSILQFDCRVTEKHI------EGSDFDIRNAYYLQSSTC-LGRPLYRGPM 147 (202)
Q Consensus 85 ---------ed~~~~~~~~~~V~I~K~-~~~~~L~f~C~~~~~~~------~~~~~~I~~v~~~~~~~~-~~~~~Y~GP~ 147 (202)
++...+..++|+|+|+|+ +++++|.|+|++++++. .++.|.|++|++++++.. .....|.| .
T Consensus 76 ~~~~~~~~ee~~~~~~~~~~~V~I~K~~~~~~~L~f~C~~~~~e~~~~~~~~~~~~~I~~v~~~~~~e~~~~~~~Y~g-~ 154 (209)
T 1p32_A 76 PSQGQKVEEQEPELTSTPNFVVEVIKNDDGKKALVLDCHYPEDEVGQEDEAESDIFSIREVSFQSTGESEWKDTNYTL-N 154 (209)
T ss_dssp -------------CCCCCCEEEEEEEGGGTTEEEEEEEECCCCC------TTCCSCEEEEEEEEETTCSSCCTTSCEE-E
T ss_pred cccccccccccccccccCcEEEEEEECCCCCCeEEEEEEecCcccccccccCCceEEEEEEEEecCcccccccccccc-c
Confidence 011234457999999998 34689999999998752 356799999999986532 35678999 8
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 028909 148 FSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVAKS 202 (202)
Q Consensus 148 f~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~~~ 202 (202)
|.+||++||++|++||++||||++||+||++||++|||+||++||++|++||+++
T Consensus 155 f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KE~~eYi~WL~~lk~Fv~~~ 209 (209)
T 1p32_A 155 TDSLDWALYDHLMDFLADRGVDNTFADELVELSTALEHQEYITFLEDLKSFVKSQ 209 (209)
T ss_dssp STTCCHHHHHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999999999999874
No 4
>3qv0_A Mitochondrial acidic protein MAM33; A BOWL like structure, mitochondrial oxidative phosphorylati protein binding; 2.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-44 Score=301.51 Aligned_cols=182 Identities=23% Similarity=0.374 Sum_probs=138.7
Q ss_pred cchhhHHHHHHHHHHHHHHHhcCCCCCCCCCC------CCCceEeecCCCCceE-EEEeecCCCceEEEEEeeC-----C
Q 028909 13 KALQDLNLLKILNSEITHELSSNRFQDNQSGT------LGDFKVEYDAPQSHDV-VLRTKFESGEEVAVSALLG-----P 80 (202)
Q Consensus 13 ~~~~d~~L~~~L~~EI~~E~~~~~~~~~~~~~------~~~F~i~~d~~g~~~v-~L~r~~~~~E~I~V~~~~~-----~ 80 (202)
|-+....|+.+|++||++|+++.... ..|+. -++|+|. |+||.+.| .|+|+|| +|+|+|.|++. |
T Consensus 7 ~~~~~~~l~~~L~~Ei~~E~~~~~~e-~~p~~~~~Fl~~~~f~i~-d~~G~~~V~llkr~~g-~EkI~V~F~i~d~~~~p 83 (227)
T 3qv0_A 7 HHQETQRVGDILQSELKIEKETLPES-TSLDSFNDFLNKYKFSLV-ETPGKNEAEIVRRTES-GETVHVFFDVAQIANLP 83 (227)
T ss_dssp ---CHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHTTCEEE-CCTTCSEEEEEEECTT-SCEEEEEEEHHHHC---
T ss_pred hhHHHHHHHHHHHHHHHHHHhccccc-cCchHHHHHHhcCCcEEE-ecCCCceEEEEEeecC-CcEEEEEEEccccccCC
Confidence 45667899999999999999876432 12222 2679995 99999999 8899999 69999999862 1
Q ss_pred C-C-C------------CCC-CCCCc-ceeeEEEEEcCCCC-ceEEEEeeecccccCCCceEEeeEEEecCCC-------
Q 028909 81 E-T-F------------VRE-SRFPR-EVLMKVCLTKPVLC-SILQFDCRVTEKHIEGSDFDIRNAYYLQSST------- 136 (202)
Q Consensus 81 ~-~-~------------~ed-~~~~~-~~~~~V~I~K~~~~-~~L~f~C~~~~~~~~~~~~~I~~v~~~~~~~------- 136 (202)
. + . +|| ++.+. .++|+|+|+|+++. ++|.|+|++. +.+|.|.|++|++++++.
