BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028910
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1
Length = 178
Score = 350 bits (898), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/178 (93%), Positives = 172/178 (96%)
Query: 25 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
MVTFRFHQYQVVGR LP+E DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 85 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR
Sbjct: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120
Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
PCIQII+TATIPAKLCKRES+KQFHNSKIKFPLV +K+RPP+RKLKT YKASRPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB
PE=1 SV=2
Length = 178
Score = 346 bits (888), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 164/178 (92%), Positives = 172/178 (96%)
Query: 25 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
M FRFHQYQVVGRALPTEKD PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 85 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR
Sbjct: 61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
PCIQII+TAT+PAKLCKRESTKQFHNSKIKFPLVF+KVRPP+RKLKTTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC
PE=2 SV=1
Length = 178
Score = 341 bits (874), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 162/178 (91%), Positives = 168/178 (94%)
Query: 25 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
M FRFHQYQVVGRALPTE DEHPKIYRMKLW NEV AKSKFWYF+RKLKKVKKSNGQM
Sbjct: 1 MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60
Query: 85 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120
Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
PCIQII+TAT+PAKLCKRE TKQFHNSKIKFPLVF+KVRPP+RKLKTTYKAS+PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica
GN=RPL18A PE=2 SV=1
Length = 178
Score = 334 bits (857), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 159/178 (89%), Positives = 167/178 (93%)
Query: 25 MVTFRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 84
M FRFHQYQVVGR LPT DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
Query: 85 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 144
LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 145 PCIQIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLFM 202
PCIQII+TAT+ KLCKR++TKQFH S IKFPLV++KVRPPTRKLKTT+KASRPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a
PE=3 SV=2
Length = 171
Score = 204 bits (520), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 96/171 (56%), Positives = 124/171 (72%), Gaps = 5/171 (2%)
Query: 31 HQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 90
H++QVVGR +PTE+D +PKIYRM+L+A + AKS+FWYFL K+ K+KKS G++L + EI
Sbjct: 4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEI 63
Query: 91 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 150
FE P K+KN+G+++RY SR+G HN+YKEYRD T GAV QMY EMASRH R I II
Sbjct: 64 FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHII 123
Query: 151 RTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A L +R +TKQFH+SKIKFPL + K K+T+ A+RPN F
Sbjct: 124 DIKEIAASLTRRANTKQFHDSKIKFPLTHR-----IAKSKSTFVANRPNTF 169
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2
Length = 176
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1
Length = 176
Score = 191 bits (484), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1
Length = 176
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1
Length = 176
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LPT K P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI++
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A
PE=1 SV=1
Length = 177
Score = 189 bits (479), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 85/158 (53%), Positives = 119/158 (75%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LP+EK+ +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++
Sbjct: 9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVY 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+ IQII+
Sbjct: 69 ETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKL 189
+IPA +R KQFH+SKIKFPLV + RKL
Sbjct: 129 VDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166
>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1
Length = 176
Score = 188 bits (478), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 124/170 (72%), Gaps = 3/170 (1%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LP+ K+ P +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++ +F
Sbjct: 9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVF 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
EK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI++
Sbjct: 69 EKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A C+R + KQFH+SKIKFPL + +R R+ K + RPN F
Sbjct: 129 VQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2
SV=1
Length = 177
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 80/146 (54%), Positives = 114/146 (78%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+V+GR LP+E + P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIP 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+ IQII+
Sbjct: 69 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPL 177
I A C+R KQFHNS I+FPL
Sbjct: 129 VEVIKASACRRPQVKQFHNSTIRFPL 154
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2
SV=1
Length = 176
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 121/170 (71%), Gaps = 3/170 (1%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LP+ K+ P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ + +
Sbjct: 9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
E++P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI++
Sbjct: 69 EQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A C+R + KQFH+SKIKFPL + +R R+ K + RP F
Sbjct: 129 VQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=3
SV=2
Length = 180
Score = 183 bits (464), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 115/148 (77%)
Query: 30 FHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 89
++Y VVGR +PTEK+ I++M+++ATN V AKS+FWYF+ L++VKK+NG++L+I +
Sbjct: 10 LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69
Query: 90 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 149
+FEKNP +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++ I I
Sbjct: 70 VFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHI 129
Query: 150 IRTATIPAKLCKRESTKQFHNSKIKFPL 177
++ T+ A+ KR K FH++KI+FPL
Sbjct: 130 LKVQTVKAEDTKRAGIKMFHDAKIRFPL 157
>sp|P0DJ18|RL18A_TETTH 60S ribosomal protein L18a OS=Tetrahymena thermophila GN=RPL18A
PE=1 SV=1
Length = 189
Score = 182 bits (463), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 119/174 (68%)
Query: 28 FRFHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAI 87
+ QY V LP E+ P+I +M+++A +EV AK+KFWY +RKL K+K+S G++L++
Sbjct: 16 MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSV 75
Query: 88 NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCI 147
NEI+EK+ +K YGI L+YQSRT HNMYKEYRD +LNGAV Q+ +MA HR + I