T Consensus 84 ~e~~~~e~~~~~~~~~~eee~~~~~~~~~~~~V~ItK~~~~~~aL~~e~~~~---~~eg~f~Id~V~~~~d~~~a~~~s~ 160 (227)
T 3qv0_A 84 YNNAMDENTEQNEDGINEDDFDALSDNFANVNVVISKESASEPAVSFELLMN---LQEGSFYVDSATPYPSVDAALNQSA 160 (227)
T ss_dssp ---------------------------CEEEEEEEEC---CCCEEEEEEEEE---TTTTEEEEEEEEEESSHHHHHCCSH
T ss_pred cccccccccccccccccccchhcccCCcceEEEEEEeCCCCCceEEEEEEee---cCCCcEEEEEEEEecchHhhhcccc
Confidence 1 0 0 011 11222 37899999999743 7999999953 245789999999998753
Q ss_pred ---CCCCCCccCCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028909 137 ---CLGRPLYRGPMFSSLDPQLQVALKEYLVARGIGEHLTNYLLLHLHKKEQDQYVNWLQKLESMVA 200 (202)
Q Consensus 137 ---~~~~~~Y~GP~f~~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~~KE~~eYi~WL~~vk~Fv~ 200 (202)
+.+...|.||.|++||++||++|++||++||||++||+||++||.+|||+||++||++|++||+
T Consensus 161 e~~~~r~~~Y~GP~f~~LDe~Lq~~l~~yLeeRGI~~~la~fl~~y~~~KEq~EYi~WL~~lk~Fv~ 227 (227)
T 3qv0_A 161 EAEITRELVYHGPPFSNLDEELQESLEAYLESRGVNEELASFISAYSEFKENNEYISWLEKMKKFFH 227 (227)
T ss_dssp HHHHHHHHSCCCSCGGGSCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccCCCCccccCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2345689999999999999999999999999999999999999999999999999999999984
No 5
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=79.63 E-value=2.6 Score=23.59 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028909 170 EHLTNYLLLHLHKKEQDQYVNWLQK 194 (202)
Q Consensus 170 ~ela~fl~~y~~~KE~~eYi~WL~~ 194 (202)
..|++-...|+...-.+.|++||-+
T Consensus 4 gtFTsdySk~l~~~~ak~fv~wLl~ 28 (30)
T 1t5q_A 4 GTFISDYSIAMDKIHQQDFVNWLLA 28 (30)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHc
Confidence 3567777888888899999999976
No 6
>3c5t_B Exendin-4, exenatide; ligand-bound G protein-coupled receptor extracellular domain protein coupled receptor, glycoprotein, membrane; HET: 10M; 2.10A {Homo sapiens} SCOP: j.6.1.1 PDB: 3c59_B*
Probab=79.03 E-value=1.8 Score=24.46 Aligned_cols=20 Identities=10% Similarity=0.395 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 028909 177 LLHLHKKEQDQYVNWLQKLE 196 (202)
Q Consensus 177 ~~y~~~KE~~eYi~WL~~vk 196 (202)
..|+..+--++||.||.+-+
T Consensus 3 SkyLe~~aakdFv~WL~ngk 22 (31)
T 3c5t_B 3 SKQMEEEAVRLFIEWLKNGG 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 45777778899999998754
No 7
>1jrj_A Exendin-4; Trp-CAGE, GLP-1, poly-proii, hydrophobic cluster, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=76.35 E-value=2.1 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028909 171 HLTNYLLLHLHKKEQDQYVNWLQKLE 196 (202)
Q Consensus 171 ela~fl~~y~~~KE~~eYi~WL~~vk 196 (202)
.|.+-+..|...+--++||+||.+=|
T Consensus 5 tFTsdyS~~l~~~aak~fv~wL~~~k 30 (39)
T 1jrj_A 5 TFTSDLSKQMEEEAVRLFIEWLKNGG 30 (39)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTG
T ss_pred cchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45666777888888899999998633
No 8
>3vcf_A Probable integrase; catalyzes site-specific integration, recombination; 2.70A {Sulfolobus virus 1} PDB: 4dks_A 3uxu_A
Probab=75.99 E-value=4.9 Score=31.28 Aligned_cols=46 Identities=9% Similarity=0.238 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHH
Q 028909 150 SLDPQLQVALKEYLVARGIGEHLTNYLLL---------------HLHKKEQDQYVNWLQKL 195 (202)
Q Consensus 150 ~LDe~Lq~~~~~yLeeRGId~ela~fl~~---------------y~~~KE~~eYi~WL~~v 195 (202)
-..-.|..-+.+||.+.||+.++++||.- --.+++-..|..||+++
T Consensus 103 v~~~~iRk~~~t~m~~~gvp~~vi~fiqGR~~~~vl~~hYl~l~~~a~~~Y~k~~~~l~~~ 163 (163)
T 3vcf_A 103 IAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLKGV 163 (163)
T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHTTCCCSSSSCSCCSCHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHHHHHcCCCccccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 35567888999999999999999999964 23567778888999863
No 9
>2g49_C Glucagon preproprotein; protein-peptide complex, hydrolase; 2.50A {Homo sapiens} PDB: 1kx6_A 1gcn_A 1bh0_A 1nau_A
Probab=72.91 E-value=3.4 Score=22.95 Aligned_cols=24 Identities=21% Similarity=0.450 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028909 171 HLTNYLLLHLHKKEQDQYVNWLQK 194 (202)
Q Consensus 171 ela~fl~~y~~~KE~~eYi~WL~~ 194 (202)
.|.+-...|...+--++|++||.+
T Consensus 5 tFTsdysk~l~~~aak~fv~wL~~ 28 (29)
T 2g49_C 5 TFTSDYSKYLDSRRAQDFVQWLMN 28 (29)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Confidence 355556667777777899999964
No 10
>2l63_A GLP-2, glucagon-like peptide 2; hormone, GPCR, docking, small bowel syndrome; NMR {Homo sapiens} PDB: 2l64_A
Probab=70.38 E-value=2.9 Score=23.95 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028909 171 HLTNYLLLHLHKKEQDQYVNWLQK 194 (202)
Q Consensus 171 ela~fl~~y~~~KE~~eYi~WL~~ 194 (202)
.|.+=+..|...+--++|++||.+
T Consensus 5 tFTsd~s~~l~~~aak~fl~wL~~ 28 (33)
T 2l63_A 5 SFSDEMNTILDNLAARDFINWLIQ 28 (33)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHc
Confidence 455566677788888999999976
No 11
>3iol_B Glucagon; receptor-ligand complex, cell membrane, disulfide bond, G-PR coupled receptor, glycoprotein, membrane, receptor, transdu transmembrane; HET: 10M; 2.10A {Homo sapiens} PDB: 1d0r_A
Probab=66.24 E-value=3.2 Score=23.33 Aligned_cols=23 Identities=22% Similarity=0.473 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028909 172 LTNYLLLHLHKKEQDQYVNWLQK 194 (202)
Q Consensus 172 la~fl~~y~~~KE~~eYi~WL~~ 194 (202)
|..-+..|+..+--++|+.||.+
T Consensus 6 ftsD~s~~L~~~~ak~Fv~wL~~ 28 (31)
T 3iol_B 6 FTSDVSSYLEGQAAKEFIAWLVK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeHHHHHHHHHHHHHHHHHHHHc
Confidence 44455667778888999999975
No 12
>2rrh_A VIP peptides; peptide hormone, hormone; NMR {Homo sapiens} PDB: 2rri_A
Probab=59.46 E-value=20 Score=19.67 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=17.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028909 169 GEHLTNYLLLHLHKKEQDQYVNWLQK 194 (202)
Q Consensus 169 d~ela~fl~~y~~~KE~~eYi~WL~~ 194 (202)
|..|.+-+..|....-=+.|+.||-+
T Consensus 3 dg~FTsdysk~l~~~~ak~fl~~l~~ 28 (29)
T 2rrh_A 3 DAVFTDNYTRLRKQMAVKKYLNSILN 28 (29)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHhc
Confidence 34455556666666666899999965
No 13
>2b4n_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Homo sapiens} PDB: 2l70_A 2l71_A 2obu_A 2qkh_B*
Probab=47.96 E-value=12 Score=22.47 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028909 176 LLLHLHKKEQDQYVNWLQKLE 196 (202)
Q Consensus 176 l~~y~~~KE~~eYi~WL~~vk 196 (202)
+..|+..+-.++||+||-+-+
T Consensus 10 ySk~Ld~~~akdFv~WL~~~k 30 (42)
T 2b4n_A 10 YSIAMDKIHQQDFVNWLLAQK 30 (42)
T ss_dssp CCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCC
Confidence 345677788899999998643
No 14
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=43.69 E-value=17 Score=25.39 Aligned_cols=37 Identities=27% Similarity=0.456 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 028909 158 ALKEYLVARGIGEHLTNYLLLH-LHKKEQDQYVNWLQKL 195 (202)
Q Consensus 158 ~~~~yLeeRGId~ela~fl~~y-~~~KE~~eYi~WL~~v 195 (202)
.+-.=|+++|||..-. -|-+| +..|.+..+..||+..