Sbjct: 76 NEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTI 135
Query: 148 QIIRTATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
QIIRTAT+ K KR +T N+ +KFP+V RP +K +T YKA+RP F
Sbjct: 136 QIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1
Length = 176
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 82/170 (48%), Positives = 117/170 (68%), Gaps = 3/170 (1%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+Y+VVGR LP+ K+ P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ + +
Sbjct: 9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
EK P K+KN+G+WLR SR+G HNMY+EYRD T + AV Q Y +M +RHR R+ I I++
Sbjct: 69 EKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMK 128
Query: 152 TATIPAKLCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
I A C+R + KQFH+SKIKFPL + +R R+ + RPN F
Sbjct: 129 VQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175
>sp|P0CX24|RL20B_YEAST 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1
Length = 172
Score = 173 bits (438), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 121/175 (69%), Gaps = 10/175 (5%)
Query: 30 FHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 89
F +YQV+GR LPTE PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+
Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 90 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 149
I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I I
Sbjct: 64 INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 150 IRTATIPAKL-CKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT--TYKASRPNLF 201
++ A I KR+ KQF +KFPL P R K+ T+ RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPL-------PHRVQKSTKTFSYKRPSTF 171
>sp|P0CX23|RL20A_YEAST 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1
Length = 172
Score = 173 bits (438), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 121/175 (69%), Gaps = 10/175 (5%)
Query: 30 FHQYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 89
F +YQV+GR LPTE PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+
Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 90 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 149
I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I I
Sbjct: 64 INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 150 IRTATIPAKL-CKRESTKQFHNSKIKFPLVFKKVRPPTRKLKT--TYKASRPNLF 201
++ A I KR+ KQF +KFPL P R K+ T+ RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPL-------PHRVQKSTKTFSYKRPSTF 171
>sp|P05732|RL20_SCHPO 60S ribosomal protein L20 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl20a PE=1 SV=3
Length = 176
Score = 167 bits (424), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 32 QYQVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 91
+YQVVGR +PTE + PK++RM+L+A NE AKS++WYFL+ + KVKK+ G+++AINEI
Sbjct: 5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEIS 64
Query: 92 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIR 151
E P K K +GIW+RY SR+G HNMYKE+RDTT GAVE MY +MA+RHR R I+I++
Sbjct: 65 EPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILK 124
Query: 152 TATIPAK-LCKRESTKQFHNSKIKFPLVFKKVRPPTRKLKTTYKASRPNLF 201
+ K +R KQ N +KFPL ++ K + RP+ F
Sbjct: 125 VVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175
>sp|A6UT94|RLX_META3 50S ribosomal protein LX OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rplX PE=3 SV=1
Length = 73
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 118 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPA 157
KEY+ A+E++Y+E+ S+H V+ I+II + I A
Sbjct: 22 KEYKAMKEEDAIEKIYSEIGSKHNVKRASIKIIEVSEISA 61
>sp|A6VI47|RLX_METM7 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rplX PE=3 SV=1
Length = 76
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 118 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 155
KEY + A+E MY+EM S+H V+ I+I+ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRAYIKIVEVSEI 59
>sp|A4G0D0|RLX_METM5 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rplX PE=3 SV=1
Length = 76
Score = 33.5 bits (75), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 118 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 155
KEY + A+E MY+EM S+H V+ I+++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRANIKVVEISEI 59
>sp|A9A8N2|RLX_METM6 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rplX PE=3 SV=1
Length = 76
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 118 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 155
KEY + A+E MY+EM S+H V+ I ++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHSVKRAYINVLEVSEI 59
>sp|Q6M157|RLX_METMP 50S ribosomal protein LX OS=Methanococcus maripaludis (strain S2 /
LL) GN=rplX PE=3 SV=1
Length = 76
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 118 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATIPAK 158
KEY N A+E MY+E+ S+H V+ I+++ + I +
Sbjct: 22 KEYNVLKENDALETMYSEIGSKHAVKRANIKVVEISEISVE 62
>sp|A6UR53|RLX_METVS 50S ribosomal protein LX OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rplX PE=3 SV=1
Length = 76
Score = 32.3 bits (72), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 118 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIRTATI 155
KEY + A+E MY++M S+H V+ IQ++ + I
Sbjct: 22 KEYNVLKESDALEIMYSDMGSKHSVKRANIQVLEISEI 59
>sp|A8MLP2|ACCA_ALKOO Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Alkaliphilus oremlandii (strain OhILAs) GN=accA PE=3
SV=1
Length = 316
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 69 YFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIW 104
Y L++LK ++ ML E+ EK TKI+N GIW
Sbjct: 285 YVLQELKDLR-----MLKTEELLEKRYTKIRNIGIW 315
>sp|B9LUU5|RLX_HALLT 50S ribosomal protein LX OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rplX PE=3 SV=1
Length = 58
Score = 31.2 bits (69), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 98 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 149
+ Y + ++QSR G+ K+ + A E++YT + S+H + P I+I
Sbjct: 1 MSTYTVTGQFQSRDGFQPFTKDVEAENEDLARERIYTTVGSQHNRKRPQIEI 52
>sp|Q494D6|HIS6_BLOPB Imidazole glycerol phosphate synthase subunit HisF OS=Blochmannia
pennsylvanicus (strain BPEN) GN=hisF PE=3 SV=1
Length = 258
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 34 QVVGRALPTEKDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFE- 92
Q V ++ T + KIY++K + + RAK W L +KKV++ + +N + +
Sbjct: 123 QCVVVSIDTWHNPQKKIYQVKCYTGDSTRAKITTWQTLDWVKKVQEYGAGEIVLNMMNQD 182
Query: 93 --KNPTKI-------KNYGIWLRYQSRTG-YHNMYKEYRDTTLNGAVEQ--MYTEMASRH 140
KN + K+ + L G Y + + +RD ++GA+ + ++ H
Sbjct: 183 GMKNGYDLDQLRNIRKHCQVPLIASGGAGTYQHFLEAFRDADVDGALAASVFHNQIIDIH 242
Query: 141 RVRSPCIQIIRTATIPAKLC 160
+++ Q + I +LC
Sbjct: 243 KLK----QFLNKEGIKIRLC 258
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,842,040
Number of Sequences: 539616
Number of extensions: 2602229
Number of successful extensions: 5424
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5393
Number of HSP's gapped (non-prelim): 34
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)