T Consensus 29 ~~~~~L~~~Gf~kAy~-lLGqFL~l~kd~~~F~~WLk~~ 66 (89)
T 1ci4_A 29 VLGKKLEERGFDKAYV-VLGQFLVLKKDEDLFREWLKDT 66 (89)
T ss_dssp HHHHHHHHTTCCSHHH-HHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHH-HHHHHHHcCCCHHHHHHHHHHH
Confidence 3445567799997532 22233 4667788999999876
No 15
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=42.42 E-value=51 Score=19.54 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 028909 150 SLDPQLQVALKEYLVARGIGEHLTNYLLLHLH 181 (202)
Q Consensus 150 ~LDe~Lq~~~~~yLeeRGId~ela~fl~~y~~ 181 (202)
.||++|.+.|..|-+..|+ ....+|.....
T Consensus 15 rl~~el~~~l~~~a~~~g~--s~s~~ir~ai~ 44 (55)
T 2k9i_A 15 YIPQEWHDRLMEIAKEKNL--TLSDVCRLAIK 44 (55)
T ss_dssp EECHHHHHHHHHHHHHHTC--CHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence 5789999999999999999 46666655443
No 16
>2zop_A Putative uncharacterized protein TTHB164; all alpha proteins, plasmid, NPPSFA; 2.10A {Thermus thermophilus HB8}
Probab=39.99 E-value=41 Score=24.15 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHH-----HH-HHHHHHHHHHHHHHHH
Q 028909 154 QLQVALKEYLVARGIGEHLTNYLLL-----HL-HKKEQDQYVNWLQKLE 196 (202)
Q Consensus 154 ~Lq~~~~~yLeeRGId~ela~fl~~-----y~-~~KE~~eYi~WL~~vk 196 (202)
.|.+.+..||..++ ..+|...|.+ |+ ...|=-+|..||++..
T Consensus 61 ~l~~~l~~wl~~~~-~~~l~~~l~~~d~~~Y~~~T~e~La~~~WlKRfA 108 (114)
T 2zop_A 61 ALGNDLAQVLGYRD-LRELAEAAREAELLQYLRLTREVLAAAEWFKRFA 108 (114)
T ss_dssp HHHHHHHHHTTCSS-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcC-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 58888888998874 4566555533 22 2344456777887753
No 17
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=38.24 E-value=32 Score=23.38 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=20.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHcC
Q 028909 144 RGPMFSSLDPQLQVALKEYLVARG 167 (202)
Q Consensus 144 ~GP~f~~LDe~Lq~~~~~yLeeRG 167 (202)
.|-+|..||+.+-.--.+.|+.||
T Consensus 40 ~~~ef~gmd~~~L~kaL~~L~k~g 63 (79)
T 3htu_A 40 EDEEFHGLDEATLLRALQALQQEH 63 (79)
T ss_dssp TTSTTTTCCHHHHHHHHHHHHHTT
T ss_pred CCCcccCCCHHHHHHHHHHHHHcC
Confidence 467899999998777778999998
No 18
>2d2p_A Pituitary adenylate cyclase activating polypeptide-38; hormone/growth factor complex; NMR {Homo sapiens} PDB: 2jod_B
Probab=33.20 E-value=55 Score=19.16 Aligned_cols=24 Identities=8% Similarity=0.001 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028909 171 HLTNYLLLHLHKKEQDQYVNWLQK 194 (202)
Q Consensus 171 ela~fl~~y~~~KE~~eYi~WL~~ 194 (202)
.|.+-+..|....-=+.|+.||-+
T Consensus 5 ~FTs~yskyl~~~~ak~fl~~l~~ 28 (39)
T 2d2p_A 5 IFTDSYSRYRKQMAVKKYLAAVLG 28 (39)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhc
Confidence 455555556666666789999864
No 19
>3ewt_E Tumor necrosis factor receptor superfamily member 6; calmodulin-peptide complex, FAS, death domain, calcium, calcium binding protein; 2.40A {Homo sapiens}
Probab=32.39 E-value=17 Score=19.36 Aligned_cols=11 Identities=27% Similarity=0.534 Sum_probs=7.6
Q ss_pred HHHHHHhhhcC
Q 028909 192 LQKLESMVAKS 202 (202)
Q Consensus 192 L~~vk~Fv~~~ 202 (202)
|++||+|+.++
T Consensus 13 ~~~Vk~fvR~~ 23 (25)
T 3ewt_E 13 LSQVKGFVRKN 23 (26)
T ss_pred HHHHHHHHHHc
Confidence 46678887764
No 20
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=30.29 E-value=39 Score=24.38 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
.+|++++.+.|.+++++.||+.+
T Consensus 116 ~~l~~e~~~~f~~~~~~~G~~~~ 138 (151)
T 1e5p_A 116 NALTPEENEILVQFAHEKKIPVE 138 (151)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 48899999999999999999976
No 21
>2l5p_A Lipocalin 12; beta barrel, transport protein; NMR {Rattus norvegicus}
Probab=29.09 E-value=1.8e+02 Score=21.63 Aligned_cols=23 Identities=0% Similarity=-0.044 Sum_probs=20.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
.+|++++.+.|.+++++.|++.+
T Consensus 137 ~~~~~e~~~~f~~~~~~~G~~~~ 159 (184)
T 2l5p_A 137 WKITHKTIDRFIALTKTQNLTKN 159 (184)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCChH
Confidence 37899999999999999999875
No 22
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=28.75 E-value=60 Score=21.06 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 028909 151 LDPQLQVALKEYLVARGIG 169 (202)
Q Consensus 151 LDe~Lq~~~~~yLeeRGId 169 (202)
|+.+--+.++.+|++.||+
T Consensus 40 ld~e~id~i~~~L~~~gI~ 58 (72)
T 2k6x_A 40 FDTNLIERIHEELEKHGIN 58 (72)
T ss_dssp CCHHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 8999999999999999995
No 23
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=27.11 E-value=45 Score=24.24 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCHH
Q 028909 150 SLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 150 ~LDe~Lq~~~~~yLeeRGId~e 171 (202)
.|++++.+.|.+++++.||+.+
T Consensus 122 ~l~~e~~~~f~~~~~~~G~~~~ 143 (156)
T 1bj7_A 122 SFTPEELEKYQQLNSERGVPNE 143 (156)
T ss_dssp CCCHHHHHHHHHHHHHHTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 7999999999999999999976
No 24
>2lep_A Rhomboid protease GLPG 1; cell membrane, cytosol, membrane protein, micelles, serine P domain swapping, hydrolase; NMR {Escherichia coli}
Probab=32.92 E-value=13 Score=24.28 Aligned_cols=20 Identities=15% Similarity=0.413 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCCHHHH
Q 028909 154 QLQVALKEYLVARGIGEHLT 173 (202)
Q Consensus 154 ~Lq~~~~~yLeeRGId~ela 173 (202)
.+-.+|.+||+.+||.-++-
T Consensus 11 ~~Aq~f~dyL~s~gI~~~v~ 30 (69)
T 2lep_A 11 RVAQAFVDYMATQGVILTIQ 30 (69)
Confidence 45568999999999998874
No 25
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=25.78 E-value=80 Score=23.52 Aligned_cols=45 Identities=20% Similarity=0.377 Sum_probs=26.9
Q ss_pred CCCceEEEEEeeC--CCCCCCCCCCCcceeeEEEEEcCCCCceEEEEeeecccccC
Q 028909 67 ESGEEVAVSALLG--PETFVRESRFPREVLMKVCLTKPVLCSILQFDCRVTEKHIE 120 (202)
Q Consensus 67 ~~~E~I~V~~~~~--~~~~~ed~~~~~~~~~~V~I~K~~~~~~L~f~C~~~~~~~~ 120 (202)
| ++.++|+-... | ++-...++.|.|.-+.+ ++|-|.|+++.+..+
T Consensus 12 g-d~vwkIs~F~~RKp-----eGty~nsvsFnI~aTn~---gtldftCsa~ad~~e 58 (133)
T 3v0r_A 12 G-DYVWKISEFYGRKP-----EGTYYNSLGFNIKATNG---GTLDFTCSAQADKLE 58 (133)
T ss_dssp C-TTEEEEEEEEEEET-----TSSSCSEEEEEEEESSS---CCCEEEEEEECSSCC
T ss_pred C-ceEEEeeeeeeEcC-----CCCceeeEEEEEEecCC---CceeeeEeccCCCCc
Confidence 5 37777753321 2 12223356777776643 589999999866544
No 26
>3sao_A Extracellular fatty acid-binding protein; beta-barrel, siderophore binding protein, transport protein; HET: NKN DBH; 1.80A {Gallus gallus} SCOP: b.60.1.1 PDB: 1jzu_A 2kt4_B* 2lbv_A*
Probab=25.37 E-value=46 Score=24.45 Aligned_cols=23 Identities=9% Similarity=0.235 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
.+|++++.+.|.+++++.||+.+
T Consensus 118 ~~~~~e~~~~f~~~~~~~G~~~~ 140 (160)
T 3sao_A 118 REVSPTAMAIFRKLARERNYTDE 140 (160)
T ss_dssp SSCCHHHHHHHHHHHHTTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 37999999999999999999976
No 27
>3o22_A Prostaglandin-H2 D-isomerase; lipocalin, prostaglandin synthase; HET: OLA PLM; 1.40A {Homo sapiens} PDB: 3o19_A* 3o2y_A* 2wwp_A 2czt_A 2czu_A 2rq0_A 2e4j_A 2ktd_A*
Probab=24.47 E-value=56 Score=23.88 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
..|++++.+.|.++++++||+.+
T Consensus 125 ~~~~~~~~~~f~~~~~~~G~~~~ 147 (162)
T 3o22_A 125 QTPRAELKEKFTAFCKAQGFTED 147 (162)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 47999999999999999999975
No 28
>1dzk_A PIG OBP, odorant-binding protein; lipocalin, transport, olfaction, sensory transduction; HET: PRZ; 1.48A {Sus scrofa} SCOP: b.60.1.1 PDB: 1dzj_A* 1dzm_A* 1dzp_A* 1e00_A* 1e02_A* 1e06_A* 1hqp_A* 1a3y_A
Probab=24.33 E-value=58 Score=23.54 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCHH
Q 028909 150 SLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 150 ~LDe~Lq~~~~~yLeeRGId~e 171 (202)
.|++++.+.|.+++++.||+.+
T Consensus 123 ~~~~e~~~~f~~~~~~~G~~~~ 144 (157)
T 1dzk_A 123 DIEDQDLEKFKEVTRENGIPEE 144 (157)
T ss_dssp CCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHH
Confidence 7999999999999999999976
No 29
>1lf7_A Complement protein C8gamma; lipocalin, beta barrel, calyx, MAC, immune system; HET: CIT; 1.20A {Homo sapiens} SCOP: b.60.1.1 PDB: 1iw2_A* 2ovd_A* 2ove_A 2ova_A 2rd7_C 3ojy_C* 2qos_C
Probab=23.62 E-value=58 Score=24.44 Aligned_cols=23 Identities=4% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
..|++++.+.|.+++++.||+.+
T Consensus 135 p~l~~e~~~~f~~~~~~~G~~~~ 157 (182)
T 1lf7_A 135 LPVSDSVLSGFEQRVQEAHLTED 157 (182)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 38999999999999999999975
No 30
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=23.12 E-value=61 Score=23.58 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
..|++++.+.|.+++++.||+.+
T Consensus 123 ~~~~~e~~~~f~~~~~~~G~~~~ 145 (160)
T 2hlv_A 123 LNVEDEDLEKFWKLTEDKGIDKK 145 (160)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 37999999999999999999976
No 31
>2ouf_A Hypothetical protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; 2.00A {Helicobacter pylori} SCOP: a.292.1.1 PDB: 2bo3_A 3mli_A
Probab=21.75 E-value=97 Score=21.69 Aligned_cols=40 Identities=8% Similarity=0.287 Sum_probs=26.2
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 028909 156 QVALKEYLVARGIGEHLTNYLLL---------HLHKKEQDQYVNWLQKL 195 (202)
Q Consensus 156 q~~~~~yLeeRGId~ela~fl~~---------y~~~KE~~eYi~WL~~v 195 (202)
+.++...|+++|++..+-..|.. -...+-+..||....++
T Consensus 41 laamE~llEe~G~~e~~e~~ik~~~~~~~~~d~i~~~~~dL~Ie~mg~I 89 (94)
T 2ouf_A 41 LALLETFIEKEDLEEKFESFAKALRIDEELQQKIESRKTDIVIQSMANI 89 (94)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHGGGTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhHHHHHHHHHHhhhhHHHHHHHccchHHHHHHHH
Confidence 45677889999999433333333 35556677777776654
No 32
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=21.59 E-value=61 Score=24.86 Aligned_cols=30 Identities=23% Similarity=0.448 Sum_probs=26.4
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 028909 157 VALKEYLVARGIGEHLTNYLLLHLHKKEQD 186 (202)
Q Consensus 157 ~~~~~yLeeRGId~ela~fl~~y~~~KE~~ 186 (202)
..+..||..+||...+|.|=..|+..-|..
T Consensus 80 ~~if~~L~~~~IG~~~AlfY~~wA~~lE~~ 109 (164)
T 2wvi_A 80 LDMYSYLHNQGIGVSLAQFYISWAEEYEAR 109 (164)
T ss_dssp HHHHHHHHHTTSSTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCcchhhHHHHHHHHHHHHHc
Confidence 457999999999999999999999877754
No 33
>3fiq_A OBP1, RCG36470, odorant-binding protein 1F; lipocalin, oderant-binding protein, transport protein; 1.60A {Rattus norvegicus} SCOP: b.60.1.0
Probab=21.49 E-value=70 Score=23.51 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
.+|++++.+.|.++.+++||..+
T Consensus 122 ~~~s~e~~e~F~~~~~~~Gl~~e 144 (157)
T 3fiq_A 122 EDLNKAQKQELRKLAEEYNIPNE 144 (157)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 47999999999999999999986
No 34
>3s26_A Neutrophil gelatinase-associated lipocalin; beta-barrel, siderophore binding protein, N-linked glycosyla secreted, transport protein; HET: NAG BMA MAN; 1.80A {Mus musculus} SCOP: b.60.1.1 PDB: 2k23_A
Probab=21.46 E-value=68 Score=24.33 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
..|++++.+.|.++++++||+.+
T Consensus 144 ~~l~~e~~~~f~~~~~~~G~~~~ 166 (190)
T 3s26_A 144 KELSPELKERFTRFAKSLGLKDD 166 (190)
T ss_dssp SCCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 37999999999999999999975
No 35
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=21.43 E-value=39 Score=23.15 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=20.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC
Q 028909 145 GPMFSSLDPQLQVALKEYLVARGIG 169 (202)
Q Consensus 145 GP~f~~LDe~Lq~~~~~yLeeRGId 169 (202)
||.....-+...+.|.+|++.||..
T Consensus 1 ~p~~~r~~~~F~~~L~~F~~~~g~~ 25 (96)
T 2jxj_A 1 GPLGSRVRLDFLDQLAKFWELQGST 25 (96)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHHTCC
T ss_pred CchhhHHHHHHHHHHHHHHHHcCCC
Confidence 6766667778888999999999964
No 36
>1ew3_A Allergen EQU C 1; lipocalin, beta barrel; 2.30A {Equus caballus} SCOP: b.60.1.1
Probab=21.29 E-value=71 Score=23.05 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Q 028909 149 SSLDPQLQVALKEYLVARGIGEH 171 (202)
Q Consensus 149 ~~LDe~Lq~~~~~yLeeRGId~e 171 (202)
..|++++.+.|.+++++.|++.+
T Consensus 121 ~~~~~~~~~~f~~~~~~~G~~~~ 143 (159)
T 1ew3_A 121 PDVSPEIKEEFVKIVQKRGIVKE 143 (159)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGG
T ss_pred CCCCHHHHHHHHHHHHHcCCCHH
Confidence 48899999999999999999976
No 37
>1ylx_A Hypothetical protein APC35702; dimer, structural genomics, PSI, protein structure initiative; 1.60A {Geobacillus stearothermophilus} SCOP: d.82.5.1
Probab=20.77 E-value=63 Score=22.86 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHcCCCH
Q 028909 153 PQLQVALKEYLVARGIGE 170 (202)
Q Consensus 153 e~Lq~~~~~yLeeRGId~ 170 (202)
.+||+.|..||++.|++.
T Consensus 14 ~el~~~~~~~l~~Ygld~ 31 (103)
T 1ylx_A 14 EEFIDTLEPMMEAYGLDQ 31 (103)
T ss_dssp HHHHHHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 589999999999999874
No 38
>1yz4_A DUSP15, dual specificity phosphatase-like 15 isoform A; hydrolase; HET: BOG; 2.40A {Homo sapiens}
Probab=20.63 E-value=1.7e+02 Score=21.14 Aligned_cols=40 Identities=10% Similarity=-0.025 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028909 155 LQVALKEYLVARG---IGEHLTNYLLLHLHKKEQDQYVNWLQKL 195 (202)
Q Consensus 155 Lq~~~~~yLeeRG---Id~ela~fl~~y~~~KE~~eYi~WL~~v 195 (202)
+.+++...-..|. .|..|...|..|-.. -+..|.+||..-
T Consensus 114 ~~~a~~~v~~~R~~~~pn~~f~~qL~~~e~~-~~~~~~~~l~~~ 156 (160)
T 1yz4_A 114 WRDVLEAIKATRPIANPNPGFRQQLEEFGWA-SSQKLRRQLEER 156 (160)
T ss_dssp HHHHHHHHHHTCTTCCCCHHHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCHHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 4566654445554 478888999888654 456999999863
No 39
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=20.40 E-value=58 Score=22.71 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.2
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHH
Q 028909 8 LRKGQKALQDLNLLKILNSEITHEL 32 (202)
Q Consensus 8 ~~r~~~~~~d~~L~~~L~~EI~~E~ 32 (202)
-+|.+++..|.++++.+=+||+.+.
T Consensus 11 eLrkfKgkvd~~~v~~IL~eiE~~~ 35 (99)
T 2kjg_A 11 KLRQFKGKVNFNLVMQILDEIELDL 35 (99)
T ss_dssp HHHHHTCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccCHHHHHHHHHHHHHHH
Confidence 3789999999999999999998774
No 40
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=20.13 E-value=63 Score=24.51 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=27.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Q 028909 156 QVALKEYLVARGIGEHLTNYLLLHLHKKEQD 186 (202)
Q Consensus 156 q~~~~~yLeeRGId~ela~fl~~y~~~KE~~ 186 (202)
-..+..||..+||...+|.|=..|+..-|..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~ 114 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQ 114 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHc
Confidence 4678999999999999999999999877754
No 41
>1epa_A Epididymal retinoic acid-binding protein; 2.10A {Rattus norvegicus} SCOP: b.60.1.1 PDB: 1epb_A*
Probab=20.09 E-value=77 Score=22.92 Aligned_cols=23 Identities=9% Similarity=0.076 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Q 028909 150 SLDPQLQVALKEYLVARGIGEHL 172 (202)
Q Consensus 150 ~LDe~Lq~~~~~yLeeRGId~el 172 (202)
.|++++.+.|.++++..|++.+-
T Consensus 122 ~l~~~~~~~~~~~~~~~G~~~~~ 144 (164)
T 1epa_A 122 DDNGEALYNFRKITSDHGFSETD 144 (164)
T ss_dssp SCCHHHHHHHHHHHHHTTCCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCHHH
Confidence 68999999999999999998763
Done!